Citrus Sinensis ID: 019957

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
Protein Sequence
MAIAAAAASSSSSLFPKYPCLSRNSPRLPQSLRFSSTIRAVTLQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQKP
Secondary Structure (PSIPRED)
cHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccccccHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHccccccccEEEEEccccccccccccccHHEEHHHccccccHHHHHHHHHHHcccccEEEEEEEcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHccccEEEEEEEcEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccHHHccHEcccccccHHHccccccccccHccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHcHHHHHHHHHcHHHHHHHccccccHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHccccccccEEEEEccHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHcccccEEEEEEEEcccccccHcHHHHHHHHHcccccccHHHHHHHHHHccccEEEEEEccEEEEEEEEcc
Coil and Loop (DISEMBL)
MAIAAAAassssslfpkypclsrnsprlpqslrfsstiravtlqpaksernqtlelegdlfscpicyeplirkgptgltlgaiyrsgfkcrkcdktysskdnyldLTVIsglkdytevkpastelfrspfVSFLYergwrqnfnrsgfpgpdeEFKMAQEYFKSaqggllvdvscgsglfsrkfaksgtysgvvaldFSENMLRQCYDFIKQDNTILTSNLALVRAdvcrlpfasgfvDAVHAgaalhcwpspsnaVAEISRILrsggvfvgttflrytsstsltGRVLRERILQNYNYLTEEEIEDLCtscgltnytsKVQQSFIMFAAQKP
Flexible Loop (DISEMBL)
MAIAAaaassssslfpkyPCLSRNSPRLPQSLRfsstiravtlqpaksernqtlelegdlFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKcdktysskdnyldLTVISGLKDYTevkpastelfrsPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVfvgttflrytsstsltgrvlRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQKP
Low Complexity Region (SEG)
MAIaaaaasssssLFPKYPCLSRNSPRLPQSLRFSSTIRAVTLQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQKP
Disordered region (IsUnstruct)
*****************************************************LELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGF******FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFA****
Disordered Region (DISOPRED)
***********************************************************LFSCPICYEPLIR***************FKCRKCDKTYSSKDNYLDLTV*************STELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQKP
Disordered Region (DISEMBL)
*************LFPKYPCLSRNSPRLPQSLRFSSTIRAVTLQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQKP
Disordered Region (DISPRO)
**************FPKYP*LSRNSPRLPQSLRFSSTIRAVTL********QTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQKP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAIAAAAASSSSSLFPKYPCLSRNSPRLPQSLRFSSTIRAVTLQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	333	2.2.26 [Sep-21-2011]
Q0WPT7	352	Uncharacterized methyltra	yes	no	0.903	0.855	0.691	1e-125
Q8LBV4	355	Uncharacterized methyltra	no	no	0.849	0.797	0.527	8e-82
Q24W96	253	Demethylmenaquinone methy	yes	no	0.504	0.664	0.245	5e-10
B9DNV5	241	Demethylmenaquinone methy	yes	no	0.363	0.502	0.302	3e-09
O66128	246	Demethylmenaquinone methy	yes	no	0.363	0.491	0.288	5e-09
Q4L6H3	239	Demethylmenaquinone methy	yes	no	0.300	0.418	0.339	1e-08
Q6GGU0	241	Demethylmenaquinone methy	yes	no	0.303	0.419	0.336	2e-08
Q2YY85	241	Demethylmenaquinone methy	yes	no	0.303	0.419	0.336	2e-08
P67063	241	Demethylmenaquinone methy	yes	no	0.303	0.419	0.336	3e-08
A8Z450	241	Demethylmenaquinone methy	yes	no	0.303	0.419	0.336	3e-08

>sp|Q0WPT7|Y2104_ARATH Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana GN=At2g41040 PE=1 SV=1

 Score =  448 bits (1153), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/305 (69%), Positives = 250/305 (81%), Gaps = 4/305 (1%)

Query: 33  RFSSTIRAVTLQPAKSERNQTLELEGD---LFSCPICYEPLIRKGPTGLTLGAIYRSGFK 89
           RF S   +     +   +N+T ++E +   +F+CP+CYEPL+RKGP+G+ L AIYRSGFK
Sbjct: 48  RFPSAAISAVAPKSDINKNETPKIEIEETQVFACPVCYEPLMRKGPSGINLQAIYRSGFK 107

Query: 90  CRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFP 149
           C +C+KTYSSKD YLDLTV + L DY EVKP +TELFRSP VSFLYERGWRQ F RSGFP
Sbjct: 108 CGQCNKTYSSKDEYLDLTVTADLDDYNEVKPITTELFRSPLVSFLYERGWRQAFKRSGFP 167

Query: 150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
           GPDEEF+MA+EYFK A+GGLLVDVSCGSGLFSRKFA+SG YSGV+ALD+SENMLRQC +F
Sbjct: 168 GPDEEFRMAEEYFKEAEGGLLVDVSCGSGLFSRKFAQSGKYSGVIALDYSENMLRQCKEF 227

Query: 210 IKQDNTILTS-NLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
           IK DNT   S N+A+VRADV RLPF SG VDAVHAGAALHCWPSP+NA+AEI R+LRSGG
Sbjct: 228 IKNDNTFDNSTNIAVVRADVSRLPFPSGSVDAVHAGAALHCWPSPTNAIAEICRVLRSGG 287

Query: 269 VFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMF 328
           VFVGTTFLRY+ ST    R  + RILQ+YNYL ++EI+D+CTSCGLT+Y   +Q SFIMF
Sbjct: 288 VFVGTTFLRYSPSTPWIIRPFQSRILQSYNYLMQDEIKDVCTSCGLTDYEDYIQDSFIMF 347

Query: 329 AAQKP 333
            A+KP
Sbjct: 348 TARKP 352

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q8LBV4|Y1814_ARATH Uncharacterized methyltransferase At1g78140, chloroplastic OS=Arabidopsis thaliana GN=At1g78140 PE=1 SV=1

 Score =  304 bits (778), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 155/294 (52%), Positives = 198/294 (67%), Gaps = 11/294 (3%)

Query: 47  KSERNQTLELEGDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLD 105
           K ++N+    E  + +CPICY  L     P GL   A      +C  C ++YS  + +LD
Sbjct: 65  KKDKNRG---EKKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLD 121

Query: 106 LTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSA 165
           L V SG K Y+E  P STELFR+P VSFLYERGWRQNF   GFPGP++EF+MA+ Y K  
Sbjct: 122 LAVASGSKRYSEPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPV 181

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI-KQDNTILTSNLALV 224
            GG ++D SCGSG+FSR F +S  +S V+ALD+SENMLRQCY+ + K++N      L LV
Sbjct: 182 LGGNIIDASCGSGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLV 241

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL 284
           RAD+ RLPF SG VDAVHAGAALHCWPSPS+AVAEISR+LR GGVFV TTF+ Y    S 
Sbjct: 242 RADIARLPFLSGSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFI-YDGPFSF 300

Query: 285 TG--RVLRERILQ---NYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQKP 333
               + LR+ I++   ++ +L E E+ED+C +CGL N+T      FIM +A KP
Sbjct: 301 IPFLKNLRQEIMRYSGSHIFLNERELEDICKACGLVNFTRVRNGPFIMLSATKP 354

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q24W96|UBIE_DESHY Demethylmenaquinone methyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=ubiE PE=3 SV=1

 Score = 65.5 bits (158), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 40/208 (19%)

Query: 130 FVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-G 188
            +SF  ++GWR               K A +  ++  G  +VD+ CG+   S + A + G
Sbjct: 43  LMSFGLDKGWR---------------KKAVQTVEAKPGMTMVDICCGTAQLSLELAMTVG 87

Query: 189 TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 248
               +  LDFSENML++  + +    +   S + L + D   LPFA    D    G  L 
Sbjct: 88  EQGQITGLDFSENMLKKAQENLA--GSPYRSIIELRQGDAMNLPFADNSFDGATVGWGLR 145

Query: 249 CWPSPSNAVAEISRILRSGGVFVGTT-------------FLRYTSSTSLTGRVLRERILQ 295
             P     V E+ R+++ GG+ V                +L +     L G++   +  +
Sbjct: 146 NLPDLEKGVQEMIRVVKPGGMVVSLDMAKPTMPGFKQGYWLYFNKLVPLMGKIWAGKA-K 204

Query: 296 NYNYL--------TEEEIEDLCTSCGLT 315
            Y YL        +++E+ ++   CGLT
Sbjct: 205 AYQYLHDSAVEFPSQQELANIFARCGLT 232

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Desulfitobacterium hafniense (strain Y51) (taxid: 138119)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|B9DNV5|UBIE_STACT Demethylmenaquinone methyltransferase OS=Staphylococcus carnosus (strain TM300) GN=ubiE PE=3 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 21/142 (14%)

Query: 131 VSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY 190
           +SF   + WR+   +S                +  +G   +DV CG+  ++   +K+   
Sbjct: 29  ISFEQHKVWRKRVMKS---------------MQVKKGSKALDVCCGTADWTIALSKAVGP 73

Query: 191 SG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHC 249
           SG V+ LDFSENML+     + ++ T   SN+ LV+ D   LPF     D V  G  L  
Sbjct: 74  SGEVIGLDFSENMLK-----VGEEKTKNMSNIQLVQGDAMDLPFDDNEFDYVTIGFGLRN 128

Query: 250 WPSPSNAVAEISRILRSGGVFV 271
            P    A+ E++R+L+ GG+ V
Sbjct: 129 IPDYVIALKEMNRVLKPGGMAV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus carnosus (strain TM300) (taxid: 396513)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|O66128|UBIE_MICLU Demethylmenaquinone methyltransferase OS=Micrococcus luteus GN=ubiE PE=3 SV=1

 Score = 62.4 bits (150), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 21/142 (14%)

Query: 131 VSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GT 189
           +SF   + WR+             + M Q   K  +G   +DV CG+G ++ + A++ G 
Sbjct: 38  ISFNQHKSWRK-------------YTMKQMNVK--KGSKALDVCCGTGDWTIQMAQAVGK 82

Query: 190 YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHC 249
              V+ LDFSENML      + Q  T    N+ L+  +   LPF     D    G  L  
Sbjct: 83  NGHVIGLDFSENMLS-----VAQGKTNHIQNIELIHGNAMELPFEDNIFDYTTIGFGLRN 137

Query: 250 WPSPSNAVAEISRILRSGGVFV 271
            P     + E+ R+L+ GG+ V
Sbjct: 138 LPDYKKGLEEMYRVLKPGGMIV 159

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Micrococcus luteus (taxid: 1270)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|Q4L6H3|UBIE_STAHJ Demethylmenaquinone methyltransferase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=ubiE PE=3 SV=1

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 6/106 (5%)

Query: 167 GGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G   +DV CG+  ++   +K+ G +  V  LDFSENML      + ++ T   +N+ LV 
Sbjct: 50  GSKALDVCCGTADWTIALSKAVGAHGEVTGLDFSENMLE-----VGKEKTKHMNNIHLVH 104

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
            D   LPF     D V  G  L   P    A+ E++R+L+ GG+ V
Sbjct: 105 GDAMNLPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKPGGMIV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus haemolyticus (strain JCSC1435) (taxid: 279808)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|Q6GGU0|UBIE_STAAR Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain MRSA252) GN=ubiE PE=3 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
           +G   +DV CG+G ++   +K+ G+   V  +DFSENML      + ++ T    N+ LV
Sbjct: 49  KGMKALDVCCGTGDWTIALSKAVGSTGEVTGIDFSENMLE-----VGKEKTASMENVKLV 103

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
             D   LPF     D V  G  L   P    A+ E++R+L+ GG+ V
Sbjct: 104 HGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKPGGMVV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain MRSA252) (taxid: 282458)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|Q2YY85|UBIE_STAAB Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ubiE PE=3 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
           +G   +DV CG+G ++   +K+ G    V  +DFSENML      + ++ T    N+ LV
Sbjct: 49  KGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-----VGKEKTASMENVKLV 103

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
             D   LPF     D V  G  L   P    A+ E++R+L+ GG+ V
Sbjct: 104 HGDAMELPFGDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKPGGMVV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain bovine RF122 / ET3-1) (taxid: 273036)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|P67063|UBIE_STAAW Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain MW2) GN=ubiE PE=3 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
           +G   +DV CG+G ++   +K+ G    V  +DFSENML      + ++ T    N+ LV
Sbjct: 49  KGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-----VGKEKTASMENVKLV 103

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
             D   LPF     D V  G  L   P    A+ E++R+L+ GG+ V
Sbjct: 104 HGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKPGGMVV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain MW2) (taxid: 196620)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|A8Z450|UBIE_STAAT Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=ubiE PE=3 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
           +G   +DV CG+G ++   +K+ G    V  +DFSENML      + ++ T    N+ LV
Sbjct: 49  KGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-----VGKEKTASMENVKLV 103

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
             D   LPF     D V  G  L   P    A+ E++R+L+ GG+ V
Sbjct: 104 HGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKPGGMVV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain USA300 / TCH1516) (taxid: 451516)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
363814481	341	uncharacterized protein LOC100798970 [Gl	0.957	0.935	0.733	1e-136
224120260	308	predicted protein [Populus trichocarpa]	0.867	0.938	0.797	1e-136
356556565	341	PREDICTED: uncharacterized methyltransfe	0.957	0.935	0.727	1e-136
255581285	290	phosphatidylethanolamine n-methyltransfe	0.849	0.975	0.798	1e-134
224142467	332	predicted protein [Populus trichocarpa]	0.966	0.969	0.696	1e-134
217072446	342	unknown [Medicago truncatula]	0.957	0.932	0.730	1e-134
225463049	343	PREDICTED: uncharacterized methyltransfe	0.984	0.956	0.720	1e-134
388516609	342	unknown [Medicago truncatula]	0.957	0.932	0.726	1e-134
225463051	340	PREDICTED: uncharacterized methyltransfe	0.987	0.967	0.714	1e-132
296084557	338	unnamed protein product [Vitis vinifera]	0.978	0.964	0.718	1e-131

>gi|363814481|ref|NP_001242875.1| uncharacterized protein LOC100798970 [Glycine max] gi|255636913|gb|ACU18789.1| unknown [Glycine max]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 237/323 (73%), Positives = 273/323 (84%), Gaps = 4/323 (1%)

Query: 15  FPKYPCLSRNSPRLPQSLRFSS--TIRAVTLQPAKSE--RNQTLELEGDLFSCPICYEPL 70
           F K P LS  S   P+ LR  S  TIRA++   A+SE    Q   +E D+F+CP+CYEPL
Sbjct: 19  FSKCPRLSSKSHFRPRLLRSISQRTIRAISAVAAESELGTQQDHAIEADIFACPVCYEPL 78

Query: 71  IRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPF 130
           IRKGP+GL L AIYRSGF C++C KTYSSKD YLDLTV +GL+DYTE++PA TELFRSP 
Sbjct: 79  IRKGPSGLNLPAIYRSGFMCKRCKKTYSSKDRYLDLTVTAGLRDYTEIQPARTELFRSPL 138

Query: 131 VSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY 190
           VSFL+ERGWRQNF +SGFPGPDEEFKMAQEYF+SA+GGLLVDVSCGSGLFSRKFAKSGTY
Sbjct: 139 VSFLHERGWRQNFRQSGFPGPDEEFKMAQEYFESAEGGLLVDVSCGSGLFSRKFAKSGTY 198

Query: 191 SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCW 250
           SGV+ALDFSENMLRQCYDFI++D+ + T+N+ALVRADV RLPF+SG VDAVHAGAALHCW
Sbjct: 199 SGVIALDFSENMLRQCYDFIEKDDALSTNNIALVRADVSRLPFSSGSVDAVHAGAALHCW 258

Query: 251 PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCT 310
           PSPSNAVAEI+R L++GGVFVG+TFLRY+S T    R  RER  Q Y YLTEEEI+DLCT
Sbjct: 259 PSPSNAVAEITRTLKNGGVFVGSTFLRYSSKTPWFLRPFRERTPQGYGYLTEEEIKDLCT 318

Query: 311 SCGLTNYTSKVQQSFIMFAAQKP 333
           SCGLTNY+SK+QQ+FIMF AQKP
Sbjct: 319 SCGLTNYSSKIQQAFIMFTAQKP 341

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120260|ref|XP_002331004.1| predicted protein [Populus trichocarpa] gi|222872934|gb|EEF10065.1| predicted protein [Populus trichocarpa]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 232/291 (79%), Positives = 257/291 (88%), Gaps = 2/291 (0%)

Query: 43  LQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN 102
            Q   ++++QTLE+  D F+CPICY+PLIRKGP G  L AIYRSGFKC +C+KTYSSK+N
Sbjct: 20  FQELSTQQSQTLEV--DPFACPICYQPLIRKGPKGFNLPAIYRSGFKCNRCNKTYSSKEN 77

Query: 103 YLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYF 162
           YLDLT+ +G+KDYTEVKP  TELFRSP VSFLYERGWRQNFN+SGFPGPDEEFKMAQEYF
Sbjct: 78  YLDLTITAGMKDYTEVKPVRTELFRSPLVSFLYERGWRQNFNQSGFPGPDEEFKMAQEYF 137

Query: 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA 222
           K  +GGLLVDVSCGSGLFSRKFAKSGTYS V+ALDFSENMLRQCYDFIKQD+TI T NLA
Sbjct: 138 KPTEGGLLVDVSCGSGLFSRKFAKSGTYSKVIALDFSENMLRQCYDFIKQDDTISTRNLA 197

Query: 223 LVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST 282
           LVRADV RLPFASG VDA+HAGAALHCWPS SNAVAEI R LRSGGVFVGTTFL+Y+S+T
Sbjct: 198 LVRADVSRLPFASGSVDAIHAGAALHCWPSASNAVAEICRALRSGGVFVGTTFLQYSSTT 257

Query: 283 SLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQKP 333
           S   R  RERI+QNYNY TEEEIEDLCT+CGLTNYT  VQ+SFIMF+AQKP
Sbjct: 258 SWIERPFRERIMQNYNYFTEEEIEDLCTTCGLTNYTRIVQRSFIMFSAQKP 308

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556565|ref|XP_003546595.1| PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic-like [Glycine max]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/323 (72%), Positives = 272/323 (84%), Gaps = 4/323 (1%)

Query: 15  FPKYPCLSRNSPRLPQSLR--FSSTIRAVTLQPAKSE--RNQTLELEGDLFSCPICYEPL 70
           F + P LS  S   P+  R    S IRA++   A+SE    Q   +E D+F+CP+CYEPL
Sbjct: 19  FLRCPRLSSKSQFHPRRFRSQTQSIIRAISAVAAESELGTQQDQAIEADIFACPVCYEPL 78

Query: 71  IRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPF 130
           IRKGP+GL L AIYRSGF C++C K+YSSKD YLDLTV +GL+DYTE++PA TELFRSP 
Sbjct: 79  IRKGPSGLNLPAIYRSGFMCKRCKKSYSSKDRYLDLTVTAGLRDYTEIQPARTELFRSPL 138

Query: 131 VSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY 190
           VSFLYERGWRQNF +SGFPGPDEEFKMAQEYF+SA+GGL+VDVSCGSGLFSRKFAKSG Y
Sbjct: 139 VSFLYERGWRQNFRQSGFPGPDEEFKMAQEYFESAKGGLIVDVSCGSGLFSRKFAKSGAY 198

Query: 191 SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCW 250
           SGV+ALDFSENMLRQCY+FIK+D+T+ T+N+ALVRADV RLPF SG VDAVHAGAALHCW
Sbjct: 199 SGVIALDFSENMLRQCYEFIKKDDTLSTTNIALVRADVSRLPFPSGSVDAVHAGAALHCW 258

Query: 251 PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCT 310
           PSPSNAVAEI+R+L+SGGVFVG+TFLRY+S T    R  RERI Q Y YLTEEEI+DLCT
Sbjct: 259 PSPSNAVAEITRVLKSGGVFVGSTFLRYSSLTPWFLRPFRERIPQGYGYLTEEEIKDLCT 318

Query: 311 SCGLTNYTSKVQQSFIMFAAQKP 333
           SCGLTNY+SK+QQ+FIMF AQKP
Sbjct: 319 SCGLTNYSSKIQQAFIMFTAQKP 341

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581285|ref|XP_002531454.1| phosphatidylethanolamine n-methyltransferase, putative [Ricinus communis] gi|223528947|gb|EEF30941.1| phosphatidylethanolamine n-methyltransferase, putative [Ricinus communis]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 226/283 (79%), Positives = 248/283 (87%)

Query: 51  NQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110
            QT   E D+F+CP+CYEPLIRKGP G  L AIYRSGFKC+KC+KTYSSKDNYLDLT+ +
Sbjct: 6   QQTQTFEDDVFACPVCYEPLIRKGPPGFNLSAIYRSGFKCKKCNKTYSSKDNYLDLTITA 65

Query: 111 GLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLL 170
            +K+YTEVKPA TELFRSP VSFLYERGWRQNFN+SGFPGPDEEFKMAQEYFK A+GG+L
Sbjct: 66  SMKEYTEVKPARTELFRSPLVSFLYERGWRQNFNQSGFPGPDEEFKMAQEYFKPAEGGIL 125

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           VDVSCGSGLFSRKFA SGTYS VVALDFSENMLRQCYDFIKQD+ I   +LALVRADV R
Sbjct: 126 VDVSCGSGLFSRKFATSGTYSKVVALDFSENMLRQCYDFIKQDDNISEKDLALVRADVSR 185

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR 290
           LPF+SG VDAVHAGAALHCWPSPSNA+AEI R LRSGGVFVGTTFLRY +++S   R  R
Sbjct: 186 LPFSSGSVDAVHAGAALHCWPSPSNAIAEICRTLRSGGVFVGTTFLRYNATSSWIERSFR 245

Query: 291 ERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQKP 333
           ERI+  YNY TEEEIEDLCTSCGLTNY SKVQ+SFIMF A+KP
Sbjct: 246 ERIMSGYNYYTEEEIEDLCTSCGLTNYQSKVQRSFIMFTAEKP 288

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142467|ref|XP_002324579.1| predicted protein [Populus trichocarpa] gi|222866013|gb|EEF03144.1| predicted protein [Populus trichocarpa]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/343 (69%), Positives = 275/343 (80%), Gaps = 21/343 (6%)

Query: 1   MAIAAAAASS--SSSLFPKYPCLSRNSPRLPQ-----SLRFSSTIRA---VTLQPAKSER 50
           MA+A+ A       S+  KYP LS  S   P      SLRF STIRA   V L+P ++  
Sbjct: 1   MAMASNALHHPLHQSISLKYPHLSHISRFSPSCLRFTSLRFPSTIRATSAVALEPNQA-- 58

Query: 51  NQTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS 110
                    +F+CP+CYEPLIRKGP G  L AIYRS FKC+KC KTYSSKDNYLDLT+ +
Sbjct: 59  ---------IFACPVCYEPLIRKGPPGFNLPAIYRSSFKCKKCTKTYSSKDNYLDLTITA 109

Query: 111 GLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLL 170
           G+KDYTE+ P  TELFRSP VSFLYERGWRQ+FN+SGFPGPDEEF+MAQEYFK A+GGLL
Sbjct: 110 GMKDYTEINPVRTELFRSPLVSFLYERGWRQSFNQSGFPGPDEEFEMAQEYFKPARGGLL 169

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           VDVSCGSGLFSRKFAKSG YS V+ALDFSENMLRQCYD+IKQD+TI T+NL L+RADV R
Sbjct: 170 VDVSCGSGLFSRKFAKSGAYSKVIALDFSENMLRQCYDYIKQDDTISTTNLGLIRADVSR 229

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR 290
           LPFASG VDAVHAGAA+HCWPSPSNAV+EI R+LRSGGVFVGTTFLRY+S+T    +  R
Sbjct: 230 LPFASGSVDAVHAGAAMHCWPSPSNAVSEICRVLRSGGVFVGTTFLRYSSTTPRIEQPFR 289

Query: 291 ERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQKP 333
           ERI +N N+ TEEEIEDLC++CGLTNY+ KVQQ+FIMF+AQKP
Sbjct: 290 ERISRNSNFFTEEEIEDLCSTCGLTNYSKKVQQTFIMFSAQKP 332

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072446|gb|ACJ84583.1| unknown [Medicago truncatula]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/326 (73%), Positives = 267/326 (81%), Gaps = 7/326 (2%)

Query: 15  FPKYPCL---SRNSPRL--PQSLRFS--STIRAVTLQPAKSERNQTLELEGDLFSCPICY 67
           FPK P L   S   PRL   Q+ RF+  +T   V   P      +    + DLF+CPICY
Sbjct: 17  FPKCPHLFTKSHFHPRLLRSQTQRFNIRATSAVVVDSPLDLSTKKDQGTQVDLFACPICY 76

Query: 68  EPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFR 127
           EPLIRKGP GL L AIYRSGFKC++C K+Y+SKD YLDLTV SGL+DY EV+P  TELFR
Sbjct: 77  EPLIRKGPIGLNLPAIYRSGFKCKRCQKSYTSKDGYLDLTVTSGLRDYVEVQPNRTELFR 136

Query: 128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS 187
           SP VSFLYERGWRQNF +SGFPGPDEEF+MAQEYF+ A+GG +VDVSCGSGLFSRKFAKS
Sbjct: 137 SPLVSFLYERGWRQNFRQSGFPGPDEEFRMAQEYFEPAKGGRIVDVSCGSGLFSRKFAKS 196

Query: 188 GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 247
           GTYSGV+ALDFSENMLRQCYDFIK+D+T+ T+NLALVRADV RLPF SG VDAVHAGAAL
Sbjct: 197 GTYSGVIALDFSENMLRQCYDFIKKDDTLSTTNLALVRADVSRLPFESGSVDAVHAGAAL 256

Query: 248 HCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIED 307
           HCWPSPSNAVAEI+R+LRSGGVFVGTTFLRYTSSTS   R+ RER    Y YLTEEEI+D
Sbjct: 257 HCWPSPSNAVAEITRVLRSGGVFVGTTFLRYTSSTSWVARLFRERSSLGYGYLTEEEIKD 316

Query: 308 LCTSCGLTNYTSKVQQSFIMFAAQKP 333
           LCTSCGLTNY+ K+Q+SFIMF AQKP
Sbjct: 317 LCTSCGLTNYSCKIQKSFIMFTAQKP 342

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463049|ref|XP_002268107.1| PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic [Vitis vinifera] gi|296084558|emb|CBI25579.3| unnamed protein product [Vitis vinifera]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 248/344 (72%), Positives = 278/344 (80%), Gaps = 16/344 (4%)

Query: 3   IAAAAASSSSSLFPKYPCLSRNS----PRLPQSLRFSSTIRA---VTLQPAKSER-NQTL 54
           +A A++S    +FP+YP LSR+S    P    SLRF S IRA   V L+P  S + N  L
Sbjct: 1   MATASSSLHQPIFPQYPSLSRSSRFHPPLRLSSLRFPSRIRASSAVALEPESSTQLNNGL 60

Query: 55  ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKD 114
           E   DLFSCP+CYEPLIRKGP GL L AIYRSGFKCR C+K+YSSKD YLDLT+ +G KD
Sbjct: 61  EF--DLFSCPVCYEPLIRKGPPGLNLPAIYRSGFKCRSCNKSYSSKDMYLDLTITAGSKD 118

Query: 115 YTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVS 174
           Y E++P  TELFRSP VSFLYERGWRQNFN+SGFPG DEEFKMAQEYF+   GGLLVDVS
Sbjct: 119 YNELQPNRTELFRSPLVSFLYERGWRQNFNQSGFPGRDEEFKMAQEYFEPVIGGLLVDVS 178

Query: 175 CGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL-TSNLALVRADVCRLPF 233
           CGSGLFSRKFA+SGTYSGVVALDFSENMLRQCYDFIK++N  L T+NLALVRADV RLPF
Sbjct: 179 CGSGLFSRKFAESGTYSGVVALDFSENMLRQCYDFIKKENPALATTNLALVRADVSRLPF 238

Query: 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR--- 290
           ++G VDAVHAGAALHCWPSPSNAVAEI+RILRSGG+FVGTTFLR +   S    +LR   
Sbjct: 239 STGSVDAVHAGAALHCWPSPSNAVAEITRILRSGGIFVGTTFLRPSFGNSSITSILRPFR 298

Query: 291 --ERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQK 332
             ER LQNYN LTE+EIEDLCTSCGL NY SKVQ+SFIMF+AQK
Sbjct: 299 QWERSLQNYNNLTEKEIEDLCTSCGLINYRSKVQRSFIMFSAQK 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516609|gb|AFK46366.1| unknown [Medicago truncatula]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/326 (72%), Positives = 266/326 (81%), Gaps = 7/326 (2%)

Query: 15  FPKYPCL---SRNSPRL--PQSLRFS--STIRAVTLQPAKSERNQTLELEGDLFSCPICY 67
           FPK P L   S   PRL   Q+ RF+  +T   V   P      +    + DLF+CPICY
Sbjct: 17  FPKCPHLFTKSHFHPRLLRSQTQRFNIRATSAVVVDSPLDLSTKKDQGTQVDLFACPICY 76

Query: 68  EPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFR 127
           EPLIRKGP GL L AIYRSGFKC++C K+Y+SKD YLDLTV SGL+DY EV+P  TELFR
Sbjct: 77  EPLIRKGPIGLNLPAIYRSGFKCKRCQKSYTSKDGYLDLTVTSGLRDYVEVQPNRTELFR 136

Query: 128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS 187
           SP VSFLYERGWRQNF +SGFPGPDEEF+MAQEYF+ A+GG +VDVSCGSGLFSRKFAKS
Sbjct: 137 SPLVSFLYERGWRQNFRQSGFPGPDEEFRMAQEYFEPAKGGRIVDVSCGSGLFSRKFAKS 196

Query: 188 GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL 247
           GTYSGV+ALDFSENMLRQCYDFIK+D+T+ T+NLALVRADV RLPF SG VDAVHAGAAL
Sbjct: 197 GTYSGVIALDFSENMLRQCYDFIKKDDTLSTTNLALVRADVSRLPFESGSVDAVHAGAAL 256

Query: 248 HCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIED 307
           HCWPSPSNAVAEI+R+LRSGGVFVGTTF RYTSSTS   R+ RER    Y YLTEEEI+D
Sbjct: 257 HCWPSPSNAVAEITRVLRSGGVFVGTTFFRYTSSTSWVARLFRERSSLGYGYLTEEEIKD 316

Query: 308 LCTSCGLTNYTSKVQQSFIMFAAQKP 333
           LCTSCGLTNY+ K+Q+SFIMF AQKP
Sbjct: 317 LCTSCGLTNYSCKIQKSFIMFTAQKP 342

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463051|ref|XP_002268200.1| PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic-like [Vitis vinifera]

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/340 (71%), Positives = 269/340 (79%), Gaps = 11/340 (3%)

Query: 3   IAAAAASSSSSLFPKYPCLSRNSPRL--PQ--SLRFSSTIRA---VTLQPAKSERNQTLE 55
           +A AA+     LFPKYP L   S  +  PQ  SL F S  RA   V L+P  S +    +
Sbjct: 1   MAMAASFLHQPLFPKYPFLLHKSQFISRPQISSLPFPSRFRASSAVALEPESSPQLNN-D 59

Query: 56  LEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDY 115
           ++ DLFSCP+CYEPLIRKGP GL L AIYRSGFKC+ C+K+YSSKD YLDLT+ +G K Y
Sbjct: 60  MDFDLFSCPVCYEPLIRKGPPGLNLPAIYRSGFKCKTCNKSYSSKDMYLDLTITAGSKAY 119

Query: 116 TEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSC 175
            E +P  TELFRSP VSFLYERGWRQNFN  GFPGPDEEFKMAQEYFK A GGLLVDVSC
Sbjct: 120 NEAQPVRTELFRSPLVSFLYERGWRQNFNLRGFPGPDEEFKMAQEYFKPAAGGLLVDVSC 179

Query: 176 GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS 235
           GSGLFSRKFA+SGTYSGVVALDFSENML QCYDFIK+DN  LT+NLALVRAD+ RLPF+S
Sbjct: 180 GSGLFSRKFAESGTYSGVVALDFSENMLHQCYDFIKKDNPSLTTNLALVRADISRLPFSS 239

Query: 236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR--YT-SSTSLTGRVLRER 292
           G VDAVHAGAALHCWPSPSNAVAEI+RILRSGG+FVGTTFLR  YT SS     R  R+ 
Sbjct: 240 GSVDAVHAGAALHCWPSPSNAVAEITRILRSGGIFVGTTFLRPIYTNSSIPAILRPFRQS 299

Query: 293 ILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQK 332
           ILQ  NYLTE+EIEDLC SC L NYTS +QQSFIMF+AQK
Sbjct: 300 ILQTSNYLTEKEIEDLCRSCALINYTSTIQQSFIMFSAQK 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084557|emb|CBI25578.3| unnamed protein product [Vitis vinifera]

 Score =  473 bits (1218), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/337 (71%), Positives = 267/337 (79%), Gaps = 11/337 (3%)

Query: 6   AAASSSSSLFPKYPCLSRNSPRL--PQ--SLRFSSTIRA---VTLQPAKSERNQTLELEG 58
           AA+     LFPKYP L   S  +  PQ  SL F S  RA   V L+P  S +    +++ 
Sbjct: 2   AASFLHQPLFPKYPFLLHKSQFISRPQISSLPFPSRFRASSAVALEPESSPQLNN-DMDF 60

Query: 59  DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEV 118
           DLFSCP+CYEPLIRKGP GL L AIYRSGFKC+ C+K+YSSKD YLDLT+ +G K Y E 
Sbjct: 61  DLFSCPVCYEPLIRKGPPGLNLPAIYRSGFKCKTCNKSYSSKDMYLDLTITAGSKAYNEA 120

Query: 119 KPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSG 178
           +P  TELFRSP VSFLYERGWRQNFN  GFPGPDEEFKMAQEYFK A GGLLVDVSCGSG
Sbjct: 121 QPVRTELFRSPLVSFLYERGWRQNFNLRGFPGPDEEFKMAQEYFKPAAGGLLVDVSCGSG 180

Query: 179 LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV 238
           LFSRKFA+SGTYSGVVALDFSENML QCYDFIK+DN  LT+NLALVRAD+ RLPF+SG V
Sbjct: 181 LFSRKFAESGTYSGVVALDFSENMLHQCYDFIKKDNPSLTTNLALVRADISRLPFSSGSV 240

Query: 239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR--YT-SSTSLTGRVLRERILQ 295
           DAVHAGAALHCWPSPSNAVAEI+RILRSGG+FVGTTFLR  YT SS     R  R+ ILQ
Sbjct: 241 DAVHAGAALHCWPSPSNAVAEITRILRSGGIFVGTTFLRPIYTNSSIPAILRPFRQSILQ 300

Query: 296 NYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQK 332
             NYLTE+EIEDLC SC L NYTS +QQSFIMF+AQK
Sbjct: 301 TSNYLTEKEIEDLCRSCALINYTSTIQQSFIMFSAQK 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
TAIR|locus:2063218	352	AT2G41040 [Arabidopsis thalian	0.903	0.855	0.695	7.3e-114
TAIR|locus:2194759	355	AT1G78140 [Arabidopsis thalian	0.849	0.797	0.527	6.3e-76
UNIPROTKB|G5EGY9	380	MGCH7_ch7g116 "Sterol 24-C-met	0.396	0.347	0.321	1.3e-07
POMBASE|SPBC16E9.05	378	erg6 "sterol 24-C-methyltransf	0.537	0.473	0.269	3.7e-07
UNIPROTKB|Q5LVS6	208	SPO0620 "Uncharacterized prote	0.417	0.668	0.294	5.1e-07
TIGR_CMR|SPO_0620	208	SPO_0620 "conserved hypothetic	0.417	0.668	0.294	5.1e-07
UNIPROTKB|Q3AB55	244	menG "Demethylmenaquinone meth	0.300	0.409	0.330	1.6e-06
TIGR_CMR|CHY_1809	244	CHY_1809 "2-heptaprenyl-1,4-na	0.300	0.409	0.330	1.6e-06
SGD|S000004467	383	ERG6 "Delta(24)-sterol C-methy	0.450	0.391	0.281	5.1e-06
TIGR_CMR|BA_2890	258	BA_2890 "methyltransferase, Ub	0.345	0.445	0.278	5.8e-06

TAIR|locus:2063218 AT2G41040 [Arabidopsis thaliana (taxid:3702)]

 Score = 1123 (400.4 bits), Expect = 7.3e-114, P = 7.3e-114
 Identities = 212/305 (69%), Positives = 250/305 (81%)

Query:    33 RFSSTIRAVTLQPAKSERNQT--LELEG-DLFSCPICYEPLIRKGPTGLTLGAIYRSGFK 89
             RF S   +     +   +N+T  +E+E   +F+CP+CYEPL+RKGP+G+ L AIYRSGFK
Sbjct:    48 RFPSAAISAVAPKSDINKNETPKIEIEETQVFACPVCYEPLMRKGPSGINLQAIYRSGFK 107

Query:    90 CRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFP 149
             C +C+KTYSSKD YLDLTV + L DY EVKP +TELFRSP VSFLYERGWRQ F RSGFP
Sbjct:   108 CGQCNKTYSSKDEYLDLTVTADLDDYNEVKPITTELFRSPLVSFLYERGWRQAFKRSGFP 167

Query:   150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
             GPDEEF+MA+EYFK A+GGLLVDVSCGSGLFSRKFA+SG YSGV+ALD+SENMLRQC +F
Sbjct:   168 GPDEEFRMAEEYFKEAEGGLLVDVSCGSGLFSRKFAQSGKYSGVIALDYSENMLRQCKEF 227

Query:   210 IKQDNTILTS-NLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
             IK DNT   S N+A+VRADV RLPF SG VDAVHAGAALHCWPSP+NA+AEI R+LRSGG
Sbjct:   228 IKNDNTFDNSTNIAVVRADVSRLPFPSGSVDAVHAGAALHCWPSPTNAIAEICRVLRSGG 287

Query:   269 VFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMF 328
             VFVGTTFLRY+ ST    R  + RILQ+YNYL ++EI+D+CTSCGLT+Y   +Q SFIMF
Sbjct:   288 VFVGTTFLRYSPSTPWIIRPFQSRILQSYNYLMQDEIKDVCTSCGLTDYEDYIQDSFIMF 347

Query:   329 AAQKP 333
              A+KP
Sbjct:   348 TARKP 352

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2194759 AT1G78140 [Arabidopsis thaliana (taxid:3702)]

 Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
 Identities = 155/294 (52%), Positives = 198/294 (67%)

Query:    47 KSERNQTLELEGDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLD 105
             K ++N+    E  + +CPICY  L     P GL   A      +C  C ++YS  + +LD
Sbjct:    65 KKDKNRG---EKKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLD 121

Query:   106 LTVISGLKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSA 165
             L V SG K Y+E  P STELFR+P VSFLYERGWRQNF   GFPGP++EF+MA+ Y K  
Sbjct:   122 LAVASGSKRYSEPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPV 181

Query:   166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI-KQDNTILTSNLALV 224
              GG ++D SCGSG+FSR F +S  +S V+ALD+SENMLRQCY+ + K++N      L LV
Sbjct:   182 LGGNIIDASCGSGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLV 241

Query:   225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL 284
             RAD+ RLPF SG VDAVHAGAALHCWPSPS+AVAEISR+LR GGVFV TTF+ Y    S 
Sbjct:   242 RADIARLPFLSGSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFI-YDGPFSF 300

Query:   285 TG--RVLRERILQ---NYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQKP 333
                 + LR+ I++   ++ +L E E+ED+C +CGL N+T      FIM +A KP
Sbjct:   301 IPFLKNLRQEIMRYSGSHIFLNERELEDICKACGLVNFTRVRNGPFIMLSATKP 354

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010287 "plastoglobule" evidence=IDA

UNIPROTKB|G5EGY9 MGCH7_ch7g116 "Sterol 24-C-methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 147 (56.8 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 47/146 (32%), Positives = 74/146 (50%)

Query:   134 LYERGWRQNFNRSGFPGPDEEFKMA---QEYFKSAQGGL-----LVDVSCGSGLFSRKFA 185
             +YE GW Q+F+   F   +E F  A    E++ + Q G+     ++DV CG G  +R+ A
Sbjct:    90 IYEYGWGQSFHFCRF-SHNESFYQAIARHEHYLAHQIGIKEGMTVLDVGCGVGGPAREIA 148

Query:   186 KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA-G 244
             K  T   VV L+ ++  + +   + KQ+   L S L  V+ D  ++ F     DAV+A  
Sbjct:   149 KF-TGCNVVGLNNNDYQIDRATHYAKQEK--LDSQLQFVKGDFMQMSFPDESFDAVYAIE 205

Query:   245 AALHCWPSPSNAVAEISRILRSGGVF 270
             A +H  P      +EI R+L+ GG F
Sbjct:   206 ATVHA-PKLEGVYSEIFRVLKPGGTF 230

GO:0005575 "cellular_component" evidence=ND

POMBASE|SPBC16E9.05 erg6 "sterol 24-C-methyltransferase Erg6" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 143 (55.4 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 53/197 (26%), Positives = 87/197 (44%)

Query:   134 LYERGWRQNFNRSGFPGPDEEFKMA---QEYFKSAQGGL-----LVDVSCGSGLFSRKFA 185
             LYE GW Q+F+ S F    E F  +    E++ + + G+     ++DV CG G  +R+  
Sbjct:    85 LYEYGWSQSFHFSRFY-KGEAFAQSIARHEHYLAYRMGIKPGSRVLDVGCGVGGPAREIT 143

Query:   186 KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA-G 244
             +  T   +V L+ ++  + +C ++  + N  L      V+ D   +PF     D V+A  
Sbjct:   144 EF-TGCNLVGLNNNDYQISRCNNYAVKRN--LDKKQVFVKGDFMHMPFEDNTFDYVYAIE 200

Query:   245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEE 304
             A +H  PS      EI R+L+ GGVF G     +  S      + + R +  YN    + 
Sbjct:   201 ATVHA-PSLEGVYGEIFRVLKPGGVF-GV--YEWVMSDDYDSSIPKHREIA-YNIEVGDG 255

Query:   305 IEDLCTSCGLTNYTSKV 321
             I  +   C       KV
Sbjct:   256 IPQMVRKCDAVEAIKKV 272

GO:0003838 "sterol 24-C-methyltransferase activity" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006696 "ergosterol biosynthetic process" evidence=ISO;IMP

GO:0071210 "protein insertion into membrane raft" evidence=IMP

GO:0090002 "establishment of protein localization to plasma membrane" evidence=IMP

GO:0006623 "protein targeting to vacuole" evidence=IMP

GO:0006897 "endocytosis" evidence=IMP

UNIPROTKB|Q5LVS6 SPO0620 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 134 (52.2 bits), Expect = 5.1e-07, P = 5.1e-07
 Identities = 45/153 (29%), Positives = 73/153 (47%)

Query:   158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL 217
             A  +   A G  L+D+ CG G    +  +    SG V +DFSE ML++     +  + + 
Sbjct:    37 ALSFLDLADGDSLIDIGCGHGETLFQADRIVRLSGSVGVDFSEVMLKRAR--ARNRDAVW 94

Query:   218 TSNLALVRADVCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274
              + +A   AD   LPF     G   +VH    ++ WP+P+  +AE  R+LR GG F+   
Sbjct:    95 DTRMAFHCADTAALPFPDKRFGKALSVHT---IYFWPNPAAHLAEAFRVLRRGGRFL--- 148

Query:   275 FLRYTSSTSLTGRVLRERILQNYNYLTEEEIED 307
             F  Y S+     R + E     Y + + +E+E+
Sbjct:   149 FC-YRSTADR--RAVEEFPDTVYRFPSVQEVEE 178

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_0620 SPO_0620 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 134 (52.2 bits), Expect = 5.1e-07, P = 5.1e-07
 Identities = 45/153 (29%), Positives = 73/153 (47%)

Query:   158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL 217
             A  +   A G  L+D+ CG G    +  +    SG V +DFSE ML++     +  + + 
Sbjct:    37 ALSFLDLADGDSLIDIGCGHGETLFQADRIVRLSGSVGVDFSEVMLKRAR--ARNRDAVW 94

Query:   218 TSNLALVRADVCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274
              + +A   AD   LPF     G   +VH    ++ WP+P+  +AE  R+LR GG F+   
Sbjct:    95 DTRMAFHCADTAALPFPDKRFGKALSVHT---IYFWPNPAAHLAEAFRVLRRGGRFL--- 148

Query:   275 FLRYTSSTSLTGRVLRERILQNYNYLTEEEIED 307
             F  Y S+     R + E     Y + + +E+E+
Sbjct:   149 FC-YRSTADR--RAVEEFPDTVYRFPSVQEVEE 178

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3AB55 menG "Demethylmenaquinone methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 133 (51.9 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 34/103 (33%), Positives = 52/103 (50%)

Query:   167 GGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
             GG  +DV+CG+G+F+ + A+  G    VV LDF+ENML      I + +  +   + LV 
Sbjct:    52 GGRGLDVACGTGMFAIELARVVGPTGEVVGLDFNENMLEVARKNIARYS--MEKIIKLVH 109

Query:   226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
              +   LPF     D    G AL   P     + E+ R+++ GG
Sbjct:   110 GNALALPFPDNSFDVATIGFALRNVPDIEKTILEMKRVVKPGG 152

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

TIGR_CMR|CHY_1809 CHY_1809 "2-heptaprenyl-1,4-naphthoquinone methyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 133 (51.9 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 34/103 (33%), Positives = 52/103 (50%)

Query:   167 GGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
             GG  +DV+CG+G+F+ + A+  G    VV LDF+ENML      I + +  +   + LV 
Sbjct:    52 GGRGLDVACGTGMFAIELARVVGPTGEVVGLDFNENMLEVARKNIARYS--MEKIIKLVH 109

Query:   226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
              +   LPF     D    G AL   P     + E+ R+++ GG
Sbjct:   110 GNALALPFPDNSFDVATIGFALRNVPDIEKTILEMKRVVKPGG 152

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

SGD|S000004467 ERG6 "Delta(24)-sterol C-methyltransferase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 133 (51.9 bits), Expect = 5.1e-06, P = 5.1e-06
 Identities = 47/167 (28%), Positives = 81/167 (48%)

Query:   112 LKDYTEVKPASTELFRSPFVSFLYERGWRQNFNRSGF-PGPDEEFKMA--QEY--FKSA- 165
             L+DY E    +T  + +    F YE GW  +F+ S F  G      +A  + Y  +K+  
Sbjct:    63 LEDYNE----ATHSYYNVVTDF-YEYGWGSSFHFSRFYKGESFAASIARHEHYLAYKAGI 117

Query:   166 -QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
              +G L++DV CG G  +R+ A+  T   V+ L+ ++  + +   + K+ N  L+  +  V
Sbjct:   118 QRGDLVLDVGCGVGGPAREIARF-TGCNVIGLNNNDYQIAKAKYYAKKYN--LSDQMDFV 174

Query:   225 RADVCRLPFASGFVDAVHA-GAALHCWPSPSNAVAEISRILRSGGVF 270
             + D  ++ F     D V+A  A  H  P      +EI ++L+ GG F
Sbjct:   175 KGDFMKMDFEENTFDKVYAIEATCHA-PKLEGVYSEIYKVLKPGGTF 220

GO:0003838 "sterol 24-C-methyltransferase activity" evidence=IEA;IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016126 "sterol biosynthetic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006696 "ergosterol biosynthetic process" evidence=IMP

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008202 "steroid metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

TIGR_CMR|BA_2890 BA_2890 "methyltransferase, UbiE/COQ5 family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 129 (50.5 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 34/122 (27%), Positives = 58/122 (47%)

Query:   150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
             GPD ++ + Q   +S     L+D++ G G  +   A    +  VVALD +E ML     F
Sbjct:    27 GPDLQYVVQQ--VESRHNNRLLDIATGGGHVANVLAP--LFKEVVALDLTEKMLENAKKF 82

Query:   210 IKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGV 269
             I  +      N++ V  +   LPF+    D +    A H + +P+  + E++R L   G+
Sbjct:    83 IISNGH---ENVSFVAGNAESLPFSDSSFDTITCRIAAHHFTNPAQFIYEVNRTLEDNGL 139

Query:   270 FV 271
             F+
Sbjct:   140 FI 141

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0009108 "coenzyme biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WPT7	Y2104_ARATH	2, ., 1, ., 1, ., -	0.6918	0.9039	0.8551	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	333
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	4e-22
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	6e-16
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	1e-14
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	5e-14
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	7e-13
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	3e-12
TIGR01934	223	TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone	7e-12
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	4e-11
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	7e-11
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	3e-09
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	1e-08
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	2e-08
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	3e-07
pfam01209	233	pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf	3e-07
PRK05785	226	PRK05785, PRK05785, hypothetical protein; Provisio	1e-06
PLN02233	261	PLN02233, PLN02233, ubiquinone biosynthesis methyl	1e-06
PRK10258	251	PRK10258, PRK10258, biotin biosynthesis protein Bi	2e-06
TIGR02752	231	TIGR02752, MenG_heptapren, demethylmenaquinone met	2e-06
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	2e-04
COG2230	283	COG2230, Cfa, Cyclopropane fatty acid synthase and	0.002

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 88.5 bits (220), Expect = 4e-22
 Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 10/101 (9%)

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           +DV CG+GL +   A+ G    V  +D S  ML               +    V  D   
Sbjct: 1   LDVGCGTGLLAEALARRGGAR-VTGVDLSPEMLALARKR---------APRKFVVGDAED 50

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
           LPF     D V +   LH  P P  A+ EI+R+L+ GG  V
Sbjct: 51  LPFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 75.8 bits (187), Expect = 6e-16
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 22/143 (15%)

Query: 172 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231
           D+ CG+G  +R   K    +  +A D S  ML Q         T L+ N+  +  D  +L
Sbjct: 40  DIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQA-------KTKLSENVQFICGDAEKL 92

Query: 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE 291
           P      D + +  AL      S A++E++R+L+ GG+   +TF   T         L E
Sbjct: 93  PLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGT---------LHE 143

Query: 292 RILQNY-----NYLTEEEIEDLC 309
            + Q++      YL+ +E++ L 
Sbjct: 144 -LRQSFGQHGLRYLSLDELKALL 165

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 40/103 (38%), Positives = 53/103 (51%), Gaps = 5/103 (4%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G  ++DV CG G  +R+ A+     G VV +D SE ML       K+    L  N+  VR
Sbjct: 20  GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAML----ALAKERAAGLGPNVEFVR 75

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
            D   LPF  G  DAV +   L     P+ A+AEI+R+LR GG
Sbjct: 76  GDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGG 118

Length = 241

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 70.2 bits (173), Expect = 5e-14
 Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 9/120 (7%)

Query: 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENML---RQCYDFIK 211
           +   ++     G  ++D++CG+G  +   AK+   +G VV LDFSE ML   R+     K
Sbjct: 41  RKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGRE-----K 95

Query: 212 QDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
             +  L+ N+  V+ D   LPF     DAV     L   P    A+ E+ R+L+ GG  V
Sbjct: 96  LRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLV 155

Length = 239

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 66.9 bits (164), Expect = 7e-13
 Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 5/112 (4%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD-FIKQDNTILTSNLALVR 225
           G  ++DV+CG+G  +   AKS     VV LD SE+ML    +   K+       N+  V 
Sbjct: 52  GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV----QNVEFVV 107

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR 277
            D   LPF     DAV     L        A+ E+ R+L+ GG  +   F +
Sbjct: 108 GDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK 159

Length = 238

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 61.6 bits (150), Expect = 3e-12
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           +D+ CG+G   R   ++        +D S   L    + +     +    + L   D   
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVF 270
           L   S   D V A   LH    P   +  + R+L+ GGV 
Sbjct: 61  LDPGS--FDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases

 Score = 63.8 bits (156), Expect = 7e-12
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 21/143 (14%)

Query: 130 FVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT 189
            +SF   R WR+   +       ++               ++DV+CG+G  + + AKS  
Sbjct: 18  LLSFGLHRLWRRRAVKLIGVFKGQK---------------VLDVACGTGDLAIELAKSAP 62

Query: 190 YSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH 248
             G V  +DFS  ML      + +  + L  N+  ++AD   LPF     DAV     L 
Sbjct: 63  DRGKVTGVDFSSEMLE-----VAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLR 117

Query: 249 CWPSPSNAVAEISRILRSGGVFV 271
                  A+ E+ R+L+ GG  V
Sbjct: 118 NVTDIQKALREMYRVLKPGGRLV 140

This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 58.9 bits (143), Expect = 4e-11
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENML---RQCYDFIKQDNTILTSNLA 222
            G  ++D+ CG+G  + + A+    + V  +D S  ML   R+               + 
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGP------RIT 54

Query: 223 LVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
            V+ D           DAV  G            +  ++ +L+ GG  V
Sbjct: 55  FVQGDAPDALDLLEGFDAVFIGGGGGDLL---ELLDALASLLKPGGRLV 100

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 59.4 bits (144), Expect = 7e-11
 Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 19/155 (12%)

Query: 163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA 222
           +   GG ++D+ CG+G+  R   + G    V  +D S   +     F   D  +L     
Sbjct: 19  RLKPGGRVLDIGCGTGILLRLLRERGFD--VTGVDPSPAAVLIFSLFDAPDPAVL----- 71

Query: 223 LVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST 282
                       +G  D + A   L   P P   + ++  +L+ GGV + +T L    + 
Sbjct: 72  ------------AGKYDLITAFEVLEHLPDPPALLQQLRELLKPGGVLLISTPLADDDAR 119

Query: 283 SLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNY 317
                        + ++ +EE ++ L    G    
Sbjct: 120 LFANWHYLRPRNTHISFYSEESLKRLLEKAGFELV 154

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 6/109 (5%)

Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++D+ CG+G  +   A       V  +D S   L       K    +L  N+ +++ D  
Sbjct: 2   VLDLGCGTGALALALASGPGAR-VTGVDISPVALELAR---KAAAALLADNVEVLKGDAE 57

Query: 230 RLPF-ASGFVDAVHAGAALHCWP-SPSNAVAEISRILRSGGVFVGTTFL 276
            LP  A    D + +   LH      +  + E  R+L+ GGV V T  L
Sbjct: 58  ELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTLVL 106

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 54.9 bits (129), Expect = 1e-08
 Identities = 37/188 (19%), Positives = 57/188 (30%), Gaps = 6/188 (3%)

Query: 123 TELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSR 182
            EL       +         F        D    +          G+L D+ CG+G  + 
Sbjct: 6   AELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVL-DIGCGTGRLAL 64

Query: 183 KFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFASGFVDA 240
                G  + VV +D S  ML       +         +  V AD     LPF       
Sbjct: 65  LARLGGRGAYVVGVDLSPEMLALARARAEGAGL---GLVDFVVADALGGVLPFEDSASFD 121

Query: 241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYL 300
           +     +     P+ A+ E+ R+L+ GG  V +  LR          +L           
Sbjct: 122 LVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEGRLAALLGFGDPVLERGD 181

Query: 301 TEEEIEDL 308
              E+E L
Sbjct: 182 ILLELEAL 189

Length = 257

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++D+ CG+G   R  A++G  S V  +D S+  L    + ++     +      V AD  
Sbjct: 1   ILDLGCGTGRVLRALARAG-PSSVTGVDISKEALELAKERLRDKGPKVR----FVVADAR 55

Query: 230 RLPFASGFVDAVH-AGAALHCWPSPS--NAVAEISRILRSGG 268
            LPF  G  D V  AG +L           + E +R+LR GG
Sbjct: 56  DLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 170 LVDVSCGSGLFSRKFA-KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV 228
           ++D+ CG+G  +   A K G  + VV +D SE  + +      +       N+  ++ D+
Sbjct: 7   VLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAI-EKAKENAKKLGY--ENVEFIQGDI 63

Query: 229 CRLP---FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
             LP         D V +   L+  P P   + EI R+L+ GGV +
Sbjct: 64  EELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLI 109

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G   +DV+ G+G ++   + S   SG VV LD +ENML++     K++      N+  ++
Sbjct: 48  GNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKY---NIEFLQ 104

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
            +   LPF     D V     L  +P     + E  R+L+ GG  V
Sbjct: 105 GNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVV 150

Length = 233

>gnl|CDD|235607 PRK05785, PRK05785, hypothetical protein; Provisional

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 22/103 (21%)

Query: 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD 227
             ++DV+ G G  S  F K   Y  VVALD++ENML+                + LV  D
Sbjct: 53  KKVLDVAAGKGELSYHFKKVFKYY-VVALDYAENMLK----------------MNLVADD 95

Query: 228 --VC---RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILR 265
             V     LPF     D V +  ALH   +    +AE +R+ R
Sbjct: 96  KVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSR 138

Length = 226

>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 45/187 (24%), Positives = 70/187 (37%), Gaps = 32/187 (17%)

Query: 156 KMAQEYFKSAQGGLLVDVSCGSG----LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK 211
           +MA  +  +  G  ++D+ CGSG    L S K    G    V+ LDFS   L       +
Sbjct: 63  RMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGK---VMGLDFSSEQLAVAASRQE 119

Query: 212 QDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
                   N+  +  D   LPF   + DA+  G  L        A+ E+ R+L+ G    
Sbjct: 120 LKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGS--- 176

Query: 272 GTTFLRYTSSTSLTGRVLRERILQNY----------------------NYLTEEEIEDLC 309
             + L +  ST      ++E ++ N                        YLT EE+E L 
Sbjct: 177 RVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLA 236

Query: 310 TSCGLTN 316
              G ++
Sbjct: 237 LEAGFSS 243

Length = 261

>gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 10/105 (9%)

Query: 172 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231
           D  CG G  SR + + G  S V ALD S  ML Q       D+ +          D+  L
Sbjct: 48  DAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQKDAADHYLA--------GDIESL 97

Query: 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL 276
           P A+   D   +  A+    + S A+ E+ R++R GGV   TT +
Sbjct: 98  PLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142

Length = 251

>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 4/107 (3%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
            G   +DV CG+  +S   A++    G V+ LDFSENML      +K        N+ LV
Sbjct: 45  AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL---HNVELV 101

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
             +   LPF     D V  G  L   P     + E+ R+++ GG  V
Sbjct: 102 HGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVV 148

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 11/114 (9%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           G  ++D   GSG F    A++G  + VV ++             +     L   + +V  
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALA--RRRLALAGLAPRVRVVVG 58

Query: 227 DVCRLP-FASGFVDAV--------HAGAALHCWPSPSNAVAEISRILRSGGVFV 271
           D   L     G  D V         AG            +A   R+L+ GGV V
Sbjct: 59  DARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLV 112

This family contains methyltransferase domains. Length = 117

>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 35/182 (19%), Positives = 53/182 (29%), Gaps = 24/182 (13%)

Query: 148 FPGPDEEFKMAQ--------EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDF 198
           F  PD   + AQ        E      G  L+D+ CG G  +   A+   Y   VV +  
Sbjct: 46  FEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEE--YGVTVVGVTL 103

Query: 199 SENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA-VHAGA----ALHCWPSP 253
           SE  L      I      L  N+ +   D           D  V  G         +   
Sbjct: 104 SEEQLAYAEKRIAARG--LEDNVEVRLQD---YRDFEEPFDRIVSVGMFEHVGKENYDDF 158

Query: 254 SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCG 313
              V     +L+ GG  +  +              + + I       +  EI +L +  G
Sbjct: 159 FKKV---YALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAG 215

Query: 314 LT 315
             
Sbjct: 216 FV 217

Length = 283

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	333
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.95
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.95
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.92
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.91
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.91
PLN02244	340	tocopherol O-methyltransferase	99.89
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.89
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.88
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.87
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.87
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.87
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.86
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.86
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.86
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.85
PLN02490	340	MPBQ/MSBQ methyltransferase	99.84
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.84
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.84
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.84
PRK05785	226	hypothetical protein; Provisional	99.84
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.84
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.83
PLN02336	475	phosphoethanolamine N-methyltransferase	99.83
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.83
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.82
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.82
PRK08317	241	hypothetical protein; Provisional	99.82
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.81
PRK11207	197	tellurite resistance protein TehB; Provisional	99.81
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.81
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.81
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.8
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.79
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.78
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.77
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.77
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.76
KOG4300	252	consensus Predicted methyltransferase [General fun	99.76
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.76
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.75
PRK06202	232	hypothetical protein; Provisional	99.75
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.74
PRK12335	287	tellurite resistance protein TehB; Provisional	99.74
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.74
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.73
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.72
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.72
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.7
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.69
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.69
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.68
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.68
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.68
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.67
PLN02336	475	phosphoethanolamine N-methyltransferase	99.67
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.67
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.67
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.67
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.66
PRK04266	226	fibrillarin; Provisional	99.66
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.66
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.66
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.66
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.65
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.65
PLN03075	296	nicotianamine synthase; Provisional	99.65
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.64
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.63
KOG1271	227	consensus Methyltransferases [General function pre	99.63
PRK06922	677	hypothetical protein; Provisional	99.62
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.62
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.62
PRK14968	188	putative methyltransferase; Provisional	99.61
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.6
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.58
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.58
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.58
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.58
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.57
KOG2361	264	consensus Predicted methyltransferase [General fun	99.57
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.57
PTZ00146	293	fibrillarin; Provisional	99.56
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.56
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.56
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.56
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.56
PRK14967	223	putative methyltransferase; Provisional	99.56
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.55
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.55
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.55
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.54
PRK07402	196	precorrin-6B methylase; Provisional	99.54
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.53
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.52
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.51
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.5
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.5
TIGR03438	301	probable methyltransferase. This model represents	99.5
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.49
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.47
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.46
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.46
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.46
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.45
PHA03411	279	putative methyltransferase; Provisional	99.45
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.45
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.45
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.44
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.44
COG4123	248	Predicted O-methyltransferase [General function pr	99.44
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.43
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.42
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.42
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	99.41
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	99.4
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.4
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.4
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.39
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.39
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.39
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.38
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.37
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.37
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	99.34
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.33
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.33
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.33
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.32
COG2890	280	HemK Methylase of polypeptide chain release factor	99.32
KOG3010	261	consensus Methyltransferase [General function pred	99.31
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.29
PRK04457	262	spermidine synthase; Provisional	99.28
TIGR00438	188	rrmJ cell division protein FtsJ.	99.27
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.27
PRK00811	283	spermidine synthase; Provisional	99.24
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.24
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.23
PLN02672	1082	methionine S-methyltransferase	99.22
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.22
KOG2940	325	consensus Predicted methyltransferase [General fun	99.21
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	99.2
PRK01581	374	speE spermidine synthase; Validated	99.2
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.17
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.16
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.14
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.14
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.13
COG2521	287	Predicted archaeal methyltransferase [General func	99.13
COG4122	219	Predicted O-methyltransferase [General function pr	99.13
PRK03612	521	spermidine synthase; Provisional	99.12
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	99.1
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	99.09
PHA03412	241	putative methyltransferase; Provisional	99.09
PLN02476	278	O-methyltransferase	99.08
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.07
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.07
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.06
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.05
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.04
PLN02366	308	spermidine synthase	99.03
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.03
KOG2904	328	consensus Predicted methyltransferase [General fun	98.99
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.97
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.97
KOG2899	288	consensus Predicted methyltransferase [General fun	98.96
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.96
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.95
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.95
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.94
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.92
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.91
KOG1331	293	consensus Predicted methyltransferase [General fun	98.9
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.88
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.88
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.88
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.87
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.86
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.86
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.85
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.85
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.84
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.82
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.81
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.77
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.76
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.75
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.74
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.74
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.74
PRK04148	134	hypothetical protein; Provisional	98.73
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.72
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.7
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.69
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.69
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.67
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.65
PLN02823	336	spermine synthase	98.65
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.64
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.62
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.61
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.61
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.6
COG2520	341	Predicted methyltransferase [General function pred	98.59
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.59
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.59
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.56
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.55
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.54
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.52
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.52
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.51
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.5
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.5
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.5
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.44
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.42
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.4
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.39
PRK00536	262	speE spermidine synthase; Provisional	98.38
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.36
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.34
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.33
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	98.32
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.32
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.24
KOG3201	201	consensus Uncharacterized conserved protein [Funct	98.24
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.24
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.24
COG4076	252	Predicted RNA methylase [General function predicti	98.21
COG3897	218	Predicted methyltransferase [General function pred	98.21
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.2
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.19
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.19
COG4798	238	Predicted methyltransferase [General function pred	98.17
KOG2352	482	consensus Predicted spermine/spermidine synthase [	98.16
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.16
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.14
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.12
PF13679	141	Methyltransf_32: Methyltransferase domain	98.12
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.11
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	98.1
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.08
KOG3115	249	consensus Methyltransferase-like protein [General	98.08
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.05
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.05
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	98.0
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.99
PRK11827	60	hypothetical protein; Provisional	97.98
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.93
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.92
KOG2730	263	consensus Methylase [General function prediction o	97.92
COG2835	60	Uncharacterized conserved protein [Function unknow	97.88
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.76
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.64
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.64
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.63
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	97.54
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.46
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.4
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.39
PF03966	68	Trm112p: Trm112p-like protein; InterPro: IPR005651	97.37
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.36
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.28
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.25
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.23
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.21
PRK10742	250	putative methyltransferase; Provisional	97.16
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.01
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.0
PLN02668	386	indole-3-acetate carboxyl methyltransferase	96.96
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.95
COG0286	489	HsdM Type I restriction-modification system methyl	96.85
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	96.81
PF03269	177	DUF268: Caenorhabditis protein of unknown function	96.8
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	96.8
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	96.71
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	96.66
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	96.63
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	96.56
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.34
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.33
COG1568	354	Predicted methyltransferases [General function pre	96.2
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	96.12
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.09
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	96.07
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	95.99
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.98
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	95.93
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	95.9
COG4301	321	Uncharacterized conserved protein [Function unknow	95.8
PF14803	34	Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.	95.77
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	95.75
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	95.73
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	95.72
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	95.71
COG3129	292	Predicted SAM-dependent methyltransferase [General	95.67
COG1198	730	PriA Primosomal protein N' (replication factor Y)	95.54
PRK00420	112	hypothetical protein; Validated	95.52
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	95.42
KOG1501	636	consensus Arginine N-methyltransferase [General fu	95.35
TIGR00595	505	priA primosomal protein N'. All proteins in this f	95.34
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	95.33
PRK11524	284	putative methyltransferase; Provisional	95.33
PHA00626	59	hypothetical protein	95.23
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.22
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	95.2
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	95.19
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	95.16
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	95.05
PRK09678	72	DNA-binding transcriptional regulator; Provisional	95.02
PRK05580	679	primosome assembly protein PriA; Validated	94.99
PRK13699	227	putative methylase; Provisional	94.99
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	94.95
KOG1088	124	consensus Uncharacterized conserved protein [Funct	94.94
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	94.9
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	94.88
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	94.88
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	94.83
PF08274	30	PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01	94.75
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	94.75
PHA01634	156	hypothetical protein	94.73
KOG2352	482	consensus Predicted spermine/spermidine synthase [	94.57
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	94.5
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	94.45
PRK14873	665	primosome assembly protein PriA; Provisional	94.4
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	94.4
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	94.31
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	94.27
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	94.25
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.2
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	94.11
KOG2920	282	consensus Predicted methyltransferase [General fun	94.08
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	94.0
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	93.95
PRK13699	227	putative methylase; Provisional	93.88
PF11781	36	RRN7: RNA polymerase I-specific transcription init	93.75
PRK00432	50	30S ribosomal protein S27ae; Validated	93.73
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	93.71
PF08792	33	A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: I	93.64
KOG2671	421	consensus Putative RNA methylase [Replication, rec	93.53
COG1645	131	Uncharacterized Zn-finger containing protein [Gene	93.48
PF01096	39	TFIIS_C: Transcription factor S-II (TFIIS); InterP	93.43
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	93.32
PRK10220	111	hypothetical protein; Provisional	93.28
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	93.23
COG1656	165	Uncharacterized conserved protein [Function unknow	93.18
PTZ00357	1072	methyltransferase; Provisional	93.13
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	93.07
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	92.79
KOG1227	351	consensus Putative methyltransferase [General func	92.76
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	92.74
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	92.69
PF09862	113	DUF2089: Protein of unknown function (DUF2089); In	92.59
COG4306	160	Uncharacterized protein conserved in bacteria [Fun	92.49
COG1565	370	Uncharacterized conserved protein [Function unknow	92.47
TIGR00686	109	phnA alkylphosphonate utilization operon protein P	92.45
PF09297	32	zf-NADH-PPase: NADH pyrophosphatase zinc ribbon do	92.35
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	92.23
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	92.16
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	92.11
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	92.11
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	91.87
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	91.86
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	91.84
COG3315	297	O-Methyltransferase involved in polyketide biosynt	91.63
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	91.6
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	91.57
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	91.56
PF04606	47	Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: I	91.53
PF01780	90	Ribosomal_L37ae: Ribosomal L37ae protein family; I	91.49
PF14353	128	CpXC: CpXC protein	91.45
smart00661	52	RPOL9 RNA polymerase subunit 9.	90.98
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	90.78
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	90.77
PRK10458	467	DNA cytosine methylase; Provisional	90.72
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	90.7
PLN02586	360	probable cinnamyl alcohol dehydrogenase	90.64
PF13248	26	zf-ribbon_3: zinc-ribbon domain	90.62
TIGR00497	501	hsdM type I restriction system adenine methylase (	90.57
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	90.55
PF02150	35	RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; I	90.37
PF06677	41	Auto_anti-p27: Sjogren's syndrome/scleroderma auto	90.18
COG1779	201	C4-type Zn-finger protein [General function predic	90.16
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	90.07
TIGR03655	53	anti_R_Lar restriction alleviation protein, Lar fa	90.01
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	89.72
COG1326	201	Uncharacterized archaeal Zn-finger protein [Genera	89.62
PLN02740	381	Alcohol dehydrogenase-like	89.62
COG3809	88	Uncharacterized protein conserved in bacteria [Fun	89.45
PF01927	147	Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 T	89.41
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	89.33
COG4888	104	Uncharacterized Zn ribbon-containing protein [Gene	89.32
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	89.32
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	89.26
PF14205	55	Cys_rich_KTR: Cysteine-rich KTR	89.05
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	89.04
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	88.82
PF03119	28	DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc f	88.79
COG3877	122	Uncharacterized protein conserved in bacteria [Fun	88.78
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	88.68
PTZ00255	90	60S ribosomal protein L37a; Provisional	88.68
COG1571	421	Predicted DNA-binding protein containing a Zn-ribb	88.67
TIGR00280	91	L37a ribosomal protein L37a. This model finds euka	88.37
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	88.22
KOG2782	303	consensus Putative SAM dependent methyltransferase	88.21
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	88.19
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	88.14
PF13453	41	zf-TFIIB: Transcription factor zinc-finger	88.08
PF14354	61	Lar_restr_allev: Restriction alleviation protein L	87.8
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	87.75
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	87.65
PRK03976	90	rpl37ae 50S ribosomal protein L37Ae; Reviewed	87.55
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	87.43
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.39
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	87.29
PRK11524	284	putative methyltransferase; Provisional	87.14
PLN00203	519	glutamyl-tRNA reductase	87.08
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	86.96
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	86.93
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	86.79
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	86.74
KOG3507	62	consensus DNA-directed RNA polymerase, subunit RPB	86.66
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	86.65
COG1327	156	Predicted transcriptional regulator, consists of a	86.6
PLN02178	375	cinnamyl-alcohol dehydrogenase	86.53
PF05129	81	Elf1: Transcription elongation factor Elf1 like; I	86.52
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	86.25
PRK14892	99	putative transcription elongation factor Elf1; Pro	86.2
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	86.18
COG1998	51	RPS31 Ribosomal protein S27AE [Translation, riboso	86.11
COG1255	129	Uncharacterized protein conserved in archaea [Func	85.98
PLN02827	378	Alcohol dehydrogenase-like	85.98
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	85.96
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	85.82
smart00531	147	TFIIE Transcription initiation factor IIE.	85.62
PLN02514	357	cinnamyl-alcohol dehydrogenase	85.6
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	85.56
KOG3924	419	consensus Putative protein methyltransferase invol	85.43
TIGR00244	147	transcriptional regulator NrdR. Members of this al	85.32
PF11253	127	DUF3052: Protein of unknown function (DUF3052); In	85.27
PF03811	36	Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR0	85.2
COG2933	358	Predicted SAM-dependent methyltransferase [General	85.08
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	85.02
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	84.85
PHA02998	195	RNA polymerase subunit; Provisional	84.46
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	84.21
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	84.15
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	84.07
COG3677	129	Transposase and inactivated derivatives [DNA repli	84.01
PF14740	289	DUF4471: Domain of unknown function (DUF4471)	83.88
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	83.71
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	83.6
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	83.54
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	83.53
smart00778	37	Prim_Zn_Ribbon Zinc-binding domain of primase-heli	83.4
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	83.38
PF07282	69	OrfB_Zn_ribbon: Putative transposase DNA-binding d	83.31
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	83.21
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	83.03
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	82.92
PHA02768	55	hypothetical protein; Provisional	82.91
COG1096	188	Predicted RNA-binding protein (consists of S1 doma	82.89
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	82.84
PF10083	158	DUF2321: Uncharacterized protein conserved in bact	82.67
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	82.52
PF12760	46	Zn_Tnp_IS1595: Transposase zinc-ribbon domain; Int	82.49
TIGR03831	46	YgiT_finger YgiT-type zinc finger domain. This dom	82.47
KOG2691	113	consensus RNA polymerase II subunit 9 [Transcripti	82.47
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	82.41
PRK08339	263	short chain dehydrogenase; Provisional	82.32
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	81.82
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	81.6
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	81.58
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	81.55
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	81.4
KOG2906	105	consensus RNA polymerase III subunit C11 [Transcri	81.37
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	81.3
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	81.29
PF08273	40	Prim_Zn_Ribbon: Zinc-binding domain of primase-hel	81.29
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	81.17
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	81.17
PRK05978	148	hypothetical protein; Provisional	81.08
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	81.05
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	80.81
PRK08265	261	short chain dehydrogenase; Provisional	80.75
PRK07806	248	short chain dehydrogenase; Provisional	80.67
PRK08324	681	short chain dehydrogenase; Validated	80.56
KOG2918	335	consensus Carboxymethyl transferase [Posttranslati	80.56
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	80.07

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.95  E-value=4e-27  Score=202.92  Aligned_cols=188  Identities=24%  Similarity=0.340  Sum_probs=152.0

Q ss_pred             CcchhHHHHhhHHhhcccCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 019957          128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCY  207 (333)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~  207 (333)
                      |+.+|+..++.|++..               .+.+...++.+|||||||||.++..+++..+.++|+|+|+|+.|++.++
T Consensus        28 n~~~S~g~~~~Wr~~~---------------i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~   92 (238)
T COG2226          28 NDLMSFGLHRLWRRAL---------------ISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAR   92 (238)
T ss_pred             cccccCcchHHHHHHH---------------HHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHH
Confidence            7889999999999743               2334444789999999999999999999976789999999999999999


Q ss_pred             HHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCc--chh
Q 019957          208 DFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST--SLT  285 (333)
Q Consensus       208 ~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--~~~  285 (333)
                      ++....+   ..++.|+.+|++++||+|++||+|++.+.|++++|+.++|+|++|||||||++++.+...+....  ...
T Consensus        93 ~k~~~~~---~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~  169 (238)
T COG2226          93 EKLKKKG---VQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAY  169 (238)
T ss_pred             HHhhccC---ccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHH
Confidence            9998876   34499999999999999999999999999999999999999999999999999999988752211  111


Q ss_pred             hHHHHH-h------------------hhccCCCCCHHHHHHHHHhCCCcEEE--EEEeCeEEEEEEeCC
Q 019957          286 GRVLRE-R------------------ILQNYNYLTEEEIEDLCTSCGLTNYT--SKVQQSFIMFAAQKP  333 (333)
Q Consensus       286 ~~~~~~-~------------------~~~~~~~~t~~~l~~ll~~aGf~~v~--~~~~~~~~~~~a~kp  333 (333)
                      ...+.. .                  ......+.+.+++..+++++||+.+.  ....+...++.+.||
T Consensus       170 ~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K~  238 (238)
T COG2226         170 ILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYKP  238 (238)
T ss_pred             HHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEecC
Confidence            111111 0                  11334577899999999999999776  244556688888876

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.95  E-value=4.6e-28  Score=210.92  Aligned_cols=187  Identities=27%  Similarity=0.445  Sum_probs=92.9

Q ss_pred             CcchhHHHHhhHHhhcccCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHH
Q 019957          128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQC  206 (333)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a  206 (333)
                      |..++++.++.|++.               +.+.+...++.+|||+|||||.++..+++. ++..+|+|+|+|+.|++.|
T Consensus        24 n~~ls~g~~~~wr~~---------------~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a   88 (233)
T PF01209_consen   24 NDLLSFGQDRRWRRK---------------LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVA   88 (233)
T ss_dssp             -------------SH---------------HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHH
T ss_pred             ccccCCcHHHHHHHH---------------HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHH
Confidence            678889999999863               333455667889999999999999999886 5567999999999999999


Q ss_pred             HHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCC------
Q 019957          207 YDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTS------  280 (333)
Q Consensus       207 ~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~------  280 (333)
                      +++....+   ..+++++++|++++|+++++||+|++.+.|++++|+.+.|+|++|+|||||++++.+...+..      
T Consensus        89 ~~k~~~~~---~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~  165 (233)
T PF01209_consen   89 RKKLKREG---LQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRAL  165 (233)
T ss_dssp             HHHHHHTT-----SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHH
T ss_pred             HHHHHhhC---CCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhce
Confidence            99998876   459999999999999999999999999999999999999999999999999999999887522      


Q ss_pred             -------CcchhhHHHHHh-------hhccCCCCCHHHHHHHHHhCCCcEEEE--EEeCeEEEEEEeC
Q 019957          281 -------STSLTGRVLRER-------ILQNYNYLTEEEIEDLCTSCGLTNYTS--KVQQSFIMFAAQK  332 (333)
Q Consensus       281 -------~~~~~~~~~~~~-------~~~~~~~~t~~~l~~ll~~aGf~~v~~--~~~~~~~~~~a~k  332 (333)
                             ..|+++..+...       ......+.+.+++.++++++||+.++.  ...+...+++|.|
T Consensus       166 ~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K  233 (233)
T PF01209_consen  166 YKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK  233 (233)
T ss_dssp             HHH-----------------------------------------------------------------
T ss_pred             eeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence                   112212111110       013345677899999999999997764  3455557777765

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.92  E-value=1.3e-23  Score=186.85  Aligned_cols=173  Identities=23%  Similarity=0.302  Sum_probs=130.1

Q ss_pred             HHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCC
Q 019957          159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (333)
Q Consensus       159 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (333)
                      .+.+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.|++.|+++..........++.++++|++++|+++++
T Consensus        66 ~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~s  145 (261)
T PLN02233         66 VSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCY  145 (261)
T ss_pred             HHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCC
Confidence            33455566789999999999999988876 45569999999999999998775421100145799999999999999999


Q ss_pred             cceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCC-cchhhHHHHH------------------hhhccCC
Q 019957          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSS-TSLTGRVLRE------------------RILQNYN  298 (333)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-~~~~~~~~~~------------------~~~~~~~  298 (333)
                      ||+|++..+++|++|+..+++++.|+|||||.+++.++...... .+.+..++..                  ......+
T Consensus       146 fD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~  225 (261)
T PLN02233        146 FDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINE  225 (261)
T ss_pred             EeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999998764211 1111111100                  0012245


Q ss_pred             CCCHHHHHHHHHhCCCcEEEEEEeC--eEEEEEEe
Q 019957          299 YLTEEEIEDLCTSCGLTNYTSKVQQ--SFIMFAAQ  331 (333)
Q Consensus       299 ~~t~~~l~~ll~~aGf~~v~~~~~~--~~~~~~a~  331 (333)
                      +++.+++.++++++||+.++.....  ...+++++
T Consensus       226 f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~  260 (261)
T PLN02233        226 YLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT  260 (261)
T ss_pred             cCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence            7899999999999999988754422  22555554

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.91  E-value=8.7e-24  Score=189.54  Aligned_cols=178  Identities=22%  Similarity=0.418  Sum_probs=124.7

Q ss_pred             eecccCCCccccccCCCCccccccccCceeeCCCCccccCcCCceeeecccCCCCcCCCCccccccccCcchhHHHHhhH
Q 019957           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGW  139 (333)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~  139 (333)
                      +|+||+|+++|....           ..++|.++++.+..++||+++++.........-  ...+++..           
T Consensus         2 ~~~CP~C~~~l~~~~-----------~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~--d~~~~~~a-----------   57 (272)
T PRK11088          2 SYQCPLCHQPLTLEE-----------NSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPG--DNKEMMQA-----------   57 (272)
T ss_pred             cccCCCCCcchhcCC-----------CEEEcCCCCCCccccCceEEeccccccCCCCCC--cCHHHHHH-----------
Confidence            589999999995532           479999966555899999999974222111100  00111111           


Q ss_pred             HhhcccCCCCCc--HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCC---CeEEEEeCCHHHHHHHHHHHHhcC
Q 019957          140 RQNFNRSGFPGP--DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY---SGVVALDFSENMLRQCYDFIKQDN  214 (333)
Q Consensus       140 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~---~~v~g~D~s~~~~~~a~~~~~~~~  214 (333)
                      |+.|...+++.+  +...+.+.+.+. ....+|||+|||+|.++..+.+..+.   .+++|+|+|+.+++.|+++     
T Consensus        58 r~~fl~~g~y~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----  131 (272)
T PRK11088         58 RRAFLDAGHYQPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----  131 (272)
T ss_pred             HHHHHHCCChHHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----
Confidence            233333333221  222233444433 34568999999999999999877542   3789999999999999875     


Q ss_pred             cCCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          215 TILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       215 ~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                         .+++.+..+|+.++|+++++||+|++...-       ..++++.|+|||||.|++.++..
T Consensus       132 ---~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~-------~~~~e~~rvLkpgG~li~~~p~~  184 (272)
T PRK11088        132 ---YPQVTFCVASSHRLPFADQSLDAIIRIYAP-------CKAEELARVVKPGGIVITVTPGP  184 (272)
T ss_pred             ---CCCCeEEEeecccCCCcCCceeEEEEecCC-------CCHHHHHhhccCCCEEEEEeCCC
Confidence               457889999999999999999999986541       23689999999999999988765

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.91  E-value=5.6e-23  Score=173.90  Aligned_cols=176  Identities=20%  Similarity=0.272  Sum_probs=144.6

Q ss_pred             CcchhHHHHhhHHhhcccCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCC------CeEEEEeCCHH
Q 019957          128 SPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY------SGVVALDFSEN  201 (333)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~------~~v~g~D~s~~  201 (333)
                      |+.++...++.|+..               ....+.+..+.++||++||||..+..+.+.-..      .+|+++|+|+.
T Consensus        77 ND~mSlGiHRlWKd~---------------~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~  141 (296)
T KOG1540|consen   77 NDAMSLGIHRLWKDM---------------FVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPH  141 (296)
T ss_pred             HHHhhcchhHHHHHH---------------hhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHH
Confidence            788999999999754               444677778899999999999999988887543      78999999999


Q ss_pred             HHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccC-C
Q 019957          202 MLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT-S  280 (333)
Q Consensus       202 ~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~-~  280 (333)
                      |+..++++..+.++.....+.++.+|++++||++.+||..++.+.|..++++.+.|+|++|+|||||+|.+.++.... .
T Consensus       142 mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~  221 (296)
T KOG1540|consen  142 MLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENE  221 (296)
T ss_pred             HHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccH
Confidence            999999998777763344599999999999999999999999999999999999999999999999999998877642 1


Q ss_pred             ------------CcchhhHHHHHhhh-------ccCCCCCHHHHHHHHHhCCCcEEE
Q 019957          281 ------------STSLTGRVLRERIL-------QNYNYLTEEEIEDLCTSCGLTNYT  318 (333)
Q Consensus       281 ------------~~~~~~~~~~~~~~-------~~~~~~t~~~l~~ll~~aGf~~v~  318 (333)
                                  ..+.++.++.....       ....+.+.+++..+.+++||..+.
T Consensus       222 ~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~  278 (296)
T KOG1540|consen  222 PLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN  278 (296)
T ss_pred             HHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence                        12222322222111       445678899999999999999886

>PLN02244 tocopherol O-methyltransferase

Probab=99.89  E-value=1.5e-21  Score=180.03  Aligned_cols=153  Identities=20%  Similarity=0.255  Sum_probs=123.5

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.++++....++  ..++.++.+|+.++|+++++||+|++.
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~--~~~v~~~~~D~~~~~~~~~~FD~V~s~  193 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGL--SDKVSFQVADALNQPFEDGQFDLVWSM  193 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEcCcccCCCCCCCccEEEEC
Confidence            567899999999999999999875 45999999999999999998887764  567999999999999999999999999


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEEEEEecccCC------CcchhhHHHHHhh---hccCCCCCHHHHHHHHHhCCCc
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTS------STSLTGRVLRERI---LQNYNYLTEEEIEDLCTSCGLT  315 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~t~~~l~~ll~~aGf~  315 (333)
                      .+++|++|+..+++++.++|||||.|++.++.....      ..+. ........   .....+.+.+++..+++++||+
T Consensus       194 ~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~-~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~  272 (340)
T PLN02244        194 ESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPD-EQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQ  272 (340)
T ss_pred             CchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHH-HHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCC
Confidence            999999999999999999999999999988654211      0111 11111111   1122346899999999999999


Q ss_pred             EEEEEE
Q 019957          316 NYTSKV  321 (333)
Q Consensus       316 ~v~~~~  321 (333)
                      +++...
T Consensus       273 ~v~~~d  278 (340)
T PLN02244        273 DIKTED  278 (340)
T ss_pred             eeEeee
Confidence            988643

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.89  E-value=2.2e-21  Score=170.01  Aligned_cols=174  Identities=25%  Similarity=0.344  Sum_probs=135.3

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (333)
                      +.+...+...++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.+++++...+   ..++.++.+|+..++++
T Consensus        35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~  111 (231)
T TIGR02752        35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG---LHNVELVHGNAMELPFD  111 (231)
T ss_pred             HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC---CCceEEEEechhcCCCC
Confidence            34555666667889999999999999999887 456799999999999999999887655   46899999999988888


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCC-------------cchhhHHHH-------Hhhh
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSS-------------TSLTGRVLR-------ERIL  294 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-------------~~~~~~~~~-------~~~~  294 (333)
                      +++||+|++..+++|++++.++++++.++|+|||.+++.+.......             .+.+...+.       ....
T Consensus       112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  191 (231)
T TIGR02752       112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQE  191 (231)
T ss_pred             CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHH
Confidence            88999999999999999999999999999999999998876543110             011000000       0011


Q ss_pred             ccCCCCCHHHHHHHHHhCCCcEEEEEE--eCeEEEEEEeC
Q 019957          295 QNYNYLTEEEIEDLCTSCGLTNYTSKV--QQSFIMFAAQK  332 (333)
Q Consensus       295 ~~~~~~t~~~l~~ll~~aGf~~v~~~~--~~~~~~~~a~k  332 (333)
                      ....+++.+++.++++++||++++...  .+....+++.|
T Consensus       192 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~  231 (231)
T TIGR02752       192 STRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK  231 (231)
T ss_pred             HHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence            345678999999999999999877543  34557777766

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.88  E-value=3.2e-22  Score=181.64  Aligned_cols=151  Identities=19%  Similarity=0.266  Sum_probs=120.7

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.|+++....+.  ..++.++++|++++++.+++||+|++.
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~~~~~~~--~~~i~~~~~dae~l~~~~~~FD~Vi~~  205 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLHADMDPV--TSTIEYLCTTAEKLADEGRKFDAVLSL  205 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCc--ccceeEEecCHHHhhhccCCCCEEEEh
Confidence            3567999999999999999988654  999999999999999987665432  357999999999998878899999999


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEEEEEecccCCC--cchhhHHHHHh-hh--cc--CCCCCHHHHHHHHHhCCCcEE
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSS--TSLTGRVLRER-IL--QN--YNYLTEEEIEDLCTSCGLTNY  317 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~--~~~~~~~~~~~-~~--~~--~~~~t~~~l~~ll~~aGf~~v  317 (333)
                      ++|||+.|+..+++++.++|||||.+++.+++.....  .......+... .+  .|  ..+++++++..+++++||+++
T Consensus       206 ~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~  285 (322)
T PLN02396        206 EVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVK  285 (322)
T ss_pred             hHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEE
Confidence            9999999999999999999999999999998764110  00001111111 11  12  347899999999999999988


Q ss_pred             EE
Q 019957          318 TS  319 (333)
Q Consensus       318 ~~  319 (333)
                      +.
T Consensus       286 ~~  287 (322)
T PLN02396        286 EM  287 (322)
T ss_pred             EE
Confidence            75

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.87  E-value=9.4e-21  Score=168.75  Aligned_cols=165  Identities=15%  Similarity=0.186  Sum_probs=130.4

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC
Q 019957          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (333)
                      ++..+....+...+...++.+|||||||+|..+..+++.. ..+|+|+|+|+.+++.++++...     ..++.++.+|+
T Consensus        35 ~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~  108 (263)
T PTZ00098         35 SGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDI  108 (263)
T ss_pred             CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCc
Confidence            4444556667777777788899999999999998887764 45999999999999999987654     34799999999


Q ss_pred             CCCCCCCCCcceEEeccccccCC--ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHh-hhccCCCCCHHHH
Q 019957          229 CRLPFASGFVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER-ILQNYNYLTEEEI  305 (333)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~t~~~l  305 (333)
                      ...|+++++||+|++..+++|++  ++..+++++.++|||||.|++.++..... ..+ ...+... ......+.+.+++
T Consensus       109 ~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~  186 (263)
T PTZ00098        109 LKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKI-ENW-DEEFKAYIKKRKYTLIPIQEY  186 (263)
T ss_pred             ccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccc-cCc-HHHHHHHHHhcCCCCCCHHHH
Confidence            98888889999999999999986  78899999999999999999998765321 112 1111111 1123456799999


Q ss_pred             HHHHHhCCCcEEEEEE
Q 019957          306 EDLCTSCGLTNYTSKV  321 (333)
Q Consensus       306 ~~ll~~aGf~~v~~~~  321 (333)
                      ..+++++||++++...
T Consensus       187 ~~~l~~aGF~~v~~~d  202 (263)
T PTZ00098        187 GDLIKSCNFQNVVAKD  202 (263)
T ss_pred             HHHHHHCCCCeeeEEe
Confidence            9999999999988544

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.87  E-value=8.5e-21  Score=173.36  Aligned_cols=161  Identities=19%  Similarity=0.214  Sum_probs=122.8

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      +.+...+.+..+.+|||||||+|.++..+++.++ ..|+|+|+|+.++..++......+.  ..++.++.+|++++|+ +
T Consensus       112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~~--~~~i~~~~~d~e~lp~-~  187 (322)
T PRK15068        112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLGN--DQRAHLLPLGIEQLPA-L  187 (322)
T ss_pred             HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcCC--CCCeEEEeCCHHHCCC-c
Confidence            5566677666788999999999999999999874 3699999999988765543222211  3479999999999998 7


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcc-hhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTS-LTGRVLRERILQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      ++||+|++..+++|..++..+|++++++|+|||.+++.+......... .............+...+.+++..+|+++||
T Consensus       188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF  267 (322)
T PRK15068        188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGF  267 (322)
T ss_pred             CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCC
Confidence            899999999999999999999999999999999999987654322111 1111111112223345689999999999999


Q ss_pred             cEEEEE
Q 019957          315 TNYTSK  320 (333)
Q Consensus       315 ~~v~~~  320 (333)
                      ++++..
T Consensus       268 ~~i~~~  273 (322)
T PRK15068        268 KDVRIV  273 (322)
T ss_pred             ceEEEE
Confidence            998864

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.87  E-value=9.8e-22  Score=162.16  Aligned_cols=148  Identities=24%  Similarity=0.406  Sum_probs=113.0

Q ss_pred             HHHHHhhc-ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957          156 KMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (333)
Q Consensus       156 ~~~~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (333)
                      +.+..+.. ..++.+|||||||+|.++..+++.+.  +++|+|+++.+++.  .           .......+....+..
T Consensus        11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~--~-----------~~~~~~~~~~~~~~~   75 (161)
T PF13489_consen   11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK--R-----------NVVFDNFDAQDPPFP   75 (161)
T ss_dssp             HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH--T-----------TSEEEEEECHTHHCH
T ss_pred             HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh--h-----------hhhhhhhhhhhhhcc
Confidence            34444443 35678999999999999999988876  99999999999877  1           223333333444456


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhh-hccCCCCCHHHHHHHHHhCC
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI-LQNYNYLTEEEIEDLCTSCG  313 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~~l~~ll~~aG  313 (333)
                      +++||+|+++.+|+|++|+..+|+++.++|||||++++.++.........+..+..... ..|..+++.++++.+++++|
T Consensus        76 ~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G  155 (161)
T PF13489_consen   76 DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAG  155 (161)
T ss_dssp             SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTT
T ss_pred             ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCC
Confidence            78999999999999999999999999999999999999999864211111111111111 16788999999999999999


Q ss_pred             CcEEE
Q 019957          314 LTNYT  318 (333)
Q Consensus       314 f~~v~  318 (333)
                      |++++
T Consensus       156 ~~iv~  160 (161)
T PF13489_consen  156 FEIVE  160 (161)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            99986

...

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.86  E-value=1.3e-20  Score=167.45  Aligned_cols=163  Identities=15%  Similarity=0.182  Sum_probs=125.2

Q ss_pred             HHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-CCCC
Q 019957          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASG  236 (333)
Q Consensus       158 ~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~  236 (333)
                      +.+.+. .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++....++  ..++.++++|+.+++ +.++
T Consensus        37 ~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~g~--~~~v~~~~~d~~~l~~~~~~  111 (255)
T PRK11036         37 LLAELP-PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAKGV--SDNMQFIHCAAQDIAQHLET  111 (255)
T ss_pred             HHHhcC-CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC--ccceEEEEcCHHHHhhhcCC
Confidence            334443 3467999999999999999999865  999999999999999999888764  567899999997764 5578


Q ss_pred             CcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcc-hhhHHHH---Hh-------hhccCCCCCHHHH
Q 019957          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTS-LTGRVLR---ER-------ILQNYNYLTEEEI  305 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~~~~~~---~~-------~~~~~~~~t~~~l  305 (333)
                      +||+|++..+++|+.+|..+++++.++|||||++++..++....... .+...+.   ..       .....+.++++++
T Consensus       112 ~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l  191 (255)
T PRK11036        112 PVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQV  191 (255)
T ss_pred             CCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHH
Confidence            99999999999999999999999999999999999988765321000 0000000   00       0112346889999


Q ss_pred             HHHHHhCCCcEEEEEEeCeE
Q 019957          306 EDLCTSCGLTNYTSKVQQSF  325 (333)
Q Consensus       306 ~~ll~~aGf~~v~~~~~~~~  325 (333)
                      .++++++||+++....-..|
T Consensus       192 ~~~l~~aGf~~~~~~gi~~~  211 (255)
T PRK11036        192 YQWLEEAGWQIMGKTGVRVF  211 (255)
T ss_pred             HHHHHHCCCeEeeeeeEEEE
Confidence            99999999999875444444

>TIGR00452 methyltransferase, putative

Probab=99.86  E-value=1.5e-20  Score=170.07  Aligned_cols=162  Identities=17%  Similarity=0.176  Sum_probs=121.2

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      ..+...+...++.+|||||||+|.++..++..++ ..|+|+|+|+.++..++......+.  ..++.+..+++++++.. 
T Consensus       111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~--~~~v~~~~~~ie~lp~~-  186 (314)
T TIGR00452       111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDN--DKRAILEPLGIEQLHEL-  186 (314)
T ss_pred             HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhcc--CCCeEEEECCHHHCCCC-
Confidence            4566666667788999999999999999888874 3799999999998765432221110  35788888999888754 


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcc-hhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTS-LTGRVLRERILQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      .+||+|++.++++|+++|..+|++++++|||||.|++.+......... .............+..++.+++..+++++||
T Consensus       187 ~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF  266 (314)
T TIGR00452       187 YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGF  266 (314)
T ss_pred             CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCC
Confidence            489999999999999999999999999999999999987654322111 1111111122233456799999999999999


Q ss_pred             cEEEEEE
Q 019957          315 TNYTSKV  321 (333)
Q Consensus       315 ~~v~~~~  321 (333)
                      +.+++..
T Consensus       267 ~~V~i~~  273 (314)
T TIGR00452       267 ENFRILD  273 (314)
T ss_pred             eEEEEEe
Confidence            9998543

Known examples to date are restricted to the proteobacteria.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.86  E-value=6.4e-22  Score=167.71  Aligned_cols=149  Identities=21%  Similarity=0.321  Sum_probs=121.1

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++.+|||||||.|.++..+++.|.  +|+|+|+++.+++.|+.+..+.++    .+++.+..++++....++||+|+|.
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~gv----~i~y~~~~~edl~~~~~~FDvV~cm  131 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALESGV----NIDYRQATVEDLASAGGQFDVVTCM  131 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhccc----cccchhhhHHHHHhcCCCccEEEEh
Confidence            4688999999999999999999985  999999999999999998887654    5778888888887666899999999


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCc--chhhHH-HHHhhh----ccCCCCCHHHHHHHHHhCCCcEE
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST--SLTGRV-LRERIL----QNYNYLTEEEIEDLCTSCGLTNY  317 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--~~~~~~-~~~~~~----~~~~~~t~~~l~~ll~~aGf~~v  317 (333)
                      .||||++||..+++.+.+.+||||.++++|+++.....  ..+... +....+    ....+.-++|+..++...|+.+.
T Consensus       132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~  211 (243)
T COG2227         132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKII  211 (243)
T ss_pred             hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEE
Confidence            99999999999999999999999999999999762111  111111 111112    33457788999999999999876


Q ss_pred             EE
Q 019957          318 TS  319 (333)
Q Consensus       318 ~~  319 (333)
                      ..
T Consensus       212 ~~  213 (243)
T COG2227         212 DR  213 (243)
T ss_pred             ee
Confidence            63

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.85  E-value=2.2e-19  Score=161.17  Aligned_cols=156  Identities=19%  Similarity=0.238  Sum_probs=122.6

Q ss_pred             cccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceE
Q 019957          163 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (333)
                      ...++.+|||+|||+|..+..+++. ++..+++|+|+++.+++.|+++....+   ..++.++.+|++.+++.+++||+|
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g---~~~v~~~~~d~~~l~~~~~~fD~V  150 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG---YTNVEFRLGEIEALPVADNSVDVI  150 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC---CCCEEEEEcchhhCCCCCCceeEE
Confidence            3456889999999999988776665 555689999999999999999887766   458899999999999888899999


Q ss_pred             EeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~  321 (333)
                      ++..+++|+++...+++++.++|||||+|++.+.........................++.+++.++++++||..++...
T Consensus       151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~  230 (272)
T PRK11873        151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQP  230 (272)
T ss_pred             EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEe
Confidence            99999999999999999999999999999998876533221111111111111223457889999999999999877533

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.84  E-value=1.9e-19  Score=164.13  Aligned_cols=145  Identities=22%  Similarity=0.309  Sum_probs=117.2

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++.+|||||||+|.++..+++..+..+++++|+|+.+++.++++..      ..++.++.+|++++++++++||+|++.
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~------~~~i~~i~gD~e~lp~~~~sFDvVIs~  185 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIIEGDAEDLPFPTDYADRYVSA  185 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh------ccCCeEEeccHHhCCCCCCceeEEEEc
Confidence            35679999999999999988887655699999999999999998643      236789999999999888999999999


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~  321 (333)
                      .+++|++++..+++++.++|||||.+++..+....   .+..+.+..   ....+.+.+++.++++++||+.++...
T Consensus       186 ~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~---~~~~r~~~~---~~~~~~t~eEl~~lL~~aGF~~V~i~~  256 (340)
T PLN02490        186 GSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPT---FWLSRFFAD---VWMLFPKEEEYIEWFTKAGFKDVKLKR  256 (340)
T ss_pred             ChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcc---hhHHHHhhh---hhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence            99999999999999999999999999887654321   111111111   112356899999999999999988644

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.84  E-value=5.7e-20  Score=163.41  Aligned_cols=152  Identities=18%  Similarity=0.146  Sum_probs=116.8

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      ..+.+.+...++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.+++          .++.++.+|+++++ .+
T Consensus        19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~----------~~~~~~~~d~~~~~-~~   87 (255)
T PRK14103         19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE----------RGVDARTGDVRDWK-PK   87 (255)
T ss_pred             HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh----------cCCcEEEcChhhCC-CC
Confidence            34455566667789999999999999999998777799999999999999975          25789999998775 46


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCC-Ccchhh-----HHHHHhhh-----ccCCCCCHHH
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTS-STSLTG-----RVLRERIL-----QNYNYLTEEE  304 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~-~~~~~~-----~~~~~~~~-----~~~~~~t~~~  304 (333)
                      ++||+|+++.++||++++..++++++++|||||.+++..+..... ......     ..|.....     ....+.+.++
T Consensus        88 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  167 (255)
T PRK14103         88 PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAG  167 (255)
T ss_pred             CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHH
Confidence            799999999999999999999999999999999999986543111 111100     01111111     1234578999


Q ss_pred             HHHHHHhCCCcEEE
Q 019957          305 IEDLCTSCGLTNYT  318 (333)
Q Consensus       305 l~~ll~~aGf~~v~  318 (333)
                      +.++|+++||++..
T Consensus       168 ~~~~l~~aGf~v~~  181 (255)
T PRK14103        168 YAELLTDAGCKVDA  181 (255)
T ss_pred             HHHHHHhCCCeEEE
Confidence            99999999998544

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.84  E-value=4.2e-19  Score=156.09  Aligned_cols=176  Identities=23%  Similarity=0.343  Sum_probs=135.9

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (333)
                      ..+...+...++.+|||+|||+|.++..++..++ ..+++++|+++.+++.+++++...+.  ..++.++.+|+...++.
T Consensus        41 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~~~  118 (239)
T PRK00216         41 RKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL--SGNVEFVQGDAEALPFP  118 (239)
T ss_pred             HHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc--ccCeEEEecccccCCCC
Confidence            3344445555678999999999999999998875 57999999999999999998766543  45789999999888877


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCc-chhhHHHH------------H-------hhh
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGRVLR------------E-------RIL  294 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~------------~-------~~~  294 (333)
                      .++||+|++..+++|+.++..+++++.++|+|||.+++.+........ ......+.            .       ...
T Consensus       119 ~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (239)
T PRK00216        119 DNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAE  198 (239)
T ss_pred             CCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHH
Confidence            789999999999999999999999999999999999998765532210 00000000            0       001


Q ss_pred             ccCCCCCHHHHHHHHHhCCCcEEEEEE--eCeEEEEEEeCC
Q 019957          295 QNYNYLTEEEIEDLCTSCGLTNYTSKV--QQSFIMFAAQKP  333 (333)
Q Consensus       295 ~~~~~~t~~~l~~ll~~aGf~~v~~~~--~~~~~~~~a~kp  333 (333)
                      ....+++.+++.++++++||++++...  .+.+.++.+.||
T Consensus       199 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~  239 (239)
T PRK00216        199 SIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP  239 (239)
T ss_pred             HHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence            113467899999999999999888654  366689999987

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.84  E-value=2.6e-20  Score=164.66  Aligned_cols=182  Identities=15%  Similarity=0.182  Sum_probs=130.3

Q ss_pred             CCCcHHHHHHHHHhhc--ccCCCeEEEEcCCcCHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEE
Q 019957          148 FPGPDEEFKMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL  223 (333)
Q Consensus       148 ~~~~~~~~~~~~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~  223 (333)
                      .|..+.....+...+.  ..++.+|||||||+|..+..+++.  .+..+++|+|+|+.|++.|++++...+.  ..++.+
T Consensus        36 ~p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~--~~~v~~  113 (247)
T PRK15451         36 VPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA--PTPVDV  113 (247)
T ss_pred             CCChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCeEE
Confidence            3445555544443332  235679999999999999888873  4667999999999999999999887653  457999


Q ss_pred             EEccCCCCCCCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccC--CCcchhhHHHHH--------
Q 019957          224 VRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYT--SSTSLTGRVLRE--------  291 (333)
Q Consensus       224 ~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~--~~~~~~~~~~~~--------  291 (333)
                      +++|+.++++.  .+|+|+++.++||+++.  ..++++++++|||||.|++.+.....  ...+++...+..        
T Consensus       114 ~~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s  191 (247)
T PRK15451        114 IEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYS  191 (247)
T ss_pred             EeCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCC
Confidence            99999988764  59999999999999754  57899999999999999998855321  111211111110        


Q ss_pred             ---------hhhccCCCCCHHHHHHHHHhCCCcEEEEE-EeCeEEEEEEeCC
Q 019957          292 ---------RILQNYNYLTEEEIEDLCTSCGLTNYTSK-VQQSFIMFAAQKP  333 (333)
Q Consensus       292 ---------~~~~~~~~~t~~~l~~ll~~aGf~~v~~~-~~~~~~~~~a~kp  333 (333)
                               .........++++..++|+++||+.+... ....|..+.|+||
T Consensus       192 ~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k~  243 (247)
T PRK15451        192 ELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALKA  243 (247)
T ss_pred             HHHHHHHHHHHHhhcccCCHHHHHHHHHHcCchhHHHHHHHHhHHHHhheec
Confidence                     01123445789999999999999887653 2334455555553

>PRK05785 hypothetical protein; Provisional

Probab=99.84  E-value=1.4e-19  Score=157.62  Aligned_cols=152  Identities=20%  Similarity=0.141  Sum_probs=111.4

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccc
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (333)
                      +.+|||||||||.++..+.+.+ ..+|+|+|+|++|++.|+++           ..++++|++.+|+++++||+|++..+
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~-----------~~~~~~d~~~lp~~d~sfD~v~~~~~  119 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA-----------DDKVVGSFEALPFRDKSFDVVMSSFA  119 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc-----------cceEEechhhCCCCCCCEEEEEecCh
Confidence            6799999999999999999885 34999999999999999863           23578999999999999999999999


Q ss_pred             cccCCChHHHHHHHHHhccCCcEEEEEEeccc-CCCcchhhHHHHH-------------------hhhccCCCCCHHHHH
Q 019957          247 LHCWPSPSNAVAEISRILRSGGVFVGTTFLRY-TSSTSLTGRVLRE-------------------RILQNYNYLTEEEIE  306 (333)
Q Consensus       247 l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~-~~~~~~~~~~~~~-------------------~~~~~~~~~t~~~l~  306 (333)
                      ++|++|+.+++++++|+|||.+  ++.+...+ ......+...+..                   -......+.+.+++.
T Consensus       120 l~~~~d~~~~l~e~~RvLkp~~--~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~  197 (226)
T PRK05785        120 LHASDNIEKVIAEFTRVSRKQV--GFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHR  197 (226)
T ss_pred             hhccCCHHHHHHHHHHHhcCce--EEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHH
Confidence            9999999999999999999942  22222221 1111111111110                   011334577889999


Q ss_pred             HHHHhC-CCcEEEEEEeCeEEEEEEeC
Q 019957          307 DLCTSC-GLTNYTSKVQQSFIMFAAQK  332 (333)
Q Consensus       307 ~ll~~a-Gf~~v~~~~~~~~~~~~a~k  332 (333)
                      ++++++ ++...+....+.-.+++++|
T Consensus       198 ~~~~~~~~~~~~~~~~~G~~~~~~~~k  224 (226)
T PRK05785        198 EIFEKYADIKVYEERGLGLVYFVVGSS  224 (226)
T ss_pred             HHHHHHhCceEEEEccccEEEEEEEee
Confidence            999996 34334444566667888876

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.84  E-value=6e-20  Score=161.14  Aligned_cols=172  Identities=17%  Similarity=0.240  Sum_probs=129.4

Q ss_pred             HHhhHHhhcccCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 019957          135 YERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN  214 (333)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~  214 (333)
                      .+..|+..+.+          +++...+.+..+.+|||||||+|+++..+...++ ..|+|+|++.....+.+-...-.|
T Consensus        94 IDtEWrSd~KW----------~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg  162 (315)
T PF08003_consen   94 IDTEWRSDWKW----------DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLG  162 (315)
T ss_pred             ecccccccchH----------HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhC
Confidence            45566665554          7788888778899999999999999999999984 579999999876655433222222


Q ss_pred             cCCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCc-chhhHHHHHhh
Q 019957          215 TILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGRVLRERI  293 (333)
Q Consensus       215 ~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~  293 (333)
                      .  ...+.++...++++|. .+.||+|+|.+||.|..+|...|++++..|++||.+++.|........ .++-..-....
T Consensus       163 ~--~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m  239 (315)
T PF08003_consen  163 Q--DPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKM  239 (315)
T ss_pred             C--CccEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCC
Confidence            1  2234444457788887 789999999999999999999999999999999999999877543222 11111122234


Q ss_pred             hccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957          294 LQNYNYLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       294 ~~~~~~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                      ...+...|...+..+++++||+.+++.
T Consensus       240 ~nv~FiPs~~~L~~wl~r~gF~~v~~v  266 (315)
T PF08003_consen  240 RNVWFIPSVAALKNWLERAGFKDVRCV  266 (315)
T ss_pred             CceEEeCCHHHHHHHHHHcCCceEEEe
Confidence            455666799999999999999998864

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.83  E-value=5.9e-20  Score=150.49  Aligned_cols=143  Identities=20%  Similarity=0.394  Sum_probs=111.5

Q ss_pred             CCCeEEEEcCCcCHHHHHHH-HhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--CCCCCcceEE
Q 019957          166 QGGLLVDVSCGSGLFSRKFA-KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVH  242 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~-~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~  242 (333)
                      .+.+|||+|||+|.++..++ ..++..+++|+|+|+.+++.|+++++..+   ..++.++++|+.+++  +. ++||+|+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~---~~ni~~~~~d~~~l~~~~~-~~~D~I~   78 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG---LDNIEFIQGDIEDLPQELE-EKFDIII   78 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT---STTEEEEESBTTCGCGCSS-TTEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc---ccccceEEeehhccccccC-CCeeEEE
Confidence            46799999999999999999 45667899999999999999999998877   458999999999977  54 7999999


Q ss_pred             eccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHH--Hhhhc-cC-CCCCHHHHHHHHHhCC
Q 019957          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR--ERILQ-NY-NYLTEEEIEDLCTSCG  313 (333)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~--~~~~~-~~-~~~t~~~l~~ll~~aG  313 (333)
                      +..+++|+.++..+++++.++|++||.+++.++.........+.....  ..... .. .. +.+++..+++++|
T Consensus        79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ag  152 (152)
T PF13847_consen   79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDELPEQLEELMNLYSEVWSMIYIGN-DKEEWKYILEEAG  152 (152)
T ss_dssp             EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHHHHHHHHHHHHHHCC----CCCGHHHHHHHTT
T ss_pred             EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECChHHHHHHHHHHHHHHHHHHhhhhhccc-CHHHHHHHHHhcC
Confidence            999999999999999999999999999999998721111111111111  00001 11 12 7889999999987

...

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.83  E-value=7.7e-19  Score=169.77  Aligned_cols=159  Identities=14%  Similarity=0.206  Sum_probs=126.5

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      ..+.+.+.+...++.+|||||||+|..+..+++.. +.+++|+|+|+.+++.|+++....    ..++.+..+|+...++
T Consensus       254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~----~~~v~~~~~d~~~~~~  328 (475)
T PLN02336        254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR----KCSVEFEVADCTKKTY  328 (475)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC----CCceEEEEcCcccCCC
Confidence            44556666665667899999999999999888865 559999999999999998876432    3478999999998888


Q ss_pred             CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCc-chhhHHHHHhhhccCCCCCHHHHHHHHHhC
Q 019957          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGRVLRERILQNYNYLTEEEIEDLCTSC  312 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~t~~~l~~ll~~a  312 (333)
                      ++++||+|++..+++|++++..++++++++|||||.+++.++....... ..+...+.   .......+.+++.++++++
T Consensus       329 ~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~l~~a  405 (475)
T PLN02336        329 PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIK---QRGYDLHDVQAYGQMLKDA  405 (475)
T ss_pred             CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHH---hcCCCCCCHHHHHHHHHHC
Confidence            8889999999999999999999999999999999999999876542111 11111111   1224578899999999999


Q ss_pred             CCcEEEEE
Q 019957          313 GLTNYTSK  320 (333)
Q Consensus       313 Gf~~v~~~  320 (333)
                      ||+++...
T Consensus       406 GF~~i~~~  413 (475)
T PLN02336        406 GFDDVIAE  413 (475)
T ss_pred             CCeeeeee
Confidence            99988653

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.83  E-value=4.1e-19  Score=157.58  Aligned_cols=150  Identities=23%  Similarity=0.302  Sum_probs=120.1

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (333)
Q Consensus       155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (333)
                      .+.+.+.+...++.+|||+|||+|.++..+.+.+.  +++++|+|+.+++.++++.        ....++.+|++.+|+.
T Consensus        31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~~D~s~~~l~~a~~~~--------~~~~~~~~d~~~~~~~  100 (251)
T PRK10258         31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS--QVTALDLSPPMLAQARQKD--------AADHYLAGDIESLPLA  100 (251)
T ss_pred             HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhC--------CCCCEEEcCcccCcCC
Confidence            34555666655677999999999999999987654  9999999999999998852        2356889999999988


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH--hhhccCCCCCHHHHHHHHHhC
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE--RILQNYNYLTEEEIEDLCTSC  312 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~t~~~l~~ll~~a  312 (333)
                      +++||+|+++.++++..|+..+|+++.++|||||.+++.++....  .+.+...+..  ..+....+++.+++..++...
T Consensus       101 ~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~--~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  178 (251)
T PRK10258        101 TATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGS--LPELHQAWQAVDERPHANRFLPPDAIEQALNGW  178 (251)
T ss_pred             CCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCc--hHHHHHHHHHhccCCccccCCCHHHHHHHHHhC
Confidence            889999999999999999999999999999999999999876531  1221222222  122345688999999999999


Q ss_pred             CCcE
Q 019957          313 GLTN  316 (333)
Q Consensus       313 Gf~~  316 (333)
                      |+..
T Consensus       179 ~~~~  182 (251)
T PRK10258        179 RYQH  182 (251)
T ss_pred             Ccee
Confidence            8864

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.82  E-value=8e-19  Score=154.09  Aligned_cols=161  Identities=16%  Similarity=0.150  Sum_probs=134.1

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (333)
Q Consensus       155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (333)
                      .+.+.+.+...+|.+|||||||.|.++..+++.+ +.+|+|+++|+++.+.+++++...|+  ..+++++..|..++.  
T Consensus        61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl--~~~v~v~l~d~rd~~--  135 (283)
T COG2230          61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGL--EDNVEVRLQDYRDFE--  135 (283)
T ss_pred             HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCC--CcccEEEeccccccc--
Confidence            4677788888999999999999999999999997 67999999999999999999999996  568999999988874  


Q ss_pred             CCCcceEEeccccccCCC--hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhC
Q 019957          235 SGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC  312 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~a  312 (333)
                       +.||.|++..++||+..  -..+++.++++|+|||++++.+.............++....-+.....+..++....+++
T Consensus       136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~  214 (283)
T COG2230         136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEA  214 (283)
T ss_pred             -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhc
Confidence             45999999999999976  789999999999999999999988764222122333333333555667889999999999


Q ss_pred             CCcEEEEEE
Q 019957          313 GLTNYTSKV  321 (333)
Q Consensus       313 Gf~~v~~~~  321 (333)
                      ||.+.....
T Consensus       215 ~~~v~~~~~  223 (283)
T COG2230         215 GFVVLDVES  223 (283)
T ss_pred             CcEEehHhh
Confidence            999887543

>TIGR00740 methyltransferase, putative

Probab=99.82  E-value=2e-19  Score=158.34  Aligned_cols=162  Identities=14%  Similarity=0.163  Sum_probs=121.6

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (333)
                      ++.+|||+|||+|.++..+++..  ++.+++|+|+|+.|++.|+++++..+.  ..++.++.+|+..++++  .+|+|++
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~--~~d~v~~  128 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS--EIPVEILCNDIRHVEIK--NASMVIL  128 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEEECChhhCCCC--CCCEEee
Confidence            56799999999999999998863  567999999999999999998876542  45789999999988865  5899999


Q ss_pred             ccccccCCC--hHHHHHHHHHhccCCcEEEEEEecccCC--CcchhhHHHH-----------------HhhhccCCCCCH
Q 019957          244 GAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTS--STSLTGRVLR-----------------ERILQNYNYLTE  302 (333)
Q Consensus       244 ~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~--~~~~~~~~~~-----------------~~~~~~~~~~t~  302 (333)
                      ..+++|+++  +..+++++.++|||||.+++.++.....  ..+.+...+.                 .........++.
T Consensus       129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~  208 (239)
T TIGR00740       129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSI  208 (239)
T ss_pred             ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCH
Confidence            999999964  4689999999999999999998754311  1111111110                 011134567899


Q ss_pred             HHHHHHHHhCCCcEEEEE-EeCeEEEEEEe
Q 019957          303 EEIEDLCTSCGLTNYTSK-VQQSFIMFAAQ  331 (333)
Q Consensus       303 ~~l~~ll~~aGf~~v~~~-~~~~~~~~~a~  331 (333)
                      +++..+++++||+.++.. ....|..++++
T Consensus       209 ~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~  238 (239)
T TIGR00740       209 ETHKARLKNVGFSHVELWFQCFNFGSLVAV  238 (239)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHhHhHHhee
Confidence            999999999999876642 23333444444

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK08317 hypothetical protein; Provisional

Probab=99.82  E-value=2.2e-18  Score=151.38  Aligned_cols=162  Identities=28%  Similarity=0.349  Sum_probs=125.1

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (333)
                      +.+.+.+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.++++....    ..++.+..+|+..+++.
T Consensus         9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~   84 (241)
T PRK08317          9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL----GPNVEFVRGDADGLPFP   84 (241)
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC----CCceEEEecccccCCCC
Confidence            455566666778899999999999999998875 5679999999999999998873321    46799999999988888


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccC-----CCcchhhHHHHHhhhccCCCCCHHHHHHHH
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT-----SSTSLTGRVLRERILQNYNYLTEEEIEDLC  309 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll  309 (333)
                      +++||+|++..+++|+.++..+++++.++|||||.+++.++....     ....................++..++..++
T Consensus        85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  164 (241)
T PRK08317         85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLF  164 (241)
T ss_pred             CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            889999999999999999999999999999999999998864221     111111111111111233455678899999


Q ss_pred             HhCCCcEEEEEE
Q 019957          310 TSCGLTNYTSKV  321 (333)
Q Consensus       310 ~~aGf~~v~~~~  321 (333)
                      +++||+++....
T Consensus       165 ~~aGf~~~~~~~  176 (241)
T PRK08317        165 REAGLTDIEVEP  176 (241)
T ss_pred             HHcCCCceeEEE
Confidence            999999876533

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.81  E-value=1.6e-19  Score=135.22  Aligned_cols=95  Identities=34%  Similarity=0.588  Sum_probs=84.0

Q ss_pred             EEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccccC
Q 019957          171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCW  250 (333)
Q Consensus       171 LDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~  250 (333)
                      ||+|||+|.++..+++. +..+++++|+++.+++.++++....      ++.+..+|++++|+++++||+|++..+++|+
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~------~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE------GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS------TEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc------CchheeehHHhCccccccccccccccceeec
Confidence            89999999999999999 4559999999999999999986543      4569999999999999999999999999999


Q ss_pred             CChHHHHHHHHHhccCCcEEEE
Q 019957          251 PSPSNAVAEISRILRSGGVFVG  272 (333)
Q Consensus       251 ~d~~~~l~~~~r~LkpgG~l~i  272 (333)
                      +++.++++++.|+|||||++++
T Consensus        74 ~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   74 EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCHHHHHHHHHHHcCcCeEEeC
Confidence            9999999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.81  E-value=1e-18  Score=149.22  Aligned_cols=146  Identities=20%  Similarity=0.202  Sum_probs=113.4

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCC
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (333)
                      .+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.++++....+   ..++.+..+|+..+++. +
T Consensus        21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~~~~-~   94 (197)
T PRK11207         21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAAEN---LDNLHTAVVDLNNLTFD-G   94 (197)
T ss_pred             HHHHhcccCCCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcC---CCcceEEecChhhCCcC-C
Confidence            344455555678999999999999999999865  99999999999999999888766   35688999999887764 5


Q ss_pred             CcceEEeccccccCC--ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957          237 FVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      +||+|++..+++|++  +...+++++.++|||||++++.+....... +.        .......++++++.++++  ||
T Consensus        95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~-~~--------~~~~~~~~~~~el~~~~~--~~  163 (197)
T PRK11207         95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADY-PC--------TVGFPFAFKEGELRRYYE--GW  163 (197)
T ss_pred             CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCC-CC--------CCCCCCccCHHHHHHHhC--CC
Confidence            799999999999876  456899999999999999766544322110 00        001224578999999997  89


Q ss_pred             cEEEE
Q 019957          315 TNYTS  319 (333)
Q Consensus       315 ~~v~~  319 (333)
                      +++..
T Consensus       164 ~~~~~  168 (197)
T PRK11207        164 EMVKY  168 (197)
T ss_pred             eEEEe
Confidence            88774

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.81  E-value=6.9e-19  Score=153.48  Aligned_cols=143  Identities=18%  Similarity=0.195  Sum_probs=118.3

Q ss_pred             eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccc
Q 019957          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH  248 (333)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~  248 (333)
                      +|||||||+|.++..+++.++..+++|+|+|+.+++.+++++...++  ..++.++..|+...+++ ++||+|++..+++
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl--~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~   78 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL--QGRIRIFYRDSAKDPFP-DTYDLVFGFEVIH   78 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC--CcceEEEecccccCCCC-CCCCEeehHHHHH
Confidence            79999999999999999887667999999999999999999888775  56889999999776654 5899999999999


Q ss_pred             cCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957          249 CWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       249 h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~  321 (333)
                      |+.++..+++++.++|||||.+++.++.... .... .     .........+.++|.++++++||++++...
T Consensus        79 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~-~-----~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~  144 (224)
T smart00828       79 HIKDKMDLFSNISRHLKDGGHLVLADFIANL-LSAI-E-----HEETTSYLVTREEWAELLARNNLRVVEGVD  144 (224)
T ss_pred             hCCCHHHHHHHHHHHcCCCCEEEEEEccccc-Cccc-c-----ccccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence            9999999999999999999999998875421 0000 0     001223367899999999999999988643

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.81  E-value=9e-19  Score=155.95  Aligned_cols=162  Identities=18%  Similarity=0.179  Sum_probs=117.0

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      .++.+.+.+...++.+|||||||.|.++..+++.+ +++|+|+.+|++..+.++++++..|+  ..++.+...|..+++.
T Consensus        50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl--~~~v~v~~~D~~~~~~  126 (273)
T PF02353_consen   50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGL--EDRVEVRLQDYRDLPG  126 (273)
T ss_dssp             HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTS--SSTEEEEES-GGG---
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEeeccccCC
Confidence            34667777788899999999999999999999995 56999999999999999999999986  6789999999988753


Q ss_pred             CCCCcceEEeccccccCC--ChHHHHHHHHHhccCCcEEEEEEecccCCCcchh----hHHHHHhhhccCCCCCHHHHHH
Q 019957          234 ASGFVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT----GRVLRERILQNYNYLTEEEIED  307 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~t~~~l~~  307 (333)
                         +||.|++..++||+.  +...+++++.++|||||++++.+...........    ..++....-+.....+..++..
T Consensus       127 ---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~  203 (273)
T PF02353_consen  127 ---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILR  203 (273)
T ss_dssp             ---S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHH
T ss_pred             ---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHH
Confidence               899999999999995  5579999999999999999998776542111110    0222222223445678899999


Q ss_pred             HHHhCCCcEEEEEE
Q 019957          308 LCTSCGLTNYTSKV  321 (333)
Q Consensus       308 ll~~aGf~~v~~~~  321 (333)
                      .+++.||++.....
T Consensus       204 ~~~~~~l~v~~~~~  217 (273)
T PF02353_consen  204 AAEDAGLEVEDVEN  217 (273)
T ss_dssp             HHHHTT-EEEEEEE
T ss_pred             HHhcCCEEEEEEEE
Confidence            99999999887543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.80  E-value=1.5e-19  Score=154.19  Aligned_cols=147  Identities=26%  Similarity=0.346  Sum_probs=113.7

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCC----CeEEEEccCCCCCCCCCCcceEE
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS----NLALVRADVCRLPFASGFVDAVH  242 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~----~i~~~~~d~~~lp~~~~~fD~V~  242 (333)
                      +.+|||+|||+|.++..|++.|.  +|+|+|+++.+++.|+++...... ...    ++.+...+++.+.   +.||+|+
T Consensus        90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h~~~dP~-~~~~~~y~l~~~~~~~E~~~---~~fDaVv  163 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEHKKMDPV-LEGAIAYRLEYEDTDVEGLT---GKFDAVV  163 (282)
T ss_pred             CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHhhhcCch-hccccceeeehhhcchhhcc---cccceee
Confidence            46799999999999999999986  999999999999999998544332 122    3667777777663   4699999


Q ss_pred             eccccccCCChHHHHHHHHHhccCCcEEEEEEecccC--CCcchhhHHHHHhh-h----ccCCCCCHHHHHHHHHhCCCc
Q 019957          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT--SSTSLTGRVLRERI-L----QNYNYLTEEEIEDLCTSCGLT  315 (333)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~--~~~~~~~~~~~~~~-~----~~~~~~t~~~l~~ll~~aGf~  315 (333)
                      |+.|+||+.||..++..+.+.|||||.+++++.++.-  .....+...+..+. +    ....+.+++++..+++.+|++
T Consensus       164 csevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~  243 (282)
T KOG1270|consen  164 CSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQ  243 (282)
T ss_pred             eHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcc
Confidence            9999999999999999999999999999999998751  11111111111111 1    223578899999999999998


Q ss_pred             EEEE
Q 019957          316 NYTS  319 (333)
Q Consensus       316 ~v~~  319 (333)
                      +...
T Consensus       244 v~~v  247 (282)
T KOG1270|consen  244 VNDV  247 (282)
T ss_pred             hhhh
Confidence            7653

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.79  E-value=9.9e-18  Score=145.79  Aligned_cols=171  Identities=22%  Similarity=0.298  Sum_probs=128.6

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      .+...+...++.+|||+|||+|.++..+.+.++. .+++++|+++.+++.++++...     ..++.++.+|+.+.++..
T Consensus        30 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-----~~~i~~~~~d~~~~~~~~  104 (223)
T TIGR01934        30 RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-----PLNIEFIQADAEALPFED  104 (223)
T ss_pred             HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-----CCCceEEecchhcCCCCC
Confidence            3344444456789999999999999999988764 6899999999999999987651     457899999999888777


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCc-chhhHHHHH-------------------hhhc
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGRVLRE-------------------RILQ  295 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~-------------------~~~~  295 (333)
                      ++||+|++..+++|..++..+++++.++|+|||.+++.+........ ......+..                   ....
T Consensus       105 ~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (223)
T TIGR01934       105 NSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPES  184 (223)
T ss_pred             CcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHH
Confidence            89999999999999999999999999999999999998875432110 000000000                   0011


Q ss_pred             cCCCCCHHHHHHHHHhCCCcEEEEEE--eCeEEEEEEeC
Q 019957          296 NYNYLTEEEIEDLCTSCGLTNYTSKV--QQSFIMFAAQK  332 (333)
Q Consensus       296 ~~~~~t~~~l~~ll~~aGf~~v~~~~--~~~~~~~~a~k  332 (333)
                      ...+++.++|..+++++||+++....  .+...+++++|
T Consensus       185 ~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~  223 (223)
T TIGR01934       185 IRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK  223 (223)
T ss_pred             HHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence            23467899999999999999876533  33335667665

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.78  E-value=1.6e-17  Score=145.94  Aligned_cols=139  Identities=27%  Similarity=0.415  Sum_probs=115.5

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (333)
                      .+.+|||+|||+|.++..+.+.++..+++++|+++.+++.++++..       +++.++.+|+.+.++.+++||+|++..
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD~vi~~~  106 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEKLPLEDSSFDLIVSNL  106 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhhCCCCCCceeEEEEhh
Confidence            3568999999999999999999887789999999999999887642       368899999999988888999999999


Q ss_pred             ccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhh-ccCCCCCHHHHHHHHHhCCCcEEE
Q 019957          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERIL-QNYNYLTEEEIEDLCTSCGLTNYT  318 (333)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~l~~ll~~aGf~~v~  318 (333)
                      +++|+.++..+++++.++|||||.+++.++....      ...+..... ....+++.+++.+++.++ |..+.
T Consensus       107 ~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~  173 (240)
T TIGR02072       107 ALQWCDDLSQALSELARVLKPGGLLAFSTFGPGT------LHELRQSFGQHGLRYLSLDELKALLKNS-FELLT  173 (240)
T ss_pred             hhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccC------HHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcE
Confidence            9999999999999999999999999998875531      111111111 345678999999999998 87665

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.77  E-value=6.7e-18  Score=150.44  Aligned_cols=152  Identities=15%  Similarity=0.183  Sum_probs=116.1

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      +.+...+...++.+|||||||+|.++..+++..+..+++|+|+|+.+++.++++        ..++.++.+|+..+. .+
T Consensus        21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~--------~~~~~~~~~d~~~~~-~~   91 (258)
T PRK01683         21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSR--------LPDCQFVEADIASWQ-PP   91 (258)
T ss_pred             HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh--------CCCCeEEECchhccC-CC
Confidence            445555566677899999999999999999887777999999999999999886        456889999998764 35


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhH------HHHHhhh----ccCCCCCHHHH
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR------VLRERIL----QNYNYLTEEEI  305 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~------~~~~~~~----~~~~~~t~~~l  305 (333)
                      ++||+|+++.+++|++|+..+++++.++|||||.+++..+............      .|.....    ....+.+.+++
T Consensus        92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  171 (258)
T PRK01683         92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAY  171 (258)
T ss_pred             CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHH
Confidence            6999999999999999999999999999999999999764432111100000      1111111    12345678899


Q ss_pred             HHHHHhCCCcE
Q 019957          306 EDLCTSCGLTN  316 (333)
Q Consensus       306 ~~ll~~aGf~~  316 (333)
                      ..++.++|+.+
T Consensus       172 ~~~l~~~g~~v  182 (258)
T PRK01683        172 YDALAPAACRV  182 (258)
T ss_pred             HHHHHhCCCce
Confidence            99999999875

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.77  E-value=2.5e-18  Score=133.17  Aligned_cols=106  Identities=26%  Similarity=0.414  Sum_probs=89.5

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC-CCCCCCCCCcceEEec
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVDAVHAG  244 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~V~~~  244 (333)
                      |+.+|||||||+|.++..+++..+..+++|+|+|+.+++.++++....+.  ..++.++++|+ ..... .+.||+|++.
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~~~~-~~~~D~v~~~   77 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL--SDRITFVQGDAEFDPDF-LEPFDLVICS   77 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT--TTTEEEEESCCHGGTTT-SSCEEEEEEC
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CCCeEEEECccccCccc-CCCCCEEEEC
Confidence            46799999999999999999966677999999999999999999955553  78999999999 33333 4579999999


Q ss_pred             c-ccccC---CChHHHHHHHHHhccCCcEEEEEE
Q 019957          245 A-ALHCW---PSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       245 ~-vl~h~---~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      . +++++   .+..++++++.+.|+|||++++.+
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            9 55544   345789999999999999999976

...

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.76  E-value=5.1e-17  Score=148.27  Aligned_cols=159  Identities=13%  Similarity=0.098  Sum_probs=122.6

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      +.+.+.+...+..+|||||||+|.++..+++++|..+++++|. +.+++.+++++...++  ..+++++.+|+.+.+++ 
T Consensus       139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl--~~rv~~~~~d~~~~~~~-  214 (306)
T TIGR02716       139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV--ADRMRGIAVDIYKESYP-  214 (306)
T ss_pred             HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc--cceEEEEecCccCCCCC-
Confidence            4455555556678999999999999999999998889999997 7899999999888775  56899999999766654 


Q ss_pred             CCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH----h-hhccCCCCCHHHHHHH
Q 019957          236 GFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE----R-ILQNYNYLTEEEIEDL  308 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~t~~~l~~l  308 (333)
                       .+|+|++.+++|++.+.  ..++++++++|||||++++.+........+.+......    . ......+.+.+++.++
T Consensus       215 -~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l  293 (306)
T TIGR02716       215 -EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEI  293 (306)
T ss_pred             -CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHH
Confidence             37999999999998765  47899999999999999999875543333321111111    0 0012234558999999


Q ss_pred             HHhCCCcEEEE
Q 019957          309 CTSCGLTNYTS  319 (333)
Q Consensus       309 l~~aGf~~v~~  319 (333)
                      |+++||+.++.
T Consensus       294 l~~aGf~~v~~  304 (306)
T TIGR02716       294 LESLGYKDVTM  304 (306)
T ss_pred             HHHcCCCeeEe
Confidence            99999998873

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.76  E-value=1.4e-17  Score=136.91  Aligned_cols=157  Identities=21%  Similarity=0.288  Sum_probs=120.3

Q ss_pred             HHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeE-EEEccCCCCC-CCC
Q 019957          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA-LVRADVCRLP-FAS  235 (333)
Q Consensus       158 ~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~-~~~~d~~~lp-~~~  235 (333)
                      +..++.......|||||||||.+-..+... |..+|+++|+++.|.+++.+.+.++.   ..++. |+.++.+++| +++
T Consensus        68 i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k---~~~~~~fvva~ge~l~~l~d  143 (252)
T KOG4300|consen   68 IYYFLGKSGKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKK---PLQVERFVVADGENLPQLAD  143 (252)
T ss_pred             hHHHhcccCccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhcc---CcceEEEEeechhcCccccc
Confidence            334555555567899999999887766533 45699999999999999999988874   55666 9999999998 889


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCC------CCCHHHHHHHH
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYN------YLTEEEIEDLC  309 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~t~~~l~~ll  309 (333)
                      +++|+|++..+|..+.||.+.|+++.|+|+|||++++.+....  ...++.+.+.......++      .+| .++.+.|
T Consensus       144 ~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~--~y~~~n~i~q~v~ep~~~~~~dGC~lt-rd~~e~L  220 (252)
T KOG4300|consen  144 GSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAG--EYGFWNRILQQVAEPLWHLESDGCVLT-RDTGELL  220 (252)
T ss_pred             CCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccc--cchHHHHHHHHHhchhhheeccceEEe-hhHHHHh
Confidence            9999999999999999999999999999999999999998764  112223333332222222      233 4556788


Q ss_pred             HhCCCcEEEEEE
Q 019957          310 TSCGLTNYTSKV  321 (333)
Q Consensus       310 ~~aGf~~v~~~~  321 (333)
                      +.+-|+..+...
T Consensus       221 eda~f~~~~~kr  232 (252)
T KOG4300|consen  221 EDAEFSIDSCKR  232 (252)
T ss_pred             hhcccccchhhc
Confidence            899998877544

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.76  E-value=8.2e-18  Score=138.85  Aligned_cols=149  Identities=19%  Similarity=0.309  Sum_probs=116.1

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CC-C
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-F  233 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-~  233 (333)
                      +.|.+++.+  +.+|||+|||.|.++..|.+.- +.+.+|+|++++.+..+.++          ++.++++|+++ ++ |
T Consensus         5 ~~I~~~I~p--gsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~f   71 (193)
T PF07021_consen    5 QIIAEWIEP--GSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLADF   71 (193)
T ss_pred             HHHHHHcCC--CCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhhC
Confidence            556666554  7899999999999999999863 67999999999998888763          67899999965 43 8


Q ss_pred             CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhh------------hccCCCCC
Q 019957          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI------------LQNYNYLT  301 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~t  301 (333)
                      ++++||.|+++.+|+++.+|..+|+|+.|+   |...+++.|+.......+ .-.+.++.            .++.+++|
T Consensus        72 ~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~-~l~~~GrmPvt~~lPy~WYdTPNih~~T  147 (193)
T PF07021_consen   72 PDQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRL-QLLLRGRMPVTKALPYEWYDTPNIHLCT  147 (193)
T ss_pred             CCCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHH-HHHhcCCCCCCCCCCCcccCCCCccccc
Confidence            899999999999999999999999998665   667888877753111111 00011111            16678999


Q ss_pred             HHHHHHHHHhCCCcEEEEEE
Q 019957          302 EEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       302 ~~~l~~ll~~aGf~~v~~~~  321 (333)
                      ..++++++++.|+++++...
T Consensus       148 i~DFe~lc~~~~i~I~~~~~  167 (193)
T PF07021_consen  148 IKDFEDLCRELGIRIEERVF  167 (193)
T ss_pred             HHHHHHHHHHCCCEEEEEEE
Confidence            99999999999999988643

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.75  E-value=1.6e-17  Score=144.39  Aligned_cols=158  Identities=18%  Similarity=0.275  Sum_probs=114.8

Q ss_pred             HHHHHhhc--ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          156 KMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       156 ~~~~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      +.+.+.+.  ..++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.|++++...+.  ..++.+..+|+..++ 
T Consensus        43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~~~~-  117 (219)
T TIGR02021        43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGRDV--AGNVEFEVNDLLSLC-  117 (219)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CCceEEEECChhhCC-
Confidence            44555555  34578999999999999999988754  999999999999999998876542  347999999998876 


Q ss_pred             CCCCcceEEeccccccCCC--hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH-hhhccCCCCCHHHHHHHHH
Q 019957          234 ASGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-RILQNYNYLTEEEIEDLCT  310 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~l~~ll~  310 (333)
                        ++||+|++..+++|++.  ...+++++.+++++++++.+...........++...+.. ....+..+++.+++.++++
T Consensus       118 --~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  195 (219)
T TIGR02021       118 --GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALG  195 (219)
T ss_pred             --CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHH
Confidence              68999999999999864  467899999998876655543211110000011111111 1123456789999999999


Q ss_pred             hCCCcEEEEE
Q 019957          311 SCGLTNYTSK  320 (333)
Q Consensus       311 ~aGf~~v~~~  320 (333)
                      ++||+++...
T Consensus       196 ~~Gf~v~~~~  205 (219)
T TIGR02021       196 ELGWKIVREG  205 (219)
T ss_pred             HcCceeeeee
Confidence            9999998753

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK06202 hypothetical protein; Provisional

Probab=99.75  E-value=3.9e-17  Score=143.20  Aligned_cols=148  Identities=18%  Similarity=0.207  Sum_probs=108.9

Q ss_pred             cccCCCeEEEEcCCcCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCc
Q 019957          163 KSAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV  238 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f  238 (333)
                      ...++.+|||+|||+|.++..+++.    ++..+++|+|+|+.+++.|+++...      .++.+...+...++..+++|
T Consensus        57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~~~~~~l~~~~~~f  130 (232)
T PRK06202         57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR------PGVTFRQAVSDELVAEGERF  130 (232)
T ss_pred             CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc------CCCeEEEEecccccccCCCc
Confidence            3345679999999999998887653    5556999999999999999886432      35667777777777777899


Q ss_pred             ceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhh---HHHH------H-hhhccCCCCCHHHHH
Q 019957          239 DAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG---RVLR------E-RILQNYNYLTEEEIE  306 (333)
Q Consensus       239 D~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~---~~~~------~-~~~~~~~~~t~~~l~  306 (333)
                      |+|+++.++||++++  ..+++++.++++  |.+++.+..........+.   ..+.      . ....+..+|+++++.
T Consensus       131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~  208 (232)
T PRK06202        131 DVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELA  208 (232)
T ss_pred             cEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHH
Confidence            999999999999986  479999999998  6667767655311000000   0000      0 112445789999999


Q ss_pred             HHHHhCCCcEEEE
Q 019957          307 DLCTSCGLTNYTS  319 (333)
Q Consensus       307 ~ll~~aGf~~v~~  319 (333)
                      +++++ ||++...
T Consensus       209 ~ll~~-Gf~~~~~  220 (232)
T PRK06202        209 ALAPQ-GWRVERQ  220 (232)
T ss_pred             HHhhC-CCeEEec
Confidence            99999 9998773

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.74  E-value=3.2e-16  Score=131.97  Aligned_cols=123  Identities=21%  Similarity=0.178  Sum_probs=104.7

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccc
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (333)
                      +.+|||+|||+|..+..++...+..+|+++|+++.+++.++++.+..+   ..++.++.+|+.+++. .++||+|++.. 
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~---l~~i~~~~~d~~~~~~-~~~fDlV~~~~-  120 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG---LKNVTVVHGRAEEFGQ-EEKFDVVTSRA-  120 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC---CCCEEEEeccHhhCCC-CCCccEEEEcc-
Confidence            789999999999999999887777899999999999999999998887   3459999999988876 67999999975 


Q ss_pred             cccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957          247 LHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       247 l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                         +.++..+++++.++|||||++++.....                       ...++..+.+..|+.+.++.
T Consensus       121 ---~~~~~~~l~~~~~~LkpGG~lv~~~~~~-----------------------~~~~l~~~~~~~~~~~~~~~  168 (187)
T PRK00107        121 ---VASLSDLVELCLPLLKPGGRFLALKGRD-----------------------PEEEIAELPKALGGKVEEVI  168 (187)
T ss_pred             ---ccCHHHHHHHHHHhcCCCeEEEEEeCCC-----------------------hHHHHHHHHHhcCceEeeeE
Confidence               4567889999999999999999876321                       23567888888899876653

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.74  E-value=9.8e-17  Score=144.94  Aligned_cols=137  Identities=16%  Similarity=0.161  Sum_probs=108.5

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.++++....+   . ++.+...|+...++ +++||+|++.
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~~~---l-~v~~~~~D~~~~~~-~~~fD~I~~~  191 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEKEN---L-NIRTGLYDINSASI-QEEYDFILST  191 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC---C-ceEEEEechhcccc-cCCccEEEEc
Confidence            3456999999999999999998865  99999999999999999887765   2 78888889877655 6789999999


Q ss_pred             cccccCC--ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957          245 AALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       245 ~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~  319 (333)
                      .+++|+.  +...+++++.++|+|||++++......... +        ........+++++++++++.  |++++.
T Consensus       192 ~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~-~--------~~~p~~~~~~~~el~~~~~~--~~i~~~  257 (287)
T PRK12335        192 VVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDY-P--------CPMPFSFTFKEGELKDYYQD--WEIVKY  257 (287)
T ss_pred             chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccC-C--------CCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence            9999986  446889999999999999777654332110 0        01123456899999999975  888764

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.74  E-value=9.5e-17  Score=136.80  Aligned_cols=145  Identities=15%  Similarity=0.152  Sum_probs=110.3

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCC
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (333)
                      .+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.++++....++    .+.+...|+...++. +
T Consensus        21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~~~~----~v~~~~~d~~~~~~~-~   93 (195)
T TIGR00477        21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKARENL----PLRTDAYDINAAALN-E   93 (195)
T ss_pred             HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHhCC----CceeEeccchhcccc-C
Confidence            444455555567999999999999999998865  999999999999999988876653    377778888766654 5


Q ss_pred             CcceEEeccccccCC--ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957          237 FVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      +||+|++..+++|++  +...+++++.++|||||++++.+...... .+.        .+.....++++++.+++.  +|
T Consensus        94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~-~~~--------~~~~~~~~~~~el~~~f~--~~  162 (195)
T TIGR00477        94 DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTAD-YPC--------HMPFSFTFKEDELRQYYA--DW  162 (195)
T ss_pred             CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCC-CCC--------CCCcCccCCHHHHHHHhC--CC
Confidence            899999999999985  34689999999999999977665433211 000        012234689999999996  48


Q ss_pred             cEEEE
Q 019957          315 TNYTS  319 (333)
Q Consensus       315 ~~v~~  319 (333)
                      +++..
T Consensus       163 ~~~~~  167 (195)
T TIGR00477       163 ELLKY  167 (195)
T ss_pred             eEEEe
Confidence            87764

Part of a tellurite-reducing operon tehA and tehB

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.73  E-value=1.1e-16  Score=140.37  Aligned_cols=159  Identities=20%  Similarity=0.288  Sum_probs=120.9

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-C
Q 019957          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F  233 (333)
Q Consensus       155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~  233 (333)
                      ++.+...+...++.+|||||||+|.++..+.+.+.  +++++|+++.+++.+++++...+    ..+.++..++...+ .
T Consensus        37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~  110 (233)
T PRK05134         37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALESG----LKIDYRQTTAEELAAE  110 (233)
T ss_pred             HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHHcC----CceEEEecCHHHhhhh
Confidence            34555555556788999999999999999988754  89999999999999998876643    25778888887664 3


Q ss_pred             CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcch--hhHH-HHH----hhhccCCCCCHHHHH
Q 019957          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL--TGRV-LRE----RILQNYNYLTEEEIE  306 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~--~~~~-~~~----~~~~~~~~~t~~~l~  306 (333)
                      .+++||+|++..+++|++++..+++.+.++|+|||.+++.++.........  .... ...    ....+..+++.+++.
T Consensus       111 ~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (233)
T PRK05134        111 HPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELA  190 (233)
T ss_pred             cCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHH
Confidence            457999999999999999999999999999999999999876543111000  0000 000    011234578999999


Q ss_pred             HHHHhCCCcEEEE
Q 019957          307 DLCTSCGLTNYTS  319 (333)
Q Consensus       307 ~ll~~aGf~~v~~  319 (333)
                      ++++++||+++..
T Consensus       191 ~~l~~~Gf~~v~~  203 (233)
T PRK05134        191 AWLRQAGLEVQDI  203 (233)
T ss_pred             HHHHHCCCeEeee
Confidence            9999999998875

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.72  E-value=9.2e-16  Score=129.99  Aligned_cols=134  Identities=19%  Similarity=0.185  Sum_probs=106.8

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      ..+...+...++.+|||+|||+|.++..+++.++..+++++|+++.+++.+++++...+   ..++.++.+|+.. ++ .
T Consensus        21 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~---~~~i~~~~~d~~~-~~-~   95 (187)
T PRK08287         21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG---CGNIDIIPGEAPI-EL-P   95 (187)
T ss_pred             HHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC---CCCeEEEecCchh-hc-C
Confidence            44556666667889999999999999999988877899999999999999999887765   3478999988742 33 3


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCc
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT  315 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~  315 (333)
                      ++||+|++....++   ...+++.+.++|+|||++++.....                      -+.+++..+++++||+
T Consensus        96 ~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~~~----------------------~~~~~~~~~l~~~g~~  150 (187)
T PRK08287         96 GKADAIFIGGSGGN---LTAIIDWSLAHLHPGGRLVLTFILL----------------------ENLHSALAHLEKCGVS  150 (187)
T ss_pred             cCCCEEEECCCccC---HHHHHHHHHHhcCCCeEEEEEEecH----------------------hhHHHHHHHHHHCCCC
Confidence            58999999876544   4677999999999999998865322                      1346788899999997


Q ss_pred             EEEE
Q 019957          316 NYTS  319 (333)
Q Consensus       316 ~v~~  319 (333)
                      .++.
T Consensus       151 ~~~~  154 (187)
T PRK08287        151 ELDC  154 (187)
T ss_pred             cceE
Confidence            6553

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.72  E-value=2.1e-16  Score=137.81  Aligned_cols=148  Identities=23%  Similarity=0.296  Sum_probs=115.7

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC-CCCcceEEec
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAG  244 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~  244 (333)
                      .+.+|||+|||+|.++..+.+.+.  .++++|+++.+++.+++++...+   ..++.+..+|+.+.+.. .++||+|++.
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~D~i~~~  119 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDP---LLKIEYRCTSVEDLAEKGAKSFDVVTCM  119 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcC---CCceEEEeCCHHHhhcCCCCCccEEEeh
Confidence            467999999999999999888765  79999999999999999887654   22688888998776644 3789999999


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHH-----HHh----hhccCCCCCHHHHHHHHHhCCCc
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVL-----RER----ILQNYNYLTEEEIEDLCTSCGLT  315 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~t~~~l~~ll~~aGf~  315 (333)
                      ++++|+.++..+++++.++|+|||.+++.+.+...  ..+.....     ...    ......+++.+++.++++++||+
T Consensus       120 ~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~  197 (224)
T TIGR01983       120 EVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTP--KSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLR  197 (224)
T ss_pred             hHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCc--hHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCe
Confidence            99999999999999999999999999998765431  11111100     000    01223567899999999999999


Q ss_pred             EEEEE
Q 019957          316 NYTSK  320 (333)
Q Consensus       316 ~v~~~  320 (333)
                      +++..
T Consensus       198 i~~~~  202 (224)
T TIGR01983       198 VKDVK  202 (224)
T ss_pred             eeeee
Confidence            98753

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.70  E-value=1.9e-16  Score=138.56  Aligned_cols=155  Identities=17%  Similarity=0.215  Sum_probs=109.0

Q ss_pred             HHHHHhhcc---cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957          156 KMAQEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (333)
Q Consensus       156 ~~~~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (333)
                      +.+...+..   .++.+|||||||+|.++..+++.+.  .++|+|+|+.+++.|+++....+.  ..++.+..+|+..  
T Consensus        50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~~--  123 (230)
T PRK07580         50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGL--AGNITFEVGDLES--  123 (230)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC--ccCcEEEEcCchh--
Confidence            344444443   4567999999999999999998875  799999999999999998877553  3578999988543  


Q ss_pred             CCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH-----hhhccCCCCCHHHH
Q 019957          233 FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-----RILQNYNYLTEEEI  305 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~t~~~l  305 (333)
                       .+++||+|++..+++|++++  ..+++++.+.+++++. +...+...  .... ......     .......+++.+++
T Consensus       124 -~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~-i~~~~~~~--~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~  198 (230)
T PRK07580        124 -LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLI-FTFAPYTP--LLAL-LHWIGGLFPGPSRTTRIYPHREKGI  198 (230)
T ss_pred             -ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEE-EEECCccH--HHHH-HHHhccccCCccCCCCccccCHHHH
Confidence             35789999999999998755  4678888887654443 33221110  0000 111111     11133457889999


Q ss_pred             HHHHHhCCCcEEEEEE
Q 019957          306 EDLCTSCGLTNYTSKV  321 (333)
Q Consensus       306 ~~ll~~aGf~~v~~~~  321 (333)
                      .++++++||++.++..
T Consensus       199 ~~~l~~~Gf~~~~~~~  214 (230)
T PRK07580        199 RRALAAAGFKVVRTER  214 (230)
T ss_pred             HHHHHHCCCceEeeee
Confidence            9999999999888543

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.69  E-value=7e-18  Score=127.82  Aligned_cols=97  Identities=25%  Similarity=0.411  Sum_probs=66.8

Q ss_pred             EEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-C-CCCCcceEEeccccc
Q 019957          171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F-ASGFVDAVHAGAALH  248 (333)
Q Consensus       171 LDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~-~~~~fD~V~~~~vl~  248 (333)
                      ||||||+|.++..+.+..+..+++|+|+|+.+++.+++++....   .........+..+.. . ..++||+|++..++|
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~   77 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVASNVLH   77 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhhhhHh
Confidence            79999999999999999777899999999999988888887754   334444444443332 1 125999999999999


Q ss_pred             cCCChHHHHHHHHHhccCCcEE
Q 019957          249 CWPSPSNAVAEISRILRSGGVF  270 (333)
Q Consensus       249 h~~d~~~~l~~~~r~LkpgG~l  270 (333)
                      |++++..+++.++++|||||+|
T Consensus        78 ~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   78 HLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             --S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhhhHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.69  E-value=2.1e-15  Score=126.84  Aligned_cols=140  Identities=15%  Similarity=0.196  Sum_probs=112.0

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      .++...+...++.+|||+|||+|.++..+...++  +++++|+++.+++.+++++...+    .++.++.+|+.+.+  .
T Consensus         9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~--~   80 (179)
T TIGR00537         9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNN----VGLDVVMTDLFKGV--R   80 (179)
T ss_pred             HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC----CceEEEEccccccc--C
Confidence            3444555555667999999999999999999886  89999999999999999987654    36888999987654  4


Q ss_pred             CCcceEEeccccccCCCh---------------------HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhh
Q 019957          236 GFVDAVHAGAALHCWPSP---------------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERIL  294 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~---------------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~  294 (333)
                      ++||+|+++..+++.++.                     ..+++++.++|||||.+++.+....                
T Consensus        81 ~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~----------------  144 (179)
T TIGR00537        81 GKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN----------------  144 (179)
T ss_pred             CcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----------------
Confidence            589999999887766542                     4579999999999999999875331                


Q ss_pred             ccCCCCCHHHHHHHHHhCCCcEEEEEEeCeE
Q 019957          295 QNYNYLTEEEIEDLCTSCGLTNYTSKVQQSF  325 (333)
Q Consensus       295 ~~~~~~t~~~l~~ll~~aGf~~v~~~~~~~~  325 (333)
                            ...++...+++.||+.......+.+
T Consensus       145 ------~~~~~~~~l~~~gf~~~~~~~~~~~  169 (179)
T TIGR00537       145 ------GEPDTFDKLDERGFRYEIVAERGLF  169 (179)
T ss_pred             ------ChHHHHHHHHhCCCeEEEEEEeecC
Confidence                  2568889999999998876655554

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.68  E-value=1.1e-15  Score=130.27  Aligned_cols=148  Identities=16%  Similarity=0.227  Sum_probs=106.9

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-C-CC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-PF  233 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-l-p~  233 (333)
                      +.+.+.++  ++.+|||||||+|.++..+++.. ...++|+|+++.+++.+++          .++.++.+|+.+ + ++
T Consensus         5 ~~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~----------~~~~~~~~d~~~~l~~~   71 (194)
T TIGR02081         5 ESILNLIP--PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA----------RGVNVIQGDLDEGLEAF   71 (194)
T ss_pred             HHHHHhcC--CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH----------cCCeEEEEEhhhccccc
Confidence            34445543  46799999999999999887654 4478999999999988864          246788899865 4 36


Q ss_pred             CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH-------------hhhccCCCC
Q 019957          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-------------RILQNYNYL  300 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~  300 (333)
                      .+++||+|+++.+++|++++..+|+++.++++   .+++..++.....  .....+..             ....+.+++
T Consensus        72 ~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~---~~ii~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (194)
T TIGR02081        72 PDKSFDYVILSQTLQATRNPEEILDEMLRVGR---HAIVSFPNFGYWR--VRWSILTKGRMPVTGELPYDWYNTPNIHFC  146 (194)
T ss_pred             CCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC---eEEEEcCChhHHH--HHHHHHhCCccccCCCCCccccCCCCcccC
Confidence            67899999999999999999999999888755   4455444321000  00000000             011345689


Q ss_pred             CHHHHHHHHHhCCCcEEEEEE
Q 019957          301 TEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       301 t~~~l~~ll~~aGf~~v~~~~  321 (333)
                      +.+++.++++++||++++...
T Consensus       147 s~~~~~~ll~~~Gf~v~~~~~  167 (194)
T TIGR02081       147 TIADFEDLCGELNLRILDRAA  167 (194)
T ss_pred             cHHHHHHHHHHCCCEEEEEEE
Confidence            999999999999999988644

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.68  E-value=1.8e-15  Score=127.03  Aligned_cols=101  Identities=16%  Similarity=0.220  Sum_probs=86.5

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (333)
                      ++.+|||+|||+|.++..++..++..+|+++|+|+.+++.++++.+..+   ..++.++++|+.+++ .+++||+|++..
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~---~~~i~~i~~d~~~~~-~~~~fD~I~s~~  117 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG---LNNVEIVNGRAEDFQ-HEEQFDVITSRA  117 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC---CCCeEEEecchhhcc-ccCCccEEEehh
Confidence            4779999999999999999888777789999999999999999888776   457999999998874 357999999876


Q ss_pred             ccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          246 ALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                       +   .+....++.+.++|+|||++++..
T Consensus       118 -~---~~~~~~~~~~~~~LkpgG~lvi~~  142 (181)
T TIGR00138       118 -L---ASLNVLLELTLNLLKVGGYFLAYK  142 (181)
T ss_pred             -h---hCHHHHHHHHHHhcCCCCEEEEEc
Confidence             3   456677889999999999999864

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.68  E-value=5.3e-16  Score=127.95  Aligned_cols=126  Identities=23%  Similarity=0.268  Sum_probs=96.2

Q ss_pred             EEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEE
Q 019957          194 VALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT  273 (333)
Q Consensus       194 ~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~  273 (333)
                      +|+|+|+.|++.|+++....+.....+++++++|+.++|+.+++||+|++..+++|++|+..++++++|+|||||.+++.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~   80 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL   80 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence            48999999999998776532210134799999999999999999999999999999999999999999999999999999


Q ss_pred             EecccCCCcch-hh-----------HHHHH-------hhhccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957          274 TFLRYTSSTSL-TG-----------RVLRE-------RILQNYNYLTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       274 ~~~~~~~~~~~-~~-----------~~~~~-------~~~~~~~~~t~~~l~~ll~~aGf~~v~~  319 (333)
                      +...+...... ..           ..+..       .......+.+.+++.++|+++||+.++.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~  145 (160)
T PLN02232         81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACH  145 (160)
T ss_pred             ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceE
Confidence            88754221110 00           00000       0012246789999999999999998874

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.67  E-value=1.6e-15  Score=137.53  Aligned_cols=160  Identities=17%  Similarity=0.180  Sum_probs=107.6

Q ss_pred             HHHHHHHHhhcc---cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC--CCCCeEEEEcc
Q 019957          153 EEFKMAQEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRAD  227 (333)
Q Consensus       153 ~~~~~~~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~--~~~~i~~~~~d  227 (333)
                      ...+.+.+++..   .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.++++.+..+..  ...++.+..+|
T Consensus       128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D  205 (315)
T PLN02585        128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND  205 (315)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc
Confidence            334555555543   2567999999999999999998764  9999999999999999987654210  02467888888


Q ss_pred             CCCCCCCCCCcceEEeccccccCCChH--HHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhh-----ccCCCC
Q 019957          228 VCRLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERIL-----QNYNYL  300 (333)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  300 (333)
                      +..+   +++||+|++..+++|+++..  .+++.+.+ +.+||.++...+..  ..... .+.+....+     ...+++
T Consensus       206 l~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~--~~~~~-l~~~g~~~~g~~~~~r~y~~  278 (315)
T PLN02585        206 LESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKT--LYYDI-LKRIGELFPGPSKATRAYLH  278 (315)
T ss_pred             hhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcc--hHHHH-HHHHHhhcCCCCcCceeeeC
Confidence            7654   57899999999999997753  45566654 45555544322211  11111 111111111     112356


Q ss_pred             CHHHHHHHHHhCCCcEEEEEE
Q 019957          301 TEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       301 t~~~l~~ll~~aGf~~v~~~~  321 (333)
                      ++++++++++++||++.....
T Consensus       279 s~eel~~lL~~AGf~v~~~~~  299 (315)
T PLN02585        279 AEADVERALKKAGWKVARREM  299 (315)
T ss_pred             CHHHHHHHHHHCCCEEEEEEE
Confidence            899999999999999877543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.67  E-value=5.9e-16  Score=149.73  Aligned_cols=149  Identities=20%  Similarity=0.268  Sum_probs=115.3

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC--CCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC--RLPF  233 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~--~lp~  233 (333)
                      ..+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+++.+++.+++....     .+++.++++|+.  .+++
T Consensus        27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~-----~~~i~~~~~d~~~~~~~~   99 (475)
T PLN02336         27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGH-----YKNVKFMCADVTSPDLNI   99 (475)
T ss_pred             hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhcc-----CCceEEEEecccccccCC
Confidence            4555566655677999999999999999998865  999999999999887653221     457899999996  4567


Q ss_pred             CCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHh
Q 019957          234 ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTS  311 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~  311 (333)
                      ++++||+|++..+++|+++.  ..+++++.++|||||++++.+......     . .+ .......++.+...+..++.+
T Consensus       100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~-----~-~~-~~~~~~~~~~~~~~~~~~f~~  172 (475)
T PLN02336        100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQS-----G-DS-KRKNNPTHYREPRFYTKVFKE  172 (475)
T ss_pred             CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC-----C-cc-cccCCCCeecChHHHHHHHHH
Confidence            78899999999999999874  689999999999999999987543210     0 00 111133445668899999999


Q ss_pred             CCCcEEE
Q 019957          312 CGLTNYT  318 (333)
Q Consensus       312 aGf~~v~  318 (333)
                      +||....
T Consensus       173 ~~~~~~~  179 (475)
T PLN02336        173 CHTRDED  179 (475)
T ss_pred             heeccCC
Confidence            9998764

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.67  E-value=1.7e-15  Score=141.51  Aligned_cols=151  Identities=15%  Similarity=0.115  Sum_probs=112.7

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      ..+.+.+...++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.++++...      ..+.+...|...+   +
T Consensus       157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l---~  226 (383)
T PRK11705        157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL---N  226 (383)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc---C
Confidence            445566666778899999999999999998874 45999999999999999987632      2477888887765   4


Q ss_pred             CCcceEEeccccccCCC--hHHHHHHHHHhccCCcEEEEEEecccCC---CcchhhHHHHHhhhccCCCCCHHHHHHHHH
Q 019957          236 GFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTS---STSLTGRVLRERILQNYNYLTEEEIEDLCT  310 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~  310 (333)
                      ++||+|++..+++|+.+  +..+++++.++|||||.+++.++.....   ...++.    ..........+.+++...++
T Consensus       227 ~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~----~yifp~g~lps~~~i~~~~~  302 (383)
T PRK11705        227 GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWIN----KYIFPNGCLPSVRQIAQASE  302 (383)
T ss_pred             CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCce----eeecCCCcCCCHHHHHHHHH
Confidence            68999999999999954  4689999999999999999988654321   111111    11112234567888888766


Q ss_pred             hCCCcEEEEEE
Q 019957          311 SCGLTNYTSKV  321 (333)
Q Consensus       311 ~aGf~~v~~~~  321 (333)
                       .||++.....
T Consensus       303 -~~~~v~d~~~  312 (383)
T PRK11705        303 -GLFVMEDWHN  312 (383)
T ss_pred             -CCcEEEEEec
Confidence             5898776543

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.67  E-value=1.9e-15  Score=126.60  Aligned_cols=143  Identities=16%  Similarity=0.192  Sum_probs=104.8

Q ss_pred             HHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCC
Q 019957          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (333)
Q Consensus       158 ~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (333)
                      +.+.++..+++++||+|||.|+.+.+|+++|.  +|+++|.|+..++.+++..+..++    .+.....|+....++ +.
T Consensus        22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~~l----~i~~~~~Dl~~~~~~-~~   94 (192)
T PF03848_consen   22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEEGL----DIRTRVADLNDFDFP-EE   94 (192)
T ss_dssp             HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHTT-----TEEEEE-BGCCBS-T-TT
T ss_pred             HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhcCc----eeEEEEecchhcccc-CC
Confidence            34445555678999999999999999999988  999999999999999888877654    599999999887764 68


Q ss_pred             cceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCc
Q 019957          238 VDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT  315 (333)
Q Consensus       238 fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~  315 (333)
                      ||+|++..|++|+..+  ..+++.+...++|||++++.+...... .+.        .......+.+.|+...+.  ||+
T Consensus        95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d-~p~--------~~~~~f~~~~~EL~~~y~--dW~  163 (192)
T PF03848_consen   95 YDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPD-YPC--------PSPFPFLLKPGELREYYA--DWE  163 (192)
T ss_dssp             EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SS-S----------SS--S--B-TTHHHHHTT--TSE
T ss_pred             cCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCC-CCC--------CCCCCcccCHHHHHHHhC--CCe
Confidence            9999999999998644  568999999999999999977654321 111        112344567789998887  587


Q ss_pred             EEE
Q 019957          316 NYT  318 (333)
Q Consensus       316 ~v~  318 (333)
                      +++
T Consensus       164 il~  166 (192)
T PF03848_consen  164 ILK  166 (192)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            766

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.67  E-value=8.8e-16  Score=131.54  Aligned_cols=108  Identities=19%  Similarity=0.232  Sum_probs=90.6

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC-CCCC--CCCCCcceEE
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLP--FASGFVDAVH  242 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp--~~~~~fD~V~  242 (333)
                      ++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.+++++...+   ..++.++++|+ ..++  +++++||+|+
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~l~~~~~~~~~D~V~  116 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG---LTNLRLLCGDAVEVLLDMFPDGSLDRIY  116 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC---CCCEEEEecCHHHHHHHHcCccccceEE
Confidence            5679999999999999999988777799999999999999999888765   46799999999 6665  6678999999


Q ss_pred             eccccccCC--------ChHHHHHHHHHhccCCcEEEEEEec
Q 019957          243 AGAALHCWP--------SPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       243 ~~~vl~h~~--------d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      +.....+..        ....+++++.++|||||.|++.+..
T Consensus       117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~  158 (202)
T PRK00121        117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW  158 (202)
T ss_pred             EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence            876543221        1367899999999999999998754

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.66  E-value=4.6e-15  Score=127.69  Aligned_cols=139  Identities=22%  Similarity=0.193  Sum_probs=103.1

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC---------cCCCCCeEEEEccCCCCCCC-
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN---------TILTSNLALVRADVCRLPFA-  234 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~---------~~~~~~i~~~~~d~~~lp~~-  234 (333)
                      .++.+|||+|||.|..+..|+++|.  +|+|+|+|+.+++.+.+......         .....+++++++|+.+++.. 
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            3567999999999999999999987  99999999999998644221100         00134689999999887643 


Q ss_pred             CCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhC
Q 019957          235 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC  312 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~a  312 (333)
                      .+.||.|+...+++|++..  ...++.+.++|||||++++.+.......  .         ....+.++.+++.+++.. 
T Consensus       111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~--~---------~gpp~~~~~~eL~~~f~~-  178 (213)
T TIGR03840       111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSE--M---------AGPPFSVSPAEVEALYGG-  178 (213)
T ss_pred             CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCC--C---------CCcCCCCCHHHHHHHhcC-
Confidence            4579999999999999644  3689999999999999888776542110  0         112346899999999964 


Q ss_pred             CCcEE
Q 019957          313 GLTNY  317 (333)
Q Consensus       313 Gf~~v  317 (333)
                      +|++.
T Consensus       179 ~~~i~  183 (213)
T TIGR03840       179 HYEIE  183 (213)
T ss_pred             CceEE
Confidence            34443

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK04266 fibrillarin; Provisional

Probab=99.66  E-value=1.7e-14  Score=125.16  Aligned_cols=148  Identities=16%  Similarity=0.169  Sum_probs=104.9

Q ss_pred             hhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC----CCCCC
Q 019957          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASG  236 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~  236 (333)
                      .+...++.+|||+|||+|.++..+++..+...|+++|+++.|++.+.++.+.     ..++.++.+|+...    ++ .+
T Consensus        67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-----~~nv~~i~~D~~~~~~~~~l-~~  140 (226)
T PRK04266         67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-----RKNIIPILADARKPERYAHV-VE  140 (226)
T ss_pred             hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-----cCCcEEEECCCCCcchhhhc-cc
Confidence            3666778899999999999999999875455899999999999988776554     35788999998652    22 35


Q ss_pred             CcceEEeccccccCCCh---HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCC
Q 019957          237 FVDAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCG  313 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aG  313 (333)
                      +||+|++.     +.+|   ..+++++.++|||||.++++.+...   ..+..        .+...  .++..++++++|
T Consensus       141 ~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~---~d~~~--------~~~~~--~~~~~~~l~~aG  202 (226)
T PRK04266        141 KVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARS---IDVTK--------DPKEI--FKEEIRKLEEGG  202 (226)
T ss_pred             cCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEeccc---ccCcC--------CHHHH--HHHHHHHHHHcC
Confidence            69999853     3344   3458999999999999999654321   11100        00011  134459999999


Q ss_pred             CcEEEEEEeCeE----EEEEEeC
Q 019957          314 LTNYTSKVQQSF----IMFAAQK  332 (333)
Q Consensus       314 f~~v~~~~~~~~----~~~~a~k  332 (333)
                      |+.++......|    +++++++
T Consensus       203 F~~i~~~~l~p~~~~h~~~v~~~  225 (226)
T PRK04266        203 FEILEVVDLEPYHKDHAAVVARK  225 (226)
T ss_pred             CeEEEEEcCCCCcCCeEEEEEEc
Confidence            999987665444    5555554

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.66  E-value=2.7e-16  Score=119.56  Aligned_cols=95  Identities=32%  Similarity=0.552  Sum_probs=79.8

Q ss_pred             EEEEcCCcCHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec-c
Q 019957          170 LVDVSCGSGLFSRKFAKSG---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG-A  245 (333)
Q Consensus       170 vLDiGcG~G~~~~~l~~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~-~  245 (333)
                      |||+|||+|..+..+.+.+   +..+++|+|+|+.+++.++++....+    .+++++++|+.++++.+++||+|+++ .
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~----~~~~~~~~D~~~l~~~~~~~D~v~~~~~   76 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG----PKVRFVQADARDLPFSDGKFDLVVCSGL   76 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT----TTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC----CceEEEECCHhHCcccCCCeeEEEEcCC
Confidence            7999999999999999885   34699999999999999999887643    48999999999998888899999995 5


Q ss_pred             ccccCCCh--HHHHHHHHHhccCCc
Q 019957          246 ALHCWPSP--SNAVAEISRILRSGG  268 (333)
Q Consensus       246 vl~h~~d~--~~~l~~~~r~LkpgG  268 (333)
                      +++|+.+.  ..+++++.++|||||
T Consensus        77 ~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   77 SLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            59998754  589999999999998

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.66  E-value=5.6e-15  Score=130.82  Aligned_cols=133  Identities=20%  Similarity=0.314  Sum_probs=104.9

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++.+|||+|||+|.++..+++.+. .+++|+|+|+.+++.|++++..+++  ...+.+..+        +.+||+|+++
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~--~~~~~~~~~--------~~~fD~Vvan  186 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGV--ELNVYLPQG--------DLKADVIVAN  186 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCC--CceEEEccC--------CCCcCEEEEc
Confidence            4578999999999999998887764 3699999999999999999887653  233333222        2279999987


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEEeCe
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQS  324 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~~~~  324 (333)
                      ...+.   ...++.++.++|||||.+++......                      ..+++...+++.||++++....+.
T Consensus       187 i~~~~---~~~l~~~~~~~LkpgG~lilsgi~~~----------------------~~~~v~~~l~~~Gf~~~~~~~~~~  241 (250)
T PRK00517        187 ILANP---LLELAPDLARLLKPGGRLILSGILEE----------------------QADEVLEAYEEAGFTLDEVLERGE  241 (250)
T ss_pred             CcHHH---HHHHHHHHHHhcCCCcEEEEEECcHh----------------------hHHHHHHHHHHCCCEEEEEEEeCC
Confidence            54332   35678999999999999999764321                      346888999999999999999999


Q ss_pred             EEEEEEeCC
Q 019957          325 FIMFAAQKP  333 (333)
Q Consensus       325 ~~~~~a~kp  333 (333)
                      |..+.++|+
T Consensus       242 W~~~~~~~~  250 (250)
T PRK00517        242 WVALVGKKK  250 (250)
T ss_pred             EEEEEEEeC
Confidence            999998875

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.66  E-value=8.6e-15  Score=121.21  Aligned_cols=153  Identities=16%  Similarity=0.204  Sum_probs=107.2

Q ss_pred             HHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCc
Q 019957          159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV  238 (333)
Q Consensus       159 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f  238 (333)
                      ...++...-.++||+|||.|.++..|+.+..  +++++|+|+.+++.|++++..     .+++.++++|+.+. .+.++|
T Consensus        36 ~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~-----~~~V~~~~~dvp~~-~P~~~F  107 (201)
T PF05401_consen   36 LAALPRRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAG-----LPHVEWIQADVPEF-WPEGRF  107 (201)
T ss_dssp             HHHHTTSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT----SS-E
T ss_pred             HHhcCccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCC-----CCCeEEEECcCCCC-CCCCCe
Confidence            3345555557899999999999999999975  999999999999999999876     56899999999775 357899


Q ss_pred             ceEEeccccccCCCh---HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCc
Q 019957          239 DAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT  315 (333)
Q Consensus       239 D~V~~~~vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~  315 (333)
                      |+|+++.+++++.+.   ..+++.+...|+|||.|++.+....          .-.+   -.+.+..+.+.++|.+. |.
T Consensus       108 DLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~----------~c~~---wgh~~ga~tv~~~~~~~-~~  173 (201)
T PF05401_consen  108 DLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA----------NCRR---WGHAAGAETVLEMLQEH-LT  173 (201)
T ss_dssp             EEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH----------HHHH---TT-S--HHHHHHHHHHH-SE
T ss_pred             eEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC----------cccc---cCcccchHHHHHHHHHH-hh
Confidence            999999999999764   4688999999999999999885321          1111   12456889999999876 55


Q ss_pred             EEEEEE------eCeEEEEEEeCC
Q 019957          316 NYTSKV------QQSFIMFAAQKP  333 (333)
Q Consensus       316 ~v~~~~------~~~~~~~~a~kp  333 (333)
                      .|+...      +...++...+||
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~  197 (201)
T PF05401_consen  174 EVERVECRGGSPNEDCLLARFRNP  197 (201)
T ss_dssp             EEEEEEEE-SSTTSEEEEEEEE--
T ss_pred             heeEEEEcCCCCCCceEeeeecCC
Confidence            555332      233455555554

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.65  E-value=4.5e-15  Score=116.76  Aligned_cols=114  Identities=23%  Similarity=0.231  Sum_probs=93.1

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFA  234 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~  234 (333)
                      ..+.+.+...++.+|||+|||+|.++..+++..+..+++++|+++.+++.+++++...+   ..++.++.+|+.. ++..
T Consensus         9 ~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~   85 (124)
T TIGR02469         9 ALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG---VSNIVIVEGDAPEALEDS   85 (124)
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC---CCceEEEeccccccChhh
Confidence            44555666556779999999999999999998767799999999999999999888765   4578899888765 3333


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      .++||+|++....++   ...+++++.+.|||||.+++...
T Consensus        86 ~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        86 LPEPDRVFIGGSGGL---LQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             cCCCCEEEECCcchh---HHHHHHHHHHHcCCCCEEEEEec
Confidence            468999999776544   35889999999999999998753

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.65  E-value=2.3e-14  Score=122.51  Aligned_cols=133  Identities=17%  Similarity=0.247  Sum_probs=103.2

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-CC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PF  233 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~  233 (333)
                      ......+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.++++++..++  ..++.++.+|+.+. +.
T Consensus        30 ~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~--~~~v~~~~~d~~~~l~~  107 (198)
T PRK00377         30 ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV--LNNIVLIKGEAPEILFT  107 (198)
T ss_pred             HHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCCeEEEEechhhhHhh
Confidence            33445667778889999999999999988765 4456899999999999999999888764  46789999998763 33


Q ss_pred             CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCC
Q 019957          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCG  313 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aG  313 (333)
                      .+++||.|++..   ...++..+++++.++|||||++++......                      +..++...+++.|
T Consensus       108 ~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~----------------------~~~~~~~~l~~~g  162 (198)
T PRK00377        108 INEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAILLE----------------------TVNNALSALENIG  162 (198)
T ss_pred             cCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEeecHH----------------------HHHHHHHHHHHcC
Confidence            346899999854   345678899999999999999987553211                      2356777788888


Q ss_pred             Cc
Q 019957          314 LT  315 (333)
Q Consensus       314 f~  315 (333)
                      |.
T Consensus       163 ~~  164 (198)
T PRK00377        163 FN  164 (198)
T ss_pred             CC
Confidence            84

>PLN03075 nicotianamine synthase; Provisional

Probab=99.65  E-value=8e-15  Score=130.46  Aligned_cols=107  Identities=10%  Similarity=0.070  Sum_probs=89.7

Q ss_pred             CCCeEEEEcCCcCHHHHH--HHHhCCCCeEEEEeCCHHHHHHHHHHHHh-cCcCCCCCeEEEEccCCCCCCCCCCcceEE
Q 019957          166 QGGLLVDVSCGSGLFSRK--FAKSGTYSGVVALDFSENMLRQCYDFIKQ-DNTILTSNLALVRADVCRLPFASGFVDAVH  242 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~--l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (333)
                      ++.+|+|||||.|.++..  ++..+++++++|+|+++++++.|++.+.. .++  ..+++|..+|+.+.+...+.||+|+
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL--~~rV~F~~~Da~~~~~~l~~FDlVF  200 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL--SKRMFFHTADVMDVTESLKEYDVVF  200 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc--cCCcEEEECchhhcccccCCcCEEE
Confidence            678999999998844333  33457888999999999999999999864 554  5689999999987643357899999


Q ss_pred             eccccccC--CChHHHHHHHHHhccCCcEEEEEEe
Q 019957          243 AGAALHCW--PSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       243 ~~~vl~h~--~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      +. +++++  +++.++++.+.+.|+|||.+++...
T Consensus       201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~  234 (296)
T PLN03075        201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA  234 (296)
T ss_pred             Ee-cccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence            99 88888  6889999999999999999999773

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.64  E-value=5.2e-15  Score=126.72  Aligned_cols=102  Identities=12%  Similarity=0.235  Sum_probs=85.6

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (333)
                      ++.+|||||||+|.++..+.+..+..+++|+|+|+.+++.|+++        .+++.+..+|+.+ |+++++||+|++..
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~--------~~~~~~~~~d~~~-~~~~~sfD~V~~~~  113 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY--------LPNINIIQGSLFD-PFKDNFFDLVLTKG  113 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh--------CCCCcEEEeeccC-CCCCCCEEEEEECC
Confidence            46789999999999999998875567999999999999999875        3457788999887 88889999999999


Q ss_pred             ccccCC--ChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957          246 ALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       246 vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      +|+|++  +..++++++.+++  ++.+++.+...+
T Consensus       114 vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~  146 (204)
T TIGR03587       114 VLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP  146 (204)
T ss_pred             hhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence            999995  2357888888887  568888776543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.63  E-value=1.3e-15  Score=126.45  Aligned_cols=150  Identities=15%  Similarity=0.141  Sum_probs=118.0

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCC
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (333)
                      -+...+...+..+|.|+|||+|..+..|.++.|...++|+|-|++|++.|+++        .++++|..+|+.... +..
T Consensus        21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r--------lp~~~f~~aDl~~w~-p~~   91 (257)
T COG4106          21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR--------LPDATFEEADLRTWK-PEQ   91 (257)
T ss_pred             HHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh--------CCCCceecccHhhcC-CCC
Confidence            34555666778899999999999999999999999999999999999999886        788999999998875 356


Q ss_pred             CcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHH------HHHhhh----ccCCCCCHHHHH
Q 019957          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV------LRERIL----QNYNYLTEEEIE  306 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~------~~~~~~----~~~~~~t~~~l~  306 (333)
                      .+|+++++.+|++++|-.++|..+...|.|||+|.+..|...........+.      |.....    ......+....-
T Consensus        92 ~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy  171 (257)
T COG4106          92 PTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYY  171 (257)
T ss_pred             ccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHH
Confidence            8999999999999999999999999999999999998876532111111111      111111    234456777778


Q ss_pred             HHHHhCCCc
Q 019957          307 DLCTSCGLT  315 (333)
Q Consensus       307 ~ll~~aGf~  315 (333)
                      ++|...+-+
T Consensus       172 ~lLa~~~~r  180 (257)
T COG4106         172 ELLAPLACR  180 (257)
T ss_pred             HHhCcccce
Confidence            888777654

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.63  E-value=9.1e-15  Score=118.09  Aligned_cols=133  Identities=20%  Similarity=0.346  Sum_probs=111.1

Q ss_pred             CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecccc
Q 019957          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL  247 (333)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl  247 (333)
                      .+|||+|||+|.++..|++.+.....+|+|.|+.+++.|+...+..+.  ...|.|.+.|+....+..++||+|+--+.+
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~--~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~  146 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF--SNEIRFQQLDITDPDFLSGQFDLVLDKGTL  146 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC--CcceeEEEeeccCCcccccceeEEeecCce
Confidence            399999999999999999998666799999999999999999888875  445999999998877888999999976666


Q ss_pred             ccCC--------ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957          248 HCWP--------SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       248 ~h~~--------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~  319 (333)
                      ..+.        .+...+..+.+.|+|||+|+|..-+                       ||.+|+.+.++..||+....
T Consensus       147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN-----------------------~T~dELv~~f~~~~f~~~~t  203 (227)
T KOG1271|consen  147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN-----------------------FTKDELVEEFENFNFEYLST  203 (227)
T ss_pred             eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC-----------------------ccHHHHHHHHhcCCeEEEEe
Confidence            5431        1235678889999999999997743                       57899999999999998886


Q ss_pred             EEeCeE
Q 019957          320 KVQQSF  325 (333)
Q Consensus       320 ~~~~~~  325 (333)
                      .....|
T Consensus       204 vp~ptF  209 (227)
T KOG1271|consen  204 VPTPTF  209 (227)
T ss_pred             eccceE
Confidence            554444

>PRK06922 hypothetical protein; Provisional

Probab=99.62  E-value=4.3e-15  Score=143.63  Aligned_cols=107  Identities=19%  Similarity=0.299  Sum_probs=93.2

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--CCCCCcceEE
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVH  242 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~  242 (333)
                      .++.+|||||||+|.++..+++..++.+++|+|+|+.|++.++++....    ..++.++++|+.++|  +++++||+|+
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~----g~~ie~I~gDa~dLp~~fedeSFDvVV  492 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE----GRSWNVIKGDAINLSSSFEKESVDTIV  492 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----CCCeEEEEcchHhCccccCCCCEEEEE
Confidence            3578999999999999999998888889999999999999999876543    246788999998887  7788999999


Q ss_pred             eccccccCC-------------ChHHHHHHHHHhccCCcEEEEEEe
Q 019957          243 AGAALHCWP-------------SPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       243 ~~~vl~h~~-------------d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ++.++||+.             ++.++|+++.++|||||.+++.+.
T Consensus       493 sn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        493 YSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             EchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            999998762             457899999999999999999875

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.62  E-value=1.4e-14  Score=124.39  Aligned_cols=113  Identities=20%  Similarity=0.185  Sum_probs=92.9

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (333)
                      ....+.+.+...++.+|||||||+|+.+..+++.. +..+|+++|+++.+++.+++++...+.  ..++.++.+|+.+..
T Consensus        60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~--~~~v~~~~~d~~~~~  137 (205)
T PRK13944         60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY--WGVVEVYHGDGKRGL  137 (205)
T ss_pred             HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CCcEEEEECCcccCC
Confidence            44666677777778899999999999998888764 245899999999999999999887663  346899999997654


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      ...++||+|++..+++|++      +++.++|+|||++++..
T Consensus       138 ~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        138 EKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV  173 (205)
T ss_pred             ccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence            4467999999999988765      46889999999998854

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.62  E-value=2.2e-14  Score=123.96  Aligned_cols=140  Identities=21%  Similarity=0.191  Sum_probs=102.1

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC---------cCCCCCeEEEEccCCCCCCC-
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN---------TILTSNLALVRADVCRLPFA-  234 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~---------~~~~~~i~~~~~d~~~lp~~-  234 (333)
                      .++.+|||+|||.|..+..|+++|.  +|+|+|+|+.+++.+.+......         .....++++.++|+.+++.. 
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~  113 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD  113 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence            4567999999999999999999887  99999999999998753211100         00135789999999887533 


Q ss_pred             CCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhC
Q 019957          235 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC  312 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~a  312 (333)
                      .+.||+|+...+++|++..  .+.++.+.++|||||++++.+.......  .         ......++.+++.+++.. 
T Consensus       114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~--~---------~gPp~~~~~~el~~~~~~-  181 (218)
T PRK13255        114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE--L---------AGPPFSVSDEEVEALYAG-  181 (218)
T ss_pred             CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc--C---------CCCCCCCCHHHHHHHhcC-
Confidence            3589999999999999644  4789999999999998666554432110  0         112246899999999964 


Q ss_pred             CCcEEE
Q 019957          313 GLTNYT  318 (333)
Q Consensus       313 Gf~~v~  318 (333)
                      +|++..
T Consensus       182 ~~~i~~  187 (218)
T PRK13255        182 CFEIEL  187 (218)
T ss_pred             CceEEE
Confidence            254443

>PRK14968 putative methyltransferase; Provisional

Probab=99.61  E-value=7.2e-14  Score=118.26  Aligned_cols=138  Identities=20%  Similarity=0.246  Sum_probs=104.2

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      ..+.+.+...++.+|||+|||+|.++..+++.+  .+++++|+|+.+++.+++++...+.. ..++.++.+|+.+ ++.+
T Consensus        13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~-~~~~   88 (188)
T PRK14968         13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLNNIR-NNGVEVIRSDLFE-PFRG   88 (188)
T ss_pred             HHHHHhhhccCCCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHcCCC-CcceEEEeccccc-cccc
Confidence            444555555667899999999999999999884  49999999999999999988776531 1128888898865 3345


Q ss_pred             CCcceEEeccccccCC---------------------ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhh
Q 019957          236 GFVDAVHAGAALHCWP---------------------SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERIL  294 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~---------------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~  294 (333)
                      ++||+|+++..+.+..                     ....+++++.++|||||.+++..+..                 
T Consensus        89 ~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~-----------------  151 (188)
T PRK14968         89 DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL-----------------  151 (188)
T ss_pred             cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc-----------------
Confidence            5899999875543311                     13457999999999999998866321                 


Q ss_pred             ccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957          295 QNYNYLTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       295 ~~~~~~t~~~l~~ll~~aGf~~v~~  319 (333)
                           ...+++..+++++||++...
T Consensus       152 -----~~~~~l~~~~~~~g~~~~~~  171 (188)
T PRK14968        152 -----TGEDEVLEYLEKLGFEAEVV  171 (188)
T ss_pred             -----CCHHHHHHHHHHCCCeeeee
Confidence                 23467889999999987664

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.60  E-value=9.5e-15  Score=124.44  Aligned_cols=109  Identities=18%  Similarity=0.253  Sum_probs=90.1

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---CCCCCcceEE
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVH  242 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~V~  242 (333)
                      ...+|||||||+|.++..+++..|...++|+|+++.+++.++++....+   ..++.++++|+.+++   ++++++|.|+
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~---l~ni~~i~~d~~~~~~~~~~~~~~d~v~   92 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG---LKNLHVLCGDANELLDKFFPDGSLSKVF   92 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC---CCCEEEEccCHHHHHHhhCCCCceeEEE
Confidence            3458999999999999999999888899999999999999999888776   458999999997653   4456899999


Q ss_pred             eccccccCCCh--------HHHHHHHHHhccCCcEEEEEEecc
Q 019957          243 AGAALHCWPSP--------SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       243 ~~~vl~h~~d~--------~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      +.....+....        ..+++++.++|||||.|++.+...
T Consensus        93 ~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~  135 (194)
T TIGR00091        93 LNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE  135 (194)
T ss_pred             EECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence            87643332221        468999999999999999988554

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=9.3e-14  Score=123.27  Aligned_cols=147  Identities=18%  Similarity=0.328  Sum_probs=113.6

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (333)
Q Consensus       155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (333)
                      ++.+.+++.  ++.+|||+|||+|-++..+++.| ..+++|+|+++.+++.++++...+++  ...+.....+....+ .
T Consensus       153 L~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v--~~~~~~~~~~~~~~~-~  226 (300)
T COG2264         153 LEALEKLLK--KGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGV--ELLVQAKGFLLLEVP-E  226 (300)
T ss_pred             HHHHHHhhc--CCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCC--chhhhcccccchhhc-c
Confidence            345555544  57899999999999999999998 45799999999999999999998875  222223323333322 2


Q ss_pred             CCCcceEEeccccccCCCh-HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCC
Q 019957          235 SGFVDAVHAGAALHCWPSP-SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCG  313 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~-~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aG  313 (333)
                      .++||+|+++=.    .++ ..+...+.+.|||||.++++-....                      -.+.+.+.++++|
T Consensus       227 ~~~~DvIVANIL----A~vl~~La~~~~~~lkpgg~lIlSGIl~~----------------------q~~~V~~a~~~~g  280 (300)
T COG2264         227 NGPFDVIVANIL----AEVLVELAPDIKRLLKPGGRLILSGILED----------------------QAESVAEAYEQAG  280 (300)
T ss_pred             cCcccEEEehhh----HHHHHHHHHHHHHHcCCCceEEEEeehHh----------------------HHHHHHHHHHhCC
Confidence            369999998642    233 4678889999999999999875432                      1367889999999


Q ss_pred             CcEEEEEEeCeEEEEEEeCC
Q 019957          314 LTNYTSKVQQSFIMFAAQKP  333 (333)
Q Consensus       314 f~~v~~~~~~~~~~~~a~kp  333 (333)
                      |++++......|..++++|+
T Consensus       281 f~v~~~~~~~eW~~i~~kr~  300 (300)
T COG2264         281 FEVVEVLEREEWVAIVGKRK  300 (300)
T ss_pred             CeEeEEEecCCEEEEEEEcC
Confidence            99999999999999999874

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.58  E-value=4.4e-14  Score=121.92  Aligned_cols=114  Identities=17%  Similarity=0.154  Sum_probs=93.9

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      ......+.+.+...++.+|||||||+|+++..+++.. +..+|+++|+++.+++.+++++...+   ..++.++.+|...
T Consensus        62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g---~~~v~~~~gd~~~  138 (212)
T PRK13942         62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG---YDNVEVIVGDGTL  138 (212)
T ss_pred             HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEECCccc
Confidence            3445667777777788999999999999998888773 34699999999999999999998876   4689999999877


Q ss_pred             CCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      .....+.||+|++....++++      ..+.+.|||||++++..
T Consensus       139 ~~~~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        139 GYEENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CCCcCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEEE
Confidence            655667999999988776653      45677899999998854

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.58  E-value=2.7e-15  Score=125.47  Aligned_cols=170  Identities=18%  Similarity=0.183  Sum_probs=121.2

Q ss_pred             CCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE
Q 019957          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR  225 (333)
Q Consensus       146 ~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~  225 (333)
                      .++..+....++|.. ....+-.++||+|||||.....+...-.  ..+|+|+|++|++.|.++        ..--.+.+
T Consensus       106 L~Y~vP~~l~emI~~-~~~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eK--------g~YD~L~~  174 (287)
T COG4976         106 LGYSVPELLAEMIGK-ADLGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEK--------GLYDTLYV  174 (287)
T ss_pred             hcCccHHHHHHHHHh-ccCCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhc--------cchHHHHH
Confidence            344445444444433 3333457899999999999999998865  899999999999999885        22223455


Q ss_pred             ccCCCC-C-CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHH
Q 019957          226 ADVCRL-P-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEE  303 (333)
Q Consensus       226 ~d~~~l-p-~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  303 (333)
                      +++..+ + ..++.||+|++..||.++.+...++.-+...|+|||.|.++.-....... +..      .+...+-.++.
T Consensus       175 Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~-f~l------~ps~RyAH~~~  247 (287)
T COG4976         175 AEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG-FVL------GPSQRYAHSES  247 (287)
T ss_pred             HHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC-eec------chhhhhccchH
Confidence            555432 2 44679999999999999999999999999999999999998765542211 111      11223345678


Q ss_pred             HHHHHHHhCCCcEEEEEEeC---------eEEEEEEeCC
Q 019957          304 EIEDLCTSCGLTNYTSKVQQ---------SFIMFAAQKP  333 (333)
Q Consensus       304 ~l~~ll~~aGf~~v~~~~~~---------~~~~~~a~kp  333 (333)
                      -++.+++..||+++.+....         .-++++++||
T Consensus       248 YVr~~l~~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark~  286 (287)
T COG4976         248 YVRALLAASGLEVIAIEDTTIRRDAGEPVPGILVIARKK  286 (287)
T ss_pred             HHHHHHHhcCceEEEeecccchhhcCCCCCCceEEEecC
Confidence            89999999999998864321         1166777765

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.58  E-value=3.5e-13  Score=110.79  Aligned_cols=139  Identities=19%  Similarity=0.212  Sum_probs=114.9

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ++.-......|.+.++.+++|||||+|..+..++..+|..+++++|-++++++..+++.+..+   .+++.++.+++.+.
T Consensus        20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg---~~n~~vv~g~Ap~~   96 (187)
T COG2242          20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG---VDNLEVVEGDAPEA   96 (187)
T ss_pred             HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC---CCcEEEEeccchHh
Confidence            344456678888999999999999999999999988999999999999999999999999988   78999999999653


Q ss_pred             -CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHH
Q 019957          232 -PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCT  310 (333)
Q Consensus       232 -p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~  310 (333)
                       + ...++|.|+....    .+...+|+.+...|||||++++......                      +.....+.++
T Consensus        97 L~-~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitlE----------------------~~~~a~~~~~  149 (187)
T COG2242          97 LP-DLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITLE----------------------TLAKALEALE  149 (187)
T ss_pred             hc-CCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecHH----------------------HHHHHHHHHH
Confidence             3 2227999999887    3467889999999999999999775432                      3346678889


Q ss_pred             hCCC-cEEEEE
Q 019957          311 SCGL-TNYTSK  320 (333)
Q Consensus       311 ~aGf-~~v~~~  320 (333)
                      +.|+ ++++..
T Consensus       150 ~~g~~ei~~v~  160 (187)
T COG2242         150 QLGGREIVQVQ  160 (187)
T ss_pred             HcCCceEEEEE
Confidence            9999 666543

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.57  E-value=2.1e-14  Score=127.81  Aligned_cols=109  Identities=14%  Similarity=0.198  Sum_probs=85.4

Q ss_pred             CCCeEEEEcCCcCH----HHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHHHHh----cCcC----------------
Q 019957          166 QGGLLVDVSCGSGL----FSRKFAKSGT-----YSGVVALDFSENMLRQCYDFIKQ----DNTI----------------  216 (333)
Q Consensus       166 ~~~~vLDiGcG~G~----~~~~l~~~~~-----~~~v~g~D~s~~~~~~a~~~~~~----~~~~----------------  216 (333)
                      ++.+|||+|||+|.    ++..+.+.++     ..+++|+|+|+.+++.|++..-.    .+++                
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45689999999996    4445555432     46899999999999999975310    0000                


Q ss_pred             ----CCCCeEEEEccCCCCCCCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEE
Q 019957          217 ----LTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       217 ----~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~  274 (333)
                          -..++.|.++|+.+.+++.++||+|+|.++++|++++  .++++++.++|+|||+|++..
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence                0136899999999887778899999999999999755  479999999999999999854

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.57  E-value=1.2e-14  Score=122.86  Aligned_cols=149  Identities=20%  Similarity=0.246  Sum_probs=111.7

Q ss_pred             CeEEEEcCCcCHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC----CCCCCCCcceE
Q 019957          168 GLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGFVDAV  241 (333)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~~fD~V  241 (333)
                      .+|||||||.|.....+.+..++  ..+++.|.|+.+++..+++....    ..++.-...|+..    -|...+++|+|
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~----e~~~~afv~Dlt~~~~~~~~~~~svD~i  148 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD----ESRVEAFVWDLTSPSLKEPPEEGSVDII  148 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc----hhhhcccceeccchhccCCCCcCccceE
Confidence            38999999999999999888766  78999999999999988765442    2344444555532    24567899999


Q ss_pred             EeccccccCC--ChHHHHHHHHHhccCCcEEEEEEecccCCCcch------hhHH-HHHhhhccCCCCCHHHHHHHHHhC
Q 019957          242 HAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL------TGRV-LRERILQNYNYLTEEEIEDLCTSC  312 (333)
Q Consensus       242 ~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~t~~~l~~ll~~a  312 (333)
                      ++.+||-.++  ....++..++++|||||.+++.++..++...-.      +... +........++|+.+++..++.++
T Consensus       149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a  228 (264)
T KOG2361|consen  149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKA  228 (264)
T ss_pred             EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhc
Confidence            9999998875  335789999999999999999998876221110      1111 112233556899999999999999


Q ss_pred             CCcEEEEE
Q 019957          313 GLTNYTSK  320 (333)
Q Consensus       313 Gf~~v~~~  320 (333)
                      ||..++..
T Consensus       229 gf~~~~~~  236 (264)
T KOG2361|consen  229 GFEEVQLE  236 (264)
T ss_pred             ccchhccc
Confidence            99887643

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.57  E-value=8.1e-14  Score=116.16  Aligned_cols=118  Identities=21%  Similarity=0.367  Sum_probs=95.4

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      -.+.+.+.+...+..+|||+|||+|.++..+++.++..+++++|+++.+++.++++++.+++   .++.++..|+.+.. 
T Consensus        19 ~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~---~~v~~~~~d~~~~~-   94 (170)
T PF05175_consen   19 GTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL---ENVEVVQSDLFEAL-   94 (170)
T ss_dssp             HHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC---TTEEEEESSTTTTC-
T ss_pred             HHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc---cccccccccccccc-
Confidence            44567777766678899999999999999999999877799999999999999999999874   33999999986532 


Q ss_pred             CCCCcceEEeccccccCCC-----hHHHHHHHHHhccCCcEEEEEEe
Q 019957          234 ASGFVDAVHAGAALHCWPS-----PSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d-----~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      .+++||+|+++--++.-.+     ...++++..++|||||.+++...
T Consensus        95 ~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~  141 (170)
T PF05175_consen   95 PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN  141 (170)
T ss_dssp             CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence            3689999999876554433     36789999999999999988654

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PTZ00146 fibrillarin; Provisional

Probab=99.56  E-value=2.7e-13  Score=120.31  Aligned_cols=143  Identities=19%  Similarity=0.213  Sum_probs=97.6

Q ss_pred             hcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC---CCCCCC
Q 019957          162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PFASGF  237 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l---p~~~~~  237 (333)
                      +...++.+|||+|||+|.++..+++. ++...|+++|+++.+++...+....     ..++.++.+|+...   ....++
T Consensus       128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----r~NI~~I~~Da~~p~~y~~~~~~  202 (293)
T PTZ00146        128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----RPNIVPIIEDARYPQKYRMLVPM  202 (293)
T ss_pred             eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCCEEEECCccChhhhhcccCC
Confidence            34567889999999999999999987 3456899999998766544444332     45788999998542   222458


Q ss_pred             cceEEeccccccCCCh-HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcE
Q 019957          238 VDAVHAGAALHCWPSP-SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN  316 (333)
Q Consensus       238 fD~V~~~~vl~h~~d~-~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~  316 (333)
                      ||+|++...  . +|. ..++.++.++|||||.|++......-...           +.....|+ +++ ++|+++||+.
T Consensus       203 vDvV~~Dva--~-pdq~~il~~na~r~LKpGG~~vI~ika~~id~g-----------~~pe~~f~-~ev-~~L~~~GF~~  266 (293)
T PTZ00146        203 VDVIFADVA--Q-PDQARIVALNAQYFLKNGGHFIISIKANCIDST-----------AKPEVVFA-SEV-QKLKKEGLKP  266 (293)
T ss_pred             CCEEEEeCC--C-cchHHHHHHHHHHhccCCCEEEEEEeccccccC-----------CCHHHHHH-HHH-HHHHHcCCce
Confidence            999998764  2 343 45667899999999999995322210000           00111122 344 8899999999


Q ss_pred             EEEEEeCeE
Q 019957          317 YTSKVQQSF  325 (333)
Q Consensus       317 v~~~~~~~~  325 (333)
                      ++......|
T Consensus       267 ~e~v~L~Py  275 (293)
T PTZ00146        267 KEQLTLEPF  275 (293)
T ss_pred             EEEEecCCc
Confidence            887765555

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.56  E-value=2e-13  Score=121.06  Aligned_cols=139  Identities=20%  Similarity=0.275  Sum_probs=105.8

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      .+..+.+.+.. .+.+|||+|||+|.++..++...+..+++|+|+++.+++.+++++...+   ..++.++.+|+.+ ++
T Consensus        76 l~~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~~~~~~d~~~-~~  150 (251)
T TIGR03534        76 LVEAALERLKK-GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG---LDNVTFLQSDWFE-PL  150 (251)
T ss_pred             HHHHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC---CCeEEEEECchhc-cC
Confidence            34444554442 3468999999999999999998777799999999999999999988776   3479999999866 44


Q ss_pred             CCCCcceEEeccccc------cCC------C--------------hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhH
Q 019957          234 ASGFVDAVHAGAALH------CWP------S--------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR  287 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~------h~~------d--------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~  287 (333)
                      .+++||+|+++-...      ++.      +              ...+++++.++|+|||.+++...            
T Consensus       151 ~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~------------  218 (251)
T TIGR03534       151 PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG------------  218 (251)
T ss_pred             cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC------------
Confidence            578999999853221      111      0              13568899999999999988541            


Q ss_pred             HHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957          288 VLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       288 ~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                                 +...+++.++++++||+.++..
T Consensus       219 -----------~~~~~~~~~~l~~~gf~~v~~~  240 (251)
T TIGR03534       219 -----------YDQGEAVRALFEAAGFADVETR  240 (251)
T ss_pred             -----------ccHHHHHHHHHHhCCCCceEEE
Confidence                       1234678999999999887753

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.56  E-value=5.4e-14  Score=129.65  Aligned_cols=117  Identities=20%  Similarity=0.241  Sum_probs=95.4

Q ss_pred             HHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC--CCCC
Q 019957          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFAS  235 (333)
Q Consensus       158 ~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~  235 (333)
                      +...+....+..+||||||+|.++..+++..|+..++|+|+++.+++.+.+++...+   ..++.++++|+..+  .+++
T Consensus       114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g---L~NV~~i~~DA~~ll~~~~~  190 (390)
T PRK14121        114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN---LKNLLIINYDARLLLELLPS  190 (390)
T ss_pred             HHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHhhhhCCC
Confidence            344444455669999999999999999999988899999999999999999988877   56899999999654  4678


Q ss_pred             CCcceEEeccccccCCCh------HHHHHHHHHhccCCcEEEEEEecc
Q 019957          236 GFVDAVHAGAALHCWPSP------SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~------~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      +++|.|++.....+....      ..+++++.|+|+|||.+.+.|-..
T Consensus       191 ~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~  238 (390)
T PRK14121        191 NSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE  238 (390)
T ss_pred             CceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence            999999975433322211      578999999999999999988654

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.56  E-value=1.1e-13  Score=124.06  Aligned_cols=136  Identities=21%  Similarity=0.317  Sum_probs=104.9

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++.+|||+|||+|-++...++.| ..+|+|+|+++.+++.|++++..+++  ..++.+.  ...+.+  .++||+|+++
T Consensus       160 ~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~--~~~~~v~--~~~~~~--~~~~dlvvAN  232 (295)
T PF06325_consen  160 KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGV--EDRIEVS--LSEDLV--EGKFDLVVAN  232 (295)
T ss_dssp             STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT---TTCEEES--CTSCTC--CS-EEEEEEE
T ss_pred             cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCC--CeeEEEE--Eecccc--cccCCEEEEC
Confidence            457799999999999999999987 45899999999999999999999986  4455442  222332  4899999986


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEEeCe
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQS  324 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~~~~  324 (333)
                      -..+-   ...++..+.++|+|||.|+++-....                      ..+++.+.+++ ||++++....+.
T Consensus       233 I~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~~----------------------~~~~v~~a~~~-g~~~~~~~~~~~  286 (295)
T PF06325_consen  233 ILADV---LLELAPDIASLLKPGGYLILSGILEE----------------------QEDEVIEAYKQ-GFELVEEREEGE  286 (295)
T ss_dssp             S-HHH---HHHHHHHCHHHEEEEEEEEEEEEEGG----------------------GHHHHHHHHHT-TEEEEEEEEETT
T ss_pred             CCHHH---HHHHHHHHHHhhCCCCEEEEccccHH----------------------HHHHHHHHHHC-CCEEEEEEEECC
Confidence            54322   24567778899999999999876542                      24678888877 999999999999


Q ss_pred             EEEEEEeCC
Q 019957          325 FIMFAAQKP  333 (333)
Q Consensus       325 ~~~~~a~kp  333 (333)
                      |..+.++|.
T Consensus       287 W~~l~~~Kk  295 (295)
T PF06325_consen  287 WVALVFKKK  295 (295)
T ss_dssp             EEEEEEEE-
T ss_pred             EEEEEEEeC
Confidence            999998874

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.56  E-value=2.5e-13  Score=125.85  Aligned_cols=121  Identities=13%  Similarity=0.116  Sum_probs=95.3

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (333)
                      .-.+.+.+.++...+++|||+|||+|.++..+++.+|..+|+++|+|+.+++.++++++.++.....++.++.+|.... 
T Consensus       215 ~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-  293 (378)
T PRK15001        215 IGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-  293 (378)
T ss_pred             hHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-
Confidence            3346677777765567999999999999999999998889999999999999999998776531123688888887542 


Q ss_pred             CCCCCcceEEeccccccC---CC--hHHHHHHHHHhccCCcEEEEEE
Q 019957          233 FASGFVDAVHAGAALHCW---PS--PSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~---~d--~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      +..++||+|+++-.+|..   .+  ..++++++.++|+|||.|+++.
T Consensus       294 ~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        294 VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            234689999997665432   22  2478999999999999999985

>PRK14967 putative methyltransferase; Provisional

Probab=99.56  E-value=3.8e-13  Score=117.13  Aligned_cols=161  Identities=18%  Similarity=0.159  Sum_probs=110.5

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (333)
                      ..++.+|||+|||+|.++..+++.+ ..+++++|+++.+++.+++++...+    .++.++.+|+... +.+++||+|++
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~----~~~~~~~~d~~~~-~~~~~fD~Vi~  107 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAG----VDVDVRRGDWARA-VEFRPFDVVVS  107 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhC----CeeEEEECchhhh-ccCCCeeEEEE
Confidence            4456799999999999999988864 3589999999999999999887654    2578888998653 34678999999


Q ss_pred             ccccccCCC---------------------hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH-h-----hhcc
Q 019957          244 GAALHCWPS---------------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-R-----ILQN  296 (333)
Q Consensus       244 ~~vl~h~~d---------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~-----~~~~  296 (333)
                      +--..+...                     ...+++++.++|||||++++....... .. .....+.. .     ...+
T Consensus       108 npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~-~~-~~~~~l~~~g~~~~~~~~~  185 (223)
T PRK14967        108 NPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSG-VE-RTLTRLSEAGLDAEVVASQ  185 (223)
T ss_pred             CCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccC-HH-HHHHHHHHCCCCeEEEEee
Confidence            743221111                     245788899999999999986544311 11 11222211 0     0123


Q ss_pred             CCCCCHHH--HHHHHHhCCCcEEEEEEeCeEEEEEEeCC
Q 019957          297 YNYLTEEE--IEDLCTSCGLTNYTSKVQQSFIMFAAQKP  333 (333)
Q Consensus       297 ~~~~t~~~--l~~ll~~aGf~~v~~~~~~~~~~~~a~kp  333 (333)
                      ...|....  ...++++.||.... .+....+++.|+||
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  223 (223)
T PRK14967        186 WIPFGPVLRARAAWLERRGLLPPG-QREEELVVIRADKP  223 (223)
T ss_pred             ccCccHHHHHHHHHHHHcCCCCCC-CceEEEEEEEeecC
Confidence            33344433  44788999998553 55556788899998

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.55  E-value=1.1e-13  Score=119.85  Aligned_cols=112  Identities=16%  Similarity=0.124  Sum_probs=92.5

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (333)
                      ....+.+.+...++.+|||||||+|.++..+++... ..+|+++|+++.+++.|++++...+   ..++.++.+|.....
T Consensus        65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g---~~~v~~~~~d~~~~~  141 (215)
T TIGR00080        65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG---LDNVIVIVGDGTQGW  141 (215)
T ss_pred             HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCeEEEECCcccCC
Confidence            446677777778889999999999999999988753 3569999999999999999998876   467999999997654


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      ...++||+|++.....++      ...+.+.|||||++++..
T Consensus       142 ~~~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       142 EPLAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPV  177 (215)
T ss_pred             cccCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence            445689999998776655      356788999999998865

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.55  E-value=1.7e-13  Score=126.22  Aligned_cols=137  Identities=20%  Similarity=0.244  Sum_probs=107.3

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ......+.......++.+|||+|||+|.++..++..+.  .++|+|+++.+++.++++++..++   .++.++.+|+.++
T Consensus       168 ~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~g~---~~i~~~~~D~~~l  242 (329)
T TIGR01177       168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHYGI---EDFFVKRGDATKL  242 (329)
T ss_pred             HHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHhCC---CCCeEEecchhcC
Confidence            33445555555666788999999999999988777654  999999999999999999988874   4588999999999


Q ss_pred             CCCCCCcceEEeccccc-------c-CCC-hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCH
Q 019957          232 PFASGFVDAVHAGAALH-------C-WPS-PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTE  302 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~-------h-~~d-~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  302 (333)
                      |+.+++||+|++.--..       + ..+ ...+++++.++|||||++++..+..                         
T Consensus       243 ~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~-------------------------  297 (329)
T TIGR01177       243 PLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR-------------------------  297 (329)
T ss_pred             CcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC-------------------------
Confidence            88788999999953211       1 111 3678999999999999999877543                         


Q ss_pred             HHHHHHHHhCCCcEEEE
Q 019957          303 EEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       303 ~~l~~ll~~aGf~~v~~  319 (333)
                      .++..+++++|| ++..
T Consensus       298 ~~~~~~~~~~g~-i~~~  313 (329)
T TIGR01177       298 IDLESLAEDAFR-VVKR  313 (329)
T ss_pred             CCHHHHHhhcCc-chhe
Confidence            255678999999 6654

This family is found exclusively in the Archaea.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.55  E-value=5.7e-13  Score=122.60  Aligned_cols=116  Identities=17%  Similarity=0.218  Sum_probs=94.1

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      -.+.+.+.+.....++|||+|||+|.++..+++.++..+++++|+|+.+++.++++++.+++    ...++.+|....  
T Consensus       184 gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l----~~~~~~~D~~~~--  257 (342)
T PRK09489        184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL----EGEVFASNVFSD--  257 (342)
T ss_pred             HHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCEEEEcccccc--
Confidence            34566666665556689999999999999999998878999999999999999999888753    356777777542  


Q ss_pred             CCCCcceEEeccccccCC-----ChHHHHHHHHHhccCCcEEEEEEe
Q 019957          234 ASGFVDAVHAGAALHCWP-----SPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~-----d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      .+++||+|+++-.+|+..     ....+++++.++|||||.++++..
T Consensus       258 ~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan  304 (342)
T PRK09489        258 IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (342)
T ss_pred             cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence            257899999998887632     346889999999999999998764

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.54  E-value=1.8e-13  Score=123.68  Aligned_cols=130  Identities=18%  Similarity=0.259  Sum_probs=100.0

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.++++...+++  ...+.+...+...  ..+++||+|+++
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~--~~~~~~~~~~~~~--~~~~~fDlVvan  232 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQV--SDRLQVKLIYLEQ--PIEGKADVIVAN  232 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCC--CcceEEEeccccc--ccCCCceEEEEe
Confidence            357899999999999998888765 45899999999999999999887764  4456666665333  235789999997


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEEeCe
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQS  324 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~~~~  324 (333)
                      ...++   ...++.++.++|||||.++++.....                      ..+++.+.+++. |++++....+.
T Consensus       233 ~~~~~---l~~ll~~~~~~LkpgG~li~sgi~~~----------------------~~~~v~~~~~~~-f~~~~~~~~~~  286 (288)
T TIGR00406       233 ILAEV---IKELYPQFSRLVKPGGWLILSGILET----------------------QAQSVCDAYEQG-FTVVEIRQREE  286 (288)
T ss_pred             cCHHH---HHHHHHHHHHHcCCCcEEEEEeCcHh----------------------HHHHHHHHHHcc-CceeeEeccCC
Confidence            65443   35788999999999999999774321                      235777888776 98888666554


Q ss_pred             E
Q 019957          325 F  325 (333)
Q Consensus       325 ~  325 (333)
                      |
T Consensus       287 W  287 (288)
T TIGR00406       287 W  287 (288)
T ss_pred             C
Confidence            4

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.54  E-value=6.7e-13  Score=113.27  Aligned_cols=114  Identities=14%  Similarity=0.152  Sum_probs=90.7

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFA  234 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~  234 (333)
                      ..+...+...++.+|||+|||+|.++..+++..+..+++++|+++.+++.++++++..+   ..++.++.+|+.+ ++..
T Consensus        30 ~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~---~~~v~~~~~d~~~~~~~~  106 (196)
T PRK07402         30 LLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG---VKNVEVIEGSAPECLAQL  106 (196)
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCCeEEEECchHHHHhhC
Confidence            45677777677889999999999999999877666799999999999999999988766   4578999999854 2222


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ...+|.++...    ..+...+++++.++|+|||.+++..+.
T Consensus       107 ~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~  144 (196)
T PRK07402        107 APAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS  144 (196)
T ss_pred             CCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence            23467766532    235578899999999999999998754

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.53  E-value=1.1e-12  Score=118.05  Aligned_cols=130  Identities=18%  Similarity=0.176  Sum_probs=99.8

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|++++...++  ..++.++.+|+.+. +++++||+|+++
T Consensus       120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~--~~~i~~~~~D~~~~-~~~~~fD~Iv~N  196 (284)
T TIGR03533       120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL--EDRVTLIQSDLFAA-LPGRKYDLIVSN  196 (284)
T ss_pred             CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECchhhc-cCCCCccEEEEC
Confidence            345689999999999999999988778999999999999999999988764  45799999998542 235689999985


Q ss_pred             c------ccccC-----CCh--------------HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCC
Q 019957          245 A------ALHCW-----PSP--------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNY  299 (333)
Q Consensus       245 ~------vl~h~-----~d~--------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (333)
                      -      .+.++     .+|              ..+++++.++|+|||++++....                       
T Consensus       197 PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-----------------------  253 (284)
T TIGR03533       197 PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-----------------------  253 (284)
T ss_pred             CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-----------------------
Confidence            1      11111     112              45688889999999999886521                       


Q ss_pred             CCHHHHHHHHHhCCCcEEEEEE
Q 019957          300 LTEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       300 ~t~~~l~~ll~~aGf~~v~~~~  321 (333)
                       +.+.++.++.++||.......
T Consensus       254 -~~~~v~~~~~~~~~~~~~~~~  274 (284)
T TIGR03533       254 -SMEALEEAYPDVPFTWLEFEN  274 (284)
T ss_pred             -CHHHHHHHHHhCCCceeeecC
Confidence             335788888889987766433

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.52  E-value=9.2e-13  Score=118.85  Aligned_cols=126  Identities=14%  Similarity=0.223  Sum_probs=97.5

Q ss_pred             CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec---
Q 019957          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG---  244 (333)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~---  244 (333)
                      .+|||+|||+|.++..++...+..+++|+|+|+.+++.|++++...++  ..++.++.+|+.+ ++.+.+||+|+++   
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~--~~~v~~~~~d~~~-~~~~~~fDlIvsNPPy  192 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL--EHRVEFIQSNLFE-PLAGQKIDIIVSNPPY  192 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECchhc-cCcCCCccEEEECCCC
Confidence            689999999999999999988778999999999999999999887764  3459999999865 3334589999985   


Q ss_pred             ----------cccccCC------------ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCH
Q 019957          245 ----------AALHCWP------------SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTE  302 (333)
Q Consensus       245 ----------~vl~h~~------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  302 (333)
                                .++.|-+            ....+++++.++|+|||++++.....                       ..
T Consensus       193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~-----------------------q~  249 (284)
T TIGR00536       193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW-----------------------QQ  249 (284)
T ss_pred             CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-----------------------HH
Confidence                      2333332            23467888999999999998866322                       23


Q ss_pred             HHHHHHHH-hCCCcEEEE
Q 019957          303 EEIEDLCT-SCGLTNYTS  319 (333)
Q Consensus       303 ~~l~~ll~-~aGf~~v~~  319 (333)
                      +.+.+++. ..||..++.
T Consensus       250 ~~~~~~~~~~~~~~~~~~  267 (284)
T TIGR00536       250 KSLKELLRIKFTWYDVEN  267 (284)
T ss_pred             HHHHHHHHhcCCCceeEE
Confidence            46677777 468876654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.51  E-value=1.2e-13  Score=107.75  Aligned_cols=107  Identities=21%  Similarity=0.336  Sum_probs=88.7

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--CCCCCcceEEec
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAG  244 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~  244 (333)
                      |.+|||+|||+|.++..+.+.+ ..+++|+|+++..++.++.++...++  ..+++++++|+.+..  +.+++||+|+++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n   77 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGL--DDRVEVIVGDARDLPEPLPDGKFDLIVTN   77 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTT--TTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccC--CceEEEEECchhhchhhccCceeEEEEEC
Confidence            4589999999999999999998 66999999999999999999988764  568999999997765  678999999997


Q ss_pred             cccccCC--------ChHHHHHHHHHhccCCcEEEEEEec
Q 019957          245 AALHCWP--------SPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       245 ~vl~h~~--------d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      -......        .-..+++++.++|||||.+++.+++
T Consensus        78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~  117 (117)
T PF13659_consen   78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA  117 (117)
T ss_dssp             -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            6654321        1247899999999999999998763

...

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.50  E-value=3.2e-13  Score=116.18  Aligned_cols=99  Identities=22%  Similarity=0.247  Sum_probs=79.3

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--------CCC
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FAS  235 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~~  235 (333)
                      .++.+|||||||+|.++..+++.. +...|+|+|+++ +          .+   .+++.++++|+.+.+        +.+
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~---~~~v~~i~~D~~~~~~~~~i~~~~~~  115 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DP---IVGVDFLQGDFRDELVLKALLERVGD  115 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cC---CCCcEEEecCCCChHHHHHHHHHhCC
Confidence            457799999999999999998874 446899999988 1          01   457899999998853        567


Q ss_pred             CCcceEEeccccccCCCh-----------HHHHHHHHHhccCCcEEEEEEecc
Q 019957          236 GFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~-----------~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      ++||+|++..+.++..++           ..+|+++.++|||||.|++.++..
T Consensus       116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~  168 (209)
T PRK11188        116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG  168 (209)
T ss_pred             CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence            899999998776665443           357899999999999999977543

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.50  E-value=1.5e-12  Score=118.33  Aligned_cols=125  Identities=18%  Similarity=0.175  Sum_probs=96.5

Q ss_pred             CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc--
Q 019957          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA--  245 (333)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~--  245 (333)
                      .+|||+|||+|.++..++...+..+++++|+|+.+++.|++++...++  ..++.++.+|+.+. +++++||+|+++-  
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l--~~~i~~~~~D~~~~-l~~~~fDlIvsNPPy  211 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL--EDRVTLIESDLFAA-LPGRRYDLIVSNPPY  211 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC--CCcEEEEECchhhh-CCCCCccEEEECCCC
Confidence            689999999999999999988778999999999999999999988764  45799999998542 2356899999861  


Q ss_pred             ----c-------cccCCC------------hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCH
Q 019957          246 ----A-------LHCWPS------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTE  302 (333)
Q Consensus       246 ----v-------l~h~~d------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  302 (333)
                          .       +.|.+.            ...+++++.++|+|||.+++....                        +.
T Consensus       212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~------------------------~~  267 (307)
T PRK11805        212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN------------------------SR  267 (307)
T ss_pred             CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc------------------------CH
Confidence                1       112221            146789999999999999985421                        23


Q ss_pred             HHHHHHHHhCCCcEEEE
Q 019957          303 EEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       303 ~~l~~ll~~aGf~~v~~  319 (333)
                      +++..++.+.||.....
T Consensus       268 ~~~~~~~~~~~~~~~~~  284 (307)
T PRK11805        268 VHLEEAYPDVPFTWLEF  284 (307)
T ss_pred             HHHHHHHhhCCCEEEEe
Confidence            45777788888876653

>TIGR03438 probable methyltransferase

Probab=99.50  E-value=7.1e-13  Score=120.48  Aligned_cols=107  Identities=18%  Similarity=0.229  Sum_probs=81.8

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CCCCCC----Ccc
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASG----FVD  239 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~----~fD  239 (333)
                      ++.+|||+|||+|..+..+.+..+ ..+|+++|+|+.|++.+++++.....  ..++.++++|+.+ +++...    ...
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p--~~~v~~i~gD~~~~~~~~~~~~~~~~~  140 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP--QLEVHGICADFTQPLALPPEPAAGRRL  140 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC--CceEEEEEEcccchhhhhcccccCCeE
Confidence            457899999999999999998864 35899999999999999998765321  3356778999876 333322    233


Q ss_pred             eEEeccccccCCC--hHHHHHHHHHhccCCcEEEEEE
Q 019957          240 AVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       240 ~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      ++++..+++|++.  ...+|++++++|+|||.|++..
T Consensus       141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~  177 (301)
T TIGR03438       141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV  177 (301)
T ss_pred             EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            4555567888763  3578999999999999998743

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.49  E-value=8.5e-13  Score=114.08  Aligned_cols=113  Identities=17%  Similarity=0.129  Sum_probs=91.7

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ......+.+.+...++.+|||+|||+|.++..+++...  +++++|+++.+++.+++++...+   ..++.++.+|....
T Consensus        64 p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~  138 (212)
T PRK00312         64 PYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLG---LHNVSVRHGDGWKG  138 (212)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCC---CCceEEEECCcccC
Confidence            34456667777777888999999999999988887754  89999999999999999998876   45699999998653


Q ss_pred             CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ....++||+|++...++++      .+.+.+.|+|||++++...
T Consensus       139 ~~~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        139 WPAYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             CCcCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence            2234789999998877665      3567889999999998765

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.47  E-value=4.1e-13  Score=111.84  Aligned_cols=114  Identities=27%  Similarity=0.373  Sum_probs=89.4

Q ss_pred             HHHHHHHHHhhcccC--CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC-
Q 019957          152 DEEFKMAQEYFKSAQ--GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-  228 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-  228 (333)
                      .++.+..++++....  ..-|||||||+|..+..+...+.  ..+|+|+|+.|++.|.+..        -.-+++.+|+ 
T Consensus        34 ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh--~wiGvDiSpsML~~a~~~e--------~egdlil~DMG  103 (270)
T KOG1541|consen   34 AEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH--QWIGVDISPSMLEQAVERE--------LEGDLILCDMG  103 (270)
T ss_pred             HHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc--eEEeecCCHHHHHHHHHhh--------hhcCeeeeecC
Confidence            334455555555443  66899999999999999999875  8999999999999999732        1235777888 


Q ss_pred             CCCCCCCCCcceEEeccccccCC-------ChH----HHHHHHHHhccCCcEEEEEEe
Q 019957          229 CRLPFASGFVDAVHAGAALHCWP-------SPS----NAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~-------d~~----~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      +.+||..++||.+++...++++-       +|.    .++..++.+|++|++.++...
T Consensus       104 ~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY  161 (270)
T KOG1541|consen  104 EGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY  161 (270)
T ss_pred             CCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence            66899999999999988776652       333    567889999999999998764

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.46  E-value=6.5e-12  Score=116.66  Aligned_cols=127  Identities=13%  Similarity=0.121  Sum_probs=96.2

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC-CCCCcceEEec
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHAG  244 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~V~~~  244 (333)
                      ++.+|||+|||+|.++..++...+..+++++|+|+.+++.+++++...+    .++.++++|+.+..+ ..++||+|+++
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g----~rV~fi~gDl~e~~l~~~~~FDLIVSN  326 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG----ARVEFAHGSWFDTDMPSEGKWDIIVSN  326 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEcchhccccccCCCccEEEEC
Confidence            3569999999999999999988777799999999999999999988754    379999999865432 24589999995


Q ss_pred             cccc-----cC----------------CC----hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCC
Q 019957          245 AALH-----CW----------------PS----PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNY  299 (333)
Q Consensus       245 ~vl~-----h~----------------~d----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (333)
                      --.-     +.                .|    ...+++.+.+.|+|||.+++....                       
T Consensus       327 PPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~-----------------------  383 (423)
T PRK14966        327 PPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF-----------------------  383 (423)
T ss_pred             CCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-----------------------
Confidence            3210     00                01    125667777899999998875421                       


Q ss_pred             CCHHHHHHHHHhCCCcEEEE
Q 019957          300 LTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       300 ~t~~~l~~ll~~aGf~~v~~  319 (333)
                      -..+.+.+++++.||..+++
T Consensus       384 ~Q~e~V~~ll~~~Gf~~v~v  403 (423)
T PRK14966        384 DQGAAVRGVLAENGFSGVET  403 (423)
T ss_pred             cHHHHHHHHHHHCCCcEEEE
Confidence            12468889999999987664

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.46  E-value=4.6e-13  Score=112.89  Aligned_cols=149  Identities=15%  Similarity=0.160  Sum_probs=105.3

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (333)
                      ...+.||.|+|.|+.+..+.... ..+|..+|+.+..++.|++.+...+   .....+++..++++....++||+|++-+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~---~~v~~~~~~gLQ~f~P~~~~YDlIW~QW  130 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDN---PRVGEFYCVGLQDFTPEEGKYDLIWIQW  130 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGG---CCEEEEEES-GGG----TT-EEEEEEES
T ss_pred             CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccC---CCcceEEecCHhhccCCCCcEeEEEehH
Confidence            35689999999999998776553 3499999999999999998766532   3446788888888765567999999999


Q ss_pred             ccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEEeC
Q 019957          246 ALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQ  323 (333)
Q Consensus       246 vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~~~  323 (333)
                      ++.|++|.  ..+|+.+...|+|+|++++-+........ .    +  ......-..+.+.++++++++|+++++...+.
T Consensus       131 ~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~-~----~--D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~  203 (218)
T PF05891_consen  131 CLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFD-E----F--DEEDSSVTRSDEHFRELFKQAGLRLVKEEKQK  203 (218)
T ss_dssp             -GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEE-E----E--ETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-T
T ss_pred             hhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCc-c----c--CCccCeeecCHHHHHHHHHHcCCEEEEecccc
Confidence            99999876  48999999999999999998876542211 0    1  11123334578999999999999999987766


Q ss_pred             eE
Q 019957          324 SF  325 (333)
Q Consensus       324 ~~  325 (333)
                      .|
T Consensus       204 ~f  205 (218)
T PF05891_consen  204 GF  205 (218)
T ss_dssp             T-
T ss_pred             CC
Confidence            65

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=2.1e-12  Score=110.85  Aligned_cols=117  Identities=21%  Similarity=0.263  Sum_probs=102.2

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      .-..+|...+...++.+|||.|.|+|.++..|+.. ++..+|+.+|+.++.++.|+++++..++  ..++++..+|+.+.
T Consensus        81 KD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l--~d~v~~~~~Dv~~~  158 (256)
T COG2519          81 KDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL--GDRVTLKLGDVREG  158 (256)
T ss_pred             CCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc--ccceEEEecccccc
Confidence            34467888888899999999999999999999974 6778999999999999999999999886  56699999999876


Q ss_pred             CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      -+.+ .||+|+..     +++|..++..+.++|||||.+++..|+.
T Consensus       159 ~~~~-~vDav~LD-----mp~PW~~le~~~~~Lkpgg~~~~y~P~v  198 (256)
T COG2519         159 IDEE-DVDAVFLD-----LPDPWNVLEHVSDALKPGGVVVVYSPTV  198 (256)
T ss_pred             cccc-ccCEEEEc-----CCChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence            5544 89999864     5899999999999999999999988764

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.45  E-value=8.4e-12  Score=112.18  Aligned_cols=140  Identities=19%  Similarity=0.211  Sum_probs=103.0

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (333)
                      ..++.+...+...++.+|||+|||+|.++..++...+..+++|+|+++.+++.+++++. .+.  ..++.++.+|+... 
T Consensus        95 ~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~--~~~i~~~~~d~~~~-  170 (275)
T PRK09328         95 ELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL--GARVEFLQGDWFEP-  170 (275)
T ss_pred             HHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC--CCcEEEEEccccCc-
Confidence            33444444444556779999999999999999998877899999999999999999877 221  45799999998552 


Q ss_pred             CCCCCcceEEecccc------c--------cC------------CChHHHHHHHHHhccCCcEEEEEEecccCCCcchhh
Q 019957          233 FASGFVDAVHAGAAL------H--------CW------------PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG  286 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl------~--------h~------------~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~  286 (333)
                      +.+++||+|+++--.      +        |-            .....+++++.++|+|||.+++....          
T Consensus       171 ~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~----------  240 (275)
T PRK09328        171 LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY----------  240 (275)
T ss_pred             CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc----------
Confidence            235789999985211      1        11            11246788888999999999984411          


Q ss_pred             HHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957          287 RVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       287 ~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~  319 (333)
                                   ...+++..++++.||..++.
T Consensus       241 -------------~~~~~~~~~l~~~gf~~v~~  260 (275)
T PRK09328        241 -------------DQGEAVRALLAAAGFADVET  260 (275)
T ss_pred             -------------hHHHHHHHHHHhCCCceeEE
Confidence                         12356889999999987664

>PHA03411 putative methyltransferase; Provisional

Probab=99.45  E-value=3.3e-12  Score=112.16  Aligned_cols=143  Identities=13%  Similarity=0.103  Sum_probs=104.6

Q ss_pred             CCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc
Q 019957          147 GFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (333)
Q Consensus       147 ~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~  226 (333)
                      .+..+......+.  +......+|||+|||+|.++..+....+..+++|+|+++.+++.++++        .+++.++.+
T Consensus        47 ~FfTP~~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n--------~~~v~~v~~  116 (279)
T PHA03411         47 AFFTPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL--------LPEAEWITS  116 (279)
T ss_pred             eEcCCHHHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh--------CcCCEEEEC
Confidence            3455666654332  223345799999999999998887765456999999999999999875        346889999


Q ss_pred             cCCCCCCCCCCcceEEeccccccCCCh--------------------HHHHHHHHHhccCCcEEEEEEecccCCCcchhh
Q 019957          227 DVCRLPFASGFVDAVHAGAALHCWPSP--------------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG  286 (333)
Q Consensus       227 d~~~lp~~~~~fD~V~~~~vl~h~~d~--------------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~  286 (333)
                      |+..+.. +++||+|+++-.+.|.+..                    .++++....+|+|+|.+++.-...+     .  
T Consensus       117 D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~-----~--  188 (279)
T PHA03411        117 DVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP-----Y--  188 (279)
T ss_pred             chhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc-----c--
Confidence            9987653 4689999998888775321                    3456777889999997777632211     1  


Q ss_pred             HHHHHhhhccCCCCCHHHHHHHHHhCCCcE
Q 019957          287 RVLRERILQNYNYLTEEEIEDLCTSCGLTN  316 (333)
Q Consensus       287 ~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~  316 (333)
                               ...-++.++.+.+++++||..
T Consensus       189 ---------y~~sl~~~~y~~~l~~~g~~~  209 (279)
T PHA03411        189 ---------YDGTMKSNKYLKWSKQTGLVT  209 (279)
T ss_pred             ---------ccccCCHHHHHHHHHhcCcEe
Confidence                     112368899999999999964

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.45  E-value=2e-12  Score=111.58  Aligned_cols=145  Identities=15%  Similarity=0.171  Sum_probs=101.1

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (333)
                      ...++||||+|.|..+..++..+.  +|++.|.|+.|....+++          +.+++.  ..+..-.+.+||+|.|.+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k----------g~~vl~--~~~w~~~~~~fDvIscLN  159 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK----------GFTVLD--IDDWQQTDFKFDVISCLN  159 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC----------CCeEEe--hhhhhccCCceEEEeehh
Confidence            456899999999999999998876  899999999997666542          344443  222332356899999999


Q ss_pred             ccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhh-HHHHHhhhccCCCCC----HHHHHHHHHhCCCcEEEEE
Q 019957          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG-RVLRERILQNYNYLT----EEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~t----~~~l~~ll~~aGf~~v~~~  320 (333)
                      +|....+|..+|+.+++.|+|+|+++++...+..+....-. +.......-....-+    .+.+.+.++.+||+++. +
T Consensus       160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~-~  238 (265)
T PF05219_consen  160 VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVER-W  238 (265)
T ss_pred             hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEE-E
Confidence            99999999999999999999999999987655433332211 010000000001112    23455889999999988 5


Q ss_pred             EeCeE
Q 019957          321 VQQSF  325 (333)
Q Consensus       321 ~~~~~  325 (333)
                      ..-+|
T Consensus       239 tr~PY  243 (265)
T PF05219_consen  239 TRLPY  243 (265)
T ss_pred             eccCc
Confidence            55444

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.45  E-value=3.5e-12  Score=112.49  Aligned_cols=140  Identities=22%  Similarity=0.280  Sum_probs=104.3

Q ss_pred             HHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCC
Q 019957          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (333)
Q Consensus       158 ~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (333)
                      +.......+..+|||||+|+|.++..+.+++|+.+++.+|. |..++.+++         ..++.++.+|+. -+++.  
T Consensus        92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---------~~rv~~~~gd~f-~~~P~--  158 (241)
T PF00891_consen   92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---------ADRVEFVPGDFF-DPLPV--  158 (241)
T ss_dssp             HHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---------TTTEEEEES-TT-TCCSS--
T ss_pred             hhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---------ccccccccccHH-hhhcc--
Confidence            33444445567899999999999999999999999999997 888888887         468999999997 45544  


Q ss_pred             cceEEeccccccCCChH--HHHHHHHHhccCC--cEEEEEEecccCCCcchhhH---HHHH---hhhccCCCCCHHHHHH
Q 019957          238 VDAVHAGAALHCWPSPS--NAVAEISRILRSG--GVFVGTTFLRYTSSTSLTGR---VLRE---RILQNYNYLTEEEIED  307 (333)
Q Consensus       238 fD~V~~~~vl~h~~d~~--~~l~~~~r~Lkpg--G~l~i~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~t~~~l~~  307 (333)
                      +|+|++.++||+++|..  .+|+++++.|+||  |+|+|.++..+.........   .+..   -......-+|.+||+.
T Consensus       159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~  238 (241)
T PF00891_consen  159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEA  238 (241)
T ss_dssp             ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHH
T ss_pred             ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHH
Confidence            99999999999998764  7899999999999  99999998865333322122   1111   1112266788999998


Q ss_pred             HHH
Q 019957          308 LCT  310 (333)
Q Consensus       308 ll~  310 (333)
                      +++
T Consensus       239 ll~  241 (241)
T PF00891_consen  239 LLK  241 (241)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            874

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=1.2e-11  Score=109.31  Aligned_cols=120  Identities=16%  Similarity=0.266  Sum_probs=97.2

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      .+.-.+.+.+.++...+.+|||+|||.|.++..+++..|..+++-+|+|..+++.+++++..+++   .+..++..|..+
T Consensus       143 lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~---~~~~v~~s~~~~  219 (300)
T COG2813         143 LDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV---ENTEVWASNLYE  219 (300)
T ss_pred             cChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC---CccEEEEecccc
Confidence            34445778888887767799999999999999999999999999999999999999999998873   343566666644


Q ss_pred             CCCCCCCcceEEeccccccCCCh-----HHHHHHHHHhccCCcEEEEEEe
Q 019957          231 LPFASGFVDAVHAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~-----~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      -- .+ +||+|+|+--+|-=.+-     .+++++..+.|++||.|.++..
T Consensus       220 ~v-~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         220 PV-EG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             cc-cc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            32 23 99999998777643222     3789999999999999999774

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=2.2e-12  Score=108.37  Aligned_cols=112  Identities=17%  Similarity=0.146  Sum_probs=96.5

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (333)
                      ....++.+.+...++.+|||||||+|+.+..+++...  +|+.+|..+...+.|+++++..|   ..|+.++++|...-=
T Consensus        59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg---~~nV~v~~gDG~~G~  133 (209)
T COG2518          59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLG---YENVTVRHGDGSKGW  133 (209)
T ss_pred             HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcC---CCceEEEECCcccCC
Confidence            4567888899999999999999999999999999865  99999999999999999999988   667999999996532


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      -+...||.|+.......+|++      +.+.||+||++++-.-
T Consensus       134 ~~~aPyD~I~Vtaaa~~vP~~------Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         134 PEEAPYDRIIVTAAAPEVPEA------LLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCCCCcCEEEEeeccCCCCHH------HHHhcccCCEEEEEEc
Confidence            235789999999988877644      5677999999999765

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.44  E-value=4.9e-12  Score=109.51  Aligned_cols=138  Identities=13%  Similarity=0.197  Sum_probs=109.4

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--CC
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FA  234 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~  234 (333)
                      ++..+......++|||+|||+|..+..++++.+..+++|+|+.+.+.+.|+++++.+++  ..++.++++|+.++.  ..
T Consensus        35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l--~~ri~v~~~Di~~~~~~~~  112 (248)
T COG4123          35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL--EERIQVIEADIKEFLKALV  112 (248)
T ss_pred             HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc--hhceeEehhhHHHhhhccc
Confidence            34455555557899999999999999999997678999999999999999999998886  889999999998764  33


Q ss_pred             CCCcceEEeccccccC------------------CChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhcc
Q 019957          235 SGFVDAVHAGAALHCW------------------PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQN  296 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~------------------~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~  296 (333)
                      ..+||+|+|+=-..-.                  .+....++.+.++|||||.+.++-+..                   
T Consensus       113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e-------------------  173 (248)
T COG4123         113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE-------------------  173 (248)
T ss_pred             ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH-------------------
Confidence            4579999996332211                  123577899999999999998866422                   


Q ss_pred             CCCCCHHHHHHHHHhCCCcEEEE
Q 019957          297 YNYLTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       297 ~~~~t~~~l~~ll~~aGf~~v~~  319 (333)
                          ...++.+++.+.+|...+.
T Consensus       174 ----rl~ei~~~l~~~~~~~k~i  192 (248)
T COG4123         174 ----RLAEIIELLKSYNLEPKRI  192 (248)
T ss_pred             ----HHHHHHHHHHhcCCCceEE
Confidence                1257889999999987664

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.43  E-value=6.6e-12  Score=108.19  Aligned_cols=133  Identities=13%  Similarity=0.134  Sum_probs=99.6

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc---------CcCCCCCeEEEEccCCCCCCC-
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD---------NTILTSNLALVRADVCRLPFA-  234 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~---------~~~~~~~i~~~~~d~~~lp~~-  234 (333)
                      .++.+||+.|||.|..+.+|++.|.  +|+|+|+|+.+++.+.+.....         ......+++++++|+.+++.. 
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~  119 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA  119 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence            3567999999999999999999987  8999999999999886632100         000135799999999998632 


Q ss_pred             --CCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHH
Q 019957          235 --SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCT  310 (333)
Q Consensus       235 --~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~  310 (333)
                        .+.||+|+-...+.+++..  .+..+.+.++|+|||.+++.+......            ....-...+.++++.++.
T Consensus       120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~------------~~GPPf~v~~~e~~~lf~  187 (226)
T PRK13256        120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKK------------SQTPPYSVTQAELIKNFS  187 (226)
T ss_pred             cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCC------------CCCCCCcCCHHHHHHhcc
Confidence              2589999999999999644  478999999999999998887643210            001122356788888885


Q ss_pred             h
Q 019957          311 S  311 (333)
Q Consensus       311 ~  311 (333)
                      .
T Consensus       188 ~  188 (226)
T PRK13256        188 A  188 (226)
T ss_pred             C
Confidence            4

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.42  E-value=7.7e-12  Score=105.03  Aligned_cols=161  Identities=19%  Similarity=0.277  Sum_probs=119.5

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCe-EEEEccCCCC-
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVCRL-  231 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i-~~~~~d~~~l-  231 (333)
                      +.+.+.+++... +.+|||||+|||..+.++++..|..+..-.|+++..+...+......++   +++ .-+..|+... 
T Consensus        14 Il~vL~~~l~~~-~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~---~Nv~~P~~lDv~~~~   89 (204)
T PF06080_consen   14 ILEVLKQYLPDS-GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGL---PNVRPPLALDVSAPP   89 (204)
T ss_pred             HHHHHHHHhCcc-CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCC---cccCCCeEeecCCCC
Confidence            456667776543 2269999999999999999999988999999999887777777776653   222 2234455443 


Q ss_pred             -CC------CCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCC-----cchhhHHHHHhhhccC
Q 019957          232 -PF------ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSS-----TSLTGRVLRERILQNY  297 (333)
Q Consensus       232 -p~------~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~-----~~~~~~~~~~~~~~~~  297 (333)
                       +.      ..++||+|++.+++|-.+-.  ..+++.+.++|++||.|++..|......     +..+...++.+. ..+
T Consensus        90 w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rd-p~~  168 (204)
T PF06080_consen   90 WPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRD-PEW  168 (204)
T ss_pred             CccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCC-CCc
Confidence             22      24689999999999887644  5789999999999999999988765321     222333333333 457


Q ss_pred             CCCCHHHHHHHHHhCCCcEEEE
Q 019957          298 NYLTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       298 ~~~t~~~l~~ll~~aGf~~v~~  319 (333)
                      ...+.+++..+.+++|++.++.
T Consensus       169 GiRD~e~v~~lA~~~GL~l~~~  190 (204)
T PF06080_consen  169 GIRDIEDVEALAAAHGLELEED  190 (204)
T ss_pred             CccCHHHHHHHHHHCCCccCcc
Confidence            8889999999999999987764

The function of this family is unknown.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.42  E-value=1.4e-12  Score=111.58  Aligned_cols=115  Identities=17%  Similarity=0.180  Sum_probs=89.8

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      ......+.+.+...++.+|||||||+|+++..++.. ++...|+++|+++..++.|++++...+   ..++.++.+|...
T Consensus        58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~---~~nv~~~~gdg~~  134 (209)
T PF01135_consen   58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG---IDNVEVVVGDGSE  134 (209)
T ss_dssp             HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT---THSEEEEES-GGG
T ss_pred             HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc---cCceeEEEcchhh
Confidence            345577888888889999999999999999999987 445579999999999999999999887   5699999999865


Q ss_pred             CCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      .-.....||.|++......++      ..+.+.||+||++++-.-
T Consensus       135 g~~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  135 GWPEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             TTGGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred             ccccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEc
Confidence            433456899999998877553      336777999999998654

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=99.41  E-value=2.4e-12  Score=107.46  Aligned_cols=158  Identities=18%  Similarity=0.331  Sum_probs=102.3

Q ss_pred             cchhHHHHhhHHhhcccCCCCCcHHHHHHHHHhhcccC-CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 019957          129 PFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQ-GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCY  207 (333)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~  207 (333)
                      +.+-..|+.++++.....  |  ..-++.+.+++...+ ...|-|+|||.+.++..+....   .|.-+|+-..      
T Consensus        38 P~~F~~YH~Gfr~Qv~~W--P--~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~~---~V~SfDLva~------  104 (219)
T PF05148_consen   38 PELFDIYHEGFRQQVKKW--P--VNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNKH---KVHSFDLVAP------  104 (219)
T ss_dssp             HHHHHHHHHHHHHHHCTS--S--S-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S------
T ss_pred             HHHHHHHHHHHHHHHhcC--C--CCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccCc---eEEEeeccCC------
Confidence            444456888888766542  2  233455555665444 4689999999999997765332   7999998431      


Q ss_pred             HHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhH
Q 019957          208 DFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR  287 (333)
Q Consensus       208 ~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~  287 (333)
                                  +-.+..+|+..+|++++++|++++.-.|.- .|...+|+|+.|+||+||.|.|.+....         
T Consensus       105 ------------n~~Vtacdia~vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~SR---------  162 (219)
T PF05148_consen  105 ------------NPRVTACDIANVPLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKSR---------  162 (219)
T ss_dssp             ------------STTEEES-TTS-S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG---------
T ss_pred             ------------CCCEEEecCccCcCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEeccc---------
Confidence                        224778999999999999999998887765 5788899999999999999999996543         


Q ss_pred             HHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEE-eCeEEEEEEeC
Q 019957          288 VLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV-QQSFIMFAAQK  332 (333)
Q Consensus       288 ~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~-~~~~~~~~a~k  332 (333)
                                 +-+.+.+.+.+++.||+...... +.-|+++..+|
T Consensus       163 -----------f~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K  197 (219)
T PF05148_consen  163 -----------FENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK  197 (219)
T ss_dssp             ------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred             -----------CcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence                       22567889999999999988653 45556666554

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=99.40  E-value=1.2e-11  Score=108.00  Aligned_cols=161  Identities=12%  Similarity=0.155  Sum_probs=123.8

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---CCCCCcc
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVD  239 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD  239 (333)
                      ..+.+||||.||.|.+...+....+.  .++...|.|+..++..++.+++.|+  ..-+.|.++|+.+..   -.+-..+
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL--~~i~~f~~~dAfd~~~l~~l~p~P~  211 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL--EDIARFEQGDAFDRDSLAALDPAPT  211 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC--ccceEEEecCCCCHhHhhccCCCCC
Confidence            45678999999999998888888765  6899999999999999999999995  445599999987632   2244679


Q ss_pred             eEEeccccccCCChH---HHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhh-------ccCCCCCHHHHHHHH
Q 019957          240 AVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERIL-------QNYNYLTEEEIEDLC  309 (333)
Q Consensus       240 ~V~~~~vl~h~~d~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~t~~~l~~ll  309 (333)
                      +++.++++|.++|-.   ..|+-+.+.+.|||+++.+.-    +++|. .+.+.....       -.+...|..|+.+++
T Consensus       212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQ----PwHPQ-le~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv  286 (311)
T PF12147_consen  212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQ----PWHPQ-LEMIARVLTSHRDGKAWVMRRRSQAEMDQLV  286 (311)
T ss_pred             EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCC----CCCcc-hHHHHHHHhcccCCCceEEEecCHHHHHHHH
Confidence            999999999999854   568899999999999998652    12222 222222222       234578999999999


Q ss_pred             HhCCCcEEEE--EEeCeEEEEEEeC
Q 019957          310 TSCGLTNYTS--KVQQSFIMFAAQK  332 (333)
Q Consensus       310 ~~aGf~~v~~--~~~~~~~~~~a~k  332 (333)
                      +++||+.+..  ...+.|.+..|+|
T Consensus       287 ~~aGF~K~~q~ID~~GIFTVSlA~r  311 (311)
T PF12147_consen  287 EAAGFEKIDQRIDEWGIFTVSLARR  311 (311)
T ss_pred             HHcCCchhhheeccCCceEEEeecC
Confidence            9999987664  4567778777765

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.40  E-value=5e-12  Score=120.44  Aligned_cols=127  Identities=18%  Similarity=0.223  Sum_probs=99.3

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      .+.....+...+.+.++.+|||+|||+|..+..+++..+..+++++|+++.+++.++++++..|+  ...+.+..+|...
T Consensus       223 Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~--~~~v~~~~~d~~~  300 (426)
T TIGR00563       223 QDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL--TIKAETKDGDGRG  300 (426)
T ss_pred             ECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEecccccc
Confidence            34445666777788888999999999999999999875566999999999999999999998774  2234446677665


Q ss_pred             CCC--CCCCcceEEe------ccccccCCC----------------hHHHHHHHHHhccCCcEEEEEEecccC
Q 019957          231 LPF--ASGFVDAVHA------GAALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYT  279 (333)
Q Consensus       231 lp~--~~~~fD~V~~------~~vl~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~~~  279 (333)
                      .++  ..++||.|++      .+++.+.++                ..++|+++.++|||||.++++|.....
T Consensus       301 ~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~  373 (426)
T TIGR00563       301 PSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP  373 (426)
T ss_pred             ccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence            443  4678999985      356666555                257899999999999999999876643

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.40  E-value=1.3e-11  Score=107.71  Aligned_cols=140  Identities=19%  Similarity=0.296  Sum_probs=108.7

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (333)
                      ....+.+|...+...||.+|||.|.|+|.++..|++. +|.++|+.+|+.++.++.|+++++..++  ..++.+...|+.
T Consensus        25 YpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl--~~~v~~~~~Dv~  102 (247)
T PF08704_consen   25 YPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL--DDNVTVHHRDVC  102 (247)
T ss_dssp             -HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC--CTTEEEEES-GG
T ss_pred             eCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC--CCCceeEeccee
Confidence            3445578888889999999999999999999999975 7788999999999999999999999986  678999999996


Q ss_pred             CCCCC---CCCcceEEeccccccCCChHHHHHHHHHhc-cCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHH
Q 019957          230 RLPFA---SGFVDAVHAGAALHCWPSPSNAVAEISRIL-RSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEI  305 (333)
Q Consensus       230 ~lp~~---~~~fD~V~~~~vl~h~~d~~~~l~~~~r~L-kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l  305 (333)
                      +..|.   +..+|.|++.     +++|..++..+.++| |+||++.+-.|...         .             ....
T Consensus       103 ~~g~~~~~~~~~DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie---------Q-------------v~~~  155 (247)
T PF08704_consen  103 EEGFDEELESDFDAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPCIE---------Q-------------VQKT  155 (247)
T ss_dssp             CG--STT-TTSEEEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESSHH---------H-------------HHHH
T ss_pred             cccccccccCcccEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCCHH---------H-------------HHHH
Confidence            53332   3679998864     589999999999999 89999999876542         1             1345


Q ss_pred             HHHHHhCCCcEEEE
Q 019957          306 EDLCTSCGLTNYTS  319 (333)
Q Consensus       306 ~~ll~~aGf~~v~~  319 (333)
                      ...|++.||..++.
T Consensus       156 ~~~L~~~gf~~i~~  169 (247)
T PF08704_consen  156 VEALREHGFTDIET  169 (247)
T ss_dssp             HHHHHHTTEEEEEE
T ss_pred             HHHHHHCCCeeeEE
Confidence            57778899987764

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.39  E-value=1.5e-11  Score=119.10  Aligned_cols=127  Identities=13%  Similarity=0.124  Sum_probs=96.9

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc-
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA-  245 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~-  245 (333)
                      +.+|||+|||+|.++..++...+..+++++|+|+.+++.|++++...++  ..++.++.+|+... +..++||+|+++- 
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l--~~~v~~~~~D~~~~-~~~~~fDlIvsNPP  215 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV--TDRIQIIHSNWFEN-IEKQKFDFIVSNPP  215 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC--ccceeeeecchhhh-CcCCCccEEEECCC
Confidence            4689999999999999998887778999999999999999999887764  45789999997542 2356899999842 


Q ss_pred             -------------ccccCCC------------hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCC
Q 019957          246 -------------ALHCWPS------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYL  300 (333)
Q Consensus       246 -------------vl~h~~d------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (333)
                                   ++.|-+.            ...+++.+.++|+|||.+++....                       -
T Consensus       216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~-----------------------~  272 (506)
T PRK01544        216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF-----------------------K  272 (506)
T ss_pred             CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC-----------------------c
Confidence                         1222111            134677888999999999875311                       1


Q ss_pred             CHHHHHHHHHhCCCcEEEE
Q 019957          301 TEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       301 t~~~l~~ll~~aGf~~v~~  319 (333)
                      ..+.+..++.+.||..+++
T Consensus       273 q~~~v~~~~~~~g~~~~~~  291 (506)
T PRK01544        273 QEEAVTQIFLDHGYNIESV  291 (506)
T ss_pred             hHHHHHHHHHhcCCCceEE
Confidence            3457888999999987654

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.39  E-value=9e-12  Score=107.46  Aligned_cols=172  Identities=19%  Similarity=0.257  Sum_probs=110.0

Q ss_pred             HHhhHHhhcccCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh-c
Q 019957          135 YERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-D  213 (333)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-~  213 (333)
                      ++..|++.-.......+...+..+.+.+...++.+||..|||.|..+..|+++|.  +|+|+|+|+.+++.+.+.... .
T Consensus         6 W~~~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~~~~   83 (218)
T PF05724_consen    6 WEERWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENNLEP   83 (218)
T ss_dssp             HHHHHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCTTEE
T ss_pred             HHHHHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhccCC
Confidence            4445554432222222233333333335556677999999999999999999987  999999999999998543221 0


Q ss_pred             Cc--------CCCCCeEEEEccCCCCCCCC-CCcceEEeccccccCCC--hHHHHHHHHHhccCCcEEEEEEecccCCCc
Q 019957          214 NT--------ILTSNLALVRADVCRLPFAS-GFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTSST  282 (333)
Q Consensus       214 ~~--------~~~~~i~~~~~d~~~lp~~~-~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~  282 (333)
                      ..        ....+++++++|+..++... ++||+|+-...|.-++.  -.+..+.+.++|+|||.+++.+....... 
T Consensus        84 ~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~-  162 (218)
T PF05724_consen   84 TVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGE-  162 (218)
T ss_dssp             ECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSC-
T ss_pred             CcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcC-
Confidence            00        01346899999999876433 58999999888877753  35789999999999999666554422110 


Q ss_pred             chhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957          283 SLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                                ..+.-...+++++++++. .+|++....
T Consensus       163 ----------~~GPPf~v~~~ev~~l~~-~~f~i~~l~  189 (218)
T PF05724_consen  163 ----------MEGPPFSVTEEEVRELFG-PGFEIEELE  189 (218)
T ss_dssp             ----------SSSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred             ----------CCCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence                      002223468899999998 888876643

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.39  E-value=7.2e-12  Score=119.58  Aligned_cols=124  Identities=18%  Similarity=0.278  Sum_probs=99.7

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (333)
                      .+.....+...+.+.++.+|||+|||+|..+..+++.. ...+++++|+++.+++.++++++..|   ..++.++.+|+.
T Consensus       237 qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g---~~~v~~~~~D~~  313 (434)
T PRK14901        237 QDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG---LKSIKILAADSR  313 (434)
T ss_pred             ECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC---CCeEEEEeCChh
Confidence            34444566667777788999999999999999988873 34589999999999999999999887   457999999998


Q ss_pred             CCC----CCCCCcceEEec------cccccCCC----------------hHHHHHHHHHhccCCcEEEEEEecc
Q 019957          230 RLP----FASGFVDAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       230 ~lp----~~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      .++    +..++||.|++.      +++.+-++                ..++|.++.++|||||+|+.+|...
T Consensus       314 ~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi  387 (434)
T PRK14901        314 NLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL  387 (434)
T ss_pred             hcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            765    345789999963      45665554                3477999999999999999988544

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.38  E-value=7.7e-12  Score=113.82  Aligned_cols=112  Identities=13%  Similarity=0.117  Sum_probs=89.5

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (333)
                      ....+.+.+...++.+|||||||+|.++..+++... ...|+++|+++.+++.|+++++..+   ..++.++.+|+...+
T Consensus        68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g---~~nV~~i~gD~~~~~  144 (322)
T PRK13943         68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG---IENVIFVCGDGYYGV  144 (322)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCChhhcc
Confidence            445566666666788999999999999999988753 2479999999999999999988876   457899999987665


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      ...+.||+|++...++++      ...+.+.|+|||++++..
T Consensus       145 ~~~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        145 PEFAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             cccCCccEEEECCchHHh------HHHHHHhcCCCCEEEEEe
Confidence            445689999998766654      234678999999988854

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.37  E-value=3.9e-11  Score=106.12  Aligned_cols=132  Identities=20%  Similarity=0.211  Sum_probs=96.7

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-CC-CCCCcceEEec
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PF-ASGFVDAVHAG  244 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~-~~~~fD~V~~~  244 (333)
                      +.+|||+|||+|.++..+++..+..+++++|+|+.+++.+++++..++      +.++.+|+.+. +. ..++||+|+++
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~------~~~~~~D~~~~l~~~~~~~fDlVv~N  160 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG------GTVHEGDLYDALPTALRGRVDILAAN  160 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC------CEEEEeechhhcchhcCCCEeEEEEC
Confidence            458999999999999999987766799999999999999999887643      47888998652 21 13579999986


Q ss_pred             ccc------c--------cCC--------C----hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCC
Q 019957          245 AAL------H--------CWP--------S----PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYN  298 (333)
Q Consensus       245 ~vl------~--------h~~--------d----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (333)
                      --.      .        |-+        |    ...+++.+.++|||||.+++.....                     
T Consensus       161 PPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~---------------------  219 (251)
T TIGR03704       161 APYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER---------------------  219 (251)
T ss_pred             CCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc---------------------
Confidence            321      1        110        1    1366777889999999999865321                     


Q ss_pred             CCCHHHHHHHHHhCCCcEEEEEEeCeEEE
Q 019957          299 YLTEEEIEDLCTSCGLTNYTSKVQQSFIM  327 (333)
Q Consensus       299 ~~t~~~l~~ll~~aGf~~v~~~~~~~~~~  327 (333)
                        ..+++..++++.||+........-|.+
T Consensus       220 --~~~~v~~~l~~~g~~~~~~~~~~~~~~  246 (251)
T TIGR03704       220 --QAPLAVEAFARAGLIARVASSEELYAT  246 (251)
T ss_pred             --hHHHHHHHHHHCCCCceeeEcccccce
Confidence              235788899999998766555444533

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.37  E-value=7.7e-12  Score=94.02  Aligned_cols=101  Identities=26%  Similarity=0.381  Sum_probs=85.0

Q ss_pred             eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC-CCCCcceEEecccc
Q 019957          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHAGAAL  247 (333)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~V~~~~vl  247 (333)
                      +|||+|||.|.++..+.+ ....+++++|+++..+..+++.....+   ..++.++..|+.+... ..++||+|++..++
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~   76 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALL---ADNVEVLKGDAEELPPEADESFDVIISDPPL   76 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhccc---ccceEEEEcChhhhccccCCceEEEEEccce
Confidence            589999999999998888 345699999999999998885433322   5678999999987653 46789999999999


Q ss_pred             cc-CCChHHHHHHHHHhccCCcEEEEE
Q 019957          248 HC-WPSPSNAVAEISRILRSGGVFVGT  273 (333)
Q Consensus       248 ~h-~~d~~~~l~~~~r~LkpgG~l~i~  273 (333)
                      ++ ..+...+++.+.+.|+|||.+++.
T Consensus        77 ~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          77 HHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            99 778889999999999999999876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=99.34  E-value=2.5e-11  Score=103.58  Aligned_cols=156  Identities=19%  Similarity=0.272  Sum_probs=111.5

Q ss_pred             cchhHHHHhhHHhhcccCCCCCcHHHHHHHHHhhccc-CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Q 019957          129 PFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCY  207 (333)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~  207 (333)
                      +..-..|+.+++...........    +.+.+.+... ....|-|+|||.+.++.  ..   ...|+.+|+-.       
T Consensus       146 p~afdlYH~gfr~QV~kWP~nPl----d~ii~~ik~r~~~~vIaD~GCGEakiA~--~~---~~kV~SfDL~a-------  209 (325)
T KOG3045|consen  146 PTAFDLYHAGFRSQVKKWPENPL----DVIIRKIKRRPKNIVIADFGCGEAKIAS--SE---RHKVHSFDLVA-------  209 (325)
T ss_pred             cHHHHHHHHHHHHHHHhCCCChH----HHHHHHHHhCcCceEEEecccchhhhhh--cc---ccceeeeeeec-------
Confidence            33444677777766554332223    3333444333 35689999999998776  22   22799999732       


Q ss_pred             HHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhH
Q 019957          208 DFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR  287 (333)
Q Consensus       208 ~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~  287 (333)
                                 .+-+++.+|+.++|+++++.|++++..+|.- .|...++.|++|+|++||.++|.+....         
T Consensus       210 -----------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~SR---------  268 (325)
T KOG3045|consen  210 -----------VNERVIACDMRNVPLEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKSR---------  268 (325)
T ss_pred             -----------CCCceeeccccCCcCccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhhh---------
Confidence                       2456788999999999999999998777654 6788999999999999999999985432         


Q ss_pred             HHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEEe-CeEEEEEEeC
Q 019957          288 VLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ-QSFIMFAAQK  332 (333)
Q Consensus       288 ~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~~-~~~~~~~a~k  332 (333)
                                 +-+...+.+.+...||.+...... .-|++|..+|
T Consensus       269 -----------f~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK  303 (325)
T KOG3045|consen  269 -----------FSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK  303 (325)
T ss_pred             -----------cccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence                       345567899999999998876543 4446666655

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.33  E-value=2.1e-11  Score=116.01  Aligned_cols=129  Identities=16%  Similarity=0.202  Sum_probs=98.8

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (333)
                      .+.....+...+.+.++.+|||+|||+|..+..++... +..+++++|+++.+++.++++++..|   ..++.++.+|..
T Consensus       222 Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g---~~~v~~~~~Da~  298 (431)
T PRK14903        222 QGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK---LSSIEIKIADAE  298 (431)
T ss_pred             ECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCeEEEEECchh
Confidence            33334455556777788899999999999999888863 35699999999999999999999887   346899999998


Q ss_pred             CCC-CCCCCcceEEe------ccccccCCC----------------hHHHHHHHHHhccCCcEEEEEEecccCCCc
Q 019957          230 RLP-FASGFVDAVHA------GAALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYTSST  282 (333)
Q Consensus       230 ~lp-~~~~~fD~V~~------~~vl~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~  282 (333)
                      .++ +.+++||.|++      .+++.+-++                ..++|.++.+.|||||.++.+|.......+
T Consensus       299 ~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEn  374 (431)
T PRK14903        299 RLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEEN  374 (431)
T ss_pred             hhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhC
Confidence            775 44678999986      233332221                246689999999999999999876543333

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.33  E-value=2.3e-11  Score=108.58  Aligned_cols=120  Identities=18%  Similarity=0.142  Sum_probs=93.1

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      .....+.+.++.+|||+|||+|..+..++.... ...|+++|+++.+++.++++++..+   ..++.++..|...++...
T Consensus        62 ~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g---~~~v~~~~~D~~~~~~~~  138 (264)
T TIGR00446        62 IPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG---VLNVAVTNFDGRVFGAAV  138 (264)
T ss_pred             HHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC---CCcEEEecCCHHHhhhhc
Confidence            334456667788999999999999998887642 3589999999999999999999887   457899999987766545


Q ss_pred             CCcceEEec------cccccCCC----------------hHHHHHHHHHhccCCcEEEEEEecccC
Q 019957          236 GFVDAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRYT  279 (333)
Q Consensus       236 ~~fD~V~~~------~vl~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~~~  279 (333)
                      ++||.|++.      +++.+-++                ..++|+.+.+.|||||+|+.++-....
T Consensus       139 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~  204 (264)
T TIGR00446       139 PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP  204 (264)
T ss_pred             cCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence            679999862      23332221                135889999999999999998866543

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.33  E-value=3.1e-11  Score=114.96  Aligned_cols=122  Identities=17%  Similarity=0.259  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      +.....+...+.+.++.+|||+|||+|..+..+++..+...++++|+++.+++.++++++..|+    ++.++.+|+..+
T Consensus       230 d~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~----~~~~~~~D~~~~  305 (427)
T PRK10901        230 DAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL----KATVIVGDARDP  305 (427)
T ss_pred             CHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEcCcccc
Confidence            3334555667777788999999999999999999887556999999999999999999988763    468999999875


Q ss_pred             C--CCCCCcceEEecc------ccccCC------Ch----------HHHHHHHHHhccCCcEEEEEEecc
Q 019957          232 P--FASGFVDAVHAGA------ALHCWP------SP----------SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       232 p--~~~~~fD~V~~~~------vl~h~~------d~----------~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      +  +..++||.|++..      ++.+-+      .+          .++|+.+.++|||||.+++++...
T Consensus       306 ~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  375 (427)
T PRK10901        306 AQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI  375 (427)
T ss_pred             hhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            4  3356899999422      222211      11          368999999999999999988644

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.32  E-value=2.3e-11  Score=103.24  Aligned_cols=106  Identities=19%  Similarity=0.330  Sum_probs=84.3

Q ss_pred             eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CC--CCCCCcceEEecc
Q 019957          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP--FASGFVDAVHAGA  245 (333)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp--~~~~~fD~V~~~~  245 (333)
                      .+||||||.|.++..++...|+..++|+|++...+..+.+++...+   ..|+.++++|+.. ++  ++++++|.|+..+
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~---l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F   96 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG---LKNVRFLRGDARELLRRLFPPGSVDRIYINF   96 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT---TSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc---ccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence            8999999999999999999999999999999999999999988887   7899999999977 32  4568999998765


Q ss_pred             ccccCCCh--------HHHHHHHHHhccCCcEEEEEEecc
Q 019957          246 ALHCWPSP--------SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       246 vl~h~~d~--------~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      -=-+....        ..++..+.++|+|||.|.+.|-..
T Consensus        97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~  136 (195)
T PF02390_consen   97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE  136 (195)
T ss_dssp             -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H
T ss_pred             CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH
Confidence            32211100        378999999999999999988554

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=2.6e-10  Score=102.20  Aligned_cols=123  Identities=22%  Similarity=0.321  Sum_probs=94.7

Q ss_pred             eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccc--
Q 019957          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA--  246 (333)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v--  246 (333)
                      +|||+|||+|..+..++...+..+|+|+|+|+.+++.|+++...+++   .++.++++|+..--  .++||+|+++--  
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l---~~~~~~~~dlf~~~--~~~fDlIVsNPPYi  187 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL---VRVLVVQSDLFEPL--RGKFDLIVSNPPYI  187 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC---ccEEEEeeeccccc--CCceeEEEeCCCCC
Confidence            79999999999999999999888999999999999999999999873   56677777764421  348999998521  


Q ss_pred             ---cccC------CCh--------------HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHH
Q 019957          247 ---LHCW------PSP--------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEE  303 (333)
Q Consensus       247 ---l~h~------~d~--------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  303 (333)
                         ..+.      .+|              ..++.++.+.|+|||.+++..-.                       -..+
T Consensus       188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~-----------------------~q~~  244 (280)
T COG2890         188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL-----------------------TQGE  244 (280)
T ss_pred             CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC-----------------------CcHH
Confidence               1111      122              35678888999999998886521                       1357


Q ss_pred             HHHHHHHhCC-CcEEEE
Q 019957          304 EIEDLCTSCG-LTNYTS  319 (333)
Q Consensus       304 ~l~~ll~~aG-f~~v~~  319 (333)
                      .+.+++.+.| |..+..
T Consensus       245 ~v~~~~~~~~~~~~v~~  261 (280)
T COG2890         245 AVKALFEDTGFFEIVET  261 (280)
T ss_pred             HHHHHHHhcCCceEEEE
Confidence            8999999999 665553

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.31  E-value=1.6e-11  Score=104.06  Aligned_cols=104  Identities=24%  Similarity=0.267  Sum_probs=75.2

Q ss_pred             eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccc
Q 019957          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH  248 (333)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~  248 (333)
                      .++|+|||+|..++.++..+.  +|+|+|+|+.|++.+++.....-.  .........+...+--.+++.|+|++...+|
T Consensus        36 ~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~--~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H  111 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYC--HTPSTMSSDEMVDLLGGEESVDLITAAQAVH  111 (261)
T ss_pred             eEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccc--cCCccccccccccccCCCcceeeehhhhhHH
Confidence            899999999988888888866  999999999999999884322110  1111222222223322388999999999988


Q ss_pred             cCCChHHHHHHHHHhccCCc-EEEEEEecc
Q 019957          249 CWPSPSNAVAEISRILRSGG-VFVGTTFLR  277 (333)
Q Consensus       249 h~~d~~~~l~~~~r~LkpgG-~l~i~~~~~  277 (333)
                      ++ |..++.+++.|+||+.| .+.+-..+.
T Consensus       112 WF-dle~fy~~~~rvLRk~Gg~iavW~Y~d  140 (261)
T KOG3010|consen  112 WF-DLERFYKEAYRVLRKDGGLIAVWNYND  140 (261)
T ss_pred             hh-chHHHHHHHHHHcCCCCCEEEEEEccC
Confidence            76 56678999999998655 777766654

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.29  E-value=5.8e-11  Score=113.72  Aligned_cols=119  Identities=16%  Similarity=0.163  Sum_probs=92.7

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (333)
                      ......+...++.+|||+|||+|..+..+++.. ...+++++|+++.+++.++++++..|   ..++.++.+|+..++ +
T Consensus       240 ~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g---~~~v~~~~~Da~~~~-~  315 (445)
T PRK14904        240 ALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG---ITIIETIEGDARSFS-P  315 (445)
T ss_pred             HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC---CCeEEEEeCcccccc-c
Confidence            344556666778899999999999988887753 23589999999999999999999887   357899999998765 4


Q ss_pred             CCCcceEEec------cccccCC------C----------hHHHHHHHHHhccCCcEEEEEEeccc
Q 019957          235 SGFVDAVHAG------AALHCWP------S----------PSNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       235 ~~~fD~V~~~------~vl~h~~------d----------~~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      +++||+|++.      +++.+-+      +          ...+|.++.++|||||++++.|....
T Consensus       316 ~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~  381 (445)
T PRK14904        316 EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE  381 (445)
T ss_pred             CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            5689999962      2222111      1          23589999999999999999997654

>PRK04457 spermidine synthase; Provisional

Probab=99.28  E-value=3.8e-11  Score=106.81  Aligned_cols=110  Identities=10%  Similarity=0.134  Sum_probs=85.6

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-CCCCCCcceEEe
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAVHA  243 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~  243 (333)
                      .++.+|||||||+|.++..+.+..+..+++++|+++.+++.|++++...+.  .++++++.+|+.+. ....++||+|++
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~--~~rv~v~~~Da~~~l~~~~~~yD~I~~  142 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN--GERFEVIEADGAEYIAVHRHSTDVILV  142 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC--CCceEEEECCHHHHHHhCCCCCCEEEE
Confidence            346789999999999999999988888999999999999999998765331  46899999998543 222468999997


Q ss_pred             cccc-ccCC---ChHHHHHHHHHhccCCcEEEEEEec
Q 019957          244 GAAL-HCWP---SPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       244 ~~vl-~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ...- ...+   ....+++++.++|+|||++++....
T Consensus       143 D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~  179 (262)
T PRK04457        143 DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS  179 (262)
T ss_pred             eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence            5311 1111   1268899999999999999996543

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.27  E-value=5.8e-11  Score=100.64  Aligned_cols=101  Identities=21%  Similarity=0.248  Sum_probs=75.7

Q ss_pred             hhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-------
Q 019957          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------  232 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------  232 (333)
                      +-...++.+|||+|||+|.++..+.+.. +..+++++|+++.+     .         ..++.++++|+.+.+       
T Consensus        27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~---------~~~i~~~~~d~~~~~~~~~l~~   92 (188)
T TIGR00438        27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P---------IENVDFIRGDFTDEEVLNKIRE   92 (188)
T ss_pred             hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c---------CCCceEEEeeCCChhHHHHHHH
Confidence            3344678899999999999999888775 44579999999854     1         346888889987642       


Q ss_pred             -CCCCCcceEEecccc--------ccCC---ChHHHHHHHHHhccCCcEEEEEEe
Q 019957          233 -FASGFVDAVHAGAAL--------HCWP---SPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 -~~~~~fD~V~~~~vl--------~h~~---d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                       +.+++||+|++....        +|..   +...+++.+.++|+|||++++..+
T Consensus        93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~  147 (188)
T TIGR00438        93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF  147 (188)
T ss_pred             HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence             346689999986432        2211   135789999999999999999653

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.27  E-value=6.4e-11  Score=113.52  Aligned_cols=122  Identities=21%  Similarity=0.261  Sum_probs=94.1

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      +.....+...+...++.+|||+|||+|..+..+++.. +...++++|+++.+++.++++++..|+   .++.++.+|+..
T Consensus       236 d~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~  312 (444)
T PRK14902        236 DESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL---TNIETKALDARK  312 (444)
T ss_pred             ChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCCccc
Confidence            3333455566777778899999999999999988864 456999999999999999999988873   469999999977


Q ss_pred             CC--CCCCCcceEEecc------ccccCCCh----------------HHHHHHHHHhccCCcEEEEEEecc
Q 019957          231 LP--FASGFVDAVHAGA------ALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       231 lp--~~~~~fD~V~~~~------vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      ++  +. ++||+|++..      ++.|-++.                ..+|+.+.++|||||.++.++...
T Consensus       313 ~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        313 VHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             ccchhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence            53  33 6899999742      23222211                357899999999999999877544

>PRK00811 spermidine synthase; Provisional

Probab=99.24  E-value=2.1e-10  Score=103.25  Aligned_cols=109  Identities=15%  Similarity=0.242  Sum_probs=83.5

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC--cCCCCCeEEEEccCCCC-CCCCCCcceEE
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN--TILTSNLALVRADVCRL-PFASGFVDAVH  242 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~~~~~i~~~~~d~~~l-p~~~~~fD~V~  242 (333)
                      .+.+||+||||+|..+..+.+.....+|+++|+++.+++.+++.+...+  ....+++.++.+|+... ...+++||+|+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  155 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII  155 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence            4579999999999999999886445689999999999999999876432  11156899999998653 33467899999


Q ss_pred             eccccccCCC----hHHHHHHHHHhccCCcEEEEEE
Q 019957          243 AGAALHCWPS----PSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       243 ~~~vl~h~~d----~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      +...-.+.+.    ...+++.+++.|+|||++++..
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~  191 (283)
T PRK00811        156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS  191 (283)
T ss_pred             ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence            8643222221    1567899999999999998754

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.24  E-value=1.7e-10  Score=96.11  Aligned_cols=109  Identities=9%  Similarity=0.136  Sum_probs=82.4

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      +.+.+.+...++.+|||+|||+|.++..+++.+  .+++++|+++.+++.+++++..     ..+++++.+|+.++++++
T Consensus         3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~--~~v~~vE~~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~~~   75 (169)
T smart00650        3 DKIVRAANLRPGDTVLEIGPGKGALTEELLERA--ARVTAIEIDPRLAPRLREKFAA-----ADNLTVIHGDALKFDLPK   75 (169)
T ss_pred             HHHHHhcCCCCcCEEEEECCCccHHHHHHHhcC--CeEEEEECCHHHHHHHHHHhcc-----CCCEEEEECchhcCCccc
Confidence            345556666677899999999999999999885  4999999999999999988754     357999999999988777


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHh--ccCCcEEEEEE
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRI--LRSGGVFVGTT  274 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~--LkpgG~l~i~~  274 (333)
                      .+||.|+++--+ |+.  ...+..+.+.  +.++|.+++..
T Consensus        76 ~~~d~vi~n~Py-~~~--~~~i~~~l~~~~~~~~~~l~~q~  113 (169)
T smart00650       76 LQPYKVVGNLPY-NIS--TPILFKLLEEPPAFRDAVLMVQK  113 (169)
T ss_pred             cCCCEEEECCCc-ccH--HHHHHHHHhcCCCcceEEEEEEH
Confidence            779999886543 332  3344444432  34677777654

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.23  E-value=1.1e-10  Score=102.16  Aligned_cols=118  Identities=13%  Similarity=0.148  Sum_probs=91.4

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ...+++..+....++.+|||+|||+|+.+..++.. .+..+++++|+++.+++.|+++++..|+  ..+++++.+|+.+.
T Consensus        55 ~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl--~~~i~~~~gda~~~  132 (234)
T PLN02781         55 DEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV--DHKINFIQSDALSA  132 (234)
T ss_pred             HHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEccHHHH
Confidence            33445555555566789999999999988888776 3467999999999999999999999886  57899999999653


Q ss_pred             -C-----CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          232 -P-----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       232 -p-----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                       +     ...++||+|+....-   +.....+..+.+.|+|||++++...
T Consensus       133 L~~l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~  179 (234)
T PLN02781        133 LDQLLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDNT  179 (234)
T ss_pred             HHHHHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEcC
Confidence             2     114689999975431   2235678999999999999887553

>PLN02672 methionine S-methyltransferase

Probab=99.22  E-value=4.6e-10  Score=115.55  Aligned_cols=134  Identities=14%  Similarity=0.119  Sum_probs=98.6

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC-------------CCCCeEEEEccCCCCCC
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-------------LTSNLALVRADVCRLPF  233 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-------------~~~~i~~~~~d~~~lp~  233 (333)
                      +.+|||+|||+|..+..+++.++..+++|+|+|+.+++.|++++..+++.             ...++.++.+|+.+...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            45899999999999999999887779999999999999999998875421             02479999999866431


Q ss_pred             C-CCCcceEEecc--------------ccccCC------------------Ch------HHHHHHHHHhccCCcEEEEEE
Q 019957          234 A-SGFVDAVHAGA--------------ALHCWP------------------SP------SNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       234 ~-~~~fD~V~~~~--------------vl~h~~------------------d~------~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      . ..+||+|+++=              |.+|-+                  +.      .+++.++.++|+|||.+++..
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi  278 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM  278 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            1 23699999851              111110                  01      467788888999999988755


Q ss_pred             ecccCCCcchhhHHHHHhhhccCCCCCHHHHH-HHHHhCCCcEEEEEEeC
Q 019957          275 FLRYTSSTSLTGRVLRERILQNYNYLTEEEIE-DLCTSCGLTNYTSKVQQ  323 (333)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~-~ll~~aGf~~v~~~~~~  323 (333)
                      -..                       ..+.+. +++++.||+.++.+...
T Consensus       279 G~~-----------------------q~~~v~~~l~~~~gf~~~~~~~~~  305 (1082)
T PLN02672        279 GGR-----------------------PGQAVCERLFERRGFRITKLWQTK  305 (1082)
T ss_pred             Ccc-----------------------HHHHHHHHHHHHCCCCeeEEeeeh
Confidence            221                       124677 69999999988765543

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.22  E-value=1.3e-10  Score=100.40  Aligned_cols=114  Identities=18%  Similarity=0.213  Sum_probs=91.4

Q ss_pred             hhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---CCCCC
Q 019957          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF  237 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~  237 (333)
                      .+.......+||||||.|.++..+++..|+..++|+|+....+..+.+++.+.+   ..|+.+++.|+..+-   +++++
T Consensus        43 ~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~---l~Nlri~~~DA~~~l~~~~~~~s  119 (227)
T COG0220          43 LFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG---LKNLRLLCGDAVEVLDYLIPDGS  119 (227)
T ss_pred             HhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC---CCcEEEEcCCHHHHHHhcCCCCC
Confidence            343333358999999999999999999999999999999999999999999987   349999999997642   34669


Q ss_pred             cceEEeccccccCCCh--------HHHHHHHHHhccCCcEEEEEEecc
Q 019957          238 VDAVHAGAALHCWPSP--------SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       238 fD~V~~~~vl~h~~d~--------~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      .|-|..++-=-|-...        ..+++.+.++|+|||.|.+.|-..
T Consensus       120 l~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~  167 (227)
T COG0220         120 LDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE  167 (227)
T ss_pred             eeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence            9999876532221111        368999999999999999998554

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=99.21  E-value=3.1e-11  Score=101.25  Aligned_cols=146  Identities=21%  Similarity=0.269  Sum_probs=112.0

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccc
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (333)
                      ...++|||||-|.....+...+ -.+++-+|.|-.|++.++.--..     .-......+|-+.++|.++++|+|+++..
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp-----~i~~~~~v~DEE~Ldf~ens~DLiisSls  146 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDP-----SIETSYFVGDEEFLDFKENSVDLIISSLS  146 (325)
T ss_pred             CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCC-----ceEEEEEecchhcccccccchhhhhhhhh
Confidence            4589999999999999999987 45899999999999998863211     23456778999999999999999999999


Q ss_pred             cccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcch----hhHHHH--HhhhccCCCCC-HHHHHHHHHhCCCcEEEE
Q 019957          247 LHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL----TGRVLR--ERILQNYNYLT-EEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       247 l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~t-~~~l~~ll~~aGf~~v~~  319 (333)
                      +|++.|...-+..++..|||+|.|+-.-..... ...+    ......  +...+|...|+ ..++-.+|.++||....+
T Consensus       147 lHW~NdLPg~m~~ck~~lKPDg~FiasmlggdT-LyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tv  225 (325)
T KOG2940|consen  147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGGDT-LYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTV  225 (325)
T ss_pred             hhhhccCchHHHHHHHhcCCCccchhHHhcccc-HHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCccccee
Confidence            999999999999999999999999886655431 1111    000011  12235555554 478999999999987764

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=99.20  E-value=3.6e-10  Score=95.12  Aligned_cols=144  Identities=17%  Similarity=0.228  Sum_probs=106.1

Q ss_pred             cHHHHHHHHHhhcccC----CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc
Q 019957          151 PDEEFKMAQEYFKSAQ----GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~----~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~  226 (333)
                      ....++.+........    ..++|||||=+..+...-..   ..+|+.+|+++.                  .-.+.+.
T Consensus        32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~---~fdvt~IDLns~------------------~~~I~qq   90 (219)
T PF11968_consen   32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG---WFDVTRIDLNSQ------------------HPGILQQ   90 (219)
T ss_pred             hHHHHHHhhhhccccccccccceEEeecccCCCCcccccC---ceeeEEeecCCC------------------CCCceee
Confidence            3444555555443322    35899999976554433222   237999999762                  2336778


Q ss_pred             cCCCCCC---CCCCcceEEeccccccCCChH---HHHHHHHHhccCCcE-----EEEEEecccCCCcchhhHHHHHhhhc
Q 019957          227 DVCRLPF---ASGFVDAVHAGAALHCWPSPS---NAVAEISRILRSGGV-----FVGTTFLRYTSSTSLTGRVLRERILQ  295 (333)
Q Consensus       227 d~~~lp~---~~~~fD~V~~~~vl~h~~d~~---~~l~~~~r~LkpgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~  295 (333)
                      |+.+.|.   ++++||+|.++.||+.+++|.   ..++.+.+.|+|+|.     |+++.|..-               ..
T Consensus        91 DFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C---------------v~  155 (219)
T PF11968_consen   91 DFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC---------------VT  155 (219)
T ss_pred             ccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH---------------hh
Confidence            8888765   367999999999999999996   689999999999999     998887542               14


Q ss_pred             cCCCCCHHHHHHHHHhCCCcEEEEEEeCeEEEEEE
Q 019957          296 NYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAA  330 (333)
Q Consensus       296 ~~~~~t~~~l~~ll~~aGf~~v~~~~~~~~~~~~a  330 (333)
                      +.+|++.+.|..+++..||..++.........+..
T Consensus       156 NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l~  190 (219)
T PF11968_consen  156 NSRYMTEERLREIMESLGFTRVKYKKSKKLAYWLF  190 (219)
T ss_pred             cccccCHHHHHHHHHhCCcEEEEEEecCeEEEEEE
Confidence            57789999999999999999999766655544433

>PRK01581 speE spermidine synthase; Validated

Probab=99.20  E-value=3.6e-10  Score=103.12  Aligned_cols=135  Identities=18%  Similarity=0.177  Sum_probs=94.5

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH--HHh--cCcCCCCCeEEEEccCCC-CCCCCCCcce
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF--IKQ--DNTILTSNLALVRADVCR-LPFASGFVDA  240 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~--~~~--~~~~~~~~i~~~~~d~~~-lp~~~~~fD~  240 (333)
                      .+.+||+||||+|..+..+.+..+..+++++|+++.+++.|++.  +..  .+....++++++.+|+.+ +....++||+
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV  229 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV  229 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence            45699999999999999888876556999999999999999962  111  011115789999999976 3434568999


Q ss_pred             EEeccccccCCC------hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957          241 VHAGAALHCWPS------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       241 V~~~~vl~h~~d------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      |++... .....      ...+++.+++.|+|||++++.....      +....            ....+.+.++++||
T Consensus       230 IIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp------~~~~~------------~~~~i~~tL~~af~  290 (374)
T PRK01581        230 IIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP------ADAPL------------VYWSIGNTIEHAGL  290 (374)
T ss_pred             EEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh------hhhHH------------HHHHHHHHHHHhCC
Confidence            998632 11100      1468999999999999998864221      10000            01237788999999


Q ss_pred             cEEEE
Q 019957          315 TNYTS  319 (333)
Q Consensus       315 ~~v~~  319 (333)
                      .+...
T Consensus       291 ~v~~y  295 (374)
T PRK01581        291 TVKSY  295 (374)
T ss_pred             ceEEE
Confidence            87654

>TIGR00417 speE spermidine synthase

Probab=99.17  E-value=9.2e-10  Score=98.60  Aligned_cols=109  Identities=14%  Similarity=0.193  Sum_probs=81.4

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-cCCCCCeEEEEccCCCC-CCCCCCcceEEe
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL-PFASGFVDAVHA  243 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~  243 (333)
                      .+.+||+||||+|.++..+.+..+..+++++|+++.+++.+++.+...+ ....++++++.+|.... ....++||+|++
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            3459999999999999988887655689999999999999999875432 11135788888887442 222468999998


Q ss_pred             ccccccCCC----hHHHHHHHHHhccCCcEEEEEE
Q 019957          244 GAALHCWPS----PSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       244 ~~vl~h~~d----~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      .......+.    ...+++.+.+.|+|||++++..
T Consensus       152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~  186 (270)
T TIGR00417       152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS  186 (270)
T ss_pred             eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence            654222111    3577899999999999999863

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.16  E-value=8.7e-10  Score=105.66  Aligned_cols=141  Identities=17%  Similarity=0.266  Sum_probs=99.7

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-  231 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-  231 (333)
                      ...+.+.+.+...++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.|++++..++   ..++.++.+|+.+. 
T Consensus       284 ~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~--~V~gvD~s~~al~~A~~n~~~~~---~~~v~~~~~d~~~~l  358 (443)
T PRK13168        284 KMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA--EVVGVEGVEAMVERARENARRNG---LDNVTFYHANLEEDF  358 (443)
T ss_pred             HHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHcC---CCceEEEEeChHHhh
Confidence            3445566666666778999999999999999998864  99999999999999999988876   45799999998642 


Q ss_pred             ---CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHH
Q 019957          232 ---PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDL  308 (333)
Q Consensus       232 ---p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~l  308 (333)
                         ++.+++||+|++.---.-   ....++.+.+ ++|++.++++.....          +            ..++. .
T Consensus       359 ~~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSCnp~t----------l------------aRDl~-~  411 (443)
T PRK13168        359 TDQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSCNPAT----------L------------ARDAG-V  411 (443)
T ss_pred             hhhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEeChHH----------h------------hccHH-H
Confidence               344568999987432111   1344555554 689998888762211          0            12333 3


Q ss_pred             HHhCCCcEEEEEEeCeE
Q 019957          309 CTSCGLTNYTSKVQQSF  325 (333)
Q Consensus       309 l~~aGf~~v~~~~~~~~  325 (333)
                      |.+.||++.+....+-|
T Consensus       412 L~~~gY~l~~i~~~DmF  428 (443)
T PRK13168        412 LVEAGYRLKRAGMLDMF  428 (443)
T ss_pred             HhhCCcEEEEEEEeccC
Confidence            44689998886554444

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.14  E-value=5.5e-10  Score=112.52  Aligned_cols=130  Identities=17%  Similarity=0.159  Sum_probs=95.8

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-CCCCCcceEEec
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAG  244 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~  244 (333)
                      ++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.+++++..+++. ..++.++++|+.+.. -..++||+|++.
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~-~~~v~~i~~D~~~~l~~~~~~fDlIilD  615 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLS-GRQHRLIQADCLAWLKEAREQFDLIFID  615 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-ccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence            46799999999999999999875 447999999999999999999988751 147999999986531 114689999984


Q ss_pred             c-----------ccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCC
Q 019957          245 A-----------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCG  313 (333)
Q Consensus       245 ~-----------vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aG  313 (333)
                      -           +.....+...++..+.++|+|||.+++.+....                     ++.+  ...+.++|
T Consensus       616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~---------------------~~~~--~~~~~~~g  672 (702)
T PRK11783        616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG---------------------FKMD--EEGLAKLG  672 (702)
T ss_pred             CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc---------------------CChh--HHHHHhCC
Confidence            2           111122345678888999999999988653221                     1211  67778888


Q ss_pred             CcEEEEE
Q 019957          314 LTNYTSK  320 (333)
Q Consensus       314 f~~v~~~  320 (333)
                      +.+....
T Consensus       673 ~~~~~i~  679 (702)
T PRK11783        673 LKAEEIT  679 (702)
T ss_pred             CeEEEEe
Confidence            8766543

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.14  E-value=5.4e-10  Score=104.85  Aligned_cols=108  Identities=18%  Similarity=0.209  Sum_probs=81.2

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCC-CCeEEEEccCCCCC--C--CCCCcce
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT-SNLALVRADVCRLP--F--ASGFVDA  240 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~-~~i~~~~~d~~~lp--~--~~~~fD~  240 (333)
                      ++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.+++++..+++  . .++.++.+|+.+..  +  ..++||+
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~Ngl--~~~~v~~i~~D~~~~l~~~~~~~~~fDl  296 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKL--DLSKAEFVRDDVFKLLRTYRDRGEKFDV  296 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--CCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence            46799999999999988766544 45899999999999999999998874  3 47899999986642  1  2468999


Q ss_pred             EEeccccccC---------CChHHHHHHHHHhccCCcEEEEEEec
Q 019957          241 VHAGAALHCW---------PSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       241 V~~~~vl~h~---------~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      |++.--...-         .+-..++..+.++|+|||.|+..+.+
T Consensus       297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs  341 (396)
T PRK15128        297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS  341 (396)
T ss_pred             EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            9986321110         11234455678999999999987743

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.13  E-value=2.7e-10  Score=104.20  Aligned_cols=112  Identities=26%  Similarity=0.317  Sum_probs=78.5

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc-------CCCCCeEEEEccCCCCC----CC
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-------ILTSNLALVRADVCRLP----FA  234 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-------~~~~~i~~~~~d~~~lp----~~  234 (333)
                      ++.+|||+|||-|..+....... -..++|+|++...++.|+++.....-       ...-...++.+|.....    +.
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            57899999999887666666654 45899999999999999998832110       00124567888775321    23


Q ss_pred             --CCCcceEEeccccccCCCh----HHHHHHHHHhccCCcEEEEEEeccc
Q 019957          235 --SGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       235 --~~~fD~V~~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                        ...||+|.|...||+.=..    ..+|+.+...|+|||+|+.+++...
T Consensus       141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~  190 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD  190 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred             ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence              3599999999999986332    4689999999999999999998764

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.13  E-value=2e-10  Score=96.75  Aligned_cols=155  Identities=17%  Similarity=0.149  Sum_probs=108.3

Q ss_pred             HhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC--CCCCCC
Q 019957          160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGF  237 (333)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~  237 (333)
                      +...+.++.+|||...|-|+.+....++| ...|+-+|.+++.++.|.-+-=..++ ....+.++.+|..+.  .|.|.+
T Consensus       128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l-~~~~i~iilGD~~e~V~~~~D~s  205 (287)
T COG2521         128 ELVKVKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSREL-FEIAIKIILGDAYEVVKDFDDES  205 (287)
T ss_pred             heeccccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccc-cccccEEecccHHHHHhcCCccc
Confidence            34456678999999999999999999997 56899999999999887653212222 134689999999764  477999


Q ss_pred             cceEEecc---ccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957          238 VDAVHAGA---ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       238 fD~V~~~~---vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      ||+|+..-   ++-----...+.+|++|+|||||.++-.+-+..        +.++..       --+..+.+.|+++||
T Consensus       206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg--------~ryrG~-------d~~~gVa~RLr~vGF  270 (287)
T COG2521         206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG--------KRYRGL-------DLPKGVAERLRRVGF  270 (287)
T ss_pred             cceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC--------cccccC-------ChhHHHHHHHHhcCc
Confidence            99998421   100001125789999999999999988775542        111111       124678899999999


Q ss_pred             cEEEEEEeCeEEEEEEeCC
Q 019957          315 TNYTSKVQQSFIMFAAQKP  333 (333)
Q Consensus       315 ~~v~~~~~~~~~~~~a~kp  333 (333)
                      .+++...  ..+.+.|.||
T Consensus       271 ~~v~~~~--~~~gv~A~k~  287 (287)
T COG2521         271 EVVKKVR--EALGVVAVKP  287 (287)
T ss_pred             eeeeeeh--hccceEEecC
Confidence            9877432  2344566665

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.13  E-value=6.7e-10  Score=94.85  Aligned_cols=122  Identities=13%  Similarity=0.138  Sum_probs=96.1

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE-ccCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVC  229 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~  229 (333)
                      .+..+.+..++...++++|||||++.|+.+.+++...+ +.+++.+|+++++.+.|+++++..|+  ...+.++. +|..
T Consensus        45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~--~~~i~~~~~gdal  122 (219)
T COG4122          45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV--DDRIELLLGGDAL  122 (219)
T ss_pred             hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC--cceEEEEecCcHH
Confidence            34445555556666788999999999999999999877 78999999999999999999999997  66688888 4764


Q ss_pred             CC-C-CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957          230 RL-P-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       230 ~l-p-~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      +. . ...++||+|+.-..=.   +-..++..+.++|+|||++++-.....
T Consensus       123 ~~l~~~~~~~fDliFIDadK~---~yp~~le~~~~lLr~GGliv~DNvl~~  170 (219)
T COG4122         123 DVLSRLLDGSFDLVFIDADKA---DYPEYLERALPLLRPGGLIVADNVLFG  170 (219)
T ss_pred             HHHHhccCCCccEEEEeCChh---hCHHHHHHHHHHhCCCcEEEEeecccC
Confidence            32 2 3468999999754311   235789999999999999998665443

>PRK03612 spermidine synthase; Provisional

Probab=99.12  E-value=6.7e-10  Score=108.21  Aligned_cols=131  Identities=17%  Similarity=0.139  Sum_probs=93.2

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH--HHhcC--cCCCCCeEEEEccCCCC-CCCCCCcce
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF--IKQDN--TILTSNLALVRADVCRL-PFASGFVDA  240 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~--~~~~~--~~~~~~i~~~~~d~~~l-p~~~~~fD~  240 (333)
                      ++++|||||||+|..+..+.+.....+++++|+++++++.++++  +...+  ....++++++.+|..+. ...+++||+
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv  376 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV  376 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence            46799999999999999998764336999999999999999983  32211  11146899999998663 223568999


Q ss_pred             EEeccccccCCCh-----HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957          241 VHAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       241 V~~~~vl~h~~d~-----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      |++...-...+.+     .++++.+++.|||||++++......      ...            -...++.+.+++.||
T Consensus       377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~------~~~------------~~~~~i~~~l~~~gf  437 (521)
T PRK03612        377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPY------FAP------------KAFWSIEATLEAAGL  437 (521)
T ss_pred             EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcc------cch------------HHHHHHHHHHHHcCC
Confidence            9997543332222     3578999999999999998753221      000            011467888889999

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=99.10  E-value=3.5e-09  Score=93.32  Aligned_cols=147  Identities=20%  Similarity=0.180  Sum_probs=109.2

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh---cC----------------------------
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ---DN----------------------------  214 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~---~~----------------------------  214 (333)
                      ...+||--|||.|+++..++..|.  .+.|.|.|--|+-..+-.+..   .+                            
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            356899999999999999999987  999999999987655543321   00                            


Q ss_pred             ------cCCCCCeEEEEccCCCCCCCC---CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchh
Q 019957          215 ------TILTSNLALVRADVCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT  285 (333)
Q Consensus       215 ------~~~~~~i~~~~~d~~~lp~~~---~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~  285 (333)
                            +....++....||+.++...+   ++||+|+..+.|.--++....|+.|.++|||||+.+-.-|..+.... . 
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~-~-  211 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEP-M-  211 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCC-C-
Confidence                  012346778888887764344   79999999988888888899999999999999988776665542111 0 


Q ss_pred             hHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957          286 GRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       286 ~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~  321 (333)
                      .     ......--++.+|+..+.++.||++++...
T Consensus       212 ~-----~~~~~sveLs~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  212 S-----IPNEMSVELSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             C-----CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence            0     000112458899999999999999987644

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=99.09  E-value=1.8e-09  Score=97.08  Aligned_cols=139  Identities=16%  Similarity=0.183  Sum_probs=105.5

Q ss_pred             CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CCCCCCCcceEEeccc
Q 019957          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASGFVDAVHAGAA  246 (333)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~V~~~~v  246 (333)
                      ...+|+|.|.|..+..+...+|  .+-+++++...+..+...+.       +++..+-+|..+ .|    +-|+|++-++
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~~P----~~daI~mkWi  245 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQDTP----KGDAIWMKWI  245 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-------CCcceecccccccCC----CcCeEEEEee
Confidence            6799999999999999999888  79999999887776666532       457788888854 44    4579999999


Q ss_pred             cccCCCh--HHHHHHHHHhccCCcEEEEEEecccC--CC------cchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcE
Q 019957          247 LHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYT--SS------TSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN  316 (333)
Q Consensus       247 l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~  316 (333)
                      |||++|-  .++|++++..|+|||.+++.+...+.  ..      ..+....+.......-.-.+..+++.++.++||.+
T Consensus       246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~  325 (342)
T KOG3178|consen  246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPV  325 (342)
T ss_pred             cccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCce
Confidence            9999876  48999999999999999999875432  11      11111222222223345578999999999999998


Q ss_pred             EEE
Q 019957          317 YTS  319 (333)
Q Consensus       317 v~~  319 (333)
                      ...
T Consensus       326 ~~~  328 (342)
T KOG3178|consen  326 CMV  328 (342)
T ss_pred             eEE
Confidence            774

>PHA03412 putative methyltransferase; Provisional

Probab=99.09  E-value=1.3e-09  Score=93.70  Aligned_cols=113  Identities=15%  Similarity=0.179  Sum_probs=81.5

Q ss_pred             CCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeE
Q 019957          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA  222 (333)
Q Consensus       146 ~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~  222 (333)
                      ..+..+..+...+...  ...+.+|||+|||+|.++..+++..   +..+++++|+++.+++.|+++        ..++.
T Consensus        31 GqFfTP~~iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n--------~~~~~  100 (241)
T PHA03412         31 GAFFTPIGLARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI--------VPEAT  100 (241)
T ss_pred             CccCCCHHHHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh--------ccCCE
Confidence            3456666665555322  2236799999999999999888753   245899999999999999975        34688


Q ss_pred             EEEccCCCCCCCCCCcceEEeccccccC--CC----------hHHHHHHHHHhccCCcE
Q 019957          223 LVRADVCRLPFASGFVDAVHAGAALHCW--PS----------PSNAVAEISRILRSGGV  269 (333)
Q Consensus       223 ~~~~d~~~lp~~~~~fD~V~~~~vl~h~--~d----------~~~~l~~~~r~LkpgG~  269 (333)
                      ++.+|+...++ +++||+|+++=-..-.  .+          ...+++.+.+++++|+.
T Consensus       101 ~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        101 WINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             EEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            99999987664 5689999996433211  11          24578888886666664

>PLN02476 O-methyltransferase

Probab=99.08  E-value=1.9e-09  Score=95.68  Aligned_cols=118  Identities=14%  Similarity=0.113  Sum_probs=92.0

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-  230 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-  230 (333)
                      ...+++..++...++++|||||+++|+.+.+++... +...++.+|.++..++.|+++++..|+  ..+++++.+|+.+ 
T Consensus       105 ~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl--~~~I~li~GdA~e~  182 (278)
T PLN02476        105 DQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV--SHKVNVKHGLAAES  182 (278)
T ss_pred             HHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHH
Confidence            334445555555667899999999999999998763 356899999999999999999999986  6789999999855 


Q ss_pred             CC-C----CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          231 LP-F----ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       231 lp-~----~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ++ +    ..++||+|+...-=   .+-...++.+.+.|+|||++++-..
T Consensus       183 L~~l~~~~~~~~FD~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~DNv  229 (278)
T PLN02476        183 LKSMIQNGEGSSYDFAFVDADK---RMYQDYFELLLQLVRVGGVIVMDNV  229 (278)
T ss_pred             HHHHHhcccCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCcEEEEecC
Confidence            22 1    13689999986531   2235678889999999999888544

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.07  E-value=3.1e-09  Score=90.33  Aligned_cols=121  Identities=10%  Similarity=0.086  Sum_probs=85.3

Q ss_pred             cHHHHHHHHHhhcc-cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC
Q 019957          151 PDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (333)
Q Consensus       151 ~~~~~~~~~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (333)
                      .+...+.+.+.+.. .++.+|||+|||+|.++..+...+ ..+|+++|.++.+++.++++++..+   ..++.++.+|+.
T Consensus        37 ~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~---~~~v~~~~~D~~  112 (199)
T PRK10909         37 TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLK---AGNARVVNTNAL  112 (199)
T ss_pred             CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhC---CCcEEEEEchHH
Confidence            34444445555432 456799999999999998765555 3599999999999999999988876   347999999986


Q ss_pred             CC-CCCCCCcceEEeccccccCCChHHHHHHHHH--hccCCcEEEEEEec
Q 019957          230 RL-PFASGFVDAVHAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFL  276 (333)
Q Consensus       230 ~l-p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r--~LkpgG~l~i~~~~  276 (333)
                      +. +...++||+|++.--... .-...+++.+..  +|+|+|.+++....
T Consensus       113 ~~l~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        113 SFLAQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             HHHhhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            53 222457999998654321 122345555554  37899988887643

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.07  E-value=1.5e-09  Score=92.69  Aligned_cols=116  Identities=13%  Similarity=0.206  Sum_probs=90.0

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-C-
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-  232 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-  232 (333)
                      +.+..++...+..+|||||+++|+.+.++++..+ +++++.+|+++...+.|++.++..|+  ..+++++.+|+.+. + 
T Consensus        35 ~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~--~~~I~~~~gda~~~l~~  112 (205)
T PF01596_consen   35 QLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL--DDRIEVIEGDALEVLPE  112 (205)
T ss_dssp             HHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG--GGGEEEEES-HHHHHHH
T ss_pred             HHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC--CCcEEEEEeccHhhHHH
Confidence            4444444455677999999999999999998754 57999999999999999999999886  67899999998652 2 


Q ss_pred             ----CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          233 ----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       233 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                          ...++||+|+.-..=.   +-...+..+.+.|+|||++++-...
T Consensus       113 l~~~~~~~~fD~VFiDa~K~---~y~~y~~~~~~ll~~ggvii~DN~l  157 (205)
T PF01596_consen  113 LANDGEEGQFDFVFIDADKR---NYLEYFEKALPLLRPGGVIIADNVL  157 (205)
T ss_dssp             HHHTTTTTSEEEEEEESTGG---GHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred             HHhccCCCceeEEEEccccc---chhhHHHHHhhhccCCeEEEEcccc
Confidence                1135899999865422   2356788889999999999985543

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.06  E-value=3.7e-09  Score=96.80  Aligned_cols=113  Identities=12%  Similarity=0.175  Sum_probs=81.6

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      ..+.+.+++...++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.|+++++.++   ..++.++++|+.++..
T Consensus       161 l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~~---l~~v~~~~~D~~~~~~  235 (315)
T PRK03522        161 LYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAELG---LTNVQFQALDSTQFAT  235 (315)
T ss_pred             HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHcC---CCceEEEEcCHHHHHH
Confidence            334445555544568999999999999999998764  99999999999999999998877   4579999999976532


Q ss_pred             -CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          234 -ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       234 -~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                       ..++||+|++.---.  .-... +.++...++|+++++++.
T Consensus       236 ~~~~~~D~Vv~dPPr~--G~~~~-~~~~l~~~~~~~ivyvsc  274 (315)
T PRK03522        236 AQGEVPDLVLVNPPRR--GIGKE-LCDYLSQMAPRFILYSSC  274 (315)
T ss_pred             hcCCCCeEEEECCCCC--CccHH-HHHHHHHcCCCeEEEEEC
Confidence             245799999863211  00122 333334467887777765

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.05  E-value=2.5e-09  Score=89.21  Aligned_cols=113  Identities=19%  Similarity=0.165  Sum_probs=77.0

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC----CCCCCcc
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVD  239 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD  239 (333)
                      ..++.+|||+|||+|..+..++......+|+..|.++ .++..+.+++.++.....++.+...|..+..    ....+||
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D  121 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD  121 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence            4567899999999999999999884456999999998 9999999888765211467777777765421    2346899


Q ss_pred             eEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      +|+...++..-.....+++.+.++|+++|.+++....+
T Consensus       122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R  159 (173)
T PF10294_consen  122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR  159 (173)
T ss_dssp             EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred             EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence            99999999987777889999999999999988877655

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.04  E-value=1.2e-08  Score=92.14  Aligned_cols=139  Identities=18%  Similarity=0.219  Sum_probs=108.1

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc-cCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVC  229 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~  229 (333)
                      ..+..+.+.++-...+|..|||-=||||.++..+.-.|.  .++|.|++..|++-++.+++..+   .....+... |+.
T Consensus       182 ~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl~~y~---i~~~~~~~~~Da~  256 (347)
T COG1041         182 DPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINLEYYG---IEDYPVLKVLDAT  256 (347)
T ss_pred             CHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhhhhhC---cCceeEEEecccc
Confidence            344556677777778899999999999999999988876  99999999999999999999876   345555665 999


Q ss_pred             CCCCCCCCcceEEeccccccC-----CC----hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCC
Q 019957          230 RLPFASGFVDAVHAGAALHCW-----PS----PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYL  300 (333)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~-----~d----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (333)
                      .+|+++.++|.|++---..-.     ..    -.++|+.+.++||+||++++..+..                       
T Consensus       257 ~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~-----------------------  313 (347)
T COG1041         257 NLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRD-----------------------  313 (347)
T ss_pred             cCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCc-----------------------
Confidence            999988889999973222111     11    1478999999999999999988621                       


Q ss_pred             CHHHHHHHHHhCCCcEEEEEE
Q 019957          301 TEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       301 t~~~l~~ll~~aGf~~v~~~~  321 (333)
                          ....+++.||+++....
T Consensus       314 ----~~~~~~~~~f~v~~~~~  330 (347)
T COG1041         314 ----PRHELEELGFKVLGRFT  330 (347)
T ss_pred             ----chhhHhhcCceEEEEEE
Confidence                22456788998877644

>PLN02366 spermidine synthase

Probab=99.03  E-value=3.5e-09  Score=96.02  Aligned_cols=109  Identities=17%  Similarity=0.209  Sum_probs=82.3

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc-CCCCCeEEEEccCCCC-C-CCCCCcceEE
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL-P-FASGFVDAVH  242 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-~~~~~i~~~~~d~~~l-p-~~~~~fD~V~  242 (333)
                      .+.+||+||||.|..+..+.+.....+++.+|+++.+++.+++.+...+. ...++++++.+|.... . .++++||+|+
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi  170 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII  170 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence            46799999999999999998874346899999999999999998764211 1256899999997432 1 2256899999


Q ss_pred             eccccccCCC----hHHHHHHHHHhccCCcEEEEEE
Q 019957          243 AGAALHCWPS----PSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       243 ~~~vl~h~~d----~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      +...-.+.+.    ...+++.+++.|+|||+++...
T Consensus       171 ~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        171 VDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             EcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            8543332221    1467999999999999997754

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.03  E-value=5.6e-09  Score=99.85  Aligned_cols=113  Identities=17%  Similarity=0.264  Sum_probs=84.4

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC--
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--  231 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--  231 (333)
                      ..+.+.+.+...++.+|||+|||+|.++..+++...  +|+|+|+++.+++.|++++..++   ..++.++.+|+.+.  
T Consensus       280 l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~---~~nv~~~~~d~~~~l~  354 (431)
T TIGR00479       280 LVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNG---IANVEFLAGTLETVLP  354 (431)
T ss_pred             HHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhC---CCceEEEeCCHHHHHH
Confidence            344555566556668999999999999999998764  89999999999999999998876   46899999998652  


Q ss_pred             --CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          232 --PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       232 --p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                        ++.+++||+|++.-.-  ..-...+++.+.+ ++|++.++++.
T Consensus       355 ~~~~~~~~~D~vi~dPPr--~G~~~~~l~~l~~-l~~~~ivyvsc  396 (431)
T TIGR00479       355 KQPWAGQIPDVLLLDPPR--KGCAAEVLRTIIE-LKPERIVYVSC  396 (431)
T ss_pred             HHHhcCCCCCEEEECcCC--CCCCHHHHHHHHh-cCCCEEEEEcC
Confidence              2335679999974321  1112455666554 88988877753

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.99  E-value=6.2e-09  Score=89.94  Aligned_cols=126  Identities=15%  Similarity=0.191  Sum_probs=92.6

Q ss_pred             CcHHHHHHHHHhhccc---CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc
Q 019957          150 GPDEEFKMAQEYFKSA---QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (333)
Q Consensus       150 ~~~~~~~~~~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~  226 (333)
                      .-++.++++.+.++..   .+..|||+|||+|..+..+....+...++++|.|+.++..|.++....++  ..++.++.-
T Consensus       129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l--~g~i~v~~~  206 (328)
T KOG2904|consen  129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL--SGRIEVIHN  206 (328)
T ss_pred             cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh--cCceEEEec
Confidence            3455667777766543   34579999999999999999988889999999999999999999988876  667777744


Q ss_pred             cCC-----CCCCCCCCcceEEeccccccCC------------Ch--------------HHHHHHHHHhccCCcEEEEEEe
Q 019957          227 DVC-----RLPFASGFVDAVHAGAALHCWP------------SP--------------SNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       227 d~~-----~lp~~~~~fD~V~~~~vl~h~~------------d~--------------~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      +.+     ..+...+++|+++++--.=.-.            +|              ..++.-+.|.|+|||.+.+...
T Consensus       207 ~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~  286 (328)
T KOG2904|consen  207 IMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV  286 (328)
T ss_pred             ccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence            332     2345578999999863210000            11              2345667899999999999876


Q ss_pred             cc
Q 019957          276 LR  277 (333)
Q Consensus       276 ~~  277 (333)
                      ..
T Consensus       287 ~~  288 (328)
T KOG2904|consen  287 ER  288 (328)
T ss_pred             cc
Confidence            43

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.97  E-value=2.9e-09  Score=93.90  Aligned_cols=113  Identities=25%  Similarity=0.366  Sum_probs=86.8

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC---CCCCeEEEEccCCC------CCCCC
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---LTSNLALVRADVCR------LPFAS  235 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~---~~~~i~~~~~d~~~------lp~~~  235 (333)
                      .++..+||+|||-|..+....+.+ -..++|+||.+..++.|+++.+...-.   ..-.+.|+.+|-..      +++++
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d  194 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD  194 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence            356789999999988777777766 448999999999999999876543210   01236788888743      34566


Q ss_pred             CCcceEEeccccccC----CChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957          236 GFVDAVHAGAALHCW----PSPSNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~----~d~~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      .+||+|.|-+++|+-    .....+|+.+.+.|||||+++.+.|+..
T Consensus       195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd  241 (389)
T KOG1975|consen  195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD  241 (389)
T ss_pred             CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence            679999999988874    2345789999999999999999998764

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.97  E-value=1.8e-08  Score=84.51  Aligned_cols=120  Identities=20%  Similarity=0.259  Sum_probs=86.0

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCe---------EEEEeCCHHHHHHHHHHHHhcCcCCCCCeE
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG---------VVALDFSENMLRQCYDFIKQDNTILTSNLA  222 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~---------v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~  222 (333)
                      ......+..+....++..|||--||+|.++...+..+.+..         ++|.|+++.+++.++++++..++  ...+.
T Consensus        14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~--~~~i~   91 (179)
T PF01170_consen   14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV--EDYID   91 (179)
T ss_dssp             HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---CGGEE
T ss_pred             HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc--CCceE
Confidence            44556666666677788999999999999988877765545         89999999999999999998886  56789


Q ss_pred             EEEccCCCCCCCCCCcceEEeccccccC-CCh-------HHHHHHHHHhccCCcEEEEEE
Q 019957          223 LVRADVCRLPFASGFVDAVHAGAALHCW-PSP-------SNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       223 ~~~~d~~~lp~~~~~fD~V~~~~vl~h~-~d~-------~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      +.+.|+.++++.++++|+|+++--...- .+.       ..+++++.++|++ ..+++.+
T Consensus        92 ~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~  150 (179)
T PF01170_consen   92 FIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT  150 (179)
T ss_dssp             EEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred             EEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence            9999999999778899999996443321 111       3567888899999 4344433

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.96  E-value=6.1e-09  Score=88.41  Aligned_cols=149  Identities=17%  Similarity=0.203  Sum_probs=93.7

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC-----------------------------
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-----------------------------  216 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-----------------------------  216 (333)
                      .+..+|||||.+|.++..+++.+....+.|+||++..++.|++.++...-.                             
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~  137 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF  137 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence            466899999999999999999976678999999999999999977431100                             


Q ss_pred             ----------CCCCeEEEEccCCCCCCCCCCcceEEeccccccC----CC--hHHHHHHHHHhccCCcEEEEEEecccCC
Q 019957          217 ----------LTSNLALVRADVCRLPFASGFVDAVHAGAALHCW----PS--PSNAVAEISRILRSGGVFVGTTFLRYTS  280 (333)
Q Consensus       217 ----------~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~----~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~  280 (333)
                                ...+..+...|+.  .+....||+|+|..+--++    .|  ...+++.+.++|.|||+|++.. -....
T Consensus       138 t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP-QpWks  214 (288)
T KOG2899|consen  138 TTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP-QPWKS  214 (288)
T ss_pred             cccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC-CchHH
Confidence                      0001111122222  2235689999986654322    12  3689999999999999998843 21100


Q ss_pred             CcchhhHHHHH-hhhccCCCCCHHHHHHHHHhC--CCcEEE
Q 019957          281 STSLTGRVLRE-RILQNYNYLTEEEIEDLCTSC--GLTNYT  318 (333)
Q Consensus       281 ~~~~~~~~~~~-~~~~~~~~~t~~~l~~ll~~a--Gf~~v~  318 (333)
                      ...- .+.... .......++.++.+..++.+.  ||+.++
T Consensus       215 Y~ka-ar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e  254 (288)
T KOG2899|consen  215 YKKA-ARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVE  254 (288)
T ss_pred             HHHH-HHHHHHhhcCccceecCHHHHHhhhhhhhhheeeec
Confidence            0000 000100 111223456788888888776  666544

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.96  E-value=1.9e-08  Score=80.76  Aligned_cols=123  Identities=16%  Similarity=0.299  Sum_probs=103.3

Q ss_pred             CCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE
Q 019957          147 GFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR  225 (333)
Q Consensus       147 ~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~  225 (333)
                      -.|......+.+...+.+..+.-|||+|.|||-++..+.+++ +...++.+|.|++......++        .+...++.
T Consensus        29 I~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~--------~p~~~ii~  100 (194)
T COG3963          29 ILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL--------YPGVNIIN  100 (194)
T ss_pred             ecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh--------CCCccccc
Confidence            356777778889999998888899999999999999999986 456899999999999888876        67788999


Q ss_pred             ccCCCCC-----CCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecc
Q 019957          226 ADVCRLP-----FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       226 ~d~~~lp-----~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      +|+.++.     +.+..||.|+|.--+-.++-.  .+.|+++...|.+||.++..+...
T Consensus       101 gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp  159 (194)
T COG3963         101 GDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP  159 (194)
T ss_pred             cchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence            9998764     567889999998776666533  578999999999999999988763

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.95  E-value=1.1e-09  Score=102.53  Aligned_cols=144  Identities=24%  Similarity=0.306  Sum_probs=93.2

Q ss_pred             cHHHHHHHHHhhcc--cC--CCeEEEEcCCcCHHHHHHHHhCCCCeEEEE---eCCHHHHHHHHHHHHhcCcCCCCCeEE
Q 019957          151 PDEEFKMAQEYFKS--AQ--GGLLVDVSCGSGLFSRKFAKSGTYSGVVAL---DFSENMLRQCYDFIKQDNTILTSNLAL  223 (333)
Q Consensus       151 ~~~~~~~~~~~l~~--~~--~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~---D~s~~~~~~a~~~~~~~~~~~~~~i~~  223 (333)
                      .+..++.|.+.++.  ..  -.++||||||+|.|+.+|.+++-  .+..+   |..+..++.|.++          ++..
T Consensus        98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V--~t~s~a~~d~~~~qvqfaleR----------Gvpa  165 (506)
T PF03141_consen   98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV--TTMSFAPNDEHEAQVQFALER----------GVPA  165 (506)
T ss_pred             HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc--eEEEcccccCCchhhhhhhhc----------Ccch
Confidence            34455666666654  22  23589999999999999998852  22222   3344555555542          2333


Q ss_pred             EEcc--CCCCCCCCCCcceEEeccccccCC-ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCC
Q 019957          224 VRAD--VCRLPFASGFVDAVHAGAALHCWP-SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYL  300 (333)
Q Consensus       224 ~~~d--~~~lp~~~~~fD~V~~~~vl~h~~-d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (333)
                      +.+-  -..+||+++.||+|.|+..+-.+. +-..+|-++.|+|+|||+++++.+..+...    ......         
T Consensus       166 ~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~----~~~~~~---------  232 (506)
T PF03141_consen  166 MIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRT----DEDLEE---------  232 (506)
T ss_pred             hhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccc----hHHHHH---------
Confidence            3333  367999999999999998876553 335689999999999999999876543000    000111         


Q ss_pred             CHHHHHHHHHhCCCcEEEE
Q 019957          301 TEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       301 t~~~l~~ll~~aGf~~v~~  319 (333)
                      ..+.++++.+..-++.+..
T Consensus       233 ~~~~~~~l~~~lCW~~va~  251 (506)
T PF03141_consen  233 EWNAMEDLAKSLCWKKVAE  251 (506)
T ss_pred             HHHHHHHHHHHHHHHHhee
Confidence            1246677777777776653

; GO: 0008168 methyltransferase activity

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.95  E-value=2.5e-09  Score=95.90  Aligned_cols=104  Identities=19%  Similarity=0.272  Sum_probs=83.2

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      ..+++|||||||+|-++...+++| ...|+++|.|.- ++.|++.+..+++  ...++++.+.++++.++-+++|+|++-
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~i-a~~a~~iv~~N~~--~~ii~vi~gkvEdi~LP~eKVDiIvSE  134 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSI-ADFARKIVKDNGL--EDVITVIKGKVEDIELPVEKVDIIVSE  134 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHH-HHHHHHHHHhcCc--cceEEEeecceEEEecCccceeEEeeh
Confidence            457899999999999999999998 679999997664 4899999999886  667999999998876557899999984


Q ss_pred             cc---cccCCChHHHHHHHHHhccCCcEEEE
Q 019957          245 AA---LHCWPSPSNAVAEISRILRSGGVFVG  272 (333)
Q Consensus       245 ~v---l~h~~d~~~~l~~~~r~LkpgG~l~i  272 (333)
                      +.   |-+-.-...+|-.=.+.|+|||.++=
T Consensus       135 WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P  165 (346)
T KOG1499|consen  135 WMGYFLLYESMLDSVLYARDKWLKEGGLIYP  165 (346)
T ss_pred             hhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence            43   22222334566666789999998763

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.94  E-value=7.6e-09  Score=90.71  Aligned_cols=117  Identities=12%  Similarity=0.117  Sum_probs=91.3

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ...+++..++...+..+|||||+++|+.+.+++... ++++++.+|.++...+.|++.++..|+  ..+++++.+++.+.
T Consensus        66 ~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~--~~~I~~~~G~a~e~  143 (247)
T PLN02589         66 DEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV--AHKIDFREGPALPV  143 (247)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCceEEEeccHHHH
Confidence            344555555555667799999999999999998763 467999999999999999999999987  68999999998552


Q ss_pred             -C-C-----CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          232 -P-F-----ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       232 -p-~-----~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                       + +     ..++||+|+..+-=.   .-...+..+.+.|+|||++++-.
T Consensus       144 L~~l~~~~~~~~~fD~iFiDadK~---~Y~~y~~~~l~ll~~GGviv~DN  190 (247)
T PLN02589        144 LDQMIEDGKYHGTFDFIFVDADKD---NYINYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_pred             HHHHHhccccCCcccEEEecCCHH---HhHHHHHHHHHhcCCCeEEEEcC
Confidence             3 1     136899999865421   22466788889999999988743

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.92  E-value=6.4e-09  Score=100.89  Aligned_cols=108  Identities=11%  Similarity=0.116  Sum_probs=87.7

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--CCCCCcceEEe
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHA  243 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~  243 (333)
                      .+..+||||||.|.++..++...|+..++|+|++...+..+.++....+   ..|+.++..|+..+.  ++++++|.|+.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~---l~N~~~~~~~~~~~~~~~~~~sv~~i~i  423 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN---ITNFLLFPNNLDLILNDLPNNSLDGIYI  423 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC---CCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence            3568999999999999999999999999999999999999888887776   568888888875332  66789999988


Q ss_pred             ccccccCCCh--------HHHHHHHHHhccCCcEEEEEEec
Q 019957          244 GAALHCWPSP--------SNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       244 ~~vl~h~~d~--------~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ++-=-|....        ..+++.+.++|||||.+.+.|-.
T Consensus       424 ~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~  464 (506)
T PRK01544        424 LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI  464 (506)
T ss_pred             ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence            6543222111        37899999999999999998843

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.91  E-value=1.2e-08  Score=90.88  Aligned_cols=88  Identities=16%  Similarity=0.276  Sum_probs=72.6

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      .....+.+.+.+...++.+|||||||+|.++..+.+.+.  +++++|+++.+++.+++++..     ..++.++.+|+.+
T Consensus        14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~~   86 (258)
T PRK14896         14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDALK   86 (258)
T ss_pred             CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhcc-----CCCEEEEEecccc
Confidence            345566777777767788999999999999999999864  899999999999999987654     3579999999998


Q ss_pred             CCCCCCCcceEEecccc
Q 019957          231 LPFASGFVDAVHAGAAL  247 (333)
Q Consensus       231 lp~~~~~fD~V~~~~vl  247 (333)
                      ++++  .||.|+++--.
T Consensus        87 ~~~~--~~d~Vv~NlPy  101 (258)
T PRK14896         87 VDLP--EFNKVVSNLPY  101 (258)
T ss_pred             CCch--hceEEEEcCCc
Confidence            8764  58999886543

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.90  E-value=6.7e-09  Score=90.56  Aligned_cols=107  Identities=25%  Similarity=0.439  Sum_probs=83.6

Q ss_pred             HHHHhhccc-CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          157 MAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       157 ~~~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      +..+++... .+..+||+|||.|-++..    .|..-++|.|.+...+..+++         ........+|+..+|+.+
T Consensus        35 ~v~qfl~~~~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~---------~~~~~~~~ad~l~~p~~~  101 (293)
T KOG1331|consen   35 MVRQFLDSQPTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKR---------SGGDNVCRADALKLPFRE  101 (293)
T ss_pred             HHHHHHhccCCcceeeecccCCcccCcC----CCcceeeecchhhhhcccccc---------CCCceeehhhhhcCCCCC
Confidence            334444433 367899999999965432    255679999999988887775         222267889999999999


Q ss_pred             CCcceEEeccccccCCCh---HHHHHHHHHhccCCcEEEEEEec
Q 019957          236 GFVDAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      .+||.+++..|+||+...   ..+++++.++|+|||..++....
T Consensus       102 ~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa  145 (293)
T KOG1331|consen  102 ESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWA  145 (293)
T ss_pred             CccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence            999999999999999654   57899999999999997776654

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.88  E-value=3.3e-08  Score=89.85  Aligned_cols=146  Identities=10%  Similarity=0.086  Sum_probs=90.9

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-CcCCCCCeEEEE-ccCCCCC----CCCCCcc
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVR-ADVCRLP----FASGFVD  239 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~~~i~~~~-~d~~~lp----~~~~~fD  239 (333)
                      .+.++||||||+|.....+....+..+++|+|+++.+++.|++++..+ ++  ..++.++. .|...+.    ..++.||
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l--~~~I~~~~~~~~~~i~~~i~~~~~~fD  191 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL--NGAIRLRLQKDSKAIFKGIIHKNERFD  191 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC--cCcEEEEEccchhhhhhcccccCCceE
Confidence            457899999999988887777655679999999999999999999987 55  55777754 3333221    2356899


Q ss_pred             eEEeccccccCCCh-----HHHHHHH----------------HHhccCCcEEEEEEecccCCCcchhhHHHHHhhh----
Q 019957          240 AVHAGAALHCWPSP-----SNAVAEI----------------SRILRSGGVFVGTTFLRYTSSTSLTGRVLRERIL----  294 (333)
Q Consensus       240 ~V~~~~vl~h~~d~-----~~~l~~~----------------~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~----  294 (333)
                      +|+|+=-++.-.+.     ..-.+.+                .+++.+||.+-+.......      ...+.....    
T Consensus       192 livcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~e------S~~~~~~~gwfts  265 (321)
T PRK11727        192 ATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEE------SKAFAKQVLWFTS  265 (321)
T ss_pred             EEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHH------HHHHHhhCcEEEE
Confidence            99997554432211     1112222                2334466665554432210      000111000    


Q ss_pred             ccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957          295 QNYNYLTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       295 ~~~~~~t~~~l~~ll~~aGf~~v~~  319 (333)
                      -....-+.+.+.+.|++.|...+++
T Consensus       266 mv~kk~~l~~l~~~L~~~~~~~~~~  290 (321)
T PRK11727        266 LVSKKENLPPLYRALKKVGAVEVKT  290 (321)
T ss_pred             EeeccCCHHHHHHHHHHcCCceEEE
Confidence            1111236789999999999966554

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=2.3e-08  Score=82.21  Aligned_cols=121  Identities=19%  Similarity=0.190  Sum_probs=87.2

Q ss_pred             cccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEE
Q 019957          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (333)
                      ....+.+|+|+|||||.++...+-.| ...|+|+|+++++++.++++.++.    ..++.++.+|+.++.   ..+|.++
T Consensus        42 g~l~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~l----~g~v~f~~~dv~~~~---~~~dtvi  113 (198)
T COG2263          42 GDLEGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEEL----LGDVEFVVADVSDFR---GKFDTVI  113 (198)
T ss_pred             CCcCCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHhh----CCceEEEEcchhhcC---CccceEE
Confidence            34567789999999999999999888 458999999999999999998873    568999999999874   6789888


Q ss_pred             eccc----cccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEE
Q 019957          243 AGAA----LHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT  318 (333)
Q Consensus       243 ~~~v----l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~  318 (333)
                      ++--    ..| .|. .+|..+.+.-    .++.+-.                      ..-+.+-+++..+.+|+.+..
T Consensus       114 mNPPFG~~~rh-aDr-~Fl~~Ale~s----~vVYsiH----------------------~a~~~~f~~~~~~~~G~~v~~  165 (198)
T COG2263         114 MNPPFGSQRRH-ADR-PFLLKALEIS----DVVYSIH----------------------KAGSRDFVEKFAADLGGTVTH  165 (198)
T ss_pred             ECCCCcccccc-CCH-HHHHHHHHhh----heEEEee----------------------ccccHHHHHHHHHhcCCeEEE
Confidence            8533    234 333 3444444432    1111111                      112567788888899987765


Q ss_pred             E
Q 019957          319 S  319 (333)
Q Consensus       319 ~  319 (333)
                      .
T Consensus       166 ~  166 (198)
T COG2263         166 I  166 (198)
T ss_pred             E
Confidence            4

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.88  E-value=1.1e-08  Score=92.29  Aligned_cols=88  Identities=15%  Similarity=0.250  Sum_probs=72.7

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      .....+.+.+.+...++.+|||||||+|.++..+.+.+.  +++++|+++.+++.+++++...+.  ..++.++.+|+.+
T Consensus        21 d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~--~~~v~ii~~Dal~   96 (294)
T PTZ00338         21 NPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPL--ASKLEVIEGDALK   96 (294)
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCC--CCcEEEEECCHhh
Confidence            344566777777777788999999999999999998865  899999999999999998876543  4689999999987


Q ss_pred             CCCCCCCcceEEec
Q 019957          231 LPFASGFVDAVHAG  244 (333)
Q Consensus       231 lp~~~~~fD~V~~~  244 (333)
                      .+++  .||+|+++
T Consensus        97 ~~~~--~~d~VvaN  108 (294)
T PTZ00338         97 TEFP--YFDVCVAN  108 (294)
T ss_pred             hccc--ccCEEEec
Confidence            7643  68988875

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.87  E-value=1.4e-08  Score=91.13  Aligned_cols=87  Identities=11%  Similarity=0.185  Sum_probs=69.9

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      .....+.+.+.+...++.+|||||||+|.++..+++.++  +++|+|+++.+++.+++++.      ..++.++.+|+.+
T Consensus        27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~------~~~v~~i~~D~~~   98 (272)
T PRK00274         27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA------EDNLTIIEGDALK   98 (272)
T ss_pred             CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc------cCceEEEEChhhc
Confidence            344556777777777788999999999999999999976  99999999999999988653      2479999999998


Q ss_pred             CCCCCCCcceEEecc
Q 019957          231 LPFASGFVDAVHAGA  245 (333)
Q Consensus       231 lp~~~~~fD~V~~~~  245 (333)
                      +++.+-.+|.|+++-
T Consensus        99 ~~~~~~~~~~vv~Nl  113 (272)
T PRK00274         99 VDLSELQPLKVVANL  113 (272)
T ss_pred             CCHHHcCcceEEEeC
Confidence            876532257777653

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.86  E-value=1.1e-08  Score=94.43  Aligned_cols=143  Identities=27%  Similarity=0.365  Sum_probs=109.4

Q ss_pred             HHHHhhHHhhcccCCCCCcHHHHHHH------HHh-hcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHH
Q 019957          133 FLYERGWRQNFNRSGFPGPDEEFKMA------QEY-FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQ  205 (333)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~  205 (333)
                      ..|.+.|.+.++-..++.........      ..+ ....++..++|+|||.|.....+.... ...++|+|.++..+..
T Consensus        70 dl~~~~w~~~~h~~~~~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~  148 (364)
T KOG1269|consen   70 DLYERNWGQSFHFGRIPEGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFR  148 (364)
T ss_pred             hhhhhhhccchhccCccchhHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHH
Confidence            44667777776665553332221111      111 112456689999999999999888765 5689999999998888


Q ss_pred             HHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957          206 CYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       206 a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      +.......++  .....++.+|+...|++++.||.+.+..+..|.+++..+++|+.|++||||+++..+....
T Consensus       149 ~~~~~~~~~l--~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~  219 (364)
T KOG1269|consen  149 ANELAKKAYL--DNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKT  219 (364)
T ss_pred             HHHHHHHHHh--hhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHh
Confidence            8887766665  3445558899999999999999999999999999999999999999999999999776553

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.86  E-value=2.3e-08  Score=95.19  Aligned_cols=102  Identities=15%  Similarity=0.245  Sum_probs=75.4

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhC----CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEE
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSG----TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~----~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (333)
                      +..|||||||+|-++....+.+    ...+|+++|-++.+....+++++.++.  ..+|+++.+|++++..+ .++|+|+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w--~~~V~vi~~d~r~v~lp-ekvDIIV  263 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW--GDKVTVIHGDMREVELP-EKVDIIV  263 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT--TTTEEEEES-TTTSCHS-S-EEEEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC--CCeEEEEeCcccCCCCC-CceeEEE
Confidence            5689999999999987776654    346999999999988888777677764  68899999999998754 4899999


Q ss_pred             ec--cccccCCChHHHHHHHHHhccCCcEEE
Q 019957          243 AG--AALHCWPSPSNAVAEISRILRSGGVFV  271 (333)
Q Consensus       243 ~~--~vl~h~~d~~~~l~~~~r~LkpgG~l~  271 (333)
                      +-  +.+-.-.-....|....+.|||||.++
T Consensus       264 SElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  264 SELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             E---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             EeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            82  222211223467889999999998865

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.85  E-value=5.5e-08  Score=86.33  Aligned_cols=86  Identities=12%  Similarity=0.224  Sum_probs=69.7

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      .....+.+.+.+...++.+|||||||+|.++..+.+.++  .++++|+++.+++.+++++..     ..++.++.+|+..
T Consensus        14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~   86 (253)
T TIGR00755        14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALK   86 (253)
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhc
Confidence            445566777777777788999999999999999999986  799999999999999887643     3579999999998


Q ss_pred             CCCCCCCcc---eEEecc
Q 019957          231 LPFASGFVD---AVHAGA  245 (333)
Q Consensus       231 lp~~~~~fD---~V~~~~  245 (333)
                      +++.  ++|   +|+++-
T Consensus        87 ~~~~--~~d~~~~vvsNl  102 (253)
T TIGR00755        87 VDLP--DFPKQLKVVSNL  102 (253)
T ss_pred             CChh--HcCCcceEEEcC
Confidence            8764  466   565543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.85  E-value=2.8e-08  Score=88.98  Aligned_cols=108  Identities=13%  Similarity=0.199  Sum_probs=79.2

Q ss_pred             CCeEEEEcCCcCH--H--HHHHHHhC----CCCeEEEEeCCHHHHHHHHHHH------------------Hh-----cC-
Q 019957          167 GGLLVDVSCGSGL--F--SRKFAKSG----TYSGVVALDFSENMLRQCYDFI------------------KQ-----DN-  214 (333)
Q Consensus       167 ~~~vLDiGcG~G~--~--~~~l~~~~----~~~~v~g~D~s~~~~~~a~~~~------------------~~-----~~-  214 (333)
                      .-+|+..||+||.  +  +..+.+.+    ...+++|+|+|+.+++.|++-.                  ..     .+ 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            3689999999994  2  23333322    1358999999999999998742                  00     00 


Q ss_pred             --c--CCCCCeEEEEccCCCCCCC-CCCcceEEeccccccCCC--hHHHHHHHHHhccCCcEEEEEE
Q 019957          215 --T--ILTSNLALVRADVCRLPFA-SGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       215 --~--~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                        +  .-...+.|.+.|+.+.+++ .+.||+|+|.+++.|+.+  ..++++.+.+.|+|||+|++..
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence              0  0124578899999775433 578999999999999965  4689999999999999987744

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.84  E-value=3.7e-08  Score=92.29  Aligned_cols=111  Identities=12%  Similarity=0.144  Sum_probs=81.3

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC-C
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-A  234 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~  234 (333)
                      ..+.+++...++.+|||+|||+|.++..++..+.  +|+|+|+++.+++.|+++++.++   ..++.++.+|+.+... .
T Consensus       223 ~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~--~v~~vE~~~~av~~a~~N~~~~~---~~~~~~~~~d~~~~~~~~  297 (374)
T TIGR02085       223 ATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT--QLTGIEIESEAIACAQQSAQMLG---LDNLSFAALDSAKFATAQ  297 (374)
T ss_pred             HHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC--eEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHHHHhc
Confidence            3344444434567999999999999999997654  89999999999999999998877   3489999999966421 1


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      .++||+|++.=--..  -...+++.+. .++|++.++++.
T Consensus       298 ~~~~D~vi~DPPr~G--~~~~~l~~l~-~~~p~~ivyvsc  334 (374)
T TIGR02085       298 MSAPELVLVNPPRRG--IGKELCDYLS-QMAPKFILYSSC  334 (374)
T ss_pred             CCCCCEEEECCCCCC--CcHHHHHHHH-hcCCCeEEEEEe
Confidence            246999988533211  1134555554 478999888876

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.82  E-value=4.1e-08  Score=91.82  Aligned_cols=112  Identities=16%  Similarity=0.193  Sum_probs=85.8

Q ss_pred             HHHHHhhccc-CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957          156 KMAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (333)
Q Consensus       156 ~~~~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (333)
                      ..+.+.+... ++.+|||++||+|.++..++.......|+++|+++.+++.++++++.++   ..++.++.+|+..+...
T Consensus        46 ~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~---~~~~~v~~~Da~~~l~~  122 (382)
T PRK04338         46 VLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG---LENEKVFNKDANALLHE  122 (382)
T ss_pred             HHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCceEEEhhhHHHHHhh
Confidence            3444444322 3468999999999999999876544589999999999999999998877   44677899998664321


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      .+.||+|++.- .   ..+..++..+.+.+++||+++++.
T Consensus       123 ~~~fD~V~lDP-~---Gs~~~~l~~al~~~~~~gilyvSA  158 (382)
T PRK04338        123 ERKFDVVDIDP-F---GSPAPFLDSAIRSVKRGGLLCVTA  158 (382)
T ss_pred             cCCCCEEEECC-C---CCcHHHHHHHHHHhcCCCEEEEEe
Confidence            45799999853 1   445778888788899999999983

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=3.8e-07  Score=74.37  Aligned_cols=131  Identities=18%  Similarity=0.250  Sum_probs=95.9

Q ss_pred             hcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcce
Q 019957          162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA  240 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~  240 (333)
                      +.......+||||||+|..+..++.. +++..+.++|+++.+++.-.+.++.++    .++..++.|+..-- ..++.|+
T Consensus        39 L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~----~~~~~V~tdl~~~l-~~~~VDv  113 (209)
T KOG3191|consen   39 LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR----VHIDVVRTDLLSGL-RNESVDV  113 (209)
T ss_pred             HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC----CccceeehhHHhhh-ccCCccE
Confidence            33334678999999999999888876 667789999999999988887776653    46889999986532 2489999


Q ss_pred             EEecccccc-----C------------CC----hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCC
Q 019957          241 VHAGAALHC-----W------------PS----PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNY  299 (333)
Q Consensus       241 V~~~~vl~h-----~------------~d----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (333)
                      ++.+--..-     +            .+    ..+++..+-.+|.|.|++++......                     
T Consensus       114 LvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N---------------------  172 (209)
T KOG3191|consen  114 LVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN---------------------  172 (209)
T ss_pred             EEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc---------------------
Confidence            987532211     1            01    13456667788899999999875432                     


Q ss_pred             CCHHHHHHHHHhCCCcEEEE
Q 019957          300 LTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       300 ~t~~~l~~ll~~aGf~~v~~  319 (333)
                       .++++-++++.-||.....
T Consensus       173 -~p~ei~k~l~~~g~~~~~~  191 (209)
T KOG3191|consen  173 -KPKEILKILEKKGYGVRIA  191 (209)
T ss_pred             -CHHHHHHHHhhcccceeEE
Confidence             3568888999999976553

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=6.2e-08  Score=80.69  Aligned_cols=114  Identities=25%  Similarity=0.335  Sum_probs=85.9

Q ss_pred             HHHHHhhc--ccCCCeEEEEcCCcCHHHHHHHHh-C-CCCeEEEEeCCHHHHHHHHHHHHhcC-------cCCCCCeEEE
Q 019957          156 KMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKS-G-TYSGVVALDFSENMLRQCYDFIKQDN-------TILTSNLALV  224 (333)
Q Consensus       156 ~~~~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~~v~g~D~s~~~~~~a~~~~~~~~-------~~~~~~i~~~  224 (333)
                      ..+.++|.  ..++.++||+|.|+|+++..++.. + +....+|+|.-++.++.+++++...-       .....++.++
T Consensus        70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv  149 (237)
T KOG1661|consen   70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV  149 (237)
T ss_pred             HHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence            33444444  457899999999999999888754 2 23355999999999999999886542       0124578889


Q ss_pred             EccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          225 RADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       225 ~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      .+|....-.+...||.|.+...      ..+..+++...|++||.+++...
T Consensus       150 vGDgr~g~~e~a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip~~  194 (237)
T KOG1661|consen  150 VGDGRKGYAEQAPYDAIHVGAA------ASELPQELLDQLKPGGRLLIPVG  194 (237)
T ss_pred             eCCccccCCccCCcceEEEccC------ccccHHHHHHhhccCCeEEEeec
Confidence            9998877666789999999854      34456778888999999998654

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=4.7e-07  Score=78.38  Aligned_cols=111  Identities=22%  Similarity=0.397  Sum_probs=94.5

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      +.+|..++...|+.+|||-|+|+|.++.++++. +|...++-+|+.+...+.|++.+++.++  ..++++..-|+...-|
T Consensus        94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi--~~~vt~~hrDVc~~GF  171 (314)
T KOG2915|consen   94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI--GDNVTVTHRDVCGSGF  171 (314)
T ss_pred             HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC--CcceEEEEeecccCCc
Confidence            467888888899999999999999999999887 6777999999999999999999999986  8899999999976543


Q ss_pred             --CCCCcceEEeccccccCCChHHHHHHHHHhccCCcE-EEE
Q 019957          234 --ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGV-FVG  272 (333)
Q Consensus       234 --~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~-l~i  272 (333)
                        ++..+|.|++.     ++.|..++--+..+||.+|. |+-
T Consensus       172 ~~ks~~aDaVFLD-----lPaPw~AiPha~~~lk~~g~r~cs  208 (314)
T KOG2915|consen  172 LIKSLKADAVFLD-----LPAPWEAIPHAAKILKDEGGRLCS  208 (314)
T ss_pred             cccccccceEEEc-----CCChhhhhhhhHHHhhhcCceEEe
Confidence              46788888764     57888888889999998774 443

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.75  E-value=2.3e-07  Score=78.51  Aligned_cols=107  Identities=16%  Similarity=0.139  Sum_probs=77.6

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-C-C-CCC-Ccce
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-F-ASG-FVDA  240 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~-~~~-~fD~  240 (333)
                      ..+.+|||++||+|.++..+..++. ..|+++|.++.+++.++++++..+.  ..++.++.+|+... . + ... .||+
T Consensus        48 ~~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~--~~~~~~~~~D~~~~l~~~~~~~~~~dv  124 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKS--GEQAEVVRNSALRALKFLAKKPTFDNV  124 (189)
T ss_pred             cCCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCC--cccEEEEehhHHHHHHHhhccCCCceE
Confidence            3577999999999999999999874 5899999999999999999888764  34789999999442 2 1 122 4788


Q ss_pred             EEeccccccCCChHHHHHHHH--HhccCCcEEEEEEe
Q 019957          241 VHAGAALHCWPSPSNAVAEIS--RILRSGGVFVGTTF  275 (333)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~--r~LkpgG~l~i~~~  275 (333)
                      |+..=-... .....++..+.  .+|+++|.+++...
T Consensus       125 v~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~  160 (189)
T TIGR00095       125 IYLDPPFFN-GALQALLELCENNWILEDTVLIVVEED  160 (189)
T ss_pred             EEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            877433221 22344455443  36888898887654

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.74  E-value=4.7e-08  Score=82.87  Aligned_cols=109  Identities=16%  Similarity=0.170  Sum_probs=69.6

Q ss_pred             CCCeEEEEcCCcCH----HHHHHHHh-----CCCCeEEEEeCCHHHHHHHHHHH----HhcCc-----------------
Q 019957          166 QGGLLVDVSCGSGL----FSRKFAKS-----GTYSGVVALDFSENMLRQCYDFI----KQDNT-----------------  215 (333)
Q Consensus       166 ~~~~vLDiGcG~G~----~~~~l~~~-----~~~~~v~g~D~s~~~~~~a~~~~----~~~~~-----------------  215 (333)
                      +.-+|+.+||++|.    ++..+.+.     ....+++|+|+|+.+++.|++-.    .-.++                 
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            45689999999994    23333331     11458999999999999998632    00000                 


Q ss_pred             ----CCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEE
Q 019957          216 ----ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       216 ----~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~  274 (333)
                          .-..++.|...|+.+.+...+.||+|+|.+||-++...  .++++.+.+.|+|||+|++..
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence                01246899999998843346799999999999999766  589999999999999999954

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.74  E-value=1.4e-07  Score=79.13  Aligned_cols=98  Identities=15%  Similarity=0.198  Sum_probs=82.6

Q ss_pred             eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccc
Q 019957          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH  248 (333)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~  248 (333)
                      +++|||+|.|.=+..++-..|+.+++.+|.+..-+.+.+......+   ..|+.++.+.+++ +....+||+|++..+  
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~---L~nv~v~~~R~E~-~~~~~~fd~v~aRAv--  124 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG---LSNVEVINGRAEE-PEYRESFDVVTARAV--  124 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEEES-HHH-TTTTT-EEEEEEESS--
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC---CCCEEEEEeeecc-cccCCCccEEEeehh--
Confidence            7999999999999999988898999999999998888888877777   5689999999988 444679999999887  


Q ss_pred             cCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          249 CWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       249 h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                        .....++.-+...+++||.+++.-
T Consensus       125 --~~l~~l~~~~~~~l~~~G~~l~~K  148 (184)
T PF02527_consen  125 --APLDKLLELARPLLKPGGRLLAYK  148 (184)
T ss_dssp             --SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             --cCHHHHHHHHHHhcCCCCEEEEEc
Confidence              456788888999999999998865

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.74  E-value=6.3e-08  Score=82.15  Aligned_cols=100  Identities=21%  Similarity=0.328  Sum_probs=75.5

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++.+|||+.||.|.++..+++.+....|+++|++|.+++..+++++.+++  ...+..+.+|..++.. .+.||-|++.
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv--~~~i~~~~~D~~~~~~-~~~~drvim~  176 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV--ENRIEVINGDAREFLP-EGKFDRVIMN  176 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT---TTTEEEEES-GGG----TT-EEEEEE-
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC--CCeEEEEcCCHHHhcC-ccccCEEEEC
Confidence            457899999999999999999966566899999999999999999999987  6779999999988764 7799999886


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEE
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFV  271 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~  271 (333)
                      ..    .....+|..+.+++++||.+-
T Consensus       177 lp----~~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  177 LP----ESSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             -T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred             Ch----HHHHHHHHHHHHHhcCCcEEE
Confidence            42    223467899999999999863

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK04148 hypothetical protein; Provisional

Probab=98.73  E-value=2e-07  Score=73.40  Aligned_cols=106  Identities=12%  Similarity=0.179  Sum_probs=76.4

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCcCH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          155 FKMAQEYFKSAQGGLLVDVSCGSGL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       155 ~~~~~~~l~~~~~~~vLDiGcG~G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      .+.+.+.+...++.+|||||||+|. ++..|.+.|.  +|+++|+++..++.++++          .+.++.+|+.+..+
T Consensus         5 ~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~----------~~~~v~dDlf~p~~   72 (134)
T PRK04148          5 AEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKL----------GLNAFVDDLFNPNL   72 (134)
T ss_pred             HHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHh----------CCeEEECcCCCCCH
Confidence            3555565655556789999999996 8888888776  999999999998888763          46899999987653


Q ss_pred             C-CCCcceEEeccccccCCChHHHHHHHHHhcc-CCcEEEEEEeccc
Q 019957          234 A-SGFVDAVHAGAALHCWPSPSNAVAEISRILR-SGGVFVGTTFLRY  278 (333)
Q Consensus       234 ~-~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~  278 (333)
                      . -+.+|+|.+..-      |.++..-+.++-+ -|.-+++.....+
T Consensus        73 ~~y~~a~liysirp------p~el~~~~~~la~~~~~~~~i~~l~~e  113 (134)
T PRK04148         73 EIYKNAKLIYSIRP------PRDLQPFILELAKKINVPLIIKPLSGE  113 (134)
T ss_pred             HHHhcCCEEEEeCC------CHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence            3 357899988653      4454555555554 3566777665443

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.72  E-value=2.1e-07  Score=81.58  Aligned_cols=158  Identities=20%  Similarity=0.196  Sum_probs=92.0

Q ss_pred             HHHHHhhccc-CCCeEEEEcCCc---CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          156 KMAQEYFKSA-QGGLLVDVSCGS---GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       156 ~~~~~~l~~~-~~~~vLDiGcG~---G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      .+..+++... .-...||||||-   |..-....+..|+++|+.+|+++-.+..++..+....   .....++++|+.+.
T Consensus        57 ~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~---~g~t~~v~aD~r~p  133 (267)
T PF04672_consen   57 RRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP---RGRTAYVQADLRDP  133 (267)
T ss_dssp             HHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T---TSEEEEEE--TT-H
T ss_pred             HHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC---CccEEEEeCCCCCH
Confidence            3444444444 345799999995   3444444445788999999999999999999887732   12389999999774


Q ss_pred             C------CCCCCcc-----eEEeccccccCCC---hHHHHHHHHHhccCCcEEEEEEecccCCCcc-hhhHHHHHhhhcc
Q 019957          232 P------FASGFVD-----AVHAGAALHCWPS---PSNAVAEISRILRSGGVFVGTTFLRYTSSTS-LTGRVLRERILQN  296 (333)
Q Consensus       232 p------~~~~~fD-----~V~~~~vl~h~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~  296 (333)
                      .      -..+-+|     .|++..+|||++|   |..+++.++..|.||.+|+++-......... .............
T Consensus       134 ~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~  213 (267)
T PF04672_consen  134 EAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSP  213 (267)
T ss_dssp             HHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS-
T ss_pred             HHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCC
Confidence            2      1123344     5788999999964   7899999999999999999988765421111 0111122233456


Q ss_pred             CCCCCHHHHHHHHHhCCCcEEE
Q 019957          297 YNYLTEEEIEDLCTSCGLTNYT  318 (333)
Q Consensus       297 ~~~~t~~~l~~ll~~aGf~~v~  318 (333)
                      ....|.+++..+|.  ||+.++
T Consensus       214 ~~~Rs~~ei~~~f~--g~elve  233 (267)
T PF04672_consen  214 GRPRSREEIAAFFD--GLELVE  233 (267)
T ss_dssp             ---B-HHHHHHCCT--TSEE-T
T ss_pred             ceecCHHHHHHHcC--CCccCC
Confidence            77889999999998  787654

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.70  E-value=2.4e-08  Score=87.55  Aligned_cols=158  Identities=18%  Similarity=0.199  Sum_probs=96.9

Q ss_pred             CCCeEEEEcCCcCHH-HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc-------------CC------------CC
Q 019957          166 QGGLLVDVSCGSGLF-SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-------------IL------------TS  219 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~-~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-------------~~------------~~  219 (333)
                      ++.++||||||.--+ +..+.+...  +++..|.++...+..++.++..+.             +.            ..
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~f~--~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEWFE--EIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGTEE--EEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHhhc--ceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            466899999998543 222333333  899999999988877776654321             00            01


Q ss_pred             Ce-EEEEccCCCCC-CCC-----CCcceEEeccccccCC-Ch---HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHH
Q 019957          220 NL-ALVRADVCRLP-FAS-----GFVDAVHAGAALHCWP-SP---SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV  288 (333)
Q Consensus       220 ~i-~~~~~d~~~lp-~~~-----~~fD~V~~~~vl~h~~-d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~  288 (333)
                      .+ .++.+|+.+.+ +..     .+||+|++..+|+-.. |.   ..+++.+.++|||||.|++......... ..    
T Consensus       134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y-~v----  208 (256)
T PF01234_consen  134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYY-MV----  208 (256)
T ss_dssp             HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEE-EE----
T ss_pred             hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeE-EE----
Confidence            12 47778986643 332     3599999999999764 44   4679999999999999999886542110 00    


Q ss_pred             HHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEE------eCeEEEEEEeC
Q 019957          289 LRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV------QQSFIMFAAQK  332 (333)
Q Consensus       289 ~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~------~~~~~~~~a~k  332 (333)
                        +...-+...++++.+++.++++||.+.+...      ......++|+|
T Consensus       209 --G~~~F~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K  256 (256)
T PF01234_consen  209 --GGHKFPCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK  256 (256)
T ss_dssp             --TTEEEE---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred             --CCEecccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence              1111234468899999999999999887543      12235556665

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.69  E-value=8.4e-09  Score=85.47  Aligned_cols=113  Identities=17%  Similarity=0.141  Sum_probs=82.3

Q ss_pred             cHHHHHHHHHhhcc---cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc
Q 019957          151 PDEEFKMAQEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (333)
Q Consensus       151 ~~~~~~~~~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (333)
                      .++..+.++..-++   ..+.++||+|+|.|..+..++..+.  +|++.|.|..|..+.+++          +..++.  
T Consensus        94 Se~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk----------~ynVl~--  159 (288)
T KOG3987|consen   94 SEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK----------NYNVLT--  159 (288)
T ss_pred             cHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc----------CCceee--
Confidence            34444444433322   2356899999999999999998765  899999999998877763          122221  


Q ss_pred             CCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccC-CcEEEEEEecc
Q 019957          228 VCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRS-GGVFVGTTFLR  277 (333)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkp-gG~l~i~~~~~  277 (333)
                      ..+..-.+-+||+|.|..+|...-+|-++|+.++.+|+| +|++++.-...
T Consensus       160 ~~ew~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP  210 (288)
T KOG3987|consen  160 EIEWLQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLP  210 (288)
T ss_pred             ehhhhhcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEec
Confidence            111111244799999999999999999999999999999 89888765443

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.69  E-value=3e-07  Score=87.98  Aligned_cols=118  Identities=17%  Similarity=0.160  Sum_probs=90.6

Q ss_pred             HHHhh--cccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-C
Q 019957          158 AQEYF--KSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F  233 (333)
Q Consensus       158 ~~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~  233 (333)
                      ....+  .+.++.+|||+++|.|.-+..++... ....+++.|+++..++..++++++.|   ..++.+...|...+. .
T Consensus       103 ~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G---~~nv~v~~~D~~~~~~~  179 (470)
T PRK11933        103 PVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG---VSNVALTHFDGRVFGAA  179 (470)
T ss_pred             HHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCchhhhhhh
Confidence            34445  66788999999999999998888874 23589999999999999999999988   567888888887653 2


Q ss_pred             CCCCcceEEe----c--cccccCCCh----------------HHHHHHHHHhccCCcEEEEEEeccc
Q 019957          234 ASGFVDAVHA----G--AALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       234 ~~~~fD~V~~----~--~vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      ..+.||.|+.    +  +++.+-++.                .++|..+.+.|||||+|+.+|-...
T Consensus       180 ~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~  246 (470)
T PRK11933        180 LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN  246 (470)
T ss_pred             chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence            2457999994    3  333332211                4678899999999999999886543

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.67  E-value=2e-07  Score=86.58  Aligned_cols=109  Identities=18%  Similarity=0.186  Sum_probs=86.8

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-C---CCCCCcceEE
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P---FASGFVDAVH  242 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p---~~~~~fD~V~  242 (333)
                      +++|||+-|=||.++..++..| ..+|+.+|.|...++.|+++++.+|+. ...+.++++|+.+. .   -...+||+|+
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~-~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi  295 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLD-GDRHRFIVGDVFKWLRKAERRGEKFDLII  295 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCC-ccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence            7899999999999999999876 569999999999999999999999862 45689999999653 2   2345999999


Q ss_pred             ecc---------ccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          243 AGA---------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       243 ~~~---------vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      +.-         ...-..+-..++..+.++|+|||.+++.+...
T Consensus       296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            721         11111233567889999999999999988654

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.65  E-value=4.6e-07  Score=84.51  Aligned_cols=111  Identities=14%  Similarity=0.190  Sum_probs=77.6

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-  231 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-  231 (333)
                      .+.+.+.+++... +.+|||++||+|.++..+++...  +|+|+|.++.+++.+++++..++   ..++.++.+|+.+. 
T Consensus       194 ~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~---~~~v~~~~~d~~~~l  267 (362)
T PRK05031        194 KMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANG---IDNVQIIRMSAEEFT  267 (362)
T ss_pred             HHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhC---CCcEEEEECCHHHHH
Confidence            3445555555432 35799999999999998888764  89999999999999999998877   45899999998653 


Q ss_pred             C-CC--------------CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          232 P-FA--------------SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       232 p-~~--------------~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      + +.              ..+||+|+..=--  ..-..++++.+.   +++++++++.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~~~~l~~l~---~~~~ivyvSC  320 (362)
T PRK05031        268 QAMNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLDDETLKLVQ---AYERILYISC  320 (362)
T ss_pred             HHHhhcccccccccccccCCCCCEEEECCCC--CCCcHHHHHHHH---ccCCEEEEEe
Confidence            1 10              1258999873220  011134444444   4778777766

>PLN02823 spermine synthase

Probab=98.65  E-value=2.3e-07  Score=85.07  Aligned_cols=108  Identities=17%  Similarity=0.208  Sum_probs=81.2

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-cCCCCCeEEEEccCCCC-CCCCCCcceEEe
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL-PFASGFVDAVHA  243 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~  243 (333)
                      .+.+||.||+|.|..+..+.+..+..+++.+|+++.+++.+++.+...+ ....++++++.+|.... ...+++||+|++
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            3568999999999999998886555689999999999999999875421 11157899999998653 334578999998


Q ss_pred             ccccccC-CC------hHHHHH-HHHHhccCCcEEEEEE
Q 019957          244 GAALHCW-PS------PSNAVA-EISRILRSGGVFVGTT  274 (333)
Q Consensus       244 ~~vl~h~-~d------~~~~l~-~~~r~LkpgG~l~i~~  274 (333)
                      ... ... ..      ...+++ .+.+.|+|||++++..
T Consensus       183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence            632 111 01      135677 8999999999988753

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.64  E-value=2e-07  Score=82.82  Aligned_cols=105  Identities=17%  Similarity=0.254  Sum_probs=79.8

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (333)
                      ...+..|||+|||+|-++...+..| ..+|+++|. .+|.++|++.++.+++  ..+|.++.|-++++.++ ++.|+|++
T Consensus       175 DF~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEA-S~MAqyA~~Lv~~N~~--~~rItVI~GKiEdieLP-Ek~DviIS  249 (517)
T KOG1500|consen  175 DFQDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEA-SEMAQYARKLVASNNL--ADRITVIPGKIEDIELP-EKVDVIIS  249 (517)
T ss_pred             ccCCcEEEEecCCccHHHHHHHHhC-cceEEEEeh-hHHHHHHHHHHhcCCc--cceEEEccCccccccCc-hhccEEEe
Confidence            3467889999999999999999888 568999996 4589999999988876  88999999999988764 58999997


Q ss_pred             ccccccCCCh--HHHHHHHHHhccCCcEEEEE
Q 019957          244 GAALHCWPSP--SNAVAEISRILRSGGVFVGT  273 (333)
Q Consensus       244 ~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~  273 (333)
                      --.=.-+-+.  .+..-.+++.|||.|..+=+
T Consensus       250 EPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT  281 (517)
T KOG1500|consen  250 EPMGYMLVNERMLESYLHARKWLKPNGKMFPT  281 (517)
T ss_pred             ccchhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence            3221111111  12233456999999987643

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=7.4e-08  Score=75.46  Aligned_cols=87  Identities=18%  Similarity=0.351  Sum_probs=69.8

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      ..|.+-.....+.+++|+|||.|.++....-.. ...++|+|+++.+++.+.+++++.    .-+++++++|+.++.+..
T Consensus        38 ~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~-~e~vlGfDIdpeALEIf~rNaeEf----EvqidlLqcdildle~~~  112 (185)
T KOG3420|consen   38 YTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK-NESVLGFDIDPEALEIFTRNAEEF----EVQIDLLQCDILDLELKG  112 (185)
T ss_pred             HHHHhhhccccCcchhhhcCchhhhHHHhhcCC-CceEEeeecCHHHHHHHhhchHHh----hhhhheeeeeccchhccC
Confidence            334444455678899999999999996555443 458999999999999999988876    447899999999988888


Q ss_pred             CCcceEEecccc
Q 019957          236 GFVDAVHAGAAL  247 (333)
Q Consensus       236 ~~fD~V~~~~vl  247 (333)
                      +.||.++.+--+
T Consensus       113 g~fDtaviNppF  124 (185)
T KOG3420|consen  113 GIFDTAVINPPF  124 (185)
T ss_pred             CeEeeEEecCCC
Confidence            999999986544

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.61  E-value=5.6e-07  Score=80.65  Aligned_cols=116  Identities=18%  Similarity=0.099  Sum_probs=75.0

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC-CCCCC
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-RLPFA  234 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~-~lp~~  234 (333)
                      .+...++...+.+|||+|+|+|..+..+.+..+ ..+++++|.|+.|++.++..+.....  .....+...... ..++.
T Consensus        24 El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~  101 (274)
T PF09243_consen   24 ELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN--NRNAEWRRVLYRDFLPFP  101 (274)
T ss_pred             HHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc--cccchhhhhhhcccccCC
Confidence            333344445677999999999988877776643 34799999999999999987765321  111111111111 12222


Q ss_pred             CCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEeccc
Q 019957          235 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                        ..|+|++.++|..+++.  ..+++.+.+.+.  +.|+++++..+
T Consensus       102 --~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~--~~LVlVEpGt~  143 (274)
T PF09243_consen  102 --PDDLVIASYVLNELPSAARAELVRSLWNKTA--PVLVLVEPGTP  143 (274)
T ss_pred             --CCcEEEEehhhhcCCchHHHHHHHHHHHhcc--CcEEEEcCCCh
Confidence              34999999999999872  234444444444  48999988764

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.61  E-value=5e-07  Score=80.70  Aligned_cols=105  Identities=11%  Similarity=0.172  Sum_probs=84.3

Q ss_pred             CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCC-CCCeEEEEccCCCC-CCCCCCcceEEecc
Q 019957          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL-TSNLALVRADVCRL-PFASGFVDAVHAGA  245 (333)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~-~~~i~~~~~d~~~l-p~~~~~fD~V~~~~  245 (333)
                      .+||-||.|.|..++.+.+..+..+++.+|+++..++.+++.+....... .+++.++.+|..+. .-..++||+|++..
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~  157 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS  157 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence            59999999999999999999877899999999999999999987643111 37899999998654 21233899999754


Q ss_pred             ccccCCCh------HHHHHHHHHhccCCcEEEEEE
Q 019957          246 ALHCWPSP------SNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       246 vl~h~~d~------~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      .=. . .|      ..+++.+++.|+++|+++...
T Consensus       158 tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~  190 (282)
T COG0421         158 TDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQA  190 (282)
T ss_pred             CCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence            322 1 22      688999999999999999974

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.60  E-value=2.1e-07  Score=78.23  Aligned_cols=125  Identities=12%  Similarity=0.182  Sum_probs=88.6

Q ss_pred             CCcHHHHHHHHHhhcc--cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc
Q 019957          149 PGPDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~  226 (333)
                      |..+..-+.+.+.+..  ..+.++||+-||+|.++..+..+| ..+|+.+|.++..+...+++++..+.  ...+.++..
T Consensus        23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~--~~~~~v~~~   99 (183)
T PF03602_consen   23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGL--EDKIRVIKG   99 (183)
T ss_dssp             SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT---GGGEEEEES
T ss_pred             CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCC--Ccceeeecc
Confidence            4455555666666664  478899999999999999999888 56999999999999999999988764  446889998


Q ss_pred             cCCC-CC---CCCCCcceEEeccccccCCC-hHHHHHHHH--HhccCCcEEEEEEecc
Q 019957          227 DVCR-LP---FASGFVDAVHAGAALHCWPS-PSNAVAEIS--RILRSGGVFVGTTFLR  277 (333)
Q Consensus       227 d~~~-lp---~~~~~fD~V~~~~vl~h~~d-~~~~l~~~~--r~LkpgG~l~i~~~~~  277 (333)
                      |+.. ++   ....+||+|++.=-... .. ...++..+.  .+|+++|.+++.....
T Consensus       100 d~~~~l~~~~~~~~~fDiIflDPPY~~-~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  100 DAFKFLLKLAKKGEKFDIIFLDPPYAK-GLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             SHHHHHHHHHHCTS-EEEEEE--STTS-CHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             CHHHHHHhhcccCCCceEEEECCCccc-chHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            8643 22   13679999998533222 12 256677776  7899999999977554

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.59  E-value=1.7e-06  Score=78.92  Aligned_cols=135  Identities=20%  Similarity=0.272  Sum_probs=105.8

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      .++.+....  |.+|||.=+|.|.++..+++.+.. .|+++|++|.+++..+++++.+++  ...+..+++|....+..-
T Consensus       180 ~Rva~~v~~--GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v--~~~v~~i~gD~rev~~~~  254 (341)
T COG2520         180 ARVAELVKE--GETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKV--EGRVEPILGDAREVAPEL  254 (341)
T ss_pred             HHHHhhhcC--CCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCc--cceeeEEeccHHHhhhcc
Confidence            445555443  889999999999999999999853 499999999999999999999886  555999999998887655


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCc
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT  315 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~  315 (333)
                      +.+|-|++...    .+...++..+.+.+++||.+...+........                ......+.....+.|.+
T Consensus       255 ~~aDrIim~~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~----------------~~~~~~i~~~~~~~~~~  314 (341)
T COG2520         255 GVADRIIMGLP----KSAHEFLPLALELLKDGGIIHYYEFVPEDDIE----------------ERPEKRIKSAARKGGYK  314 (341)
T ss_pred             ccCCEEEeCCC----CcchhhHHHHHHHhhcCcEEEEEeccchhhcc----------------cchHHHHHHHHhhccCc
Confidence            78999998654    35567888999999999999988866542111                12346777777777753

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=3.1e-07  Score=80.40  Aligned_cols=87  Identities=15%  Similarity=0.205  Sum_probs=73.6

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      ....++.+.+.....++..|||||+|.|.++..|.+.+.  .|+++|+++.++...++++..     ..+++++.+|+..
T Consensus        15 d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~n~~vi~~DaLk   87 (259)
T COG0030          15 DKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAP-----YDNLTVINGDALK   87 (259)
T ss_pred             CHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhccc-----ccceEEEeCchhc
Confidence            445567888888887888999999999999999999987  899999999999999988763     5689999999998


Q ss_pred             CCCCCC-CcceEEec
Q 019957          231 LPFASG-FVDAVHAG  244 (333)
Q Consensus       231 lp~~~~-~fD~V~~~  244 (333)
                      .+++.- .++.|+++
T Consensus        88 ~d~~~l~~~~~vVaN  102 (259)
T COG0030          88 FDFPSLAQPYKVVAN  102 (259)
T ss_pred             CcchhhcCCCEEEEc
Confidence            887643 57777765

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.59  E-value=1.1e-06  Score=81.66  Aligned_cols=111  Identities=15%  Similarity=0.182  Sum_probs=76.7

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (333)
                      .+.+.+.+++... +.+|||++||+|.++..+++...  +|+|+|+++.+++.+++++..++   ..++.++.+|+.++-
T Consensus       185 ~l~~~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~---~~~v~~~~~d~~~~~  258 (353)
T TIGR02143       185 KMLEWACEVTQGS-KGDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANN---IDNVQIIRMSAEEFT  258 (353)
T ss_pred             HHHHHHHHHhhcC-CCcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcC---CCcEEEEEcCHHHHH
Confidence            3344555555432 34799999999999999988764  99999999999999999998877   457999999986631


Q ss_pred             C-----------C-----CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          233 F-----------A-----SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       233 ~-----------~-----~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      -           .     ...||+|+..=-  ...-...+++.+.   +|+++++++.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~---~~~~ivYvsC  311 (353)
T TIGR02143       259 QAMNGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQ---AYERILYISC  311 (353)
T ss_pred             HHHhhccccccccccccccCCCCEEEECCC--CCCCcHHHHHHHH---cCCcEEEEEc
Confidence            1           0     113798887321  0011124444443   4788888866

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.56  E-value=1.4e-06  Score=74.06  Aligned_cols=119  Identities=17%  Similarity=0.178  Sum_probs=93.6

Q ss_pred             CcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC
Q 019957          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (333)
Q Consensus       150 ~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (333)
                      ...+..+++..++....+++.||||.=||+.+..++...| +++|+++|+++...+.+.+..+.+|+  ...+++++++.
T Consensus        57 v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv--~~KI~~i~g~a  134 (237)
T KOG1663|consen   57 VGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV--DHKITFIEGPA  134 (237)
T ss_pred             cChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc--cceeeeeecch
Confidence            3445556666666666778999999999998888887754 57999999999999999999999887  78999999988


Q ss_pred             CC-CC-----CCCCCcceEEeccccccCCCh-HHHHHHHHHhccCCcEEEEEE
Q 019957          229 CR-LP-----FASGFVDAVHAGAALHCWPSP-SNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       229 ~~-lp-----~~~~~fD~V~~~~vl~h~~d~-~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      .+ ++     ...++||+++..    |..+- .....++.+++|+||++++--
T Consensus       135 ~esLd~l~~~~~~~tfDfaFvD----adK~nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  135 LESLDELLADGESGTFDFAFVD----ADKDNYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             hhhHHHHHhcCCCCceeEEEEc----cchHHHHHHHHHHHhhcccccEEEEec
Confidence            54 22     346799999963    33322 367889999999999998844

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.55  E-value=7.4e-07  Score=81.57  Aligned_cols=131  Identities=13%  Similarity=0.131  Sum_probs=88.5

Q ss_pred             CCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-------CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCC
Q 019957          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-------GTYSGVVALDFSENMLRQCYDFIKQDNTILT  218 (333)
Q Consensus       146 ~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-------~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~  218 (333)
                      +.++.+....+++..++.+.++.+|||.+||+|.++..+.+.       ....+++|+|+++.++..++.++.-.+.. .
T Consensus        26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~-~  104 (311)
T PF02384_consen   26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID-N  104 (311)
T ss_dssp             GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH-C
T ss_pred             ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc-c
Confidence            356788999999999998888889999999999998888763       24568999999999999988776544431 2


Q ss_pred             CCeEEEEccCCCCCC-C-CCCcceEEeccccccC--------CC-------------hHHHHHHHHHhccCCcEEEEEEe
Q 019957          219 SNLALVRADVCRLPF-A-SGFVDAVHAGAALHCW--------PS-------------PSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       219 ~~i~~~~~d~~~lp~-~-~~~fD~V~~~~vl~h~--------~d-------------~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ....+..+|....+. . ..+||+|+++--+.-.        .+             ...++..+.+.|++||++.+..|
T Consensus       105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp  184 (311)
T PF02384_consen  105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP  184 (311)
T ss_dssp             BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence            234677888755442 2 5789999984222111        01             12578889999999999988887


Q ss_pred             cc
Q 019957          276 LR  277 (333)
Q Consensus       276 ~~  277 (333)
                      ..
T Consensus       185 ~~  186 (311)
T PF02384_consen  185 NG  186 (311)
T ss_dssp             HH
T ss_pred             ch
Confidence            53

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.54  E-value=3.1e-06  Score=74.66  Aligned_cols=111  Identities=11%  Similarity=0.111  Sum_probs=81.7

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc-CCCCCeEEEEccCCCC-CCCCC-CcceEE
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL-PFASG-FVDAVH  242 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-~~~~~i~~~~~d~~~l-p~~~~-~fD~V~  242 (333)
                      .+.+||-||.|.|..+..+.+..+..+++.+|+++.+++.+++.+..... ...++++++.+|.... .-..+ +||+|+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi  155 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII  155 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence            46799999999999999999876567999999999999999998765321 1257899999998543 22233 899999


Q ss_pred             eccccccCCC----hHHHHHHHHHhccCCcEEEEEEec
Q 019957          243 AGAALHCWPS----PSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       243 ~~~vl~h~~d----~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ....-...+.    ...+++.+++.|+|||++++....
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~  193 (246)
T PF01564_consen  156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS  193 (246)
T ss_dssp             EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence            7443222221    257899999999999999997743

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.52  E-value=9.3e-07  Score=76.67  Aligned_cols=132  Identities=15%  Similarity=0.103  Sum_probs=79.0

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeE-EEEccCCC-----CCCCCCCc
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLA-LVRADVCR-----LPFASGFV  238 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~-~~~~d~~~-----lp~~~~~f  238 (333)
                      .++.+|||+|||+|.++..+++.+ ..+|+++|+++.++....+   .     .+++. +...|+..     ++..-..+
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~---~-----~~~v~~~~~~ni~~~~~~~~~~d~~~~  144 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLR---Q-----DERVKVLERTNIRYVTPADIFPDFATF  144 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHh---c-----CCCeeEeecCCcccCCHhHcCCCceee
Confidence            457789999999999999999986 4589999999988765221   1     22221 22333332     22122367


Q ss_pred             ceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE-ecccCCCcchhhHHHHHh----hhccCCCCCHHHHHHHHHhCC
Q 019957          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT-FLRYTSSTSLTGRVLRER----ILQNYNYLTEEEIEDLCTSCG  313 (333)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~t~~~l~~ll~~aG  313 (333)
                      |+++.+..+        .+..+.+.|++ |.+++.. |-..  .    ++.....    .....+..-.+++...+.+.|
T Consensus       145 DvsfiS~~~--------~l~~i~~~l~~-~~~~~L~KPqFE--~----~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~  209 (228)
T TIGR00478       145 DVSFISLIS--------ILPELDLLLNP-NDLTLLFKPQFE--A----GREKKNKKGVVRDKEAIALALHKVIDKGESPD  209 (228)
T ss_pred             eEEEeehHh--------HHHHHHHHhCc-CeEEEEcChHhh--h----cHhhcCcCCeecCHHHHHHHHHHHHHHHHcCC
Confidence            777765442        48889999999 7665533 2111  0    1100000    001122233467778888899


Q ss_pred             CcEEEEE
Q 019957          314 LTNYTSK  320 (333)
Q Consensus       314 f~~v~~~  320 (333)
                      |++....
T Consensus       210 ~~~~~~~  216 (228)
T TIGR00478       210 FQEKKII  216 (228)
T ss_pred             CeEeeEE
Confidence            9987643

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.52  E-value=5.8e-07  Score=80.39  Aligned_cols=109  Identities=17%  Similarity=0.212  Sum_probs=78.9

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-C--CCCCCcceEE
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P--FASGFVDAVH  242 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p--~~~~~fD~V~  242 (333)
                      .+.+|||+=|=||.++..++..| ..+|+.+|.|..+++.+++++..+++. ..++.++..|+.+. .  -..++||+|+
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~-~~~~~~~~~Dvf~~l~~~~~~~~fD~II  200 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLD-LDRHRFIQGDVFKFLKRLKKGGRFDLII  200 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-C-CTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred             CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence            47899999999999999888766 558999999999999999999998862 35789999998652 2  1256899999


Q ss_pred             ec---cc---cccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          243 AG---AA---LHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       243 ~~---~v---l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      +.   +.   ..-..+-.+++..+.++|+|||.|++.+..
T Consensus       201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs  240 (286)
T PF10672_consen  201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS  240 (286)
T ss_dssp             E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            72   11   000123356788899999999999877754

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.51  E-value=2.5e-06  Score=68.82  Aligned_cols=104  Identities=29%  Similarity=0.445  Sum_probs=75.7

Q ss_pred             EEEEcCCcCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC--CCCCC-CCcceEEecc
Q 019957          170 LVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFAS-GFVDAVHAGA  245 (333)
Q Consensus       170 vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~--lp~~~-~~fD~V~~~~  245 (333)
                      +||+|||+|... .+...... ..++|+|+++.++..++......+   ...+.+..+|...  +++.+ ..||++ ...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~  126 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAG---LGLVDFVVADALGGVLPFEDSASFDLV-ISL  126 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcC---CCceEEEEeccccCCCCCCCCCceeEE-eee
Confidence            999999999966 33333222 378999999999988555432211   1116788888876  77776 489999 555


Q ss_pred             ccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      ...|..++...+.++.++++|+|.+++......
T Consensus       127 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  159 (257)
T COG0500         127 LVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD  159 (257)
T ss_pred             eehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence            544444488899999999999999999887654

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.50  E-value=1.3e-06  Score=77.39  Aligned_cols=108  Identities=13%  Similarity=0.130  Sum_probs=80.2

Q ss_pred             CCeEEEEcCCcCH----HHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHHH-----HhcCcC----------------
Q 019957          167 GGLLVDVSCGSGL----FSRKFAKSGT-----YSGVVALDFSENMLRQCYDFI-----KQDNTI----------------  216 (333)
Q Consensus       167 ~~~vLDiGcG~G~----~~~~l~~~~~-----~~~v~g~D~s~~~~~~a~~~~-----~~~~~~----------------  216 (333)
                      .-+|+-+||+||.    ++..+.+.++     ..+++|+|+|..+++.|+.-.     ...+++                
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            5689999999994    3344444442     478999999999999987522     101110                


Q ss_pred             -----CCCCeEEEEccCCCCCCCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEE
Q 019957          217 -----LTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       217 -----~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~  274 (333)
                           -...+.|...|+..-++..+.||+|+|-+||=.+..+  .++++.++..|+|||+|++-.
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence                 1235678888886655345689999999999998766  578999999999999999954

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.50  E-value=3.1e-06  Score=72.27  Aligned_cols=128  Identities=13%  Similarity=0.083  Sum_probs=88.8

Q ss_pred             EEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC-CCCCCCCCCcceEEeccccc
Q 019957          170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVDAVHAGAALH  248 (333)
Q Consensus       170 vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~V~~~~vl~  248 (333)
                      |.||||-.|++..+|.+.+....++++|+++.-++.|++++...++  ..++.+..+|- ..++. .+..|.|+..++=.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l--~~~i~~rlgdGL~~l~~-~e~~d~ivIAGMGG   77 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL--EDRIEVRLGDGLEVLKP-GEDVDTIVIAGMGG   77 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGGG--G-GG---EEEEEEE-H
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--cccEEEEECCcccccCC-CCCCCEEEEecCCH
Confidence            6899999999999999998767899999999999999999999887  77899999995 44542 22378888755422


Q ss_pred             cCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEE---EeCeE
Q 019957          249 CWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK---VQQSF  325 (333)
Q Consensus       249 h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~---~~~~~  325 (333)
                      .+  ....|.+....++....|++....                        ....++++|.++||.++++.   ..+.|
T Consensus        78 ~l--I~~ILe~~~~~~~~~~~lILqP~~------------------------~~~~LR~~L~~~gf~I~~E~lv~e~~~~  131 (205)
T PF04816_consen   78 EL--IIEILEAGPEKLSSAKRLILQPNT------------------------HAYELRRWLYENGFEIIDEDLVEENGRF  131 (205)
T ss_dssp             HH--HHHHHHHTGGGGTT--EEEEEESS-------------------------HHHHHHHHHHTTEEEEEEEEEEETTEE
T ss_pred             HH--HHHHHHhhHHHhccCCeEEEeCCC------------------------ChHHHHHHHHHCCCEEEEeEEEeECCEE
Confidence            11  245566666666665667765432                        24689999999999998863   24555


Q ss_pred             E
Q 019957          326 I  326 (333)
Q Consensus       326 ~  326 (333)
                      +
T Consensus       132 Y  132 (205)
T PF04816_consen  132 Y  132 (205)
T ss_dssp             E
T ss_pred             E
Confidence            3

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.50  E-value=3.6e-06  Score=78.20  Aligned_cols=128  Identities=21%  Similarity=0.249  Sum_probs=97.1

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (333)
                      +....+....+.+.++.+|||+.++.|.=+.+++....+  ..|+++|.++.-++..++++++.|   ..++..+..|..
T Consensus       142 d~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG---~~nv~~~~~d~~  218 (355)
T COG0144         142 DEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG---VRNVIVVNKDAR  218 (355)
T ss_pred             CHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC---CCceEEEecccc
Confidence            333455566788889999999999999988888887643  457999999999999999999988   556788888876


Q ss_pred             CCC---CCCCCcceEEe------ccccccCCCh----------------HHHHHHHHHhccCCcEEEEEEecccCCCc
Q 019957          230 RLP---FASGFVDAVHA------GAALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRYTSST  282 (333)
Q Consensus       230 ~lp---~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~  282 (333)
                      .++   ...++||.|+.      .+++..-++.                .++|..+.++|||||.|+.+|-......+
T Consensus       219 ~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eEN  296 (355)
T COG0144         219 RLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEEN  296 (355)
T ss_pred             cccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcC
Confidence            554   22236999996      4555332221                36788999999999999999976653333

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.44  E-value=7.2e-06  Score=70.06  Aligned_cols=128  Identities=16%  Similarity=0.091  Sum_probs=96.8

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccc
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (333)
                      +.+++|||+|.|.=+.-++-..|+.+++-+|....-+.+.+....+.+   .+|+.++.+.++++.-....||+|++..+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~---L~nv~i~~~RaE~~~~~~~~~D~vtsRAv  144 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG---LENVEIVHGRAEEFGQEKKQYDVVTSRAV  144 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC---CCCeEEehhhHhhcccccccCcEEEeehc
Confidence            579999999999999988877888899999999988888888777776   67899999999998632222999999776


Q ss_pred             cccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957          247 LHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       247 l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~  321 (333)
                          .+...+..-+...+|+||.++..-..           ...+         -..+.+......|+.+.++..
T Consensus       145 ----a~L~~l~e~~~pllk~~g~~~~~k~~-----------~~~~---------e~~e~~~a~~~~~~~~~~~~~  195 (215)
T COG0357         145 ----ASLNVLLELCLPLLKVGGGFLAYKGL-----------AGKD---------ELPEAEKAILPLGGQVEKVFS  195 (215)
T ss_pred             ----cchHHHHHHHHHhcccCCcchhhhHH-----------hhhh---------hHHHHHHHHHhhcCcEEEEEE
Confidence                44566677777889999987653311           1111         124667778888888777543

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.42  E-value=1.9e-06  Score=74.70  Aligned_cols=85  Identities=15%  Similarity=0.250  Sum_probs=70.6

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      .++.|.+.....++..|||||.|||.++..+.+.+.  +|+++|+++.|+....++......  ...+.++.+|+...++
T Consensus        46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gtp~--~~kLqV~~gD~lK~d~  121 (315)
T KOG0820|consen   46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTPK--SGKLQVLHGDFLKTDL  121 (315)
T ss_pred             HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCCCc--cceeeEEecccccCCC
Confidence            345566666677888999999999999999999987  999999999999999988765432  5689999999988764


Q ss_pred             CCCCcceEEec
Q 019957          234 ASGFVDAVHAG  244 (333)
Q Consensus       234 ~~~~fD~V~~~  244 (333)
                      +  .||.++++
T Consensus       122 P--~fd~cVsN  130 (315)
T KOG0820|consen  122 P--RFDGCVSN  130 (315)
T ss_pred             c--ccceeecc
Confidence            4  79999884

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.40  E-value=9.7e-07  Score=79.33  Aligned_cols=95  Identities=19%  Similarity=0.242  Sum_probs=72.3

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-
Q 019957          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (333)
Q Consensus       155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-  232 (333)
                      .+.+.+.+.+.++..+||.+||.|..+..+++..+ ...|+|+|.++.+++.+++++..     ..++.++.+|+.++. 
T Consensus         8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~l~~   82 (296)
T PRK00050          8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSNLKE   82 (296)
T ss_pred             HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHHHHH
Confidence            34555666667788999999999999999999864 57999999999999999988754     347999999998764 


Q ss_pred             -CCCC--CcceEEeccc--cccCCChH
Q 019957          233 -FASG--FVDAVHAGAA--LHCWPSPS  254 (333)
Q Consensus       233 -~~~~--~fD~V~~~~v--l~h~~d~~  254 (333)
                       ..++  ++|.|++...  -+++.++.
T Consensus        83 ~l~~~~~~vDgIl~DLGvSs~Qld~~~  109 (296)
T PRK00050         83 VLAEGLGKVDGILLDLGVSSPQLDDAE  109 (296)
T ss_pred             HHHcCCCccCEEEECCCccccccCCCc
Confidence             1122  7999997432  23444443

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.39  E-value=6.8e-06  Score=68.33  Aligned_cols=126  Identities=16%  Similarity=0.133  Sum_probs=93.2

Q ss_pred             CCcHHHHHHHHHhhcc--cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc
Q 019957          149 PGPDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~  226 (333)
                      |..+..-+.+.+++.+  ..+.++||+=+|+|.++..+..+| ...++.+|.+..+....+++++..+.  ..+..++..
T Consensus        24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~--~~~~~~~~~  100 (187)
T COG0742          24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGL--EGEARVLRN  100 (187)
T ss_pred             CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCC--ccceEEEee
Confidence            4455555677777765  578999999999999999999997 56999999999999999999888764  568888888


Q ss_pred             cCCCC-CCCCC--CcceEEecccccc-CCChHHHHHH--HHHhccCCcEEEEEEecc
Q 019957          227 DVCRL-PFASG--FVDAVHAGAALHC-WPSPSNAVAE--ISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       227 d~~~l-p~~~~--~fD~V~~~~vl~h-~~d~~~~l~~--~~r~LkpgG~l~i~~~~~  277 (333)
                      |+... +....  .||+|+..--.+. +.+....+..  -..+|+|+|.+++.....
T Consensus       101 da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         101 DALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             cHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            88743 11222  4999998554441 2222333333  447799999999977543

>PRK00536 speE spermidine synthase; Provisional

Probab=98.38  E-value=3.6e-06  Score=74.40  Aligned_cols=99  Identities=14%  Similarity=0.143  Sum_probs=76.6

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-cCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .+.+||=||.|.|..++.+.+.-  .+|+-+|+++.+++.+++.+.... ....++++++.. +.+.  ..++||+|+..
T Consensus        72 ~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~--~~~~fDVIIvD  146 (262)
T PRK00536         72 ELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL--DIKKYDLIICL  146 (262)
T ss_pred             CCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc--cCCcCCEEEEc
Confidence            45799999999999999999874  399999999999999999665321 112577887752 2211  23689999976


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      ..     .+..+.+.+++.|+|||+++...
T Consensus       147 s~-----~~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        147 QE-----PDIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             CC-----CChHHHHHHHHhcCCCcEEEECC
Confidence            42     45677899999999999999865

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.36  E-value=1.5e-05  Score=72.68  Aligned_cols=106  Identities=16%  Similarity=0.150  Sum_probs=76.2

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEE--EEccCCC----CCC--
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL--VRADVCR----LPF--  233 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~--~~~d~~~----lp~--  233 (333)
                      ++..|+|+|||+|.=+..|.+.    +....++++|+|..+++.+.+++....   .+.+.+  +.+|+.+    ++-  
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~---~p~l~v~~l~gdy~~~l~~l~~~~  152 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN---FSHVRCAGLLGTYDDGLAWLKRPE  152 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc---CCCeEEEEEEecHHHHHhhccccc
Confidence            4568999999999866655443    334579999999999999999887322   455555  7888855    221  


Q ss_pred             CCCCcceEEe-ccccccCCCh--HHHHHHHHH-hccCCcEEEEEE
Q 019957          234 ASGFVDAVHA-GAALHCWPSP--SNAVAEISR-ILRSGGVFVGTT  274 (333)
Q Consensus       234 ~~~~fD~V~~-~~vl~h~~d~--~~~l~~~~r-~LkpgG~l~i~~  274 (333)
                      ......+++. ..+|..++..  ..+|+++++ .|+|||.|++..
T Consensus       153 ~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~  197 (319)
T TIGR03439       153 NRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL  197 (319)
T ss_pred             ccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence            1234566665 4578887655  378999999 999999988854

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.34  E-value=9.5e-06  Score=76.96  Aligned_cols=109  Identities=18%  Similarity=0.323  Sum_probs=87.5

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      +.+.+.+.+++...++.++||+=||.|.++..+++...  +|+|+|+++.+++.|+++++.++   ..|+.|..++++++
T Consensus       279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n~---i~N~~f~~~~ae~~  353 (432)
T COG2265         279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAANG---IDNVEFIAGDAEEF  353 (432)
T ss_pred             HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHcC---CCcEEEEeCCHHHH
Confidence            44556777788877788999999999999999997765  99999999999999999999998   56799999999887


Q ss_pred             CCC---CCCcceEEeccccccCCCh------HHHHHHHHHhccCCcEEEEEE
Q 019957          232 PFA---SGFVDAVHAGAALHCWPSP------SNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       232 p~~---~~~fD~V~~~~vl~h~~d~------~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      ...   ...+|+|+.        ||      ..+++.+.+ ++|..+++++.
T Consensus       354 ~~~~~~~~~~d~Vvv--------DPPR~G~~~~~lk~l~~-~~p~~IvYVSC  396 (432)
T COG2265         354 TPAWWEGYKPDVVVV--------DPPRAGADREVLKQLAK-LKPKRIVYVSC  396 (432)
T ss_pred             hhhccccCCCCEEEE--------CCCCCCCCHHHHHHHHh-cCCCcEEEEeC
Confidence            533   357899986        33      244555444 67778888866

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.33  E-value=9.2e-07  Score=72.26  Aligned_cols=72  Identities=22%  Similarity=0.300  Sum_probs=55.9

Q ss_pred             eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--CCCCC-cceEEec
Q 019957          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGF-VDAVHAG  244 (333)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~-fD~V~~~  244 (333)
                      .|+|+.||.|..+..+++.+.  .|+++|+++..++.++.+++..|+  ..+++++++|+.++.  +.... +|+|+++
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv--~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGV--ADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            699999999999999999976  999999999999999999999886  779999999997653  22222 8999973

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.32  E-value=1e-07  Score=75.43  Aligned_cols=59  Identities=25%  Similarity=0.205  Sum_probs=48.8

Q ss_pred             CeEEEEccCCCCCCCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEeccc
Q 019957          220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       220 ~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      .+++++--....+|.+++.|+|.+.+|+||+.-.  ..++++++++|||||.|-++.|...
T Consensus        30 ~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~   90 (185)
T COG4627          30 EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK   90 (185)
T ss_pred             ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence            4555554445678999999999999999998643  5789999999999999999998754

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.32  E-value=5.2e-05  Score=64.53  Aligned_cols=149  Identities=17%  Similarity=0.189  Sum_probs=94.1

Q ss_pred             cccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---CCCCCc
Q 019957          163 KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFV  238 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~f  238 (333)
                      ...++.+||-+|.++|.....++.- ++.+.|+++|+|+...+..-...+.     .+|+--+..|+....   .--+.+
T Consensus        70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-----R~NIiPIl~DAr~P~~Y~~lv~~V  144 (229)
T PF01269_consen   70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-----RPNIIPILEDARHPEKYRMLVEMV  144 (229)
T ss_dssp             S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-----STTEEEEES-TTSGGGGTTTS--E
T ss_pred             CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-----CCceeeeeccCCChHHhhcccccc
Confidence            4567889999999999999999987 5577999999999665555544444     678888999987532   113489


Q ss_pred             ceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEE
Q 019957          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT  318 (333)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~  318 (333)
                      |+|++.-.  +-.+..-++..+...||+||.++++.-...-.....-..-             -.+-.+.|++.||+..+
T Consensus       145 DvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~v-------------f~~e~~~L~~~~~~~~e  209 (229)
T PF01269_consen  145 DVIFQDVA--QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEV-------------FAEEVKKLKEEGFKPLE  209 (229)
T ss_dssp             EEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHH-------------HHHHHHHHHCTTCEEEE
T ss_pred             cEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHH-------------HHHHHHHHHHcCCChhe
Confidence            99987532  1122245677788899999999997643210000000000             12334667788999999


Q ss_pred             EEEeCeE----EEEEEe
Q 019957          319 SKVQQSF----IMFAAQ  331 (333)
Q Consensus       319 ~~~~~~~----~~~~a~  331 (333)
                      ...-.+|    .+++++
T Consensus       210 ~i~LePy~~dH~~vv~~  226 (229)
T PF01269_consen  210 QITLEPYERDHAMVVGR  226 (229)
T ss_dssp             EEE-TTTSTTEEEEEEE
T ss_pred             EeccCCCCCCcEEEEEE
Confidence            8775555    555543

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.24  E-value=4.4e-06  Score=71.31  Aligned_cols=118  Identities=14%  Similarity=0.188  Sum_probs=70.1

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH-------hcCcCCCCCeEEEEcc
Q 019957          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK-------QDNTILTSNLALVRAD  227 (333)
Q Consensus       155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-------~~~~~~~~~i~~~~~d  227 (333)
                      +..+.+.++..++..++|||||.|.....++....-...+|+|+.+...+.|+....       ..|. ....+.+..+|
T Consensus        31 ~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~-~~~~v~l~~gd  109 (205)
T PF08123_consen   31 VSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK-RPGKVELIHGD  109 (205)
T ss_dssp             HHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB----EEEEECS-
T ss_pred             HHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc-ccccceeeccC
Confidence            344556677777889999999999988877766544469999999988777765332       2222 13567888888


Q ss_pred             CCCCCCCC---CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          228 VCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       228 ~~~lp~~~---~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      +.+.++..   ...|+|+++..... ++....|.++...||+|.+++-..
T Consensus       110 fl~~~~~~~~~s~AdvVf~Nn~~F~-~~l~~~L~~~~~~lk~G~~IIs~~  158 (205)
T PF08123_consen  110 FLDPDFVKDIWSDADVVFVNNTCFD-PDLNLALAELLLELKPGARIISTK  158 (205)
T ss_dssp             TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS
T ss_pred             ccccHhHhhhhcCCCEEEEeccccC-HHHHHHHHHHHhcCCCCCEEEECC
Confidence            87644211   35799999876531 233456777778889988876543

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=1.6e-06  Score=69.33  Aligned_cols=130  Identities=16%  Similarity=0.076  Sum_probs=87.1

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc
Q 019957          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (333)
                      |..+...-.++...+...+.+|||+|.|. |..+..++..-+...|...|-++..++..++....+-......+..+.-+
T Consensus        12 pseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~   91 (201)
T KOG3201|consen   12 PSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWL   91 (201)
T ss_pred             ccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHH
Confidence            33344444455555555678999999995 55666666667788999999999999888876544321112333333333


Q ss_pred             CCC--CCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957          228 VCR--LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       228 ~~~--lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      ...  .......||+|++...+..-..-..+.+.|.+.|+|.|.-++..|.+.
T Consensus        92 ~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg  144 (201)
T KOG3201|consen   92 IWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG  144 (201)
T ss_pred             HhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCccc
Confidence            221  112345899999988776544456788999999999999888776653

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.24  E-value=1.4e-05  Score=78.54  Aligned_cols=95  Identities=13%  Similarity=0.186  Sum_probs=64.8

Q ss_pred             CCCCcHHHHHHHHHhhccc-------CCCeEEEEcCCcCHHHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHHHH
Q 019957          147 GFPGPDEEFKMAQEYFKSA-------QGGLLVDVSCGSGLFSRKFAKSGT--------YSGVVALDFSENMLRQCYDFIK  211 (333)
Q Consensus       147 ~~~~~~~~~~~~~~~l~~~-------~~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~g~D~s~~~~~~a~~~~~  211 (333)
                      .++.+....+.+.+.+...       ...+|||.|||+|.++..+.+..+        ...++|+|+++..+..++.++.
T Consensus         5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~   84 (524)
T TIGR02987         5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG   84 (524)
T ss_pred             ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence            3456666777777655321       345899999999999988876542        2578999999999999998876


Q ss_pred             hcCcCCCCCeEEEEccCCCC-----CCCCCCcceEEec
Q 019957          212 QDNTILTSNLALVRADVCRL-----PFASGFVDAVHAG  244 (333)
Q Consensus       212 ~~~~~~~~~i~~~~~d~~~l-----p~~~~~fD~V~~~  244 (333)
                      ..+   ...+.+...|....     .-..+.||+|+.+
T Consensus        85 ~~~---~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgN  119 (524)
T TIGR02987        85 EFA---LLEINVINFNSLSYVLLNIESYLDLFDIVITN  119 (524)
T ss_pred             hcC---CCCceeeecccccccccccccccCcccEEEeC
Confidence            643   22345555554321     1112579999985

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.24  E-value=1.9e-05  Score=79.93  Aligned_cols=127  Identities=15%  Similarity=0.062  Sum_probs=89.2

Q ss_pred             CCcHHHHHHHHHhhcc-cCCCeEEEEcCCcCHHHHHHHHhC---------------------------------------
Q 019957          149 PGPDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSG---------------------------------------  188 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~---------------------------------------  188 (333)
                      |..+.+...++....- .++..++|.+||+|.++...+...                                       
T Consensus       172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~  251 (702)
T PRK11783        172 PLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG  251 (702)
T ss_pred             CCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence            4455566666655443 456799999999999998776521                                       


Q ss_pred             ---CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC--CCCcceEEeccccc-cCCC---hHHHHHH
Q 019957          189 ---TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA--SGFVDAVHAGAALH-CWPS---PSNAVAE  259 (333)
Q Consensus       189 ---~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~--~~~fD~V~~~~vl~-h~~d---~~~~l~~  259 (333)
                         ....++|+|+++.+++.|++++...|+  ...+.+.++|+.+++..  .++||+|+++--.. .+.+   ...+.++
T Consensus       252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~--~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~  329 (702)
T PRK11783        252 LAELPSKFYGSDIDPRVIQAARKNARRAGV--AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQ  329 (702)
T ss_pred             ccccCceEEEEECCHHHHHHHHHHHHHcCC--CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHH
Confidence               012699999999999999999999886  56789999999887643  35799999974332 2222   2233344


Q ss_pred             HHHhc---cCCcEEEEEEecc
Q 019957          260 ISRIL---RSGGVFVGTTFLR  277 (333)
Q Consensus       260 ~~r~L---kpgG~l~i~~~~~  277 (333)
                      +.+.+   .+|+.+++.+...
T Consensus       330 lg~~lk~~~~g~~~~llt~~~  350 (702)
T PRK11783        330 LGRRLKQQFGGWNAALFSSSP  350 (702)
T ss_pred             HHHHHHHhCCCCeEEEEeCCH
Confidence            44444   4899988877643

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.21  E-value=4.8e-06  Score=68.31  Aligned_cols=100  Identities=17%  Similarity=0.185  Sum_probs=78.8

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (333)
                      ....+.|+|+|+|-++...+....  +|++++.+|...+.|.+++...|   ..++.++.+|+....|  ...|+|+|-.
T Consensus        32 a~d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~g---~~n~evv~gDA~~y~f--e~ADvvicEm  104 (252)
T COG4076          32 AEDTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVPG---DVNWEVVVGDARDYDF--ENADVVICEM  104 (252)
T ss_pred             hhhceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCCC---CcceEEEecccccccc--cccceeHHHH
Confidence            346899999999999988888754  99999999999999999887666   6799999999999887  4689998732


Q ss_pred             c--cccCCChHHHHHHHHHhccCCcEEEE
Q 019957          246 A--LHCWPSPSNAVAEISRILRSGGVFVG  272 (333)
Q Consensus       246 v--l~h~~d~~~~l~~~~r~LkpgG~l~i  272 (333)
                      .  .--......+++.+...||-++.++=
T Consensus       105 lDTaLi~E~qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         105 LDTALIEEKQVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             hhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence            2  11112334677888888888887764

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.21  E-value=7.2e-06  Score=67.87  Aligned_cols=115  Identities=17%  Similarity=0.199  Sum_probs=84.9

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      +.+...-..-.+++|||+|+|+|.-+...++.| ...|+..|+.+......+-+.+.++    ..+.+...|...   .+
T Consensus        69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~ang----v~i~~~~~d~~g---~~  140 (218)
T COG3897          69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANG----VSILFTHADLIG---SP  140 (218)
T ss_pred             HHHhcCccccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhcc----ceeEEeeccccC---CC
Confidence            333333333468899999999999999999887 5689999999888888777777765    367888777755   36


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      ..||+|+.+.++..-+.-.+++.-..+....|-.+++-+|.+.
T Consensus       141 ~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~  183 (218)
T COG3897         141 PAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRA  183 (218)
T ss_pred             cceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence            7899999999887656666777744444455666676676654

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.20  E-value=3.2e-05  Score=68.67  Aligned_cols=107  Identities=14%  Similarity=0.157  Sum_probs=67.1

Q ss_pred             CCeEEEEcCCcCHH-HHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHH-hcCcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957          167 GGLLVDVSCGSGLF-SRKFAKS-GTYSGVVALDFSENMLRQCYDFIK-QDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (333)
Q Consensus       167 ~~~vLDiGcG~G~~-~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~-~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (333)
                      +.+|+=||+|.=-+ +..+++. +....++++|+++.+.+.+++... ..++  ..++.++.+|....+..-..||+|+.
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L--~~~m~f~~~d~~~~~~dl~~~DvV~l  198 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL--SKRMSFITADVLDVTYDLKEYDVVFL  198 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH---SSEEEEES-GGGG-GG----SEEEE
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc--cCCeEEEecchhccccccccCCEEEE
Confidence            35999999997544 4455543 556689999999999999998877 3444  67899999999877655568999998


Q ss_pred             ccccccCC-ChHHHHHHHHHhccCCcEEEEEEe
Q 019957          244 GAALHCWP-SPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       244 ~~vl~h~~-d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      .....--. +-.++|..+.+.++||..+++-..
T Consensus       199 AalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa  231 (276)
T PF03059_consen  199 AALVGMDAEPKEEILEHLAKHMAPGARLVVRSA  231 (276)
T ss_dssp             -TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred             hhhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence            66655332 456899999999999999998753

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.19  E-value=1.7e-05  Score=73.92  Aligned_cols=100  Identities=13%  Similarity=0.199  Sum_probs=81.7

Q ss_pred             CeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-CCCCCcceEEecc
Q 019957          168 GLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAGA  245 (333)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~~  245 (333)
                      .+|||+.||+|..+..++...+ ...|+++|+++.+++.++++++.++   ..++.++++|+..+- ....+||+|...-
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~---~~~~~v~~~Da~~~l~~~~~~fDvIdlDP  122 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS---VENIEVPNEDAANVLRYRNRKFHVIDIDP  122 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence            5899999999999999988732 3589999999999999999998876   346889999987652 1235799998744


Q ss_pred             ccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          246 ALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                          ...|..++..+.+.+++||.|+++-
T Consensus       123 ----fGs~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       123 ----FGTPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             ----CCCcHHHHHHHHHhcccCCEEEEEe
Confidence                2456678999999999999999974

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.19  E-value=1.3e-05  Score=72.29  Aligned_cols=121  Identities=18%  Similarity=0.213  Sum_probs=93.6

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (333)
                      ........+.+.++..|||+.++.|.-+..++.... ...+++.|+++..+...++++++.|   ..++.....|.....
T Consensus        73 sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g---~~~v~~~~~D~~~~~  149 (283)
T PF01189_consen   73 SSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG---VFNVIVINADARKLD  149 (283)
T ss_dssp             HHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----SSEEEEESHHHHHH
T ss_pred             ccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC---CceEEEEeecccccc
Confidence            334555667788899999999999999888888754 5799999999999999999999988   667888878876651


Q ss_pred             --CCCCCcceEEe------ccccccCCCh----------------HHHHHHHHHhc----cCCcEEEEEEecc
Q 019957          233 --FASGFVDAVHA------GAALHCWPSP----------------SNAVAEISRIL----RSGGVFVGTTFLR  277 (333)
Q Consensus       233 --~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~~~r~L----kpgG~l~i~~~~~  277 (333)
                        .....||.|+.      .+++.+-++.                .++|+.+.+.+    ||||+++.+|-..
T Consensus       150 ~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~  222 (283)
T PF01189_consen  150 PKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL  222 (283)
T ss_dssp             HHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred             ccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence              22346999996      3444444432                35789999999    9999999998554

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=98.17  E-value=1.8e-05  Score=65.32  Aligned_cols=147  Identities=18%  Similarity=0.220  Sum_probs=93.7

Q ss_pred             hhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHH---HH---HHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          161 YFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENML---RQ---CYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~---~~---a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      +....++.+|+|+=.|.|++++-++.. ++...|+++-..+...   ..   .+....+..   ..|...+-.+...++ 
T Consensus        43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~---~aN~e~~~~~~~A~~-  118 (238)
T COG4798          43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV---YANVEVIGKPLVALG-  118 (238)
T ss_pred             EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh---hhhhhhhCCcccccC-
Confidence            445678999999999999999999887 6666787776544310   00   000011111   234444545554444 


Q ss_pred             CCCCcceEEeccccccC-------CChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHH
Q 019957          234 ASGFVDAVHAGAALHCW-------PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIE  306 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~-------~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~  306 (333)
                      ..+..|+++....-|-+       ....++.+++.+.|||||++++.+........      .  ......++.+...+.
T Consensus       119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~------~--~dt~~~~ri~~a~V~  190 (238)
T COG4798         119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSG------L--SDTITLHRIDPAVVI  190 (238)
T ss_pred             CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCC------h--hhhhhhcccChHHHH
Confidence            44567777653332211       23357899999999999999999876542111      1  112456778999999


Q ss_pred             HHHHhCCCcEEEE
Q 019957          307 DLCTSCGLTNYTS  319 (333)
Q Consensus       307 ~ll~~aGf~~v~~  319 (333)
                      +..+++||+..-+
T Consensus       191 a~veaaGFkl~ae  203 (238)
T COG4798         191 AEVEAAGFKLEAE  203 (238)
T ss_pred             HHHHhhcceeeee
Confidence            9999999987654

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=98.16  E-value=3e-05  Score=72.97  Aligned_cols=103  Identities=22%  Similarity=0.405  Sum_probs=87.3

Q ss_pred             eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccc
Q 019957          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH  248 (333)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~  248 (333)
                      ++|.+|||.-.+...+.+.| ...++-+|+|+-.++....+....    .+.+.+...|...+.|++++||+|+.-+.++
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~----~~~~~~~~~d~~~l~fedESFdiVIdkGtlD  125 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKE----RPEMQMVEMDMDQLVFEDESFDIVIDKGTLD  125 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccC----CcceEEEEecchhccCCCcceeEEEecCccc
Confidence            89999999999999999987 558999999999888877654321    5678999999999999999999999999998


Q ss_pred             cCCCh----------HHHHHHHHHhccCCcEEEEEEec
Q 019957          249 CWPSP----------SNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       249 h~~d~----------~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ++-.+          ...+.++.|+|++||+++..+..
T Consensus       126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~  163 (482)
T KOG2352|consen  126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV  163 (482)
T ss_pred             cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence            87322          24578999999999998888773

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.16  E-value=4.4e-05  Score=70.24  Aligned_cols=138  Identities=17%  Similarity=0.082  Sum_probs=98.1

Q ss_pred             HHHhhHHhhcccCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCC-----------------------
Q 019957          134 LYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-----------------------  190 (333)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-----------------------  190 (333)
                      ...++||..-  ..-|..+.+...|..+-+..++..++|-=||+|.++...+..+.+                       
T Consensus       161 LhkRGyR~~~--g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~  238 (381)
T COG0116         161 LHKRGYRVYD--GPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWD  238 (381)
T ss_pred             hhhccccccC--CCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHH
Confidence            3455555432  223445555666666666666778999999999999988876631                       


Q ss_pred             ---------C-------eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecccc-ccCCCh
Q 019957          191 ---------S-------GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL-HCWPSP  253 (333)
Q Consensus       191 ---------~-------~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl-~h~~d~  253 (333)
                               .       .++|+|+++.+++.|+.+....|+  ...|.|.++|+..++.+-+.+|+|+++--. +-+.+.
T Consensus       239 ~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv--~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~  316 (381)
T COG0116         239 KLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGV--GDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSE  316 (381)
T ss_pred             HHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCC--CceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCCh
Confidence                     1       277999999999999999999997  788999999999886443789999996432 112222


Q ss_pred             ---H----HHHHHHHHhccCCcEEEEEEe
Q 019957          254 ---S----NAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       254 ---~----~~l~~~~r~LkpgG~l~i~~~  275 (333)
                         .    .+.+.+++.++-.+.+++++.
T Consensus       317 ~~v~~LY~~fg~~lk~~~~~ws~~v~tt~  345 (381)
T COG0116         317 ALVAKLYREFGRTLKRLLAGWSRYVFTTS  345 (381)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence               1    334455666777777777663

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.14  E-value=1.9e-05  Score=70.47  Aligned_cols=106  Identities=12%  Similarity=0.225  Sum_probs=77.8

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      .....+.+.+.+...++..|||||+|.|.++..+.+.+.  +++++|+++...+..++++..     .+++.++.+|+..
T Consensus        15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~~-----~~~~~vi~~D~l~   87 (262)
T PF00398_consen   15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFAS-----NPNVEVINGDFLK   87 (262)
T ss_dssp             HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCTT-----CSSEEEEES-TTT
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhhh-----cccceeeecchhc
Confidence            345667788888877889999999999999999999984  999999999999999987663     5689999999988


Q ss_pred             CCCCC---CCcceEEeccccccCCChHHHHHHHHHhccC
Q 019957          231 LPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRS  266 (333)
Q Consensus       231 lp~~~---~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkp  266 (333)
                      +....   ..-..|+++-  .+ .-...++..+...-+.
T Consensus        88 ~~~~~~~~~~~~~vv~Nl--Py-~is~~il~~ll~~~~~  123 (262)
T PF00398_consen   88 WDLYDLLKNQPLLVVGNL--PY-NISSPILRKLLELYRF  123 (262)
T ss_dssp             SCGGGHCSSSEEEEEEEE--TG-TGHHHHHHHHHHHGGG
T ss_pred             cccHHhhcCCceEEEEEe--cc-cchHHHHHHHhhcccc
Confidence            76543   2344555543  22 1223456666553333

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.12  E-value=1.1e-05  Score=75.12  Aligned_cols=74  Identities=23%  Similarity=0.470  Sum_probs=57.3

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ..+++.+.+++...++ .|||+-||.|.++..+++...  +|+|+|.++.+++.|+++++.++   ..++.|+.++.+++
T Consensus       183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~---i~n~~f~~~~~~~~  256 (352)
T PF05958_consen  183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNG---IDNVEFIRGDAEDF  256 (352)
T ss_dssp             HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE--SHHC
T ss_pred             HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcC---CCcceEEEeeccch
Confidence            4455666777776655 899999999999999999865  99999999999999999999988   57899998877543

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.12  E-value=4.4e-05  Score=61.40  Aligned_cols=104  Identities=19%  Similarity=0.200  Sum_probs=70.3

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHH-----hCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcc
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAK-----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD  239 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD  239 (333)
                      .+..+|+|+|||.|+++..++.     . ++.+|+++|.++...+.+.++.+..+.....++.+..++...... ....+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  101 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD  101 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence            5677999999999999999998     4 577999999999999999988776542223456666666544321 44667


Q ss_pred             eEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      +++..+.-.-+.  ..+|+...+   ++-.+++..|
T Consensus       102 ~~vgLHaCG~Ls--~~~l~~~~~---~~~~~l~~vp  132 (141)
T PF13679_consen  102 ILVGLHACGDLS--DRALRLFIR---PNARFLVLVP  132 (141)
T ss_pred             EEEEeecccchH--HHHHHHHHH---cCCCEEEEcC
Confidence            777655433322  233444433   6666555544

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.11  E-value=2e-05  Score=66.16  Aligned_cols=113  Identities=13%  Similarity=0.211  Sum_probs=86.0

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC--CC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PF  233 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~  233 (333)
                      ....+.+. .++++||+||-|.|-....+.++-|. +-+.+|..+..++..++.--.    ...++..+.+-.++.  .+
T Consensus        92 ha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~----ek~nViil~g~WeDvl~~L  165 (271)
T KOG1709|consen   92 HALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWR----EKENVIILEGRWEDVLNTL  165 (271)
T ss_pred             HHHHHHHh-hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccc----cccceEEEecchHhhhccc
Confidence            33333333 56889999999999888888887654 667899999998877764222    245777777776653  25


Q ss_pred             CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      +++.||-|+-...-+|..|...+.+.+.++|||+|++-...
T Consensus       166 ~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN  206 (271)
T KOG1709|consen  166 PDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFN  206 (271)
T ss_pred             cccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence            68899999987776888899999999999999999986643

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=98.10  E-value=4.5e-05  Score=67.63  Aligned_cols=159  Identities=18%  Similarity=0.162  Sum_probs=102.3

Q ss_pred             HHHHHHHhhcc----cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH---HhcCc-----------
Q 019957          154 EFKMAQEYFKS----AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI---KQDNT-----------  215 (333)
Q Consensus       154 ~~~~~~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~~-----------  215 (333)
                      +++.+..+.++    ....+||--|||.|+++..++..|+  .+-|=|+|--|+-...=.+   +..+-           
T Consensus       134 ii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~s  211 (369)
T KOG2798|consen  134 IIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYS  211 (369)
T ss_pred             HHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccc
Confidence            44445444443    2345899999999999999999988  6667788776653332222   11110           


Q ss_pred             ------------------C-----CCCCeEEEEccCCCC-C--CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcE
Q 019957          216 ------------------I-----LTSNLALVRADVCRL-P--FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGV  269 (333)
Q Consensus       216 ------------------~-----~~~~i~~~~~d~~~l-p--~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~  269 (333)
                                        +     .......-.||+.+. +  -..+.||+|+..+.+.--.+....|+.|..+|||||+
T Consensus       212 n~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGv  291 (369)
T KOG2798|consen  212 NSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGV  291 (369)
T ss_pred             cccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcE
Confidence                              0     011112233555432 1  1234799999888888777888999999999999999


Q ss_pred             EEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957          270 FVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       270 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                      .+-..|..+......      +..+...--++.+++..+.+..||++++..
T Consensus       292 WiNlGPLlYHF~d~~------g~~~~~siEls~edl~~v~~~~GF~~~ke~  336 (369)
T KOG2798|consen  292 WINLGPLLYHFEDTH------GVENEMSIELSLEDLKRVASHRGFEVEKER  336 (369)
T ss_pred             EEeccceeeeccCCC------CCcccccccccHHHHHHHHHhcCcEEEEee
Confidence            988776654111100      001123445789999999999999998753

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.08  E-value=1.9e-06  Score=72.48  Aligned_cols=97  Identities=21%  Similarity=0.288  Sum_probs=63.5

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--------CC--
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA--  234 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~--  234 (333)
                      .+.++||+||++|.++..+.+.+ +...|+|+|+.+..              ..+++..+++|+.+..        +.  
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~--------------~~~~~~~i~~d~~~~~~~~~i~~~~~~~   88 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD--------------PLQNVSFIQGDITNPENIKDIRKLLPES   88 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG--------------S-TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEeccccc--------------cccceeeeecccchhhHHHhhhhhcccc
Confidence            45799999999999999999987 44699999997750              0345666666664321        11  


Q ss_pred             CCCcceEEeccccccCCC----h-------HHHHHHHHHhccCCcEEEEEEec
Q 019957          235 SGFVDAVHAGAALHCWPS----P-------SNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d----~-------~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      .+.||+|++.....-..+    .       ...+.-+...|+|||.+++....
T Consensus        89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~  141 (181)
T PF01728_consen   89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK  141 (181)
T ss_dssp             TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred             ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence            268999999774333322    1       23455556789999999997755

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=98.08  E-value=1.5e-05  Score=66.33  Aligned_cols=108  Identities=19%  Similarity=0.347  Sum_probs=76.6

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc----CCCCCeEEEEccCCC-CCCCCCCcceE
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT----ILTSNLALVRADVCR-LPFASGFVDAV  241 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~----~~~~~i~~~~~d~~~-lp~~~~~fD~V  241 (333)
                      ...+.|||||.|.++..|+..+|+..+.|+||.-..-++.++++....-    ...+++.+...+... +|   +-|..-
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp---n~f~kg  137 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP---NFFEKG  137 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc---chhhhc
Confidence            3469999999999999999999999999999999999999888765321    013456666665543 23   223222


Q ss_pred             EeccccccCCChH-------------HHHHHHHHhccCCcEEEEEEecc
Q 019957          242 HAGAALHCWPSPS-------------NAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       242 ~~~~vl~h~~d~~-------------~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      ..+-.+..++||.             ..+.+..-+|++||.++..+-..
T Consensus       138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~  186 (249)
T KOG3115|consen  138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK  186 (249)
T ss_pred             ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence            2333333445552             56888999999999999887544

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.05  E-value=4.2e-05  Score=64.63  Aligned_cols=100  Identities=23%  Similarity=0.246  Sum_probs=72.4

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--------CCC
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FAS  235 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~~  235 (333)
                      .++..|+|+|+..|.++..+++.. ....|+|+|+.+-..              .+++.++++|+..-+        +..
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~--------------~~~V~~iq~d~~~~~~~~~l~~~l~~  109 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP--------------IPGVIFLQGDITDEDTLEKLLEALGG  109 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc--------------CCCceEEeeeccCccHHHHHHHHcCC
Confidence            457899999999999999998874 334599999976321              567999999997643        334


Q ss_pred             CCcceEEecccc--------ccCCCh---HHHHHHHHHhccCCcEEEEEEeccc
Q 019957          236 GFVDAVHAGAAL--------HCWPSP---SNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       236 ~~fD~V~~~~vl--------~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      ..+|+|++-..=        +|....   ..++.-+..+|+|||.+++-++...
T Consensus       110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~  163 (205)
T COG0293         110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE  163 (205)
T ss_pred             CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence            557999974332        221111   2456667789999999999886543

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.05  E-value=0.0003  Score=59.66  Aligned_cols=136  Identities=11%  Similarity=0.082  Sum_probs=99.4

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      ....+.+++..  +.++.||||-.+++..+|.+.++...+++.|+++.-++.|.+++...++  .+.++...+|....--
T Consensus         6 RL~~va~~V~~--~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l--~~~i~vr~~dgl~~l~   81 (226)
T COG2384           6 RLTTVANLVKQ--GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL--SERIDVRLGDGLAVLE   81 (226)
T ss_pred             HHHHHHHHHHc--CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC--cceEEEeccCCccccC
Confidence            34556666654  4569999999999999999999888999999999999999999999886  7889998888743212


Q ss_pred             CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCC
Q 019957          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCG  313 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aG  313 (333)
                      .+..+|+|+..++=.-  -....|++-.+.|+.=-++++...                        -...+++++|..++
T Consensus        82 ~~d~~d~ivIAGMGG~--lI~~ILee~~~~l~~~~rlILQPn------------------------~~~~~LR~~L~~~~  135 (226)
T COG2384          82 LEDEIDVIVIAGMGGT--LIREILEEGKEKLKGVERLILQPN------------------------IHTYELREWLSANS  135 (226)
T ss_pred             ccCCcCEEEEeCCcHH--HHHHHHHHhhhhhcCcceEEECCC------------------------CCHHHHHHHHHhCC
Confidence            3457999886554221  123456666666654334555321                        13468999999999


Q ss_pred             CcEEEE
Q 019957          314 LTNYTS  319 (333)
Q Consensus       314 f~~v~~  319 (333)
                      |.++.+
T Consensus       136 ~~I~~E  141 (226)
T COG2384         136 YEIKAE  141 (226)
T ss_pred             ceeeee
Confidence            998775

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.00  E-value=0.00055  Score=57.17  Aligned_cols=146  Identities=14%  Similarity=0.139  Sum_probs=98.0

Q ss_pred             cccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---CCCCCcc
Q 019957          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVD  239 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD  239 (333)
                      +..++.+||=+|+.+|.....++.--+...++++|+|+...+..-...+.     .+|+--+.+|+....   .--+..|
T Consensus        73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-----R~Ni~PIL~DA~~P~~Y~~~Ve~VD  147 (231)
T COG1889          73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-----RPNIIPILEDARKPEKYRHLVEKVD  147 (231)
T ss_pred             CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-----CCCceeeecccCCcHHhhhhccccc
Confidence            35678999999999999999999886567899999999776665555544     568888888886532   1134688


Q ss_pred             eEEeccccccCCChH---HHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcE
Q 019957          240 AVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN  316 (333)
Q Consensus       240 ~V~~~~vl~h~~d~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~  316 (333)
                      +|+.     .+..|.   -+..++...||+||.++++.-.+.-....- .+..            -.+-..-|++.||++
T Consensus       148 viy~-----DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~d-p~~v------------f~~ev~kL~~~~f~i  209 (231)
T COG1889         148 VIYQ-----DVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTAD-PEEV------------FKDEVEKLEEGGFEI  209 (231)
T ss_pred             EEEE-----ecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCC-HHHH------------HHHHHHHHHhcCcee
Confidence            8875     334443   457788899999998777654332111111 0000            123335677889999


Q ss_pred             EEEEEeCeE----EEEEEe
Q 019957          317 YTSKVQQSF----IMFAAQ  331 (333)
Q Consensus       317 v~~~~~~~~----~~~~a~  331 (333)
                      .+...-.+|    ++++++
T Consensus       210 ~e~~~LePye~DH~~i~~~  228 (231)
T COG1889         210 LEVVDLEPYEKDHALIVAK  228 (231)
T ss_pred             eEEeccCCcccceEEEEEe
Confidence            998776666    555554

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.99  E-value=7.4e-05  Score=67.84  Aligned_cols=87  Identities=22%  Similarity=0.274  Sum_probs=68.3

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++.++|||||++|.++..+.+.+.  .|+++|..+ +.....    .     .+++..+..|........+.+|.++|.
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~-l~~~L~----~-----~~~V~h~~~d~fr~~p~~~~vDwvVcD  277 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGP-MAQSLM----D-----TGQVEHLRADGFKFRPPRKNVDWLVCD  277 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechh-cCHhhh----C-----CCCEEEEeccCcccCCCCCCCCEEEEe
Confidence            4688999999999999999999975  999999654 222222    2     678888888876653236789999997


Q ss_pred             cccccCCChHHHHHHHHHhccCC
Q 019957          245 AALHCWPSPSNAVAEISRILRSG  267 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~Lkpg  267 (333)
                      .+    ..|.++.+-+.+.|..|
T Consensus       278 mv----e~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        278 MV----EKPARVAELMAQWLVNG  296 (357)
T ss_pred             cc----cCHHHHHHHHHHHHhcC
Confidence            66    56889999999999776

>PRK11827 hypothetical protein; Provisional

Probab=97.98  E-value=3.9e-06  Score=55.94  Aligned_cols=44  Identities=16%  Similarity=0.388  Sum_probs=36.8

Q ss_pred             cCeecccCCCccccccCCCCccccccccCceeeCCCCccccCcCCceeeeccc
Q 019957           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS  110 (333)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~  110 (333)
                      .+++.||.|+++|.....         ...+.|..|+..|++++|++.++.++
T Consensus         6 LeILaCP~ckg~L~~~~~---------~~~Lic~~~~laYPI~dgIPVlL~de   49 (60)
T PRK11827          6 LEIIACPVCNGKLWYNQE---------KQELICKLDNLAFPLRDGIPVLLETE   49 (60)
T ss_pred             HhheECCCCCCcCeEcCC---------CCeEECCccCeeccccCCccccCHHH
Confidence            468899999999976432         14799999999999999999999863

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.93  E-value=4.2e-05  Score=61.47  Aligned_cols=59  Identities=25%  Similarity=0.318  Sum_probs=51.0

Q ss_pred             eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      ++||||||.|.++..+++.++..+++++|+++.+.+.++++++.++   ..++.++...+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~---~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN---LPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC---CCcEEEEEeeeeC
Confidence            4899999999999999999876789999999999999999988766   3468888877654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.92  E-value=0.0002  Score=64.85  Aligned_cols=142  Identities=17%  Similarity=0.224  Sum_probs=96.9

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH--Hh--cCcCCCCCeEEEEccCCCC-CCCCCCcceE
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI--KQ--DNTILTSNLALVRADVCRL-PFASGFVDAV  241 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~--~~--~~~~~~~~i~~~~~d~~~l-p~~~~~fD~V  241 (333)
                      ..+||-+|.|.|.-++.+.+.-...+++-+|.+|.|++.+++..  ..  .|.-..++++++..|+.+. .-..+.||+|
T Consensus       290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v  369 (508)
T COG4262         290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV  369 (508)
T ss_pred             cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence            45899999999999999988633568999999999999999432  22  1222357899999998664 2234589999


Q ss_pred             EeccccccCCCh----------HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHh
Q 019957          242 HAGAALHCWPSP----------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTS  311 (333)
Q Consensus       242 ~~~~vl~h~~d~----------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~  311 (333)
                      +..     ++||          ..+...+.+.|+++|.+++..-..+.....               |   ..+..-+++
T Consensus       370 IVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~v---------------f---w~i~aTik~  426 (508)
T COG4262         370 IVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRV---------------F---WRIDATIKS  426 (508)
T ss_pred             EEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCce---------------e---eeehhHHHh
Confidence            864     3444          367788899999999999976444311110               0   135567788


Q ss_pred             CCCcEEEE----EEeCeEEEEEEe
Q 019957          312 CGLTNYTS----KVQQSFIMFAAQ  331 (333)
Q Consensus       312 aGf~~v~~----~~~~~~~~~~a~  331 (333)
                      +||.+.-.    -+++.|-++.+.
T Consensus       427 AG~~~~Pyhv~VPTFGeWGf~l~~  450 (508)
T COG4262         427 AGYRVWPYHVHVPTFGEWGFILAA  450 (508)
T ss_pred             CcceeeeeEEecCcccccceeecc
Confidence            88876442    235555444443

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.92  E-value=1.7e-05  Score=66.83  Aligned_cols=91  Identities=18%  Similarity=0.217  Sum_probs=70.6

Q ss_pred             cHHHHHHHHHhhccc-CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC
Q 019957          151 PDEEFKMAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (333)
                      ++.+...+....... ....|+|.-||.|..+..++..++  .|+++|+++.-+..|+++++..|+  ..+++|++||+.
T Consensus        78 pe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI--~~rItFI~GD~l  153 (263)
T KOG2730|consen   78 PEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGV--PDRITFICGDFL  153 (263)
T ss_pred             cHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecC--CceeEEEechHH
Confidence            444444444443322 345899999999999999999988  999999999999999999999998  569999999997


Q ss_pred             CC----CCCCCCcceEEecc
Q 019957          230 RL----PFASGFVDAVHAGA  245 (333)
Q Consensus       230 ~l----p~~~~~fD~V~~~~  245 (333)
                      ++    .+....+|+|+.+.
T Consensus       154 d~~~~lq~~K~~~~~vf~sp  173 (263)
T KOG2730|consen  154 DLASKLKADKIKYDCVFLSP  173 (263)
T ss_pred             HHHHHHhhhhheeeeeecCC
Confidence            64    34445577777653

>COG2835 Uncharacterized conserved protein [Function unknown]

Probab=97.88  E-value=8e-06  Score=53.78  Aligned_cols=45  Identities=22%  Similarity=0.542  Sum_probs=38.3

Q ss_pred             ccCeecccCCCccccccCCCCccccccccCceeeCCCCccccCcCCceeeeccc
Q 019957           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS  110 (333)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~  110 (333)
                      ..+++.||.|.++|......         +.+.|+.|+..|++.+|++.++..+
T Consensus         5 LLeiLaCP~~kg~L~~~~~~---------~~L~c~~~~~aYpI~dGIPvlL~~e   49 (60)
T COG2835           5 LLEILACPVCKGPLVYDEEK---------QELICPRCKLAYPIRDGIPVLLPDE   49 (60)
T ss_pred             hheeeeccCcCCcceEeccC---------CEEEecccCceeecccCccccCchh
Confidence            35789999999998765542         4899999999999999999999863

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.76  E-value=0.00021  Score=64.53  Aligned_cols=87  Identities=10%  Similarity=0.155  Sum_probs=70.0

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-  232 (333)
                      +.+.+.+.+...+++.++|.-+|.|..+..+.+..+...|+|+|.++.+++.+++++...    ..++.++.+++.++. 
T Consensus         8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~----~~R~~~i~~nF~~l~~   83 (305)
T TIGR00006         8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF----EGRVVLIHDNFANFFE   83 (305)
T ss_pred             hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc----CCcEEEEeCCHHHHHH
Confidence            345566667777888999999999999999998865579999999999999999988653    458999999998753 


Q ss_pred             ----CCCCCcceEEec
Q 019957          233 ----FASGFVDAVHAG  244 (333)
Q Consensus       233 ----~~~~~fD~V~~~  244 (333)
                          ....++|.|++.
T Consensus        84 ~l~~~~~~~vDgIl~D   99 (305)
T TIGR00006        84 HLDELLVTKIDGILVD   99 (305)
T ss_pred             HHHhcCCCcccEEEEe
Confidence                123578998874

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.64  E-value=0.001  Score=57.18  Aligned_cols=139  Identities=17%  Similarity=0.212  Sum_probs=90.2

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEE-EEccCCCCC---CCCCCcc
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL-VRADVCRLP---FASGFVD  239 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~-~~~d~~~lp---~~~~~fD  239 (333)
                      ..++..+||||+.||.|+..+.++| ...|+++|..-..+..--+   .     .+++.. ...++..+.   +. +..|
T Consensus        77 ~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR---~-----d~rV~~~E~tN~r~l~~~~~~-~~~d  146 (245)
T COG1189          77 DVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLR---N-----DPRVIVLERTNVRYLTPEDFT-EKPD  146 (245)
T ss_pred             CCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHh---c-----CCcEEEEecCChhhCCHHHcc-cCCC
Confidence            4568899999999999999999997 5699999998766654332   1     445443 345555442   22 3678


Q ss_pred             eEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHh----hhccCCCCCHHHHHHHHHhCCCc
Q 019957          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER----ILQNYNYLTEEEIEDLCTSCGLT  315 (333)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~t~~~l~~ll~~aGf~  315 (333)
                      ++++.-++-   ....+|..+..++++++.++...-...    .. ++.....    .....+---..++.+++.+.||+
T Consensus       147 ~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~LvKPQF----Ea-gr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~  218 (245)
T COG1189         147 LIVIDVSFI---SLKLILPALLLLLKDGGDLVLLVKPQF----EA-GREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQ  218 (245)
T ss_pred             eEEEEeehh---hHHHHHHHHHHhcCCCceEEEEecchh----hh-hhhhcCcCceecCcchHHHHHHHHHHHHhhcCcE
Confidence            888865544   346779999999999998877542111    00 1111110    00112223357888999999999


Q ss_pred             EEEEE
Q 019957          316 NYTSK  320 (333)
Q Consensus       316 ~v~~~  320 (333)
                      +....
T Consensus       219 ~~gl~  223 (245)
T COG1189         219 VKGLI  223 (245)
T ss_pred             EeeeE
Confidence            87753

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.64  E-value=1.4e-05  Score=60.81  Aligned_cols=100  Identities=17%  Similarity=0.243  Sum_probs=42.6

Q ss_pred             EEEcCCcCHHHHHHHHhCCC---CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-C-CCCCCcceEEecc
Q 019957          171 VDVSCGSGLFSRKFAKSGTY---SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-FASGFVDAVHAGA  245 (333)
Q Consensus       171 LDiGcG~G~~~~~l~~~~~~---~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-~~~~~fD~V~~~~  245 (333)
                      ||||+..|..+..+++....   .+++++|..+. .+..++.+++.++  ..++.++.++..+. + +..++||+|+.-.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~--~~~~~~~~g~s~~~l~~~~~~~~dli~iDg   77 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL--SDRVEFIQGDSPDFLPSLPDGPIDLIFIDG   77 (106)
T ss_dssp             --------------------------EEEESS-------------GGG---BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC--CCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence            69999999988887765322   27999999985 2333333333333  45799999998643 2 3357999999865


Q ss_pred             ccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          246 ALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      . |..+.....+..+.+.|+|||++++-+
T Consensus        78 ~-H~~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   78 D-HSYEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             C-CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            2 111233466888889999999998864

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.63  E-value=7e-05  Score=70.74  Aligned_cols=76  Identities=17%  Similarity=0.298  Sum_probs=65.1

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      .+.....+.++.....+..+||+-||||.++..+++...  .|+|+++++.+++.|+.+...+|   ..|.+|+++-+++
T Consensus       368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~Ng---isNa~Fi~gqaE~  442 (534)
T KOG2187|consen  368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQING---ISNATFIVGQAED  442 (534)
T ss_pred             HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhcC---ccceeeeecchhh
Confidence            445557777888877788999999999999999998754  99999999999999999999888   6799999996655


Q ss_pred             C
Q 019957          231 L  231 (333)
Q Consensus       231 l  231 (333)
                      +
T Consensus       443 ~  443 (534)
T KOG2187|consen  443 L  443 (534)
T ss_pred             c
Confidence            3

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=97.54  E-value=0.00079  Score=62.22  Aligned_cols=113  Identities=18%  Similarity=0.174  Sum_probs=85.2

Q ss_pred             hcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---CCCCC
Q 019957          162 FKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF  237 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~  237 (333)
                      +.++++.+|||..+..|.=+.+++..- ....+++.|.+...++..+.++.+.|   ..+..+...|..++|   +.. +
T Consensus       237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG---v~ntiv~n~D~~ef~~~~~~~-~  312 (460)
T KOG1122|consen  237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG---VTNTIVSNYDGREFPEKEFPG-S  312 (460)
T ss_pred             cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC---CCceEEEccCcccccccccCc-c
Confidence            467889999999999987666665542 23489999999999999999999988   567777888887665   444 8


Q ss_pred             cceEEe----cc--ccccC----------------CChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957          238 VDAVHA----GA--ALHCW----------------PSPSNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       238 fD~V~~----~~--vl~h~----------------~d~~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      ||-|+.    ++  ++.--                .-.+++|..+...+++||+|+.+|-...
T Consensus       313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~  375 (460)
T KOG1122|consen  313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT  375 (460)
T ss_pred             cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence            999985    33  33211                0124677788899999999999986654

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.46  E-value=0.00067  Score=60.96  Aligned_cols=95  Identities=12%  Similarity=0.063  Sum_probs=53.3

Q ss_pred             HHHHHHHhhcccC-----CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-CcCCCCCeEEEEcc
Q 019957          154 EFKMAQEYFKSAQ-----GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRAD  227 (333)
Q Consensus       154 ~~~~~~~~l~~~~-----~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d  227 (333)
                      .+..+.+++....     ..++||||+|....-..|.....+.+++|+|+++..++.|++++..+ ++  ..+|.++...
T Consensus        85 Yi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L--~~~I~l~~~~  162 (299)
T PF05971_consen   85 YIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL--ESRIELRKQK  162 (299)
T ss_dssp             HHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T---TTTEEEEE--
T ss_pred             HHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc--ccceEEEEcC
Confidence            3455566665322     35799999998754322322211449999999999999999999988 76  6788887653


Q ss_pred             CCC-----CCCCCCCcceEEeccccccC
Q 019957          228 VCR-----LPFASGFVDAVHAGAALHCW  250 (333)
Q Consensus       228 ~~~-----lp~~~~~fD~V~~~~vl~h~  250 (333)
                      -..     +-..++.||+.+|+--++..
T Consensus       163 ~~~~i~~~i~~~~e~~dftmCNPPFy~s  190 (299)
T PF05971_consen  163 NPDNIFDGIIQPNERFDFTMCNPPFYSS  190 (299)
T ss_dssp             ST-SSTTTSTT--S-EEEEEE-----SS
T ss_pred             CccccchhhhcccceeeEEecCCccccC
Confidence            321     11234689999998766654

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.40  E-value=0.00095  Score=53.01  Aligned_cols=85  Identities=19%  Similarity=0.259  Sum_probs=58.8

Q ss_pred             eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--CCCCCcceEEeccc-ccc-----CCCh---HHHHHHH
Q 019957          192 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAGAA-LHC-----WPSP---SNAVAEI  260 (333)
Q Consensus       192 ~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~~v-l~h-----~~d~---~~~l~~~  260 (333)
                      +|+|+|+-+.+++..++++++.++  ..++.++..+=+.+.  .+.+++|+++.+.. |-.     +..+   ..+|+.+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~--~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a   78 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGL--EDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA   78 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT---GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCC--CCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence            589999999999999999999875  568999998887765  22348999887532 211     1233   3678888


Q ss_pred             HHhccCCcEEEEEEeccc
Q 019957          261 SRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       261 ~r~LkpgG~l~i~~~~~~  278 (333)
                      .++|+|||++.++.+...
T Consensus        79 l~lL~~gG~i~iv~Y~GH   96 (140)
T PF06962_consen   79 LELLKPGGIITIVVYPGH   96 (140)
T ss_dssp             HHHEEEEEEEEEEE--ST
T ss_pred             HHhhccCCEEEEEEeCCC
Confidence            899999999999886543

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.39  E-value=0.0013  Score=54.23  Aligned_cols=100  Identities=16%  Similarity=0.173  Sum_probs=67.6

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc-cCCCC--------CCC
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRL--------PFA  234 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~l--------p~~  234 (333)
                      .++.+|||+||..|.++..+.++ +|++-|.|+|+-.-         .     +..++.++++ |+.+.        ..+
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~---------~-----p~~Ga~~i~~~dvtdp~~~~ki~e~lp  133 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI---------E-----PPEGATIIQGNDVTDPETYRKIFEALP  133 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec---------c-----CCCCcccccccccCCHHHHHHHHHhCC
Confidence            46889999999999999988887 58889999997321         1     1445666666 66542        134


Q ss_pred             CCCcceEEecccccc----CCChH-------HHHHHHHHhccCCcEEEEEEeccc
Q 019957          235 SGFVDAVHAGAALHC----WPSPS-------NAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h----~~d~~-------~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      +...|+|++...-.-    +.|..       .++.-....++|+|.++.-.+...
T Consensus       134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~  188 (232)
T KOG4589|consen  134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS  188 (232)
T ss_pred             CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence            678999998543211    11222       234444566789999999887653

>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function

Probab=97.37  E-value=0.0001  Score=51.29  Aligned_cols=46  Identities=24%  Similarity=0.540  Sum_probs=30.4

Q ss_pred             ccCeecccCCCcccccc---CC----------------CCccccccccCceeeCCCCccccCcCC
Q 019957           57 EGDLFSCPICYEPLIRK---GP----------------TGLTLGAIYRSGFKCRKCDKTYSSKDN  102 (333)
Q Consensus        57 ~~~~l~CP~C~~~l~~~---~~----------------~~~~~~~~~~~~~~C~~C~~~~~~~~g  102 (333)
                      .-++++||.|+++|...   ..                ...-...+..|.+.|++||+.|++.+|
T Consensus         4 llniL~Cp~ck~pL~~~~l~~~~~~~~~~lp~~~~~~~~~l~~~~i~eg~L~Cp~c~r~YPI~dG   68 (68)
T PF03966_consen    4 LLNILACPVCKGPLDWEALVETAQLGLSELPKELPEDYHVLLEVEIVEGELICPECGREYPIRDG   68 (68)
T ss_dssp             GCGTBB-TTTSSBEHHHHHHHHHHCCCCHCHHCHHCHCEHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred             HHhhhcCCCCCCcchHHHHHHHHHhCcccCCCCCccchhhhhcccccCCEEEcCCCCCEEeCCCC
Confidence            45789999999988000   00                000012566789999999999999876

The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.36  E-value=0.00081  Score=63.78  Aligned_cols=117  Identities=20%  Similarity=0.266  Sum_probs=79.1

Q ss_pred             CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCH----HHHHHHHHHHHhcCcCCCCCeEEEEccC-CCCCCCCCCcceEE
Q 019957          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE----NMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVDAVH  242 (333)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~----~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~V~  242 (333)
                      ..|+|..+|.|.|+.+|.+.    .|..+..-+    +.+....+    .|+     |. +..|. +.++.-+.+||+|.
T Consensus       367 RNVMDMnAg~GGFAAAL~~~----~VWVMNVVP~~~~ntL~vIyd----RGL-----IG-~yhDWCE~fsTYPRTYDLlH  432 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDD----PVWVMNVVPVSGPNTLPVIYD----RGL-----IG-VYHDWCEAFSTYPRTYDLLH  432 (506)
T ss_pred             eeeeeecccccHHHHHhccC----CceEEEecccCCCCcchhhhh----ccc-----ch-hccchhhccCCCCcchhhee
Confidence            45999999999999999865    244444333    23332222    121     11 22233 44565578999999


Q ss_pred             eccccccCCC---hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957          243 AGAALHCWPS---PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       243 ~~~vl~h~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~  319 (333)
                      +.+++.+..+   ...+|-|+.|+|+|||.+++.+...                       ..++++.++.+..++....
T Consensus       433 A~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~-----------------------vl~~v~~i~~~lrW~~~~~  489 (506)
T PF03141_consen  433 ADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD-----------------------VLEKVKKIAKSLRWEVRIH  489 (506)
T ss_pred             hhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH-----------------------HHHHHHHHHHhCcceEEEE
Confidence            9998877653   4688999999999999999977321                       1357778888888876554


Q ss_pred             EE
Q 019957          320 KV  321 (333)
Q Consensus       320 ~~  321 (333)
                      ..
T Consensus       490 d~  491 (506)
T PF03141_consen  490 DT  491 (506)
T ss_pred             ec
Confidence            33

; GO: 0008168 methyltransferase activity

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.28  E-value=0.0008  Score=57.04  Aligned_cols=114  Identities=11%  Similarity=0.117  Sum_probs=58.7

Q ss_pred             HHHhhcccCCCeEEEEcCCcCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-
Q 019957          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (333)
Q Consensus       158 ~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-  232 (333)
                      +.+++-..++..|+|+|.-.|..+..++..    +...+|+|+|++.......  ..+....  .++|++++||..+.. 
T Consensus        24 ~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~--~~rI~~i~Gds~d~~~   99 (206)
T PF04989_consen   24 YQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPM--SPRITFIQGDSIDPEI   99 (206)
T ss_dssp             HHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG------TTEEEEES-SSSTHH
T ss_pred             HHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccc--cCceEEEECCCCCHHH
Confidence            334444445679999999998777655542    3567999999964322111  1111111  479999999987642 


Q ss_pred             ---CC----CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          233 ---FA----SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       233 ---~~----~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                         ..    ...-.+|+. .+=|...+-.+.|+....++++|+++++.+..
T Consensus       100 ~~~v~~~~~~~~~vlVil-Ds~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~  149 (206)
T PF04989_consen  100 VDQVRELASPPHPVLVIL-DSSHTHEHVLAELEAYAPLVSPGSYLIVEDTI  149 (206)
T ss_dssp             HHTSGSS----SSEEEEE-SS----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred             HHHHHHhhccCCceEEEE-CCCccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence               11    122334443 33233345577788899999999999997754

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.25  E-value=0.0008  Score=58.50  Aligned_cols=136  Identities=15%  Similarity=0.113  Sum_probs=82.2

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccc
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (333)
                      +.+|+|||||.--++.......+...++|+|++..+++.....+...+    ...++...|+..-+ +....|+.++.-+
T Consensus       106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~----~~~~~~v~Dl~~~~-~~~~~DlaLllK~  180 (251)
T PF07091_consen  106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG----VPHDARVRDLLSDP-PKEPADLALLLKT  180 (251)
T ss_dssp             -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-----CEEEEEE-TTTSH-TTSEESEEEEET-
T ss_pred             CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC----CCcceeEeeeeccC-CCCCcchhhHHHH
Confidence            679999999998888877776667799999999999999999887764    46777777886653 2567999999888


Q ss_pred             cccCCChH--HHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957          247 LHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       247 l~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                      ++-+....  ..++-+ ..++ .=.++++.|....      ++.-. .+..    .-..+++.++...|+.+-+..
T Consensus       181 lp~le~q~~g~g~~ll-~~~~-~~~~vVSfPtrSL------~gR~~-gm~~----~y~~~fe~~~~~~~~~~~~~~  243 (251)
T PF07091_consen  181 LPCLERQRRGAGLELL-DALR-SPHVVVSFPTRSL------GGRNK-GMEQ----TYSAWFEALAAERGWIVDRLT  243 (251)
T ss_dssp             HHHHHHHSTTHHHHHH-HHSC-ESEEEEEEES-------------T-THHH----CHHHHHHHHCCTTCEEEEEEE
T ss_pred             HHHHHHHhcchHHHHH-HHhC-CCeEEEecccccc------ccCcc-cccc----CHHHHHHHhcccCCceeeeee
Confidence            77654332  112222 2222 2345555554421      11100 0000    113577888888888855433

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.23  E-value=0.00076  Score=60.89  Aligned_cols=112  Identities=15%  Similarity=0.065  Sum_probs=73.8

Q ss_pred             cccCCCeEEEEcCCcCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC----CCCCCCCCC
Q 019957          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV----CRLPFASGF  237 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~----~~lp~~~~~  237 (333)
                      .....++|||+|.|.|.-+.++....|+ .+++.++.|+..-+..........   .....+...|+    ..+|. ...
T Consensus       110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~---t~~td~r~s~vt~dRl~lp~-ad~  185 (484)
T COG5459         110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS---TEKTDWRASDVTEDRLSLPA-ADL  185 (484)
T ss_pred             CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc---cccCCCCCCccchhccCCCc-cce
Confidence            3445678999999999888888777765 357888888876655554433222   11222333333    33342 346


Q ss_pred             cceEEeccccccCCChH---HHHHHHHHhccCCcEEEEEEeccc
Q 019957          238 VDAVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       238 fD~V~~~~vl~h~~d~~---~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      |++|+..+-|-|..++.   ..++.+..++.|||.|++++...+
T Consensus       186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp  229 (484)
T COG5459         186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP  229 (484)
T ss_pred             eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence            77777666665554443   468888899999999999998764

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.21  E-value=0.0025  Score=50.53  Aligned_cols=119  Identities=15%  Similarity=0.204  Sum_probs=83.6

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC
Q 019957          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (333)
                      +...+.++.++.++...+.++.+|+|+|.|......++.+ -...+|+|+++-.+.+++-..-+.|.  .....|..-|+
T Consensus        55 pAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~--~k~trf~Rkdl  131 (199)
T KOG4058|consen   55 PATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGC--AKSTRFRRKDL  131 (199)
T ss_pred             CccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhc--ccchhhhhhhh
Confidence            3345566777778877777899999999999999998887 34789999999999888877666665  66788888898


Q ss_pred             CCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ....+.+-.+-+|+  .+=.-++|.   -.++..-|..|..++-.-+
T Consensus       132 wK~dl~dy~~vviF--gaes~m~dL---e~KL~~E~p~nt~vvacRF  173 (199)
T KOG4058|consen  132 WKVDLRDYRNVVIF--GAESVMPDL---EDKLRTELPANTRVVACRF  173 (199)
T ss_pred             hhccccccceEEEe--ehHHHHhhh---HHHHHhhCcCCCeEEEEec
Confidence            88776654444443  332222333   2344445666777666543

>PRK10742 putative methyltransferase; Provisional

Probab=97.16  E-value=0.003  Score=55.11  Aligned_cols=92  Identities=15%  Similarity=0.042  Sum_probs=68.4

Q ss_pred             HHHHHhhcccCCC--eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc------CcCCCCCeEEEEcc
Q 019957          156 KMAQEYFKSAQGG--LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD------NTILTSNLALVRAD  227 (333)
Q Consensus       156 ~~~~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~------~~~~~~~i~~~~~d  227 (333)
                      +.+.+.+...++.  +|||.-+|+|..+..++..|.  +|+++|.++......++.+...      +.....++.++.+|
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d  153 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS  153 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence            4555666655655  899999999999999999875  7999999999988888877763      11001568888888


Q ss_pred             CCCC-CCCCCCcceEEecccccc
Q 019957          228 VCRL-PFASGFVDAVHAGAALHC  249 (333)
Q Consensus       228 ~~~l-p~~~~~fD~V~~~~vl~h  249 (333)
                      .... .-...+||+|++-=.+.|
T Consensus       154 a~~~L~~~~~~fDVVYlDPMfp~  176 (250)
T PRK10742        154 SLTALTDITPRPQVVYLDPMFPH  176 (250)
T ss_pred             HHHHHhhCCCCCcEEEECCCCCC
Confidence            8653 212347999998766665

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.01  E-value=0.072  Score=46.26  Aligned_cols=133  Identities=15%  Similarity=0.072  Sum_probs=72.6

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CCCC-CCCcceEE
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFA-SGFVDAVH  242 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~-~~~fD~V~  242 (333)
                      ..+++||-+|=.. ..+..++..+...+++.+|+++..+++.++..++.|+    .++.+..|+.+ +|-. .++||+++
T Consensus        43 L~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl----~i~~~~~DlR~~LP~~~~~~fD~f~  117 (243)
T PF01861_consen   43 LEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL----PIEAVHYDLRDPLPEELRGKFDVFF  117 (243)
T ss_dssp             STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTTSS-BSEEE
T ss_pred             ccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC----ceEEEEecccccCCHHHhcCCCEEE
Confidence            3578999998333 3444445455567999999999999999999988874    49999999955 5522 57999999


Q ss_pred             eccccccCCChHHHHHHHHHhccCCc-EEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957          243 AGAALHCWPSPSNAVAEISRILRSGG-VFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG-~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~  321 (333)
                      ..-. +-..-..-++......||..| ..++.-......     ...             ..++++.+.+.||.+.....
T Consensus       118 TDPP-yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s-----~~~-------------~~~~Q~~l~~~gl~i~dii~  178 (243)
T PF01861_consen  118 TDPP-YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEAS-----PDK-------------WLEVQRFLLEMGLVITDIIP  178 (243)
T ss_dssp             E----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT-------HHH-------------HHHHHHHHHTS--EEEEEEE
T ss_pred             eCCC-CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCc-----HHH-------------HHHHHHHHHHCCcCHHHHHh
Confidence            7311 000011457788888898656 444433222110     000             13677888899998766543

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.00  E-value=0.0016  Score=58.82  Aligned_cols=84  Identities=18%  Similarity=0.292  Sum_probs=61.5

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---  232 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---  232 (333)
                      +.+.+.+.+.+++.++|.--|.|..+..+.+..+...++|+|.++.+++.+++++...    ..++.++.+++.++.   
T Consensus        10 ~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~----~~r~~~~~~~F~~l~~~l   85 (310)
T PF01795_consen   10 KEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF----DDRFIFIHGNFSNLDEYL   85 (310)
T ss_dssp             HHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC----CTTEEEEES-GGGHHHHH
T ss_pred             HHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc----cceEEEEeccHHHHHHHH
Confidence            4455667777888999999999999999999877789999999999999999877653    468999999998764   


Q ss_pred             --C-CCCCcceEEe
Q 019957          233 --F-ASGFVDAVHA  243 (333)
Q Consensus       233 --~-~~~~fD~V~~  243 (333)
                        . .-.++|.|++
T Consensus        86 ~~~~~~~~~dgiL~   99 (310)
T PF01795_consen   86 KELNGINKVDGILF   99 (310)
T ss_dssp             HHTTTTS-EEEEEE
T ss_pred             HHccCCCccCEEEE
Confidence              2 2347888876

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=96.96  E-value=0.013  Score=54.84  Aligned_cols=148  Identities=12%  Similarity=0.131  Sum_probs=82.9

Q ss_pred             CCeEEEEcCCcCHHHHHHH--------Hh-------CCCCeEEEEeCCHHHHHHHHHHHHhc--------C-cC-CCCCe
Q 019957          167 GGLLVDVSCGSGLFSRKFA--------KS-------GTYSGVVALDFSENMLRQCYDFIKQD--------N-TI-LTSNL  221 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~--------~~-------~~~~~v~g~D~s~~~~~~a~~~~~~~--------~-~~-~~~~i  221 (333)
                      ..+|+|+|||+|.++..+.        ++       -|..+|+.-|.-.+-....-+.+...        . +. ...+.
T Consensus        64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~  143 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS  143 (386)
T ss_pred             ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence            5589999999997765442        21       13457777776432222221111110        0 00 00011


Q ss_pred             EEE---EccCCCCCCCCCCcceEEeccccccCCCh--------------------------------------HHHHHHH
Q 019957          222 ALV---RADVCRLPFASGFVDAVHAGAALHCWPSP--------------------------------------SNAVAEI  260 (333)
Q Consensus       222 ~~~---~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--------------------------------------~~~l~~~  260 (333)
                      -|+   .+.+..--|++++.++++++..||++...                                      ..+|+.=
T Consensus       144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R  223 (386)
T PLN02668        144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR  223 (386)
T ss_pred             eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            122   23443334778999999999999987531                                      1233334


Q ss_pred             HHhccCCcEEEEEEecccCCC---c-----ch---hhHHHHH-------------hhhccCCCCCHHHHHHHHHhCCC
Q 019957          261 SRILRSGGVFVGTTFLRYTSS---T-----SL---TGRVLRE-------------RILQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       261 ~r~LkpgG~l~i~~~~~~~~~---~-----~~---~~~~~~~-------------~~~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      .+-|.|||++++....+.+..   .     .|   +...|..             ...-..++.+.+|+++.+++.|-
T Consensus       224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gs  301 (386)
T PLN02668        224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGS  301 (386)
T ss_pred             HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCC
Confidence            567889999999987764211   0     01   1111111             11144667889999999998885

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.95  E-value=0.012  Score=53.87  Aligned_cols=97  Identities=20%  Similarity=0.236  Sum_probs=68.2

Q ss_pred             cccCCCeEEEEcCC-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc-CCCCCCCCCCcce
Q 019957          163 KSAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-VCRLPFASGFVDA  240 (333)
Q Consensus       163 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d-~~~lp~~~~~fD~  240 (333)
                      ...++.+|+=+|+| .|..+..+++.. ..+|+++|.+++-++.|++.         ..-.++... ......-.+.||+
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~l---------GAd~~i~~~~~~~~~~~~~~~d~  232 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKL---------GADHVINSSDSDALEAVKEIADA  232 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHh---------CCcEEEEcCCchhhHHhHhhCcE
Confidence            45678899999987 357788888854 26999999999999999874         222334332 2122211234999


Q ss_pred             EEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      |+..-.       ...+....+.|++||.+++.-..
T Consensus       233 ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         233 IIDTVG-------PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             EEECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence            987654       34578888999999999997765

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.85  E-value=0.024  Score=55.14  Aligned_cols=147  Identities=18%  Similarity=0.108  Sum_probs=101.3

Q ss_pred             cchhHHHHhhHHhhccc-----CCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC----CCeEEEEeCC
Q 019957          129 PFVSFLYERGWRQNFNR-----SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT----YSGVVALDFS  199 (333)
Q Consensus       129 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~----~~~v~g~D~s  199 (333)
                      +.++..|+...+.....     +.++.+....+.+.+.+.+.+..+|.|..||+|.++....+...    ...++|.|++
T Consensus       144 d~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~  223 (489)
T COG0286         144 DLFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIN  223 (489)
T ss_pred             cchhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCC
Confidence            45556666655544322     44788999999999999887777999999999988776655421    2579999999


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-C----CCCCcceEEeccccc---cC-------C-------------
Q 019957          200 ENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F----ASGFVDAVHAGAALH---CW-------P-------------  251 (333)
Q Consensus       200 ~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~----~~~~fD~V~~~~vl~---h~-------~-------------  251 (333)
                      +.....++.++--.|+.  ..+....+|-..-| .    ..+.||+|+++--+.   +.       .             
T Consensus       224 ~~t~~l~~mN~~lhgi~--~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (489)
T COG0286         224 DTTYRLAKMNLILHGIE--GDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTK  301 (489)
T ss_pred             HHHHHHHHHHHHHhCCC--ccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCC
Confidence            99999999988777642  13455555543333 2    336799988742221   11       0             


Q ss_pred             -Ch-HHHHHHHHHhccCCcEEEEEEecc
Q 019957          252 -SP-SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       252 -d~-~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                       .. ...+..+...|+|||+.-+..+..
T Consensus       302 ~~~~~af~~h~~~~l~~~g~aaivl~~g  329 (489)
T COG0286         302 NSADLAFLQHILYKLKPGGRAAIVLPDG  329 (489)
T ss_pred             CchHHHHHHHHHHhcCCCceEEEEecCC
Confidence             01 467899999999999776666543

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=96.81  E-value=0.015  Score=50.91  Aligned_cols=110  Identities=16%  Similarity=0.054  Sum_probs=70.6

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC---CCCCeEEEEccCCCC---CCCCCC-cc
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---LTSNLALVRADVCRL---PFASGF-VD  239 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~---~~~~i~~~~~d~~~l---p~~~~~-fD  239 (333)
                      ...|||+|+|+|.-+..++... ..+|.-.|+.. .+.....+...++..   ....+.+...+....   .+.... ||
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D  164 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLL-GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD  164 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHh-cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence            4579999999997776666643 45888888644 222333222211110   011333333333322   122334 99


Q ss_pred             eEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      +|+++.++.+-..+..++.-++..|..+|.+++..+.+.
T Consensus       165 lilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~  203 (248)
T KOG2793|consen  165 LILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR  203 (248)
T ss_pred             EEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence            999999999988888889999999999998888776654

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=96.80  E-value=0.0012  Score=53.18  Aligned_cols=101  Identities=14%  Similarity=0.176  Sum_probs=61.6

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHH-HHHHHHHhcCcCCCCCeEEEEccCC-CCCCCCCCcceEEec
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLR-QCYDFIKQDNTILTSNLALVRADVC-RLPFASGFVDAVHAG  244 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~-~a~~~~~~~~~~~~~~i~~~~~d~~-~lp~~~~~fD~V~~~  244 (333)
                      +.+.|-+|...=+.=......| ...+..+|.++-.+. ..+.+          -..+...|+. +..-..++||++.+.
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~G-A~~iltveyn~L~i~~~~~dr----------~ssi~p~df~~~~~~y~~~fD~~as~   70 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHG-AAKILTVEYNKLEIQEEFRDR----------LSSILPVDFAKNWQKYAGSFDFAASF   70 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcC-CceEEEEeecccccCcccccc----------cccccHHHHHHHHHHhhccchhhhee
Confidence            4567777777544444444444 557888886542111 01111          0111122221 111124689999999


Q ss_pred             cccccCC-----Ch------HHHHHHHHHhccCCcEEEEEEeccc
Q 019957          245 AALHCWP-----SP------SNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       245 ~vl~h~~-----d~------~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      +++||+.     ||      .+.+.++.++|||||.|++..|...
T Consensus        71 ~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~  115 (177)
T PF03269_consen   71 SSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT  115 (177)
T ss_pred             chhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence            9999973     33      3678899999999999999999875

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.80  E-value=0.011  Score=52.72  Aligned_cols=86  Identities=17%  Similarity=0.265  Sum_probs=69.5

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (333)
                      +.....+.+.+.+++..+|.--|.|..+..+.+.++. ..++|+|.++.+++.|++++...    ..++.++.+.+.++.
T Consensus        11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~----~~r~~~v~~~F~~l~   86 (314)
T COG0275          11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF----DGRVTLVHGNFANLA   86 (314)
T ss_pred             HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc----CCcEEEEeCcHHHHH
Confidence            3455666778888899999999999999999998753 46999999999999999998775    458999999887653


Q ss_pred             -----CCCCCcceEEe
Q 019957          233 -----FASGFVDAVHA  243 (333)
Q Consensus       233 -----~~~~~fD~V~~  243 (333)
                           ..-+++|.|+.
T Consensus        87 ~~l~~~~i~~vDGiL~  102 (314)
T COG0275          87 EALKELGIGKVDGILL  102 (314)
T ss_pred             HHHHhcCCCceeEEEE
Confidence                 22357787775

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=96.71  E-value=0.024  Score=52.40  Aligned_cols=149  Identities=20%  Similarity=0.161  Sum_probs=74.6

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHh--------C--------CCCeEEEEeCCHHHHHHHHHHHHhcC--cCCCCCe--EEEE
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKS--------G--------TYSGVVALDFSENMLRQCYDFIKQDN--TILTSNL--ALVR  225 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~--------~--------~~~~v~g~D~s~~~~~~a~~~~~~~~--~~~~~~i--~~~~  225 (333)
                      ..-+|+|+||..|.++..+...        +        |..+|+--|.-.+-....-+.+....  ....+++  .-+-
T Consensus        16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp   95 (334)
T PF03492_consen   16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP   95 (334)
T ss_dssp             TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred             CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence            3458999999999988755431        1        22478888864322211111111100  0001222  3344


Q ss_pred             ccCCCCCCCCCCcceEEeccccccCCC-h-----------------------H---------------HHHHHHHHhccC
Q 019957          226 ADVCRLPFASGFVDAVHAGAALHCWPS-P-----------------------S---------------NAVAEISRILRS  266 (333)
Q Consensus       226 ~d~~~lp~~~~~fD~V~~~~vl~h~~d-~-----------------------~---------------~~l~~~~r~Lkp  266 (333)
                      +.+..--|++++.|+++++..||++.. |                       .               .+|+.=.+-|+|
T Consensus        96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~  175 (334)
T PF03492_consen   96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP  175 (334)
T ss_dssp             S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred             chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence            666554577999999999999998742 1                       1               123334567889


Q ss_pred             CcEEEEEEecccCCCc---------chhhHHHHH-------------hhhccCCCCCHHHHHHHHHhCCC
Q 019957          267 GGVFVGTTFLRYTSST---------SLTGRVLRE-------------RILQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       267 gG~l~i~~~~~~~~~~---------~~~~~~~~~-------------~~~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      ||++++..+.+.....         ..+...|..             ...-..++.+.+|++..+++.|-
T Consensus       176 GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gs  245 (334)
T PF03492_consen  176 GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGS  245 (334)
T ss_dssp             EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTS
T ss_pred             CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCC
Confidence            9999999987764110         111222221             01144567889999999988873

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=96.66  E-value=0.025  Score=51.88  Aligned_cols=115  Identities=20%  Similarity=0.166  Sum_probs=81.6

Q ss_pred             hhcccCCCeEEEEcCCcCHHHHHHHHhCCC----CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC---
Q 019957          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTY----SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---  233 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~----~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---  233 (333)
                      .+...++.+|||..+..|.=+..+.+....    ..+++=|.+...+...+..+....   .+++.+...|+...|-   
T Consensus       150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~---~~~~~v~~~~~~~~p~~~~  226 (375)
T KOG2198|consen  150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP---SPNLLVTNHDASLFPNIYL  226 (375)
T ss_pred             hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC---Ccceeeecccceecccccc
Confidence            345678999999999999988888776432    279999999998888888775544   4566666666655441   


Q ss_pred             ------CCCCcceEEec------cccccCCCh-----------------HHHHHHHHHhccCCcEEEEEEeccc
Q 019957          234 ------ASGFVDAVHAG------AALHCWPSP-----------------SNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       234 ------~~~~fD~V~~~------~vl~h~~d~-----------------~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                            ....||-|++.      .++.+-++.                 ..+|+.-.++||+||.++.+|-...
T Consensus       227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn  300 (375)
T KOG2198|consen  227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN  300 (375)
T ss_pred             ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence                  23469988862      333333222                 2467788899999999999986543

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=96.63  E-value=0.001  Score=40.13  Aligned_cols=36  Identities=19%  Similarity=0.491  Sum_probs=24.3

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      +.++||.|+..+......   ++ .....++|++|++.|.
T Consensus         1 M~i~CP~C~~~f~v~~~~---l~-~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    1 MIITCPNCQTRFRVPDDK---LP-AGGRKVRCPKCGHVFR   36 (37)
T ss_pred             CEEECCCCCceEEcCHHH---cc-cCCcEEECCCCCcEee
Confidence            468999999976443320   11 1124899999999884

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=96.56  E-value=0.1  Score=46.45  Aligned_cols=160  Identities=8%  Similarity=-0.031  Sum_probs=95.2

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCC-HHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-C--
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS-ENMLRQCYDFIKQDNTILTSNLALVRADVCR-L--  231 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s-~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-l--  231 (333)
                      +.+.+.+... ...|+.+|||.=.....+.. ..  .+..+|++ ++.++.=++.+.+.+.....+..++..|+.. +  
T Consensus        72 ~~i~~~~~~g-~~qvV~LGaGlDTr~~Rl~~-~~--~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~  147 (260)
T TIGR00027        72 DFLLAAVAAG-IRQVVILGAGLDTRAYRLPW-PD--GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPA  147 (260)
T ss_pred             HHHHHHHhcC-CcEEEEeCCccccHHHhcCC-CC--CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHH
Confidence            3444444433 34799999998655555532 12  34455555 4556555566665443224678888889862 1  


Q ss_pred             -----CCCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCC-cchhhHHHH-----HhhhccCC
Q 019957          232 -----PFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSS-TSLTGRVLR-----ERILQNYN  298 (333)
Q Consensus       232 -----p~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~-~~~~~~~~~-----~~~~~~~~  298 (333)
                           .|....--++++-+++.+++..  .++|+.+.+...||+.+++.....-... .....+...     ........
T Consensus       148 ~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (260)
T TIGR00027       148 ALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVF  227 (260)
T ss_pred             HHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhccccccccc
Confidence                 1222233467778888888654  4788888888889998888654431110 000011111     11123445


Q ss_pred             CCCHHHHHHHHHhCCCcEEEE
Q 019957          299 YLTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       299 ~~t~~~l~~ll~~aGf~~v~~  319 (333)
                      .++.+++..+|++.||+....
T Consensus       228 ~~~~~~~~~~l~~~Gw~~~~~  248 (260)
T TIGR00027       228 GIDRADVAEWLAERGWRASEH  248 (260)
T ss_pred             CCChhhHHHHHHHCCCeeecC
Confidence            678999999999999998763

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.34  E-value=0.042  Score=53.44  Aligned_cols=101  Identities=22%  Similarity=0.219  Sum_probs=69.9

Q ss_pred             ccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-----------C
Q 019957          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-----------L  231 (333)
Q Consensus       164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-----------l  231 (333)
                      ..++.+|+=+|+|. |..+...++.. +.+|+++|.++..++.+++.          +.+++..+..+           +
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl----------GA~~v~i~~~e~~~~~~gya~~~  230 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM----------GAEFLELDFEEEGGSGDGYAKVM  230 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEEeccccccccccchhhhc
Confidence            34688999999998 77777777664 34899999999999888872          22322211111           0


Q ss_pred             --C--------CCC--CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          232 --P--------FAS--GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       232 --p--------~~~--~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                        .        +.+  +.+|+|+.......-+.|..+.+++.+.+||||+++....
T Consensus       231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             chhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence              0        011  3699999877655545565556999999999999887654

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.33  E-value=0.081  Score=49.26  Aligned_cols=99  Identities=23%  Similarity=0.192  Sum_probs=69.4

Q ss_pred             cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-C-----CCCC-C
Q 019957          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L-----PFAS-G  236 (333)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-l-----p~~~-~  236 (333)
                      .++.+|+=+|||. |.++..+++.....+++.+|.++..++.|++...         ...+.....+ .     .... .
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g---------~~~~~~~~~~~~~~~~~~~t~g~  237 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG---------ADVVVNPSEDDAGAEILELTGGR  237 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC---------CeEeecCccccHHHHHHHHhCCC
Confidence            3444899999998 8888888887667799999999999999988432         2222222111 0     1112 3


Q ss_pred             CcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      .+|+++-...      ....+..+.+++++||.+++.-....
T Consensus       238 g~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~  273 (350)
T COG1063         238 GADVVIEAVG------SPPALDQALEALRPGGTVVVVGVYGG  273 (350)
T ss_pred             CCCEEEECCC------CHHHHHHHHHHhcCCCEEEEEeccCC
Confidence            6999985433      23468999999999999988776544

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=96.20  E-value=0.02  Score=50.35  Aligned_cols=99  Identities=18%  Similarity=0.220  Sum_probs=69.4

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CC-CCCCCcceEE
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-FASGFVDAVH  242 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-~~~~~fD~V~  242 (333)
                      ..+..|+-+| -.-..+.+++-.+-..++..+|+++..+....+..++.|   ..++..+.-|+.+ +| -..++||+++
T Consensus       151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g---~~~ie~~~~Dlr~plpe~~~~kFDvfi  226 (354)
T COG1568         151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG---YNNIEAFVFDLRNPLPEDLKRKFDVFI  226 (354)
T ss_pred             cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC---ccchhheeehhcccChHHHHhhCCeee
Confidence            4577899998 444555555555545689999999999999999888887   6678888889865 34 1146899987


Q ss_pred             eccccccCCChHHHHHHHH-------HhccCC---cEEEEEEe
Q 019957          243 AGAALHCWPSPSNAVAEIS-------RILRSG---GVFVGTTF  275 (333)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~-------r~Lkpg---G~l~i~~~  275 (333)
                              .||...+..++       ..||.-   |++.++..
T Consensus       227 --------TDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~r  261 (354)
T COG1568         227 --------TDPPETIKALKLFLGRGIATLKGEGCAGYFGITRR  261 (354)
T ss_pred             --------cCchhhHHHHHHHHhccHHHhcCCCccceEeeeec
Confidence                    46655444443       455544   77777653

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.12  E-value=0.085  Score=47.63  Aligned_cols=103  Identities=18%  Similarity=0.149  Sum_probs=71.2

Q ss_pred             cccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc--CCCC------CC
Q 019957          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD--VCRL------PF  233 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d--~~~l------p~  233 (333)
                      ..+.+.+||-+|+|. |..+...++.....+|+.+|+++..++.|++ +...      .+......  ...+      ..
T Consensus       166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~------~~~~~~~~~~~~~~~~~v~~~~  238 (354)
T KOG0024|consen  166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGAT------VTDPSSHKSSPQELAELVEKAL  238 (354)
T ss_pred             CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCe------EEeeccccccHHHHHHHHHhhc
Confidence            346788999999997 8888777777657799999999999999998 3221      11111110  0110      12


Q ss_pred             CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      ....+|+.+....+      ...++.....++.||.+++......
T Consensus       239 g~~~~d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~  277 (354)
T KOG0024|consen  239 GKKQPDVTFDCSGA------EVTIRAAIKATRSGGTVVLVGMGAE  277 (354)
T ss_pred             cccCCCeEEEccCc------hHHHHHHHHHhccCCEEEEeccCCC
Confidence            23458888865443      3457778889999999888886655

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.09  E-value=0.028  Score=48.81  Aligned_cols=91  Identities=20%  Similarity=0.139  Sum_probs=52.2

Q ss_pred             HHHHhhcccCC--CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH---hcCc---CCCCCeEEEEccC
Q 019957          157 MAQEYFKSAQG--GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK---QDNT---ILTSNLALVRADV  228 (333)
Q Consensus       157 ~~~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~~---~~~~~i~~~~~d~  228 (333)
                      .+.+.....++  .+|||.-+|-|.-+..++..|.  +|+++|-|+-+....+.-+.   ....   +...+++++.+|.
T Consensus        64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~  141 (234)
T PF04445_consen   64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA  141 (234)
T ss_dssp             HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred             HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence            44455544443  4899999999999999888775  99999999976555554332   2110   0024789999998


Q ss_pred             CC-CCCCCCCcceEEecccccc
Q 019957          229 CR-LPFASGFVDAVHAGAALHC  249 (333)
Q Consensus       229 ~~-lp~~~~~fD~V~~~~vl~h  249 (333)
                      .+ +..++.+||+|.+.-.+.|
T Consensus       142 ~~~L~~~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  142 LEYLRQPDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             CCHCCCHSS--SEEEE--S---
T ss_pred             HHHHhhcCCCCCEEEECCCCCC
Confidence            66 4555789999998766665

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=96.07  E-value=0.026  Score=48.63  Aligned_cols=105  Identities=21%  Similarity=0.288  Sum_probs=70.2

Q ss_pred             hcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---CCCCC
Q 019957          162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGF  237 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~  237 (333)
                      +..+++.+||-+|+++|.....+... +|..-|+++|+|...=+......+.     .+|+--+.-|+....   ..-.-
T Consensus       152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-----RtNiiPIiEDArhP~KYRmlVgm  226 (317)
T KOG1596|consen  152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-----RTNIIPIIEDARHPAKYRMLVGM  226 (317)
T ss_pred             eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-----cCCceeeeccCCCchheeeeeee
Confidence            34678999999999999999888886 7778899999997533332222222     557766777775521   11235


Q ss_pred             cceEEeccccccCCChH---HHHHHHHHhccCCcEEEEEEec
Q 019957          238 VDAVHAGAALHCWPSPS---NAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       238 fD~V~~~~vl~h~~d~~---~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      .|+|++.     +..|.   .+.-++...||+||.+++..-.
T Consensus       227 VDvIFaD-----vaqpdq~RivaLNA~~FLk~gGhfvisika  263 (317)
T KOG1596|consen  227 VDVIFAD-----VAQPDQARIVALNAQYFLKNGGHFVISIKA  263 (317)
T ss_pred             EEEEecc-----CCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence            6777653     33333   2334566789999999987643

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=95.99  E-value=0.11  Score=49.10  Aligned_cols=105  Identities=18%  Similarity=0.215  Sum_probs=69.3

Q ss_pred             hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-----C-CC-
Q 019957          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-----L-PF-  233 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-----l-p~-  233 (333)
                      ....++.+||.+|+|. |..+..+++.....+++++|.++..++.+++..         ...++...-.+     + .+ 
T Consensus       180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---------~~~vi~~~~~~~~~~~l~~~~  250 (386)
T cd08283         180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---------GAETINFEEVDDVVEALRELT  250 (386)
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---------CcEEEcCCcchHHHHHHHHHc
Confidence            3445678999999988 888888888753346999999999888887631         12222111110     1 11 


Q ss_pred             CCCCcceEEeccc-----------cccC----CChHHHHHHHHHhccCCcEEEEEEe
Q 019957          234 ASGFVDAVHAGAA-----------LHCW----PSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       234 ~~~~fD~V~~~~v-----------l~h~----~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ....+|+|+-.-.           +.|.    .++...+.++.+.|+++|.+++...
T Consensus       251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~  307 (386)
T cd08283         251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV  307 (386)
T ss_pred             CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence            1236898876421           1222    4556789999999999999988753

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.98  E-value=0.0086  Score=44.95  Aligned_cols=32  Identities=25%  Similarity=0.362  Sum_probs=27.8

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCC
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS  199 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s  199 (333)
                      +....+|||||+|.+..-|...|.  .-.|+|..
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGY--PGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCC--Cccccccc
Confidence            455799999999999999999887  88999974

; GO: 0008168 methyltransferase activity

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=95.93  E-value=0.035  Score=52.08  Aligned_cols=104  Identities=16%  Similarity=0.170  Sum_probs=75.0

Q ss_pred             CCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCC-CeEEEEccCCCCC-CCCCCcceEEe
Q 019957          167 GGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTS-NLALVRADVCRLP-FASGFVDAVHA  243 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~-~i~~~~~d~~~lp-~~~~~fD~V~~  243 (333)
                      +.+|||.=+|+|-=+...+.. ....+|+.-|+|+.+++..+++++.+++  .. .+.+...|+..+- .....||+|=.
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~--~~~~~~v~~~DAn~ll~~~~~~fD~IDl  127 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL--EDERIEVSNMDANVLLYSRQERFDVIDL  127 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT---SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc--cCceEEEehhhHHHHhhhccccCCEEEe
Confidence            458999999999776666665 3345899999999999999999999886  34 5888888886642 24678999964


Q ss_pred             ccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       244 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                          .-+..|..+|+.+.+.++.||.|.++.-.
T Consensus       128 ----DPfGSp~pfldsA~~~v~~gGll~vTaTD  156 (377)
T PF02005_consen  128 ----DPFGSPAPFLDSALQAVKDGGLLCVTATD  156 (377)
T ss_dssp             ------SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred             ----CCCCCccHhHHHHHHHhhcCCEEEEeccc
Confidence                44456789999999999999999987643

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=95.90  E-value=0.0045  Score=37.01  Aligned_cols=35  Identities=17%  Similarity=0.493  Sum_probs=22.9

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      +.+.||.|+......+..   .+ -....++|++|++.|
T Consensus         1 M~i~Cp~C~~~y~i~d~~---ip-~~g~~v~C~~C~~~f   35 (36)
T PF13717_consen    1 MIITCPNCQAKYEIDDEK---IP-PKGRKVRCSKCGHVF   35 (36)
T ss_pred             CEEECCCCCCEEeCCHHH---CC-CCCcEEECCCCCCEe
Confidence            468999999976443220   11 111368999999987

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=95.80  E-value=0.64  Score=40.51  Aligned_cols=110  Identities=19%  Similarity=0.211  Sum_probs=70.5

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CC-CCCCC
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-FASGF  237 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-~~~~~  237 (333)
                      ...+..++|+|+|+..-++.+.+.    +....++.+|+|...++...+.+...-.  .-.+.-+.+|.+. +. .+...
T Consensus        76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~--~l~v~~l~~~~~~~La~~~~~~  153 (321)
T COG4301          76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP--GLEVNALCGDYELALAELPRGG  153 (321)
T ss_pred             hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC--CCeEeehhhhHHHHHhcccCCC
Confidence            345678999999998776666554    3346899999999888765544433211  3345556677643 11 11222


Q ss_pred             cc-eEEeccccccCC-C-hHHHHHHHHHhccCCcEEEEEEe
Q 019957          238 VD-AVHAGAALHCWP-S-PSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       238 fD-~V~~~~vl~h~~-d-~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      -- .++....|..+. + -..+|..++..|+||-.+++-+-
T Consensus       154 ~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD  194 (321)
T COG4301         154 RRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD  194 (321)
T ss_pred             eEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence            22 334455566553 2 25789999999999999988664

>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C

Probab=95.77  E-value=0.0057  Score=35.94  Aligned_cols=30  Identities=33%  Similarity=0.654  Sum_probs=16.3

Q ss_pred             ccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           63 CPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        63 CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      ||.||+++....+.+.+.     ..+.|+.||..+
T Consensus         3 C~~CG~~l~~~ip~gd~r-----~R~vC~~Cg~Ih   32 (34)
T PF14803_consen    3 CPQCGGPLERRIPEGDDR-----ERLVCPACGFIH   32 (34)
T ss_dssp             -TTT--B-EEE--TT-SS------EEEETTTTEEE
T ss_pred             cccccChhhhhcCCCCCc-----cceECCCCCCEE
Confidence            999999987765533322     378899998753

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=95.75  E-value=0.063  Score=54.45  Aligned_cols=126  Identities=16%  Similarity=0.092  Sum_probs=76.1

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhC-------C-----CCeEEEEeCCH---HHHHHHH-----------HHHHhc-----C
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSG-------T-----YSGVVALDFSE---NMLRQCY-----------DFIKQD-----N  214 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~-------~-----~~~v~g~D~s~---~~~~~a~-----------~~~~~~-----~  214 (333)
                      +.-+|||+|-|+|.+.....+..       +     ..+++.+|..+   +.+..+.           +.....     |
T Consensus        57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g  136 (662)
T PRK01747         57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG  136 (662)
T ss_pred             CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence            34689999999998665544322       2     24789999644   3332222           111110     1


Q ss_pred             cC------CCCCeEEEEccCCC-CCCCCCCcceEEeccccccCCCh----HHHHHHHHHhccCCcEEEEEEecccCCCcc
Q 019957          215 TI------LTSNLALVRADVCR-LPFASGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLRYTSSTS  283 (333)
Q Consensus       215 ~~------~~~~i~~~~~d~~~-lp~~~~~fD~V~~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~  283 (333)
                      ..      ..-.+++..+|+.+ ++--...||+++.... .--.+|    ..+++.+.++++|||.+.-.+         
T Consensus       137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~F-sP~~np~~W~~~~~~~l~~~~~~~~~~~t~t---------  206 (662)
T PRK01747        137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGF-APAKNPDMWSPNLFNALARLARPGATLATFT---------  206 (662)
T ss_pred             ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCC-CCccChhhccHHHHHHHHHHhCCCCEEEEee---------
Confidence            00      01145577788754 2322356999997542 111233    588999999999999987544         


Q ss_pred             hhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEE
Q 019957          284 LTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT  318 (333)
Q Consensus       284 ~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~  318 (333)
                                       +...+++-|.++||++.+
T Consensus       207 -----------------~a~~vr~~l~~~GF~v~~  224 (662)
T PRK01747        207 -----------------SAGFVRRGLQEAGFTVRK  224 (662)
T ss_pred             -----------------hHHHHHHHHHHcCCeeee
Confidence                             234677888888887755

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.73  E-value=0.019  Score=49.12  Aligned_cols=95  Identities=23%  Similarity=0.326  Sum_probs=67.3

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCC---------CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTY---------SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----  232 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~---------~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----  232 (333)
                      -.+++|+.+..|.++..|.++...         ..++++|+-+ |.             +.+++.-+++|+....     
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-Ma-------------PI~GV~qlq~DIT~~stae~I  107 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-MA-------------PIEGVIQLQGDITSASTAEAI  107 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-CC-------------ccCceEEeecccCCHhHHHHH
Confidence            358999999999999999886311         1389999844 11             2568888999997742     


Q ss_pred             ---CCCCCcceEEeccc-----cccCCCh------HHHHHHHHHhccCCcEEEEEEe
Q 019957          233 ---FASGFVDAVHAGAA-----LHCWPSP------SNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 ---~~~~~fD~V~~~~v-----l~h~~d~------~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                         |..++.|+|+|.+.     ||.+.+-      ..+|.-...+|||||.|+---+
T Consensus       108 i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif  164 (294)
T KOG1099|consen  108 IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF  164 (294)
T ss_pred             HHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence               66679999999654     3433221      2455666789999999987543

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=95.72  E-value=0.077  Score=44.19  Aligned_cols=112  Identities=13%  Similarity=0.108  Sum_probs=76.6

Q ss_pred             HHhhcccCCCeEEEEcCCcCHHHHHHHH----hCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--
Q 019957          159 QEYFKSAQGGLLVDVSCGSGLFSRKFAK----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (333)
Q Consensus       159 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--  232 (333)
                      .+++-..++..|+|+|.-.|..+...+.    .|...+|+++|++-..+..+...        .+++.++.++-.+..  
T Consensus        62 Qellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--------~p~i~f~egss~dpai~  133 (237)
T COG3510          62 QELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--------VPDILFIEGSSTDPAIA  133 (237)
T ss_pred             HHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--------CCCeEEEeCCCCCHHHH
Confidence            3444445567999999988866555544    35456899999987655444332        578999999987653  


Q ss_pred             -----CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957          233 -----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       233 -----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                           .+++.--+.++...-||...-.+.|+.+.++|..|-++++.+.+..
T Consensus       134 eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~  184 (237)
T COG3510         134 EQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVN  184 (237)
T ss_pred             HHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEeccccc
Confidence                 1223333444555556655566778888899999999999887664

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=95.71  E-value=0.1  Score=50.05  Aligned_cols=106  Identities=9%  Similarity=0.193  Sum_probs=76.5

Q ss_pred             CCeEEEEcCCcCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEE
Q 019957          167 GGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (333)
                      ..+|+-+|+|-|-+.....+.    ....+++++|-+|+++...+.+ ....  +..+++++..|+...+.+..+.|+++
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~--W~~~Vtii~~DMR~w~ap~eq~DI~V  444 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFEC--WDNRVTIISSDMRKWNAPREQADIIV  444 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhh--hcCeeEEEeccccccCCchhhccchH
Confidence            346889999999887655443    2345899999999988777653 2222  36789999999999875568899988


Q ss_pred             eccccccCCCh---HHHHHHHHHhccCCcEEEEEEec
Q 019957          243 AGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       243 ~~~vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      + ..|..+.|-   .+.|.-+.+.|||+|+.+=....
T Consensus       445 S-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYt  480 (649)
T KOG0822|consen  445 S-ELLGSFGDNELSPECLDGAQKFLKPDGISIPSSYT  480 (649)
T ss_pred             H-HhhccccCccCCHHHHHHHHhhcCCCceEccchhh
Confidence            6 223333332   47799999999999877654443

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.67  E-value=0.047  Score=46.84  Aligned_cols=99  Identities=14%  Similarity=0.171  Sum_probs=64.2

Q ss_pred             CCCcHHHHHHHHHhhcc------cCCCeEEEEcCCcCHHHHHH--HHhCCCCeEEEEeCCHHHHHHHHHHHHhc-CcCCC
Q 019957          148 FPGPDEEFKMAQEYFKS------AQGGLLVDVSCGSGLFSRKF--AKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILT  218 (333)
Q Consensus       148 ~~~~~~~~~~~~~~l~~------~~~~~vLDiGcG~G~~~~~l--~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~  218 (333)
                      .|+....+..+.+++..      .++.++||||.|.-..--.+  .+.++  +.+|.|+++..++.|+..+..+ ++  .
T Consensus        54 vPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw--rfvGseid~~sl~sA~~ii~~N~~l--~  129 (292)
T COG3129          54 VPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGW--RFVGSEIDSQSLSSAKAIISANPGL--E  129 (292)
T ss_pred             CCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecc--eeecCccCHHHHHHHHHHHHcCcch--h
Confidence            34555666777777753      24557899998875433222  23344  9999999999999999988776 33  3


Q ss_pred             CCeEEEEccCCC--CC---CCCCCcceEEeccccccC
Q 019957          219 SNLALVRADVCR--LP---FASGFVDAVHAGAALHCW  250 (333)
Q Consensus       219 ~~i~~~~~d~~~--lp---~~~~~fD~V~~~~vl~h~  250 (333)
                      ..|++....-.+  ++   -.++.||+++|+--+|..
T Consensus       130 ~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s  166 (292)
T COG3129         130 RAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDS  166 (292)
T ss_pred             hheeEEeccCccccccccccccceeeeEecCCCcchh
Confidence            345544322211  11   236789999998777643

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=95.54  E-value=0.24  Score=50.14  Aligned_cols=108  Identities=12%  Similarity=0.057  Sum_probs=61.7

Q ss_pred             CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHH-HHHHHhcCcCCCCCeEEEEccC---CCCCCCCCCcceEEe
Q 019957          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQC-YDFIKQDNTILTSNLALVRADV---CRLPFASGFVDAVHA  243 (333)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a-~~~~~~~~~~~~~~i~~~~~d~---~~lp~~~~~fD~V~~  243 (333)
                      ..+--.|.||-.....+.+.+|+..++-+|-+...-..+ +..+....   ...++++.|.=   ..+.|++=.-=.|+.
T Consensus       484 ~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~---~ge~dILiGTQmiaKG~~fp~vtLVgvl~  560 (730)
T COG1198         484 EHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFA---NGEADILIGTQMIAKGHDFPNVTLVGVLD  560 (730)
T ss_pred             CeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHh---CCCCCeeecchhhhcCCCcccceEEEEEe
Confidence            358888999999999999999999999999876543322 22222221   22333333321   122344322333445


Q ss_pred             ccccccCCChH---HHHHHHHHhc----c--CCcEEEEEEeccc
Q 019957          244 GAALHCWPSPS---NAVAEISRIL----R--SGGVFVGTTFLRY  278 (333)
Q Consensus       244 ~~vl~h~~d~~---~~l~~~~r~L----k--pgG~l~i~~~~~~  278 (333)
                      .+..-+.+|..   ++++.+..+.    +  .-|.+++.|.+..
T Consensus       561 aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~  604 (730)
T COG1198         561 ADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPD  604 (730)
T ss_pred             chhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCC
Confidence            55566667763   3444443333    1  4467888887765

>PRK00420 hypothetical protein; Validated

Probab=95.52  E-value=0.0084  Score=45.58  Aligned_cols=32  Identities=28%  Similarity=0.501  Sum_probs=24.8

Q ss_pred             eecccCCCccccccCCCCccccccccCceeeCCCCccccCcC
Q 019957           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD  101 (333)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~  101 (333)
                      .-.||.||.++.....          |...|++||..+....
T Consensus        23 ~~~CP~Cg~pLf~lk~----------g~~~Cp~Cg~~~~v~~   54 (112)
T PRK00420         23 SKHCPVCGLPLFELKD----------GEVVCPVHGKVYIVKS   54 (112)
T ss_pred             cCCCCCCCCcceecCC----------CceECCCCCCeeeecc
Confidence            3579999999976432          6899999999775544

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=95.42  E-value=0.051  Score=48.09  Aligned_cols=46  Identities=11%  Similarity=0.146  Sum_probs=35.3

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHHHHh
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGT--------YSGVVALDFSENMLRQCYDFIKQ  212 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~g~D~s~~~~~~a~~~~~~  212 (333)
                      +.+|+|+|+|+|.++..+.+...        ..+++.+|+|+.+.+.-++++..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            46899999999999988876521        35899999999988888887765

; PDB: 4F3N_A 1ZKD_B.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=95.35  E-value=0.038  Score=51.62  Aligned_cols=61  Identities=15%  Similarity=0.360  Sum_probs=50.9

Q ss_pred             CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ..|||||+|||.++..+.+.+. -.|+++|.-..|.+.|++....+|.  .++|.++.-.-.+.
T Consensus        68 v~vLdigtGTGLLSmMAvraga-D~vtA~EvfkPM~d~arkI~~kng~--SdkI~vInkrStev  128 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGA-DSVTACEVFKPMVDLARKIMHKNGM--SDKINVINKRSTEV  128 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcC-CeEEeehhhchHHHHHHHHHhcCCC--ccceeeecccccee
Confidence            3589999999999999999884 4799999999999999999998885  77888776544443

>TIGR00595 priA primosomal protein N'

Probab=95.34  E-value=0.57  Score=45.88  Aligned_cols=32  Identities=19%  Similarity=0.105  Sum_probs=25.0

Q ss_pred             CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCC
Q 019957          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS  199 (333)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s  199 (333)
                      ..+--.|.|+-.....+.+.+|+..+..+|-+
T Consensus       262 ~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d  293 (505)
T TIGR00595       262 EDLVYKGYGTEQVEEELAKLFPGARIARIDSD  293 (505)
T ss_pred             CeeEeecccHHHHHHHHHhhCCCCcEEEEecc
Confidence            35667788888888888888887788888765

All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=95.33  E-value=0.009  Score=32.81  Aligned_cols=24  Identities=25%  Similarity=0.647  Sum_probs=18.8

Q ss_pred             cccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      .||.|+.....             ..-.|+.||+.|.
T Consensus         2 ~CP~C~~~V~~-------------~~~~Cp~CG~~F~   25 (26)
T PF10571_consen    2 TCPECGAEVPE-------------SAKFCPHCGYDFE   25 (26)
T ss_pred             cCCCCcCCchh-------------hcCcCCCCCCCCc
Confidence            59999987644             2568999999874

Several members are annotated as putative helicases.

>PRK11524 putative methyltransferase; Provisional

Probab=95.33  E-value=0.076  Score=47.92  Aligned_cols=60  Identities=13%  Similarity=0.158  Sum_probs=49.0

Q ss_pred             CcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh
Q 019957          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ  212 (333)
Q Consensus       150 ~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~  212 (333)
                      .+.++++.+..... .++..|||.=+|+|..+.+..+.+-  +++|+|++++..+.|++++..
T Consensus       193 kP~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        193 KPEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR--KFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             ChHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence            34555566555544 4688999999999999999998876  999999999999999998754

>PHA00626 hypothetical protein

Probab=95.23  E-value=0.013  Score=37.88  Aligned_cols=33  Identities=21%  Similarity=0.572  Sum_probs=21.1

Q ss_pred             ecccCCCcc-ccccCCCCccccccccCceeeCCCCcccc
Q 019957           61 FSCPICYEP-LIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        61 l~CP~C~~~-l~~~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      +.||.||+. ......  .   .-.++.+.|+.||..|.
T Consensus         1 m~CP~CGS~~Ivrcg~--c---r~~snrYkCkdCGY~ft   34 (59)
T PHA00626          1 MSCPKCGSGNIAKEKT--M---RGWSDDYVCCDCGYNDS   34 (59)
T ss_pred             CCCCCCCCceeeeece--e---cccCcceEcCCCCCeec
Confidence            469999995 333211  0   01136899999999883

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.22  E-value=0.13  Score=47.48  Aligned_cols=100  Identities=17%  Similarity=0.208  Sum_probs=61.6

Q ss_pred             ccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEE
Q 019957          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (333)
Q Consensus       164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (333)
                      ..++.+||=+|+|. |.++..+++.....+++++|.++..++.+++. ..     ..-+.....++.+.....+.+|+|+
T Consensus       167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga-----~~vi~~~~~~~~~~~~~~g~~D~vi  240 (343)
T PRK09880        167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GA-----DKLVNPQNDDLDHYKAEKGYFDVSF  240 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CC-----cEEecCCcccHHHHhccCCCCCEEE
Confidence            34577899899875 77777777764233699999999988888762 11     0001111111212111123588886


Q ss_pred             eccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      -.-     ..+ ..++.+.+.|++||++++...
T Consensus       241 d~~-----G~~-~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        241 EVS-----GHP-SSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             ECC-----CCH-HHHHHHHHHhhcCCEEEEEcc
Confidence            432     222 457888899999999988754

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=95.20  E-value=0.065  Score=47.69  Aligned_cols=105  Identities=13%  Similarity=0.177  Sum_probs=79.2

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-cCCCCCeEEEEccCCCC--CCCCCCcceEE
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL--PFASGFVDAVH  242 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~l--p~~~~~fD~V~  242 (333)
                      ...++|-||.|.|...+...++-.-.++.-+|++...++..++.+...- ....+++.+..||-..+  ..+.+.||+|+
T Consensus       121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii  200 (337)
T KOG1562|consen  121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII  200 (337)
T ss_pred             CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence            4578999999999999888877434579999999999999988876421 11257888998887543  13467999998


Q ss_pred             eccccccCCCh---------HHHHHHHHHhccCCcEEEEEEe
Q 019957          243 AGAALHCWPSP---------SNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       243 ~~~vl~h~~d~---------~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      .--     .||         +.....+.+.||+||+++...-
T Consensus       201 ~ds-----sdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e  237 (337)
T KOG1562|consen  201 TDS-----SDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE  237 (337)
T ss_pred             Eec-----CCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence            632     233         3567888999999999988763

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=95.19  E-value=0.083  Score=45.45  Aligned_cols=57  Identities=16%  Similarity=0.198  Sum_probs=42.9

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 019957          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD  208 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~  208 (333)
                      +.+.++++.+..... .++..|||.=||+|..+.+..+.+.  +.+|+|+++...+.|++
T Consensus       175 ~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R--~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  175 QKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGR--RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCC--eEEEEeCCHHHHHHhcC
Confidence            445666666666654 4578999999999999999999876  89999999999988864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=95.16  E-value=0.01  Score=35.96  Aligned_cols=36  Identities=22%  Similarity=0.519  Sum_probs=22.6

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      +.+.||.|+.........   .. .....++|++||+.+.
T Consensus         1 M~~~CP~C~~~~~v~~~~---~~-~~~~~v~C~~C~~~~~   36 (38)
T TIGR02098         1 MRIQCPNCKTSFRVVDSQ---LG-ANGGKVRCGKCGHVWY   36 (38)
T ss_pred             CEEECCCCCCEEEeCHHH---cC-CCCCEEECCCCCCEEE
Confidence            458899999966443210   00 0113689999998764

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=95.05  E-value=0.1  Score=50.75  Aligned_cols=97  Identities=20%  Similarity=0.203  Sum_probs=66.9

Q ss_pred             cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-------------
Q 019957          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-------------  230 (333)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-------------  230 (333)
                      .++.++|=+|+|. |..+..+++.. +..|+++|.++..++.+++.          ...++..|..+             
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l----------Ga~~v~v~~~e~g~~~~gYa~~~s  230 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM----------GAEFLELDFKEEGGSGDGYAKVMS  230 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEeccccccccccccceeecC
Confidence            3568999999997 66666666553 34799999999988877752          12232222211             


Q ss_pred             ----------CCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEE
Q 019957          231 ----------LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVG  272 (333)
Q Consensus       231 ----------lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i  272 (333)
                                ++-.-..+|+|+....+.--+.|.-+.+++.+.+|||++++=
T Consensus       231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD  282 (511)
T TIGR00561       231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD  282 (511)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence                      111124699998887777666776778899999999999764

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK09678 DNA-binding transcriptional regulator; Provisional

Probab=95.02  E-value=0.017  Score=40.27  Aligned_cols=49  Identities=16%  Similarity=0.419  Sum_probs=33.1

Q ss_pred             eecccCCCccccccCCCCccccccccCceeeC--CCCccccCcCCceeeecc
Q 019957           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCR--KCDKTYSSKDNYLDLTVI  109 (333)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~g~~~~~~~  109 (333)
                      ++.||.||+......... ..+.....+..|.  +||+.|...+.+...+..
T Consensus         1 mm~CP~Cg~~a~irtSr~-~s~~~~~~Y~qC~N~eCg~tF~t~es~s~tis~   51 (72)
T PRK09678          1 MFHCPLCQHAAHARTSRY-ITDTTKERYHQCQNVNCSATFITYESVQRYIVK   51 (72)
T ss_pred             CccCCCCCCccEEEEChh-cChhhheeeeecCCCCCCCEEEEEEEEEEEEcC
Confidence            478999999763322212 2223555688999  999999877777666654

>PRK05580 primosome assembly protein PriA; Validated

Probab=94.99  E-value=0.54  Score=47.85  Aligned_cols=103  Identities=14%  Similarity=0.101  Sum_probs=53.9

Q ss_pred             CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCH----HHHHHHHHHHHhcCcCCCCCeEEEEc-cCC--CCCCCCCCcce
Q 019957          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE----NMLRQCYDFIKQDNTILTSNLALVRA-DVC--RLPFASGFVDA  240 (333)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~----~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~--~lp~~~~~fD~  240 (333)
                      ..+-..|.|+-.....+.+.+|+..+.-+|-+.    ...+..-+.+..      ..+.++.+ ++.  .+.++  .+++
T Consensus       430 ~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~------g~~~ILVgT~~iakG~d~p--~v~l  501 (679)
T PRK05580        430 TDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFAR------GEADILIGTQMLAKGHDFP--NVTL  501 (679)
T ss_pred             CeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhc------CCCCEEEEChhhccCCCCC--CcCE
Confidence            356777778878888888887777777777543    223333333332      12223222 221  11222  3455


Q ss_pred             EE--eccccccCCCh---HHHHHHHHHhc------cCCcEEEEEEeccc
Q 019957          241 VH--AGAALHCWPSP---SNAVAEISRIL------RSGGVFVGTTFLRY  278 (333)
Q Consensus       241 V~--~~~vl~h~~d~---~~~l~~~~r~L------kpgG~l~i~~~~~~  278 (333)
                      |.  .....-+.+|.   .++++.+..+.      ..+|.+++.+....
T Consensus       502 V~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~  550 (679)
T PRK05580        502 VGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE  550 (679)
T ss_pred             EEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence            53  23333444443   34444444332      45799999887654

>PRK13699 putative methylase; Provisional

Probab=94.99  E-value=0.16  Score=44.23  Aligned_cols=61  Identities=18%  Similarity=0.232  Sum_probs=49.3

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh
Q 019957          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ  212 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~  212 (333)
                      ..+.++.+.+..... .++..|||.=||+|..+.+..+.+.  +++|+|+++...+.+.+++..
T Consensus       147 ~kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        147 EKPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             CCcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHH
Confidence            345566666655444 3678999999999999999888876  899999999999999988765

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=94.95  E-value=0.038  Score=36.19  Aligned_cols=32  Identities=22%  Similarity=0.565  Sum_probs=23.5

Q ss_pred             eecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      .+.||.|+..+......      . ...+.|+.||..+-
T Consensus         2 ~~~CP~CG~~iev~~~~------~-GeiV~Cp~CGaele   33 (54)
T TIGR01206         2 QFECPDCGAEIELENPE------L-GELVICDECGAELE   33 (54)
T ss_pred             ccCCCCCCCEEecCCCc------c-CCEEeCCCCCCEEE
Confidence            56899999988654321      1 24789999999883

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>KOG1088 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.94  E-value=0.012  Score=44.32  Aligned_cols=28  Identities=7%  Similarity=0.312  Sum_probs=24.4

Q ss_pred             ccccCceeeCCCCccccCcCCceeeecc
Q 019957           82 AIYRSGFKCRKCDKTYSSKDNYLDLTVI  109 (333)
Q Consensus        82 ~~~~~~~~C~~C~~~~~~~~g~~~~~~~  109 (333)
                      .+..|.+.|++||+.|++.+|++|.+..
T Consensus        93 ~v~EG~l~CpetG~vfpI~~GIPNMLL~  120 (124)
T KOG1088|consen   93 DVIEGELVCPETGRVFPISDGIPNMLLS  120 (124)
T ss_pred             hhccceEecCCCCcEeecccCCcccccC
Confidence            3556899999999999999999998864

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=94.90  E-value=0.069  Score=45.37  Aligned_cols=119  Identities=20%  Similarity=0.128  Sum_probs=68.5

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhcC---c---------------
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDN---T---------------  215 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~---~---------------  215 (333)
                      ++-..++....+-++-|-.||.|+++-.+.-....  ..++|.|+++++++.|++++.-..   +               
T Consensus        41 qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~  120 (246)
T PF11599_consen   41 QRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYG  120 (246)
T ss_dssp             HHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcC
Confidence            34444444445678999999999998777655322  479999999999999999873211   0               


Q ss_pred             --------------------C-CCCCeEEEEccCCCCC-----CCCCCcceEEeccccccCCCh---------HHHHHHH
Q 019957          216 --------------------I-LTSNLALVRADVCRLP-----FASGFVDAVHAGAALHCWPSP---------SNAVAEI  260 (333)
Q Consensus       216 --------------------~-~~~~i~~~~~d~~~lp-----~~~~~fD~V~~~~vl~h~~d~---------~~~l~~~  260 (333)
                                          . ........++|+.+..     -.....|+|+..--..++.++         ..+|..+
T Consensus       121 kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l  200 (246)
T PF11599_consen  121 KPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSL  200 (246)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHH
Confidence                                0 1233667788887621     112346999875444333322         4789999


Q ss_pred             HHhccCCcEEEEEE
Q 019957          261 SRILRSGGVFVGTT  274 (333)
Q Consensus       261 ~r~LkpgG~l~i~~  274 (333)
                      ..+|..++++.+++
T Consensus       201 ~~vLp~~sVV~v~~  214 (246)
T PF11599_consen  201 APVLPERSVVAVSD  214 (246)
T ss_dssp             HCCS-TT-EEEEEE
T ss_pred             HhhCCCCcEEEEec
Confidence            99996666666644

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.88  E-value=0.017  Score=36.01  Aligned_cols=29  Identities=24%  Similarity=0.476  Sum_probs=19.6

Q ss_pred             ecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      +.||.|++.....+        ...+.+.|++||.+-
T Consensus         1 m~Cp~Cg~~~~~~D--------~~~g~~vC~~CG~Vl   29 (43)
T PF08271_consen    1 MKCPNCGSKEIVFD--------PERGELVCPNCGLVL   29 (43)
T ss_dssp             ESBTTTSSSEEEEE--------TTTTEEEETTT-BBE
T ss_pred             CCCcCCcCCceEEc--------CCCCeEECCCCCCEe
Confidence            57999999753222        123688999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.88  E-value=0.22  Score=45.80  Aligned_cols=102  Identities=17%  Similarity=0.235  Sum_probs=79.0

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC-CCCcceEEecc
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGA  245 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~  245 (333)
                      ..+|||.=+|+|-=+..++...+..+++.-|+|+.+.+.++++++.+.   ..+...+..|+..+-.. ...||+|=   
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~---~~~~~v~n~DAN~lm~~~~~~fd~ID---  126 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS---GEDAEVINKDANALLHELHRAFDVID---  126 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC---cccceeecchHHHHHHhcCCCccEEe---
Confidence            568999999999888777777655589999999999999999998873   33555666777554322 36788874   


Q ss_pred             ccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                       |.-+..|..+++.+.+.++.||.+-++--
T Consensus       127 -iDPFGSPaPFlDaA~~s~~~~G~l~vTAT  155 (380)
T COG1867         127 -IDPFGSPAPFLDAALRSVRRGGLLCVTAT  155 (380)
T ss_pred             -cCCCCCCchHHHHHHHHhhcCCEEEEEec
Confidence             34445678899999999999999988653

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=94.83  E-value=0.54  Score=38.77  Aligned_cols=126  Identities=17%  Similarity=0.119  Sum_probs=76.5

Q ss_pred             EEcCCcCHHHHHHHHhCC-CCeEEEEeCCH--HHHHHHH---HHHHhcCcCCCCCeE-EEEccCCCCC----CCCCCcce
Q 019957          172 DVSCGSGLFSRKFAKSGT-YSGVVALDFSE--NMLRQCY---DFIKQDNTILTSNLA-LVRADVCRLP----FASGFVDA  240 (333)
Q Consensus       172 DiGcG~G~~~~~l~~~~~-~~~v~g~D~s~--~~~~~a~---~~~~~~~~~~~~~i~-~~~~d~~~lp----~~~~~fD~  240 (333)
                      =||=|.=.|+..|++... ...+++.-.+.  ...+...   +++....   ..++. ....|+..+.    ...+.||.
T Consensus         2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~---~~g~~V~~~VDat~l~~~~~~~~~~FDr   78 (166)
T PF10354_consen    2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR---ELGVTVLHGVDATKLHKHFRLKNQRFDR   78 (166)
T ss_pred             eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh---hcCCccccCCCCCcccccccccCCcCCE
Confidence            356666677778887754 44555554433  2222111   2222210   12222 3345666653    35689999


Q ss_pred             EEeccccccCC------C---------hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHH
Q 019957          241 VHAGAALHCWP------S---------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEI  305 (333)
Q Consensus       241 V~~~~vl~h~~------d---------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l  305 (333)
                      |+.++  .|+.      +         ...+++.+..+|+++|.+.++-....+                    ++..++
T Consensus        79 IiFNF--PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p--------------------y~~W~i  136 (166)
T PF10354_consen   79 IIFNF--PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP--------------------YDSWNI  136 (166)
T ss_pred             EEEeC--CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC--------------------CccccH
Confidence            99864  3443      0         135788899999999999997754431                    355688


Q ss_pred             HHHHHhCCCcEEEEEEe
Q 019957          306 EDLCTSCGLTNYTSKVQ  322 (333)
Q Consensus       306 ~~ll~~aGf~~v~~~~~  322 (333)
                      ..+.+++||..++....
T Consensus       137 ~~lA~~~gl~l~~~~~F  153 (166)
T PF10354_consen  137 EELAAEAGLVLVRKVPF  153 (166)
T ss_pred             HHHHHhcCCEEEEEecC
Confidence            89999999999886543

>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues

Probab=94.75  E-value=0.017  Score=32.84  Aligned_cols=27  Identities=19%  Similarity=0.578  Sum_probs=14.5

Q ss_pred             ecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      -.||.|++.....+.          ..+.|+.|++.+
T Consensus         3 p~Cp~C~se~~y~D~----------~~~vCp~C~~ew   29 (30)
T PF08274_consen    3 PKCPLCGSEYTYEDG----------ELLVCPECGHEW   29 (30)
T ss_dssp             ---TTT-----EE-S----------SSEEETTTTEEE
T ss_pred             CCCCCCCCcceeccC----------CEEeCCcccccC
Confidence            379999998766544          489999999864

The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=94.75  E-value=0.019  Score=40.98  Aligned_cols=32  Identities=25%  Similarity=0.676  Sum_probs=24.0

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCccccC
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~   99 (333)
                      ....||.|+..-....         -.+++.|..||..|.-
T Consensus        34 ~~~~Cp~C~~~~VkR~---------a~GIW~C~kCg~~fAG   65 (89)
T COG1997          34 AKHVCPFCGRTTVKRI---------ATGIWKCRKCGAKFAG   65 (89)
T ss_pred             cCCcCCCCCCcceeee---------ccCeEEcCCCCCeecc
Confidence            4568999999844333         2489999999998843

>PHA01634 hypothetical protein

Probab=94.73  E-value=0.096  Score=40.64  Aligned_cols=47  Identities=17%  Similarity=0.053  Sum_probs=41.3

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD  213 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~  213 (333)
                      .+.+|+|||++.|..+.+++-+| ...|+++++++...+..++..+.+
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een~k~n   74 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEVCAYF   74 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHHhhhh
Confidence            57799999999999999999887 568999999999999998876654

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=94.57  E-value=0.042  Score=52.19  Aligned_cols=118  Identities=18%  Similarity=0.137  Sum_probs=82.4

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-------CCCCCCcc
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-------PFASGFVD  239 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-------p~~~~~fD  239 (333)
                      +..+|-+|-|.|.+...+....+...++++++++.+++.|.+++....   ..+..+...|....       .-.+..||
T Consensus       296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q---~~r~~V~i~dGl~~~~~~~k~~~~~~~~d  372 (482)
T KOG2352|consen  296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ---SDRNKVHIADGLDFLQRTAKSQQEDICPD  372 (482)
T ss_pred             cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh---hhhhhhhHhhchHHHHHHhhccccccCCc
Confidence            557899999999999999998888899999999999999999765422   12233333333221       12456899


Q ss_pred             eEEe----ccccccCCCh------HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHH
Q 019957          240 AVHA----GAALHCWPSP------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV  288 (333)
Q Consensus       240 ~V~~----~~vl~h~~d~------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~  288 (333)
                      +++.    .. .|-+.-|      ..+|..++.+|.|.|.+++....+.....+-+...
T Consensus       373 vl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~  430 (482)
T KOG2352|consen  373 VLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMN  430 (482)
T ss_pred             EEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHh
Confidence            9885    22 3333333      36788899999999999998877765544443333

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=94.50  E-value=0.2  Score=38.97  Aligned_cols=118  Identities=19%  Similarity=0.199  Sum_probs=70.4

Q ss_pred             CcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-----C-CCCCCcceEEecccccc
Q 019957          176 GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P-FASGFVDAVHAGAALHC  249 (333)
Q Consensus       176 G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p-~~~~~fD~V~~~~vl~h  249 (333)
                      |.|.++..+++... .+++++|.++.-++.+++.         .--.++..+-.++     . .....+|+|+-.-.   
T Consensus         1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~---------Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g---   67 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL---------GADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG---   67 (130)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT---------TESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS---
T ss_pred             ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh---------cccccccccccccccccccccccccceEEEEecC---
Confidence            45778888888753 7999999999998888762         1122222222211     1 22347999875432   


Q ss_pred             CCChHHHHHHHHHhccCCcEEEEEEecccCCCcchh-hHHHHHh-hhccCCCCCHHHHHHHHH
Q 019957          250 WPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT-GRVLRER-ILQNYNYLTEEEIEDLCT  310 (333)
Q Consensus       250 ~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~t~~~l~~ll~  310 (333)
                        . ...++....+|+++|.+++...... ...++- ...+... ........+.+++.+.++
T Consensus        68 --~-~~~~~~~~~~l~~~G~~v~vg~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~  126 (130)
T PF00107_consen   68 --S-GDTLQEAIKLLRPGGRIVVVGVYGG-DPISFNLMNLMFKEITIRGSWGGSPEDFQEALQ  126 (130)
T ss_dssp             --S-HHHHHHHHHHEEEEEEEEEESSTST-SEEEEEHHHHHHTTEEEEEESSGGHHHHHHHHH
T ss_pred             --c-HHHHHHHHHHhccCCEEEEEEccCC-CCCCCCHHHHHhCCcEEEEEccCCHHHHHHHHH
Confidence              2 4578999999999999999876651 122221 2222221 113334445677776664

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=94.45  E-value=0.13  Score=46.15  Aligned_cols=125  Identities=18%  Similarity=0.178  Sum_probs=77.1

Q ss_pred             eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC--CCCcceEEeccc
Q 019957          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA--SGFVDAVHAGAA  246 (333)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~--~~~fD~V~~~~v  246 (333)
                      +++|+-||.|.+...+...| ...+.++|+++.+++..+.+..        .. ++.+|+.++...  ...+|+++...-
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~--------~~-~~~~Di~~~~~~~~~~~~D~l~~gpP   71 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFP--------NK-LIEGDITKIDEKDFIPDIDLLTGGFP   71 (275)
T ss_pred             cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCC--------CC-CccCccccCchhhcCCCCCEEEeCCC
Confidence            68999999999999998887 3468999999999988877532        22 566787776432  357999997543


Q ss_pred             cccC---------CChH-HHHHHHHHh---ccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCC
Q 019957          247 LHCW---------PSPS-NAVAEISRI---LRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCG  313 (333)
Q Consensus       247 l~h~---------~d~~-~~l~~~~r~---LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aG  313 (333)
                      ...+         .|+. .++.++.++   ++|.  +++.+....     + ..        ....-..+.+...|++.|
T Consensus        72 Cq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g-----~-~~--------~~~~~~~~~i~~~l~~~G  135 (275)
T cd00315          72 CQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKG-----L-LT--------HDNGNTLKVILNTLEELG  135 (275)
T ss_pred             ChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcc-----h-hc--------cCchHHHHHHHHHHHhCC
Confidence            3221         2333 233344443   3454  444443221     0 00        001123467888889999


Q ss_pred             CcEEEE
Q 019957          314 LTNYTS  319 (333)
Q Consensus       314 f~~v~~  319 (333)
                      +.+...
T Consensus       136 Y~~~~~  141 (275)
T cd00315         136 YNVYWK  141 (275)
T ss_pred             cEEEEE
Confidence            986543

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PRK14873 primosome assembly protein PriA; Provisional

Probab=94.40  E-value=0.52  Score=47.66  Aligned_cols=96  Identities=18%  Similarity=0.083  Sum_probs=56.7

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc-
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA-  245 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~-  245 (333)
                      +..+.-.|-|+-.....+.+.+|+..|.-+|-+. .++.    +.       ....++.+.-...|...+.+.+|.... 
T Consensus       430 s~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~-~l~~----~~-------~~~~IlVGTqgaepm~~g~~~lV~ilda  497 (665)
T PRK14873        430 SDRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQ-VVDT----VD-------AGPALVVATPGAEPRVEGGYGAALLLDA  497 (665)
T ss_pred             CCcceeeeccHHHHHHHHHHHCCCCCEEEEChHH-HHHh----hc-------cCCCEEEECCCCcccccCCceEEEEEcc
Confidence            3457888999999999999999988899888542 2221    11       134455554322232235677765433 


Q ss_pred             -ccccCCCh---HHHHHHHHHhc------cCCcEEEEEE
Q 019957          246 -ALHCWPSP---SNAVAEISRIL------RSGGVFVGTT  274 (333)
Q Consensus       246 -vl~h~~d~---~~~l~~~~r~L------kpgG~l~i~~  274 (333)
                       .+-+.+|.   .++++.+.++.      +++|.+++.+
T Consensus       498 D~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~  536 (665)
T PRK14873        498 WALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA  536 (665)
T ss_pred             hhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe
Confidence             23344444   34555544443      3478888875

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=94.40  E-value=0.75  Score=42.50  Aligned_cols=95  Identities=15%  Similarity=0.118  Sum_probs=59.0

Q ss_pred             ccCCCeEEEEcCCc-CHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceE
Q 019957          164 SAQGGLLVDVSCGS-GLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (333)
Q Consensus       164 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (333)
                      ..++.+||=+|+|. |.++..++++ ....+++++|.++.-++.+++    .+     .. ....+   +. .+..+|+|
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~-----~~-~~~~~---~~-~~~g~d~v  226 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----AD-----ET-YLIDD---IP-EDLAVDHA  226 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cC-----ce-eehhh---hh-hccCCcEE
Confidence            35678999999876 6666666654 324589999999888777754    11     11 11111   11 11248888


Q ss_pred             EeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      +-.-.  . ......+....+.|++||++++.-.
T Consensus       227 iD~~G--~-~~~~~~~~~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         227 FECVG--G-RGSQSAINQIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             EECCC--C-CccHHHHHHHHHhCcCCcEEEEEee
Confidence            74321  0 0023468889999999999987654

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=94.31  E-value=0.041  Score=34.87  Aligned_cols=30  Identities=17%  Similarity=0.438  Sum_probs=22.7

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      ..+.||.||..+......         ..++|+.||...
T Consensus         2 ~~y~C~~CG~~~~~~~~~---------~~~~Cp~CG~~~   31 (46)
T PRK00398          2 AEYKCARCGREVELDEYG---------TGVRCPYCGYRI   31 (46)
T ss_pred             CEEECCCCCCEEEECCCC---------CceECCCCCCeE
Confidence            568999999987654331         268999999865

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=94.27  E-value=0.17  Score=45.44  Aligned_cols=101  Identities=20%  Similarity=0.192  Sum_probs=75.8

Q ss_pred             CCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      ++.+|.-||.|. |..+..++--. ...|+.+|+|.+.+++....+       ..++..+.....++.-.-.+.|+|+..
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f-------~~rv~~~~st~~~iee~v~~aDlvIga  238 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLF-------GGRVHTLYSTPSNIEEAVKKADLVIGA  238 (371)
T ss_pred             CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhh-------CceeEEEEcCHHHHHHHhhhccEEEEE
Confidence            345788888886 77776666543 569999999999888877754       335677766665554334578999987


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      -.+---..|.-+.+++.+.||||++++=.-
T Consensus       239 VLIpgakaPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         239 VLIPGAKAPKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             EEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence            777777889989999999999999987543

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=94.25  E-value=0.63  Score=42.35  Aligned_cols=88  Identities=15%  Similarity=0.124  Sum_probs=56.7

Q ss_pred             CCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      ++.++|=+|+|. |.++..+++......++++|.++..++.+...            .++  |..+.  ....+|+|+-.
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~------------~~i--~~~~~--~~~g~Dvvid~  207 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY------------EVL--DPEKD--PRRDYRAIYDA  207 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc------------ccc--Chhhc--cCCCCCEEEEC
Confidence            466888889876 88888887765333577889888776655431            011  11110  13468988754


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      -.     . ...+..+.+.|+++|++++.-.
T Consensus       208 ~G-----~-~~~~~~~~~~l~~~G~iv~~G~  232 (308)
T TIGR01202       208 SG-----D-PSLIDTLVRRLAKGGEIVLAGF  232 (308)
T ss_pred             CC-----C-HHHHHHHHHhhhcCcEEEEEee
Confidence            22     2 2357888899999999987654

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.20  E-value=1.3  Score=38.74  Aligned_cols=96  Identities=22%  Similarity=0.281  Sum_probs=60.2

Q ss_pred             cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-----CCCCCCc
Q 019957          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASGFV  238 (333)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~~f  238 (333)
                      .++.+||..|+|. |..+..+++.. +.++++++.++...+.+++.    +     ...++...-...     ....+.+
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~----g-----~~~~~~~~~~~~~~~~~~~~~~~~  202 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKEL----G-----ADHVIDYKEEDLEEELRLTGGGGA  202 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHh----C-----CceeccCCcCCHHHHHHHhcCCCC
Confidence            5678999999986 66666666654 35899999998877776542    1     011111110010     0123569


Q ss_pred             ceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      |+|+....     . ...+..+.+.|+++|.++.....
T Consensus       203 d~vi~~~~-----~-~~~~~~~~~~l~~~G~~v~~~~~  234 (271)
T cd05188         203 DVVIDAVG-----G-PETLAQALRLLRPGGRIVVVGGT  234 (271)
T ss_pred             CEEEECCC-----C-HHHHHHHHHhcccCCEEEEEccC
Confidence            99885432     1 14577788899999999876644

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=94.11  E-value=0.071  Score=41.70  Aligned_cols=87  Identities=18%  Similarity=0.214  Sum_probs=54.9

Q ss_pred             CeEEEEccCCC-CCCCCCCcceEEeccccccCCCh----HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhh
Q 019957          220 NLALVRADVCR-LPFASGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERIL  294 (333)
Q Consensus       220 ~i~~~~~d~~~-lp~~~~~fD~V~~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~  294 (333)
                      .+++..+|+.+ ++--+..||+|+... +---.+|    ..+++++.+++++||.+...+                    
T Consensus        32 ~L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys--------------------   90 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATYS--------------------   90 (124)
T ss_dssp             EEEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES---------------------
T ss_pred             EEEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEee--------------------
Confidence            56677788744 332236899998754 2222344    588999999999999876533                    


Q ss_pred             ccCCCCCHHHHHHHHHhCCCcEEEEEEe-CeEEEEEEeCC
Q 019957          295 QNYNYLTEEEIEDLCTSCGLTNYTSKVQ-QSFIMFAAQKP  333 (333)
Q Consensus       295 ~~~~~~t~~~l~~ll~~aGf~~v~~~~~-~~~~~~~a~kp  333 (333)
                            ....+++.|.++||.+.+.... +.--+..|.||
T Consensus        91 ------~a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~~  124 (124)
T PF05430_consen   91 ------SAGAVRRALQQAGFEVEKVPGFGRKREMLRAVKP  124 (124)
T ss_dssp             -------BHHHHHHHHHCTEEEEEEE-STTSSEEEEEEC-
T ss_pred             ------chHHHHHHHHHcCCEEEEcCCCCCcchheEEEcC
Confidence                  1246889999999998775433 23466677765

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=94.08  E-value=0.06  Score=47.73  Aligned_cols=107  Identities=16%  Similarity=0.183  Sum_probs=62.4

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH-------HHH--hcCcCCCCCeEEEEccCCCCCC-C
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD-------FIK--QDNTILTSNLALVRADVCRLPF-A  234 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~-------~~~--~~~~~~~~~i~~~~~d~~~lp~-~  234 (333)
                      ..+++|||+|||.|.-...+...+ ...+...|.+...++.-.-       .+.  ....  ..-......++.+.-+ .
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~--~~~~~i~~s~l~dg~~~~  191 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKEN--HKVDEILNSLLSDGVFNH  191 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhc-cceeeeEecchhheeeecccceecchhhhhhhhhc--ccceeccccccccchhhh
Confidence            357899999999998888777766 3478888887766631110       000  0000  0011111221111111 1


Q ss_pred             CC--CcceEEeccccccCCChHHH-HHHHHHhccCCcEEEEEE
Q 019957          235 SG--FVDAVHAGAALHCWPSPSNA-VAEISRILRSGGVFVGTT  274 (333)
Q Consensus       235 ~~--~fD~V~~~~vl~h~~d~~~~-l~~~~r~LkpgG~l~i~~  274 (333)
                      .+  +||+|.++..+.-......+ +......++++|++++.-
T Consensus       192 t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aA  234 (282)
T KOG2920|consen  192 TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAA  234 (282)
T ss_pred             ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhh
Confidence            23  79999998888776655554 555566778899887754

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=94.00  E-value=0.11  Score=49.21  Aligned_cols=111  Identities=23%  Similarity=0.120  Sum_probs=70.8

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc-cC--CCCCCC-CCCc
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DV--CRLPFA-SGFV  238 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~--~~lp~~-~~~f  238 (333)
                      ..+..++|+|.|.|.-...+....  -.-.++.||.+..|.......++...   ..+-.++.. -+  ..+|.. ...|
T Consensus       199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~---~~g~~~v~~~~~~r~~~pi~~~~~y  275 (491)
T KOG2539|consen  199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGS---HIGEPIVRKLVFHRQRLPIDIKNGY  275 (491)
T ss_pred             cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChh---hcCchhccccchhcccCCCCcccce
Confidence            456689999998775544444332  23479999999999998888765511   011111111 11  123433 3459


Q ss_pred             ceEEeccccccCCChH---HHHHHHH-HhccCCcEEEEEEeccc
Q 019957          239 DAVHAGAALHCWPSPS---NAVAEIS-RILRSGGVFVGTTFLRY  278 (333)
Q Consensus       239 D~V~~~~vl~h~~d~~---~~l~~~~-r~LkpgG~l~i~~~~~~  278 (333)
                      |+|++.+.++++.++.   .+.+++. +..++|+.+++.+....
T Consensus       276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~  319 (491)
T KOG2539|consen  276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT  319 (491)
T ss_pred             eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence            9999999999998764   3334443 45688999999887654

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=93.95  E-value=2.2  Score=40.06  Aligned_cols=118  Identities=18%  Similarity=0.173  Sum_probs=67.2

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHH----HHHHHHh--C-CCCeEEEEeC----CHHHHHHHHHHHHhcCcCCCCCeEEE
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLF----SRKFAKS--G-TYSGVVALDF----SENMLRQCYDFIKQDNTILTSNLALV  224 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~----~~~l~~~--~-~~~~v~g~D~----s~~~~~~a~~~~~~~~~~~~~~i~~~  224 (333)
                      +.|.+.+...+.-.|+|+|.|.|.-    ...|+.+  + |..++||++.    +...++...+++.+..-...-...|.
T Consensus       100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~  179 (374)
T PF03514_consen  100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH  179 (374)
T ss_pred             HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence            5666666666667899999999953    3444443  1 4468999999    77777777766543210001133343


Q ss_pred             E---ccCCCCC-----CCCCCcceEEeccccccCCC-------hHHHHHHHHHhccCCcEEEEE
Q 019957          225 R---ADVCRLP-----FASGFVDAVHAGAALHCWPS-------PSNAVAEISRILRSGGVFVGT  273 (333)
Q Consensus       225 ~---~d~~~lp-----~~~~~fD~V~~~~vl~h~~d-------~~~~l~~~~r~LkpgG~l~i~  273 (333)
                      .   .+++.+.     ..++..=+|-+...|||+.+       |...+=...+.|+|.-++++.
T Consensus       180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E  243 (374)
T PF03514_consen  180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE  243 (374)
T ss_pred             ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence            3   2333331     22333334556677888862       333333444578998555543

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>PRK13699 putative methylase; Provisional

Probab=93.88  E-value=0.18  Score=43.90  Aligned_cols=74  Identities=12%  Similarity=0.154  Sum_probs=43.3

Q ss_pred             EEEEccCCCC--CCCCCCcceEEecccc----c-cCC---------C-hHHHHHHHHHhccCCcEEEEEEecccCCCcch
Q 019957          222 ALVRADVCRL--PFASGFVDAVHAGAAL----H-CWP---------S-PSNAVAEISRILRSGGVFVGTTFLRYTSSTSL  284 (333)
Q Consensus       222 ~~~~~d~~~l--p~~~~~fD~V~~~~vl----~-h~~---------d-~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~  284 (333)
                      +++.+|..++  .++++++|+|+..--.    . +..         + ....+.++.|+|||||.+++.....       
T Consensus         3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~-------   75 (227)
T PRK13699          3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN-------   75 (227)
T ss_pred             eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc-------
Confidence            3555665432  3456777777764111    0 000         0 1467899999999999887633110       


Q ss_pred             hhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEE
Q 019957          285 TGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT  318 (333)
Q Consensus       285 ~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~  318 (333)
                                      ....+...++++||.+..
T Consensus        76 ----------------~~~~~~~al~~~GF~l~~   93 (227)
T PRK13699         76 ----------------RVDRFMAAWKNAGFSVVG   93 (227)
T ss_pred             ----------------cHHHHHHHHHHCCCEEee
Confidence                            012455677888987654

>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[]

Probab=93.75  E-value=0.036  Score=33.07  Aligned_cols=28  Identities=18%  Similarity=0.526  Sum_probs=21.2

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCcc
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~   96 (333)
                      ..+.|+.|++.......          |.+.|..||+.
T Consensus         7 ~~~~C~~C~~~~~~~~d----------G~~yC~~cG~~   34 (36)
T PF11781_consen    7 PNEPCPVCGSRWFYSDD----------GFYYCDRCGHQ   34 (36)
T ss_pred             CCCcCCCCCCeEeEccC----------CEEEhhhCceE
Confidence            44679999998544433          79999999985

>PRK00432 30S ribosomal protein S27ae; Validated

Probab=93.73  E-value=0.044  Score=35.36  Aligned_cols=33  Identities=21%  Similarity=0.421  Sum_probs=22.3

Q ss_pred             cccCeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957           56 LEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        56 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      +....--||.|++.+....          .+.+.|..||..+.
T Consensus        16 v~~~~~fCP~Cg~~~m~~~----------~~r~~C~~Cgyt~~   48 (50)
T PRK00432         16 VKRKNKFCPRCGSGFMAEH----------LDRWHCGKCGYTEF   48 (50)
T ss_pred             EEEccCcCcCCCcchhecc----------CCcEECCCcCCEEe
Confidence            4445558999998632222          15899999998763

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=93.71  E-value=0.03  Score=42.35  Aligned_cols=80  Identities=16%  Similarity=0.250  Sum_probs=41.5

Q ss_pred             CcceEEeccccccCC----C--hHHHHHHHHHhccCCcEEEEEEecc--cCCCcchhhHHHHHhhhccCCCCCHHHHHHH
Q 019957          237 FVDAVHAGAALHCWP----S--PSNAVAEISRILRSGGVFVGTTFLR--YTSSTSLTGRVLRERILQNYNYLTEEEIEDL  308 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~----d--~~~~l~~~~r~LkpgG~l~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~l  308 (333)
                      +||+|+|..|.-++.    |  ...+++.+.+.|+|||.|++..-.-  +..... ......... .... +.++++...
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~-~~~~~~~n~-~~i~-lrP~~F~~~   77 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKR-LSEEIRENY-KSIK-LRPDQFEDY   77 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTT-S-HHHHHHH-HH-----GGGHHHH
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhh-hhHHHHhHH-hceE-EChHHHHHH
Confidence            489999988865432    2  2478999999999999999964221  100000 011111111 1222 456678887


Q ss_pred             HHh--CCCcEEEE
Q 019957          309 CTS--CGLTNYTS  319 (333)
Q Consensus       309 l~~--aGf~~v~~  319 (333)
                      |.+  .||..++.
T Consensus        78 L~~~evGF~~~e~   90 (110)
T PF06859_consen   78 LLEPEVGFSSVEE   90 (110)
T ss_dssp             HTSTTT---EEEE
T ss_pred             HHhcccceEEEEE
Confidence            776  69988764

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors []

Probab=93.64  E-value=0.055  Score=31.57  Aligned_cols=30  Identities=23%  Similarity=0.371  Sum_probs=23.8

Q ss_pred             CeecccCCCccccc-cCCCCccccccccCceeeCCCCcccc
Q 019957           59 DLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        59 ~~l~CP~C~~~l~~-~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      .+..|+.|++.+.. ...          +.+.|..||..|+
T Consensus         2 ~~~~C~~C~~~~i~~~~~----------~~~~C~~Cg~~~~   32 (33)
T PF08792_consen    2 NLKKCSKCGGNGIVNKED----------DYEVCIFCGSSFP   32 (33)
T ss_pred             CceEcCCCCCCeEEEecC----------CeEEcccCCcEee
Confidence            45689999998866 433          5899999998875

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=93.53  E-value=0.09  Score=47.76  Aligned_cols=123  Identities=22%  Similarity=0.202  Sum_probs=86.9

Q ss_pred             HHHHHHH-HHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHH-------HHHHHHhcCcCCCCCeEE
Q 019957          152 DEEFKMA-QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQ-------CYDFIKQDNTILTSNLAL  223 (333)
Q Consensus       152 ~~~~~~~-~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~-------a~~~~~~~~~~~~~~i~~  223 (333)
                      +.++.++ .+.....+|..|+|-=.|||.++...+..|.  -|+|.||+-.+++.       .+.++++.|.. ..-+.+
T Consensus       193 DAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa--~viGtDIDyr~vragrg~~~si~aNFkQYg~~-~~fldv  269 (421)
T KOG2671|consen  193 DAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA--YVIGTDIDYRTVRAGRGEDESIKANFKQYGSS-SQFLDV  269 (421)
T ss_pred             chhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcc--eeeccccchheeecccCCCcchhHhHHHhCCc-chhhhe
Confidence            3344333 3444456789999999999999988888765  89999999888773       35667777641 334678


Q ss_pred             EEccCCCCCCC-CCCcceEEecc---c---------------------cccCCCh---------HHHHHHHHHhccCCcE
Q 019957          224 VRADVCRLPFA-SGFVDAVHAGA---A---------------------LHCWPSP---------SNAVAEISRILRSGGV  269 (333)
Q Consensus       224 ~~~d~~~lp~~-~~~fD~V~~~~---v---------------------l~h~~d~---------~~~l~~~~r~LkpgG~  269 (333)
                      +.+|+...|.. +..||.|+|.-   |                     ..|.+..         ...|.-..+.|..||+
T Consensus       270 l~~D~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggr  349 (421)
T KOG2671|consen  270 LTADFSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGR  349 (421)
T ss_pred             eeecccCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCce
Confidence            89999887754 56899999841   1                     1233221         2456677899999999


Q ss_pred             EEEEEecc
Q 019957          270 FVGTTFLR  277 (333)
Q Consensus       270 l~i~~~~~  277 (333)
                      +++.-|..
T Consensus       350 lv~w~p~~  357 (421)
T KOG2671|consen  350 LVFWLPTI  357 (421)
T ss_pred             EEEecCch
Confidence            99877643

>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]

Probab=93.48  E-value=0.041  Score=42.82  Aligned_cols=29  Identities=31%  Similarity=0.514  Sum_probs=22.9

Q ss_pred             cCeecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      +....||.||.+|....           |.+.|+.|++..
T Consensus        26 ML~~hCp~Cg~PLF~Kd-----------G~v~CPvC~~~~   54 (131)
T COG1645          26 MLAKHCPKCGTPLFRKD-----------GEVFCPVCGYRE   54 (131)
T ss_pred             HHHhhCcccCCcceeeC-----------CeEECCCCCceE
Confidence            34457999999997733           699999999654

>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.43  E-value=0.036  Score=33.75  Aligned_cols=37  Identities=14%  Similarity=0.225  Sum_probs=18.1

Q ss_pred             ecccCCCccccccC-CCCccccccccCceeeCCCCccc
Q 019957           61 FSCPICYEPLIRKG-PTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        61 l~CP~C~~~l~~~~-~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      +.||.|++.-.... ......++-..-.+.|.+||+.|
T Consensus         1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~w   38 (39)
T PF01096_consen    1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRW   38 (39)
T ss_dssp             S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEE
T ss_pred             CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCee
Confidence            47999999421110 00111122233478899999876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=93.32  E-value=1.2  Score=40.61  Aligned_cols=95  Identities=18%  Similarity=0.221  Sum_probs=61.4

Q ss_pred             ccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC------CCCCC
Q 019957          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFASG  236 (333)
Q Consensus       164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l------p~~~~  236 (333)
                      ..++.+||..|+|. |..+..+++.. +.++++++.++...+.+++.    +      +..+..+-...      ....+
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~----g------~~~~~~~~~~~~~~~~~~~~~~  231 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKEL----G------ADEVLNSLDDSPKDKKAAGLGG  231 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh----C------CCEEEcCCCcCHHHHHHHhcCC
Confidence            45577888888764 77777777764 34799999999888777542    1      11111111110      11245


Q ss_pred             CcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      .+|+|+....      ....++++.+.|+++|.++....
T Consensus       232 ~~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~  264 (338)
T cd08254         232 GFDVIFDFVG------TQPTFEDAQKAVKPGGRIVVVGL  264 (338)
T ss_pred             CceEEEECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence            6898875321      13468889999999999987643

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK10220 hypothetical protein; Provisional

Probab=93.28  E-value=0.069  Score=39.89  Aligned_cols=33  Identities=18%  Similarity=0.571  Sum_probs=25.9

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCccccCcC
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD  101 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~  101 (333)
                      .+-.||.|++...-...          ..+.|+.|+|.|...+
T Consensus         2 ~lP~CP~C~seytY~d~----------~~~vCpeC~hEW~~~~   34 (111)
T PRK10220          2 SLPHCPKCNSEYTYEDN----------GMYICPECAHEWNDAE   34 (111)
T ss_pred             CCCcCCCCCCcceEcCC----------CeEECCcccCcCCccc
Confidence            45679999998866554          4899999999986554

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=93.23  E-value=0.31  Score=44.98  Aligned_cols=43  Identities=23%  Similarity=0.236  Sum_probs=35.7

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD  208 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~  208 (333)
                      .+-..|+|+|.|.|++++.+.-.+ +..|.++|-|....+.|++
T Consensus       152 ~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  152 TGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             cCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence            445689999999999999998775 6699999999877766654

>COG1656 Uncharacterized conserved protein [Function unknown]

Probab=93.18  E-value=0.039  Score=44.64  Aligned_cols=45  Identities=24%  Similarity=0.483  Sum_probs=27.5

Q ss_pred             cccCeecccCCCccccccCCCCcc------ccccccCceeeCCCCccccCc
Q 019957           56 LEGDLFSCPICYEPLIRKGPTGLT------LGAIYRSGFKCRKCDKTYSSK  100 (333)
Q Consensus        56 ~~~~~l~CP~C~~~l~~~~~~~~~------~~~~~~~~~~C~~C~~~~~~~  100 (333)
                      +....-+||.|+++|.........      .-..+...++|++||..|...
T Consensus        93 ~~~e~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~~CgkiYW~G  143 (165)
T COG1656          93 LFPEFSRCPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCPKCGKIYWKG  143 (165)
T ss_pred             cccccccCcccCCEeccCcHHHHhhccchhhhhcccceeECCCCcccccCc
Confidence            345677999999988654332100      011122366799999988443

>PTZ00357 methyltransferase; Provisional

Probab=93.13  E-value=0.71  Score=46.01  Aligned_cols=100  Identities=17%  Similarity=0.198  Sum_probs=64.9

Q ss_pred             eEEEEcCCcCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCcC------CCCCeEEEEccCCCCCCC----
Q 019957          169 LLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTI------LTSNLALVRADVCRLPFA----  234 (333)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~------~~~~i~~~~~d~~~lp~~----  234 (333)
                      .|+-+|+|-|-+.....+.    +-..+++++|-++..+.....+......|      ....++++..|+..+..+    
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            5899999999887655443    44568999999976554544443222221      134589999999876422    


Q ss_pred             -------CCCcceEEeccccccCCCh---HHHHHHHHHhccC----CcE
Q 019957          235 -------SGFVDAVHAGAALHCWPSP---SNAVAEISRILRS----GGV  269 (333)
Q Consensus       235 -------~~~fD~V~~~~vl~h~~d~---~~~l~~~~r~Lkp----gG~  269 (333)
                             -+++|+|++ ..|..+.|-   .+.|..+.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence                   137999987 223333332   4678888888876    776

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=93.07  E-value=0.056  Score=43.81  Aligned_cols=41  Identities=24%  Similarity=0.506  Sum_probs=23.3

Q ss_pred             ecccCCCccccccCCC-CccccccccCceeeCCCCccccCcC
Q 019957           61 FSCPICYEPLIRKGPT-GLTLGAIYRSGFKCRKCDKTYSSKD  101 (333)
Q Consensus        61 l~CP~C~~~l~~~~~~-~~~~~~~~~~~~~C~~C~~~~~~~~  101 (333)
                      +.||-|+++......+ ....+.......+|++||..|..-+
T Consensus         1 m~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~e   42 (154)
T PRK00464          1 MRCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTFE   42 (154)
T ss_pred             CcCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEeE
Confidence            5799999865322211 1111112222478999999995443

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=92.79  E-value=0.23  Score=44.82  Aligned_cols=110  Identities=12%  Similarity=0.073  Sum_probs=72.6

Q ss_pred             CeEEEEcCCcCHHHHHHHHhC--------------------CCCeEEEEeCCH--HHHHHHHHHHHhc------------
Q 019957          168 GLLVDVSCGSGLFSRKFAKSG--------------------TYSGVVALDFSE--NMLRQCYDFIKQD------------  213 (333)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~--------------------~~~~v~g~D~s~--~~~~~a~~~~~~~------------  213 (333)
                      .+||-||.|.|.=...++...                    +...++.+|+.+  ..+......+...            
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            689999999975444333322                    114899999875  3444444443332            


Q ss_pred             Cc--CCCCCeEEEEccCCCCCCC-------CCCcceEEeccccccC-----CChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          214 NT--ILTSNLALVRADVCRLPFA-------SGFVDAVHAGAALHCW-----PSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       214 ~~--~~~~~i~~~~~d~~~lp~~-------~~~fD~V~~~~vl~h~-----~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      ..  ...-++.|.+.|+..+..+       ....|+|+..+.++.+     ....++|..+-..++||..|+|++...
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG  245 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG  245 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence            00  0123678999999776532       1357899888877543     445689999999999999999987543

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=92.76  E-value=0.098  Score=46.64  Aligned_cols=102  Identities=18%  Similarity=0.231  Sum_probs=70.3

Q ss_pred             CCeEEEEcCCcCHHHH-HHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957          167 GGLLVDVSCGSGLFSR-KFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~-~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (333)
                      +..|.|+=+|.|+|+. .+...+ ...|+++|.++..++..++.++.+++  ..+...+.+|-.... .+...|-|....
T Consensus       195 ~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~V--~~r~~i~~gd~R~~~-~~~~AdrVnLGL  270 (351)
T KOG1227|consen  195 GEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANNV--MDRCRITEGDNRNPK-PRLRADRVNLGL  270 (351)
T ss_pred             cchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcch--HHHHHhhhccccccC-ccccchheeecc
Confidence            5789999999999998 666666 56999999999999999998887764  444455555544432 356677776543


Q ss_pred             ccccCCChHHHHHHHHHhccCC-c-EEEEEEec
Q 019957          246 ALHCWPSPSNAVAEISRILRSG-G-VFVGTTFL  276 (333)
Q Consensus       246 vl~h~~d~~~~l~~~~r~Lkpg-G-~l~i~~~~  276 (333)
                          +|...+-.-.+-.+|||. | .+-+.+..
T Consensus       271 ----lPSse~~W~~A~k~Lk~eggsilHIHenV  299 (351)
T KOG1227|consen  271 ----LPSSEQGWPTAIKALKPEGGSILHIHENV  299 (351)
T ss_pred             ----ccccccchHHHHHHhhhcCCcEEEEeccc
Confidence                344455455566777764 4 44444433

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=92.74  E-value=3.3  Score=36.99  Aligned_cols=97  Identities=24%  Similarity=0.181  Sum_probs=59.2

Q ss_pred             ccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc-cC-CCC-CC-CCCCc
Q 019957          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DV-CRL-PF-ASGFV  238 (333)
Q Consensus       164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~-~~l-p~-~~~~f  238 (333)
                      ..++.+||=+|+|. |.++..+++......++++|.++..++.+++.    |    .. .++.. +. ..+ .. ....+
T Consensus       118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----G----a~-~~i~~~~~~~~~~~~~~~~g~  188 (280)
T TIGR03366       118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----G----AT-ALAEPEVLAERQGGLQNGRGV  188 (280)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----C----Cc-EecCchhhHHHHHHHhCCCCC
Confidence            34678899999875 77777777664223489999998887777652    1    11 11110 10 000 00 12358


Q ss_pred             ceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      |+|+-.-     .. ...++.+.+.|+++|++++...
T Consensus       189 d~vid~~-----G~-~~~~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       189 DVALEFS-----GA-TAAVRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             CEEEECC-----CC-hHHHHHHHHHhcCCCEEEEecc
Confidence            8886432     12 3457888999999999987664

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=92.69  E-value=1.8  Score=39.70  Aligned_cols=94  Identities=17%  Similarity=0.094  Sum_probs=59.9

Q ss_pred             hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcce
Q 019957          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA  240 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~  240 (333)
                      ....++.+||=.|+|. |.++..+++.. +..+++++.++..++.+++.    |      .+.+. +..+.  ..+.+|+
T Consensus       161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~----G------a~~vi-~~~~~--~~~~~d~  226 (329)
T TIGR02822       161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALAL----G------AASAG-GAYDT--PPEPLDA  226 (329)
T ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHh----C------Cceec-ccccc--CcccceE
Confidence            3455688999999764 66666666664 44799999998887777662    1      11111 11111  1235787


Q ss_pred             EEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ++....     .+ ..+....+.|++||++++.-.
T Consensus       227 ~i~~~~-----~~-~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       227 AILFAP-----AG-GLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             EEECCC-----cH-HHHHHHHHhhCCCcEEEEEec
Confidence            654332     12 368888899999999988654

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins

Probab=92.59  E-value=0.062  Score=40.91  Aligned_cols=22  Identities=32%  Similarity=0.899  Sum_probs=18.6

Q ss_pred             ccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           63 CPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        63 CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      ||+|++++...             .++|++|+...
T Consensus         1 CPvCg~~l~vt-------------~l~C~~C~t~i   22 (113)
T PF09862_consen    1 CPVCGGELVVT-------------RLKCPSCGTEI   22 (113)
T ss_pred             CCCCCCceEEE-------------EEEcCCCCCEE
Confidence            99999999664             78999998754

>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.49  E-value=0.04  Score=42.07  Aligned_cols=45  Identities=24%  Similarity=0.496  Sum_probs=28.2

Q ss_pred             ccCeecccCCCccccccCC--CCccccccccCceeeCCCCccccCcC
Q 019957           57 EGDLFSCPICYEPLIRKGP--TGLTLGAIYRSGFKCRKCDKTYSSKD  101 (333)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~--~~~~~~~~~~~~~~C~~C~~~~~~~~  101 (333)
                      +..+++||+|..+..-...  ....++.-|...-.|.+||..||..+
T Consensus        36 eati~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpwte   82 (160)
T COG4306          36 EATITQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPWTE   82 (160)
T ss_pred             hHHHhcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCcHH
Confidence            3468899999886532211  11222333344567999999998764

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=92.47  E-value=0.62  Score=42.94  Aligned_cols=48  Identities=13%  Similarity=0.153  Sum_probs=37.6

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHh----CC----CCeEEEEeCCHHHHHHHHHHHHhc
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKS----GT----YSGVVALDFSENMLRQCYDFIKQD  213 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~----~~----~~~v~g~D~s~~~~~~a~~~~~~~  213 (333)
                      .+..++|+|.|.|.++..+.+.    .|    ..++..+|+|+...+.=++.++..
T Consensus        77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            3568999999999998877654    22    568999999999887777776653

>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA

Probab=92.45  E-value=0.092  Score=39.22  Aligned_cols=32  Identities=19%  Similarity=0.513  Sum_probs=25.1

Q ss_pred             eecccCCCccccccCCCCccccccccCceeeCCCCccccCcC
Q 019957           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD  101 (333)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~  101 (333)
                      +-.||.|++...-...          ..+.|+.|+|.+....
T Consensus         2 lp~CP~C~seytY~dg----------~~~iCpeC~~EW~~~~   33 (109)
T TIGR00686         2 LPPCPKCNSEYTYHDG----------TQLICPSCLYEWNENE   33 (109)
T ss_pred             CCcCCcCCCcceEecC----------CeeECccccccccccc
Confidence            3579999998866554          4899999999986553

The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).

>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains

Probab=92.35  E-value=0.11  Score=30.13  Aligned_cols=27  Identities=19%  Similarity=0.349  Sum_probs=15.2

Q ss_pred             cccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      =||.||++......         ....+|+.|++.+
T Consensus         5 fC~~CG~~t~~~~~---------g~~r~C~~Cg~~~   31 (32)
T PF09297_consen    5 FCGRCGAPTKPAPG---------GWARRCPSCGHEH   31 (32)
T ss_dssp             B-TTT--BEEE-SS---------SS-EEESSSS-EE
T ss_pred             ccCcCCccccCCCC---------cCEeECCCCcCEe
Confidence            39999998766543         1378899999764

; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=92.23  E-value=0.087  Score=32.27  Aligned_cols=38  Identities=16%  Similarity=0.299  Sum_probs=20.9

Q ss_pred             ecccCCCcccccc-CCCCccccccccCceeeCCCCcccc
Q 019957           61 FSCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        61 l~CP~C~~~l~~~-~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      ..||.|++.-... .....+.++-..-.+.|.+|++.+.
T Consensus         1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w~   39 (40)
T smart00440        1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRWR   39 (40)
T ss_pred             CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEeC
Confidence            3699999842111 0001112222234789999998763

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=92.16  E-value=0.17  Score=48.22  Aligned_cols=106  Identities=22%  Similarity=0.271  Sum_probs=79.6

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC----CCCCCCcc
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVD  239 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD  239 (333)
                      .++.+|||.=+++|.-+...+...++ .++++-|.++..+...+++.+.++.  ...+.....|+..+    +-....||
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v--~~ive~~~~DA~~lM~~~~~~~~~FD  185 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV--EDIVEPHHSDANVLMYEHPMVAKFFD  185 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc--hhhcccccchHHHHHHhccccccccc
Confidence            34668999999999877766666433 5799999999999999998887664  44556666666543    22356899


Q ss_pred             eEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      +|-.    .-+..+..+|+.+.+.++.||.|.++.-.
T Consensus       186 vIDL----DPyGs~s~FLDsAvqav~~gGLL~vT~TD  218 (525)
T KOG1253|consen  186 VIDL----DPYGSPSPFLDSAVQAVRDGGLLCVTCTD  218 (525)
T ss_pred             eEec----CCCCCccHHHHHHHHHhhcCCEEEEEecc
Confidence            9864    33445678999999999999999987643

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=92.11  E-value=0.31  Score=42.90  Aligned_cols=114  Identities=14%  Similarity=0.132  Sum_probs=62.3

Q ss_pred             HhhcccCCCeEEEEcCCcCHHHHHHHH---hC--CCCeEEEEeC--------------------------CHHHHHHHHH
Q 019957          160 EYFKSAQGGLLVDVSCGSGLFSRKFAK---SG--TYSGVVALDF--------------------------SENMLRQCYD  208 (333)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~G~~~~~l~~---~~--~~~~v~g~D~--------------------------s~~~~~~a~~  208 (333)
                      ..+...-++-|+|.||-.|..+..++.   ..  .+.+++++|-                          ....++..++
T Consensus        68 ~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~  147 (248)
T PF05711_consen   68 QVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRE  147 (248)
T ss_dssp             HCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHH
T ss_pred             HHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHH
Confidence            333333356899999999976654432   21  2446888882                          0124555555


Q ss_pred             HHHhcCcCCCCCeEEEEccCCC-CC-CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          209 FIKQDNTILTSNLALVRADVCR-LP-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       209 ~~~~~~~~~~~~i~~~~~d~~~-lp-~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ++...++. ..++.++.|.+.+ +| .+.+++-++..-.=  ........|..++..|.|||++++-+++
T Consensus       148 n~~~~gl~-~~~v~~vkG~F~dTLp~~p~~~IAll~lD~D--lYesT~~aLe~lyprl~~GGiIi~DDY~  214 (248)
T PF05711_consen  148 NFARYGLL-DDNVRFVKGWFPDTLPDAPIERIALLHLDCD--LYESTKDALEFLYPRLSPGGIIIFDDYG  214 (248)
T ss_dssp             CCCCTTTS-STTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred             HHHHcCCC-cccEEEECCcchhhhccCCCccEEEEEEecc--chHHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence            55555531 4689999999854 44 22233333322111  1112357899999999999999997754

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=92.11  E-value=1.3  Score=41.04  Aligned_cols=94  Identities=13%  Similarity=0.064  Sum_probs=58.3

Q ss_pred             cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeC---CHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC--CCCCCCc
Q 019957          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDF---SENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFV  238 (333)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~---s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~f  238 (333)
                      .++.+||=+|+|. |.++..+++.. ..++++++.   ++..++.+++.    |      ...+...-++.  ....+.+
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~----G------a~~v~~~~~~~~~~~~~~~~  239 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEEL----G------ATYVNSSKTPVAEVKLVGEF  239 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHc----C------CEEecCCccchhhhhhcCCC
Confidence            4677899999876 77777777764 348999986   56666666541    1      12221110110  0012468


Q ss_pred             ceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      |+|+-.-.     . ...+.+..+.|++||.+++...
T Consensus       240 d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         240 DLIIEATG-----V-PPLAFEALPALAPNGVVILFGV  270 (355)
T ss_pred             CEEEECcC-----C-HHHHHHHHHHccCCcEEEEEec
Confidence            88875432     2 2367888999999999887654

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=91.87  E-value=0.1  Score=33.93  Aligned_cols=26  Identities=23%  Similarity=0.671  Sum_probs=21.4

Q ss_pred             ecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      -.|+.|+..+...++           .+.|+.||..|
T Consensus         6 ~~C~~Cg~~~~~~dD-----------iVvCp~Cgapy   31 (54)
T PF14446_consen    6 CKCPVCGKKFKDGDD-----------IVVCPECGAPY   31 (54)
T ss_pred             ccChhhCCcccCCCC-----------EEECCCCCCcc
Confidence            479999998865553           89999999877

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=91.86  E-value=4.4  Score=37.13  Aligned_cols=98  Identities=14%  Similarity=0.070  Sum_probs=59.4

Q ss_pred             hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC---CC-C-CC
Q 019957          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC---RL-P-FA  234 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~---~l-p-~~  234 (333)
                      +...++.+||=+|+|. |.++..+++.. +.+ ++++|.++...+.+++.    |   .  -.++...-.   .+ . ..
T Consensus       159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~----g---a--~~~i~~~~~~~~~~~~~~~  228 (339)
T cd08239         159 VGVSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKAL----G---A--DFVINSGQDDVQEIRELTS  228 (339)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh----C---C--CEEEcCCcchHHHHHHHhC
Confidence            3445678888898865 66666677664 335 99999998887777552    1   0  111111100   01 0 11


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ...+|+|+-...     . ...+....+.|+++|.+++...
T Consensus       229 ~~~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         229 GAGADVAIECSG-----N-TAARRLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             CCCCCEEEECCC-----C-HHHHHHHHHHhhcCCEEEEEcC
Confidence            236898874321     1 2346777889999999987654

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=91.84  E-value=2.5  Score=39.28  Aligned_cols=98  Identities=16%  Similarity=0.119  Sum_probs=60.2

Q ss_pred             cccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-----C-CCC
Q 019957          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P-FAS  235 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p-~~~  235 (333)
                      ...++.+||=.|+|. |.++..+++......++++|.++..++.+++.    |     --.++...-.+.     . ...
T Consensus       173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----G-----a~~~i~~~~~~~~~~i~~~~~~  243 (358)
T TIGR03451       173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----G-----ATHTVNSSGTDPVEAIRALTGG  243 (358)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C-----CceEEcCCCcCHHHHHHHHhCC
Confidence            345678999999865 67777777765223599999999888887652    1     111221111110     0 112


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ..+|+|+-.     +..+ ..++...+.+++||++++.-.
T Consensus       244 ~g~d~vid~-----~g~~-~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       244 FGADVVIDA-----VGRP-ETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             CCCCEEEEC-----CCCH-HHHHHHHHHhccCCEEEEECC
Confidence            358888743     2223 357778889999999987653

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=91.63  E-value=3.6  Score=37.33  Aligned_cols=160  Identities=15%  Similarity=0.107  Sum_probs=95.8

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--  232 (333)
                      +.+...+... ...|+-+|||--  ++..+-.++ ...|+-+|. |+.++.=++.+.+.+........++..|+.+-.  
T Consensus        83 ~~~~~~~~~g-~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~  158 (297)
T COG3315          83 DFVRAALDAG-IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWP  158 (297)
T ss_pred             HHHHHHHHhc-ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchH
Confidence            3444555444 568999999864  333333333 245555553 666666666677655322337899999997432  


Q ss_pred             --CCCCCcc-----eEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcch--hhHH--HHH----hhhc
Q 019957          233 --FASGFVD-----AVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSL--TGRV--LRE----RILQ  295 (333)
Q Consensus       233 --~~~~~fD-----~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~--~~~~--~~~----~~~~  295 (333)
                        +....||     ++++-+++.+++..  .++|+.|.....||-.++.............  ....  ...    ....
T Consensus       159 ~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  238 (297)
T COG3315         159 QALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGEL  238 (297)
T ss_pred             HHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccc
Confidence              2223333     67788888888654  4789999999889888888764211000000  0000  000    0113


Q ss_pred             cCCCCCHHHHHHHHHhCCCcEEEE
Q 019957          296 NYNYLTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       296 ~~~~~t~~~l~~ll~~aGf~~v~~  319 (333)
                      .+......++..++.+.||.....
T Consensus       239 ~~~~~~~~e~~~~l~~~g~~~~~~  262 (297)
T COG3315         239 VYFGDDPAEIETWLAERGWRSTLN  262 (297)
T ss_pred             eeccCCHHHHHHHHHhcCEEEEec
Confidence            344456899999999999988764

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=91.60  E-value=2.2  Score=39.85  Aligned_cols=98  Identities=28%  Similarity=0.230  Sum_probs=60.0

Q ss_pred             cccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-----CCCCC
Q 019957          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASG  236 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~  236 (333)
                      ...++.+||=.|+|. |.++..+++......|+++|.++..++.+++.    |     -..++...-.++     ....+
T Consensus       188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----G-----a~~~i~~~~~~~~~~i~~~~~~  258 (371)
T cd08281         188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----G-----ATATVNAGDPNAVEQVRELTGG  258 (371)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----C-----CceEeCCCchhHHHHHHHHhCC
Confidence            345677888899875 67777777764223699999999888877652    1     111111111110     01123


Q ss_pred             CcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      .+|+|+-.-     .. ...+....+.|+++|.+++...
T Consensus       259 g~d~vid~~-----G~-~~~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         259 GVDYAFEMA-----GS-VPALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             CCCEEEECC-----CC-hHHHHHHHHHHhcCCEEEEEcc
Confidence            588887432     11 2457788899999999887653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=91.57  E-value=0.11  Score=39.33  Aligned_cols=30  Identities=20%  Similarity=0.577  Sum_probs=23.1

Q ss_pred             ecccCCCccccccCCCCccccccccCceeeCCCCccccCc
Q 019957           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (333)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  100 (333)
                      -.||.||..+.-...          ....|+.||..|+..
T Consensus        10 R~Cp~CG~kFYDLnk----------~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDLNK----------DPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccCCC----------CCccCCCCCCccCcc
Confidence            369999998754433          367899999999766

The function of members of this family is unknown.

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=91.56  E-value=0.17  Score=31.69  Aligned_cols=28  Identities=21%  Similarity=0.496  Sum_probs=21.4

Q ss_pred             eecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      .+.|..||........          +.++|+.||+.-
T Consensus         2 ~Y~C~~Cg~~~~~~~~----------~~irC~~CG~rI   29 (44)
T smart00659        2 IYICGECGRENEIKSK----------DVVRCRECGYRI   29 (44)
T ss_pred             EEECCCCCCEeecCCC----------CceECCCCCceE
Confidence            4789999997755422          589999999864

present in RNA polymerase I, II and III

>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr

Probab=91.53  E-value=0.089  Score=33.48  Aligned_cols=38  Identities=16%  Similarity=0.321  Sum_probs=24.0

Q ss_pred             cccCCCccccccCCCCccccccccCceeeCC--CCccccCc
Q 019957           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRK--CDKTYSSK  100 (333)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~--C~~~~~~~  100 (333)
                      .||.||+....... ..-.+.+..-++.|.+  ||+.|...
T Consensus         1 ~CP~Cg~~a~ir~S-~~~s~~~~~~Y~qC~N~~Cg~tfv~~   40 (47)
T PF04606_consen    1 RCPHCGSKARIRTS-RQLSPLTRELYCQCTNPECGHTFVAN   40 (47)
T ss_pred             CcCCCCCeeEEEEc-hhhCcceEEEEEEECCCcCCCEEEEE
Confidence            49999996533221 1122334445789999  99998544

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent

>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=91.49  E-value=0.077  Score=38.52  Aligned_cols=31  Identities=26%  Similarity=0.833  Sum_probs=22.5

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      ..+.||.|+........         .|++.|..|+..|.
T Consensus        34 ~ky~Cp~Cgk~~vkR~a---------~GIW~C~~C~~~~A   64 (90)
T PF01780_consen   34 AKYTCPFCGKTSVKRVA---------TGIWKCKKCGKKFA   64 (90)
T ss_dssp             S-BEESSSSSSEEEEEE---------TTEEEETTTTEEEE
T ss_pred             CCCcCCCCCCceeEEee---------eEEeecCCCCCEEe
Confidence            35689999997644332         37999999998764

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....

>PF14353 CpXC: CpXC protein

Probab=91.45  E-value=0.1  Score=40.99  Aligned_cols=41  Identities=20%  Similarity=0.444  Sum_probs=23.9

Q ss_pred             ecccCCCccccccCCCCcc-------ccccccC---ceeeCCCCccccCcC
Q 019957           61 FSCPICYEPLIRKGPTGLT-------LGAIYRS---GFKCRKCDKTYSSKD  101 (333)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~-------~~~~~~~---~~~C~~C~~~~~~~~  101 (333)
                      +.||.|+...........+       ...+..|   .+.|++||+.+...-
T Consensus         2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~   52 (128)
T PF14353_consen    2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEY   52 (128)
T ss_pred             cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCC
Confidence            6899999965332221111       1112222   568999999986543

>smart00661 RPOL9 RNA polymerase subunit 9

Probab=90.98  E-value=0.21  Score=32.29  Aligned_cols=34  Identities=32%  Similarity=0.606  Sum_probs=22.7

Q ss_pred             cccCCCccccccCCCCccccccccCceeeCCCCccccCcCC
Q 019957           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN  102 (333)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g  102 (333)
                      -||.||+-+.......       ...+.|+.||+.+.....
T Consensus         2 FCp~Cg~~l~~~~~~~-------~~~~vC~~Cg~~~~~~~~   35 (52)
T smart00661        2 FCPKCGNMLIPKEGKE-------KRRFVCRKCGYEEPIEQK   35 (52)
T ss_pred             CCCCCCCccccccCCC-------CCEEECCcCCCeEECCCc
Confidence            3999999664443210       137899999988866543

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=90.78  E-value=0.95  Score=40.17  Aligned_cols=66  Identities=23%  Similarity=0.307  Sum_probs=44.2

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHhC-----CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKSG-----TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (333)
                      ..+...++|+|||.|.++.++....     +...++.+|....-.+ +..++.....  .+.+.-+..|+.++.
T Consensus        16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K-~D~~~~~~~~--~~~~~R~riDI~dl~   86 (259)
T PF05206_consen   16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK-ADNKIRKDES--EPKFERLRIDIKDLD   86 (259)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc-chhhhhccCC--CCceEEEEEEeeccc
Confidence            3456689999999999999999876     4468999998654332 2223332210  135666777877764

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=90.77  E-value=0.12  Score=34.07  Aligned_cols=35  Identities=26%  Similarity=0.506  Sum_probs=19.8

Q ss_pred             cCeecccCCCccccccCCCCccccccccCceeeCCCCcc
Q 019957           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (333)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~   96 (333)
                      ...|.||.||...+..-..-..    ....++|++||..
T Consensus        25 ~v~F~CPnCGe~~I~Rc~~CRk----~g~~Y~Cp~CGF~   59 (61)
T COG2888          25 AVKFPCPNCGEVEIYRCAKCRK----LGNPYRCPKCGFE   59 (61)
T ss_pred             eeEeeCCCCCceeeehhhhHHH----cCCceECCCcCcc
Confidence            3567899999654332111000    1247889988853

>PRK10458 DNA cytosine methylase; Provisional

Probab=90.72  E-value=5.2  Score=38.75  Aligned_cols=73  Identities=16%  Similarity=0.201  Sum_probs=48.9

Q ss_pred             HHHHHHHHhhcccC------CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc
Q 019957          153 EEFKMAQEYFKSAQ------GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (333)
Q Consensus       153 ~~~~~~~~~l~~~~------~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~  226 (333)
                      .....+.+++...+      .-+++|+=||.|.+..-+...|. ..+.++|+++.+.+.-+.+...     .+....+.+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG~-~~v~a~Eid~~A~~TY~~N~~~-----~p~~~~~~~  141 (467)
T PRK10458         68 AEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIGG-QCVFTSEWNKHAVRTYKANWYC-----DPATHRFNE  141 (467)
T ss_pred             HHHHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcCC-EEEEEEechHHHHHHHHHHcCC-----CCccceecc
Confidence            34456666654322      45899999999999999988874 3678999999887776665321     123344455


Q ss_pred             cCCCC
Q 019957          227 DVCRL  231 (333)
Q Consensus       227 d~~~l  231 (333)
                      |+..+
T Consensus       142 DI~~i  146 (467)
T PRK10458        142 DIRDI  146 (467)
T ss_pred             ChhhC
Confidence            66554

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=90.70  E-value=0.15  Score=35.06  Aligned_cols=26  Identities=35%  Similarity=0.945  Sum_probs=16.9

Q ss_pred             ecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      +.||.|+.+|....           +.++|..|+..|
T Consensus         2 ~~CP~C~~~L~~~~-----------~~~~C~~C~~~~   27 (70)
T PF07191_consen    2 NTCPKCQQELEWQG-----------GHYHCEACQKDY   27 (70)
T ss_dssp             -B-SSS-SBEEEET-----------TEEEETTT--EE
T ss_pred             CcCCCCCCccEEeC-----------CEEECccccccc
Confidence            57999999987764           488888888776

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=90.64  E-value=4  Score=38.03  Aligned_cols=95  Identities=17%  Similarity=0.139  Sum_probs=53.6

Q ss_pred             cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE-ccCCCCCCCCCCcceEE
Q 019957          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRLPFASGFVDAVH  242 (333)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~~lp~~~~~fD~V~  242 (333)
                      .++.+||-.|+|. |.++..+++.. +.++++++.+......+.+.   .|   .  -.++. .+...+.-..+.+|+|+
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~---~G---a--~~vi~~~~~~~~~~~~~~~D~vi  252 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINR---LG---A--DSFLVSTDPEKMKAAIGTMDYII  252 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHh---CC---C--cEEEcCCCHHHHHhhcCCCCEEE
Confidence            4577888899875 77777777764 34788888776543222221   11   0  11111 01001110012478776


Q ss_pred             eccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      -.     +..+ ..+.+..+.|++||.++...
T Consensus       253 d~-----~g~~-~~~~~~~~~l~~~G~iv~vG  278 (360)
T PLN02586        253 DT-----VSAV-HALGPLLGLLKVNGKLITLG  278 (360)
T ss_pred             EC-----CCCH-HHHHHHHHHhcCCcEEEEeC
Confidence            43     2222 35788889999999998764

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=90.62  E-value=0.13  Score=28.19  Aligned_cols=24  Identities=21%  Similarity=0.480  Sum_probs=17.3

Q ss_pred             eecccCCCccccccCCCCccccccccCceeeCCCCcc
Q 019957           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (333)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~   96 (333)
                      ...||.||..+..             +.-.|++||+.
T Consensus         2 ~~~Cp~Cg~~~~~-------------~~~fC~~CG~~   25 (26)
T PF13248_consen    2 EMFCPNCGAEIDP-------------DAKFCPNCGAK   25 (26)
T ss_pred             cCCCcccCCcCCc-------------ccccChhhCCC
Confidence            4579999995422             36689999864

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=90.57  E-value=4.5  Score=39.64  Aligned_cols=129  Identities=14%  Similarity=0.117  Sum_probs=78.7

Q ss_pred             CCCCcHHHHHHHHHhhccc--CCCeEEEEcCCcCHHHHHHHHh---C-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCC
Q 019957          147 GFPGPDEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKS---G-TYSGVVALDFSENMLRQCYDFIKQDNTILTSN  220 (333)
Q Consensus       147 ~~~~~~~~~~~~~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~---~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~  220 (333)
                      .+..+...++.+.+.+.+.  ++..|.|.-||+|.++....+.   + ....++|.+....+...++.++.-.+.. ...
T Consensus       196 ~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~-~~t  274 (501)
T TIGR00497       196 EFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID-YAN  274 (501)
T ss_pred             eeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC-ccc
Confidence            3567788888877776653  4568999999999988754432   1 1246999999999999998875444321 112


Q ss_pred             eEEEEccCCC-CCC-CCCCcceEEeccc--------------------ccc----CCC-hHHHHHHHHHhccCCcEEEEE
Q 019957          221 LALVRADVCR-LPF-ASGFVDAVHAGAA--------------------LHC----WPS-PSNAVAEISRILRSGGVFVGT  273 (333)
Q Consensus       221 i~~~~~d~~~-lp~-~~~~fD~V~~~~v--------------------l~h----~~d-~~~~l~~~~r~LkpgG~l~i~  273 (333)
                      .....+|-.. ..+ ....||.|+++--                    +.|    ..+ -..++..+..+|++||...+.
T Consensus       275 ~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI  354 (501)
T TIGR00497       275 FNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV  354 (501)
T ss_pred             cCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence            2222233222 111 2345777765321                    112    111 136778888999999986665


Q ss_pred             Eec
Q 019957          274 TFL  276 (333)
Q Consensus       274 ~~~  276 (333)
                      -+.
T Consensus       355 ~~~  357 (501)
T TIGR00497       355 CFP  357 (501)
T ss_pred             ecC
Confidence            543

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=90.55  E-value=0.12  Score=27.41  Aligned_cols=22  Identities=23%  Similarity=0.588  Sum_probs=16.3

Q ss_pred             cccCCCccccccCCCCccccccccCceeeCCCCcc
Q 019957           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (333)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~   96 (333)
                      .||.||..+...             .-.|++||+.
T Consensus         1 ~Cp~CG~~~~~~-------------~~fC~~CG~~   22 (23)
T PF13240_consen    1 YCPNCGAEIEDD-------------AKFCPNCGTP   22 (23)
T ss_pred             CCcccCCCCCCc-------------CcchhhhCCc
Confidence            399999988432             4569999864

>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2

Probab=90.37  E-value=0.14  Score=30.31  Aligned_cols=31  Identities=26%  Similarity=0.470  Sum_probs=19.3

Q ss_pred             cccCCCccccccCCCCccccccccCceeeCCCCccccCc
Q 019957           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (333)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  100 (333)
                      =||.|+.-|.......        ....|++|+..+++.
T Consensus         3 FCp~C~nlL~p~~~~~--------~~~~C~~C~Y~~~~~   33 (35)
T PF02150_consen    3 FCPECGNLLYPKEDKE--------KRVACRTCGYEEPIS   33 (35)
T ss_dssp             BETTTTSBEEEEEETT--------TTEEESSSS-EEE-S
T ss_pred             eCCCCCccceEcCCCc--------cCcCCCCCCCccCCC
Confidence            4999999775543311        122899999887654

7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....

>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)

Probab=90.18  E-value=0.22  Score=30.65  Aligned_cols=25  Identities=32%  Similarity=0.687  Sum_probs=19.0

Q ss_pred             eecccCCCccccccCCCCccccccccCceeeCCCC
Q 019957           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCD   94 (333)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~   94 (333)
                      .-.||.|+.+|.....          +...|..|+
T Consensus        17 ~~~Cp~C~~PL~~~k~----------g~~~Cv~C~   41 (41)
T PF06677_consen   17 DEHCPDCGTPLMRDKD----------GKIYCVSCG   41 (41)
T ss_pred             cCccCCCCCeeEEecC----------CCEECCCCC
Confidence            3469999999977433          578899985

It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].

>COG1779 C4-type Zn-finger protein [General function prediction only]

Probab=90.16  E-value=0.16  Score=42.35  Aligned_cols=42  Identities=19%  Similarity=0.331  Sum_probs=26.1

Q ss_pred             cCeecccCCCccccccCC--CCccccccccCceeeCCCCccccC
Q 019957           58 GDLFSCPICYEPLIRKGP--TGLTLGAIYRSGFKCRKCDKTYSS   99 (333)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~--~~~~~~~~~~~~~~C~~C~~~~~~   99 (333)
                      ...+.||+|++.+.....  ..--++.+......|.+||..+..
T Consensus        12 ~~~~~CPvCg~~l~~~~~~~~IPyFG~V~i~t~~C~~CgYR~~D   55 (201)
T COG1779          12 ETRIDCPVCGGTLKAHMYLYDIPYFGEVLISTGVCERCGYRSTD   55 (201)
T ss_pred             eeeecCCcccceeeEEEeeecCCccceEEEEEEEccccCCcccc
Confidence            456789999996533221  111233444557789999987743

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=90.07  E-value=2.6  Score=40.11  Aligned_cols=99  Identities=8%  Similarity=0.010  Sum_probs=61.7

Q ss_pred             HHHHHHhhcc-cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957          155 FKMAQEYFKS-AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (333)
Q Consensus       155 ~~~~~~~l~~-~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (333)
                      ++.+.+..+. .++.+|+=+|+|. |.....+++.. +.+|+++|.++..++.|+..          +.....  ..+. 
T Consensus       189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~----------G~~~~~--~~e~-  254 (413)
T cd00401         189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAME----------GYEVMT--MEEA-  254 (413)
T ss_pred             HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhc----------CCEEcc--HHHH-
Confidence            3444443332 4688999999997 76666555543 34899999999877777651          222221  1111 


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHH-HHHhccCCcEEEEEEe
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAE-ISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~-~~r~LkpgG~l~i~~~  275 (333)
                        -..+|+|+...     ..+ ..+.. ..+.+|+||+++....
T Consensus       255 --v~~aDVVI~at-----G~~-~~i~~~~l~~mk~GgilvnvG~  290 (413)
T cd00401         255 --VKEGDIFVTTT-----GNK-DIITGEHFEQMKDGAIVCNIGH  290 (413)
T ss_pred             --HcCCCEEEECC-----CCH-HHHHHHHHhcCCCCcEEEEeCC
Confidence              13579988642     223 34554 5889999999987663

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family

Probab=90.01  E-value=0.24  Score=32.38  Aligned_cols=38  Identities=18%  Similarity=0.273  Sum_probs=21.9

Q ss_pred             eecccCCCccccccCCCCccccccccCceeeCCCCccccC
Q 019957           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (333)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~   99 (333)
                      +..||.||+.-......  ..+....+.+.|.+||...+.
T Consensus         1 LkPCPfCGg~~~~~~~~--~~~~~~~~~~~C~~Cga~~~~   38 (53)
T TIGR03655         1 LKPCPFCGGADVYLRRG--FDPLDLSHYFECSTCGASGPV   38 (53)
T ss_pred             CCCCCCCCCcceeeEec--cCCCCCEEEEECCCCCCCccc
Confidence            35799999954321100  011122345689999988655

Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=89.72  E-value=4.4  Score=37.37  Aligned_cols=123  Identities=17%  Similarity=0.150  Sum_probs=81.2

Q ss_pred             CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC---CCCcceEEec
Q 019957          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAVHAG  244 (333)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~V~~~  244 (333)
                      -+++|+=||.|.+..-+...| ..-+.++|+++.+++.-+.+.        +...++..|+..+...   ...+|+++..
T Consensus         4 ~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~--------~~~~~~~~di~~~~~~~~~~~~~DvligG   74 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANF--------PHGDIILGDIKELDGEALRKSDVDVLIGG   74 (328)
T ss_pred             ceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhC--------CCCceeechHhhcChhhccccCCCEEEeC
Confidence            479999999999999999888 446899999999888777753        2245666777654311   1178999975


Q ss_pred             cccccC---------CChH----HHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHh
Q 019957          245 AALHCW---------PSPS----NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTS  311 (333)
Q Consensus       245 ~vl~h~---------~d~~----~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~  311 (333)
                      .-.+.+         .|+.    -.+.++...++|  .+++.+....      +..        + +.-+.+++.+.|++
T Consensus        75 pPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~g------l~~--------~-~~~~~~~i~~~L~~  137 (328)
T COG0270          75 PPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKG------LLS--------S-KGQTFDEIKKELEE  137 (328)
T ss_pred             CCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCch------HHh--------c-CchHHHHHHHHHHH
Confidence            444433         3443    234555566677  5555553321      011        1 33467899999999


Q ss_pred             CCCcE
Q 019957          312 CGLTN  316 (333)
Q Consensus       312 aGf~~  316 (333)
                      .|+.+
T Consensus       138 ~GY~~  142 (328)
T COG0270         138 LGYGV  142 (328)
T ss_pred             cCCcc
Confidence            99973

>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]

Probab=89.62  E-value=0.2  Score=41.59  Aligned_cols=35  Identities=14%  Similarity=0.343  Sum_probs=21.0

Q ss_pred             eecccCCCcccc--ccCCCCccccccccCceeeCCCCccccC
Q 019957           60 LFSCPICYEPLI--RKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (333)
Q Consensus        60 ~l~CP~C~~~l~--~~~~~~~~~~~~~~~~~~C~~C~~~~~~   99 (333)
                      -+.||.|++.-.  .....     ......++|.+||++++.
T Consensus         6 y~~Cp~Cg~eev~hEVik~-----~g~~~lvrC~eCG~V~~~   42 (201)
T COG1326           6 YIECPSCGSEEVSHEVIKE-----RGREPLVRCEECGTVHPA   42 (201)
T ss_pred             EEECCCCCcchhhHHHHHh-----cCCceEEEccCCCcEeec
Confidence            478999994211  10000     011247899999999954

>PLN02740 Alcohol dehydrogenase-like

Probab=89.62  E-value=4.8  Score=37.76  Aligned_cols=99  Identities=16%  Similarity=0.180  Sum_probs=60.4

Q ss_pred             hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc-----CCC-C-CC
Q 019957          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-----VCR-L-PF  233 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d-----~~~-l-p~  233 (333)
                      ....++.+||=+|+|. |.++..+++......|+++|.++..++.+++.    |     --.++...     +.+ + ..
T Consensus       194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----G-----a~~~i~~~~~~~~~~~~v~~~  264 (381)
T PLN02740        194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----G-----ITDFINPKDSDKPVHERIREM  264 (381)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----C-----CcEEEecccccchHHHHHHHH
Confidence            3445688999999875 77777777765223699999999888888652    1     11122111     100 0 01


Q ss_pred             CCCCcceEEeccccccCCChHHHHHHHHHhccCC-cEEEEEEe
Q 019957          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~  275 (333)
                      ..+.+|+|+-.-     ..+ ..+......+++| |++++...
T Consensus       265 ~~~g~dvvid~~-----G~~-~~~~~a~~~~~~g~G~~v~~G~  301 (381)
T PLN02740        265 TGGGVDYSFECA-----GNV-EVLREAFLSTHDGWGLTVLLGI  301 (381)
T ss_pred             hCCCCCEEEECC-----CCh-HHHHHHHHhhhcCCCEEEEEcc
Confidence            122588887532     222 4577777888886 98877543

>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.45  E-value=0.21  Score=34.88  Aligned_cols=36  Identities=22%  Similarity=0.564  Sum_probs=25.3

Q ss_pred             eecccCCCccccccCCCCccccccccCceeeCCCCccccCcCC
Q 019957           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN  102 (333)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g  102 (333)
                      ++-||+|+-.|.-....+.       .+-.|+.|+-++..+..
T Consensus         1 ~llCP~C~v~l~~~~rs~v-------EiD~CPrCrGVWLDrGE   36 (88)
T COG3809           1 MLLCPICGVELVMSVRSGV-------EIDYCPRCRGVWLDRGE   36 (88)
T ss_pred             CcccCcCCceeeeeeecCc-------eeeeCCccccEeecchh
Confidence            3679999998865544322       25579999988876543

>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function

Probab=89.41  E-value=0.28  Score=39.57  Aligned_cols=45  Identities=22%  Similarity=0.459  Sum_probs=26.9

Q ss_pred             ccCeecccCCCccccccCCCCc------cccccccCceeeCCCCccccCcC
Q 019957           57 EGDLFSCPICYEPLIRKGPTGL------TLGAIYRSGFKCRKCDKTYSSKD  101 (333)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~------~~~~~~~~~~~C~~C~~~~~~~~  101 (333)
                      +....+||.|++.+........      .....+...++|+.||..|....
T Consensus        88 ~~~~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiyW~Gs  138 (147)
T PF01927_consen   88 DPIFSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIYWEGS  138 (147)
T ss_pred             CCCCCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEecccc
Confidence            3346789999997755432111      01111223778999999985543

The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=89.33  E-value=0.32  Score=28.14  Aligned_cols=27  Identities=19%  Similarity=0.496  Sum_probs=18.0

Q ss_pred             ecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      +.|..|+........          ..++|+.||+.-
T Consensus         1 Y~C~~Cg~~~~~~~~----------~~irC~~CG~RI   27 (32)
T PF03604_consen    1 YICGECGAEVELKPG----------DPIRCPECGHRI   27 (32)
T ss_dssp             EBESSSSSSE-BSTS----------STSSBSSSS-SE
T ss_pred             CCCCcCCCeeEcCCC----------CcEECCcCCCeE
Confidence            368899987754432          468999999863

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]

Probab=89.32  E-value=0.21  Score=36.70  Aligned_cols=37  Identities=16%  Similarity=0.446  Sum_probs=25.1

Q ss_pred             cccCeecccCCCccccc---cCCCCccccccccCceeeCCCCcccc
Q 019957           56 LEGDLFSCPICYEPLIR---KGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        56 ~~~~~l~CP~C~~~l~~---~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      .....|.||.|++....   ...      ....+.+.|.+||..|.
T Consensus        18 ~L~k~FtCp~Cghe~vs~ctvkk------~~~~g~~~Cg~CGls~e   57 (104)
T COG4888          18 VLPKTFTCPRCGHEKVSSCTVKK------TVNIGTAVCGNCGLSFE   57 (104)
T ss_pred             cCCceEecCccCCeeeeEEEEEe------cCceeEEEcccCcceEE
Confidence            35568999999996433   111      11235789999999883

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=89.32  E-value=4.2  Score=36.99  Aligned_cols=123  Identities=17%  Similarity=0.158  Sum_probs=75.4

Q ss_pred             eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---CCCCCcceEEecc
Q 019957          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVHAGA  245 (333)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~V~~~~  245 (333)
                      +++|+=||.|.+..-+...| ...+.++|+++.+.+.-+.+.        +  ....+|+.++.   ++. .+|+++...
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~--------~--~~~~~Di~~~~~~~l~~-~~D~l~ggp   69 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANF--------P--EVICGDITEIDPSDLPK-DVDLLIGGP   69 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHH--------T--EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred             cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhcc--------c--ccccccccccccccccc-cceEEEecc
Confidence            68999999999999999998 346899999999888887763        2  67889998775   333 599998753


Q ss_pred             cccc---------CCChHH-H---HHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhC
Q 019957          246 ALHC---------WPSPSN-A---VAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC  312 (333)
Q Consensus       246 vl~h---------~~d~~~-~---l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~a  312 (333)
                      --.-         ..|+.. +   +-++.+.++|.-  ++.+....     + ...        ...-..+.+...|++.
T Consensus        70 PCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~--~~~ENV~~-----l-~~~--------~~~~~~~~i~~~l~~l  133 (335)
T PF00145_consen   70 PCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKY--FLLENVPG-----L-LSS--------KNGEVFKEILEELEEL  133 (335)
T ss_dssp             --TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SE--EEEEEEGG-----G-GTG--------GGHHHHHHHHHHHHHT
T ss_pred             CCceEeccccccccccccchhhHHHHHHHhhccceE--EEecccce-----e-ecc--------cccccccccccccccc
Confidence            3222         234432 2   333344557743  33333221     0 000        0002246788899999


Q ss_pred             CCcEEEE
Q 019957          313 GLTNYTS  319 (333)
Q Consensus       313 Gf~~v~~  319 (333)
                      |+.+...
T Consensus       134 GY~v~~~  140 (335)
T PF00145_consen  134 GYNVQWR  140 (335)
T ss_dssp             TEEEEEE
T ss_pred             ceeehhc
Confidence            9876543

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=89.26  E-value=5.9  Score=36.18  Aligned_cols=95  Identities=20%  Similarity=0.261  Sum_probs=58.4

Q ss_pred             cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc---CCCCCCCCCCcce
Q 019957          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD---VCRLPFASGFVDA  240 (333)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d---~~~lp~~~~~fD~  240 (333)
                      .++.+||-.|+|. |..+..+++......+++++.++...+.+++.    +   .  -.++..+   +..+....+.+|+
T Consensus       164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g---~--~~vi~~~~~~~~~~~~~~~~vd~  234 (339)
T cd08232         164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----G---A--DETVNLARDPLAAYAADKGDFDV  234 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----C---C--CEEEcCCchhhhhhhccCCCccE
Confidence            3677888888875 66777777664222689999888877755542    1   1  1112111   1112112235899


Q ss_pred             EEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      |+.....      ...++.+.+.|+++|+++...
T Consensus       235 vld~~g~------~~~~~~~~~~L~~~G~~v~~g  262 (339)
T cd08232         235 VFEASGA------PAALASALRVVRPGGTVVQVG  262 (339)
T ss_pred             EEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence            8864321      235788899999999998754

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PF14205 Cys_rich_KTR: Cysteine-rich KTR

Probab=89.05  E-value=0.26  Score=31.94  Aligned_cols=37  Identities=22%  Similarity=0.380  Sum_probs=21.7

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      ..+.||+||+.-......+..   ...-.+.|+.|.+...
T Consensus         3 ~Wi~CP~CgnKTR~kir~DT~---LkNfPlyCpKCK~Etl   39 (55)
T PF14205_consen    3 EWILCPICGNKTRLKIREDTV---LKNFPLYCPKCKQETL   39 (55)
T ss_pred             eEEECCCCCCccceeeecCce---eccccccCCCCCceEE
Confidence            457899999843222221121   1222688999987653

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=89.04  E-value=0.25  Score=38.11  Aligned_cols=30  Identities=7%  Similarity=0.047  Sum_probs=22.9

Q ss_pred             ecccCCCccccccCCCCccccccccCceeeCCCCccccCc
Q 019957           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (333)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  100 (333)
                      -.||.||..+.-...          ....|+.||..|+..
T Consensus        10 r~Cp~cg~kFYDLnk----------~p~vcP~cg~~~~~~   39 (129)
T TIGR02300        10 RICPNTGSKFYDLNR----------RPAVSPYTGEQFPPE   39 (129)
T ss_pred             ccCCCcCccccccCC----------CCccCCCcCCccCcc
Confidence            369999998754433          478999999998554

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=88.82  E-value=9.4  Score=32.70  Aligned_cols=112  Identities=13%  Similarity=0.062  Sum_probs=66.0

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcC----HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC-CC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSG----LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CR  230 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G----~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~  230 (333)
                      ++|..+..-.....|+++.++.|    .++...+.+.-+.+++++-+++..+...++.+...++  .+.++|+.++. ++
T Consensus        31 EfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~--~~~vEfvvg~~~e~  108 (218)
T PF07279_consen   31 EFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL--SDVVEFVVGEAPEE  108 (218)
T ss_pred             HHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc--cccceEEecCCHHH
Confidence            44444444444567999976544    2333333343355999999998888888888877664  44568888885 33


Q ss_pred             CCCCCCCcceEEeccccccCCChHHHHHHHHHhc--cCCcEEEEEEe
Q 019957          231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRIL--RSGGVFVGTTF  275 (333)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~L--kpgG~l~i~~~  275 (333)
                      +-..-...|+++...=      ...+.+++.+.+  .|.|-+++...
T Consensus       109 ~~~~~~~iDF~vVDc~------~~d~~~~vl~~~~~~~~GaVVV~~N  149 (218)
T PF07279_consen  109 VMPGLKGIDFVVVDCK------REDFAARVLRAAKLSPRGAVVVCYN  149 (218)
T ss_pred             HHhhccCCCEEEEeCC------chhHHHHHHHHhccCCCceEEEEec
Confidence            2212246888876432      233333444444  35576666543

The function of this family is unknown.

>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.79  E-value=0.32  Score=27.20  Aligned_cols=22  Identities=27%  Similarity=0.841  Sum_probs=11.0

Q ss_pred             cccCCCccccccCCCCccccccccCceeeCC
Q 019957           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRK   92 (333)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~   92 (333)
                      .||.|++.+......         -.++|.+
T Consensus         1 ~CP~C~s~l~~~~~e---------v~~~C~N   22 (28)
T PF03119_consen    1 TCPVCGSKLVREEGE---------VDIRCPN   22 (28)
T ss_dssp             B-TTT--BEEE-CCT---------TCEEE--
T ss_pred             CcCCCCCEeEcCCCC---------EeEECCC
Confidence            499999999765431         2677775

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.

>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.78  E-value=0.24  Score=36.66  Aligned_cols=27  Identities=33%  Similarity=0.781  Sum_probs=21.5

Q ss_pred             cCeecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      +.+..||.|+..++..             .++|++|+..-
T Consensus         4 ~~~~~cPvcg~~~iVT-------------eL~c~~~etTV   30 (122)
T COG3877           4 KVINRCPVCGRKLIVT-------------ELKCSNCETTV   30 (122)
T ss_pred             CCCCCCCcccccceeE-------------EEecCCCCceE
Confidence            4567899999988653             78999998753

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=88.68  E-value=7.3  Score=36.04  Aligned_cols=97  Identities=12%  Similarity=0.030  Sum_probs=60.4

Q ss_pred             hcccCCCeEEEEcC-C-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc----cCCC-C-CC
Q 019957          162 FKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA----DVCR-L-PF  233 (333)
Q Consensus       162 l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~----d~~~-l-p~  233 (333)
                      ....++.+||=.|+ | .|.++..+++.. +.++++++.++...+.+++.+..        -.++..    ++.+ + ..
T Consensus       154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lGa--------~~vi~~~~~~~~~~~i~~~  224 (348)
T PLN03154        154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLGF--------DEAFNYKEEPDLDAALKRY  224 (348)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcCC--------CEEEECCCcccHHHHHHHH
Confidence            34566889999997 3 588888887774 44899999888877766532211        112211    1110 0 01


Q ss_pred             CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      ..+.+|+|+-.-     .  ...+....+.|++||.+++.-
T Consensus       225 ~~~gvD~v~d~v-----G--~~~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        225 FPEGIDIYFDNV-----G--GDMLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             CCCCcEEEEECC-----C--HHHHHHHHHHhccCCEEEEEC
Confidence            123688887432     2  236788899999999998754

>PTZ00255 60S ribosomal protein L37a; Provisional

Probab=88.68  E-value=0.22  Score=36.15  Aligned_cols=31  Identities=23%  Similarity=0.701  Sum_probs=22.6

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      ..+.||.|+..-.....         .|++.|..|+..+.
T Consensus        35 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~A   65 (90)
T PTZ00255         35 AKYFCPFCGKHAVKRQA---------VGIWRCKGCKKTVA   65 (90)
T ss_pred             CCccCCCCCCCceeeee---------eEEEEcCCCCCEEe
Confidence            35689999985443322         37999999998874

>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]

Probab=88.67  E-value=0.24  Score=46.42  Aligned_cols=32  Identities=28%  Similarity=0.631  Sum_probs=25.2

Q ss_pred             eecccCCCccccccCCCCccccccccCceeeCCCCccccCcC
Q 019957           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD  101 (333)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~  101 (333)
                      .-.||.||..+...+.          +.|+|+.||..++...
T Consensus       350 ~p~Cp~Cg~~m~S~G~----------~g~rC~kCg~~~~~~~  381 (421)
T COG1571         350 NPVCPRCGGRMKSAGR----------NGFRCKKCGTRARETL  381 (421)
T ss_pred             CCCCCccCCchhhcCC----------CCcccccccccCCccc
Confidence            3479999998866654          4899999999886554

>TIGR00280 L37a ribosomal protein L37a

Probab=88.37  E-value=0.22  Score=36.26  Aligned_cols=31  Identities=26%  Similarity=0.864  Sum_probs=22.6

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      ....||.|+..-.....         .+++.|..|+..|.
T Consensus        34 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~A   64 (91)
T TIGR00280        34 AKYVCPFCGKKTVKRGS---------TGIWTCRKCGAKFA   64 (91)
T ss_pred             cCccCCCCCCCceEEEe---------eEEEEcCCCCCEEe
Confidence            35689999975433322         37999999998874

This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=88.22  E-value=1.4  Score=39.08  Aligned_cols=77  Identities=16%  Similarity=0.231  Sum_probs=43.8

Q ss_pred             HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHH
Q 019957          180 FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAE  259 (333)
Q Consensus       180 ~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~  259 (333)
                      ++..|.+.++..+|+|+|.++..++.+.+.         .-+.-...+.+.+    ..+|+|+..--+..   ...++++
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~---------g~~~~~~~~~~~~----~~~DlvvlavP~~~---~~~~l~~   64 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALEL---------GIIDEASTDIEAV----EDADLVVLAVPVSA---IEDVLEE   64 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT---------TSSSEEESHHHHG----GCCSEEEE-S-HHH---HHHHHHH
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC---------CCeeeccCCHhHh----cCCCEEEEcCCHHH---HHHHHHH
Confidence            457788888788999999999998888652         1222222222222    24699887644333   2344555


Q ss_pred             HHHhccCCcEEEE
Q 019957          260 ISRILRSGGVFVG  272 (333)
Q Consensus       260 ~~r~LkpgG~l~i  272 (333)
                      +...+++|+.+.=
T Consensus        65 ~~~~~~~~~iv~D   77 (258)
T PF02153_consen   65 IAPYLKPGAIVTD   77 (258)
T ss_dssp             HHCGS-TTSEEEE
T ss_pred             hhhhcCCCcEEEE
Confidence            5555555554433

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]

Probab=88.21  E-value=0.27  Score=41.91  Aligned_cols=90  Identities=13%  Similarity=0.088  Sum_probs=65.2

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-  232 (333)
                      +...+.+++.+.++.+.+|.--|.|..+..+.++.+...++++|.+|-+.+.|+....+.-   .+.+.-+.+.+..++ 
T Consensus        31 m~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el~---~~~l~a~Lg~Fs~~~~  107 (303)
T KOG2782|consen   31 MLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDELM---HPTLKAVLGNFSYIKS  107 (303)
T ss_pred             ehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhhc---chhHHHHHhhhHHHHH
Confidence            3456677888889999999999999999999999888899999999988888876654321   223333334443332 


Q ss_pred             ------CCCCCcceEEeccc
Q 019957          233 ------FASGFVDAVHAGAA  246 (333)
Q Consensus       233 ------~~~~~fD~V~~~~v  246 (333)
                            ..+.++|-|++...
T Consensus       108 l~~~~gl~~~~vDGiLmDlG  127 (303)
T KOG2782|consen  108 LIADTGLLDVGVDGILMDLG  127 (303)
T ss_pred             HHHHhCCCcCCcceEEeecC
Confidence                  45678888887443

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=88.19  E-value=3.8  Score=37.45  Aligned_cols=132  Identities=11%  Similarity=0.143  Sum_probs=67.3

Q ss_pred             HHHhhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHH-HHHHHHHHhcCcCCCCCeEEEEc-cCCCCCCC
Q 019957          158 AQEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENML-RQCYDFIKQDNTILTSNLALVRA-DVCRLPFA  234 (333)
Q Consensus       158 ~~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~-~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~  234 (333)
                      ....+...++.+|+-+|+|. |.............+++.+|.++... +.+.+ +   +      ...+.. +..+.   
T Consensus       169 a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~-~---g------~~~~~~~~~~~~---  235 (311)
T cd05213         169 AEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE-L---G------GNAVPLDELLEL---  235 (311)
T ss_pred             HHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-c---C------CeEEeHHHHHHH---
Confidence            33333334678999999986 65444333332134899999997654 33333 1   1      122221 22111   


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhC
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC  312 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~a  312 (333)
                      -...|+|+..-.-.+.   ...+..+....+.++.+++ +...+....+....      .+....++.++|+.+.+++
T Consensus       236 l~~aDvVi~at~~~~~---~~~~~~~~~~~~~~~~~vi-DlavPrdi~~~v~~------l~~v~l~~vDdl~~~~~~n  303 (311)
T cd05213         236 LNEADVVISATGAPHY---AKIVERAMKKRSGKPRLIV-DLAVPRDIEPEVGE------LEGVRLYTIDDLEEVVEEN  303 (311)
T ss_pred             HhcCCEEEECCCCCch---HHHHHHHHhhCCCCCeEEE-EeCCCCCCchhhcc------CCCcEEEEHHHhHHHHHHh
Confidence            1357999986654443   3334444333322344444 54443222222110      1345678888888877653

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=88.14  E-value=2.7  Score=33.20  Aligned_cols=80  Identities=13%  Similarity=0.081  Sum_probs=48.5

Q ss_pred             hcccCCCeEEEEcCCc-CH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcc
Q 019957          162 FKSAQGGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD  239 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD  239 (333)
                      +....+.++|=||+|. |. ....+...+ ..+++.+..+..-.+...+.+.      ...+.++.  +.++.-....+|
T Consensus         7 ~~~l~~~~vlviGaGg~ar~v~~~L~~~g-~~~i~i~nRt~~ra~~l~~~~~------~~~~~~~~--~~~~~~~~~~~D   77 (135)
T PF01488_consen    7 FGDLKGKRVLVIGAGGAARAVAAALAALG-AKEITIVNRTPERAEALAEEFG------GVNIEAIP--LEDLEEALQEAD   77 (135)
T ss_dssp             HSTGTTSEEEEESSSHHHHHHHHHHHHTT-SSEEEEEESSHHHHHHHHHHHT------GCSEEEEE--GGGHCHHHHTES
T ss_pred             cCCcCCCEEEEECCHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHcC------ccccceee--HHHHHHHHhhCC
Confidence            3445678999999875 33 344555555 3469999998776555555441      23455543  344432234799


Q ss_pred             eEEeccccccC
Q 019957          240 AVHAGAALHCW  250 (333)
Q Consensus       240 ~V~~~~vl~h~  250 (333)
                      +|+..-...+.
T Consensus        78 ivI~aT~~~~~   88 (135)
T PF01488_consen   78 IVINATPSGMP   88 (135)
T ss_dssp             EEEE-SSTTST
T ss_pred             eEEEecCCCCc
Confidence            99987666554

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF13453 zf-TFIIB: Transcription factor zinc-finger

Probab=88.08  E-value=0.16  Score=31.23  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=21.4

Q ss_pred             cccCCCccccccCCCCccccccccCceeeCCCCccccCcC
Q 019957           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD  101 (333)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~  101 (333)
                      .||.|+..+.....     ..  .....|++|+-.+....
T Consensus         1 ~CP~C~~~l~~~~~-----~~--~~id~C~~C~G~W~d~~   33 (41)
T PF13453_consen    1 KCPRCGTELEPVRL-----GD--VEIDVCPSCGGIWFDAG   33 (41)
T ss_pred             CcCCCCcccceEEE-----CC--EEEEECCCCCeEEccHH
Confidence            59999997654332     11  13668999997775543

>PF14354 Lar_restr_allev: Restriction alleviation protein Lar

Probab=87.80  E-value=0.42  Score=32.09  Aligned_cols=35  Identities=20%  Similarity=0.480  Sum_probs=19.8

Q ss_pred             CeecccCCCccccccCCCC-ccccccccCceeeCCCCc
Q 019957           59 DLFSCPICYEPLIRKGPTG-LTLGAIYRSGFKCRKCDK   95 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~-~~~~~~~~~~~~C~~C~~   95 (333)
                      .+..||.||++-....... ......  -.+.|..||.
T Consensus         2 ~LkPCPFCG~~~~~~~~~~~~~~~~~--~~V~C~~Cga   37 (61)
T PF14354_consen    2 ELKPCPFCGSADVLIRQDEGFDYGMY--YYVECTDCGA   37 (61)
T ss_pred             CCcCCCCCCCcceEeecccCCCCCCE--EEEEcCCCCC
Confidence            5678999987544333211 111000  2567999987

>TIGR00518 alaDH alanine dehydrogenase

Probab=87.75  E-value=1.3  Score=41.65  Aligned_cols=101  Identities=17%  Similarity=0.148  Sum_probs=55.1

Q ss_pred             CCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      ++.+|+=+|+|. |..+...+... +.+|+++|.++..++.+...+.       ..+.....+...+.-.-..+|+|+..
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g-------~~v~~~~~~~~~l~~~l~~aDvVI~a  237 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFG-------GRIHTRYSNAYEIEDAVKRADLLIGA  237 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcC-------ceeEeccCCHHHHHHHHccCCEEEEc
Confidence            456799999985 66665555543 3489999999877665544321       11111111111111011368999975


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      -.+.-.+.|.-+-++..+.+|||++++-..
T Consensus       238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence            422111223222356667789998776543

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=87.65  E-value=2.8  Score=37.71  Aligned_cols=89  Identities=16%  Similarity=0.195  Sum_probs=56.0

Q ss_pred             CeEEEEcCCc--CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE-ccCCCCCCCCCCcceEEec
Q 019957          168 GLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       168 ~~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~~lp~~~~~fD~V~~~  244 (333)
                      .+|+=+|.|-  |.++..+.+.++...++|.|.+...++.+.+.          ++.... .+....  .....|+|+..
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----------gv~d~~~~~~~~~--~~~~aD~Viva   71 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----------GVIDELTVAGLAE--AAAEADLVIVA   71 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----------Ccccccccchhhh--hcccCCEEEEe
Confidence            4688888885  67888888888877889999998888777652          111111 111011  13468999876


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEE
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFV  271 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~  271 (333)
                      --+..   ...+++++...|++|..+.
T Consensus        72 vPi~~---~~~~l~~l~~~l~~g~iv~   95 (279)
T COG0287          72 VPIEA---TEEVLKELAPHLKKGAIVT   95 (279)
T ss_pred             ccHHH---HHHHHHHhcccCCCCCEEE
Confidence            44332   2455666666666665544

>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed

Probab=87.55  E-value=0.25  Score=35.92  Aligned_cols=31  Identities=26%  Similarity=0.786  Sum_probs=22.5

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      ....||.|+..-.....         .|++.|..|+..+.
T Consensus        35 a~y~CpfCgk~~vkR~a---------~GIW~C~~C~~~~A   65 (90)
T PRK03976         35 AKHVCPVCGRPKVKRVG---------TGIWECRKCGAKFA   65 (90)
T ss_pred             cCccCCCCCCCceEEEE---------EEEEEcCCCCCEEe
Confidence            35689999875543322         37999999998873

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=87.43  E-value=13  Score=33.75  Aligned_cols=97  Identities=10%  Similarity=-0.008  Sum_probs=59.8

Q ss_pred             hhcccCCCeEEEEcC--CcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc----CCC-C-C
Q 019957          161 YFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD----VCR-L-P  232 (333)
Q Consensus       161 ~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d----~~~-l-p  232 (333)
                      .....++.+||=.|.  |.|..+..+++.. +.++++++.++...+.+++.    |   . . .++..+    ... . .
T Consensus       133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~l----G---a-~-~vi~~~~~~~~~~~~~~  202 (325)
T TIGR02825       133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKL----G---F-D-VAFNYKTVKSLEETLKK  202 (325)
T ss_pred             HhCCCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc----C---C-C-EEEeccccccHHHHHHH
Confidence            344566789998884  4578887787764 44899999888877777541    1   1 1 111111    111 0 0


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      ...+.+|+|+-.-     .  ...+....+.|+++|+++...
T Consensus       203 ~~~~gvdvv~d~~-----G--~~~~~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       203 ASPDGYDCYFDNV-----G--GEFSNTVIGQMKKFGRIAICG  237 (325)
T ss_pred             hCCCCeEEEEECC-----C--HHHHHHHHHHhCcCcEEEEec
Confidence            1124688887432     2  234678889999999998754

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.39  E-value=13  Score=31.94  Aligned_cols=103  Identities=19%  Similarity=0.182  Sum_probs=60.1

Q ss_pred             CCeEEEEcCCcC--H-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CC----
Q 019957          167 GGLLVDVSCGSG--L-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA----  234 (333)
Q Consensus       167 ~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----  234 (333)
                      +.+||-.|++.|  . +...+.+.+.  +|++++.++..+....+....     ..++.++.+|+.+..     ++    
T Consensus         5 ~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~   77 (238)
T PRK05786          5 GKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNENKLKRMKKTLSK-----YGNIHYVVGDVSSTESARNVIEKAAK   77 (238)
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh-----cCCeEEEECCCCCHHHHHHHHHHHHH
Confidence            568999997543  2 3344445554  899999988766655443333     235788888887532     00    


Q ss_pred             -CCCcceEEeccccccC-----------------CChHHHHHHHHHhccCCcEEEEEEec
Q 019957          235 -SGFVDAVHAGAALHCW-----------------PSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       235 -~~~fD~V~~~~vl~h~-----------------~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                       -+.+|.++........                 .-+..+++.+...++++|.+++....
T Consensus        78 ~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~  137 (238)
T PRK05786         78 VLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSM  137 (238)
T ss_pred             HhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecc
Confidence             1346877765432110                 01123355666677788887776643

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=87.29  E-value=1  Score=42.37  Aligned_cols=63  Identities=10%  Similarity=0.086  Sum_probs=52.3

Q ss_pred             CCCeEEEEccCCCCC--CCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCC
Q 019957          218 TSNLALVRADVCRLP--FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTS  280 (333)
Q Consensus       218 ~~~i~~~~~d~~~lp--~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~  280 (333)
                      ..++.++++++.+.-  .+++++|.++.+..++++++.  .+.++++.+.++|||++++-+......
T Consensus       274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~~  340 (380)
T PF11899_consen  274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPPW  340 (380)
T ss_pred             CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCCC
Confidence            578999999997642  347899999999999998765  478999999999999999988766533

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK11524 putative methyltransferase; Provisional

Probab=87.14  E-value=0.53  Score=42.45  Aligned_cols=55  Identities=18%  Similarity=0.254  Sum_probs=37.0

Q ss_pred             CeEEEEccCCCC--CCCCCCcceEEeccccc---c-------C------CChHHHHHHHHHhccCCcEEEEEE
Q 019957          220 NLALVRADVCRL--PFASGFVDAVHAGAALH---C-------W------PSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       220 ~i~~~~~d~~~l--p~~~~~fD~V~~~~vl~---h-------~------~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      ...++++|..+.  .+++++||+|++.=-..   .       .      .-....+.++.++|||||.+++..
T Consensus         8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~   80 (284)
T PRK11524          8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN   80 (284)
T ss_pred             CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            446777887663  35577899999842110   0       0      011468899999999999999853

>PLN00203 glutamyl-tRNA reductase

Probab=87.08  E-value=4.6  Score=39.71  Aligned_cols=116  Identities=10%  Similarity=0.112  Sum_probs=57.9

Q ss_pred             HHHHHHhhcc--cCCCeEEEEcCCc-CHH-HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          155 FKMAQEYFKS--AQGGLLVDVSCGS-GLF-SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       155 ~~~~~~~l~~--~~~~~vLDiGcG~-G~~-~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      ++.....++.  ..+.+|+=||+|. |.. +..+...+ ..+++.++.+....+...+.+.        +......++.+
T Consensus       252 v~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G-~~~V~V~nRs~era~~La~~~~--------g~~i~~~~~~d  322 (519)
T PLN00203        252 VELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKG-CTKMVVVNRSEERVAALREEFP--------DVEIIYKPLDE  322 (519)
T ss_pred             HHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHhC--------CCceEeecHhh
Confidence            3444444442  3467899999975 443 33444444 3479999999876655544321        11121222222


Q ss_pred             CCCCCCCcceEEeccccccCCChHHHHHHHHHhccC-CcEEEEEEecccC
Q 019957          231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRS-GGVFVGTTFLRYT  279 (333)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkp-gG~l~i~~~~~~~  279 (333)
                      +.-.-...|+|++.-.-.+---....++++...-+. +..+++.+...+.
T Consensus       323 l~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR  372 (519)
T PLN00203        323 MLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPR  372 (519)
T ss_pred             HHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence            221124689998754333211123334444322111 3346676766553

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=86.96  E-value=0.54  Score=25.19  Aligned_cols=24  Identities=25%  Similarity=0.708  Sum_probs=14.7

Q ss_pred             ccCCCccccccCCCCccccccccCceeeCCCCc
Q 019957           63 CPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK   95 (333)
Q Consensus        63 CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~   95 (333)
                      |-.|+..+.-...         ...+.|++||.
T Consensus         1 C~sC~~~i~~r~~---------~v~f~CPnCG~   24 (24)
T PF07754_consen    1 CTSCGRPIAPREQ---------AVPFPCPNCGF   24 (24)
T ss_pred             CccCCCcccCccc---------CceEeCCCCCC
Confidence            5567776654332         13688888873

It is likely to bind zinc via its four well-conserved cysteine residues.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=86.93  E-value=0.51  Score=40.68  Aligned_cols=41  Identities=17%  Similarity=0.472  Sum_probs=22.8

Q ss_pred             eecccCCCccccccC----------------CCCccccccccCceeeCCCCccccCc
Q 019957           60 LFSCPICYEPLIRKG----------------PTGLTLGAIYRSGFKCRKCDKTYSSK  100 (333)
Q Consensus        60 ~l~CP~C~~~l~~~~----------------~~~~~~~~~~~~~~~C~~C~~~~~~~  100 (333)
                      -+.||+|++.+....                +.....+-+......|++||..+...
T Consensus         5 ~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    5 KITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             ceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            468999999542210                00111222223466899998776444

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=86.79  E-value=8.8  Score=35.31  Aligned_cols=97  Identities=12%  Similarity=0.105  Sum_probs=57.5

Q ss_pred             ccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC---C--CCCCCC
Q 019957          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---L--PFASGF  237 (333)
Q Consensus       164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~---l--p~~~~~  237 (333)
                      ..++.+||=.|+|. |.++..+++......+++++.++..++.+++.    |     --.++..+-..   +  ......
T Consensus       158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----G-----a~~~i~~~~~~~~~~~~~~~~~~  228 (347)
T PRK10309        158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----G-----AMQTFNSREMSAPQIQSVLRELR  228 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C-----CceEecCcccCHHHHHHHhcCCC
Confidence            34677898889876 66777777764222478999998887776542    1     01111111000   0  011235


Q ss_pred             cc-eEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          238 VD-AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       238 fD-~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      +| +|+-     .+.. ...+.+..+.|++||.+++...
T Consensus       229 ~d~~v~d-----~~G~-~~~~~~~~~~l~~~G~iv~~G~  261 (347)
T PRK10309        229 FDQLILE-----TAGV-PQTVELAIEIAGPRAQLALVGT  261 (347)
T ss_pred             CCeEEEE-----CCCC-HHHHHHHHHHhhcCCEEEEEcc
Confidence            77 5542     2222 3467888899999999988753

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=86.74  E-value=11  Score=34.14  Aligned_cols=97  Identities=13%  Similarity=0.057  Sum_probs=60.1

Q ss_pred             hhcccCCCeEEEEcC--CcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-----CC
Q 019957          161 YFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PF  233 (333)
Q Consensus       161 ~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~  233 (333)
                      .....++.+||=.|.  |.|..+..+++.. +.++++++.++...+.+++.    |   .  -.++...-.++     ..
T Consensus       138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~~----G---a--~~vi~~~~~~~~~~v~~~  207 (329)
T cd08294         138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKEL----G---F--DAVFNYKTVSLEEALKEA  207 (329)
T ss_pred             hcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc----C---C--CEEEeCCCccHHHHHHHH
Confidence            344556788988884  4577777777774 45899999888877777652    1   1  11221111111     01


Q ss_pred             CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      ..+.+|+|+-.-.       ...+....+.|+++|.++...
T Consensus       208 ~~~gvd~vld~~g-------~~~~~~~~~~l~~~G~iv~~g  241 (329)
T cd08294         208 APDGIDCYFDNVG-------GEFSSTVLSHMNDFGRVAVCG  241 (329)
T ss_pred             CCCCcEEEEECCC-------HHHHHHHHHhhccCCEEEEEc
Confidence            1246888874321       245788899999999998653

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7

Probab=86.66  E-value=0.38  Score=31.59  Aligned_cols=31  Identities=19%  Similarity=0.415  Sum_probs=25.0

Q ss_pred             ccCeecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      ..+.+.|-.|++.......          ..++|..||+.-
T Consensus        17 ~~miYiCgdC~~en~lk~~----------D~irCReCG~RI   47 (62)
T KOG3507|consen   17 ATMIYICGDCGQENTLKRG----------DVIRCRECGYRI   47 (62)
T ss_pred             ccEEEEeccccccccccCC----------CcEehhhcchHH
Confidence            4678899999998866554          489999999864

0 [Transcription]

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=86.65  E-value=0.39  Score=31.77  Aligned_cols=34  Identities=26%  Similarity=0.504  Sum_probs=18.0

Q ss_pred             cCeecccCCCccccccCCCCccccccccCceeeCCCCc
Q 019957           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK   95 (333)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~   95 (333)
                      ...|.||.||..++..=..=    .-....+.|++||.
T Consensus        23 ~~~F~CPnCG~~~I~RC~~C----Rk~~~~Y~CP~CGF   56 (59)
T PRK14890         23 AVKFLCPNCGEVIIYRCEKC----RKQSNPYTCPKCGF   56 (59)
T ss_pred             cCEeeCCCCCCeeEeechhH----HhcCCceECCCCCC
Confidence            35678888887632211100    00124677888875

>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]

Probab=86.60  E-value=0.36  Score=38.46  Aligned_cols=43  Identities=16%  Similarity=0.394  Sum_probs=25.2

Q ss_pred             ecccCCCccccccCCCCc-cccccccCceeeCCCCccccCcCCc
Q 019957           61 FSCPICYEPLIRKGPTGL-TLGAIYRSGFKCRKCDKTYSSKDNY  103 (333)
Q Consensus        61 l~CP~C~~~l~~~~~~~~-~~~~~~~~~~~C~~C~~~~~~~~g~  103 (333)
                      +.||.|++.-....++.. ..+......-.|.+||+.|..-+-+
T Consensus         1 M~CPfC~~~~tkViDSR~~edg~aIRRRReC~~C~~RFTTfE~~   44 (156)
T COG1327           1 MKCPFCGHEDTKVIDSRPAEEGNAIRRRRECLECGERFTTFERA   44 (156)
T ss_pred             CCCCCCCCCCCeeeecccccccchhhhhhcccccccccchhhee
Confidence            579999996554433211 1111222245699999999654433

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=86.53  E-value=6.1  Score=37.09  Aligned_cols=94  Identities=17%  Similarity=0.141  Sum_probs=54.2

Q ss_pred             cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHH-HHHHHHHHHhcCcCCCCCeE-EEEc-cCCCCCCCCCCcce
Q 019957          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENM-LRQCYDFIKQDNTILTSNLA-LVRA-DVCRLPFASGFVDA  240 (333)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~-~~~a~~~~~~~~~~~~~~i~-~~~~-d~~~lp~~~~~fD~  240 (333)
                      .++.+||-.|+|. |.++..+++.. +.++++++.+++. .+.+++    .|      .+ ++.. +...+.-..+.+|+
T Consensus       177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~----lG------a~~~i~~~~~~~v~~~~~~~D~  245 (375)
T PLN02178        177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDR----LG------ADSFLVTTDSQKMKEAVGTMDF  245 (375)
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHh----CC------CcEEEcCcCHHHHHHhhCCCcE
Confidence            3577888888875 77777777764 3478999877543 344432    12      11 1110 10011000124788


Q ss_pred             EEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      |+-.-     .. ...+....+.+++||.++....
T Consensus       246 vid~~-----G~-~~~~~~~~~~l~~~G~iv~vG~  274 (375)
T PLN02178        246 IIDTV-----SA-EHALLPLFSLLKVSGKLVALGL  274 (375)
T ss_pred             EEECC-----Cc-HHHHHHHHHhhcCCCEEEEEcc
Confidence            77532     22 2357788899999999987653

>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines

Probab=86.52  E-value=0.21  Score=35.83  Aligned_cols=41  Identities=20%  Similarity=0.387  Sum_probs=17.2

Q ss_pred             ccCeecccCCCccccccCCCCccccccccCceeeCCCCccccCc
Q 019957           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (333)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  100 (333)
                      ....|.||.|++.-.....-   ......+.+.|..||..|...
T Consensus        19 l~~~F~CPfC~~~~sV~v~i---dkk~~~~~~~C~~Cg~~~~~~   59 (81)
T PF05129_consen   19 LPKVFDCPFCNHEKSVSVKI---DKKEGIGILSCRVCGESFQTK   59 (81)
T ss_dssp             -SS----TTT--SS-EEEEE---ETTTTEEEEEESSS--EEEEE
T ss_pred             CCceEcCCcCCCCCeEEEEE---EccCCEEEEEecCCCCeEEEc
Confidence            34789999999642221100   001223689999999888544

; PDB: 1WII_A.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=86.25  E-value=12  Score=33.93  Aligned_cols=97  Identities=19%  Similarity=0.132  Sum_probs=58.9

Q ss_pred             hcccCCCeEEEEcCC-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-CCCCCcc
Q 019957          162 FKSAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVD  239 (333)
Q Consensus       162 l~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD  239 (333)
                      ....++.+||-+|+| .|..+..+++.. +.++++++.++...+.+++. ..       . .++...-.... ...+.+|
T Consensus       158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~-g~-------~-~~~~~~~~~~~~~~~~~~d  227 (330)
T cd08245         158 AGPRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKL-GA-------D-EVVDSGAELDEQAAAGGAD  227 (330)
T ss_pred             hCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHh-CC-------c-EEeccCCcchHHhccCCCC
Confidence            344567789889987 577666666663 34899999998887776442 10       1 11111100000 0124588


Q ss_pred             eEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      +++....     . ...+.++.+.|+++|.++...
T Consensus       228 ~vi~~~~-----~-~~~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         228 VILVTVV-----S-GAAAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             EEEECCC-----c-HHHHHHHHHhcccCCEEEEEC
Confidence            8875421     1 235788889999999988765

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PRK14892 putative transcription elongation factor Elf1; Provisional

Probab=86.20  E-value=0.63  Score=34.68  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=22.5

Q ss_pred             cCeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      ..++.||.|++....... ..     ..+...|++||..+.
T Consensus        19 pt~f~CP~Cge~~v~v~~-~k-----~~~h~~C~~CG~y~~   53 (99)
T PRK14892         19 PKIFECPRCGKVSISVKI-KK-----NIAIITCGNCGLYTE   53 (99)
T ss_pred             CcEeECCCCCCeEeeeec-CC-----CcceEECCCCCCccC
Confidence            468999999963221111 11     135889999998773

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=86.18  E-value=9.2  Score=35.20  Aligned_cols=103  Identities=17%  Similarity=0.172  Sum_probs=66.2

Q ss_pred             HHhhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC-CC-----
Q 019957          159 QEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-RL-----  231 (333)
Q Consensus       159 ~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~-~l-----  231 (333)
                      .+-.+..++.+|.-+|||. |.....-++......++++|+++.-++.|++         ..-.+++...-. ++     
T Consensus       178 ~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~---------fGAT~~vn~~~~~~vv~~i~  248 (366)
T COG1062         178 VNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK---------FGATHFVNPKEVDDVVEAIV  248 (366)
T ss_pred             hhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh---------cCCceeecchhhhhHHHHHH
Confidence            3345567889999999986 7666666665446699999999999999987         233344433111 00     


Q ss_pred             CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ...++..|.++     +-.-+.. .++.....++++|..++.-..
T Consensus       249 ~~T~gG~d~~~-----e~~G~~~-~~~~al~~~~~~G~~v~iGv~  287 (366)
T COG1062         249 ELTDGGADYAF-----ECVGNVE-VMRQALEATHRGGTSVIIGVA  287 (366)
T ss_pred             HhcCCCCCEEE-----EccCCHH-HHHHHHHHHhcCCeEEEEecC
Confidence            12233455553     3333333 688888888889998876543

>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]

Probab=86.11  E-value=0.54  Score=29.79  Aligned_cols=30  Identities=23%  Similarity=0.453  Sum_probs=19.4

Q ss_pred             cCeecccCCCcc-ccccCCCCccccccccCceeeCCCCccc
Q 019957           58 GDLFSCPICYEP-LIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        58 ~~~l~CP~C~~~-l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      ...--||.||.. +.....          ..+.|..||...
T Consensus        17 rk~~~CPrCG~gvfmA~H~----------dR~~CGkCgyTe   47 (51)
T COG1998          17 RKNRFCPRCGPGVFMADHK----------DRWACGKCGYTE   47 (51)
T ss_pred             EccccCCCCCCcchhhhcC----------ceeEeccccceE
Confidence            344469999963 322222          389999998654

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=85.98  E-value=4.2  Score=31.06  Aligned_cols=89  Identities=19%  Similarity=0.249  Sum_probs=58.9

Q ss_pred             CCeEEEEcCCcC-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC-CCCcceEEec
Q 019957          167 GGLLVDVSCGSG-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAG  244 (333)
Q Consensus       167 ~~~vLDiGcG~G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~  244 (333)
                      .++|.|||-|-= ..+..|++.|.  .++++|+++.   .+           ..++.++..|+.+.-.. =...|+|.+.
T Consensus        14 ~gkVvEVGiG~~~~VA~~L~e~g~--dv~atDI~~~---~a-----------~~g~~~v~DDitnP~~~iY~~A~lIYSi   77 (129)
T COG1255          14 RGKVVEVGIGFFLDVAKRLAERGF--DVLATDINEK---TA-----------PEGLRFVVDDITNPNISIYEGADLIYSI   77 (129)
T ss_pred             CCcEEEEccchHHHHHHHHHHcCC--cEEEEecccc---cC-----------cccceEEEccCCCccHHHhhCccceeec
Confidence            459999988764 35667777765  9999999886   11           34688999999874321 1346777764


Q ss_pred             cccccCCChHHHHHHHHHhccC-CcEEEEEEecc
Q 019957          245 AALHCWPSPSNAVAEISRILRS-GGVFVGTTFLR  277 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~Lkp-gG~l~i~~~~~  277 (333)
                      .      -|..+.+.+.++-+. |..+++.....
T Consensus        78 R------pppEl~~~ildva~aVga~l~I~pL~G  105 (129)
T COG1255          78 R------PPPELQSAILDVAKAVGAPLYIKPLTG  105 (129)
T ss_pred             C------CCHHHHHHHHHHHHhhCCCEEEEecCC
Confidence            3      355666666666643 55677665444

>PLN02827 Alcohol dehydrogenase-like

Probab=85.98  E-value=9.5  Score=35.79  Aligned_cols=97  Identities=15%  Similarity=0.200  Sum_probs=57.9

Q ss_pred             cccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc-----cCCC-C-CCC
Q 019957          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-----DVCR-L-PFA  234 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-----d~~~-l-p~~  234 (333)
                      ...++.+||-+|+|. |.++..+++......++++|.++...+.+++.    |   .  -.++..     +... + ...
T Consensus       190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----G---a--~~~i~~~~~~~~~~~~v~~~~  260 (378)
T PLN02827        190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----G---V--TDFINPNDLSEPIQQVIKRMT  260 (378)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C---C--cEEEcccccchHHHHHHHHHh
Confidence            345678999999875 67777777664233688999988877777542    1   1  111111     1100 0 011


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCC-cEEEEEE
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTT  274 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~  274 (333)
                      .+.+|+|+-.-     ..+ ..+....+.+++| |++++.-
T Consensus       261 ~~g~d~vid~~-----G~~-~~~~~~l~~l~~g~G~iv~~G  295 (378)
T PLN02827        261 GGGADYSFECV-----GDT-GIATTALQSCSDGWGLTVTLG  295 (378)
T ss_pred             CCCCCEEEECC-----CCh-HHHHHHHHhhccCCCEEEEEC
Confidence            22588886432     222 3477788889998 9997644

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=85.96  E-value=11  Score=33.89  Aligned_cols=96  Identities=17%  Similarity=0.245  Sum_probs=54.2

Q ss_pred             CeEEEEcCCc-C-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc----------CcCC-------CCCeEEEEccC
Q 019957          168 GLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD----------NTIL-------TSNLALVRADV  228 (333)
Q Consensus       168 ~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~----------~~~~-------~~~i~~~~~d~  228 (333)
                      .+|.=||+|. | .++..++..+.  +|+.+|.++..++.+++.+...          +...       ..++.+ ..|.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~   80 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSY   80 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCH
Confidence            3688889986 4 45566666665  8999999999988776543321          1000       001111 1122


Q ss_pred             CCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEE
Q 019957          229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV  271 (333)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~  271 (333)
                      ..    -...|+|+..- .+....-..+++++.+.++++..++
T Consensus        81 ~~----~~~aDlVieav-~e~~~~k~~~~~~l~~~~~~~~il~  118 (291)
T PRK06035         81 ES----LSDADFIVEAV-PEKLDLKRKVFAELERNVSPETIIA  118 (291)
T ss_pred             HH----hCCCCEEEEcC-cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence            11    12467776542 1221112567788888888877654

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=85.82  E-value=15  Score=34.79  Aligned_cols=103  Identities=17%  Similarity=0.183  Sum_probs=60.7

Q ss_pred             ccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc----cCCC-CC--CCC
Q 019957          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA----DVCR-LP--FAS  235 (333)
Q Consensus       164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~----d~~~-lp--~~~  235 (333)
                      ..++.+||=.|+|. |.++..+++......++.+|.++..++.+++.    |      +..+..    ++.+ +.  ...
T Consensus       183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----G------a~~v~~~~~~~~~~~v~~~~~~  252 (393)
T TIGR02819       183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----G------CETVDLSKDATLPEQIEQILGE  252 (393)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----C------CeEEecCCcccHHHHHHHHcCC
Confidence            45577877788875 77777777664233466778888888777762    1      122211    1100 10  112


Q ss_pred             CCcceEEecccccc--------CCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          236 GFVDAVHAGAALHC--------WPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       236 ~~fD~V~~~~vl~h--------~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ..+|+|+-.-.-..        -.++...+++..+++++||.+++.-..
T Consensus       253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~  301 (393)
T TIGR02819       253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY  301 (393)
T ss_pred             CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence            35888875332110        012235789999999999999886543

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>smart00531 TFIIE Transcription initiation factor IIE

Probab=85.62  E-value=0.36  Score=38.92  Aligned_cols=41  Identities=20%  Similarity=0.444  Sum_probs=25.5

Q ss_pred             cccccCeecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           54 LELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        54 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      .......+.||.|+...........  .. ..+.+.|+.||..-
T Consensus        93 ~e~~~~~Y~Cp~C~~~y~~~ea~~~--~d-~~~~f~Cp~Cg~~l  133 (147)
T smart00531       93 DETNNAYYKCPNCQSKYTFLEANQL--LD-MDGTFTCPRCGEEL  133 (147)
T ss_pred             cccCCcEEECcCCCCEeeHHHHHHh--cC-CCCcEECCCCCCEE
Confidence            3445678999999986544322111  11 14569999999753

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=85.60  E-value=15  Score=34.16  Aligned_cols=96  Identities=15%  Similarity=0.148  Sum_probs=54.4

Q ss_pred             cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE-ccCCCCCCCCCCcceEE
Q 019957          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRLPFASGFVDAVH  242 (333)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~~lp~~~~~fD~V~  242 (333)
                      .++.+||-+|+|. |.++..+++.. +.++++++.+++....+.+.+   |   . . .++. .+...+.-....+|+|+
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~~~---G---a-~-~~i~~~~~~~~~~~~~~~D~vi  249 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALEHL---G---A-D-DYLVSSDAAEMQEAADSLDYII  249 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhc---C---C-c-EEecCCChHHHHHhcCCCcEEE
Confidence            4577888888765 77777777764 347888887776554443322   1   1 1 1111 11011100112478776


Q ss_pred             eccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      -.     +.. ...+..+.+.|++||+++....
T Consensus       250 d~-----~g~-~~~~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        250 DT-----VPV-FHPLEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             EC-----CCc-hHHHHHHHHHhccCCEEEEECC
Confidence            43     221 2357788899999999887653

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=85.56  E-value=13  Score=27.91  Aligned_cols=86  Identities=16%  Similarity=0.102  Sum_probs=52.1

Q ss_pred             CCcCHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC----CCCCCcceEEeccccc
Q 019957          175 CGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDAVHAGAALH  248 (333)
Q Consensus       175 cG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~V~~~~vl~  248 (333)
                      ||.|.++..+.+..  ...+++.+|.++...+.+++.          .+.++.+|..+..    ..-.+.|.|++..-  
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~--   71 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----------GVEVIYGDATDPEVLERAGIEKADAVVILTD--   71 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----------TSEEEES-TTSHHHHHHTTGGCESEEEEESS--
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----------ccccccccchhhhHHhhcCccccCEEEEccC--
Confidence            45555555554431  123899999999988877752          4779999997742    22346777776432  


Q ss_pred             cCCChH--HHHHHHHHhccCCcEEEEEEe
Q 019957          249 CWPSPS--NAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       249 h~~d~~--~~l~~~~r~LkpgG~l~i~~~  275 (333)
                         +..  ..+....+-+.|...++....
T Consensus        72 ---~d~~n~~~~~~~r~~~~~~~ii~~~~   97 (116)
T PF02254_consen   72 ---DDEENLLIALLARELNPDIRIIARVN   97 (116)
T ss_dssp             ---SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred             ---CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence               332  234445566677777777653

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=85.43  E-value=2.1  Score=39.94  Aligned_cols=122  Identities=10%  Similarity=0.055  Sum_probs=80.4

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH-------HhcCcCCCCCeEEEEcc
Q 019957          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI-------KQDNTILTSNLALVRAD  227 (333)
Q Consensus       155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-------~~~~~~~~~~i~~~~~d  227 (333)
                      +..+.+.++..++....|+|.|.|.....++..+....-+|+++.......+..+.       +-.|- ....+..+.++
T Consensus       181 l~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk-~~~~~~~i~gs  259 (419)
T KOG3924|consen  181 LRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK-KPNKIETIHGS  259 (419)
T ss_pred             HHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCC-CcCceeecccc
Confidence            34555666777888999999999999998888765556788887654333333221       11221 13356777787


Q ss_pred             CCCCCC---CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957          228 VCRLPF---ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       228 ~~~lp~---~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      +....+   -....++|+++.+... ++...-+.++..-+++|-+++-..+...
T Consensus       260 f~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~~L~~  312 (419)
T KOG3924|consen  260 FLDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSKPLVP  312 (419)
T ss_pred             cCCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEeccccccc
Confidence            765321   2346788888776543 3333446688889999999988776554

>TIGR00244 transcriptional regulator NrdR

Probab=85.32  E-value=0.51  Score=37.62  Aligned_cols=43  Identities=21%  Similarity=0.464  Sum_probs=25.3

Q ss_pred             ecccCCCccccccCCCCc-cccccccCceeeCCCCccccCcCCc
Q 019957           61 FSCPICYEPLIRKGPTGL-TLGAIYRSGFKCRKCDKTYSSKDNY  103 (333)
Q Consensus        61 l~CP~C~~~l~~~~~~~~-~~~~~~~~~~~C~~C~~~~~~~~g~  103 (333)
                      +.||-|++.-....++.. ..+......-.|.+||..|...+-+
T Consensus         1 M~CP~C~~~dtkViDSR~~~dg~~IRRRReC~~C~~RFTTyErv   44 (147)
T TIGR00244         1 MHCPFCQHHNTRVLDSRLVEDGQSIRRRRECLECHERFTTFERA   44 (147)
T ss_pred             CCCCCCCCCCCEeeeccccCCCCeeeecccCCccCCccceeeec
Confidence            579999996544433211 1121222244699999999655443

Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.

>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria

Probab=85.27  E-value=8.9  Score=29.84  Aligned_cols=69  Identities=17%  Similarity=0.059  Sum_probs=52.7

Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      ++-.|+|+.++--+- .|....|-.+.+.|..+|.+++.+|...                 ...+.++.++.+....+|+
T Consensus        43 ddvvD~vllWwR~~D-gDL~D~LvDa~~~L~d~G~IWvltPK~g-----------------r~g~V~~~~I~eaA~taGL  104 (127)
T PF11253_consen   43 DDVVDVVLLWWRDDD-GDLVDALVDARTNLADDGVIWVLTPKAG-----------------RPGHVEPSDIREAAPTAGL  104 (127)
T ss_pred             cccccEEEEEEECCc-chHHHHHHHHHhhhcCCCEEEEEccCCC-----------------CCCCCCHHHHHHHHhhcCC
Confidence            457899888665332 2556778888899999999999998653                 1245688999999999999


Q ss_pred             cEEEEEE
Q 019957          315 TNYTSKV  321 (333)
Q Consensus       315 ~~v~~~~  321 (333)
                      ...+...
T Consensus       105 ~~t~~~~  111 (127)
T PF11253_consen  105 VQTKSCA  111 (127)
T ss_pred             eeeeeec
Confidence            8877644

>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases

Probab=85.20  E-value=0.84  Score=27.18  Aligned_cols=31  Identities=19%  Similarity=0.608  Sum_probs=18.2

Q ss_pred             eecccCCCccc-cccCCCCccccccccCceeeCCCC
Q 019957           60 LFSCPICYEPL-IRKGPTGLTLGAIYRSGFKCRKCD   94 (333)
Q Consensus        60 ~l~CP~C~~~l-~~~~~~~~~~~~~~~~~~~C~~C~   94 (333)
                      .+.||.|++.. ......+.+.    ...++|..|.
T Consensus         5 ~v~CP~C~s~~~v~k~G~~~~G----~qryrC~~C~   36 (36)
T PF03811_consen    5 DVHCPRCQSTEGVKKNGKSPSG----HQRYRCKDCR   36 (36)
T ss_pred             eeeCCCCCCCCcceeCCCCCCC----CEeEecCcCC
Confidence            46799999966 3322211111    1478899884

Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=85.08  E-value=4.4  Score=35.78  Aligned_cols=87  Identities=23%  Similarity=0.292  Sum_probs=63.3

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++..-.|+|+..|.++..|.+++-  .|+++|.-+ |....-.         ...++....|-..+.......|-.+|.
T Consensus       210 ~~~M~avDLGAcPGGWTyqLVkr~m--~V~aVDng~-ma~sL~d---------tg~v~h~r~DGfk~~P~r~~idWmVCD  277 (358)
T COG2933         210 APGMWAVDLGACPGGWTYQLVKRNM--RVYAVDNGP-MAQSLMD---------TGQVTHLREDGFKFRPTRSNIDWMVCD  277 (358)
T ss_pred             cCCceeeecccCCCccchhhhhcce--EEEEeccch-hhhhhhc---------ccceeeeeccCcccccCCCCCceEEee
Confidence            4577899999999999999999865  899999644 3322222         456777777876654345678888876


Q ss_pred             cccccCCChHHHHHHHHHhccCC
Q 019957          245 AALHCWPSPSNAVAEISRILRSG  267 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~Lkpg  267 (333)
                      .|    ..|.++-..+...|..|
T Consensus       278 mV----EkP~rv~~li~~Wl~nG  296 (358)
T COG2933         278 MV----EKPARVAALIAKWLVNG  296 (358)
T ss_pred             hh----cCcHHHHHHHHHHHHcc
Confidence            55    67887777777777654

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=85.02  E-value=11  Score=34.62  Aligned_cols=97  Identities=15%  Similarity=0.212  Sum_probs=59.1

Q ss_pred             cccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-----C-CCC
Q 019957          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P-FAS  235 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p-~~~  235 (333)
                      ...++.+||-.|+|. |..+..+++......++++|.++...+.+++.    |     --.++...-..+     . ...
T Consensus       163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g-----~~~~v~~~~~~~~~~i~~~~~~  233 (351)
T cd08285         163 NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY----G-----ATDIVDYKNGDVVEQILKLTGG  233 (351)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C-----CceEecCCCCCHHHHHHHHhCC
Confidence            345677888888764 66777777764333699999988777766642    1     111221111111     0 123


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      ..+|+|+....     . ...+.++.+.|+++|+++...
T Consensus       234 ~~~d~vld~~g-----~-~~~~~~~~~~l~~~G~~v~~g  266 (351)
T cd08285         234 KGVDAVIIAGG-----G-QDTFEQALKVLKPGGTISNVN  266 (351)
T ss_pred             CCCcEEEECCC-----C-HHHHHHHHHHhhcCCEEEEec
Confidence            46898875322     1 245788999999999988654

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=84.85  E-value=19  Score=33.21  Aligned_cols=100  Identities=20%  Similarity=0.276  Sum_probs=58.1

Q ss_pred             cccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC----C-C-CC
Q 019957          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----P-F-AS  235 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p-~-~~  235 (333)
                      ...++.+||=+|+|. |..+..+++.. +.+++++|.++..++.+++. ..     ..-+.....+..++    . + ..
T Consensus       163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~-Ga-----~~~i~~~~~~~~~~~~~~~~~t~~  235 (349)
T TIGR03201       163 GLKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGF-GA-----DLTLNPKDKSAREVKKLIKAFAKA  235 (349)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHh-CC-----ceEecCccccHHHHHHHHHhhccc
Confidence            445678999999976 77777777764 34899999999888877652 11     00011001000000    0 0 11


Q ss_pred             CCcc----eEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          236 GFVD----AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       236 ~~fD----~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ..+|    +|+     +.... ...+....+.|++||++++...
T Consensus       236 ~g~d~~~d~v~-----d~~g~-~~~~~~~~~~l~~~G~iv~~G~  273 (349)
T TIGR03201       236 RGLRSTGWKIF-----ECSGS-KPGQESALSLLSHGGTLVVVGY  273 (349)
T ss_pred             CCCCCCcCEEE-----ECCCC-hHHHHHHHHHHhcCCeEEEECc
Confidence            2344    443     33222 3457778889999999988654

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PHA02998 RNA polymerase subunit; Provisional

Probab=84.46  E-value=0.58  Score=38.26  Aligned_cols=42  Identities=17%  Similarity=0.230  Sum_probs=24.3

Q ss_pred             CeecccCCCccccc-cCCCCccccccccCceeeCCCCccccCc
Q 019957           59 DLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (333)
Q Consensus        59 ~~l~CP~C~~~l~~-~~~~~~~~~~~~~~~~~C~~C~~~~~~~  100 (333)
                      ....||.|++.-.. ......+..+-....+.|.+||+.|..+
T Consensus       142 t~v~CPkCg~~~A~f~qlQTRSADEPmT~FYkC~~CG~~wkpp  184 (195)
T PHA02998        142 YNTPCPNCKSKNTTPMMIQTRAADEPPLVRHACRDCKKHFKPP  184 (195)
T ss_pred             cCCCCCCCCCCceEEEEEeeccCCCCceEEEEcCCCCCccCCc
Confidence            56789999984211 0000111222333578999999998544

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=84.21  E-value=11  Score=35.92  Aligned_cols=137  Identities=13%  Similarity=0.109  Sum_probs=71.6

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCC-cCHHH-HHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCG-SGLFS-RKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG-~G~~~-~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      ..++...+.+....+.++|=||.| .|.+. .+|...+ ...++...-+..-.....+++         +..+  ..+.+
T Consensus       164 aAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g-~~~i~IaNRT~erA~~La~~~---------~~~~--~~l~e  231 (414)
T COG0373         164 AAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKG-VKKITIANRTLERAEELAKKL---------GAEA--VALEE  231 (414)
T ss_pred             HHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHh---------CCee--ecHHH
Confidence            344555666665567899999999 67654 4555555 458888887765433333321         1112  23333


Q ss_pred             CCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHH
Q 019957          231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCT  310 (333)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~  310 (333)
                      ++-.-..+|+|++...-.|.   .---..+.+.+++.-.+++.+...+....+-..      .....+.++.+++....+
T Consensus       232 l~~~l~~~DvVissTsa~~~---ii~~~~ve~a~~~r~~~livDiavPRdie~~v~------~l~~v~l~~iDDL~~iv~  302 (414)
T COG0373         232 LLEALAEADVVISSTSAPHP---IITREMVERALKIRKRLLIVDIAVPRDVEPEVG------ELPNVFLYTIDDLEEIVE  302 (414)
T ss_pred             HHHhhhhCCEEEEecCCCcc---ccCHHHHHHHHhcccCeEEEEecCCCCCCcccc------CcCCeEEEehhhHHHHHH
Confidence            33223579999986543332   111233444444322277777766533322211      012344556666655543

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=84.15  E-value=12  Score=33.86  Aligned_cols=98  Identities=14%  Similarity=0.119  Sum_probs=59.8

Q ss_pred             hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC----CCCC
Q 019957          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFAS  235 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~  235 (333)
                      ....++.+||-+|+|. |..+..+++.. +.+ +++++.+++..+.+++.    +   . . .++..+-...    ....
T Consensus       155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~----g---~-~-~~~~~~~~~~~~~~~~~~  224 (334)
T cd08234         155 LGIKPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKL----G---A-T-ETVDPSREDPEAQKEDNP  224 (334)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHh----C---C-e-EEecCCCCCHHHHHHhcC
Confidence            3445678999998753 66666666664 334 88999888877776442    1   1 1 2222111110    1123


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      +.+|+|+....      ....+.++.+.|+++|.++....
T Consensus       225 ~~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g~  258 (334)
T cd08234         225 YGFDVVIEATG------VPKTLEQAIEYARRGGTVLVFGV  258 (334)
T ss_pred             CCCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEec
Confidence            56899985421      13467888999999999987643

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=84.07  E-value=18  Score=33.72  Aligned_cols=99  Identities=17%  Similarity=0.184  Sum_probs=59.7

Q ss_pred             hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE-cc----CCC-C-CC
Q 019957          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-AD----VCR-L-PF  233 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d----~~~-l-p~  233 (333)
                      ....++.+||=+|+|. |.++..+++.....+|+++|.++..++.+++.    |    -. .++. .+    +.. + ..
T Consensus       181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----G----a~-~~i~~~~~~~~~~~~v~~~  251 (368)
T TIGR02818       181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----G----AT-DCVNPNDYDKPIQEVIVEI  251 (368)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----C----CC-eEEcccccchhHHHHHHHH
Confidence            3445678999999875 77777777765233799999999888887652    1    11 1111 10    000 0 01


Q ss_pred             CCCCcceEEeccccccCCChHHHHHHHHHhccCC-cEEEEEEe
Q 019957          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~  275 (333)
                      ..+.+|+|+-.     +.. ...+.+..+.+++| |++++...
T Consensus       252 ~~~g~d~vid~-----~G~-~~~~~~~~~~~~~~~G~~v~~g~  288 (368)
T TIGR02818       252 TDGGVDYSFEC-----IGN-VNVMRAALECCHKGWGESIIIGV  288 (368)
T ss_pred             hCCCCCEEEEC-----CCC-HHHHHHHHHHhhcCCCeEEEEec
Confidence            12357877643     222 23577788899886 98876654

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=84.01  E-value=0.64  Score=36.57  Aligned_cols=42  Identities=19%  Similarity=0.404  Sum_probs=27.0

Q ss_pred             cCeecccCCCccccccCCCCccccccccCceeeCCCCccccCcCCc
Q 019957           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNY  103 (333)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~  103 (333)
                      .....||.|++...........  .  ...++|..|+..|....|+
T Consensus        28 ~~~~~cP~C~s~~~~k~g~~~~--~--~qRyrC~~C~~tf~~~~~~   69 (129)
T COG3677          28 ITKVNCPRCKSSNVVKIGGIRR--G--HQRYKCKSCGSTFTVETGS   69 (129)
T ss_pred             cccCcCCCCCccceeeECCccc--c--ccccccCCcCcceeeeccC
Confidence            3456899999976222111111  0  3578999999999776665

>PF14740 DUF4471: Domain of unknown function (DUF4471)

Probab=83.88  E-value=2.6  Score=37.92  Aligned_cols=67  Identities=19%  Similarity=0.304  Sum_probs=44.3

Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      .+.||+|+.+...-|+-.|.     +.++++|+|+|++.+...   ...+-.+....         -.+.+.++++++||
T Consensus       220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKf---mvdLrKEq~~~---------F~~kv~eLA~~aG~  282 (289)
T PF14740_consen  220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKF---MVDLRKEQLQE---------FVKKVKELAKAAGF  282 (289)
T ss_pred             cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchh---heeCCHHHHHH---------HHHHHHHHHHHCCC
Confidence            46799999877766665554     777899999999987421   11110111111         13578999999999


Q ss_pred             cEEE
Q 019957          315 TNYT  318 (333)
Q Consensus       315 ~~v~  318 (333)
                      +.+.
T Consensus       283 ~p~~  286 (289)
T PF14740_consen  283 KPVT  286 (289)
T ss_pred             cccc
Confidence            8754

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=83.71  E-value=20  Score=32.77  Aligned_cols=98  Identities=17%  Similarity=0.168  Sum_probs=59.7

Q ss_pred             hhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-------C
Q 019957          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-------L  231 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-------l  231 (333)
                      .....++.+||-.|+|. |..+..+++.. +.+ +++++.++...+.+++.    +   ..  .++..+-..       +
T Consensus       157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~~----g---~~--~vi~~~~~~~~~~~~~~  226 (343)
T cd05285         157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKEL----G---AT--HTVNVRTEDTPESAEKI  226 (343)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHc----C---Cc--EEeccccccchhHHHHH
Confidence            34455677888888765 67777777764 335 88998888777666542    1   11  111111111       0


Q ss_pred             --CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          232 --PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       232 --p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                        ......+|+|+-...      ....+.+..+.|+++|+++...
T Consensus       227 ~~~~~~~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g  265 (343)
T cd05285         227 AELLGGKGPDVVIECTG------AESCIQTAIYATRPGGTVVLVG  265 (343)
T ss_pred             HHHhCCCCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence              122345999986432      1235788899999999988654

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=83.60  E-value=0.65  Score=28.22  Aligned_cols=30  Identities=13%  Similarity=0.252  Sum_probs=19.8

Q ss_pred             eecccCCCccccccCCCCccccccccCceeeCCCCc
Q 019957           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK   95 (333)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~   95 (333)
                      .++|+.|+..+........      .....|+.||.
T Consensus         5 ~y~C~~Cg~~fe~~~~~~~------~~~~~CP~Cg~   34 (41)
T smart00834        5 EYRCEDCGHTFEVLQKISD------DPLATCPECGG   34 (41)
T ss_pred             EEEcCCCCCEEEEEEecCC------CCCCCCCCCCC
Confidence            5789999996644322100      24778999997

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=83.54  E-value=33  Score=31.46  Aligned_cols=103  Identities=19%  Similarity=0.172  Sum_probs=59.0

Q ss_pred             hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC-CC-C-CCCCC
Q 019957          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-RL-P-FASGF  237 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~-~l-p-~~~~~  237 (333)
                      ....++.+||=.|+|. |..+..+++......+++++.++...+.+++.    |.  ..-+.....++. .+ . ...+.
T Consensus       168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga--~~~i~~~~~~~~~~l~~~~~~~~  241 (351)
T cd08233         168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GA--TIVLDPTEVDVVAEVRKLTGGGG  241 (351)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CC--CEEECCCccCHHHHHHHHhCCCC
Confidence            3445677888888653 56666666664222789999888877777542    10  000010111110 00 0 11234


Q ss_pred             cceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      +|+|+-...      ....++.+.+.|+++|.++.....
T Consensus       242 ~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~~  274 (351)
T cd08233         242 VDVSFDCAG------VQATLDTAIDALRPRGTAVNVAIW  274 (351)
T ss_pred             CCEEEECCC------CHHHHHHHHHhccCCCEEEEEccC
Confidence            898875422      123578888999999998876543

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=83.53  E-value=17  Score=29.86  Aligned_cols=106  Identities=18%  Similarity=0.180  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhhcc--cCCCeEEEEcCCcCHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC
Q 019957          152 DEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (333)
Q Consensus       152 ~~~~~~~~~~l~~--~~~~~vLDiGcG~G~~~~~l~~-~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (333)
                      ++..+.+.+.+..  ....+|+-|||=+-+..  +.+ ..+..+++.+|++......            ..+ .|+.-|.
T Consensus         9 ~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~--l~~~~~~~~~~~Lle~D~RF~~~------------~~~-~F~fyD~   73 (162)
T PF10237_consen    9 DETAEFLARELLDGALDDTRIACLSTPSLYEA--LKKESKPRIQSFLLEYDRRFEQF------------GGD-EFVFYDY   73 (162)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHH--HHhhcCCCccEEEEeecchHHhc------------CCc-ceEECCC
Confidence            3344455444443  34578999988774433  333 3345689999998754321            122 3555555


Q ss_pred             CC---CC--CCCCCcceEEeccccccCCC-h-HHHHHHHHHhccCCcEEEEEEe
Q 019957          229 CR---LP--FASGFVDAVHAGAALHCWPS-P-SNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       229 ~~---lp--~~~~~fD~V~~~~vl~h~~d-~-~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ..   +|  + .++||+|++.=-+  +.+ - .+....++-++|+++.+++.+.
T Consensus        74 ~~p~~~~~~l-~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~Tg  124 (162)
T PF10237_consen   74 NEPEELPEEL-KGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCTG  124 (162)
T ss_pred             CChhhhhhhc-CCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEecH
Confidence            43   23  2 5799999984333  111 1 2334555556688899998874

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase

Probab=83.40  E-value=1.2  Score=26.63  Aligned_cols=30  Identities=20%  Similarity=0.255  Sum_probs=18.3

Q ss_pred             ecccCCCccccccCCCCccccccccCceeeCCCCc
Q 019957           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK   95 (333)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~   95 (333)
                      -.||.|++.-..... .    .-..+.+.|.+|+.
T Consensus         4 ~pCP~CGG~DrFr~~-d----~~g~G~~~C~~Cg~   33 (37)
T smart00778        4 GPCPNCGGSDRFRFD-D----KDGRGTWFCSVCGA   33 (37)
T ss_pred             cCCCCCCCccccccc-c----CCCCcCEEeCCCCC
Confidence            479999994322211 1    11237899999974

This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=83.38  E-value=13  Score=33.99  Aligned_cols=96  Identities=15%  Similarity=0.189  Sum_probs=57.0

Q ss_pred             ccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC------CCCCC
Q 019957          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL------PFASG  236 (333)
Q Consensus       164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l------p~~~~  236 (333)
                      ..++.+||-.|+|. |..+..+++......+++++.++...+.+++.    +     ...++...-..+      -...+
T Consensus       165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g-----~~~vi~~~~~~~~~~i~~~~~~~  235 (347)
T cd05278         165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----G-----ATDIINPKNGDIVEQILELTGGR  235 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----C-----CcEEEcCCcchHHHHHHHHcCCC
Confidence            34577888877753 66777777764223788888887766665542    1     111221111110      01235


Q ss_pred             CcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      .+|+|+....      ....+.+..+.|+++|+++...
T Consensus       236 ~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g  267 (347)
T cd05278         236 GVDCVIEAVG------FEETFEQAVKVVRPGGTIANVG  267 (347)
T ss_pred             CCcEEEEccC------CHHHHHHHHHHhhcCCEEEEEc
Confidence            6898885421      1246888899999999988654

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins

Probab=83.31  E-value=0.73  Score=31.76  Aligned_cols=29  Identities=21%  Similarity=0.460  Sum_probs=20.3

Q ss_pred             eecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      .-.||.||.......         ....+.|++||..+
T Consensus        28 Sq~C~~CG~~~~~~~---------~~r~~~C~~Cg~~~   56 (69)
T PF07282_consen   28 SQTCPRCGHRNKKRR---------SGRVFTCPNCGFEM   56 (69)
T ss_pred             ccCccCccccccccc---------ccceEEcCCCCCEE
Confidence            346999999765411         12489999999864

More information about these proteins can be found at Protein of the Month: Transposase [].

>TIGR00936 ahcY adenosylhomocysteinase

Probab=83.21  E-value=10  Score=36.06  Aligned_cols=89  Identities=10%  Similarity=0.057  Sum_probs=55.2

Q ss_pred             cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (333)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (333)
                      ..+.+|+=+|+|. |......++.. +.+|+++|.++.....+..          .+..+.  +.++.   -...|+|+.
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~----------~G~~v~--~leea---l~~aDVVIt  256 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAM----------DGFRVM--TMEEA---AKIGDIFIT  256 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHh----------cCCEeC--CHHHH---HhcCCEEEE
Confidence            4678999999997 66655555543 4589999998865444432          122222  22221   135698876


Q ss_pred             ccccccCCChHHHHH-HHHHhccCCcEEEEEEe
Q 019957          244 GAALHCWPSPSNAVA-EISRILRSGGVFVGTTF  275 (333)
Q Consensus       244 ~~vl~h~~d~~~~l~-~~~r~LkpgG~l~i~~~  275 (333)
                      ..     . ....+. +....+|+|++++....
T Consensus       257 aT-----G-~~~vI~~~~~~~mK~GailiN~G~  283 (406)
T TIGR00936       257 AT-----G-NKDVIRGEHFENMKDGAIVANIGH  283 (406)
T ss_pred             CC-----C-CHHHHHHHHHhcCCCCcEEEEECC
Confidence            32     1 234454 47889999998887653

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=83.03  E-value=25  Score=32.40  Aligned_cols=94  Identities=24%  Similarity=0.236  Sum_probs=55.7

Q ss_pred             CCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC--------C-CCC
Q 019957          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--------P-FAS  235 (333)
Q Consensus       166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--------p-~~~  235 (333)
                      ++.+||=.|+|. |..+..+++.....++++++.++.....+++    .|   ..  .++...-...        . ...
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g---~~--~vi~~~~~~~~~~~~~i~~~~~~  247 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FG---AD--ATIDIDELPDPQRRAIVRDITGG  247 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cC---CC--eEEcCcccccHHHHHHHHHHhCC
Confidence            677888888764 6666667776522389999988877665543    11   11  1111110000        0 112


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      ..+|+|+-...      ....+.+..+.|+++|+++...
T Consensus       248 ~~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g  280 (361)
T cd08231         248 RGADVVIEASG------HPAAVPEGLELLRRGGTYVLVG  280 (361)
T ss_pred             CCCcEEEECCC------ChHHHHHHHHHhccCCEEEEEc
Confidence            46898885321      1235778889999999998764

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=82.92  E-value=16  Score=32.08  Aligned_cols=96  Identities=19%  Similarity=0.183  Sum_probs=58.2

Q ss_pred             hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcc
Q 019957          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD  239 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD  239 (333)
                      ....++.+||-.|+|. |..+..+++.. +.+ +++++.++...+.+++.    |.  ...+  ...  .........+|
T Consensus        93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~----g~--~~~~--~~~--~~~~~~~~~~d  161 (277)
T cd08255          93 AEPRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEAL----GP--ADPV--AAD--TADEIGGRGAD  161 (277)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHc----CC--Cccc--ccc--chhhhcCCCCC
Confidence            3445678888888865 66666666664 335 99999988887766652    10  0011  100  00001234689


Q ss_pred             eEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      +|+....      ....+.+..+.|+++|.++...
T Consensus       162 ~vl~~~~------~~~~~~~~~~~l~~~g~~~~~g  190 (277)
T cd08255         162 VVIEASG------SPSALETALRLLRDRGRVVLVG  190 (277)
T ss_pred             EEEEccC------ChHHHHHHHHHhcCCcEEEEEe
Confidence            8875321      1235788889999999988654

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PHA02768 hypothetical protein; Provisional

Probab=82.91  E-value=0.28  Score=32.16  Aligned_cols=45  Identities=22%  Similarity=0.475  Sum_probs=25.5

Q ss_pred             eecccCCCccccccCCCCccccccccCceeeCCCCccccCcCCcee
Q 019957           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLD  105 (333)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~  105 (333)
                      -+.||.||..+.....-..... .....+.|.+|+..|.....++.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r-~H~k~~kc~~C~k~f~~~s~l~~   49 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLR-KHNTNLKLSNCKRISLRTGEYIE   49 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHH-hcCCcccCCcccceecccceeEE
Confidence            3689999996543221000000 11136799999998875554443

>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]

Probab=82.89  E-value=0.72  Score=38.25  Aligned_cols=26  Identities=38%  Similarity=0.898  Sum_probs=21.2

Q ss_pred             ecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      -.|+.|++.|....           ..+.|++||+.-
T Consensus       150 A~CsrC~~~L~~~~-----------~~l~Cp~Cg~tE  175 (188)
T COG1096         150 ARCSRCRAPLVKKG-----------NMLKCPNCGNTE  175 (188)
T ss_pred             EEccCCCcceEEcC-----------cEEECCCCCCEE
Confidence            36999999998743           389999999764

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=82.84  E-value=20  Score=33.33  Aligned_cols=99  Identities=18%  Similarity=0.210  Sum_probs=59.6

Q ss_pred             hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc-----CCC-C-CC
Q 019957          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-----VCR-L-PF  233 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d-----~~~-l-p~  233 (333)
                      ....++.+||=+|+|. |.++..+++......++++|.++..++.+++.    |    .. .++...     +.. + ..
T Consensus       182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l----G----a~-~~i~~~~~~~~~~~~v~~~  252 (368)
T cd08300         182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF----G----AT-DCVNPKDHDKPIQQVLVEM  252 (368)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C----CC-EEEcccccchHHHHHHHHH
Confidence            3445678899888765 66777777764223699999999888777542    1    11 112111     100 0 01


Q ss_pred             CCCCcceEEeccccccCCChHHHHHHHHHhccCC-cEEEEEEe
Q 019957          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~  275 (333)
                      ..+.+|+|+-.-     .. ...+....+.|+++ |++++...
T Consensus       253 ~~~g~d~vid~~-----g~-~~~~~~a~~~l~~~~G~~v~~g~  289 (368)
T cd08300         253 TDGGVDYTFECI-----GN-VKVMRAALEACHKGWGTSVIIGV  289 (368)
T ss_pred             hCCCCcEEEECC-----CC-hHHHHHHHHhhccCCCeEEEEcc
Confidence            123688887532     22 24577888899887 98887653

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454

Probab=82.67  E-value=0.49  Score=37.89  Aligned_cols=47  Identities=30%  Similarity=0.597  Sum_probs=28.0

Q ss_pred             CeecccCCCccccccCCC--CccccccccCceeeCCCCccccCcCCcee
Q 019957           59 DLFSCPICYEPLIRKGPT--GLTLGAIYRSGFKCRKCDKTYSSKDNYLD  105 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~--~~~~~~~~~~~~~C~~C~~~~~~~~g~~~  105 (333)
                      .+..||.|+.+..-....  ...++.-+.-.-.|.+||+.||..+..++
T Consensus        38 tI~~Cp~C~~~IrG~y~v~gv~~~g~~~~~PsYC~~CGkpyPWt~~~L~   86 (158)
T PF10083_consen   38 TITSCPNCSTPIRGDYHVEGVFGLGGHYEAPSYCHNCGKPYPWTENALE   86 (158)
T ss_pred             HHHHCcCCCCCCCCceecCCeeeeCCCCCCChhHHhCCCCCchHHHHHH
Confidence            466899999876332111  11111222234579999999998765443

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=82.52  E-value=11  Score=36.98  Aligned_cols=82  Identities=20%  Similarity=0.178  Sum_probs=60.8

Q ss_pred             CCCeEEEEcCCcCHHHHHHH----HhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CCCC
Q 019957          166 QGGLLVDVSCGSGLFSRKFA----KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FASG  236 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~----~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~  236 (333)
                      .+++||--| |+|.++..+.    +.+ ..+++.+|.++..+......+...-.  ...+.++.+|+.+..     +.+-
T Consensus       249 ~gK~vLVTG-agGSiGsel~~qil~~~-p~~i~l~~~~E~~~~~i~~el~~~~~--~~~~~~~igdVrD~~~~~~~~~~~  324 (588)
T COG1086         249 TGKTVLVTG-GGGSIGSELCRQILKFN-PKEIILFSRDEYKLYLIDMELREKFP--ELKLRFYIGDVRDRDRVERAMEGH  324 (588)
T ss_pred             CCCEEEEeC-CCCcHHHHHHHHHHhcC-CCEEEEecCchHHHHHHHHHHHhhCC--CcceEEEecccccHHHHHHHHhcC
Confidence            466787776 4555555544    444 45899999999988888877766321  467889999998753     4566


Q ss_pred             CcceEEeccccccCC
Q 019957          237 FVDAVHAGAALHCWP  251 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~  251 (333)
                      +.|+|+....+-|+|
T Consensus       325 kvd~VfHAAA~KHVP  339 (588)
T COG1086         325 KVDIVFHAAALKHVP  339 (588)
T ss_pred             CCceEEEhhhhccCc
Confidence            799999999999997

>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc

Probab=82.49  E-value=1.1  Score=28.16  Aligned_cols=29  Identities=31%  Similarity=0.708  Sum_probs=18.9

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCc
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK   95 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~   95 (333)
                      +-+.||.|++.-..... .       .+.++|..|++
T Consensus        17 ~g~~CP~Cg~~~~~~~~-~-------~~~~~C~~C~~   45 (46)
T PF12760_consen   17 DGFVCPHCGSTKHYRLK-T-------RGRYRCKACRK   45 (46)
T ss_pred             CCCCCCCCCCeeeEEeC-C-------CCeEECCCCCC
Confidence            34779999986221111 0       25899999986

It may be a zinc-binding beta ribbon domain that could bind DNA.

>TIGR03831 YgiT_finger YgiT-type zinc finger domain

Probab=82.47  E-value=0.77  Score=28.60  Aligned_cols=14  Identities=21%  Similarity=0.748  Sum_probs=10.5

Q ss_pred             ceeeCCCCccccCc
Q 019957           87 GFKCRKCDKTYSSK  100 (333)
Q Consensus        87 ~~~C~~C~~~~~~~  100 (333)
                      .+.|++||..+...
T Consensus        32 ~~~C~~CGE~~~~~   45 (46)
T TIGR03831        32 ALVCPQCGEEYLDA   45 (46)
T ss_pred             ccccccCCCEeeCC
Confidence            56799999887543

This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.

>KOG2691 consensus RNA polymerase II subunit 9 [Transcription]

Probab=82.47  E-value=1.1  Score=33.48  Aligned_cols=40  Identities=15%  Similarity=0.248  Sum_probs=23.6

Q ss_pred             CeecccCCCcccccc-CCCCccccccccCceeeCCCCcccc
Q 019957           59 DLFSCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~-~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      ..-.||.|++.-... ...+........-.+.|.+|+|.|.
T Consensus        72 s~~~C~~C~~~eavffQ~~~~r~d~~m~l~yvC~~C~h~wt  112 (113)
T KOG2691|consen   72 SDKHCPKCGHREAVFFQAQTRRADEAMRLFYVCCSCGHRWT  112 (113)
T ss_pred             ccccCCccCCcceEEEecccccccceEEEEEEecccccccc
Confidence            567899999842211 1112222333344678999999873

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=82.41  E-value=4.4  Score=32.52  Aligned_cols=42  Identities=12%  Similarity=0.116  Sum_probs=27.3

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF  198 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~  198 (333)
                      +.+...+... .+-|||+|=|+|..-..|.+..|+.+++.+|.
T Consensus        19 ~~a~~~v~~~-~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR   60 (160)
T PF12692_consen   19 NWAAAQVAGL-PGPVLELGLGNGRTYDHLREIFPDRRIYVFDR   60 (160)
T ss_dssp             HHHHHHTTT---S-EEEE--TTSHHHHHHHHH--SS-EEEEES
T ss_pred             HHHHHHhcCC-CCceEEeccCCCccHHHHHHhCCCCeEEEEee
Confidence            3334444433 35899999999999999999999999999996

>PRK08339 short chain dehydrogenase; Provisional

Probab=82.32  E-value=29  Score=30.52  Aligned_cols=77  Identities=21%  Similarity=0.309  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----C----
Q 019957          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F----  233 (333)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~----  233 (333)
                      .++++|-.|++.|   .++..+.+.|.  +|+.++.++..++...+.+....   ..++.++.+|+.+..     +    
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~i~~~~~~~~   81 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES---NVDVSYIVADLTKREDLERTVKELK   81 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc---CCceEEEEecCCCHHHHHHHHHHHH
Confidence            3567888887654   34556666665  89999999877766665554321   236788889987642     1    


Q ss_pred             CCCCcceEEecccc
Q 019957          234 ASGFVDAVHAGAAL  247 (333)
Q Consensus       234 ~~~~fD~V~~~~vl  247 (333)
                      .-+..|+++.+...
T Consensus        82 ~~g~iD~lv~nag~   95 (263)
T PRK08339         82 NIGEPDIFFFSTGG   95 (263)
T ss_pred             hhCCCcEEEECCCC
Confidence            11468888876543

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=81.82  E-value=20  Score=32.67  Aligned_cols=99  Identities=20%  Similarity=0.253  Sum_probs=59.2

Q ss_pred             cccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC-CCC--CCCCCCc
Q 019957          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRL--PFASGFV  238 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~l--p~~~~~f  238 (333)
                      ...++.+||-.|+|. |..+..+++.. +.+++++..++...+.+++. ..     ..-+.....++ ..+  ......+
T Consensus       156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~-g~-----~~v~~~~~~~~~~~l~~~~~~~~v  228 (337)
T cd08261         156 GVTAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFAREL-GA-----DDTINVGDEDVAARLRELTDGEGA  228 (337)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHh-CC-----CEEecCcccCHHHHHHHHhCCCCC
Confidence            345677899998764 67777777763 45899998888777766442 10     00011111111 001  0123458


Q ss_pred             ceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      |+|+....      ....+.++.+.|+++|.++...
T Consensus       229 d~vld~~g------~~~~~~~~~~~l~~~G~~i~~g  258 (337)
T cd08261         229 DVVIDATG------NPASMEEAVELVAHGGRVVLVG  258 (337)
T ss_pred             CEEEECCC------CHHHHHHHHHHHhcCCEEEEEc
Confidence            99986421      1345788899999999988654

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=81.60  E-value=0.9  Score=29.00  Aligned_cols=32  Identities=16%  Similarity=0.395  Sum_probs=22.7

Q ss_pred             ccCeecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      .+..+.|-.|+..+.....         ....+|+.||+.-
T Consensus         3 ~~~~Y~C~~Cg~~~~~~~~---------~~~irCp~Cg~rI   34 (49)
T COG1996           3 AMMEYKCARCGREVELDQE---------TRGIRCPYCGSRI   34 (49)
T ss_pred             ceEEEEhhhcCCeeehhhc---------cCceeCCCCCcEE
Confidence            3467899999998742211         2478999999864

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=81.58  E-value=22  Score=32.94  Aligned_cols=98  Identities=19%  Similarity=0.245  Sum_probs=58.5

Q ss_pred             cccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC--C----CC-CCC
Q 019957          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--C----RL-PFA  234 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~----~l-p~~  234 (333)
                      ...++.+||=+|+|. |..+..+++......|+++|.++..++.+++.    |   ..  .++...-  .    .+ ...
T Consensus       181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----g---a~--~~i~~~~~~~~~~~~~~~~~  251 (365)
T cd08277         181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----G---AT--DFINPKDSDKPVSEVIREMT  251 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C---CC--cEeccccccchHHHHHHHHh
Confidence            345678898888865 66666677765233799999998888777542    1   11  1111100  0    00 011


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCC-cEEEEEEe
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~  275 (333)
                      .+.+|+|+-..     .. ...+.+..+.|+++ |.+++...
T Consensus       252 ~~g~d~vid~~-----g~-~~~~~~~~~~l~~~~G~~v~~g~  287 (365)
T cd08277         252 GGGVDYSFECT-----GN-ADLMNEALESTKLGWGVSVVVGV  287 (365)
T ss_pred             CCCCCEEEECC-----CC-hHHHHHHHHhcccCCCEEEEEcC
Confidence            24588887432     22 24577888899885 99887654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=81.55  E-value=4  Score=34.08  Aligned_cols=95  Identities=13%  Similarity=0.153  Sum_probs=52.0

Q ss_pred             HHHHHhhcccCCC-eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--
Q 019957          156 KMAQEYFKSAQGG-LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (333)
Q Consensus       156 ~~~~~~l~~~~~~-~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--  232 (333)
                      +.+.+++...++. .|+.+|||.=.....+....+...++-+|. +++++.-++.++..+.....+..++.+|+.+..  
T Consensus        67 ~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~  145 (183)
T PF04072_consen   67 DAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWI  145 (183)
T ss_dssp             HHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHH
T ss_pred             HHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhH
Confidence            4555666544454 899999999888877877654446666664 555555555555532100123457888887521  


Q ss_pred             -------CCCCCcceEEeccccccCC
Q 019957          233 -------FASGFVDAVHAGAALHCWP  251 (333)
Q Consensus       233 -------~~~~~fD~V~~~~vl~h~~  251 (333)
                             +....--++++-+++.+++
T Consensus       146 ~~L~~~g~~~~~ptl~i~Egvl~Yl~  171 (183)
T PF04072_consen  146 DALPKAGFDPDRPTLFIAEGVLMYLS  171 (183)
T ss_dssp             HHHHHCTT-TTSEEEEEEESSGGGS-
T ss_pred             HHHHHhCCCCCCCeEEEEcchhhcCC
Confidence                   2233344666667777764

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=81.40  E-value=3.2  Score=37.99  Aligned_cols=123  Identities=18%  Similarity=0.165  Sum_probs=73.1

Q ss_pred             EEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC-CCCcceEEeccccc
Q 019957          170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGAALH  248 (333)
Q Consensus       170 vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~vl~  248 (333)
                      |+|+-||.|.+..-+...|. ..+.++|+++.+.+.-+.+.        +. .++.+|+.++... -..+|+++...-..
T Consensus         1 vidLF~G~GG~~~Gl~~aG~-~~~~a~e~~~~a~~ty~~N~--------~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq   70 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGF-KCVFASEIDKYAQKTYEANF--------GN-KVPFGDITKISPSDIPDFDILLGGFPCQ   70 (315)
T ss_pred             CEEEecCccHHHHHHHHcCC-eEEEEEeCCHHHHHHHHHhC--------CC-CCCccChhhhhhhhCCCcCEEEecCCCc
Confidence            68999999999999998874 24678999999888777753        22 3455777665421 23589887643222


Q ss_pred             c---------CCChH-HHHHHHHHhc---cCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCc
Q 019957          249 C---------WPSPS-NAVAEISRIL---RSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT  315 (333)
Q Consensus       249 h---------~~d~~-~~l~~~~r~L---kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~  315 (333)
                      .         +.|+. .++.++.+++   +|.  +++.+....     + ..        ....-....+...|+..|+.
T Consensus        71 ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~-----l-~~--------~~~~~~~~~i~~~l~~~GY~  134 (315)
T TIGR00675        71 PFSIAGKRKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKG-----L-VS--------HDKGRTFKVIIETLEELGYK  134 (315)
T ss_pred             ccchhcccCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHH-----H-Hh--------cccchHHHHHHHHHHhCCCE
Confidence            1         22443 3444444444   553  444443221     0 00        00012245778888899997


Q ss_pred             EEE
Q 019957          316 NYT  318 (333)
Q Consensus       316 ~v~  318 (333)
                      +..
T Consensus       135 v~~  137 (315)
T TIGR00675       135 VYY  137 (315)
T ss_pred             EEE
Confidence            644

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]

Probab=81.37  E-value=0.88  Score=33.32  Aligned_cols=35  Identities=26%  Similarity=0.630  Sum_probs=26.1

Q ss_pred             eecccCCCccccccCCCCccccccccCceeeCCCCccccCcC
Q 019957           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD  101 (333)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~  101 (333)
                      ++-||.||.-|.......       -..+.|+.|...|++..
T Consensus         1 m~FCP~Cgn~Live~g~~-------~~rf~C~tCpY~~~I~~   35 (105)
T KOG2906|consen    1 MLFCPTCGNMLIVESGES-------CNRFSCRTCPYVFPISR   35 (105)
T ss_pred             CcccCCCCCEEEEecCCe-------EeeEEcCCCCceeeEee
Confidence            356999999887655421       25789999999887764

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=81.30  E-value=19  Score=32.92  Aligned_cols=100  Identities=12%  Similarity=0.070  Sum_probs=60.4

Q ss_pred             hcccCCCeEEEEcC--CcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc-cCCC-C-CCCCC
Q 019957          162 FKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCR-L-PFASG  236 (333)
Q Consensus       162 l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~-l-p~~~~  236 (333)
                      ....++.+||=.|+  |.|.++..+++.. +.++++++.++...+.+++.+..     ..-+..... +..+ + ....+
T Consensus       147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~lGa-----~~vi~~~~~~~~~~~i~~~~~~  220 (338)
T cd08295         147 CKPKKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKLGF-----DDAFNYKEEPDLDAALKRYFPN  220 (338)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCC-----ceeEEcCCcccHHHHHHHhCCC
Confidence            44567889998886  3577777777764 44899999888877777653211     000111111 1110 0 01124


Q ss_pred             CcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      .+|+|+-.-     .  ...+.+..+.|+++|.++...
T Consensus       221 gvd~v~d~~-----g--~~~~~~~~~~l~~~G~iv~~G  251 (338)
T cd08295         221 GIDIYFDNV-----G--GKMLDAVLLNMNLHGRIAACG  251 (338)
T ss_pred             CcEEEEECC-----C--HHHHHHHHHHhccCcEEEEec
Confidence            688887532     2  245788899999999998654

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=81.29  E-value=19  Score=33.46  Aligned_cols=99  Identities=19%  Similarity=0.186  Sum_probs=59.0

Q ss_pred             hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC--CCC-----CC
Q 019957          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRL-----PF  233 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~l-----p~  233 (333)
                      ....++.+||=+|+|. |.++..+++.....+++++|.++..++.+++.    |     -..++...-  ..+     ..
T Consensus       183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~----G-----a~~~i~~~~~~~~~~~~v~~~  253 (369)
T cd08301         183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF----G-----VTEFVNPKDHDKPVQEVIAEM  253 (369)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C-----CceEEcccccchhHHHHHHHH
Confidence            3445688999998765 66666777765333799999999888877552    1     111221110  000     01


Q ss_pred             CCCCcceEEeccccccCCChHHHHHHHHHhccCC-cEEEEEEe
Q 019957          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~  275 (333)
                      ..+.+|+|+-.     +.. ...+....+.+++| |++++...
T Consensus       254 ~~~~~d~vid~-----~G~-~~~~~~~~~~~~~~~g~~v~~g~  290 (369)
T cd08301         254 TGGGVDYSFEC-----TGN-IDAMISAFECVHDGWGVTVLLGV  290 (369)
T ss_pred             hCCCCCEEEEC-----CCC-hHHHHHHHHHhhcCCCEEEEECc
Confidence            12357877643     222 34577778889996 99887654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4

Probab=81.29  E-value=0.79  Score=27.98  Aligned_cols=31  Identities=26%  Similarity=0.375  Sum_probs=13.8

Q ss_pred             ecccCCCccccccCCCCccccccccCceeeCCCCc
Q 019957           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDK   95 (333)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~   95 (333)
                      -.||+|++.-.......    ....+.+.|.+|+.
T Consensus         4 ~pCP~CGG~DrFri~~d----~~~~G~~~C~~C~~   34 (40)
T PF08273_consen    4 GPCPICGGKDRFRIFDD----KDGRGTWICRQCGG   34 (40)
T ss_dssp             E--TTTT-TTTEEEETT--------S-EEETTTTB
T ss_pred             CCCCCCcCccccccCcC----cccCCCEECCCCCC
Confidence            47999999532220000    11237899999943

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=81.17  E-value=6  Score=34.01  Aligned_cols=73  Identities=10%  Similarity=0.148  Sum_probs=50.2

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ..+.+....+.....-|.+||.|.|..++.+...+ ..+...+|.+...+.-.+...+..    ..+..+..+|+...
T Consensus        38 lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~-~~RL~vVE~D~RFip~LQ~L~EAa----~~~~~IHh~D~LR~  110 (326)
T KOG0821|consen   38 LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNAD-VARLLVVEKDTRFIPGLQMLSEAA----PGKLRIHHGDVLRF  110 (326)
T ss_pred             HHHHHHHhccccccceeEEecCCCCchhHHHHhcc-hhheeeeeeccccChHHHHHhhcC----CcceEEecccccee
Confidence            34555555555556789999999999999999886 447888888876665555444432    33666667776543

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=81.17  E-value=25  Score=31.73  Aligned_cols=93  Identities=16%  Similarity=0.130  Sum_probs=57.2

Q ss_pred             cccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceE
Q 019957          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (333)
                      ...++.+||=.|+|. |..+..+++.. +.++++++.+++..+.+++ +   |      +.... +.... ...+.+|+|
T Consensus       152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~-~---g------~~~~~-~~~~~-~~~~~~d~v  218 (319)
T cd08242         152 PITPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARR-L---G------VETVL-PDEAE-SEGGGFDVV  218 (319)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH-c---C------CcEEe-Ccccc-ccCCCCCEE
Confidence            345677888888654 55555555553 3479999999888877765 2   1      11111 11111 234568988


Q ss_pred             EeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      +-...      ....+..+.+.|+++|.++...
T Consensus       219 id~~g------~~~~~~~~~~~l~~~g~~v~~~  245 (319)
T cd08242         219 VEATG------SPSGLELALRLVRPRGTVVLKS  245 (319)
T ss_pred             EECCC------ChHHHHHHHHHhhcCCEEEEEc
Confidence            86421      1345778888999999998743

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PRK05978 hypothetical protein; Provisional

Probab=81.08  E-value=1  Score=36.15  Aligned_cols=33  Identities=18%  Similarity=0.487  Sum_probs=21.2

Q ss_pred             eecccCCCccccccCCCCccccccccCceeeCCCCccccCc
Q 019957           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (333)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  100 (333)
                      ..+||.||+.-....        +..-.-+|+.||..|...
T Consensus        33 ~grCP~CG~G~LF~g--------~Lkv~~~C~~CG~~~~~~   65 (148)
T PRK05978         33 RGRCPACGEGKLFRA--------FLKPVDHCAACGEDFTHH   65 (148)
T ss_pred             cCcCCCCCCCccccc--------ccccCCCccccCCccccC
Confidence            457999999543321        111245799999988544

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=81.05  E-value=32  Score=31.12  Aligned_cols=93  Identities=18%  Similarity=0.092  Sum_probs=56.5

Q ss_pred             hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcce
Q 019957          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA  240 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~  240 (333)
                      ....++.+||=.|+|. |..+..+++.. +.+++.++.+....+.+++.    |      ++... +....  ..+.+|+
T Consensus       163 ~~~~~~~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~~~~~~~~~~----g------~~~~~-~~~~~--~~~~vD~  228 (329)
T cd08298         163 AGLKPGQRLGLYGFGASAHLALQIARYQ-GAEVFAFTRSGEHQELAREL----G------ADWAG-DSDDL--PPEPLDA  228 (329)
T ss_pred             hCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHHHh----C------CcEEe-ccCcc--CCCcccE
Confidence            3445667777788764 55555555553 45899998888766666431    1      11111 11111  2346888


Q ss_pred             EEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      ++....     . ...+.++.+.|+++|.++...
T Consensus       229 vi~~~~-----~-~~~~~~~~~~l~~~G~~v~~g  256 (329)
T cd08298         229 AIIFAP-----V-GALVPAALRAVKKGGRVVLAG  256 (329)
T ss_pred             EEEcCC-----c-HHHHHHHHHHhhcCCEEEEEc
Confidence            764321     1 246889999999999999764

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=80.81  E-value=8.2  Score=35.48  Aligned_cols=100  Identities=16%  Similarity=0.136  Sum_probs=55.6

Q ss_pred             CeEEEEcCCc-C-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh-------cCcCC---CCCeEEEEccCCCCCCCC
Q 019957          168 GLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ-------DNTIL---TSNLALVRADVCRLPFAS  235 (333)
Q Consensus       168 ~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~-------~~~~~---~~~i~~~~~d~~~lp~~~  235 (333)
                      .+|-=||+|+ | .++..++..|.  +|+.+|++++.++.++..+..       .+...   ..++.+. .++++   .-
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~---av   81 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA---CV   81 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH---Hh
Confidence            5788899985 4 45566666665  999999999888776654431       11100   0111211 11111   01


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      ...|+|+-. +.|.+.--..+++++.+.++|+.+|.-.+
T Consensus        82 ~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIlaSnT  119 (321)
T PRK07066         82 ADADFIQES-APEREALKLELHERISRAAKPDAIIASST  119 (321)
T ss_pred             cCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEEEECC
Confidence            245665532 22222222467899999999988554444

>PRK08265 short chain dehydrogenase; Provisional

Probab=80.75  E-value=18  Score=31.65  Aligned_cols=71  Identities=15%  Similarity=0.157  Sum_probs=44.4

Q ss_pred             CCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CC----
Q 019957          167 GGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA----  234 (333)
Q Consensus       167 ~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----  234 (333)
                      +.++|=.|++.|   .++..+.+.|.  +|+.+|.++..++...+.+       ..++.++.+|+.+..     +.    
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~~~   76 (261)
T PRK08265          6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASL-------GERARFIATDITDDAAIERAVATVVA   76 (261)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCeeEEEEecCCCHHHHHHHHHHHHH
Confidence            568888886543   24455555565  8999999876554443322       235778888987642     11    


Q ss_pred             -CCCcceEEeccc
Q 019957          235 -SGFVDAVHAGAA  246 (333)
Q Consensus       235 -~~~fD~V~~~~v  246 (333)
                       -+..|+++.+..
T Consensus        77 ~~g~id~lv~~ag   89 (261)
T PRK08265         77 RFGRVDILVNLAC   89 (261)
T ss_pred             HhCCCCEEEECCC
Confidence             146798887654

>PRK07806 short chain dehydrogenase; Provisional

Probab=80.67  E-value=31  Score=29.67  Aligned_cols=102  Identities=18%  Similarity=0.104  Sum_probs=56.2

Q ss_pred             CCeEEEEcCCc--CH-HHHHHHHhCCCCeEEEEeCCH-HHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CC---
Q 019957          167 GGLLVDVSCGS--GL-FSRKFAKSGTYSGVVALDFSE-NMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---  234 (333)
Q Consensus       167 ~~~vLDiGcG~--G~-~~~~l~~~~~~~~v~g~D~s~-~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---  234 (333)
                      +.++|-.|+..  |. +...+.+.+.  +|++++.+. ...+.....++..    ..++.++.+|+.+..     +.   
T Consensus         6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~   79 (248)
T PRK07806          6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAA----GGRASAVGADLTDEESVAALMDTAR   79 (248)
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHHH
Confidence            56888888643  32 3344444554  788887654 2333333333332    235778888987642     00   


Q ss_pred             --CCCcceEEeccccccCC-------------ChHHHHHHHHHhccCCcEEEEEE
Q 019957          235 --SGFVDAVHAGAALHCWP-------------SPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       235 --~~~fD~V~~~~vl~h~~-------------d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                        -+..|+|+.+.......             -+..+++.+.+.++.+|.+++..
T Consensus        80 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is  134 (248)
T PRK07806         80 EEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT  134 (248)
T ss_pred             HhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence              13578877654322110             12356677777776677766654

>PRK08324 short chain dehydrogenase; Validated

Probab=80.56  E-value=19  Score=36.75  Aligned_cols=103  Identities=22%  Similarity=0.227  Sum_probs=62.6

Q ss_pred             CCCeEEEEcCCc--CH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CC---
Q 019957          166 QGGLLVDVSCGS--GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---  234 (333)
Q Consensus       166 ~~~~vLDiGcG~--G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---  234 (333)
                      .+++||=.|++.  |. +...+.+.|.  +|+.+|.++..++.+.+.+..     ..++.++.+|+.+..     +.   
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~-----~~~v~~v~~Dvtd~~~v~~~~~~~~  493 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGG-----PDRALGVACDVTDEAAVQAAFEEAA  493 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhc-----cCcEEEEEecCCCHHHHHHHHHHHH
Confidence            457889888643  32 3444555554  899999998777666554332     136778888886532     11   


Q ss_pred             --CCCcceEEeccccccCCC-------------------hHHHHHHHHHhccC---CcEEEEEEe
Q 019957          235 --SGFVDAVHAGAALHCWPS-------------------PSNAVAEISRILRS---GGVFVGTTF  275 (333)
Q Consensus       235 --~~~fD~V~~~~vl~h~~d-------------------~~~~l~~~~r~Lkp---gG~l~i~~~  275 (333)
                        -+.+|+|+.+...-....                   ...+++.+.+.+++   ||.+++...
T Consensus       494 ~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS  558 (681)
T PRK08324        494 LAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS  558 (681)
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence              236899987665332211                   22446666777766   677777553

>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]

Probab=80.56  E-value=32  Score=31.32  Aligned_cols=49  Identities=16%  Similarity=0.318  Sum_probs=34.4

Q ss_pred             HHHhhcc-cCCCeEEEEcCCcCHHHHHHHHhC--CCCeEEEEeCCHHHHHHH
Q 019957          158 AQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQC  206 (333)
Q Consensus       158 ~~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a  206 (333)
                      +..++.. .....|+.+|||.-.+...|...+  ....++=+|..+......
T Consensus        78 v~~Fl~~~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi  129 (335)
T KOG2918|consen   78 VRAFLEQTDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKI  129 (335)
T ss_pred             HHHHHHhcCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHH
Confidence            3334433 335679999999998888888876  456677788777665555

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=80.07  E-value=9.3  Score=34.72  Aligned_cols=90  Identities=17%  Similarity=0.176  Sum_probs=51.9

Q ss_pred             CeEEEEcCCc-C-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957          168 GLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (333)
Q Consensus       168 ~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (333)
                      .+|.=||+|. | .++..+.+.+...+|+++|.++..++.+++    .+.    . .....+..+.   -...|+|+..-
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~----~-~~~~~~~~~~---~~~aDvViiav   74 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGL----G-DRVTTSAAEA---VKGADLVILCV   74 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCC----C-ceecCCHHHH---hcCCCEEEECC
Confidence            4788899886 4 455566665533489999999987766654    111    1 1111122111   13578888754


Q ss_pred             ccccCCChHHHHHHHHHhccCCcEEEE
Q 019957          246 ALHCWPSPSNAVAEISRILRSGGVFVG  272 (333)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~l~i  272 (333)
                      -...   ...+++++...+++|..++.
T Consensus        75 p~~~---~~~v~~~l~~~l~~~~iv~d   98 (307)
T PRK07502         75 PVGA---SGAVAAEIAPHLKPGAIVTD   98 (307)
T ss_pred             CHHH---HHHHHHHHHhhCCCCCEEEe
Confidence            3322   23456667677788775544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	333
3dlc_A	219	Crystal Structure Of A Putative S-Adenosyl-L-Methio		8e-08
1vl5_A	260	Crystal Structure Of A Putative Methyltransferase (		3e-05
3ccf_A	279	Crystal Structure Of Putative Methyltransferase (Yp		3e-05
3l8d_A	242	Crystal Structure Of Methyltransferase From Bacillu		6e-05

>pdb|3DLC|A Chain A, Crystal Structure Of A Putative S-Adenosyl-L-Methionine-Dependent Methyltransferase (Mmp1179) From Methanococcus Maripaludis At 1.15 A Resolution Length = 219

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 10/157 (6%)
Query: 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD 227
           G  +D+  G G  S   AK   +S + ALDFS++        I   N  L   + +V+ D
Sbjct: 45  GTCIDIGSGPGALSIALAKQSDFS-IRALDFSKHXNEIALKNIADAN--LNDRIQIVQGD 101
Query: 228 VCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG-VFVGTTFLRYTSSTSLTG 286
           V  +P    + D + +  ++  W   + A  EI RIL+SGG  ++G  F       S++ 
Sbjct: 102 VHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISA 161
Query: 287 RVLR------ERILQNYNYLTEEEIEDLCTSCGLTNY 317
             +R      E   +N +    E  +++    G+++Y
Sbjct: 162 EXIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSY 198

>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331) From Bacillus Halodurans C-125 At 1.95 A Resolution Length = 260

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++DV+ G G  +  FA       VVA D +E++L+    FI+ +       +  V+ D  
Sbjct: 41  VLDVATGGGHVANAFAP--FVKKVVAFDLTEDILKVARAFIEGNGH---QQVEYVQGDAE 95
Query: 230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
           + PF       V    A H +P+P++ V+E  R+L+ GG
Sbjct: 96  QXPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGG 134

>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase (Yp_321342.1) From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution Length = 279

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           G  ++D+ CG+G  + K A+SG  + V+  D +   + +     +Q+   L  ++A  R 
Sbjct: 58  GEFILDLGCGTGQLTEKIAQSG--AEVLGTDNAATXIEKA----RQNYPHLHFDVADARN 111
Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
                P     +DAV + A LH    P  A+A I + L+SGG FV
Sbjct: 112 FRVDKP-----LDAVFSNAXLHWVKEPEAAIASIHQALKSGGRFV 151

>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus Thuringiensis Length = 242

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++DV CG G  + K +++G  +  V +D SE  ++      K        +L+ ++ D+ 
Sbjct: 57  VLDVGCGDGYGTYKLSRTGYKA--VGVDISEVXIQ------KGKERGEGPDLSFIKGDLS 108
Query: 230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
            LPF +   +A+ A  +L     P  A+ EI R+L+S G
Sbjct: 109 SLPFENEQFEAIXAINSLEWTEEPLRALNEIKRVLKSDG 147

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	333
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	4e-25
3ege_A	261	Putative methyltransferase from antibiotic biosyn	3e-24
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	2e-23
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	2e-23
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	1e-22
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	2e-22
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	6e-22
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	7e-21
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	7e-21
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	5e-20
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	9e-20
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	1e-19
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	1e-19
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	1e-19
1xxl_A	239	YCGJ protein; structural genomics, protein structu	2e-19
3i9f_A	170	Putative type 11 methyltransferase; structural gen	3e-19
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	7e-19
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	1e-18
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	1e-18
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	3e-18
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	3e-18
3f4k_A	257	Putative methyltransferase; structural genomics, P	6e-18
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	6e-18
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	7e-18
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	8e-18
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	1e-17
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	5e-17
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	8e-17
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	2e-16
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	3e-16
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	5e-16
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	8e-15
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	9e-15
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	5e-14
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	2e-13
3ocj_A	305	Putative exported protein; structural genomics, PS	4e-13
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	4e-13
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	5e-13
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	8e-13
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	1e-12
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	1e-12
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	2e-12
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	1e-11
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	4e-11
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	9e-11
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	1e-10
3cc8_A	230	Putative methyltransferase; structural genomics, j	4e-10
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	4e-10
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	5e-10
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	8e-10
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	9e-10
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	1e-09
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	2e-09
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	3e-09
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	4e-09
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	2e-08
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	2e-08
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	5e-08
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	8e-08
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	2e-07
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	3e-07
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	1e-06
2p7i_A	250	Hypothetical protein; putative methyltransferase,	1e-06
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	2e-06
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	2e-06
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	2e-06
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	3e-06
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	8e-06
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	2e-05
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	7e-05
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1im8_A	244	YECO; methyltransferase, adenosylhomocysteine, str	2e-04
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	5e-04

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 99.9 bits (249), Expect = 4e-25
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 10/160 (6%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
             G  +D+  G G  S   AK   +S + ALDFS++M       I   N  L   + +V+
Sbjct: 43  TAGTCIDIGSGPGALSIALAKQSDFS-IRALDFSKHMNEIALKNIADAN--LNDRIQIVQ 99

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG-VFVGTTFLRYTSSTSL 284
            DV  +P    + D + +  ++  W   + A  EI RIL+SGG  ++G  F       S+
Sbjct: 100 GDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSI 159

Query: 285 TGRVLR------ERILQNYNYLTEEEIEDLCTSCGLTNYT 318
           +  ++R      E   +N +    E  +++    G+++Y 
Sbjct: 160 SAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYE 199

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 98.4 bits (245), Expect = 3e-24
 Identities = 29/154 (18%), Positives = 50/154 (32%), Gaps = 13/154 (8%)

Query: 146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQ 205
                               +G ++ D+  G+G +S   A  G +  V A++ S  M +Q
Sbjct: 14  QTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLF--VYAVEPSIVMRQQ 71

Query: 206 CYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILR 265
                          +         L      VD V +  A+H +     +  E+ RI+R
Sbjct: 72  AVVH---------PQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR 122

Query: 266 SGGVFVGTTFLRYTSSTSLTG--RVLRERILQNY 297
            G + + T  +R      L      L E  L+  
Sbjct: 123 DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFL 156

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 96.1 bits (239), Expect = 2e-23
 Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 9/145 (6%)

Query: 172 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231
           DV CG G  + K +++G     V +D SE M+++     K+       +L+ ++ D+  L
Sbjct: 59  DVGCGDGYGTYKLSRTGYK--AVGVDISEVMIQKG----KERG--EGPDLSFIKGDLSSL 110

Query: 232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE 291
           PF +   +A+ A  +L     P  A+ EI R+L+S G                +   L  
Sbjct: 111 PFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYG 170

Query: 292 RILQNYNYLTEEEIEDLCTSCGLTN 316
           + +   N +   E E L    G   
Sbjct: 171 KDV-VCNTMMPWEFEQLVKEQGFKV 194

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 95.0 bits (236), Expect = 2e-23
 Identities = 33/208 (15%), Positives = 75/208 (36%), Gaps = 25/208 (12%)

Query: 145 RSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLR 204
           ++    P    +  +   +S     ++D   G  L          Y     ++ S+  L+
Sbjct: 3   KTIIRQPQLY-RFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYK-TYGIEISDLQLK 60

Query: 205 QCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISR 262
           +  +F +++N      L + + D+ +LPF    +  V++   +          A+ EI R
Sbjct: 61  KAENFSRENN----FKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKR 116

Query: 263 ILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNY-------NYLTEEEIEDLCTSCGL- 314
           +L+ GG+             +   ++     LQ         +Y++ EE +       + 
Sbjct: 117 VLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVL 176

Query: 315 ---------TNYTSKVQQSFIMFAAQKP 333
                     N   K++Q ++ + A+K 
Sbjct: 177 FKEDRVVERINDGLKIKQGYVDYIAEKF 204

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 93.3 bits (232), Expect = 1e-22
 Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 17/151 (11%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
            G  V++  G+G F+            + ++ SE M         +        + +++ 
Sbjct: 48  EGRGVEIGVGTGRFAVPLKI------KIGVEPSERMAEIA-----RKR-----GVFVLKG 91

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTS-STSLT 285
               LP      D       +     P  A+ E  RIL+ GG  +     R +       
Sbjct: 92  TAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYE 151

Query: 286 GRVLRERILQNYNYLTEEEIEDLCTSCGLTN 316
               +    +N  + + EE+ DL    G   
Sbjct: 152 KNKEKSVFYKNARFFSTEELMDLMRKAGFEE 182

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 93.9 bits (233), Expect = 2e-22
 Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 15/180 (8%)

Query: 145 RSGFPGPDEEF--KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENM 202
           R+  P    +    MA       +  + +++  G+G  +      G     +ALD    M
Sbjct: 16  RAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYR--YIALDADAAM 73

Query: 203 LRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISR 262
           L       +Q    +   + +V+AD   +P     V  V      H  P     +AE  R
Sbjct: 74  LEVF----RQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIR 129

Query: 263 ILRSGGVFVGTTFLRYTSSTSLTGRVLRE-------RILQNYNYLTEEEIEDLCTSCGLT 315
           +L+ GG  +        S         R         + +  +    +E+E+     GL 
Sbjct: 130 VLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK 189

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 92.7 bits (230), Expect = 6e-22
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 11/158 (6%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           G  +++  CG G  +   AK+   + + ++D S   L +  +  +++      N+  ++A
Sbjct: 38  GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI---KNVKFLQA 94

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG 286
           ++  LPF     D +     L    SP  A+  + ++L+ GG          +      G
Sbjct: 95  NIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEG 154

Query: 287 RVLRERILQNYNY--------LTEEEIEDLCTSCGLTN 316
           +   E                L   +I  L    G   
Sbjct: 155 KKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEK 192

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 88.3 bits (219), Expect = 7e-21
 Identities = 33/144 (22%), Positives = 51/144 (35%), Gaps = 14/144 (9%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           G  L++V  G+G + R+          V ++ SE ML                    VRA
Sbjct: 37  GESLLEVGAGTGYWLRRLPYPQ----KVGVEPSEAMLAVGRR--------RAPEATWVRA 84

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG 286
               LPF     D V     L         + E  R+LR GG  V       +   +L  
Sbjct: 85  WGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAALYR 144

Query: 287 RVLRERIL--QNYNYLTEEEIEDL 308
           R+  + +L      +L  E+++ L
Sbjct: 145 RLGEKGVLPWAQARFLAREDLKAL 168

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 89.5 bits (222), Expect = 7e-21
 Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 7/152 (4%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
              ++DV+ G G  +  FA       VVA D +E++L+    FI+ +       +  V+ 
Sbjct: 38  NEEVLDVATGGGHVANAFAPFVKK--VVAFDLTEDILKVARAFIEGNGH---QQVEYVQG 92

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST--SL 284
           D  ++PF       V    A H +P+P++ V+E  R+L+ GG  +        +      
Sbjct: 93  DAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVF 152

Query: 285 TGRVLRERILQNYNYLTEEEIEDLCTSCGLTN 316
              V +ER   ++    + +   +    G   
Sbjct: 153 YNYVEKERDYSHHRAWKKSDWLKMLEEAGFEL 184

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 86.1 bits (213), Expect = 5e-20
 Identities = 32/205 (15%), Positives = 67/205 (32%), Gaps = 24/205 (11%)

Query: 143 FNRSGFPGPDEEFKMAQEYFKSAQ---GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS 199
           F +       E F   ++  +       G +++   G+G  + K   +G    V  ++ S
Sbjct: 19  FVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRT--VYGIEPS 76

Query: 200 ENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAV 257
             M        K+    L    ++   D       +   D + +  A H       + A+
Sbjct: 77  REMRMIA----KEK---LPKEFSITEGDFLSFEVPTSI-DTIVSTYAFHHLTDDEKNVAI 128

Query: 258 AEISRILRSGGVFV--------GTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLC 309
           A+ S++L  GG  V           + +   +    G       LQ   Y     ++ + 
Sbjct: 129 AKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIF 188

Query: 310 TSCGLT-NYTSKVQQSFIMFAAQKP 333
            + G    +T      ++M A ++ 
Sbjct: 189 ENNGFHVTFTRLNHFVWVMEATKQL 213

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 85.6 bits (212), Expect = 9e-20
 Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
            G  +VD+ CG G F R   + G  S V+ LD SE ML +     +       + +   R
Sbjct: 43  GGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARA----RAAGP--DTGITYER 95

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT 285
           AD+ +L       D  ++  ALH     +     + + L  GG FV +T      + +  
Sbjct: 96  ADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARP 155

Query: 286 GRVLRERILQNY---NYLTEEEIEDLCTSCGLTNY 317
           G  +     + +    YL E   +    + G+  +
Sbjct: 156 GWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKH 190

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 85.7 bits (212), Expect = 1e-19
 Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 11/156 (7%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
               ++D+ CG G      A+ G    V+ +D SE ML +     K+  T  +  +   +
Sbjct: 44  NQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDLSERMLTEA----KRKTT--SPVVCYEQ 96

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT 285
             +  +       + V +  ALH   S  +   ++   L+S G F+ +      ++    
Sbjct: 97  KAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQ 156

Query: 286 GRVLRERILQNY----NYLTEEEIEDLCTSCGLTNY 317
                E   + +     Y  E           +  Y
Sbjct: 157 DWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKY 192

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 84.5 bits (209), Expect = 1e-19
 Identities = 22/179 (12%), Positives = 54/179 (30%), Gaps = 21/179 (11%)

Query: 139 WRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF 198
                         +   +    + +   G+++DV  G+G ++   A  G    +  L+ 
Sbjct: 16  AEALLGTVISAEDPDRVLIEP--WATGVDGVILDVGSGTGRWTGHLASLGHQ--IEGLEP 71

Query: 199 SENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL-HCWPS-PSNA 256
           +  ++       +Q +     ++      +  L  +      + A  +L H  P    +A
Sbjct: 72  ATRLVELA----RQTHP----SVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDA 123

Query: 257 VAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 315
           +  +   +  GG  +  +F    S   +   V               E+     + G  
Sbjct: 124 LVALRMAVEDGGGLL-MSFFSGPSLEPMYHPVAT------AYRWPLPELAQALETAGFQ 175

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 85.7 bits (212), Expect = 1e-19
 Identities = 47/260 (18%), Positives = 89/260 (34%), Gaps = 44/260 (16%)

Query: 61  FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKP 120
           FSCP+C++PL R+            + + C +  +   +K+ Y++L  +   +       
Sbjct: 3   FSCPLCHQPLSREK-----------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDS 51

Query: 121 ASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLF 180
           A     R  F+   + +  R                  +E        +L D+ CG G +
Sbjct: 52  AEMMQARRAFLDAGHYQPLRDAIVA-----------QLRERLDDKATAVL-DIGCGEGYY 99

Query: 181 SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 240
           +  FA +        LD S+  ++                +    A   RLPF+   +DA
Sbjct: 100 THAFADALPEITTFGLDVSKVAIKAA--------AKRYPQVTFCVASSHRLPFSDTSMDA 151

Query: 241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV-----LRERILQ 295
           +          +P     E++R+++ GG  +  T         L G +     L     +
Sbjct: 152 I------IRIYAPCK-AEELARVVKPGGWVITATPGPRHLM-ELKGLIYNEVHLHAPHAE 203

Query: 296 NYNYLTEEEIEDLCTSCGLT 315
                T ++  +LC    L 
Sbjct: 204 QLEGFTLQQSAELCYPMRLR 223

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 84.5 bits (209), Expect = 2e-19
 Identities = 25/151 (16%), Positives = 54/151 (35%), Gaps = 7/151 (4%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
              ++D+  G+G  +  F+        + +D ++ M+     F ++       N+   + 
Sbjct: 22  EHRVLDIGAGAGHTALAFSPYVQE--CIGVDATKEMVEVASSFAQEKGV---ENVRFQQG 76

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSS--TSL 284
               LPF     D +    A H +     AV E++R+L+  G F+               
Sbjct: 77  TAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEF 136

Query: 285 TGRVLRERILQNYNYLTEEEIEDLCTSCGLT 315
              + R R   +    +  E + + ++  L 
Sbjct: 137 VNHLNRLRDPSHVRESSLSEWQAMFSANQLA 167

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 82.8 bits (205), Expect = 3e-19
 Identities = 17/106 (16%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           + G++VD  CG+G + +   +    + +  +D +   L++           +      V 
Sbjct: 17  KKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKE-----------VKEKFDSVI 63

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
                       VD +    + H      + ++E+ RIL+  G  +
Sbjct: 64  TLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVI 109

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 82.8 bits (205), Expect = 7e-19
 Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 8/129 (6%)

Query: 144 NRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENM 202
           +R     P++  K     F   +G  ++DV  G+G +    +K     G V A+D  E M
Sbjct: 19  SRLELFDPEKVLKE----FGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEM 74

Query: 203 LRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISR 262
           +   ++ + +       N+ +++++  ++P     VD +      H    P   + E+ R
Sbjct: 75  VNYAWEKVNKLGL---KNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKR 131

Query: 263 ILRSGGVFV 271
           + +      
Sbjct: 132 VAKPFAYLA 140

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 83.4 bits (206), Expect = 1e-18
 Identities = 33/177 (18%), Positives = 59/177 (33%), Gaps = 10/177 (5%)

Query: 141 QNFNRSGFPGPDEEFKMAQEYFKSAQGGLLV-DVSCGSGLFSRKFAKSGTYSGVVALDFS 199
            N  R G PG  E    A  +  +     L+ D+ CG+G  +   A   T   V  LDF 
Sbjct: 21  SNMERQG-PGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQ-VTGLDFL 78

Query: 200 ENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAE 259
              +       +Q    L + +  +   +  LPF +  +D + +  A++        + E
Sbjct: 79  SGFIDIFNRNARQSG--LQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFE-RGLNE 135

Query: 260 ISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNY-NYLTEEEIEDLCTSCGLT 315
             + L+ GG    +    +T         + +  +  Y    T           G  
Sbjct: 136 WRKYLKKGGYLAVSECSWFTDERP---AEINDFWMDAYPEIDTIPNQVAKIHKAGYL 189

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 83.3 bits (206), Expect = 1e-18
 Identities = 39/198 (19%), Positives = 63/198 (31%), Gaps = 23/198 (11%)

Query: 134 LYERGWRQNFNRS--GFPGPDEEFKMAQEYFK---SAQGGL-----LVDVSCGSGLFSRK 183
            + R W +N +       G D     A +       A   +     ++DV CG G  + +
Sbjct: 19  PFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVR 78

Query: 184 FAKSGTYSG--VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV 241
            A         V  +  S   + Q           L + +    AD   LPF     DAV
Sbjct: 79  LAT---ARDVRVTGISISRPQVNQANARATAAG--LANRVTFSYADAMDLPFEDASFDAV 133

Query: 242 HA-GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNY--- 297
            A  +  H  P    A+ E++R+LR GG      F+   +      +   +         
Sbjct: 134 WALESLHH-MPDRGRALREMARVLRPGGTVAIADFVL-LAPVEGAKKEAVDAFRAGGGVL 191

Query: 298 NYLTEEEIEDLCTSCGLT 315
           +    +E E       L 
Sbjct: 192 SLGGIDEYESDVRQAELV 209

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 81.1 bits (200), Expect = 3e-18
 Identities = 33/179 (18%), Positives = 60/179 (33%), Gaps = 32/179 (17%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           G  ++++ CG+G  +     +G +  V A D S  +  +    + +              
Sbjct: 44  GAKILELGCGAGYQAEAMLAAG-FD-VDATDGSPELAAEASRRLGRPV---------RTM 92

Query: 227 DVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSL 284
              +L     + DAV A A L   P    ++ +  I R L+ GG+F  +           
Sbjct: 93  LFHQLDAIDAY-DAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDK 151

Query: 285 TGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS----------KVQQSFIMFAAQKP 333
             R         YNY +EE +       G     +          +    F+  + +KP
Sbjct: 152 LARY--------YNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQELAQFLHVSVRKP 202

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 81.5 bits (201), Expect = 3e-18
 Identities = 38/201 (18%), Positives = 77/201 (38%), Gaps = 21/201 (10%)

Query: 138 GWRQNFNRSG--FPGPDEEFKMAQEYFKS------AQGGLLVDVSCGSGLFSRKFAKSGT 189
           G+++ +           +E++   E  +        + G ++D++CG G FS      G 
Sbjct: 2   GFKEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG- 60

Query: 190 YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHC 249
           +  VV +D SE+M+R+  ++ K       SN+  +  D  +L F     D V    ++  
Sbjct: 61  FE-VVGVDISEDMIRKAREYAKSRE----SNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115

Query: 250 WPS--PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIED 307
           +     +    E+ R+L+  G F+                 L+E ++    Y   + I D
Sbjct: 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPR-----LKESLVVGQKYWISKVIPD 170

Query: 308 LCTSCGLTNYTSKVQQSFIMF 328
                 +  + S+     + F
Sbjct: 171 QEERTVVIEFKSEQDSFRVRF 191

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 81.1 bits (200), Expect = 6e-18
 Identities = 33/200 (16%), Positives = 66/200 (33%), Gaps = 17/200 (8%)

Query: 119 KPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLV-DVSCGS 177
              S   F   F+   ++   RQ       PG  E  + A  +         + D+ CG+
Sbjct: 4   NNTSIHDFDFSFICNYFKLLKRQG------PGSPEATRKAVSFINELTDDAKIADIGCGT 57

Query: 178 GLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236
           G  +   A      G +  +D   + +    +   + N      +  +   +  LPF + 
Sbjct: 58  GGQTLFLAD--YVKGQITGIDLFPDFIEIFNENAVKAN--CADRVKGITGSMDNLPFQNE 113

Query: 237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQN 296
            +D + +  A++        + E S+ L+ GG    +    +TS        + +  +  
Sbjct: 114 ELDLIWSEGAIYN-IGFERGMNEWSKYLKKGGFIAVSEASWFTSERP---AEIEDFWMDA 169

Query: 297 YNYL-TEEEIEDLCTSCGLT 315
           Y  +       D     G T
Sbjct: 170 YPEISVIPTCIDKMERAGYT 189

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 81.5 bits (201), Expect = 6e-18
 Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 6/128 (4%)

Query: 145 RSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENML 203
           R  +   D    +    +K  +   +VD  CG G                  +D  E +L
Sbjct: 1   RDLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLL 60

Query: 204 RQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRI 263
            +  +  +        +   +  D   +     + D     A L    +P   + ++   
Sbjct: 61  AEARELFRLLP----YDSEFLEGDATEIELNDKY-DIAICHAFLLHMTTPETMLQKMIHS 115

Query: 264 LRSGGVFV 271
           ++ GG  +
Sbjct: 116 VKKGGKII 123

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 80.2 bits (198), Expect = 7e-18
 Identities = 26/160 (16%), Positives = 48/160 (30%), Gaps = 19/160 (11%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           Q   ++D+ CG G   R  A  G     V +D    ++       +          +  +
Sbjct: 52  QPERVLDLGCGEGWLLRALADRG--IEAVGVDGDRTLVDAA----RAAGAGEVHLASYAQ 105

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT----------F 275
               ++P    + D + A  AL         ++ +  +L  GG  V  T          +
Sbjct: 106 LAEAKVPVGKDY-DLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDY 163

Query: 276 LRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 315
                  S  G     + +  Y + T     +     GL 
Sbjct: 164 QDGWREESFAGFAGDWQPMPWY-FRTLASWLNALDMAGLR 202

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 80.0 bits (197), Expect = 8e-18
 Identities = 30/179 (16%), Positives = 56/179 (31%), Gaps = 23/179 (12%)

Query: 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
              G +++++ G+G ++R  +       V ALD S  M+ +              N+   
Sbjct: 45  NIRGDVLELASGTGYWTRHLSGLADR--VTALDGSAEMIAEA-------GRHGLDNVEFR 95

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFL----RY 278
           + D+        + DAV     L   P          +   +  GGV           R 
Sbjct: 96  QQDLFDWTPDRQW-DAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRL 154

Query: 279 TSSTSLTGRVLRERILQN-------YNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAA 330
                    V   R LQ+         + +  E+ +  T+ G +    +V   F+    
Sbjct: 155 EQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSVDEVHPGFLYATC 213

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 80.6 bits (199), Expect = 1e-17
 Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 19/153 (12%)

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           +D+ CG+G  + K A+SG    V+  D +  M+ +     +Q+      +L    AD   
Sbjct: 62  LDLGCGTGQLTEKIAQSGAE--VLGTDNAATMIEKA----RQN----YPHLHFDVADARN 111

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT--GRV 288
                   DAV + A LH    P  A+A I + L+SGG FV     +      L      
Sbjct: 112 FRVDKPL-DAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNA 170

Query: 289 LRERILQN------YNYLTEEEIEDLCTSCGLT 315
           L    + N      + + +  E  ++    G  
Sbjct: 171 LETLGIHNPQALNPWYFPSIGEYVNILEKQGFD 203

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 78.4 bits (193), Expect = 5e-17
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 12/114 (10%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
              ++D+  G+G +S    + G    VV +D S+ ML    +   ++         +V A
Sbjct: 55  PCRVLDLGGGTGKWSLFLQERGFE--VVLVDPSKEMLEVAREKGVKN---------VVEA 103

Query: 227 DVCRLPFASGFVDAVHA-GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT 279
               LPF SG  +AV A G  L    +   A +EI R+L   G+ + T    YT
Sbjct: 104 KAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYT 157

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 77.5 bits (191), Expect = 8e-17
 Identities = 26/223 (11%), Positives = 67/223 (30%), Gaps = 42/223 (18%)

Query: 132 SFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYS 191
              ++  +  + + +                       ++D+  G+GL S    +    +
Sbjct: 25  IPCFDDFYGVSVSIASVDTE---------------NPDILDLGAGTGLLSAFLMEKYPEA 69

Query: 192 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWP 251
               +D SE ML    +  + +       +  + AD  +  F   + D V +  ++H   
Sbjct: 70  TFTLVDMSEKMLEIAKNRFRGN-----LKVKYIEADYSKYDFEEKY-DMVVSALSIHHLE 123

Query: 252 SP--SNAVAEISRILRSGGVFVGTTFLRYTSS------TSLTGRVLR------ERILQNY 297
                        IL+  G+F+    +   ++       ++  + +       E I   Y
Sbjct: 124 DEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGY 183

Query: 298 NY------LTEEEIEDLCTSCGLTNYTSKVQQ-SFIMFAAQKP 333
                   +   +  +     G  + +   +   F +   +K 
Sbjct: 184 ERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRKT 226

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 76.4 bits (188), Expect = 2e-16
 Identities = 28/147 (19%), Positives = 49/147 (33%), Gaps = 10/147 (6%)

Query: 134 LYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGV 193
           + E  W +  +    P   + + +   Y +  +   ++D+ CGSG  S + A  G    V
Sbjct: 1   MPESYWEK-VSGKNIPSSLDLYPIIHNYLQ--EDDEILDIGCGSGKISLELASKG--YSV 55

Query: 194 VALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWP 251
             +D +   +R      +    N            +   L F     D     A L   P
Sbjct: 56  TGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVP 115

Query: 252 SPSN---AVAEISRILRSGGVFVGTTF 275
            P      + E+ R+L+ G       F
Sbjct: 116 DPKERSRIIKEVFRVLKPGAYLYLVEF 142

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 77.0 bits (189), Expect = 3e-16
 Identities = 26/128 (20%), Positives = 41/128 (32%), Gaps = 10/128 (7%)

Query: 151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDF 209
           P + +KM  EY       LLVDV CG G  + + A+       ++  D S  M++     
Sbjct: 22  PSDFYKMIDEYHDGE-RKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVI 80

Query: 210 IKQDNTILTSNLALVRADVCRLPFAS------GFVDAVHAGAALHCWPSPSNAVAEISRI 263
            +        N++   +      F          +D + A    H W             
Sbjct: 81  KEGSPDTY-KNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAH-WFDFEKFQRSAYAN 138

Query: 264 LRSGGVFV 271
           LR  G   
Sbjct: 139 LRKDGTIA 146

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 74.4 bits (183), Expect = 5e-16
 Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 13/110 (11%)

Query: 165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV 224
            +G  ++D  CG G      +K G +  V+  D    ++       KQD          V
Sbjct: 45  PRGAKILDAGCGQGRIGGYLSKQG-HD-VLGTDLDPILIDYA----KQDF----PEARWV 94

Query: 225 RADVCRLPFASGFVDAVHAGAALHCWPSPSN---AVAEISRILRSGGVFV 271
             D+     +    D + +   +  + +      A+A I R L + G  V
Sbjct: 95  VGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAV 144

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 72.6 bits (178), Expect = 8e-15
 Identities = 33/201 (16%), Positives = 67/201 (33%), Gaps = 25/201 (12%)

Query: 134 LYERGW-RQNFNRSGF--PGPDEEFKMAQEYFKSAQGGLL------------VDVSCGSG 178
            Y   W  ++ +   +  P   +E + A           L            +D+  G G
Sbjct: 35  FYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYG 94

Query: 179 LFSRKFAKSGTYSG--VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG 236
             +R   +     G  +  L+ +    ++  ++  Q    L  N+ +       +P    
Sbjct: 95  GAARFLVR---KFGVSIDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFLEIPCEDN 149

Query: 237 FVDAVHA-GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQ 295
             D + +  A LH  P       E +R+L+  GV   T  ++       + + + +RI  
Sbjct: 150 SYDFIWSQDAFLHS-PDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKL 208

Query: 296 NYNYLTEEEIEDLCTSCGLTN 316
            ++  +      L   CGL  
Sbjct: 209 -HDMGSLGLYRSLAKECGLVT 228

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 72.1 bits (177), Expect = 9e-15
 Identities = 30/187 (16%), Positives = 62/187 (33%), Gaps = 16/187 (8%)

Query: 134 LYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG- 192
           +YE  + +N+  SG     E  K      +  +   ++D+  G G       +     G 
Sbjct: 26  VYEFIFGENYISSGGL---EATKKILSDIELNENSKVLDIGSGLGGGCMYINE---KYGA 79

Query: 193 -VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA-GAALHC- 249
               +D   N++         +     + +     D+    F     D +++  A L   
Sbjct: 80  HTHGIDICSNIVNMA-----NERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALS 134

Query: 250 WPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLC 309
             + +    +  + L+  G  + T +   T   +           + Y  +T EE  D+ 
Sbjct: 135 LENKNKLFQKCYKWLKPTGTLLITDYCA-TEKENWDDEFKEYVKQRKYTLITVEEYADIL 193

Query: 310 TSCGLTN 316
           T+C   N
Sbjct: 194 TACNFKN 200

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 69.9 bits (171), Expect = 5e-14
 Identities = 22/155 (14%), Positives = 44/155 (28%), Gaps = 19/155 (12%)

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
            D+ CG G  +         + +  +D  ++ML +              N    +AD+  
Sbjct: 38  YDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKA----AD----RLPNTNFGKADLAT 89

Query: 231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF----------LRYTS 280
              A    D ++A A     P     ++++   L SGGV                +  T+
Sbjct: 90  WKPAQKA-DLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETA 148

Query: 281 STSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 315
                        L+        +  +  +     
Sbjct: 149 DGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSSR 183

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 67.2 bits (164), Expect = 2e-13
 Identities = 30/206 (14%), Positives = 64/206 (31%), Gaps = 23/206 (11%)

Query: 139 WRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF 198
           W + F++S +    E              G ++ ++ G G  +   A  G Y  V A+D 
Sbjct: 2   WDERFSQSEYVYGTEPNDFLVSVANQIPQGKILCLAEGEGRNACFLASLG-YE-VTAVDQ 59

Query: 199 SENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVA 258
           S   L +     ++        +  V++++      +   + + +               
Sbjct: 60  SSVGLAKAKQLAQEKG----VKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYP 115

Query: 259 EISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 318
           ++ + L+ GGVF+   F       + TG      +L        E ++    S       
Sbjct: 116 KVYQGLKPGGVFILEGFAPEQLQYN-TGGPKDLDLL-----PKLETLQSELPSLNWLIAN 169

Query: 319 SKV-----------QQSFIMFAAQKP 333
           +             + + I    QK 
Sbjct: 170 NLERNLDEGAYHQGKAALIQLLGQKL 195

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 68.2 bits (166), Expect = 4e-13
 Identities = 29/189 (15%), Positives = 55/189 (29%), Gaps = 25/189 (13%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G ++  V CG          S      +V +D+    L             L   + L R
Sbjct: 119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA--LAGQITLHR 176

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVA---EISRILRSGGVFVGTTFLRYTSST 282
            D  +L    G+ D + +       P  +          + L+ GG  V +      + +
Sbjct: 177 QDAWKLDTREGY-DLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALS 235

Query: 283 S--------------LTGRVLRERILQNY--NYLTEEEIEDLCTSCGLTN--YTSKVQQS 324
                             +++  R++Q       T  +        G T+  +     + 
Sbjct: 236 PDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRARL 295

Query: 325 FIMFAAQKP 333
           F    A+KP
Sbjct: 296 FPTVIARKP 304

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 68.6 bits (167), Expect = 4e-13
 Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 12/164 (7%)

Query: 167 GGLLVDVSCGSGLFSRKFAK-SGTYSGVVALDFSENML-----RQCYDFIKQDNTILTSN 220
           G  ++D+ CG+G      +K  G +  V+ +D  +N L        Y   K   +   SN
Sbjct: 84  GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSN 143

Query: 221 LALVRADV------CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT 274
           +  ++  +               VD V +    +   +      EI R+LR GG    + 
Sbjct: 144 VRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSD 203

Query: 275 FLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT 318
                  +    +            L  E+   L    G  +  
Sbjct: 204 VYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVR 247

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 66.6 bits (162), Expect = 5e-13
 Identities = 18/130 (13%), Positives = 34/130 (26%), Gaps = 19/130 (14%)

Query: 145 RSGFPGPDEEFKMAQEYFKSAQGGLLV-DVSCGSGLFSRKFAKSGTYSGVVALDFSENML 203
                GPD E        +       V +  CG G  + +F          A DFS  +L
Sbjct: 26  ARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQAAR--WAAYDFSPELL 83

Query: 204 RQCYDFIKQDNTILTSNLALVRADV-CRLPFA-SGFVDAVHAGAALHCWPSPSNAVAEIS 261
           +               +  +   +    LP         +           P++ +  + 
Sbjct: 84  KLARA--------NAPHADVYEWNGKGELPAGLGAPFGLIV------SRRGPTSVILRLP 129

Query: 262 RILRSGGVFV 271
            +      F+
Sbjct: 130 ELAAPDAHFL 139

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 66.2 bits (161), Expect = 8e-13
 Identities = 22/183 (12%), Positives = 54/183 (29%), Gaps = 21/183 (11%)

Query: 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT 215
           +  +E          +D   G G  +++      +  V  +D +E+ L Q   ++ ++  
Sbjct: 69  RFLREGPNKTGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGK 127

Query: 216 ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGT 273
                       +          D +     +        +  +      LR  G+ V  
Sbjct: 128 ---RVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIV-- 182

Query: 274 TFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSF-------I 326
                  + +  G +L +    +      + +  +  S GL+    + Q++         
Sbjct: 183 ----IKDNMAQEGVILDDV--DSSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVY 236

Query: 327 MFA 329
            FA
Sbjct: 237 SFA 239

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 65.4 bits (159), Expect = 1e-12
 Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 21/121 (17%)

Query: 172 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231
            + CG+   S +    G +  V ++D+S  ++                 L     DV +L
Sbjct: 48  VLGCGNSALSYELFLGG-FPNVTSVDYSSVVVAAMQACYAHVP-----QLRWETMDVRKL 101

Query: 232 PFASGFVDAVHAGAALHC---------------WPSPSNAVAEISRILRSGGVFVGTTFL 276
            F S   D V     L                   +    ++E+SR+L  GG F+  T  
Sbjct: 102 DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161

Query: 277 R 277
            
Sbjct: 162 A 162

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 12/162 (7%)

Query: 151 PDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 208
            D  +     +       G  + D+ CG+G  +   A       V  +D SE ML    +
Sbjct: 16  QDVPYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLADHYE---VTGVDLSEEMLEIAQE 72

Query: 209 FIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSN---AVAEISRILR 265
              + N     ++     D+  L              +L+   + ++        +R+L 
Sbjct: 73  KAMETN----RHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLT 128

Query: 266 SGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIED 307
            GG  +      Y   T   G+       Q+      +  E+
Sbjct: 129 DGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEE 170

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 65.1 bits (158), Expect = 2e-12
 Identities = 18/191 (9%), Positives = 41/191 (21%), Gaps = 23/191 (12%)

Query: 149 PGPD-EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCY 207
              D E  +              +D   G G  ++       Y+    L+  ++ML +  
Sbjct: 75  HDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAK 133

Query: 208 DFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILR 265
             +             + A +          D +                      + L 
Sbjct: 134 RELAGM-----PVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALT 188

Query: 266 SGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSF 325
             G               +           +    ++   + L    G+       Q+ +
Sbjct: 189 PNGYIFFKENCSTGDRFLV-------DKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEEW 241

Query: 326 -------IMFA 329
                   M+A
Sbjct: 242 PTDLFPLKMYA 252

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 29/152 (19%), Positives = 48/152 (31%), Gaps = 17/152 (11%)

Query: 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 219
           E  K  + G  +D+ CG+G  S   A +G Y  V A D +   +         +N     
Sbjct: 26  EAVKVVKPGKTLDLGCGNGRNSLYLAANG-YD-VDAWDKNAMSIANVERIKSIEN---LD 80

Query: 220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 277
           NL     D+  L F   + D + +   L    +      +A + R  + GG  +    + 
Sbjct: 81  NLHTRVVDLNNLTFDRQY-DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMD 139

Query: 278 YTSSTSLTGRVLRERILQNYNYLTEEEIEDLC 309
                   G               E E+    
Sbjct: 140 TADYPCTVGF---------PFAFKEGELRRYY 162

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 61.3 bits (149), Expect = 4e-11
 Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 13/126 (10%)

Query: 152 DEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
            +      E            +D++CG+G  +         +   A+D S+ ML +  + 
Sbjct: 21  KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF-KN-TWAVDLSQEMLSEAENK 78

Query: 210 IKQDNTILTSNLALVRADVCRLPFASGFVDAVH-AGAALHCWPSPS---NAVAEISRILR 265
            +           L   D+  L     F D +     + +              +S  L+
Sbjct: 79  FRSQG----LKPRLACQDISNLNINRKF-DLITCCLDSTNYIIDSDDLKKYFKAVSNHLK 133

Query: 266 SGGVFV 271
            GGVF+
Sbjct: 134 EGGVFI 139

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 60.2 bits (146), Expect = 9e-11
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 10/115 (8%)

Query: 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 219
           +     +   ++D++CG+G+ + + A+ G Y  VV LD  E MLR      K+ N     
Sbjct: 35  KEDAKREVRRVLDLACGTGIPTLELAERG-YE-VVGLDLHEEMLRVARRKAKERN----L 88

Query: 220 NLALVRADVCRLPFASGFVDAVHA-GAALHCWPSPSN--AVAEISRILRSGGVFV 271
            +  ++ DV  + F + F DAV    + +  +         ++++  L+ GGVF+
Sbjct: 89  KIEFLQGDVLEIAFKNEF-DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 59.7 bits (144), Expect = 1e-10
 Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 15/112 (13%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
              L+D +CG+G  ++  ++      V+ LD S++ L        ++NT   +N++    
Sbjct: 57  ELPLIDFACGNGTQTKFLSQFF--PRVIGLDVSKSALEIA----AKENT--AANISYRLL 108

Query: 227 DVCRLPFASGFVDA-----VHAGAALHCWPSP--SNAVAEISRILRSGGVFV 271
           D      A+          ++     H  P          +  +L   G   
Sbjct: 109 DGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMY 160

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 58.2 bits (141), Expect = 4e-10
 Identities = 21/161 (13%), Positives = 50/161 (31%), Gaps = 25/161 (15%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENML---RQCYDFIKQDNTILTSNLA 222
           +   ++D+ C SG       ++GT   V  ++         ++  D +   +        
Sbjct: 32  EWKEVLDIGCSSGALGAAIKENGTR--VSGIEAFPEAAEQAKEKLDHVVLGDI------- 82

Query: 223 LVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST 282
               +   +P+     D V  G  L     P   + ++   ++  GV + +     +  +
Sbjct: 83  ----ETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASI-PNVSHIS 137

Query: 283 SLTGRVLRERILQNY--------NYLTEEEIEDLCTSCGLT 315
            L   +        Y         + T  E+  +    G +
Sbjct: 138 VLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYS 178

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 58.8 bits (142), Expect = 4e-10
 Identities = 29/200 (14%), Positives = 57/200 (28%), Gaps = 44/200 (22%)

Query: 158 AQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT 215
           A+E+        G +++++ G G  +  F   G +  V AL+ S ++L      + +   
Sbjct: 72  AREFATRTGPVSGPVLELAAGMGRLTFPFLDLG-WE-VTALELSTSVLAAFRKRLAEAPA 129

Query: 216 ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS---NAVAEISRILRSGGVFVG 272
            +     LV+ D+        F   V   +        +      A +   L  GG F+ 
Sbjct: 130 DVRDRCTLVQGDMSAFALDKRF-GTVVISSGSINELDEADRRGLYASVREHLEPGGKFLL 188

Query: 273 TTFLRY-------TSSTSLTGRVLRERILQNYN--------------------------- 298
           +  +              L GR  R  +L   +                           
Sbjct: 189 SLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPADETTDPFVVCTHR 248

Query: 299 --YLTEEEIEDLCTSCGLTN 316
              L  +++       G   
Sbjct: 249 RRLLAPDQVVRELVRSGFDV 268

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 57.7 bits (139), Expect = 5e-10
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 4/120 (3%)

Query: 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN--T 215
                KS     ++D+ CG G       K  ++  +  +D S ++L +  D +K D    
Sbjct: 21  VVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPE 80

Query: 216 ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGT 273
           +    ++L ++ +          DA      +              +    R   V V T
Sbjct: 81  MQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST 140

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score = 56.9 bits (137), Expect = 8e-10
 Identities = 25/158 (15%), Positives = 48/158 (30%), Gaps = 28/158 (17%)

Query: 115 YTEVKPASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLL-VDV 173
           Y+    A+  LF+    +FL    + + F       P +         +     L+  D 
Sbjct: 18  YSGPSSAAQRLFQEDPEAFLL---YHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADF 74

Query: 174 SCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF 233
            CG    +                        C+D    D  +          D+ ++P 
Sbjct: 75  GCGDCRLASSIRNPVH----------------CFDLASLDPRV-------TVCDMAQVPL 111

Query: 234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
               VD      +L    +  + + E +R+L+ GG+  
Sbjct: 112 EDESVDVAVFCLSLM-GTNIRDFLEEANRVLKPGGLLK 148

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 57.6 bits (139), Expect = 9e-10
 Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 17/126 (13%)

Query: 152 DEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
             E        +    +   L+DV+CG+G+  R  A S   + V  L+ S +ML      
Sbjct: 34  HREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSF-GT-VEGLELSADMLAIA--- 88

Query: 210 IKQDNTILTSNLALVRADVCRLPFASGFVDAVH-AGAALHCWPSPS---NAVAEISRILR 265
            ++ N     +  L   D+        F  AV    +++      +    A+   +  + 
Sbjct: 89  -RRRN----PDAVLHHGDMRDFSLGRRF-SAVTCMFSSIGHLAGQAELDAALERFAAHVL 142

Query: 266 SGGVFV 271
             GV V
Sbjct: 143 PDGVVV 148

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 17/126 (13%)

Query: 152 DEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
             E     +  +S   +   L+DV+CG+G     F K         L+ SE+ML      
Sbjct: 24  AAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEF-GD-TAGLELSEDMLTHA--- 78

Query: 210 IKQDNTILTSNLALVRADVCRLPFASGFVDAVH-AGAALHCWPSPS---NAVAEISRILR 265
            ++       +  L + D+        F  AV    +++    +      AVA  +  L 
Sbjct: 79  -RKRL----PDATLHQGDMRDFRLGRKF-SAVVSMFSSVGYLKTTEELGAAVASFAEHLE 132

Query: 266 SGGVFV 271
            GGV V
Sbjct: 133 PGGVVV 138

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 14/128 (10%)

Query: 172 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231
           ++ C +G F+ K A       +  +D     + +         T   S+++    D+ + 
Sbjct: 57  EIGCAAGAFTEKLAPHCKR--LTVIDVMPRAIGRA-----CQRTKRWSHISWAATDILQF 109

Query: 232 PFASGFVDAVHAGAALHCWPSPS---NAVAEISRILRSGG-VFVGTTFLRYTSSTSLTGR 287
             A  F D +     L+     +    A+  + ++L  GG +  G+   R  +       
Sbjct: 110 STAELF-DLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS--ARDATCRRWGHV 166

Query: 288 VLRERILQ 295
              E ++ 
Sbjct: 167 AGAETVIT 174

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 55.3 bits (133), Expect = 3e-09
 Identities = 16/120 (13%), Positives = 33/120 (27%), Gaps = 4/120 (3%)

Query: 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NT 215
                K +    ++D+ CG G   +   K   +  +  +D S   L    + + +     
Sbjct: 21  VVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPR 80

Query: 216 ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGT 273
                L L++  +          DA      +              +    +   V V T
Sbjct: 81  NQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTT 140

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 55.9 bits (134), Expect = 4e-09
 Identities = 18/169 (10%), Positives = 47/169 (27%), Gaps = 16/169 (9%)

Query: 172 DVSCGSGLFSRKFAK------SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
            +  G+G    +          G       ++ S   + +  + + + + +     A  +
Sbjct: 58  SIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHK 117

Query: 226 ADV------CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT 279
                              D +H    L+        +     +L +    +       +
Sbjct: 118 ETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV-SGS 176

Query: 280 SSTSLTGRVLRERILQN--YNYLTEEEIEDLCTSCGLTNYTSKVQQSFI 326
           S      +    R  Q+    Y+T +++  +  + GL  Y      S +
Sbjct: 177 SGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLK-YECYDLLSTM 224

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 53.9 bits (129), Expect = 2e-08
 Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 8/108 (7%)

Query: 172 DVSCGSGLFSRKFAKSGTYSG-VVALDFSEN------MLRQCYDFIKQDNTILTSNLALV 224
           ++ CG G  S   A     SG V  +D +         L Q ++ +          +   
Sbjct: 49  EIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFN 108

Query: 225 RADVCRL-PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
                 L P A    D V    +L  + S +        +        
Sbjct: 109 TNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVD 156

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 53.9 bits (129), Expect = 2e-08
 Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 21/161 (13%)

Query: 124 ELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRK 183
           + +     + +++       +R+      E         +      ++DV+CG+G+ S  
Sbjct: 20  DQYADGEAARVWQLYIGDTRSRT-----AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIM 74

Query: 184 FAKSGTYSGVVALDFSENML---RQCYDFIKQDNTILTSNLALVRADVC--RLPFASGFV 238
             + G +S V ++D S+ ML    +     +++       +           +P   GF 
Sbjct: 75  LVEEG-FS-VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGF- 131

Query: 239 DAV-HAGAALHCWPSPSN-------AVAEISRILRSGGVFV 271
           DAV   G +    P           A+  I+ ++R GG+ V
Sbjct: 132 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 52.7 bits (126), Expect = 5e-08
 Identities = 26/206 (12%), Positives = 60/206 (29%), Gaps = 13/206 (6%)

Query: 133 FLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG 192
                  ++    S             +  K      ++D+ CG G  S   +  G    
Sbjct: 87  CTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLG--YD 144

Query: 193 VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPS 252
           V + D +EN +    +  +++N     N++    D+        + D + +         
Sbjct: 145 VTSWDHNENSIAFLNETKEKENL----NISTALYDINAANIQENY-DFIVSTVVFMFLNR 199

Query: 253 PSNA--VAEISRILRSGGVFVGTTFLRY--TSSTSLTGRVLRERILQNY--NYLTEEEIE 306
                 +  +      GG  +    +                E  L+ Y  ++   E  E
Sbjct: 200 ERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKDWEFLEYNE 259

Query: 307 DLCTSCGLTNYTSKVQQSFIMFAAQK 332
           ++          ++++  F    A+K
Sbjct: 260 NMGELHKTDENGNRIKMKFATMLARK 285

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 50.7 bits (121), Expect = 8e-08
 Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 13/116 (11%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G  +VD +CG+G  +   A     +G V   D  +  +      +   N  L   + L++
Sbjct: 23  GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN--LIDRVTLIK 80

Query: 226 ADVCR-LPFASGFVDAVHAGAALHCWP---------SPSNAVAEISRILRSGGVFV 271
                   +    V AV                   +   A+++   +L +GG+  
Sbjct: 81  DGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIIT 136

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 50.9 bits (121), Expect = 2e-07
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 11/146 (7%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           +G  ++D+ CG G    K+ ++G       +D +E  +       +              
Sbjct: 64  RGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQD 122

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPS----NAVAEISRILRSGGVFVGTTFLRYTSS 281
           +    +     F D + +  + H   S S     A   I+R LR GG F+ T   R    
Sbjct: 123 SYGRHMDLGKEF-DVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDV-- 179

Query: 282 TSLTGRVLRERILQNYNYLTEEEIED 307
                   ++  + N  Y  E E  +
Sbjct: 180 ---ILERYKQGRMSNDFYKIELEKME 202

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 29/189 (15%), Positives = 62/189 (32%), Gaps = 30/189 (15%)

Query: 133 FLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG 192
           FL+E  +R +             +    YFK      ++D+ CG G F     + G    
Sbjct: 15  FLFEEKFRGSRELV-----KARLRRYIPYFKG--CRRVLDIGCGRGEFLELCKEEGIE-- 65

Query: 193 VVALDFSENMLRQC---YDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAAL-H 248
            + +D +E+M++ C   ++ +K D       L               ++D V     + H
Sbjct: 66  SIGVDINEDMIKFCEGKFNVVKSD---AIEYLK---------SLPDKYLDGVMISHFVEH 113

Query: 249 CW-PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIED 307
                    ++     ++     V  +     + TSL   +       +   +  E ++ 
Sbjct: 114 LDPERLFELLSLCYSKMKYSSYIVIES----PNPTSLYSLINFYIDPTHKKPVHPETLKF 169

Query: 308 LCTSCGLTN 316
           +    G  +
Sbjct: 170 ILEYLGFRD 178

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302

 Score = 48.6 bits (115), Expect = 1e-06
 Identities = 18/129 (13%), Positives = 44/129 (34%), Gaps = 15/129 (11%)

Query: 161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN 220
           +   +    ++ +  G+G    K+      + +VA D   + + +  +   + N+ + + 
Sbjct: 43  FLDDSNKRKVLAIDFGNGADLEKYFYGEI-ALLVATDPDADAIARGNERYNKLNSGIKTK 101

Query: 221 LALVRADVC-----------RLPFASGFVDAVHAGAALH-CWPSP--SNAVAEISRILRS 266
                               R  F  G  + +    A+H  +     +  +  +S +  S
Sbjct: 102 YYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS 161

Query: 267 GGVFVGTTF 275
           GG  + TT 
Sbjct: 162 GGKVLITTM 170

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 21/195 (10%), Positives = 50/195 (25%), Gaps = 24/195 (12%)

Query: 135 YERGWRQNFNRSGFPGPD---EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYS 191
           Y++  +           D       M + +    + G L+++    G F+ +  +    +
Sbjct: 8   YDQEIKDTAGHKYAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF--N 65

Query: 192 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWP 251
            +  ++ SE  +             L   +  + +          + D +     L    
Sbjct: 66  DITCVEASEEAISHA-------QGRLKDGITYIHSRFEDAQLPRRY-DNIVLTHVLEHID 117

Query: 252 SPSNAVAEI-SRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYN----------YL 300
            P   +  I    L  GG            S  +  ++                      
Sbjct: 118 DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTY 177

Query: 301 TEEEIEDLCTSCGLT 315
             + +E   +  GL 
Sbjct: 178 ALDTLERDASRAGLQ 192

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 10/130 (7%)

Query: 155 FKMAQEYFKSAQGG---LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF-I 210
             ++++      G    + +D+  G G    K A +   +  + +D  +  L       I
Sbjct: 10  VDLSKDELTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKII 69

Query: 211 KQDNTILTSNLALVRADVCRLPFA-SGFVDAVHA----GAALHCWPSPSNAV-AEISRIL 264
           K+ +    SN+  V A    LPF      D++      G  L     P+  + + ++ + 
Sbjct: 70  KKPSKGGLSNVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLA 129

Query: 265 RSGGVFVGTT 274
           +    F   T
Sbjct: 130 KKEAHFEFVT 139

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 17/122 (13%), Positives = 34/122 (27%), Gaps = 6/122 (4%)

Query: 158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTI 216
           A ++ + +    LVD  CGSG           +   ++ +D S   L +    +      
Sbjct: 713 ALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNK 772

Query: 217 LTSNLA---LVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFV 271
              N+    L    +         VD       +             ++  +     + V
Sbjct: 773 EACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIV 832

Query: 272 GT 273
            T
Sbjct: 833 ST 834

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 27/174 (15%), Positives = 54/174 (31%), Gaps = 14/174 (8%)

Query: 137 RGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVV-A 195
           R W  N  RS                   +G  ++ +   SG  +   +      G +  
Sbjct: 53  REW--NAYRSKLA---AALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYG 107

Query: 196 LDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSN 255
           ++F+  ++R     ++        N+  +  D          V+ V    A    P  + 
Sbjct: 108 VEFAPRVMRDLLTVVRD-----RRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAA 162

Query: 256 AVAEISRI-LRSGGVFVGTTFLRYTSSTSLTGRVLRE--RILQNYNYLTEEEIE 306
            V   +R  LR GG  +     R    T+    V +   + L +     ++ + 
Sbjct: 163 IVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVH 216

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 27/156 (17%), Positives = 46/156 (29%), Gaps = 19/156 (12%)

Query: 133 FLYERGWRQNFNRS-GFPGPDEEFKMAQ-EYFKSAQGGL-----LVDVSCGSGLFSRKFA 185
                G  ++              + AQ E+     G       LVD  CG G       
Sbjct: 77  DRAALGDPEHSEYEKKVIAELHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAH 136

Query: 186 KSGTYSG--VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA 243
           +     G  V  +  S           ++    +  ++     ++   PF  G V A   
Sbjct: 137 R---RFGSRVEGVTLSAAQADFGNRRARELR--IDDHVRSRVCNMLDTPFDKGAVTASWN 191

Query: 244 -GAALHC-WPSPSNAVAEISRILRSGGVFVGTTFLR 277
             + ++          +E SR L+ GG +V  T   
Sbjct: 192 NESTMYVDLHD---LFSEHSRFLKVGGRYVTITGCW 224

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230

 Score = 45.5 bits (107), Expect = 8e-06
 Identities = 21/152 (13%), Positives = 51/152 (33%), Gaps = 12/152 (7%)

Query: 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 219
           +     +   ++ +   +G      A       V A++++  ++R+  D   +       
Sbjct: 68  KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-----E 122

Query: 220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNA---VAEISRILRSGGVFVGTTFL 276
           N+  +  D  +    +  V+ V           P+ A   +      L+ GG  +     
Sbjct: 123 NIIPILGDANKPQEYANIVEKVD--VIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKA 180

Query: 277 RYTSSTSLTGRVLRE--RILQNYNYLTEEEIE 306
           R    T     + +E   IL+   +   +E++
Sbjct: 181 RSIDVTKDPKEIFKEQKEILEAGGFKIVDEVD 212

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 13/115 (11%)

Query: 169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT-SNLALVRAD 227
           +++DV  G G    K A+      VVALD  ++ + +               NL  + A 
Sbjct: 30  VVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWAT 89

Query: 228 VCRLPFASGFVDAVHAGAALHCWP--------SPSNAVAEISRILRSGGVFVGTT 274
             RLP  SG V  +H    L  W         S    +  ++ + R G  F+   
Sbjct: 90  AERLPPLSG-VGELHV---LMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL 140

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 17/128 (13%)

Query: 156 KMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD 213
            M+ ++         ++VD + G+G  +   A       V A D  E  L +    +   
Sbjct: 10  HMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGLSKK--VYAFDVQEQALGKTSQRLSDL 67

Query: 214 NTILTSNLALVRADVCRLP-------FASGFVDAVHAGAALHCWPSPS---NAVAEISRI 263
                 N  L+      L         A+ F       A       P     A+ +I   
Sbjct: 68  G---IENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDR 124

Query: 264 LRSGGVFV 271
           L  GG   
Sbjct: 125 LEVGGRLA 132

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 4/102 (3%)

Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++D+  GSG     +A+    +    +D S     Q     ++    ++  +  +  D  
Sbjct: 40  ILDLGSGSGEMLCTWARDHGIT-GTGIDMSSLFTAQAKRRAEELG--VSERVHFIHNDAA 96

Query: 230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFV 271
                    D      A       + A   +++ L+ GG+ +
Sbjct: 97  GYVANEKC-DVAACVGATWIAGGFAGAEELLAQSLKPGGIML 137

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 53/322 (16%), Positives = 97/322 (30%), Gaps = 100/322 (31%)

Query: 24  NSP-RLPQSLRFSSTIRAVTLQPAKSERNQTLELEGDLFSCPICYEPLIRKGPTGLTLGA 82
            S   +  +LR   T+ +   +  +    + L +       PI  E    + P+ +T   
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ---RQPSMMT--R 110

Query: 83  IYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERG---- 138
           +Y      R  D+ Y+    +    V S L+ Y +++ A  EL  +  V  +   G    
Sbjct: 111 MYIE---QR--DRLYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAKNV-LID--GVLGS 161

Query: 139 ---W------RQNFNRSGFPG------------PDEEFKMAQEYFKSAQGGLLVDVSCGS 177
              W           +                 P+   +M Q+        LL  +    
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK--------LLYQIDP-- 211

Query: 178 GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN-----LALVRADVCRLP 232
                        +     D S N+  + +    +   +L S      L LV  +V    
Sbjct: 212 -------------NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAK 257

Query: 233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGRVLRE 291
             + F         L C            +IL      + TT  R+   T  L+      
Sbjct: 258 AWNAF--------NLSC------------KIL------L-TT--RFKQVTDFLSAATTTH 288

Query: 292 RILQNYNY-LTEEEIEDLCTSC 312
             L +++  LT +E++ L    
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKY 310

>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 24/165 (14%), Positives = 47/165 (28%), Gaps = 10/165 (6%)

Query: 149 PGPDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGV--VALDFSENMLR 204
           PG            +        + D+ C  G  +    ++     V  + +D S+ M+ 
Sbjct: 39  PGYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVE 98

Query: 205 QCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISR 262
           +C   I   +    S + +                 V     L   P       + +I  
Sbjct: 99  RCRQHIAAYH----SEIPVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYE 154

Query: 263 ILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIED 307
            L   GV V +   R+  +      +      +  N  +E E+  
Sbjct: 155 GLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQ 199

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* 3pla_E* Length = 232

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 30/177 (16%), Positives = 56/177 (31%), Gaps = 20/177 (11%)

Query: 137 RGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAK-SGTYSGVVA 195
           R W  N  RS   G         +     +G  ++ +   SG      +           
Sbjct: 52  REW--NAFRSKLAGA---ILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYG 106

Query: 196 LDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDAVHAGAALHCWP 251
           ++FS  ++R+     ++       N+  + AD  R P         VD ++   A     
Sbjct: 107 VEFSPRVVRELLLVAQRRP-----NIFPLLAD-ARFPQSYKSVVENVDVLYVDIAQP--D 158

Query: 252 SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI--LQNYNYLTEEEIE 306
               A+      L+  G  +     R    T     + +  +  L+N N+ T + I 
Sbjct: 159 QTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIIN 215

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	333
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.93
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.92
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.92
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.91
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.91
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.9
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.9
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.9
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.9
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.89
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.89
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.89
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.88
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.88
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.88
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.88
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.88
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.88
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.88
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.88
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.87
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.87
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.87
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.87
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.87
3ocj_A	305	Putative exported protein; structural genomics, PS	99.87
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.86
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.86
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.86
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.86
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.86
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.86
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.86
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.86
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.86
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.86
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.86
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.86
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.86
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.86
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.85
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.85
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.85
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.85
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.85
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.85
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.85
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.85
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.85
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.85
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.84
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.84
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.84
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.84
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.84
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.84
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.84
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.83
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.83
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.83
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.83
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.83
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.82
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.82
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.82
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.82
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.82
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.82
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.82
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.81
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.81
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.81
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.81
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.81
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.8
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.8
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.8
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.8
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.8
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.8
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.79
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.79
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.79
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.79
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.78
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.78
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.78
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.78
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.78
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.77
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.76
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.76
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.76
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.76
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.75
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.75
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.75
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.75
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.75
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.74
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.73
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.73
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.73
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.73
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.73
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.73
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.73
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.73
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.73
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.72
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.72
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.72
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.72
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.71
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.71
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.71
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.71
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.71
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.71
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.7
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.7
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.7
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.7
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.7
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.69
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.69
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.68
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.68
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.68
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.67
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.67
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.66
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.66
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.66
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.66
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.65
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.65
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.64
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.64
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.64
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.63
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.63
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.63
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.63
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.63
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.63
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.62
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.62
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.62
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.62
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.62
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.62
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.61
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.61
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.61
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.61
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.61
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.61
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.61
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.61
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.6
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.6
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.6
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.6
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.6
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.6
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.6
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.59
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.59
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.58
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.58
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.58
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.58
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.58
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.57
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.57
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.57
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.57
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.57
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.57
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.56
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.56
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.56
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.55
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.55
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.54
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.53
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.53
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.53
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.53
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.52
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.52
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.52
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.52
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.51
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.51
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.51
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.5
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.5
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.5
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.5
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.49
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.49
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.49
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.48
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.48
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.48
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.47
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.47
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.47
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.46
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.45
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.45
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.45
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.44
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.44
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.44
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.44
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.43
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.42
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.42
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.4
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.38
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.38
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.38
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.38
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.37
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.37
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.37
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.36
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.36
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.36
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.36
2o07_A	304	Spermidine synthase; structural genomics, structur	99.34
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.34
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.34
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.34
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.33
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.32
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.31
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.31
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.27
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.26
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.25
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.24
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.23
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.22
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.21
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.21
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.21
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.2
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.19
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.17
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.17
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.16
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.15
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.15
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.09
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	99.02
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.02
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	99.02
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.0
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.0
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.98
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.96
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.94
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.94
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.94
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.9
3lkd_A	542	Type I restriction-modification system methyltrans	98.88
3khk_A	544	Type I restriction-modification system methylation	98.87
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.82
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.81
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.81
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.79
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.79
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.78
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.78
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.74
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.69
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.66
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.65
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.64
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.57
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.5
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.43
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.42
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.38
3ufb_A	530	Type I restriction-modification system methyltran	98.35
2jny_A	67	Uncharacterized BCR; structure, CGR1, NESG, struct	98.28
2jr6_A	68	UPF0434 protein NMA0874; solution, structural geno	98.24
2hf1_A	68	Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A	98.24
2js4_A	70	UPF0434 protein BB2007; NESG, northeast structural	98.24
2pk7_A	69	Uncharacterized protein; NESG, PLR1, putative tetr	98.22
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.19
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.16
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.14
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.14
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	98.12
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.01
2kpi_A	56	Uncharacterized protein SCO3027; zinc finger, PSI-	98.0
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	97.89
2k5r_A	97	Uncharacterized protein XF2673; solution structure	97.89
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.86
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.83
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.74
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.52
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	97.5
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.43
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.37
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.32
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.13
1pft_A	50	TFIIB, PFTFIIBN; N-terminal domain, transcription	96.64
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.48
2oo3_A	283	Protein involved in catabolism of external DNA; st	96.36
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.26
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	96.25
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.13
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.09
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.03
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.99
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	95.99
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.92
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	95.87
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.81
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.53
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	95.43
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.37
3q87_A	125	Putative uncharacterized protein ECU08_1170; SAM-m	95.35
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.31
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	95.25
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.23
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.19
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	95.19
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.15
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	95.15
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.14
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.11
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.03
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.02
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	94.99
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	94.93
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	94.7
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	94.67
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	94.66
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	94.55
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	94.53
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	94.48
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.47
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.42
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	94.38
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	94.38
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	94.32
3gms_A	340	Putative NADPH:quinone reductase; structural genom	94.32
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	94.31
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	94.26
2zig_A	297	TTHA0409, putative modification methylase; methylt	94.18
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	94.17
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	94.17
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	94.12
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.1
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.04
3j20_Y	50	30S ribosomal protein S27AE; archaea, archaeal, KI	93.99
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	93.87
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	93.77
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	93.71
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	93.62
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	93.61
1dl6_A	58	Transcription factor II B (TFIIB); zinc ribbon, ge	93.57
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	93.5
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	93.32
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	93.31
4eye_A	342	Probable oxidoreductase; structural genomics, niai	93.28
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	93.19
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	93.1
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	92.99
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	92.93
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	92.88
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	92.84
1qyp_A	57	RNA polymerase II; transcription, RPB9, Zn ribbon,	92.72
3me5_A	482	Cytosine-specific methyltransferase; structural ge	92.58
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	92.53
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	92.51
2j6a_A	141	Protein TRM112; translation termination, methyltra	92.42
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	92.33
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	92.26
3jyw_9	72	60S ribosomal protein L43; eukaryotic ribosome, RA	92.23
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	92.19
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	92.18
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	92.14
2akl_A	138	PHNA-like protein PA0128; two domains, Zn binding	92.04
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	92.01
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	91.96
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	91.89
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	91.82
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	91.61
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	91.58
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	91.46
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	91.39
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	91.3
2k4x_A	55	30S ribosomal protein S27AE; metal-binding, ribonu	91.25
2jne_A	101	Hypothetical protein YFGJ; zinc fingers, two zinc,	91.06
1tfi_A	50	Transcriptional elongation factor SII; transcripti	90.95
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	90.76
3j21_i	83	50S ribosomal protein L37AE; archaea, archaeal, KI	90.73
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	90.62
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	90.38
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	90.28
3iz5_m	92	60S ribosomal protein L43 (L37AE); eukaryotic ribo	90.03
3cc2_Z	116	50S ribosomal protein L37AE, 50S ribosomal protein	89.96
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	89.8
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	89.6
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	89.57
2jrp_A	81	Putative cytoplasmic protein; two-zinc binding pro	89.4
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	89.38
4a17_Y	103	RPL37A, 60S ribosomal protein L32; eukaryotic ribo	89.27
3izc_m	92	60S ribosomal protein RPL43 (L37AE); eukaryotic ri	89.18
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	89.1
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	89.07
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	89.06
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	89.02
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	88.99
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	88.84
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	88.73
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	88.71
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	88.66
1ffk_W	73	Ribosomal protein L37AE; ribosome assembly, RNA-RN	88.46
1wii_A	85	Hypothetical UPF0222 protein MGC4549; domain of un	88.43
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	88.42
1gh9_A	71	8.3 kDa protein (gene MTH1184); beta+alpha complex	88.19
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	87.89
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	87.79
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	87.79
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	87.35
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	87.23
3po3_S	178	Transcription elongation factor S-II; RNA polymera	87.22
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	86.58
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	85.91
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	85.9
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	85.83
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	85.73
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	85.37
3j21_g	51	50S ribosomal protein L40E; archaea, archaeal, KIN	85.17
3c85_A	183	Putative glutathione-regulated potassium-efflux S	85.11
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	84.93
3h0g_I	113	DNA-directed RNA polymerases I, II, and III subuni	84.78
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	84.64
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	84.4
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	84.4
3h0g_I	113	DNA-directed RNA polymerases I, II, and III subuni	84.33
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	83.92
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	83.79
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	83.65
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	83.54
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	83.53
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	83.42
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	83.31
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	83.16
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	83.09
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	82.83
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	82.71
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	82.67
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	82.67
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	82.64
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	82.61
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	82.55
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	82.14
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	81.85
3ga8_A	78	HTH-type transcriptional regulator MQSA (YGIT/B30;	81.75
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	81.53
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	80.97
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	80.8
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	80.79
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	80.43
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	80.09
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	80.02

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.93  E-value=3.7e-26  Score=215.97  Aligned_cols=168  Identities=11%  Similarity=0.156  Sum_probs=125.9

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      ..+.+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.|+++    +.. .....+...+...+++
T Consensus        95 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~gvD~s~~~~~~a~~~----~~~-~~~~~~~~~~~~~l~~  167 (416)
T 4e2x_A           95 LARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV--RHLGFEPSSGVAAKAREK----GIR-VRTDFFEKATADDVRR  167 (416)
T ss_dssp             HHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC--EEEEECCCHHHHHHHHTT----TCC-EECSCCSHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC--cEEEECCCHHHHHHHHHc----CCC-cceeeechhhHhhccc
Confidence            445566666666788999999999999999999876  999999999999999874    110 0011122344455666


Q ss_pred             CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCC
Q 019957          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCG  313 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aG  313 (333)
                      .+++||+|++.++++|++|+..++++++++|||||++++.+++.....   ....+......|..+++.+++..+++++|
T Consensus       168 ~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~l~~ll~~aG  244 (416)
T 4e2x_A          168 TEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIV---AKTSFDQIFDEHFFLFSATSVQGMAQRCG  244 (416)
T ss_dssp             HHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHH---HHTCGGGCSTTCCEECCHHHHHHHHHHTT
T ss_pred             CCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhh---hhcchhhhhhhhhhcCCHHHHHHHHHHcC
Confidence            678999999999999999999999999999999999999987642100   00111122247788999999999999999


Q ss_pred             CcEEEEEE----eCeEEEEEEe
Q 019957          314 LTNYTSKV----QQSFIMFAAQ  331 (333)
Q Consensus       314 f~~v~~~~----~~~~~~~~a~  331 (333)
                      |++++...    .+.+.++.++
T Consensus       245 f~~~~~~~~~~~~g~l~~~~~~  266 (416)
T 4e2x_A          245 FELVDVQRLPVHGGEVRYTLAR  266 (416)
T ss_dssp             EEEEEEEEECGGGSEEEEEEEE
T ss_pred             CEEEEEEEccCCCCEEEEEEEe
Confidence            99988755    3455555554

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.92  E-value=6.9e-24  Score=187.77  Aligned_cols=181  Identities=15%  Similarity=0.184  Sum_probs=138.3

Q ss_pred             CCcHHHHHHHHHhhc--ccCCCeEEEEcCCcCHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEE
Q 019957          149 PGPDEEFKMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV  224 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~  224 (333)
                      |...+..+.+..++.  ..++.+|||||||+|.++..+++..  ++.+|+|+|+|+.|++.|++++...+.  ..++.++
T Consensus        51 P~Y~~~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~--~~~v~~~  128 (261)
T 4gek_A           51 PGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA--PTPVDVI  128 (261)
T ss_dssp             TTHHHHHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC--SSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc--CceEEEe
Confidence            445555555444433  3568899999999999999999874  356899999999999999999988764  5689999


Q ss_pred             EccCCCCCCCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCc--chhhHHHHH---------
Q 019957          225 RADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSST--SLTGRVLRE---------  291 (333)
Q Consensus       225 ~~d~~~lp~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--~~~~~~~~~---------  291 (333)
                      ++|+.++|++  .||+|++..+|+|++++  ..+|++++++|||||+|++.+........  ..+...+..         
T Consensus       129 ~~D~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~  206 (261)
T 4gek_A          129 EGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSE  206 (261)
T ss_dssp             ESCTTTCCCC--SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGG
T ss_pred             eccccccccc--ccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCH
Confidence            9999999864  69999999999999865  46899999999999999999876542110  111111100         


Q ss_pred             --------hhhccCCCCCHHHHHHHHHhCCCcEEEEE-EeCeEEEEEEeCC
Q 019957          292 --------RILQNYNYLTEEEIEDLCTSCGLTNYTSK-VQQSFIMFAAQKP  333 (333)
Q Consensus       292 --------~~~~~~~~~t~~~l~~ll~~aGf~~v~~~-~~~~~~~~~a~kp  333 (333)
                              ........++.+++..+|+++||+.++++ ....|..++|.||
T Consensus       207 ~ei~~~~~~l~~~~~~~s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K~  257 (261)
T 4gek_A          207 LEISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALKA  257 (261)
T ss_dssp             STTHHHHHHHHHHCCCBCHHHHHHHHHHHTCSEEEEEEEETTEEEEEEECC
T ss_pred             HHHHHHHhhhcccccCCCHHHHHHHHHHcCCCeEEEEEEeccEEEEEEEEc
Confidence                    01123456789999999999999998874 4567888899986

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.92  E-value=5.4e-24  Score=182.77  Aligned_cols=177  Identities=21%  Similarity=0.276  Sum_probs=138.9

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ....+.+.+.+...++ +|||+|||+|.++..+++. +..+++|+|+|+.+++.+++++...++  ..++.++.+|+.++
T Consensus        30 ~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~  105 (219)
T 3dlc_A           30 PIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANL--NDRIQIVQGDVHNI  105 (219)
T ss_dssp             HHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECBTTBC
T ss_pred             HHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccc--cCceEEEEcCHHHC
Confidence            3445566666665545 9999999999999999998 456999999999999999999988764  56899999999999


Q ss_pred             CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHH-------HHHhhhccCCCCCHHH
Q 019957          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV-------LRERILQNYNYLTEEE  304 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~t~~~  304 (333)
                      ++++++||+|++..+++|++++..+++++.++|||||.+++.+..........+...       |......+...++.++
T Consensus       106 ~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (219)
T 3dlc_A          106 PIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVER  185 (219)
T ss_dssp             SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHH
T ss_pred             CCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHH
Confidence            988899999999999999999999999999999999999998765432111111111       1111124566778999


Q ss_pred             HHHHHHhCCCcEEEEEEeCeEEEEEEeC
Q 019957          305 IEDLCTSCGLTNYTSKVQQSFIMFAAQK  332 (333)
Q Consensus       305 l~~ll~~aGf~~v~~~~~~~~~~~~a~k  332 (333)
                      +.++++++||++++.........+..+|
T Consensus       186 ~~~~l~~aGf~~v~~~~~~~~~~~~~~k  213 (219)
T 3dlc_A          186 FQNVLDEIGISSYEIILGDEGFWIIISK  213 (219)
T ss_dssp             HHHHHHHHTCSSEEEEEETTEEEEEEBC
T ss_pred             HHHHHHHcCCCeEEEEecCCceEEEEec
Confidence            9999999999998876555444445554

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.91  E-value=2.6e-23  Score=179.05  Aligned_cols=165  Identities=15%  Similarity=0.189  Sum_probs=138.7

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (333)
                      +.+.+.+...++.+|||+|||+|.++..+++.+ +..+++|+|+|+.+++.+++++...+   ..++.++.+|+..+++.
T Consensus        27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~  103 (219)
T 3dh0_A           27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG---LKNVEVLKSEENKIPLP  103 (219)
T ss_dssp             HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT---CTTEEEEECBTTBCSSC
T ss_pred             HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEecccccCCCC
Confidence            445555666678899999999999999999885 56699999999999999999988776   45899999999999988


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      +++||+|++..+++|++++..+++++.++|||||.+++.++.......          ...+..+++.+++..+++++||
T Consensus       104 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~Gf  173 (219)
T 3dh0_A          104 DNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDK----------GPPPEEVYSEWEVGLILEDAGI  173 (219)
T ss_dssp             SSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSS----------SCCGGGSCCHHHHHHHHHHTTC
T ss_pred             CCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccccccc----------CCchhcccCHHHHHHHHHHCCC
Confidence            899999999999999999999999999999999999999877643211          1234567899999999999999


Q ss_pred             cEEEEEE-eCeEEEEEEeCC
Q 019957          315 TNYTSKV-QQSFIMFAAQKP  333 (333)
Q Consensus       315 ~~v~~~~-~~~~~~~~a~kp  333 (333)
                      ++++... ...+..++++|+
T Consensus       174 ~~~~~~~~~~~~~~~~~~k~  193 (219)
T 3dh0_A          174 RVGRVVEVGKYCFGVYAMIV  193 (219)
T ss_dssp             EEEEEEEETTTEEEEEEECC
T ss_pred             EEEEEEeeCCceEEEEEEec
Confidence            9888644 445566777764

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.91  E-value=8.2e-23  Score=180.72  Aligned_cols=159  Identities=19%  Similarity=0.271  Sum_probs=131.9

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      +.+.+.+...++.+|||||||+|.++..+++.++  +++|+|+|+.+++.+++++...+   .+++.++.+|+..+|+++
T Consensus        27 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~---~~~v~~~~~d~~~l~~~~  101 (260)
T 1vl5_A           27 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNG---HQQVEYVQGDAEQMPFTD  101 (260)
T ss_dssp             HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCC-CCCSCT
T ss_pred             HHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcC---CCceEEEEecHHhCCCCC
Confidence            5566666666788999999999999999999876  99999999999999999988766   458999999999999988


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH----hhhccCCCCCHHHHHHHHHh
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE----RILQNYNYLTEEEIEDLCTS  311 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~t~~~l~~ll~~  311 (333)
                      ++||+|++..+++|++|+..+|+++.++|||||.|++.++.....  +.....+..    ..+.+..+++.+++.++|++
T Consensus       102 ~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  179 (260)
T 1vl5_A          102 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEN--DAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEE  179 (260)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSS--HHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHH
T ss_pred             CCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCC--HHHHHHHHHHHHhcCccccCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999988765422  221111111    22356778999999999999


Q ss_pred             CCCcEEEEEE
Q 019957          312 CGLTNYTSKV  321 (333)
Q Consensus       312 aGf~~v~~~~  321 (333)
                      +||+++....
T Consensus       180 aGf~~~~~~~  189 (260)
T 1vl5_A          180 AGFELEELHC  189 (260)
T ss_dssp             HTCEEEEEEE
T ss_pred             CCCeEEEEEE
Confidence            9999877543

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.90  E-value=2.2e-22  Score=175.04  Aligned_cols=177  Identities=15%  Similarity=0.229  Sum_probs=138.3

Q ss_pred             cHHHHHHHHHhhc-ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC
Q 019957          151 PDEEFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (333)
Q Consensus       151 ~~~~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (333)
                      .....+.+...+. ..++.+|||||||+|.++..+++.++..+++|+|+|+.+++.+++++..     ..++.++.+|+.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~  102 (234)
T 3dtn_A           28 FDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG-----NLKVKYIEADYS  102 (234)
T ss_dssp             HHHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCS-----CTTEEEEESCTT
T ss_pred             HHHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhcc-----CCCEEEEeCchh
Confidence            3444566666665 4467899999999999999999997777999999999999999998655     338999999999


Q ss_pred             CCCCCCCCcceEEeccccccCCChH--HHHHHHHHhccCCcEEEEEEecccCCCc--chhhHHHHH--------------
Q 019957          230 RLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSST--SLTGRVLRE--------------  291 (333)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~--~~~~~~~~~--------------  291 (333)
                      ++++. ++||+|++..+++|++++.  .+++++.++|||||++++.++.......  ......|..              
T Consensus       103 ~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (234)
T 3dtn_A          103 KYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAA  181 (234)
T ss_dssp             TCCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHT
T ss_pred             ccCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHH
Confidence            99876 8999999999999998776  5999999999999999999977642211  000111110              


Q ss_pred             --hhhccCCCCCHHHHHHHHHhCCCcEEEE-EEeCeEEEEEEeCC
Q 019957          292 --RILQNYNYLTEEEIEDLCTSCGLTNYTS-KVQQSFIMFAAQKP  333 (333)
Q Consensus       292 --~~~~~~~~~t~~~l~~ll~~aGf~~v~~-~~~~~~~~~~a~kp  333 (333)
                        ....+...++.+++.++|+++||+++++ .....|.++.+.||
T Consensus       182 ~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~~  226 (234)
T 3dtn_A          182 GYERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRKT  226 (234)
T ss_dssp             TC----CCCCCBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEECC
T ss_pred             HHHhcccccccCHHHHHHHHHHcCCCceeeeeeecceeEEEEEec
Confidence              0114566789999999999999999986 45677788887765

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.90  E-value=3.2e-22  Score=178.05  Aligned_cols=164  Identities=20%  Similarity=0.236  Sum_probs=134.9

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (333)
Q Consensus       155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (333)
                      .+.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++....++  ..++.++.+|+.++|++
T Consensus        50 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~~~  126 (273)
T 3bus_A           50 TDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGL--ANRVTFSYADAMDLPFE  126 (273)
T ss_dssp             HHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTSCCSC
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEECccccCCCC
Confidence            3555666666678899999999999999999875 46999999999999999999888764  45799999999999988


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH--hhhccCCCCCHHHHHHHHHhC
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE--RILQNYNYLTEEEIEDLCTSC  312 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~t~~~l~~ll~~a  312 (333)
                      +++||+|++..+++|++++..+++++.++|||||++++.++.............+..  ....+...++.+++..+++++
T Consensus       127 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  206 (273)
T 3bus_A          127 DASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQA  206 (273)
T ss_dssp             TTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHT
T ss_pred             CCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHc
Confidence            899999999999999999999999999999999999999987643322221111111  122466789999999999999


Q ss_pred             CCcEEEEEE
Q 019957          313 GLTNYTSKV  321 (333)
Q Consensus       313 Gf~~v~~~~  321 (333)
                      ||++++...
T Consensus       207 Gf~~~~~~~  215 (273)
T 3bus_A          207 ELVVTSTVD  215 (273)
T ss_dssp             TCEEEEEEE
T ss_pred             CCeEEEEEE
Confidence            999987543

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.90  E-value=6.5e-22  Score=178.34  Aligned_cols=164  Identities=14%  Similarity=0.148  Sum_probs=133.5

Q ss_pred             HHHHHHHhh----cccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC
Q 019957          154 EFKMAQEYF----KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (333)
Q Consensus       154 ~~~~~~~~l----~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (333)
                      ..+.+.+.+    ...++.+|||||||+|.++..+++.. ..+++|+|+|+.+++.++++....++  ..++.++.+|+.
T Consensus        66 ~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~  142 (297)
T 2o57_A           66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGL--ADNITVKYGSFL  142 (297)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTC--TTTEEEEECCTT
T ss_pred             HHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEEcCcc
Confidence            345566666    55678899999999999999999873 23999999999999999999887764  568999999999


Q ss_pred             CCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHH
Q 019957          230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLC  309 (333)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll  309 (333)
                      ++|+++++||+|++..+++|++++..+|+++.++|||||++++.++.............+.... ....+.+.+++..++
T Consensus       143 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l  221 (297)
T 2o57_A          143 EIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRI-KLHDMGSLGLYRSLA  221 (297)
T ss_dssp             SCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHH-TCSSCCCHHHHHHHH
T ss_pred             cCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHh-cCCCCCCHHHHHHHH
Confidence            9999899999999999999999999999999999999999999998765332222122222221 233467999999999


Q ss_pred             HhCCCcEEEEEE
Q 019957          310 TSCGLTNYTSKV  321 (333)
Q Consensus       310 ~~aGf~~v~~~~  321 (333)
                      +++||++++...
T Consensus       222 ~~aGf~~~~~~~  233 (297)
T 2o57_A          222 KECGLVTLRTFS  233 (297)
T ss_dssp             HHTTEEEEEEEE
T ss_pred             HHCCCeEEEEEE
Confidence            999999988543

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.90  E-value=3.1e-22  Score=174.93  Aligned_cols=159  Identities=15%  Similarity=0.233  Sum_probs=133.5

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      ..+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.+++++...+   ..++.++.+|++.+++.+
T Consensus        11 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~   85 (239)
T 1xxl_A           11 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKG---VENVRFQQGTAESLPFPD   85 (239)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHT---CCSEEEEECBTTBCCSCT
T ss_pred             chHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcC---CCCeEEEecccccCCCCC
Confidence            4556667777889999999999999999999876  99999999999999999988766   458999999999999888


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH----hhhccCCCCCHHHHHHHHHh
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE----RILQNYNYLTEEEIEDLCTS  311 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~t~~~l~~ll~~  311 (333)
                      ++||+|++..+++|++++..+++++.++|||||.+++.++.....  +.....+..    ..+.+...++.+++..++++
T Consensus        86 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  163 (239)
T 1xxl_A           86 DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPED--PVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSA  163 (239)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSS--HHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHH
T ss_pred             CcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCC--hhHHHHHHHHHHhccccccCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999988765422  221211111    23466788999999999999


Q ss_pred             CCCcEEEEEE
Q 019957          312 CGLTNYTSKV  321 (333)
Q Consensus       312 aGf~~v~~~~  321 (333)
                      +||++++...
T Consensus       164 aGf~~~~~~~  173 (239)
T 1xxl_A          164 NQLAYQDIQK  173 (239)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCCcEEEEEe
Confidence            9999887543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.89  E-value=2.4e-22  Score=173.02  Aligned_cols=166  Identities=16%  Similarity=0.203  Sum_probs=127.8

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCC
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (333)
                      .+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+++.+++.++++..       .++.++.+|+.++++. +
T Consensus        36 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~d~~~~~~~-~  105 (220)
T 3hnr_A           36 DILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGR--TVYGIEPSREMRMIAKEKLP-------KEFSITEGDFLSFEVP-T  105 (220)
T ss_dssp             HHHHHHHHTCCSEEEEECCTTSHHHHHHHHTTC--EEEEECSCHHHHHHHHHHSC-------TTCCEESCCSSSCCCC-S
T ss_pred             HHHHHhhccCCCeEEEeCCCCCHHHHHHHhCCC--eEEEEeCCHHHHHHHHHhCC-------CceEEEeCChhhcCCC-C
Confidence            344445555778999999999999999999854  99999999999999998742       3788999999999887 8


Q ss_pred             CcceEEeccccccCCChHH--HHHHHHHhccCCcEEEEEEecccCCCcc-hhhHHHH-------HhhhccCCCCCHHHHH
Q 019957          237 FVDAVHAGAALHCWPSPSN--AVAEISRILRSGGVFVGTTFLRYTSSTS-LTGRVLR-------ERILQNYNYLTEEEIE  306 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~--~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~t~~~l~  306 (333)
                      +||+|++..+++|++++..  +|+++.++|||||.+++.++........ .....+.       ........+++.+++.
T Consensus       106 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (220)
T 3hnr_A          106 SIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQ  185 (220)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHH
T ss_pred             CeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHH
Confidence            9999999999999999977  9999999999999999998765421110 0011110       1111334677999999


Q ss_pred             HHHHhCCCcEEEEEEeCeEEEEEEeC
Q 019957          307 DLCTSCGLTNYTSKVQQSFIMFAAQK  332 (333)
Q Consensus       307 ~ll~~aGf~~v~~~~~~~~~~~~a~k  332 (333)
                      ++++++||+++......-..++.++|
T Consensus       186 ~~l~~aGf~v~~~~~~~~~w~~~~~~  211 (220)
T 3hnr_A          186 TIFENNGFHVTFTRLNHFVWVMEATK  211 (220)
T ss_dssp             HHHHHTTEEEEEEECSSSEEEEEEEE
T ss_pred             HHHHHCCCEEEEeeccceEEEEeehh
Confidence            99999999988765554444555554

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.89  E-value=3.2e-22  Score=176.28  Aligned_cols=165  Identities=13%  Similarity=0.134  Sum_probs=135.1

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC
Q 019957          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (333)
                      +......+.+...+...++.+|||||||+|.++..+++.. ..+++|+|+|+.+++.++++....++  ..++.++.+|+
T Consensus        19 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~v~~~~~d~   95 (256)
T 1nkv_A           19 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGV--SERVHFIHNDA   95 (256)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCC
T ss_pred             CCCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC--CcceEEEECCh
Confidence            4445566777777777788899999999999999999875 45999999999999999999888764  46899999999


Q ss_pred             CCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHh--hhccCCCCCHHHHH
Q 019957          229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER--ILQNYNYLTEEEIE  306 (333)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~t~~~l~  306 (333)
                      .++++ +++||+|++..+++|++++..+|+++.++|||||++++.++........   ..+...  ...+..+++.+++.
T Consensus        96 ~~~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  171 (256)
T 1nkv_A           96 AGYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPAT---EEIAQACGVSSTSDFLTLPGLV  171 (256)
T ss_dssp             TTCCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSS---HHHHHTTTCSCGGGSCCHHHHH
T ss_pred             HhCCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCCh---HHHHHHHhcccccccCCHHHHH
Confidence            99887 7899999999999999999999999999999999999998764322111   111111  12345788999999


Q ss_pred             HHHHhCCCcEEEEE
Q 019957          307 DLCTSCGLTNYTSK  320 (333)
Q Consensus       307 ~ll~~aGf~~v~~~  320 (333)
                      .+++++||++++..
T Consensus       172 ~~l~~aGf~~~~~~  185 (256)
T 1nkv_A          172 GAFDDLGYDVVEMV  185 (256)
T ss_dssp             HHHHTTTBCCCEEE
T ss_pred             HHHHHCCCeeEEEE
Confidence            99999999987743

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.89  E-value=5.2e-22  Score=175.62  Aligned_cols=165  Identities=16%  Similarity=0.209  Sum_probs=134.3

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC
Q 019957          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (333)
                      +......+.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++...     ..++.++.+|+
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~  111 (266)
T 3ujc_A           38 SGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSG-----NNKIIFEANDI  111 (266)
T ss_dssp             TTHHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCS-----CTTEEEEECCT
T ss_pred             cchHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhc-----CCCeEEEECcc
Confidence            3444555666777777778899999999999999999974 44999999999999999986543     25899999999


Q ss_pred             CCCCCCCCCcceEEeccccccC--CChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH-hhhccCCCCCHHHH
Q 019957          229 CRLPFASGFVDAVHAGAALHCW--PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-RILQNYNYLTEEEI  305 (333)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~l  305 (333)
                      .++++++++||+|++..+++|+  .++..+++++.++|||||.+++.++.... ...+ ...+.. ....+..+++.+++
T Consensus       112 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~  189 (266)
T 3ujc_A          112 LTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATE-KENW-DDEFKEYVKQRKYTLITVEEY  189 (266)
T ss_dssp             TTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESC-GGGC-CHHHHHHHHHHTCCCCCHHHH
T ss_pred             ccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCC-cccc-hHHHHHHHhcCCCCCCCHHHH
Confidence            9999888999999999999999  88899999999999999999999987653 1122 222222 22356778999999


Q ss_pred             HHHHHhCCCcEEEEEE
Q 019957          306 EDLCTSCGLTNYTSKV  321 (333)
Q Consensus       306 ~~ll~~aGf~~v~~~~  321 (333)
                      ..+++++||++++...
T Consensus       190 ~~~l~~~Gf~~~~~~~  205 (266)
T 3ujc_A          190 ADILTACNFKNVVSKD  205 (266)
T ss_dssp             HHHHHHTTCEEEEEEE
T ss_pred             HHHHHHcCCeEEEEEe
Confidence            9999999999988543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.88  E-value=1.8e-21  Score=171.51  Aligned_cols=165  Identities=16%  Similarity=0.209  Sum_probs=133.6

Q ss_pred             CCcHHHHHHHHHhhc-ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc
Q 019957          149 PGPDEEFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (333)
                      +........+...+. ..++.+|||||||+|.++..+++.++ .+++|+|+|+.+++.++++....++  ..++.++.+|
T Consensus        28 ~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~~d  104 (257)
T 3f4k_A           28 PGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKANC--ADRVKGITGS  104 (257)
T ss_dssp             SCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECC
T ss_pred             CCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECC
Confidence            444555566666663 45677999999999999999999975 3999999999999999999988775  4569999999


Q ss_pred             CCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCc-chhhHHHHHhhhccCCCCCHHHHH
Q 019957          228 VCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGRVLRERILQNYNYLTEEEIE  306 (333)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~t~~~l~  306 (333)
                      +..+|+++++||+|++..+++|+ ++..+++++.++|||||++++.++....... ......|..   .....++.+++.
T Consensus       105 ~~~~~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  180 (257)
T 3f4k_A          105 MDNLPFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMD---AYPEISVIPTCI  180 (257)
T ss_dssp             TTSCSSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHH---HCTTCCBHHHHH
T ss_pred             hhhCCCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHH---hCCCCCCHHHHH
Confidence            99999888999999999999999 8999999999999999999999976432211 112222322   223467999999


Q ss_pred             HHHHhCCCcEEEEE
Q 019957          307 DLCTSCGLTNYTSK  320 (333)
Q Consensus       307 ~ll~~aGf~~v~~~  320 (333)
                      .+++++||+++...
T Consensus       181 ~~l~~aGf~~v~~~  194 (257)
T 3f4k_A          181 DKMERAGYTPTAHF  194 (257)
T ss_dssp             HHHHHTTEEEEEEE
T ss_pred             HHHHHCCCeEEEEE
Confidence            99999999998854

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.88  E-value=1.3e-21  Score=173.63  Aligned_cols=166  Identities=16%  Similarity=0.210  Sum_probs=134.8

Q ss_pred             CCcHHHHHHHHHhhc-ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc
Q 019957          149 PGPDEEFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (333)
                      +........+...+. ..++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.+++++...++  .+++.++.+|
T Consensus        28 ~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d  104 (267)
T 3kkz_A           28 PGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGL--QNRVTGIVGS  104 (267)
T ss_dssp             SCCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECC
T ss_pred             CCCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCC--CcCcEEEEcC
Confidence            344555566666665 456789999999999999999998 466999999999999999999988775  5679999999


Q ss_pred             CCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCc-chhhHHHHHhhhccCCCCCHHHHH
Q 019957          228 VCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGRVLRERILQNYNYLTEEEIE  306 (333)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~t~~~l~  306 (333)
                      +.++++++++||+|++..+++|+ ++..+++++.++|||||++++.++....... ......|..   ....+.+.+++.
T Consensus       105 ~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  180 (267)
T 3kkz_A          105 MDDLPFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMD---AYPEIDTIPNQV  180 (267)
T ss_dssp             TTSCCCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHH---HCTTCEEHHHHH
T ss_pred             hhhCCCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHH---hCCCCCCHHHHH
Confidence            99999888999999999999999 8999999999999999999999976432211 112222322   233577999999


Q ss_pred             HHHHhCCCcEEEEEE
Q 019957          307 DLCTSCGLTNYTSKV  321 (333)
Q Consensus       307 ~ll~~aGf~~v~~~~  321 (333)
                      ++++++||++++...
T Consensus       181 ~~l~~aGf~~v~~~~  195 (267)
T 3kkz_A          181 AKIHKAGYLPVATFI  195 (267)
T ss_dssp             HHHHHTTEEEEEEEE
T ss_pred             HHHHHCCCEEEEEEE
Confidence            999999999988644

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.88  E-value=8.5e-22  Score=172.30  Aligned_cols=154  Identities=13%  Similarity=0.113  Sum_probs=122.4

Q ss_pred             HHHHhhc-ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          157 MAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       157 ~~~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      .+.+.+. ..++.+|||||||+|.++..+++.++  +++|+|+|+.+++.++++..       .++.++.+|+.++ +.+
T Consensus        32 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~-------~~v~~~~~d~~~~-~~~  101 (250)
T 2p7i_A           32 FMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLK-------DGITYIHSRFEDA-QLP  101 (250)
T ss_dssp             HHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSC-------SCEEEEESCGGGC-CCS
T ss_pred             HHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhh-------CCeEEEEccHHHc-CcC
Confidence            3444443 24567999999999999999999876  89999999999999998632       1799999999887 457


Q ss_pred             CCcceEEeccccccCCChHHHHHHHH-HhccCCcEEEEEEecccCCCcch------hhHH----HHHhhhccCCCCCHHH
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEIS-RILRSGGVFVGTTFLRYTSSTSL------TGRV----LRERILQNYNYLTEEE  304 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~-r~LkpgG~l~i~~~~~~~~~~~~------~~~~----~~~~~~~~~~~~t~~~  304 (333)
                      ++||+|++.+++||++++..+|+++. ++|||||++++.+++........      +...    .......|..+++.++
T Consensus       102 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (250)
T 2p7i_A          102 RRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDT  181 (250)
T ss_dssp             SCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHH
T ss_pred             CcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHH
Confidence            89999999999999999999999999 99999999999998764210000      0000    0111336677899999


Q ss_pred             HHHHHHhCCCcEEEEE
Q 019957          305 IEDLCTSCGLTNYTSK  320 (333)
Q Consensus       305 l~~ll~~aGf~~v~~~  320 (333)
                      +.++++++||++++..
T Consensus       182 ~~~~l~~~Gf~~~~~~  197 (250)
T 2p7i_A          182 LERDASRAGLQVTYRS  197 (250)
T ss_dssp             HHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHCCCeEEEEe
Confidence            9999999999998853

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.88  E-value=2e-21  Score=176.62  Aligned_cols=160  Identities=16%  Similarity=0.086  Sum_probs=131.1

Q ss_pred             HHHHHhhc-ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957          156 KMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (333)
Q Consensus       156 ~~~~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (333)
                      +.+.+.+. ..++.+|||||||+|.++..+++.. ..+|+|+|+++.+++.|++++...++  ..++.++.+|+.++++.
T Consensus       106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~  182 (312)
T 3vc1_A          106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRI--DDHVRSRVCNMLDTPFD  182 (312)
T ss_dssp             HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTSCCCC
T ss_pred             HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC--CCceEEEECChhcCCCC
Confidence            45566666 5678899999999999999999883 34999999999999999999988775  56899999999999988


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcch--hhHHHHHhhhccCCCCCHHHHHHHHHhC
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL--TGRVLRERILQNYNYLTEEEIEDLCTSC  312 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~t~~~l~~ll~~a  312 (333)
                      +++||+|++..+++|+ ++..+++++.++|||||++++.++.........  ....+...  ....+++.+++.++++++
T Consensus       183 ~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~~l~~a  259 (312)
T 3vc1_A          183 KGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAH--FECNIHSRREYLRAMADN  259 (312)
T ss_dssp             TTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHH--HTCCCCBHHHHHHHHHTT
T ss_pred             CCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhh--hcCCCCCHHHHHHHHHHC
Confidence            8999999999999999 699999999999999999999998765422111  11222211  233578999999999999


Q ss_pred             CCcEEEEEE
Q 019957          313 GLTNYTSKV  321 (333)
Q Consensus       313 Gf~~v~~~~  321 (333)
                      ||++++...
T Consensus       260 Gf~~~~~~~  268 (312)
T 3vc1_A          260 RLVPHTIVD  268 (312)
T ss_dssp             TEEEEEEEE
T ss_pred             CCEEEEEEe
Confidence            999888654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.88  E-value=4.8e-22  Score=176.66  Aligned_cols=179  Identities=23%  Similarity=0.390  Sum_probs=125.7

Q ss_pred             eecccCCCccccccCCCCccccccccCceeeCCCCccccCcCCceeeecccCCCCcCCCCccccccccCcchhHHHHhhH
Q 019957           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGW  139 (333)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~  139 (333)
                      .+.||.|++.+....           +.++|.+|+..+...+||++++......... . ....+.+        .   .
T Consensus         2 ~~~Cp~C~~~~~~~~-----------~~~~C~~~~~~~~~~~Gy~~~~~~~~~~~~~-~-~~~~~~~--------~---~   57 (269)
T 1p91_A            2 SFSCPLCHQPLSREK-----------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRD-P-GDSAEMM--------Q---A   57 (269)
T ss_dssp             CBBCTTTCCBCEEET-----------TEEECTTCCEEEBCTTSCEECSCSSSSCSCC-C-SSSHHHH--------H---H
T ss_pred             cccCCCCCccceeCC-----------CEEECCCCCcCCcCCCEEEEeecccccCCCC-C-CCCHHHH--------H---H
Confidence            378999999875533           3789999998888889999988653211100 0 0000000        0   0


Q ss_pred             HhhcccCCCCC--cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCC
Q 019957          140 RQNFNRSGFPG--PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL  217 (333)
Q Consensus       140 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~  217 (333)
                      +..+...+++.  .....+.+...+. .++.+|||||||+|.++..+++..+..+++|+|+|+.+++.++++        
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~--------  128 (269)
T 1p91_A           58 RRAFLDAGHYQPLRDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR--------  128 (269)
T ss_dssp             HHHHHTTTTTHHHHHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH--------
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHh--------
Confidence            11122222211  1112233333322 457799999999999999999985556999999999999999886        


Q ss_pred             CCCeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957          218 TSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       218 ~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      ..++.++.+|+..+++.+++||+|++..+..       .++++.++|||||.+++.++...
T Consensus       129 ~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~-------~l~~~~~~L~pgG~l~~~~~~~~  182 (269)
T 1p91_A          129 YPQVTFCVASSHRLPFSDTSMDAIIRIYAPC-------KAEELARVVKPGGWVITATPGPR  182 (269)
T ss_dssp             CTTSEEEECCTTSCSBCTTCEEEEEEESCCC-------CHHHHHHHEEEEEEEEEEEECTT
T ss_pred             CCCcEEEEcchhhCCCCCCceeEEEEeCChh-------hHHHHHHhcCCCcEEEEEEcCHH
Confidence            4578899999999998889999999976633       48999999999999999998763

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.88  E-value=1.2e-21  Score=168.77  Aligned_cols=164  Identities=15%  Similarity=0.094  Sum_probs=126.3

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC--CCCCeEEEEccCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRL  231 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~--~~~~i~~~~~d~~~l  231 (333)
                      ..+.+.+.+...++.+|||||||+|.++..+++.++..+++|+|+|+.+++.+++++...++.  ...++.++.+|+...
T Consensus        17 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~   96 (219)
T 3jwg_A           17 RLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR   96 (219)
T ss_dssp             HHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC
T ss_pred             HHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc
Confidence            345666667666788999999999999999999886679999999999999999988765420  012799999999888


Q ss_pred             CCCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccC-CCcchhhHHHHHhhhccCCCCCHHHHH--
Q 019957          232 PFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYT-SSTSLTGRVLRERILQNYNYLTEEEIE--  306 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~l~--  306 (333)
                      ++.+++||+|++..+++|++++  ..+++++.++|||||+++. +++... ...+. ..........+...++.+++.  
T Consensus        97 ~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~  174 (219)
T 3jwg_A           97 DKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVS-TPNKEYNFHYGN-LFEGNLRHRDHRFEWTRKEFQTW  174 (219)
T ss_dssp             CGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEE-EEBGGGGGCCCC-T-----GGGCCTTSBCHHHHHHH
T ss_pred             ccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEE-ccchhhhhhhcc-cCcccccccCceeeecHHHHHHH
Confidence            8778899999999999999977  6899999999999995554 444321 11111 111112334677789999999  


Q ss_pred             --HHHHhCCCcEEEE
Q 019957          307 --DLCTSCGLTNYTS  319 (333)
Q Consensus       307 --~ll~~aGf~~v~~  319 (333)
                        .+++++||++...
T Consensus       175 ~~~l~~~~Gf~v~~~  189 (219)
T 3jwg_A          175 AVKVAEKYGYSVRFL  189 (219)
T ss_dssp             HHHHHHHHTEEEEEE
T ss_pred             HHHHHHHCCcEEEEE
Confidence              8899999987654

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.88  E-value=1.2e-21  Score=174.67  Aligned_cols=164  Identities=17%  Similarity=0.265  Sum_probs=132.0

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      +.+.......++.+|||||||+|.++..+++.++..+++|+|+|+.+++.+++++...+   ..++.++.+|+..+++++
T Consensus        27 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~  103 (276)
T 3mgg_A           27 KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG---IKNVKFLQANIFSLPFED  103 (276)
T ss_dssp             HHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCGGGCCSCT
T ss_pred             HHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEcccccCCCCC
Confidence            33333344456789999999999999999999877899999999999999999988876   458999999999999888


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCC----CcchhhHHHHH----hhhccCCCCCHHHHHH
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTS----STSLTGRVLRE----RILQNYNYLTEEEIED  307 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~t~~~l~~  307 (333)
                      ++||+|++..+++|++++..+++++.++|||||++++.++.....    ..+.....+..    ....+...++..++..
T Consensus       104 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  183 (276)
T 3mgg_A          104 SSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYP  183 (276)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHH
T ss_pred             CCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence            999999999999999999999999999999999999998754311    11111222211    1224456678899999


Q ss_pred             HHHhCCCcEEEEEEe
Q 019957          308 LCTSCGLTNYTSKVQ  322 (333)
Q Consensus       308 ll~~aGf~~v~~~~~  322 (333)
                      +|+++||+++++...
T Consensus       184 ~l~~aGf~~v~~~~~  198 (276)
T 3mgg_A          184 LLQESGFEKIRVEPR  198 (276)
T ss_dssp             HHHHTTCEEEEEEEE
T ss_pred             HHHHCCCCeEEEeeE
Confidence            999999999886543

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.88  E-value=5.9e-22  Score=170.45  Aligned_cols=165  Identities=12%  Similarity=0.066  Sum_probs=124.9

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC--CCCCeEEEEccCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRL  231 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~--~~~~i~~~~~d~~~l  231 (333)
                      ..+.+.+.+...++.+|||||||+|.++..+++.++..+++|+|+|+.+++.+++++...++.  ...++.++.+|+...
T Consensus        17 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~   96 (217)
T 3jwh_A           17 RMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ   96 (217)
T ss_dssp             HHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc
Confidence            446666777767788999999999999999999886679999999999999999998765530  012799999999888


Q ss_pred             CCCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHH---
Q 019957          232 PFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIE---  306 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~---  306 (333)
                      +..+++||+|++..+++|++++  ..+++++.++|||||++++..........+. ..........+...++.+++.   
T Consensus        97 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~  175 (217)
T 3jwh_A           97 DKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFAN-LPAGKLRHKDHRFEWTRSQFQNWA  175 (217)
T ss_dssp             CGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC------------CCSCBCHHHHHHHH
T ss_pred             cccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcc-cccccccccccccccCHHHHHHHH
Confidence            7777899999999999999877  7999999999999996665543221000000 000011234667789999999   


Q ss_pred             -HHHHhCCCcEEEE
Q 019957          307 -DLCTSCGLTNYTS  319 (333)
Q Consensus       307 -~ll~~aGf~~v~~  319 (333)
                       .+++++||++...
T Consensus       176 ~~~~~~~Gf~v~~~  189 (217)
T 3jwh_A          176 NKITERFAYNVQFQ  189 (217)
T ss_dssp             HHHHHHSSEEEEEC
T ss_pred             HHHHHHcCceEEEE
Confidence             9999999987653

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.87  E-value=1.1e-21  Score=175.97  Aligned_cols=151  Identities=16%  Similarity=0.165  Sum_probs=123.0

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-CCCCCcceEEecc
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAGA  245 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~~  245 (333)
                      +.+|||||||+|.++..+++.+.  +++|+|+|+.+++.+++++...++  ..++.++.+|+.+++ +.+++||+|++..
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~v~~~~  144 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAERGH--QVILCDLSAQMIDRAKQAAEAKGV--SDNMQFIHCAAQDVASHLETPVDLILFHA  144 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC-CC--GGGEEEEESCGGGTGGGCSSCEEEEEEES
T ss_pred             CCEEEEeCCcchHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CcceEEEEcCHHHhhhhcCCCceEEEECc
Confidence            57999999999999999999854  999999999999999999887764  468999999999887 7788999999999


Q ss_pred             ccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcch-hh---HHHHH-------hhhccCCCCCHHHHHHHHHhCCC
Q 019957          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL-TG---RVLRE-------RILQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-~~---~~~~~-------~~~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      +++|++++..+++++.++|||||++++.+++........ ..   ..+..       ....+..+++.+++..+++++||
T Consensus       145 ~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf  224 (285)
T 4htf_A          145 VLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGW  224 (285)
T ss_dssp             CGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTC
T ss_pred             hhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCC
Confidence            999999999999999999999999999998754210000 00   00000       11244578999999999999999


Q ss_pred             cEEEEEE
Q 019957          315 TNYTSKV  321 (333)
Q Consensus       315 ~~v~~~~  321 (333)
                      ++++...
T Consensus       225 ~v~~~~~  231 (285)
T 4htf_A          225 QIMGKTG  231 (285)
T ss_dssp             EEEEEEE
T ss_pred             ceeeeee
Confidence            9987644

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.87  E-value=2e-21  Score=169.65  Aligned_cols=154  Identities=23%  Similarity=0.318  Sum_probs=126.5

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      ..+.+...+.  ++.+|||||||+|.++..+++.+.  +++|+|+++.+++.++++..      ..++.++.+|+.++++
T Consensus        43 ~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~  112 (242)
T 3l8d_A           43 IIPFFEQYVK--KEAEVLDVGCGDGYGTYKLSRTGY--KAVGVDISEVMIQKGKERGE------GPDLSFIKGDLSSLPF  112 (242)
T ss_dssp             HHHHHHHHSC--TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHTTTC------BTTEEEEECBTTBCSS
T ss_pred             HHHHHHHHcC--CCCeEEEEcCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhcc------cCCceEEEcchhcCCC
Confidence            4455555554  577999999999999999999865  99999999999999987631      4689999999999998


Q ss_pred             CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH--hhhccCCCCCHHHHHHHHHh
Q 019957          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE--RILQNYNYLTEEEIEDLCTS  311 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~t~~~l~~ll~~  311 (333)
                      ++++||+|++..+++|++++..+++++.++|||||++++.++........   ..+..  ....+...++.+++..++++
T Consensus       113 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~  189 (242)
T 3l8d_A          113 ENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRE---NSYPRLYGKDVVCNTMMPWEFEQLVKE  189 (242)
T ss_dssp             CTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGG---GGGGGGGTCCCSSCCCCHHHHHHHHHH
T ss_pred             CCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhh---hhhhhhccccccccCCCHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999765422111   11111  22246677999999999999


Q ss_pred             CCCcEEEEE
Q 019957          312 CGLTNYTSK  320 (333)
Q Consensus       312 aGf~~v~~~  320 (333)
                      +||++++..
T Consensus       190 ~Gf~~~~~~  198 (242)
T 3l8d_A          190 QGFKVVDGI  198 (242)
T ss_dssp             TTEEEEEEE
T ss_pred             cCCEEEEee
Confidence            999998854

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.87  E-value=6.1e-22  Score=168.47  Aligned_cols=138  Identities=13%  Similarity=0.171  Sum_probs=118.8

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccc
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (333)
                      +.+|||||||+|.++..+++.+.  +++|+|+|+.+++.++++        ..++.++.+|+.++++++++||+|++..+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  111 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH--QIEGLEPATRLVELARQT--------HPSVTFHHGTITDLSDSPKRWAGLLAWYS  111 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC--CEEEECCCHHHHHHHHHH--------CTTSEEECCCGGGGGGSCCCEEEEEEESS
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHh--------CCCCeEEeCcccccccCCCCeEEEEehhh
Confidence            67999999999999999999865  999999999999999986        45799999999999888899999999999


Q ss_pred             cccCC--ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957          247 LHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       247 l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~  321 (333)
                      ++|++  ++..+++++.++|||||.+++.++.... ...+ .     ....+..+++.+++.++++++||++++...
T Consensus       112 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~-~~~~-~-----~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  181 (203)
T 3h2b_A          112 LIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPS-LEPM-Y-----HPVATAYRWPLPELAQALETAGFQVTSSHW  181 (203)
T ss_dssp             STTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSS-CEEE-C-----CSSSCEEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred             HhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCc-hhhh-h-----chhhhhccCCHHHHHHHHHHCCCcEEEEEe
Confidence            99997  8899999999999999999999987642 1111 0     112345678999999999999999988754

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.87  E-value=3.5e-21  Score=169.46  Aligned_cols=158  Identities=16%  Similarity=0.150  Sum_probs=123.4

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      ..+.+.+...++.+|||||||+|.++..+++.++ .+++|+|+|+.+++.++++..      ..++.++.+|+..+++++
T Consensus        34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~  106 (253)
T 3g5l_A           34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKTT------SPVVCYEQKAIEDIAIEP  106 (253)
T ss_dssp             HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHCC------CTTEEEEECCGGGCCCCT
T ss_pred             HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhhc------cCCeEEEEcchhhCCCCC
Confidence            4455666666788999999999999999999864 389999999999999998753      257999999999999888


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCc---chh------------hHHHHH--------h
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST---SLT------------GRVLRE--------R  292 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~---~~~------------~~~~~~--------~  292 (333)
                      ++||+|++..+++|++++..+++++.++|||||.+++.+++......   .|.            ...+..        .
T Consensus       107 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (253)
T 3g5l_A          107 DAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLG  186 (253)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETT
T ss_pred             CCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeecc
Confidence            99999999999999999999999999999999999998765420000   000            000000        0


Q ss_pred             hhccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957          293 ILQNYNYLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       293 ~~~~~~~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                      .......++.+++.++|+++||++++..
T Consensus       187 ~~~~~~~~t~~~~~~~l~~aGF~~~~~~  214 (253)
T 3g5l_A          187 EDVQKYHRTVTTYIQTLLKNGFQINSVI  214 (253)
T ss_dssp             EEEEEECCCHHHHHHHHHHTTEEEEEEE
T ss_pred             ccCccEecCHHHHHHHHHHcCCeeeeee
Confidence            0111223499999999999999998865

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.87  E-value=1.6e-21  Score=172.68  Aligned_cols=156  Identities=19%  Similarity=0.145  Sum_probs=127.1

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (333)
                      ...+.+.+.+...++.+|||||||+|.++..+++.+  .+|+|+|+|+.+++.+++         ..++.++.+|+.+++
T Consensus        21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~---------~~~~~~~~~d~~~~~   89 (261)
T 3ege_A           21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQG--LFVYAVEPSIVMRQQAVV---------HPQVEWFTGYAENLA   89 (261)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTT--CEEEEECSCHHHHHSSCC---------CTTEEEECCCTTSCC
T ss_pred             HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCC--CEEEEEeCCHHHHHHHHh---------ccCCEEEECchhhCC
Confidence            345667777776778899999999999999999854  499999999999987765         348999999999999


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH-hhhccCCCCCHHHHHHHHHh
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-RILQNYNYLTEEEIEDLCTS  311 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~l~~ll~~  311 (333)
                      +++++||+|++..+++|++++..+++++.++|| ||.+++.++........|....+.. ....+..+.+.+++. ++++
T Consensus        90 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~  167 (261)
T 3ege_A           90 LPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQE  167 (261)
T ss_dssp             SCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHH
T ss_pred             CCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHH
Confidence            988999999999999999999999999999999 9999999887654333332222221 122456678889999 9999


Q ss_pred             CCCcEEEEEE
Q 019957          312 CGLTNYTSKV  321 (333)
Q Consensus       312 aGf~~v~~~~  321 (333)
                      +||+++++..
T Consensus       168 aGF~~v~~~~  177 (261)
T 3ege_A          168 NTKRRVEAIP  177 (261)
T ss_dssp             HHCSEEEEEE
T ss_pred             cCCCceeEEE
Confidence            9999887544

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.87  E-value=1.5e-21  Score=176.87  Aligned_cols=167  Identities=15%  Similarity=0.158  Sum_probs=131.7

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHH-HhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEE
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFA-KSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~-~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (333)
                      ..++.+|||||||+|.++..++ ...+..+|+|+|+|+.+++.+++++...++  ..++.++.+|+.+++++ ++||+|+
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~-~~fD~v~  192 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL--AGQITLHRQDAWKLDTR-EGYDLLT  192 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT--GGGEEEEECCGGGCCCC-SCEEEEE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC--CCceEEEECchhcCCcc-CCeEEEE
Confidence            3467899999999999999985 445677999999999999999999887764  45699999999999887 8999999


Q ss_pred             eccccccCCChHH---HHHHHHHhccCCcEEEEEEecccCC---Ccchhh----H-------H-HHHhhhc-cCCCCCHH
Q 019957          243 AGAALHCWPSPSN---AVAEISRILRSGGVFVGTTFLRYTS---STSLTG----R-------V-LRERILQ-NYNYLTEE  303 (333)
Q Consensus       243 ~~~vl~h~~d~~~---~l~~~~r~LkpgG~l~i~~~~~~~~---~~~~~~----~-------~-~~~~~~~-~~~~~t~~  303 (333)
                      +..+++|++++..   +++++.++|||||++++.+......   ...|..    .       . +...... ...+++.+
T Consensus       193 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
T 3ocj_A          193 SNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA  272 (305)
T ss_dssp             CCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred             ECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence            9999999999976   7999999999999999988665321   111110    0       0 1111112 22568999


Q ss_pred             HHHHHHHhCCCcEEEEEE--eCeEEEEEEeCC
Q 019957          304 EIEDLCTSCGLTNYTSKV--QQSFIMFAAQKP  333 (333)
Q Consensus       304 ~l~~ll~~aGf~~v~~~~--~~~~~~~~a~kp  333 (333)
                      ++.++++++||++++...  ...+.+++++||
T Consensus       273 ~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp  304 (305)
T 3ocj_A          273 QTRAQLEEAGFTDLRFEDDRARLFPTVIARKP  304 (305)
T ss_dssp             HHHHHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred             HHHHHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence            999999999999988653  445578888887

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.86  E-value=1.4e-20  Score=168.81  Aligned_cols=160  Identities=16%  Similarity=0.161  Sum_probs=126.2

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      +.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.+++++...++  ..++.++.+|+.++|   
T Consensus        54 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~---  127 (287)
T 1kpg_A           54 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSEN--LRSKRVLLAGWEQFD---  127 (287)
T ss_dssp             HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCC--CSCEEEEESCGGGCC---
T ss_pred             HHHHHHcCCCCcCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCC--CCCeEEEECChhhCC---
Confidence            455555666678899999999999999998553 23999999999999999999887764  568999999998876   


Q ss_pred             CCcceEEeccccccC--CChHHHHHHHHHhccCCcEEEEEEecccCCCc------c------hhhHHHHHhhhccCCCCC
Q 019957          236 GFVDAVHAGAALHCW--PSPSNAVAEISRILRSGGVFVGTTFLRYTSST------S------LTGRVLRERILQNYNYLT  301 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~------~------~~~~~~~~~~~~~~~~~t  301 (333)
                      ++||+|++..+++|+  .++..+++++.++|||||.+++.++.......      +      ....++..........++
T Consensus       128 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  207 (287)
T 1kpg_A          128 EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPS  207 (287)
T ss_dssp             CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred             CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCC
Confidence            789999999999999  67899999999999999999999987642111      0      001111111223345679


Q ss_pred             HHHHHHHHHhCCCcEEEEEE
Q 019957          302 EEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       302 ~~~l~~ll~~aGf~~v~~~~  321 (333)
                      .+++.++++++||++++...
T Consensus       208 ~~~~~~~l~~aGf~~~~~~~  227 (287)
T 1kpg_A          208 IPMVQECASANGFTVTRVQS  227 (287)
T ss_dssp             HHHHHHHHHTTTCEEEEEEE
T ss_pred             HHHHHHHHHhCCcEEEEEEe
Confidence            99999999999999988644

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.86  E-value=1.4e-21  Score=161.47  Aligned_cols=139  Identities=13%  Similarity=0.202  Sum_probs=117.6

Q ss_pred             HhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcc
Q 019957          160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD  239 (333)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD  239 (333)
                      +.+...++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++        .+++.++.+|   +++.+++||
T Consensus        11 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~--------~~~v~~~~~d---~~~~~~~~D   77 (170)
T 3i9f_A           11 PNIFEGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEK--------FDSVITLSDP---KEIPDNSVD   77 (170)
T ss_dssp             HHHHSSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHH--------CTTSEEESSG---GGSCTTCEE
T ss_pred             HhcCcCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHh--------CCCcEEEeCC---CCCCCCceE
Confidence            344556678999999999999999999874  999999999999999986        4578999998   666788999


Q ss_pred             eEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~  319 (333)
                      +|++..+++|++++..+++++.++|||||++++.++.......          .+.+...++.+++.++++  ||++++.
T Consensus        78 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~--Gf~~~~~  145 (170)
T 3i9f_A           78 FILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGI----------GPPLSIRMDEKDYMGWFS--NFVVEKR  145 (170)
T ss_dssp             EEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSS----------SSCGGGCCCHHHHHHHTT--TEEEEEE
T ss_pred             EEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCcccccc----------CchHhhhcCHHHHHHHHh--CcEEEEc
Confidence            9999999999999999999999999999999999887642211          113456689999999998  9999987


Q ss_pred             EEeC
Q 019957          320 KVQQ  323 (333)
Q Consensus       320 ~~~~  323 (333)
                      ....
T Consensus       146 ~~~~  149 (170)
T 3i9f_A          146 FNPT  149 (170)
T ss_dssp             ECSS
T ss_pred             cCCC
Confidence            6544

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.86  E-value=6.6e-21  Score=163.07  Aligned_cols=148  Identities=22%  Similarity=0.320  Sum_probs=122.7

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (333)
                      ++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.++++.         ++.++.+|+..++ .+++||+|++..
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~---------~~~~~~~d~~~~~-~~~~fD~v~~~~  110 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAAGF--DVDATDGSPELAAEASRRL---------GRPVRTMLFHQLD-AIDAYDAVWAHA  110 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH---------TSCCEECCGGGCC-CCSCEEEEEECS
T ss_pred             CCCcEEEECCCCCHHHHHHHHcCC--eEEEECCCHHHHHHHHHhc---------CCceEEeeeccCC-CCCcEEEEEecC
Confidence            477999999999999999999865  9999999999999999864         4567889999888 678999999999


Q ss_pred             ccccCC--ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCC-CcEEEEEEe
Q 019957          246 ALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCG-LTNYTSKVQ  322 (333)
Q Consensus       246 vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aG-f~~v~~~~~  322 (333)
                      +++|++  ++..+|+++.++|||||++++..+........        ....+..+++.+++.++++++| |++++....
T Consensus       111 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~  182 (211)
T 3e23_A          111 CLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRD--------KLARYYNYPSEEWLRARYAEAGTWASVAVESS  182 (211)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEEC--------TTSCEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred             chhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCccccc--------ccchhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence            999998  77899999999999999999998765422111        1224567899999999999999 999886542


Q ss_pred             ---------CeEEEEEEeCC
Q 019957          323 ---------QSFIMFAAQKP  333 (333)
Q Consensus       323 ---------~~~~~~~a~kp  333 (333)
                               ..|+.++..||
T Consensus       183 ~~~~~~~~~~~wl~~~~~~~  202 (211)
T 3e23_A          183 EGKGFDQELAQFLHVSVRKP  202 (211)
T ss_dssp             EEECTTSCEEEEEEEEEECC
T ss_pred             cCCCCCCCCceEEEEEEecC
Confidence                     23677776664

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=9.4e-21  Score=167.04  Aligned_cols=153  Identities=14%  Similarity=0.117  Sum_probs=121.1

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      ..+.+.+...++.+|||||||+|.++..+++..+..+++|+|+|+.+++.++++        .+++.++.+|+.+++ .+
T Consensus        23 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~--------~~~~~~~~~d~~~~~-~~   93 (259)
T 2p35_A           23 RDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR--------LPNTNFGKADLATWK-PA   93 (259)
T ss_dssp             HHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH--------STTSEEEECCTTTCC-CS
T ss_pred             HHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh--------CCCcEEEECChhhcC-cc
Confidence            345555556677899999999999999999986666999999999999999986        457899999999988 67


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH------hh----hccCCCCCHHHH
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE------RI----LQNYNYLTEEEI  305 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~t~~~l  305 (333)
                      ++||+|++..+++|++++..+++++.++|||||.+++.++................      ..    ..+..+++.+++
T Consensus        94 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (259)
T 2p35_A           94 QKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDY  173 (259)
T ss_dssp             SCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHH
T ss_pred             CCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHH
Confidence            89999999999999999999999999999999999999976432111000111110      00    235678999999


Q ss_pred             HHHHHhCCCcEE
Q 019957          306 EDLCTSCGLTNY  317 (333)
Q Consensus       306 ~~ll~~aGf~~v  317 (333)
                      .++|+++||++.
T Consensus       174 ~~~l~~aGf~v~  185 (259)
T 2p35_A          174 FNALSPKSSRVD  185 (259)
T ss_dssp             HHHHGGGEEEEE
T ss_pred             HHHHHhcCCceE
Confidence            999999999743

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.86  E-value=1.4e-20  Score=170.18  Aligned_cols=161  Identities=13%  Similarity=0.119  Sum_probs=128.6

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (333)
Q Consensus       155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (333)
                      ++.+.+.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.++++....++  ..++.++.+|+.++   
T Consensus        61 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~---  134 (302)
T 3hem_A           61 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDS--PRRKEVRIQGWEEF---  134 (302)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCC--SSCEEEEECCGGGC---
T ss_pred             HHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEECCHHHc---
Confidence            34556666667788999999999999999999842 5999999999999999999988774  55899999999876   


Q ss_pred             CCCcceEEeccccccCCCh---------HHHHHHHHHhccCCcEEEEEEecccCCCcch------------hhHHHHHhh
Q 019957          235 SGFVDAVHAGAALHCWPSP---------SNAVAEISRILRSGGVFVGTTFLRYTSSTSL------------TGRVLRERI  293 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~---------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~------------~~~~~~~~~  293 (333)
                      +++||+|++..+++|++||         ..+++++.++|||||++++.++.........            +..++....
T Consensus       135 ~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (302)
T 3hem_A          135 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEI  214 (302)
T ss_dssp             CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred             CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhc
Confidence            6899999999999999887         7899999999999999999998764211000            001122222


Q ss_pred             hccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957          294 LQNYNYLTEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       294 ~~~~~~~t~~~l~~ll~~aGf~~v~~~~  321 (333)
                      .......+.+++..+++++||+++....
T Consensus       215 ~p~~~~~s~~~~~~~l~~aGf~~~~~~~  242 (302)
T 3hem_A          215 FPGGRLPRISQVDYYSSNAGWKVERYHR  242 (302)
T ss_dssp             CTTCCCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCCCCCCCHHHHHHHHHhCCcEEEEEEe
Confidence            2344678899999999999999988654

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.86  E-value=1.7e-20  Score=158.55  Aligned_cols=160  Identities=19%  Similarity=0.177  Sum_probs=129.1

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCC
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (333)
                      .+.+.+...++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.++++....+   ..++.++.+|+.++++ ++
T Consensus        23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~-~~   96 (199)
T 2xvm_A           23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGY--DVDAWDKNAMSIANVERIKSIEN---LDNLHTRVVDLNNLTF-DR   96 (199)
T ss_dssp             HHHHHTTTSCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT---CTTEEEEECCGGGCCC-CC
T ss_pred             HHHHHhhccCCCeEEEEcCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhCC---CCCcEEEEcchhhCCC-CC
Confidence            444555555678999999999999999998854  99999999999999999887765   4579999999999887 78


Q ss_pred             CcceEEeccccccCC--ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957          237 FVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      +||+|++..+++|++  ++..+++++.++|||||.+++.++.......         ....+...++.+++.+++++  |
T Consensus        97 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~--f  165 (199)
T 2xvm_A           97 QYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP---------CTVGFPFAFKEGELRRYYEG--W  165 (199)
T ss_dssp             CEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSC---------CCSCCSCCBCTTHHHHHTTT--S
T ss_pred             CceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcC---------CCCCCCCccCHHHHHHHhcC--C
Confidence            999999999999998  7889999999999999999887765432111         01234557899999999987  9


Q ss_pred             cEEEEEEe---------------CeEEEEEEeCC
Q 019957          315 TNYTSKVQ---------------QSFIMFAAQKP  333 (333)
Q Consensus       315 ~~v~~~~~---------------~~~~~~~a~kp  333 (333)
                      ++++....               ..+..++++||
T Consensus       166 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~arK~  199 (199)
T 2xvm_A          166 ERVKYNEDVGELHRTDANGNRIKLRFATMLARKK  199 (199)
T ss_dssp             EEEEEECCEEEEEEECTTSCEEEEEEEEEEEECC
T ss_pred             eEEEecccceEEEeecCCCCeeeEEEEEEEEecC
Confidence            88775321               13567888987

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.86  E-value=8.7e-21  Score=177.20  Aligned_cols=158  Identities=18%  Similarity=0.172  Sum_probs=125.9

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhc-----CcCCCCCeEEEEccCCCC------
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQD-----NTILTSNLALVRADVCRL------  231 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~-----~~~~~~~i~~~~~d~~~l------  231 (333)
                      ..++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.+++++...     |.....++.++.+|+.++      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            4567899999999999999998873 5679999999999999999987643     200136899999999987      


Q ss_pred             CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHh
Q 019957          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTS  311 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~  311 (333)
                      ++++++||+|++..+++|++++..+|+++.++|||||+|++.++........................++.+++.++|++
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  240 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAE  240 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHH
T ss_pred             CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHH
Confidence            88889999999999999999999999999999999999999987765332222111111122234467889999999999


Q ss_pred             CCCcEEEEEE
Q 019957          312 CGLTNYTSKV  321 (333)
Q Consensus       312 aGf~~v~~~~  321 (333)
                      +||++++...
T Consensus       241 aGF~~v~~~~  250 (383)
T 4fsd_A          241 AGFRDVRLVS  250 (383)
T ss_dssp             TTCCCEEEEE
T ss_pred             CCCceEEEEe
Confidence            9999876544

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.86  E-value=1.2e-20  Score=161.76  Aligned_cols=165  Identities=16%  Similarity=0.163  Sum_probs=123.2

Q ss_pred             HHHHHhhc-ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957          156 KMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (333)
Q Consensus       156 ~~~~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (333)
                      ..+.+.+. ..++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.+++    .+   ..++.++.+|+.++ +.
T Consensus        35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~----~~---~~~~~~~~~d~~~~-~~  104 (218)
T 3ou2_A           35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGLAD--RVTALDGSAEMIAEAGR----HG---LDNVEFRQQDLFDW-TP  104 (218)
T ss_dssp             HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHGG----GC---CTTEEEEECCTTSC-CC
T ss_pred             HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHh----cC---CCCeEEEecccccC-CC
Confidence            34444444 44567999999999999999999865  99999999999999987    22   46899999999888 67


Q ss_pred             CCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcch-hhHHHHHh------hh----ccCCCCC
Q 019957          235 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSL-TGRVLRER------IL----QNYNYLT  301 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-~~~~~~~~------~~----~~~~~~t  301 (333)
                      +++||+|++..+++|++++  ..+|+++.++|||||.+++.+++........ +.......      ..    ....+++
T Consensus       105 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (218)
T 3ou2_A          105 DRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRS  184 (218)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCC
T ss_pred             CCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCC
Confidence            8899999999999999997  7899999999999999999998764211111 00000000      00    1234789


Q ss_pred             HHHHHHHHHhCCCcEEEEEEeCeEEEEEE
Q 019957          302 EEEIEDLCTSCGLTNYTSKVQQSFIMFAA  330 (333)
Q Consensus       302 ~~~l~~ll~~aGf~~v~~~~~~~~~~~~a  330 (333)
                      .+++.++++++||++.........+..++
T Consensus       185 ~~~~~~~l~~aGf~v~~~~~~~~~~~~~~  213 (218)
T 3ou2_A          185 PAELTERLTALGWSCSVDEVHPGFLYATC  213 (218)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHCCCEEEeeeccccceEeec
Confidence            99999999999999766555544433333

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.86  E-value=1.5e-21  Score=170.63  Aligned_cols=173  Identities=16%  Similarity=0.143  Sum_probs=131.7

Q ss_pred             HHHHHHHhhccc--CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          154 EFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       154 ~~~~~~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ..+.+.+.+...  ++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.++++....+    .++.++.+|+.++
T Consensus        23 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~~~~D~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~   96 (246)
T 1y8c_A           23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQG----LKPRLACQDISNL   96 (246)
T ss_dssp             HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTT----CCCEEECCCGGGC
T ss_pred             HHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCC--cEEEEECCHHHHHHHHHHHhhcC----CCeEEEecccccC
Confidence            345555555443  678999999999999999998865  89999999999999999887654    2789999999988


Q ss_pred             CCCCCCcceEEecc-ccccC---CChHHHHHHHHHhccCCcEEEEEEecccCCCc-----chh------hHHHHH-----
Q 019957          232 PFASGFVDAVHAGA-ALHCW---PSPSNAVAEISRILRSGGVFVGTTFLRYTSST-----SLT------GRVLRE-----  291 (333)
Q Consensus       232 p~~~~~fD~V~~~~-vl~h~---~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-----~~~------~~~~~~-----  291 (333)
                      +++ ++||+|++.. +++|+   .++..+|+++.++|||||.+++.+++......     .+.      ...|..     
T Consensus        97 ~~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (246)
T 1y8c_A           97 NIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDD  175 (246)
T ss_dssp             CCS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETT
T ss_pred             Ccc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCc
Confidence            876 7999999998 99999   56678999999999999999997765421000     000      000000     


Q ss_pred             -------------------hhhccCCCCCHHHHHHHHHhCCCcEEEEEEe---------CeEEEEEEeCC
Q 019957          292 -------------------RILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ---------QSFIMFAAQKP  333 (333)
Q Consensus       292 -------------------~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~~---------~~~~~~~a~kp  333 (333)
                                         ....+.++++.+++.++|+++||++++....         ...++++++||
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~  245 (246)
T 1y8c_A          176 LVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLG  245 (246)
T ss_dssp             EEEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred             eEEEEEEEEEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEec
Confidence                               0113457889999999999999999987543         24477888886

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.86  E-value=2.3e-20  Score=172.31  Aligned_cols=173  Identities=11%  Similarity=0.151  Sum_probs=138.2

Q ss_pred             HHHHhhcccC-CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-CC
Q 019957          157 MAQEYFKSAQ-GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FA  234 (333)
Q Consensus       157 ~~~~~l~~~~-~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~  234 (333)
                      .+.+.+...+ +.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++++...++  ..++.++.+|+.+.+ +.
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~  245 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDL--GGRVEFFEKNLLDARNFE  245 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC--GGGEEEEECCTTCGGGGT
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCC--CCceEEEeCCcccCcccC
Confidence            3444444455 78999999999999999999988889999999 8899999998887664  457999999998765 13


Q ss_pred             CCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCC-cchhhHHHHHh---hhccCCCCCHHHHHHH
Q 019957          235 SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSS-TSLTGRVLRER---ILQNYNYLTEEEIEDL  308 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~t~~~l~~l  308 (333)
                      .+.||+|++.+++||++++  ..+|++++++|||||++++.++...... .+.....+.-.   ...+...++.++|+++
T Consensus       246 ~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l  325 (352)
T 3mcz_A          246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGV  325 (352)
T ss_dssp             TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHH
T ss_pred             CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHH
Confidence            4579999999999999877  7899999999999999999998765332 23222222111   1234567899999999


Q ss_pred             HHhCCCcEEEEEEeCeEEEEEEeCC
Q 019957          309 CTSCGLTNYTSKVQQSFIMFAAQKP  333 (333)
Q Consensus       309 l~~aGf~~v~~~~~~~~~~~~a~kp  333 (333)
                      ++++||++++ ...+.+.+++++||
T Consensus       326 l~~aGf~~~~-~~~g~~~l~~a~kp  349 (352)
T 3mcz_A          326 VRDAGLAVGE-RSIGRYTLLIGQRS  349 (352)
T ss_dssp             HHHTTCEEEE-EEETTEEEEEEECC
T ss_pred             HHHCCCceee-eccCceEEEEEecC
Confidence            9999999998 55677999999997

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.86  E-value=4.2e-21  Score=171.54  Aligned_cols=151  Identities=23%  Similarity=0.310  Sum_probs=122.0

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCC
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (333)
                      .+.+.+...++.+|||||||+|.++..+++.  ..+|+|+|+|+.+++.++++        .+++.++.+|+..+++ ++
T Consensus        48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~-~~  116 (279)
T 3ccf_A           48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQS--GAEVLGTDNAATMIEKARQN--------YPHLHFDVADARNFRV-DK  116 (279)
T ss_dssp             HHHHHHCCCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHH--------CTTSCEEECCTTTCCC-SS
T ss_pred             HHHHHhCCCCCCEEEEecCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHhh--------CCCCEEEECChhhCCc-CC
Confidence            3445566667789999999999999999984  45999999999999999886        3578899999999887 57


Q ss_pred             CcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH----------hhhccCCCCCHHHHH
Q 019957          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE----------RILQNYNYLTEEEIE  306 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~t~~~l~  306 (333)
                      +||+|++..+++|++|+..+++++.++|||||++++.++.... ...+ ...+..          ....+..+++.+++.
T Consensus       117 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (279)
T 3ccf_A          117 PLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGN-IKYI-LEALYNALETLGIHNPQALNPWYFPSIGEYV  194 (279)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTT-THHH-HHHHHHHHHHHTCCCGGGGCCCCCCCHHHHH
T ss_pred             CcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcc-hHHH-HHHHHHHHHhcCCccccCcCceeCCCHHHHH
Confidence            9999999999999999999999999999999999998876532 1111 111111          112345678999999


Q ss_pred             HHHHhCCCcEEEEE
Q 019957          307 DLCTSCGLTNYTSK  320 (333)
Q Consensus       307 ~ll~~aGf~~v~~~  320 (333)
                      .+++++||++++..
T Consensus       195 ~~l~~aGf~~~~~~  208 (279)
T 3ccf_A          195 NILEKQGFDVTYAA  208 (279)
T ss_dssp             HHHHHHTEEEEEEE
T ss_pred             HHHHHcCCEEEEEE
Confidence            99999999988754

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.86  E-value=2.4e-21  Score=170.36  Aligned_cols=155  Identities=9%  Similarity=0.013  Sum_probs=123.7

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCC
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (333)
                      .+...+...++.+|||||||+|.++..+++.+ ..+++|+|+|+.+++.++++...     ..++.++.+|+..++++++
T Consensus        84 ~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~~~~~  157 (254)
T 1xtp_A           84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAG-----MPVGKFILASMETATLPPN  157 (254)
T ss_dssp             HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTT-----SSEEEEEESCGGGCCCCSS
T ss_pred             HHHHhhcccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhcc-----CCceEEEEccHHHCCCCCC
Confidence            34444455567899999999999999998886 44799999999999999987654     2579999999999988888


Q ss_pred             CcceEEeccccccCC--ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957          237 FVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      +||+|++..+++|++  ++..+|+++.++|||||++++.++......  +..     ....+..+++.+++.++++++||
T Consensus       158 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~l~~aGf  230 (254)
T 1xtp_A          158 TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR--FLV-----DKEDSSLTRSDIHYKRLFNESGV  230 (254)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC--EEE-----ETTTTEEEBCHHHHHHHHHHHTC
T ss_pred             CeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc--cee-----cccCCcccCCHHHHHHHHHHCCC
Confidence            999999999999995  478999999999999999999986432111  100     11133446799999999999999


Q ss_pred             cEEEEEEeCe
Q 019957          315 TNYTSKVQQS  324 (333)
Q Consensus       315 ~~v~~~~~~~  324 (333)
                      ++++......
T Consensus       231 ~~~~~~~~~~  240 (254)
T 1xtp_A          231 RVVKEAFQEE  240 (254)
T ss_dssp             CEEEEEECTT
T ss_pred             EEEEeeecCC
Confidence            9998765443

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.86  E-value=4.5e-20  Score=170.89  Aligned_cols=173  Identities=14%  Similarity=0.137  Sum_probs=137.9

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (333)
Q Consensus       155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (333)
                      .+.+.+.+...++.+|||||||+|.++..+++.++..+++++|+ +.+++.+++++...++  ..++.++.+|+.+.+++
T Consensus       179 ~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~  255 (359)
T 1x19_A          179 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV--ADRMRGIAVDIYKESYP  255 (359)
T ss_dssp             HHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC--TTTEEEEECCTTTSCCC
T ss_pred             HHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCC--CCCEEEEeCccccCCCC
Confidence            34555555556678999999999999999999988889999999 9999999999887764  45699999999887765


Q ss_pred             CCCcceEEeccccccCCC--hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhh--h----ccCCCCCHHHHH
Q 019957          235 SGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI--L----QNYNYLTEEEIE  306 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~t~~~l~  306 (333)
                      +  +|+|++..++||+++  ..++|++++++|||||++++.++..+....+.....+ ...  .    ....+++.++|.
T Consensus       256 ~--~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~t~~e~~  332 (359)
T 1x19_A          256 E--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLS-HYILGAGMPFSVLGFKEQARYK  332 (359)
T ss_dssp             C--CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHH-HHGGGGGSSCCCCCCCCGGGHH
T ss_pred             C--CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHH-HHHHhcCCCCcccCCCCHHHHH
Confidence            4  399999999999988  6789999999999999999998776433222222222 111  1    122348999999


Q ss_pred             HHHHhCCCcEEEEEEeCeEEEEEEeCC
Q 019957          307 DLCTSCGLTNYTSKVQQSFIMFAAQKP  333 (333)
Q Consensus       307 ~ll~~aGf~~v~~~~~~~~~~~~a~kp  333 (333)
                      ++++++||++++........++.++||
T Consensus       333 ~ll~~aGf~~v~~~~~~~~~vi~a~kp  359 (359)
T 1x19_A          333 EILESLGYKDVTMVRKYDHLLVQAVKP  359 (359)
T ss_dssp             HHHHHHTCEEEEEEEETTEEEEEEECC
T ss_pred             HHHHHCCCceEEEEecCCceEEEEeCC
Confidence            999999999998766556778889987

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.86  E-value=2.1e-20  Score=167.59  Aligned_cols=162  Identities=13%  Similarity=0.150  Sum_probs=126.7

Q ss_pred             HHHHHHhh-cccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957          155 FKMAQEYF-KSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (333)
Q Consensus       155 ~~~~~~~l-~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (333)
                      ...+.+.+ ...++.+|||||||+|.++..+++..+ ..+|+|+|+|+.+++.+++++...+    .++.++.+|+.+++
T Consensus        10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~v~~~~~d~~~~~   85 (284)
T 3gu3_A           10 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP----YDSEFLEGDATEIE   85 (284)
T ss_dssp             HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS----SEEEEEESCTTTCC
T ss_pred             HHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC----CceEEEEcchhhcC
Confidence            34444444 445678999999999999999999866 3699999999999999999887643    38999999999988


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec-----cc----CCC------cchhhHHHHH-hhhcc
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL-----RY----TSS------TSLTGRVLRE-RILQN  296 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~-----~~----~~~------~~~~~~~~~~-~~~~~  296 (333)
                      + +++||+|++..+++|++++..+++++.++|||||.+++.++.     ..    ...      ...+...+.. .....
T Consensus        86 ~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (284)
T 3gu3_A           86 L-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNG  164 (284)
T ss_dssp             C-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTC
T ss_pred             c-CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhc
Confidence            7 469999999999999999999999999999999999999987     11    000      1111222221 11234


Q ss_pred             CCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957          297 YNYLTEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       297 ~~~~t~~~l~~ll~~aGf~~v~~~~  321 (333)
                      ..+.+.+++..+++++||+.++...
T Consensus       165 ~~~~~~~~l~~~l~~aGF~~v~~~~  189 (284)
T 3gu3_A          165 KDGNIGMKIPIYLSELGVKNIECRV  189 (284)
T ss_dssp             CCTTGGGTHHHHHHHTTCEEEEEEE
T ss_pred             ccccHHHHHHHHHHHcCCCeEEEEE
Confidence            4566778999999999999988644

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.85  E-value=9.7e-21  Score=165.41  Aligned_cols=153  Identities=13%  Similarity=0.171  Sum_probs=122.4

Q ss_pred             HHHHHHHhhcc-cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-
Q 019957          154 EFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-  231 (333)
Q Consensus       154 ~~~~~~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-  231 (333)
                      ..+.+...+.. .++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.+++           ++.++.+|+.+. 
T Consensus        28 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~-----------~~~~~~~d~~~~~   94 (240)
T 3dli_A           28 VKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGI--ESIGVDINEDMIKFCEG-----------KFNVVKSDAIEYL   94 (240)
T ss_dssp             HHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTC--CEEEECSCHHHHHHHHT-----------TSEEECSCHHHHH
T ss_pred             HHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCC--cEEEEECCHHHHHHHHh-----------hcceeeccHHHHh
Confidence            33444444442 3568999999999999999999865  89999999999999886           277888998775 


Q ss_pred             -CCCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHH
Q 019957          232 -PFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDL  308 (333)
Q Consensus       232 -p~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~l  308 (333)
                       ++++++||+|++..+++|++++  ..+++++.++|||||++++.+++.... ..+ ...  ...+.+..+++.+++..+
T Consensus        95 ~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~-~~~--~~~~~~~~~~~~~~l~~~  170 (240)
T 3dli_A           95 KSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL-YSL-INF--YIDPTHKKPVHPETLKFI  170 (240)
T ss_dssp             HTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH-HHH-HHH--TTSTTCCSCCCHHHHHHH
T ss_pred             hhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh-HHH-HHH--hcCccccccCCHHHHHHH
Confidence             7778999999999999999966  899999999999999999999875321 111 111  123467788999999999


Q ss_pred             HHhCCCcEEEEEEeC
Q 019957          309 CTSCGLTNYTSKVQQ  323 (333)
Q Consensus       309 l~~aGf~~v~~~~~~  323 (333)
                      ++++||++++.....
T Consensus       171 l~~aGf~~~~~~~~~  185 (240)
T 3dli_A          171 LEYLGFRDVKIEFFE  185 (240)
T ss_dssp             HHHHTCEEEEEEEEC
T ss_pred             HHHCCCeEEEEEEec
Confidence            999999998866544

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.85  E-value=2.3e-20  Score=161.85  Aligned_cols=152  Identities=20%  Similarity=0.252  Sum_probs=123.6

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC--CCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADVCRLPFASGFVDAVHA  243 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~--~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (333)
                      ++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++....++.  ...++.++.+|+..+++.+++||+|++
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  107 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGY--SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM  107 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence            577999999999999999999854  9999999999999999988765431  013689999999999988899999999


Q ss_pred             ccccccCCChH---HHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhh-------------------hccCCCCC
Q 019957          244 GAALHCWPSPS---NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI-------------------LQNYNYLT  301 (333)
Q Consensus       244 ~~vl~h~~d~~---~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~t  301 (333)
                      ..+++|++++.   .+++++.++|||||++++.++..... .+.+...+....                   ..+.++++
T Consensus       108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (235)
T 3sm3_A          108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWH-LKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFT  186 (235)
T ss_dssp             ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTT-SHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBC
T ss_pred             cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchh-HHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCC
Confidence            99999999998   89999999999999999999876422 222122211111                   12346899


Q ss_pred             HHHHHHHHHhCCCcEEEEE
Q 019957          302 EEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       302 ~~~l~~ll~~aGf~~v~~~  320 (333)
                      .+++.++++++||++++..
T Consensus       187 ~~~l~~ll~~aGf~~~~~~  205 (235)
T 3sm3_A          187 EKELVFLLTDCRFEIDYFR  205 (235)
T ss_dssp             HHHHHHHHHTTTEEEEEEE
T ss_pred             HHHHHHHHHHcCCEEEEEE
Confidence            9999999999999998864

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.85  E-value=1.7e-20  Score=161.68  Aligned_cols=147  Identities=20%  Similarity=0.325  Sum_probs=121.2

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccc
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (333)
                      +.+|||||||+|.++..+...      +|+|+|+.+++.++++          ++.++.+|+..+++.+++||+|++..+
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~----------~~~~~~~d~~~~~~~~~~fD~v~~~~~  111 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR----------GVFVLKGTAENLPLKDESFDFALMVTT  111 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT----------TCEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc----------CCEEEEcccccCCCCCCCeeEEEEcch
Confidence            779999999999999887653      9999999999999873          578999999999888889999999999


Q ss_pred             cccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH-----hhhccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957          247 LHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-----RILQNYNYLTEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       247 l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~  321 (333)
                      ++|++++..+|+++.++|||||.+++.++......    ...+..     ....+..+++.+++.++++++||++++...
T Consensus       112 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~  187 (219)
T 1vlm_A          112 ICFVDDPERALKEAYRILKKGGYLIVGIVDRESFL----GREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ  187 (219)
T ss_dssp             GGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHH----HHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             HhhccCHHHHHHHHHHHcCCCcEEEEEEeCCccHH----HHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEec
Confidence            99999999999999999999999999998754211    111111     112456779999999999999999988643


Q ss_pred             eC--------------------eEEEEEEeCC
Q 019957          322 QQ--------------------SFIMFAAQKP  333 (333)
Q Consensus       322 ~~--------------------~~~~~~a~kp  333 (333)
                      ..                    .|+++.|+|.
T Consensus       188 ~~~~~p~~~~~~~~~~~~~~~~~~~~i~a~K~  219 (219)
T 1vlm_A          188 TLFKHPSELSEIEPVKEGYGEGAFVVIRGTKK  219 (219)
T ss_dssp             ECCSCGGGCSSCCCCEESSSSSSEEEEEEECC
T ss_pred             ccCCCCCccccchhhhcCCCCCeEEEEEecCC
Confidence            21                    5888888874

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.85  E-value=7.4e-21  Score=171.20  Aligned_cols=149  Identities=9%  Similarity=0.075  Sum_probs=110.8

Q ss_pred             cCCCeEEEEcCCcCHHHH----HHHHhCCCCeE--EEEeCCHHHHHHHHHHHHhcCcCCCCCeE--EEEccCCCCC----
Q 019957          165 AQGGLLVDVSCGSGLFSR----KFAKSGTYSGV--VALDFSENMLRQCYDFIKQDNTILTSNLA--LVRADVCRLP----  232 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~----~l~~~~~~~~v--~g~D~s~~~~~~a~~~~~~~~~~~~~~i~--~~~~d~~~lp----  232 (333)
                      .++.+|||||||+|.++.    .+...++...+  +|+|+|+.|++.+++++...+.  ..++.  +..+++++++    
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~  128 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSN--LENVKFAWHKETSSEYQSRML  128 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSS--CTTEEEEEECSCHHHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccC--CCcceEEEEecchhhhhhhhc
Confidence            356799999999997654    34444555544  9999999999999998765321  23444  4455555443    


Q ss_pred             --CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhh-----hccCCCCCHHHH
Q 019957          233 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI-----LQNYNYLTEEEI  305 (333)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~t~~~l  305 (333)
                        +.+++||+|++..++||++|+..+|++++++|||||++++........   + ...+....     ..+..+++.+++
T Consensus       129 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~  204 (292)
T 2aot_A          129 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSG---W-DKLWKKYGSRFPQDDLCQYITSDDL  204 (292)
T ss_dssp             TTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSH---H-HHHHHHHGGGSCCCTTCCCCCHHHH
T ss_pred             cccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCcc---H-HHHHHHHHHhccCCCcccCCCHHHH
Confidence              557899999999999999999999999999999999999987654321   1 22222211     135678999999


Q ss_pred             HHHHHhCCCcEEEE
Q 019957          306 EDLCTSCGLTNYTS  319 (333)
Q Consensus       306 ~~ll~~aGf~~v~~  319 (333)
                      ..+|+++||+++..
T Consensus       205 ~~~l~~aGf~~~~~  218 (292)
T 2aot_A          205 TQMLDNLGLKYECY  218 (292)
T ss_dssp             HHHHHHHTCCEEEE
T ss_pred             HHHHHHCCCceEEE
Confidence            99999999998764

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.85  E-value=2e-20  Score=162.77  Aligned_cols=138  Identities=14%  Similarity=0.156  Sum_probs=115.9

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccc
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (333)
                      +.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.++++....+.  ..++.++.+|+.+++. +++||+|++..+
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~-~~~fD~v~~~~~  141 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMASPER--FVVGLDISESALAKANETYGSSPK--AEYFSFVKEDVFTWRP-TELFDLIFDYVF  141 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCBTTE--EEEEECSCHHHHHHHHHHHTTSGG--GGGEEEECCCTTTCCC-SSCEEEEEEESS
T ss_pred             CCCEEEeCCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHhhccCC--CcceEEEECchhcCCC-CCCeeEEEEChh
Confidence            45999999999999999987654  899999999999999998876432  4579999999998773 569999999999


Q ss_pred             cccCC--ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957          247 LHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       247 l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~  321 (333)
                      ++|++  ++..+++++.++|||||++++.++.....            ...+...++.+++..+++++||++++...
T Consensus       142 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  206 (235)
T 3lcc_A          142 FCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDH------------VGGPPYKVDVSTFEEVLVPIGFKAVSVEE  206 (235)
T ss_dssp             TTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCC------------CSCSSCCCCHHHHHHHHGGGTEEEEEEEE
T ss_pred             hhcCCHHHHHHHHHHHHHHCCCCcEEEEEEeccccc------------CCCCCccCCHHHHHHHHHHcCCeEEEEEe
Confidence            99998  88899999999999999999988654311            11233458999999999999999988643

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.85  E-value=4.5e-21  Score=169.80  Aligned_cols=157  Identities=20%  Similarity=0.197  Sum_probs=120.2

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (333)
                      ++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.++++        ..++.++.+|+.++++ +++||+|++..
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~-~~~fD~v~~~~  118 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRR--------NPDAVLHHGDMRDFSL-GRRFSAVTCMF  118 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHH--------CTTSEEEECCTTTCCC-SCCEEEEEECT
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhh--------CCCCEEEECChHHCCc-cCCcCEEEEcC
Confidence            457999999999999999999876  999999999999999986        4478999999999887 78999999998


Q ss_pred             -ccccCC---ChHHHHHHHHHhccCCcEEEEEEecccCCCcch-------------hhH---------------HH----
Q 019957          246 -ALHCWP---SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL-------------TGR---------------VL----  289 (333)
Q Consensus       246 -vl~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-------------~~~---------------~~----  289 (333)
                       +++|++   +...+|+++.++|||||++++.++..+....+.             +..               .+    
T Consensus       119 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (263)
T 3pfg_A          119 SSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAG  198 (263)
T ss_dssp             TGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             chhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEec
Confidence             999996   445789999999999999999754332111000             000               00    


Q ss_pred             -----HH-hhhccCCCCCHHHHHHHHHhCCCcEEEEEEe-CeEEEEEEeCC
Q 019957          290 -----RE-RILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ-QSFIMFAAQKP  333 (333)
Q Consensus       290 -----~~-~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~~-~~~~~~~a~kp  333 (333)
                           .. ....+.++|+.+++.++|+++||+++++... ....+++++||
T Consensus       199 ~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K~  249 (263)
T 3pfg_A          199 PDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLPG  249 (263)
T ss_dssp             TTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEEC
T ss_pred             CCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEecC
Confidence                 00 0012366899999999999999999886332 22356777775

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.85  E-value=4.8e-20  Score=160.83  Aligned_cols=158  Identities=21%  Similarity=0.189  Sum_probs=123.8

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      ..+...+...++.+|||||||+|.++..+++.+ ..+++|+|+|+.+++.++++..      ..++.++.+|+..+++++
T Consensus        33 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~  105 (243)
T 3bkw_A           33 PALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARARAAGP------DTGITYERADLDKLHLPQ  105 (243)
T ss_dssp             HHHHHHSCCCTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTSC------SSSEEEEECCGGGCCCCT
T ss_pred             HHHHHhccccCCCEEEEEcCcCCHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHhcc------cCCceEEEcChhhccCCC
Confidence            456666666678899999999999999999885 3489999999999999988643      236899999999988888


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccC--C-Ccchh-----------h---------HHHHHh
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT--S-STSLT-----------G---------RVLRER  292 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~--~-~~~~~-----------~---------~~~~~~  292 (333)
                      ++||+|++..+++|++++..+++++.++|||||++++.+++...  . ...|.           .         ..+.. 
T Consensus       106 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  184 (243)
T 3bkw_A          106 DSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLA-  184 (243)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHH-
T ss_pred             CCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeecc-
Confidence            89999999999999999999999999999999999998865320  0 00000           0         00100 


Q ss_pred             hhccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957          293 ILQNYNYLTEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       293 ~~~~~~~~t~~~l~~ll~~aGf~~v~~~~  321 (333)
                      ...+..+++.+++.++|+++||++++...
T Consensus       185 ~~~~~~~~t~~~~~~~l~~aGF~~~~~~~  213 (243)
T 3bkw_A          185 KGVVKHHRTVGTTLNALIRSGFAIEHVEE  213 (243)
T ss_dssp             HSCCEEECCHHHHHHHHHHTTCEEEEEEE
T ss_pred             CceEEEeccHHHHHHHHHHcCCEeeeecc
Confidence            11233447999999999999999988653

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.85  E-value=4.9e-20  Score=164.05  Aligned_cols=163  Identities=13%  Similarity=0.178  Sum_probs=127.3

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHH------HHHHHHHHHHhcCcCCCCCeEEEEcc-
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSEN------MLRQCYDFIKQDNTILTSNLALVRAD-  227 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~------~~~~a~~~~~~~~~~~~~~i~~~~~d-  227 (333)
                      ..+.+.+...++.+|||||||+|.++..+++. ++..+++|+|+|+.      +++.+++++...++  ..++.++.+| 
T Consensus        33 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~  110 (275)
T 3bkx_A           33 LAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL--GDRLTVHFNTN  110 (275)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT--GGGEEEECSCC
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCC--CCceEEEECCh
Confidence            45555666677889999999999999999988 45579999999997      99999999887653  3689999998 


Q ss_pred             --CCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHH---HH-----Hh----h
Q 019957          228 --VCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV---LR-----ER----I  293 (333)
Q Consensus       228 --~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~---~~-----~~----~  293 (333)
                        ...+|+.+++||+|++..+++|++++..+++.+.++++|||++++.++.............   +.     ..    .
T Consensus       111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (275)
T 3bkx_A          111 LSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDV  190 (275)
T ss_dssp             TTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTT
T ss_pred             hhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhcccccc
Confidence              4556677889999999999999999998777777888889999999987643221111110   11     10    1


Q ss_pred             hccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957          294 LQNYNYLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       294 ~~~~~~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                      ..+..+++.+++.++++++||++++..
T Consensus       191 ~~~~~~~s~~~l~~~l~~aGf~~~~~~  217 (275)
T 3bkx_A          191 ANIRTLITPDTLAQIAHDNTWTYTAGT  217 (275)
T ss_dssp             CSCCCCCCHHHHHHHHHHHTCEEEECC
T ss_pred             ccccccCCHHHHHHHHHHCCCeeEEEE
Confidence            234468999999999999999998743

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.85  E-value=8.2e-21  Score=161.89  Aligned_cols=147  Identities=12%  Similarity=0.092  Sum_probs=113.2

Q ss_pred             HhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc---------CCCCCeEEEEccCCC
Q 019957          160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT---------ILTSNLALVRADVCR  230 (333)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~---------~~~~~i~~~~~d~~~  230 (333)
                      ..+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|+++......         ....++.++++|+.+
T Consensus        16 ~~l~~~~~~~vLD~GCG~G~~~~~la~~g~--~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~   93 (203)
T 1pjz_A           16 SSLNVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA   93 (203)
T ss_dssp             HHHCCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred             HhcccCCCCEEEEeCCCCcHhHHHHHHCCC--eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcccc
Confidence            334445678999999999999999999875  999999999999999987643100         003579999999999


Q ss_pred             CCCCC-CCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHH
Q 019957          231 LPFAS-GFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIED  307 (333)
Q Consensus       231 lp~~~-~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~  307 (333)
                      +++.+ ++||+|++..+++|++..  ..++++++++|||||++++.+......           ........++.+++..
T Consensus        94 l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~-----------~~~~~~~~~~~~el~~  162 (203)
T 1pjz_A           94 LTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQA-----------LLEGPPFSVPQTWLHR  162 (203)
T ss_dssp             STHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSS-----------SSSSCCCCCCHHHHHH
T ss_pred             CCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcc-----------ccCCCCCCCCHHHHHH
Confidence            98765 799999999999999754  468999999999999966655433210           0111223478999999


Q ss_pred             HHHhCCCcEEEEE
Q 019957          308 LCTSCGLTNYTSK  320 (333)
Q Consensus       308 ll~~aGf~~v~~~  320 (333)
                      ++++ ||+++...
T Consensus       163 ~~~~-gf~i~~~~  174 (203)
T 1pjz_A          163 VMSG-NWEVTKVG  174 (203)
T ss_dssp             TSCS-SEEEEEEE
T ss_pred             HhcC-CcEEEEec
Confidence            9998 99987643

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.85  E-value=1.7e-19  Score=167.59  Aligned_cols=170  Identities=11%  Similarity=0.093  Sum_probs=135.9

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCC
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (333)
                      .+.+.+...+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++++...++  ..++.++.+|+. .+++. 
T Consensus       193 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l--~~~v~~~~~d~~-~~~p~-  267 (369)
T 3gwz_A          193 QVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGL--ADRCEILPGDFF-ETIPD-  267 (369)
T ss_dssp             HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC--TTTEEEEECCTT-TCCCS-
T ss_pred             HHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCc--CCceEEeccCCC-CCCCC-
Confidence            344444445678999999999999999999988889999999 9999999999888765  578999999998 45544 


Q ss_pred             CcceEEeccccccCCChH--HHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH--hhhccCCCCCHHHHHHHHHhC
Q 019957          237 FVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE--RILQNYNYLTEEEIEDLCTSC  312 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~t~~~l~~ll~~a  312 (333)
                      .||+|++..++||++++.  ++|++++++|||||+|++.++.......+. ...+.-  ........++.++|+++++++
T Consensus       268 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~-~~~~d~~~~~~~~g~~~t~~e~~~ll~~a  346 (369)
T 3gwz_A          268 GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS-TLFVDLLLLVLVGGAERSESEFAALLEKS  346 (369)
T ss_dssp             SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH-HHHHHHHHHHHHSCCCBCHHHHHHHHHTT
T ss_pred             CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc-hhHhhHHHHhhcCCccCCHHHHHHHHHHC
Confidence            899999999999999886  799999999999999999998765433332 111111  112445678999999999999


Q ss_pred             CCcEEEEEE--eCeEEEEEEeC
Q 019957          313 GLTNYTSKV--QQSFIMFAAQK  332 (333)
Q Consensus       313 Gf~~v~~~~--~~~~~~~~a~k  332 (333)
                      ||+++++..  .+.+.++.++|
T Consensus       347 Gf~~~~~~~~~~~~~svie~~~  368 (369)
T 3gwz_A          347 GLRVERSLPCGAGPVRIVEIRR  368 (369)
T ss_dssp             TEEEEEEEECSSSSEEEEEEEE
T ss_pred             CCeEEEEEECCCCCcEEEEEEe
Confidence            999999866  45566776665

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.84  E-value=5.4e-20  Score=168.53  Aligned_cols=161  Identities=17%  Similarity=0.135  Sum_probs=127.1

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++++...++  ..++.++.+|+. .+++. +||+|++.
T Consensus       168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~-~~~p~-~~D~v~~~  242 (332)
T 3i53_A          168 AALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGL--SGRAQVVVGSFF-DPLPA-GAGGYVLS  242 (332)
T ss_dssp             GGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC--TTTEEEEECCTT-SCCCC-SCSEEEEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCc--CcCeEEecCCCC-CCCCC-CCcEEEEe
Confidence            3457999999999999999999988889999999 9999999999887764  578999999996 34444 89999999


Q ss_pred             cccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEEe
Q 019957          245 AALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ  322 (333)
Q Consensus       245 ~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~~  322 (333)
                      +++||++++  .++|++++++|||||++++.++..... .+.....+..........++.++|.++++++||+++++...
T Consensus       243 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~  321 (332)
T 3i53_A          243 AVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPI  321 (332)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC----CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred             hhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-CccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEEC
Confidence            999999987  789999999999999999998766533 22111111111124456789999999999999999987765


Q ss_pred             CeEEEEEEe
Q 019957          323 QSFIMFAAQ  331 (333)
Q Consensus       323 ~~~~~~~a~  331 (333)
                      ..+.++.++
T Consensus       322 ~~~~vie~r  330 (332)
T 3i53_A          322 SYVSIVEMT  330 (332)
T ss_dssp             SSSEEEEEE
T ss_pred             CCcEEEEEe
Confidence            545555544

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.84  E-value=2.5e-20  Score=164.63  Aligned_cols=150  Identities=20%  Similarity=0.224  Sum_probs=117.8

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (333)
                      ..++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.+++++ ..+   ..++.++.+|+.++++++++||+|++
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~-~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~  110 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIARGY--RYIALDADAAMLEVFRQKI-AGV---DRKVQVVQADARAIPLPDESVHGVIV  110 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTTTC--EEEEEESCHHHHHHHHHHT-TTS---CTTEEEEESCTTSCCSCTTCEEEEEE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHh-hcc---CCceEEEEcccccCCCCCCCeeEEEE
Confidence            45678999999999999999998754  9999999999999999987 222   56899999999999988899999999


Q ss_pred             ccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH---hhh----ccCCCCCHHHHHHHHHhCCCcE
Q 019957          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE---RIL----QNYNYLTEEEIEDLCTSCGLTN  316 (333)
Q Consensus       244 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~t~~~l~~ll~~aGf~~  316 (333)
                      ..+++|++++..+++++.++|||||.+++............+...+..   ...    .+..+++.+++.++++++||++
T Consensus       111 ~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  190 (263)
T 2yqz_A          111 VHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKP  190 (263)
T ss_dssp             ESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCchhhcCCHHHHHHHHHHHCCCCcEEEEEecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCc
Confidence            999999999999999999999999999988322210110001111111   111    1345678899999999999997


Q ss_pred             EEE
Q 019957          317 YTS  319 (333)
Q Consensus       317 v~~  319 (333)
                      +..
T Consensus       191 ~~~  193 (263)
T 2yqz_A          191 RTR  193 (263)
T ss_dssp             EEE
T ss_pred             ceE
Confidence            763

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.84  E-value=4.9e-21  Score=169.80  Aligned_cols=162  Identities=19%  Similarity=0.273  Sum_probs=117.4

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC--C------------------------
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--L------------------------  217 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~--~------------------------  217 (333)
                      ..++.+|||||||+|.++..++..+ ..+|+|+|+|+.|++.|+++++.....  +                        
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            4467789999999998877766665 237999999999999999876543100  0                        


Q ss_pred             CCCeE-EEEccCCCC-CC---CCCCcceEEeccccccC-C---ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHH
Q 019957          218 TSNLA-LVRADVCRL-PF---ASGFVDAVHAGAALHCW-P---SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV  288 (333)
Q Consensus       218 ~~~i~-~~~~d~~~l-p~---~~~~fD~V~~~~vl~h~-~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~  288 (333)
                      ..++. ++.+|+.+. |+   ..++||+|+++.+|||+ +   +...++++++++|||||.|++.+........      
T Consensus       132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~------  205 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYM------  205 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE------
T ss_pred             HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccce------
Confidence            01233 889999773 43   25799999999999996 3   4468999999999999999999864321100      


Q ss_pred             HHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEEeC-----------eEEEEEEeCC
Q 019957          289 LRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQ-----------SFIMFAAQKP  333 (333)
Q Consensus       289 ~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~~~-----------~~~~~~a~kp  333 (333)
                       ..........++.+++.++|+++||++++.....           .+++++|+|+
T Consensus       206 -~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~  260 (263)
T 2a14_A          206 -VGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKK  260 (263)
T ss_dssp             -ETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred             -eCCeEeeccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEec
Confidence             0000112346799999999999999998865422           5667788875

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.84  E-value=1.2e-20  Score=164.88  Aligned_cols=145  Identities=12%  Similarity=0.143  Sum_probs=120.0

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (333)
                      ++.+|||||||+|.++..+++.+ ..+++|+|+|+.+++.+++++...+   ..++.++.+|+..+++.+++||+|++..
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~  154 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG---KRVRNYFCCGLQDFTPEPDSYDVIWIQW  154 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG---GGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcC---CceEEEEEcChhhcCCCCCCEEEEEEcc
Confidence            47899999999999999988876 5599999999999999999877653   3468999999999888888999999999


Q ss_pred             ccccCCChH--HHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEEe
Q 019957          246 ALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ  322 (333)
Q Consensus       246 vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~~  322 (333)
                      +++|++++.  .+++++.++|||||++++.++....  ...+.      ...+...++.+++.++++++||++++....
T Consensus       155 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~  225 (241)
T 2ex4_A          155 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE--GVILD------DVDSSVCRDLDVVRRIICSAGLSLLAEERQ  225 (241)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS--SEEEE------TTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC--cceec------ccCCcccCCHHHHHHHHHHcCCeEEEeeec
Confidence            999999865  8999999999999999999876542  11100      012233458999999999999999987543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.84  E-value=5.7e-20  Score=167.26  Aligned_cols=160  Identities=15%  Similarity=0.182  Sum_probs=126.0

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (333)
Q Consensus       155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (333)
                      .+.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++....++  ..++.++.+|+.+++  
T Consensus        79 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~--  153 (318)
T 2fk8_A           79 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDT--NRSRQVLLQGWEDFA--  153 (318)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCC--SSCEEEEESCGGGCC--
T ss_pred             HHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEECChHHCC--
Confidence            3455555666678899999999999999999873 23999999999999999999887764  467999999998875  


Q ss_pred             CCCcceEEeccccccC--CChHHHHHHHHHhccCCcEEEEEEecccCCCc------ch------hhHHHHHhhhccCCCC
Q 019957          235 SGFVDAVHAGAALHCW--PSPSNAVAEISRILRSGGVFVGTTFLRYTSST------SL------TGRVLRERILQNYNYL  300 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~------~~------~~~~~~~~~~~~~~~~  300 (333)
                       ++||+|++..+++|+  +++..+++++.++|||||++++.++.......      +.      ...++.........+.
T Consensus       154 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (318)
T 2fk8_A          154 -EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLP  232 (318)
T ss_dssp             -CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCC
T ss_pred             -CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCC
Confidence             689999999999999  67889999999999999999999987643111      00      0011111111234567


Q ss_pred             CHHHHHHHHHhCCCcEEEEE
Q 019957          301 TEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       301 t~~~l~~ll~~aGf~~v~~~  320 (333)
                      +.+++.++++++||++++..
T Consensus       233 s~~~~~~~l~~aGf~~~~~~  252 (318)
T 2fk8_A          233 STEMMVEHGEKAGFTVPEPL  252 (318)
T ss_dssp             CHHHHHHHHHHTTCBCCCCE
T ss_pred             CHHHHHHHHHhCCCEEEEEE
Confidence            99999999999999987743

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.84  E-value=1.1e-20  Score=162.80  Aligned_cols=166  Identities=15%  Similarity=0.153  Sum_probs=124.6

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC---C
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---P  232 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l---p  232 (333)
                      ..+...+...++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.++++         .++.+..+|+.++   +
T Consensus        42 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~~~  110 (227)
T 3e8s_A           42 QAILLAILGRQPERVLDLGCGEGWLLRALADRGI--EAVGVDGDRTLVDAARAA---------GAGEVHLASYAQLAEAK  110 (227)
T ss_dssp             HHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHT---------CSSCEEECCHHHHHTTC
T ss_pred             HHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCC--EEEEEcCCHHHHHHHHHh---------cccccchhhHHhhcccc
Confidence            3455555556678999999999999999998865  999999999999999984         4567888888665   4


Q ss_pred             CC-CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHH-----HHH----hhhccCCCCCH
Q 019957          233 FA-SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV-----LRE----RILQNYNYLTE  302 (333)
Q Consensus       233 ~~-~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~t~  302 (333)
                      +. +++||+|++..+++ ..++..+++++.++|||||++++.+++........+...     +..    ....+.++++.
T Consensus       111 ~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (227)
T 3e8s_A          111 VPVGKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTL  189 (227)
T ss_dssp             SCCCCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCH
T ss_pred             cccCCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecH
Confidence            44 44599999999999 889999999999999999999999987643221100000     110    01234566799


Q ss_pred             HHHHHHHHhCCCcEEEEEEe-------CeEEEEEEeCC
Q 019957          303 EEIEDLCTSCGLTNYTSKVQ-------QSFIMFAAQKP  333 (333)
Q Consensus       303 ~~l~~ll~~aGf~~v~~~~~-------~~~~~~~a~kp  333 (333)
                      +++.++|+++||++++....       ..-.+++++||
T Consensus       190 ~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~va~k~  227 (227)
T 3e8s_A          190 ASWLNALDMAGLRLVSLQEPQHPQSAVPQSLLMVAERH  227 (227)
T ss_dssp             HHHHHHHHHTTEEEEEEECCCCTTCSSCSCEEEEEEEC
T ss_pred             HHHHHHHHHcCCeEEEEecCCCCCCCCceeEEEEeecC
Confidence            99999999999999986431       11356667775

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.84  E-value=3.9e-20  Score=166.94  Aligned_cols=166  Identities=14%  Similarity=0.176  Sum_probs=123.4

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ......+.+.+... +.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.++++....++....++.++++|+.++
T Consensus        69 ~~~~~~~~~~~~~~-~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~  145 (299)
T 3g2m_A           69 TSEAREFATRTGPV-SGPVLELAAGMGRLTFPFLDLGW--EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF  145 (299)
T ss_dssp             HHHHHHHHHHHCCC-CSCEEEETCTTTTTHHHHHTTTC--CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC
T ss_pred             cHHHHHHHHhhCCC-CCcEEEEeccCCHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC
Confidence            33445566666544 34999999999999999999864  8999999999999999998775310015899999999999


Q ss_pred             CCCCCCcceEEec-cccccCCC--hHHHHHHHHHhccCCcEEEEEEecccCCCcchhh--HHHH----------------
Q 019957          232 PFASGFVDAVHAG-AALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG--RVLR----------------  290 (333)
Q Consensus       232 p~~~~~fD~V~~~-~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~--~~~~----------------  290 (333)
                      ++ +++||+|++. .+++|++.  ...+|+++.++|||||+|++.+++..........  ..+.                
T Consensus       146 ~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  224 (299)
T 3g2m_A          146 AL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPA  224 (299)
T ss_dssp             CC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEE
T ss_pred             Cc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEecc
Confidence            87 6899988865 66666653  4789999999999999999999876421000000  0000                


Q ss_pred             ------------------HhhhccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957          291 ------------------ERILQNYNYLTEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       291 ------------------~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~  321 (333)
                                        .....+.++|+.+++.++|+++||++++...
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~  273 (299)
T 3g2m_A          225 EEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTP  273 (299)
T ss_dssp             EEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEE
T ss_pred             ccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEe
Confidence                              0011345578999999999999999998754

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.83  E-value=1.1e-20  Score=164.47  Aligned_cols=158  Identities=20%  Similarity=0.209  Sum_probs=121.1

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEe-
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA-  243 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~-  243 (333)
                      .++.+|||+|||+|.++..+++.++  +++|+|+|+.+++.++++        ..++.++.+|+.++++ +++||+|++ 
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~-~~~~D~v~~~  107 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKR--------LPDATLHQGDMRDFRL-GRKFSAVVSM  107 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHH--------CTTCEEEECCTTTCCC-SSCEEEEEEC
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHh--------CCCCEEEECCHHHccc-CCCCcEEEEc
Confidence            4567999999999999999999876  999999999999999986        4568999999998887 679999995 


Q ss_pred             ccccccCCCh---HHHHHHHHHhccCCcEEEEEEecccCCCcchhh-----------------------------HHH-H
Q 019957          244 GAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG-----------------------------RVL-R  290 (333)
Q Consensus       244 ~~vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~-----------------------------~~~-~  290 (333)
                      ..+++|+.++   ..+++++.++|||||.+++.++.......+...                             ..+ .
T Consensus       108 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (239)
T 3bxo_A          108 FSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVA  187 (239)
T ss_dssp             TTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEe
Confidence            5599999654   688999999999999999987655322110000                             000 0


Q ss_pred             --H------hhhccCCCCCHHHHHHHHHhCCCcEEEEEEe-CeEEEEEEeCC
Q 019957          291 --E------RILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ-QSFIMFAAQKP  333 (333)
Q Consensus       291 --~------~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~~-~~~~~~~a~kp  333 (333)
                        .      ....+.++++.++++.+|+++||+++..... ....+++++||
T Consensus       188 ~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K~  239 (239)
T 3bxo_A          188 DPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVPA  239 (239)
T ss_dssp             ETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEEC
T ss_pred             cCCCcceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEecC
Confidence              0      0012446899999999999999977664332 34578888886

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.83  E-value=7.3e-20  Score=156.48  Aligned_cols=134  Identities=25%  Similarity=0.301  Sum_probs=109.4

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (333)
                      ++.+|||||||+|.++..+   + ..+++|+|+|+.+++.++++.        .++.++.+|+.++++++++||+|++..
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~-~~~v~~vD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~fD~v~~~~  103 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---P-YPQKVGVEPSEAMLAVGRRRA--------PEATWVRAWGEALPFPGESFDVVLLFT  103 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---C-CSEEEEECCCHHHHHHHHHHC--------TTSEEECCCTTSCCSCSSCEEEEEEES
T ss_pred             CCCeEEEECCCCCHhHHhC---C-CCeEEEEeCCHHHHHHHHHhC--------CCcEEEEcccccCCCCCCcEEEEEEcC
Confidence            6789999999999999887   2 238999999999999999863        478899999999998889999999999


Q ss_pred             ccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH--hhhccCCCCCHHHHHHHHHhCC
Q 019957          246 ALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE--RILQNYNYLTEEEIEDLCTSCG  313 (333)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~t~~~l~~ll~~aG  313 (333)
                      +++|++++..+++++.++|||||.+++.+++...............  ....+.++++.++++++++  |
T Consensus       104 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G  171 (211)
T 2gs9_A          104 TLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAQARFLAREDLKALLG--P  171 (211)
T ss_dssp             CTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTSHHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred             hhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcCcHHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence            9999999999999999999999999999987643211111110011  1225678899999999998  7

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.83  E-value=2.1e-19  Score=164.62  Aligned_cols=174  Identities=13%  Similarity=0.174  Sum_probs=134.2

Q ss_pred             HHHHHhhcc--cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          156 KMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       156 ~~~~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      ..+.+.+..  .++.+|||||||+|.++..+.+..+..+++++|++ .+++.+++++...++  ..++.++.+|+.+.++
T Consensus       153 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~  229 (335)
T 2r3s_A          153 QLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGV--ASRYHTIAGSAFEVDY  229 (335)
T ss_dssp             HHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTC--GGGEEEEESCTTTSCC
T ss_pred             HHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCC--CcceEEEecccccCCC
Confidence            344455554  56789999999999999999999877899999999 999999999887664  4579999999988776


Q ss_pred             CCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCC-CcchhhHHHHH---hhhccCCCCCHHHHHH
Q 019957          234 ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTS-STSLTGRVLRE---RILQNYNYLTEEEIED  307 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~t~~~l~~  307 (333)
                      ++ .||+|++.+++||++++  ..+|+++.++|||||++++.++..... ..+.....+..   ....+...++.+++.+
T Consensus       230 ~~-~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~  308 (335)
T 2r3s_A          230 GN-DYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYES  308 (335)
T ss_dssp             CS-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHH
T ss_pred             CC-CCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHH
Confidence            54 49999999999999766  689999999999999999998876432 22221211111   1112567889999999


Q ss_pred             HHHhCCCcEEEEEEe-CeEEEEEEeCC
Q 019957          308 LCTSCGLTNYTSKVQ-QSFIMFAAQKP  333 (333)
Q Consensus       308 ll~~aGf~~v~~~~~-~~~~~~~a~kp  333 (333)
                      +++++||+++++... +.+.++.+++|
T Consensus       309 ll~~aGf~~~~~~~~~~~~~~i~~~~~  335 (335)
T 2r3s_A          309 MFSNAGFSHSQLHSLPTTQQQVIVAYK  335 (335)
T ss_dssp             HHHHTTCSEEEEECCTTSSSEEEEEEC
T ss_pred             HHHHCCCCeeeEEECCCCceeEEEecC
Confidence            999999999986543 33445555544

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.83  E-value=2.9e-19  Score=166.24  Aligned_cols=171  Identities=15%  Similarity=0.181  Sum_probs=128.2

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCC
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (333)
                      .+.+.+...++.+|||||||+|.++..+.+.++..+++++|+ +.+++.+++++...++  ..++.++.+|+.+ +++. 
T Consensus       173 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~-~~~~-  247 (374)
T 1qzz_A          173 APADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL--ADRVTVAEGDFFK-PLPV-  247 (374)
T ss_dssp             HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC--TTTEEEEECCTTS-CCSC-
T ss_pred             HHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCC--CCceEEEeCCCCC-cCCC-
Confidence            344455555678999999999999999999988789999999 9999999999887764  4589999999965 3333 


Q ss_pred             CcceEEeccccccCCChH--HHHHHHHHhccCCcEEEEEEe--cccCCCcchhhHHHHHh--hhccCCCCCHHHHHHHHH
Q 019957          237 FVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTF--LRYTSSTSLTGRVLRER--ILQNYNYLTEEEIEDLCT  310 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~t~~~l~~ll~  310 (333)
                      .||+|++..++||++++.  .+|+++.++|||||++++.++  ..+....+.....+...  .......++.++|.++++
T Consensus       248 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  327 (374)
T 1qzz_A          248 TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAG  327 (374)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHH
T ss_pred             CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHH
Confidence            499999999999999885  899999999999999999887  43221111211111111  112356789999999999


Q ss_pred             hCCCcEEEEEEeCe-E-----EEEEEeC
Q 019957          311 SCGLTNYTSKVQQS-F-----IMFAAQK  332 (333)
Q Consensus       311 ~aGf~~v~~~~~~~-~-----~~~~a~k  332 (333)
                      ++||+++++...+. +     .++.++|
T Consensus       328 ~aGf~~~~~~~~~~~~~~~~~~~i~~~~  355 (374)
T 1qzz_A          328 SAGLALASERTSGSTTLPFDFSILEFTA  355 (374)
T ss_dssp             TTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred             HCCCceEEEEECCCCcccCCcEEEEEEE
Confidence            99999988755433 2     4555654

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.83  E-value=3.3e-19  Score=165.01  Aligned_cols=172  Identities=17%  Similarity=0.231  Sum_probs=132.0

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCC
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (333)
                      .+.+.+...++.+|||||||+|.++..+++.++..+++++|+ +.+++.+++++...++  ..++.++.+|+.+ +++. 
T Consensus       174 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~-~~~~-  248 (360)
T 1tw3_A          174 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL--SDRVDVVEGDFFE-PLPR-  248 (360)
T ss_dssp             HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC--TTTEEEEECCTTS-CCSS-
T ss_pred             HHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCC--CCceEEEeCCCCC-CCCC-
Confidence            344445555678999999999999999999988889999999 9999999999887764  4589999999875 3333 


Q ss_pred             CcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEec-ccCCCcchhhHHHHHh--hhccCCCCCHHHHHHHHHh
Q 019957          237 FVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFL-RYTSSTSLTGRVLRER--ILQNYNYLTEEEIEDLCTS  311 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~t~~~l~~ll~~  311 (333)
                      .||+|++..++||++++  ..+++++.++|||||++++.++. .+..........+...  ...+...++.++|.+++++
T Consensus       249 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~  328 (360)
T 1tw3_A          249 KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAAS  328 (360)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHH
T ss_pred             CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHH
Confidence            49999999999999987  48999999999999999999876 3322111212211111  1124567899999999999


Q ss_pred             CCCcEEEEEEeCe------EEEEEEeCC
Q 019957          312 CGLTNYTSKVQQS------FIMFAAQKP  333 (333)
Q Consensus       312 aGf~~v~~~~~~~------~~~~~a~kp  333 (333)
                      +||++++......      +.++.++||
T Consensus       329 aGf~~~~~~~~~~~~~~~~~~~i~~~~~  356 (360)
T 1tw3_A          329 AGLVVEEVRQLPSPTIPYDLSLLVLAPA  356 (360)
T ss_dssp             TTEEEEEEEEEECSSSSCEEEEEEEEEC
T ss_pred             CCCeEEEEEeCCCCcccCccEEEEEEeC
Confidence            9999988755433      567777764

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.82  E-value=2e-19  Score=161.66  Aligned_cols=124  Identities=21%  Similarity=0.208  Sum_probs=105.0

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC-CCCCeEEEEccCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-LTSNLALVRADVCR  230 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-~~~~i~~~~~d~~~  230 (333)
                      ....+.+...+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.++++....+.. ...++.+..+|+..
T Consensus        43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~  120 (293)
T 3thr_A           43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT  120 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred             HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh
Confidence            44556677777767788999999999999999999876  9999999999999999876432210 02468899999988


Q ss_pred             CC---CCCCCcceEEec-cccccCCC-------hHHHHHHHHHhccCCcEEEEEEecc
Q 019957          231 LP---FASGFVDAVHAG-AALHCWPS-------PSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       231 lp---~~~~~fD~V~~~-~vl~h~~d-------~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      ++   +.+++||+|++. .+++|+++       +..+++++.++|||||++++.+++.
T Consensus       121 ~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  178 (293)
T 3thr_A          121 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY  178 (293)
T ss_dssp             HHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             CccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence            87   778899999998 89999999       8999999999999999999998764

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.82  E-value=3.3e-19  Score=156.84  Aligned_cols=152  Identities=18%  Similarity=0.191  Sum_probs=114.9

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh----------cCc----CCCCC
Q 019957          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ----------DNT----ILTSN  220 (333)
Q Consensus       155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~----------~~~----~~~~~  220 (333)
                      .+.+...+...++.+|||+|||+|..+..|++.|.  +|+|+|+|+.+++.|+++...          .+.    ....+
T Consensus        57 ~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (252)
T 2gb4_A           57 KKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH--TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGS  134 (252)
T ss_dssp             HHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred             HHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCc
Confidence            34444433334678999999999999999999876  999999999999999876531          000    00357


Q ss_pred             eEEEEccCCCCCCCC-CCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccC
Q 019957          221 LALVRADVCRLPFAS-GFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNY  297 (333)
Q Consensus       221 i~~~~~d~~~lp~~~-~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~  297 (333)
                      +.++++|+.++++.+ ++||+|++..+++|++.+  ..+++++.++|||||++++.+.......           .....
T Consensus       135 i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~-----------~~g~~  203 (252)
T 2gb4_A          135 ISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK-----------HAGPP  203 (252)
T ss_dssp             EEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS-----------CCCSS
T ss_pred             eEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc-----------CCCCC
Confidence            999999999998764 899999999999999754  5789999999999999987665432110           01122


Q ss_pred             CCCCHHHHHHHHHhCCCcEEEEE
Q 019957          298 NYLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       298 ~~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                      ..++++++..+++. +|+++...
T Consensus       204 ~~~~~~el~~~l~~-~f~v~~~~  225 (252)
T 2gb4_A          204 FYVPSAELKRLFGT-KCSMQCLE  225 (252)
T ss_dssp             CCCCHHHHHHHHTT-TEEEEEEE
T ss_pred             CCCCHHHHHHHhhC-CeEEEEEe
Confidence            34799999999987 59887654

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.82  E-value=5.6e-19  Score=161.82  Aligned_cols=171  Identities=16%  Similarity=0.082  Sum_probs=132.3

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      ..+.+.+...+ .+|||||||+|.++..+++.++..+++++|+ +.+++.+++++...++  ..++.++.+|+.+ +++ 
T Consensus       158 ~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~-~~~-  231 (334)
T 2ip2_A          158 HEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLA--GERVSLVGGDMLQ-EVP-  231 (334)
T ss_dssp             HHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHH--TTSEEEEESCTTT-CCC-
T ss_pred             HHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCC--CCcEEEecCCCCC-CCC-
Confidence            44444444444 7999999999999999999988889999999 9999999998776553  4689999999977 544 


Q ss_pred             CCcceEEeccccccCCChH--HHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHh--hhccCCCCCHHHHHHHHHh
Q 019957          236 GFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER--ILQNYNYLTEEEIEDLCTS  311 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~t~~~l~~ll~~  311 (333)
                      ++||+|++..++||++++.  .++++++++|||||++++.+...+....+.....+.-.  .......++.++|.+++++
T Consensus       232 ~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~  311 (334)
T 2ip2_A          232 SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGR  311 (334)
T ss_dssp             SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHH
T ss_pred             CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHH
Confidence            6799999999999998876  89999999999999999998775433223322221111  1123456799999999999


Q ss_pred             CCCcEEEEEEe-CeEEEEEEeC
Q 019957          312 CGLTNYTSKVQ-QSFIMFAAQK  332 (333)
Q Consensus       312 aGf~~v~~~~~-~~~~~~~a~k  332 (333)
                      +||+++++... +.+.++.++|
T Consensus       312 aGf~~~~~~~~~~~~~~i~~~~  333 (334)
T 2ip2_A          312 GGFAVERIVDLPMETRMIVAAR  333 (334)
T ss_dssp             TTEEEEEEEEETTTEEEEEEEE
T ss_pred             CCCceeEEEECCCCCEEEEEEe
Confidence            99999887654 3456677765

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.82  E-value=4e-20  Score=163.47  Aligned_cols=161  Identities=17%  Similarity=0.274  Sum_probs=122.7

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC--------------C------------C
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI--------------L------------T  218 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~--------------~------------~  218 (333)
                      .++.+|||||||+|.++..++..+. .+|+|+|+|+.+++.+++++...+..              .            .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            4567899999999999998888764 58999999999999999887553200              0            0


Q ss_pred             CCe-EEEEccCCCCC-CCC---CCcceEEeccccc----cCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHH
Q 019957          219 SNL-ALVRADVCRLP-FAS---GFVDAVHAGAALH----CWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVL  289 (333)
Q Consensus       219 ~~i-~~~~~d~~~lp-~~~---~~fD~V~~~~vl~----h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~  289 (333)
                      .++ .++.+|+.+.+ +.+   ++||+|++..+++    |+.++..+++++.++|||||+|++.+....... ..     
T Consensus       134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~-~~-----  207 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYY-MI-----  207 (265)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEE-EE-----
T ss_pred             hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceE-Ec-----
Confidence            027 89999998764 345   7999999999999    666788999999999999999999986543100 00     


Q ss_pred             HHhhhccCCCCCHHHHHHHHHhCCCcEEEEEEeC-----------eEEEEEEeCC
Q 019957          290 RERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQ-----------SFIMFAAQKP  333 (333)
Q Consensus       290 ~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~~~-----------~~~~~~a~kp  333 (333)
                       .........++.+++.++++++||++++.....           .+++++++|+
T Consensus       208 -~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~  261 (265)
T 2i62_A          208 -GEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKP  261 (265)
T ss_dssp             -TTEEEECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECC
T ss_pred             -CCccccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEeccc
Confidence             011123456899999999999999998875433           4677788885

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.82  E-value=3.7e-19  Score=155.19  Aligned_cols=170  Identities=18%  Similarity=0.227  Sum_probs=127.0

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      ..+.+...+.+  +.+|||+|||+|.++..+++.   .+++|+|+|+.+++.++++....+    .++.++.+|+.++++
T Consensus        23 ~~~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~   93 (243)
T 3d2l_A           23 WVAWVLEQVEP--GKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETN----RHVDFWVQDMRELEL   93 (243)
T ss_dssp             HHHHHHHHSCT--TCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTT----CCCEEEECCGGGCCC
T ss_pred             HHHHHHHHcCC--CCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcC----CceEEEEcChhhcCC
Confidence            34555555543  579999999999999999887   499999999999999999887643    478999999998876


Q ss_pred             CCCCcceEEecc-ccccCC---ChHHHHHHHHHhccCCcEEEEEEecccCC--C---cc---------hh-hH-------
Q 019957          234 ASGFVDAVHAGA-ALHCWP---SPSNAVAEISRILRSGGVFVGTTFLRYTS--S---TS---------LT-GR-------  287 (333)
Q Consensus       234 ~~~~fD~V~~~~-vl~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~--~---~~---------~~-~~-------  287 (333)
                      . ++||+|++.. +++|+.   ++..+++++.++|||||.+++..++....  .   ..         .. ..       
T Consensus        94 ~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (243)
T 3d2l_A           94 P-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPL  172 (243)
T ss_dssp             S-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTT
T ss_pred             C-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCcccc
Confidence            5 7899999986 999994   45688999999999999999977653200  0   00         00 00       


Q ss_pred             -------HH---HH------hhhccCCCCCHHHHHHHHHhCCCcEEEEEEe---------CeEEEEEEeCC
Q 019957          288 -------VL---RE------RILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ---------QSFIMFAAQKP  333 (333)
Q Consensus       288 -------~~---~~------~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~~---------~~~~~~~a~kp  333 (333)
                             .+   ..      ....+.++++.+++.++|+++||++++....         ....+++++||
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K~  243 (243)
T 3d2l_A          173 SVVHELTFFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEKI  243 (243)
T ss_dssp             EEEEEEEEEEECTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEEC
T ss_pred             EEEEEEEEEEEcCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEeC
Confidence                   00   00      0012446789999999999999999887542         24478888886

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.82  E-value=5e-20  Score=162.46  Aligned_cols=114  Identities=27%  Similarity=0.314  Sum_probs=98.7

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      +.+..+.+.+...  .+.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++         .+++.++++|+++
T Consensus        26 p~~l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~---------~~~v~~~~~~~e~   92 (257)
T 4hg2_A           26 PRALFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALR---------HPRVTYAVAPAED   92 (257)
T ss_dssp             CHHHHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCC---------CTTEEEEECCTTC
T ss_pred             HHHHHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhh---------cCCceeehhhhhh
Confidence            4555666666643  356899999999999999999876  99999999999988764         5789999999999


Q ss_pred             CCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957          231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      +|+++++||+|++..++||+ ++.+++++++|+|||||+|++.++...
T Consensus        93 ~~~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~~  139 (257)
T 4hg2_A           93 TGLPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGLT  139 (257)
T ss_dssp             CCCCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             hcccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence            99999999999999999776 688999999999999999999887643

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.82  E-value=9e-20  Score=157.46  Aligned_cols=161  Identities=21%  Similarity=0.289  Sum_probs=120.1

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      +.+...+.  ++.+|||+|||+|.++..+++.++  +++|+|+|+.+++.++++....    ..++.++.+|+.++++++
T Consensus        30 ~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~  101 (227)
T 1ve3_A           30 PLLMKYMK--KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR----ESNVEFIVGDARKLSFED  101 (227)
T ss_dssp             HHHHHSCC--SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEECCTTSCCSCT
T ss_pred             HHHHHhcC--CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc----CCCceEEECchhcCCCCC
Confidence            34444443  367999999999999999999887  9999999999999999987764    357999999999988878


Q ss_pred             CCcceEEeccc--cccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhh------HHHHHhh-h------------
Q 019957          236 GFVDAVHAGAA--LHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG------RVLRERI-L------------  294 (333)
Q Consensus       236 ~~fD~V~~~~v--l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~------~~~~~~~-~------------  294 (333)
                      ++||+|++..+  ++|..++..+++++.++|||||++++.+++..........      ..+.... +            
T Consensus       102 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (227)
T 1ve3_A          102 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFK  181 (227)
T ss_dssp             TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-
T ss_pred             CcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEec
Confidence            89999999999  5566677899999999999999999998864311111000      0000000 0            


Q ss_pred             -------ccCCCCCHHHHHHHHHhCCCcEEEEEEeCeE
Q 019957          295 -------QNYNYLTEEEIEDLCTSCGLTNYTSKVQQSF  325 (333)
Q Consensus       295 -------~~~~~~t~~~l~~ll~~aGf~~v~~~~~~~~  325 (333)
                             .+...++ .++.++|+++||+.++....+.+
T Consensus       182 ~~~~~~~~~~~~w~-~~~~~~l~~~GF~~v~~~~~~~~  218 (227)
T 1ve3_A          182 SEQDSFRVRFNVWG-KTGVELLAKLYFTKEAEEKVGNY  218 (227)
T ss_dssp             ----CCEEEEECCC-HHHHHHHHTTTEEEEEEEEETTT
T ss_pred             cchhhheeehhhhc-hHHHHHHHHHhhhHHHHHHhCCc
Confidence                   0112233 48899999999999997766644

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.81  E-value=2.2e-19  Score=155.02  Aligned_cols=150  Identities=15%  Similarity=0.197  Sum_probs=118.5

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC--CCCC
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFA  234 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~--lp~~  234 (333)
                      .+.+.+. .++.+|||+|||+|.++..+.+.+  .+++|+|+++.+++.++++          ...++.+|+..  .+++
T Consensus        24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~~~~~~~~~~~~----------~~~~~~~d~~~~~~~~~   90 (230)
T 3cc8_A           24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKENG--TRVSGIEAFPEAAEQAKEK----------LDHVVLGDIETMDMPYE   90 (230)
T ss_dssp             HHHTTCC-TTCSEEEEETCTTSHHHHHHHTTT--CEEEEEESSHHHHHHHHTT----------SSEEEESCTTTCCCCSC
T ss_pred             HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHh----------CCcEEEcchhhcCCCCC
Confidence            3444444 467899999999999999999884  5999999999999988863          23688899976  5677


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH---------hhhccCCCCCHHHH
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE---------RILQNYNYLTEEEI  305 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~t~~~l  305 (333)
                      +++||+|++..+++|++++..+++++.++|||||.+++.+++....  .........         ....|.++++.+++
T Consensus        91 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (230)
T 3cc8_A           91 EEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHI--SVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEM  168 (230)
T ss_dssp             TTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSH--HHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHH
T ss_pred             CCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchH--HHHHHHhcCCceeccCCCCCcceEEEecHHHH
Confidence            8899999999999999999999999999999999999999875311  110111111         01245678999999


Q ss_pred             HHHHHhCCCcEEEEEE
Q 019957          306 EDLCTSCGLTNYTSKV  321 (333)
Q Consensus       306 ~~ll~~aGf~~v~~~~  321 (333)
                      .++++++||++++...
T Consensus       169 ~~~l~~~Gf~~~~~~~  184 (230)
T 3cc8_A          169 LRMFLKAGYSISKVDR  184 (230)
T ss_dssp             HHHHHHTTEEEEEEEE
T ss_pred             HHHHHHcCCeEEEEEe
Confidence            9999999999887644

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.81  E-value=4.3e-19  Score=164.52  Aligned_cols=152  Identities=12%  Similarity=0.111  Sum_probs=121.7

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC--CCCCCCcceEE
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH  242 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~  242 (333)
                      ....+|||||||+|.++..+++.+|..+++++|+ +.+++.+++++...++  ..++.++.+|+.+.  |++ ++||+|+
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~p-~~~D~v~  253 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSG--SERIHGHGANLLDRDVPFP-TGFDAVW  253 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTT--GGGEEEEECCCCSSSCCCC-CCCSEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCc--ccceEEEEccccccCCCCC-CCcCEEE
Confidence            4567999999999999999999988889999999 9999999999887664  46899999999875  455 6899999


Q ss_pred             eccccccCCChH--HHHHHHHHhccCCcEEEEEEecccCCCcchhh--HHHHH-----hhhccCCCCCHHHHHHHHHhCC
Q 019957          243 AGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTSLTG--RVLRE-----RILQNYNYLTEEEIEDLCTSCG  313 (333)
Q Consensus       243 ~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~t~~~l~~ll~~aG  313 (333)
                      +..++||++++.  .+|++++++|||||+|++.++...........  .....     ........++.++|+++++++|
T Consensus       254 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AG  333 (363)
T 3dp7_A          254 MSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAG  333 (363)
T ss_dssp             EESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTT
T ss_pred             EechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcC
Confidence            999999998774  78999999999999999998766432221100  00000     1113345679999999999999


Q ss_pred             CcEEEEE
Q 019957          314 LTNYTSK  320 (333)
Q Consensus       314 f~~v~~~  320 (333)
                      |+++++.
T Consensus       334 f~~v~~~  340 (363)
T 3dp7_A          334 LEVEEIQ  340 (363)
T ss_dssp             EEESCCC
T ss_pred             CeEEEEE
Confidence            9998865

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.81  E-value=6.8e-19  Score=158.77  Aligned_cols=160  Identities=18%  Similarity=0.258  Sum_probs=121.4

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhc-CcCCCCCeEEEEccC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADV  228 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d~  228 (333)
                      +....+.+..+.. .++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.+++++... +.  ..++.++++|+
T Consensus        22 ~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~~v~~~~~d~   98 (299)
T 3g5t_A           22 PSDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT--YKNVSFKISSS   98 (299)
T ss_dssp             CHHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-C--CTTEEEEECCT
T ss_pred             CHHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCC--CCceEEEEcCH
Confidence            4455566666544 467899999999999999999764 6779999999999999999998775 22  56899999999


Q ss_pred             CCCCCCC------CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccC-CCcchhhHHHHHh------hhc
Q 019957          229 CRLPFAS------GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT-SSTSLTGRVLRER------ILQ  295 (333)
Q Consensus       229 ~~lp~~~------~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~-~~~~~~~~~~~~~------~~~  295 (333)
                      .++++.+      ++||+|++..++||+ ++..+++++.++|||||.|++.+..... ...+.....+...      ...
T Consensus        99 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (299)
T 3g5t_A           99 DDFKFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGP  177 (299)
T ss_dssp             TCCGGGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGGGTTHHHHHHHCTTTTGG
T ss_pred             HhCCccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecCCccccCcHHHHHHHHHhccCcccccc
Confidence            9998777      899999999999999 9999999999999999999995544321 1111112222111      111


Q ss_pred             cCCCCCHHHHHHHHHhCCC
Q 019957          296 NYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       296 ~~~~~t~~~l~~ll~~aGf  314 (333)
                      .+.....+.+..++++.||
T Consensus       178 ~w~~p~~~~~~~~l~~~gf  196 (299)
T 3g5t_A          178 YWEQPGRSRLRNMLKDSHL  196 (299)
T ss_dssp             GSCTTHHHHHHTTTTTCCC
T ss_pred             hhhchhhHHHHHhhhccCC
Confidence            2222456678999999999

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.81  E-value=7e-20  Score=155.54  Aligned_cols=138  Identities=14%  Similarity=0.116  Sum_probs=112.6

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (333)
                      ++ +|||||||+|.++..+++.+.  +++|+|+|+.+++.++++....+    .++.++.+|+..+++++++||+|++..
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~  102 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASLGY--EVTAVDQSSVGLAKAKQLAQEKG----VKITTVQSNLADFDIVADAWEGIVSIF  102 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHT----CCEEEECCBTTTBSCCTTTCSEEEEEC
T ss_pred             CC-CEEEECCCCCHhHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhcC----CceEEEEcChhhcCCCcCCccEEEEEh
Confidence            35 999999999999999998864  99999999999999999887754    379999999999888888999999954


Q ss_pred             ccccC--CChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957          246 ALHCW--PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       246 vl~h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                        .|+  .++..+++++.++|||||.+++.++.......      .......+..+++.+++.++++  ||+++...
T Consensus       103 --~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~  169 (202)
T 2kw5_A          103 --CHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQY------NTGGPKDLDLLPKLETLQSELP--SLNWLIAN  169 (202)
T ss_dssp             --CCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGG------TSCCSSSGGGCCCHHHHHHHCS--SSCEEEEE
T ss_pred             --hcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccC------CCCCCCcceeecCHHHHHHHhc--CceEEEEE
Confidence              444  46678999999999999999999987642110      0011124567899999999999  99988754

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.81  E-value=1.3e-18  Score=146.20  Aligned_cols=139  Identities=17%  Similarity=0.175  Sum_probs=117.8

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++        ..++.++.+|+..+++++++||+|++.
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~~~~~~~~a~~~--------~~~~~~~~~d~~~~~~~~~~~D~i~~~  114 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQGH--DVLGTDLDPILIDYAKQD--------FPEARWVVGDLSVDQISETDFDLIVSA  114 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHH--------CTTSEEEECCTTTSCCCCCCEEEEEEC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHCCC--cEEEEcCCHHHHHHHHHh--------CCCCcEEEcccccCCCCCCceeEEEEC
Confidence            3577999999999999999998854  999999999999999986        456899999999888878899999998


Q ss_pred             -cccccCCC--hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957          245 -AALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       245 -~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~  321 (333)
                       .+++|+..  ...+++++.++|+|||.+++..+...                    .++.+++..+++++||++++...
T Consensus       115 ~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~--------------------~~~~~~~~~~l~~~Gf~~~~~~~  174 (195)
T 3cgg_A          115 GNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR--------------------GWVFGDFLEVAERVGLELENAFE  174 (195)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS--------------------SCCHHHHHHHHHHHTEEEEEEES
T ss_pred             CcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC--------------------CcCHHHHHHHHHHcCCEEeeeec
Confidence             78999854  47899999999999999999875432                    26889999999999999988643


Q ss_pred             ---------eCeEEEEEEeCC
Q 019957          322 ---------QQSFIMFAAQKP  333 (333)
Q Consensus       322 ---------~~~~~~~~a~kp  333 (333)
                               ...+++++++|+
T Consensus       175 ~~~~~~~~~~~~~~~~v~~k~  195 (195)
T 3cgg_A          175 SWDLKPFVQGSEFLVAVFTKK  195 (195)
T ss_dssp             STTCCBCCTTCSEEEEEEEEC
T ss_pred             ccccCcCCCCCcEEEEEEecC
Confidence                     245677888775

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.80  E-value=1.3e-18  Score=155.82  Aligned_cols=156  Identities=15%  Similarity=0.146  Sum_probs=124.3

Q ss_pred             HhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcc
Q 019957          160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD  239 (333)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD  239 (333)
                      +.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.+++++...+   . ++.++.+|+..+++ +++||
T Consensus       114 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~g~--~v~~vD~s~~~~~~a~~~~~~~~---~-~~~~~~~d~~~~~~-~~~fD  186 (286)
T 3m70_A          114 DAAKIISPCKVLDLGCGQGRNSLYLSLLGY--DVTSWDHNENSIAFLNETKEKEN---L-NISTALYDINAANI-QENYD  186 (286)
T ss_dssp             HHHHHSCSCEEEEESCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---C-CEEEEECCGGGCCC-CSCEE
T ss_pred             HHhhccCCCcEEEECCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHcC---C-ceEEEEeccccccc-cCCcc
Confidence            344444678999999999999999999865  99999999999999999988765   2 89999999998877 78999


Q ss_pred             eEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEE
Q 019957          240 AVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNY  317 (333)
Q Consensus       240 ~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v  317 (333)
                      +|++..+++|++++  ..+++++.++|||||.+++.......... .        .......++.+++..+++.  |+++
T Consensus       187 ~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~--------~~~~~~~~~~~~l~~~~~~--~~~~  255 (286)
T 3m70_A          187 FIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVP-C--------PLPFSFTFAENELKEYYKD--WEFL  255 (286)
T ss_dssp             EEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSC-C--------SSCCSCCBCTTHHHHHTTT--SEEE
T ss_pred             EEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCC-C--------CCCccccCCHHHHHHHhcC--CEEE
Confidence            99999999999665  48999999999999998887765432111 0        1133567889999999966  8776


Q ss_pred             EEEE---------------eCeEEEEEEeCC
Q 019957          318 TSKV---------------QQSFIMFAAQKP  333 (333)
Q Consensus       318 ~~~~---------------~~~~~~~~a~kp  333 (333)
                      ....               ...+..++|+||
T Consensus       256 ~~~~~~~~~~~~~~~g~~~~~~~~~l~arK~  286 (286)
T 3m70_A          256 EYNENMGELHKTDENGNRIKMKFATMLARKK  286 (286)
T ss_dssp             EEECCEEEEEEECSSCCEEEEEEEEEEEECC
T ss_pred             EEEccCCeeeeccCCCCEEEEEEEEEEEecC
Confidence            6421               113677888987

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.80  E-value=2.7e-18  Score=158.57  Aligned_cols=170  Identities=14%  Similarity=0.175  Sum_probs=131.7

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCC
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (333)
                      .+...+...+..+|||||||+|.++..+++++|..+++.+|. +.+++.++++....+   ..+++++.+|+...|.+  
T Consensus       170 ~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~---~~rv~~~~gD~~~~~~~--  243 (353)
T 4a6d_A          170 SVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE---EEQIDFQEGDFFKDPLP--  243 (353)
T ss_dssp             HHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC-----CCSEEEEESCTTTSCCC--
T ss_pred             HHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc---cCceeeecCccccCCCC--
Confidence            344444445567999999999999999999999999999997 889999998876544   57899999999876644  


Q ss_pred             CcceEEeccccccCCChH--HHHHHHHHhccCCcEEEEEEecccC-CCcchhhHHHHHhh--hccCCCCCHHHHHHHHHh
Q 019957          237 FVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYT-SSTSLTGRVLRERI--LQNYNYLTEEEIEDLCTS  311 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~t~~~l~~ll~~  311 (333)
                      .+|+|++.++||+++|+.  ++|+++++.|+|||++++.+...+. ...++....+.-..  .....-+|.++|++++++
T Consensus       244 ~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~  323 (353)
T 4a6d_A          244 EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSS  323 (353)
T ss_dssp             CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHH
T ss_pred             CceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHH
Confidence            579999999999999884  7899999999999999999976543 22333222221111  122345799999999999


Q ss_pred             CCCcEEEEEEeC-eEEEEEEeC
Q 019957          312 CGLTNYTSKVQQ-SFIMFAAQK  332 (333)
Q Consensus       312 aGf~~v~~~~~~-~~~~~~a~k  332 (333)
                      +||+++++...+ .+.+++|+|
T Consensus       324 AGf~~v~v~~~~~~~~~i~ArK  345 (353)
T 4a6d_A          324 AGFRDFQFKKTGAIYDAILARK  345 (353)
T ss_dssp             HTCEEEEEECCSSSCEEEEEEC
T ss_pred             CCCceEEEEEcCCceEEEEEEe
Confidence            999999976544 457788988

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.80  E-value=5.4e-19  Score=162.94  Aligned_cols=168  Identities=15%  Similarity=0.114  Sum_probs=123.6

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCC
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (333)
                      .+.+.+...++.+|||||||+|.++..+++.++..+++++|+ +.++.  +++....+.  ..++.++.+|+. .+++  
T Consensus       175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~--~~~v~~~~~d~~-~~~p--  246 (348)
T 3lst_A          175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDV--AGRWKVVEGDFL-REVP--  246 (348)
T ss_dssp             HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGG--TTSEEEEECCTT-TCCC--
T ss_pred             HHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCC--CCCeEEEecCCC-CCCC--
Confidence            344444555677999999999999999999998889999999 44444  333332332  467999999996 3333  


Q ss_pred             CcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH--hhhccCCCCCHHHHHHHHHhC
Q 019957          237 FVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE--RILQNYNYLTEEEIEDLCTSC  312 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~t~~~l~~ll~~a  312 (333)
                      +||+|++..++||++++  .++|++++++|||||+|++.+........+.....+..  ........++.++|.++++++
T Consensus       247 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~a  326 (348)
T 3lst_A          247 HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAA  326 (348)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHT
T ss_pred             CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHC
Confidence            89999999999999998  69999999999999999999977654433332222211  111345578999999999999


Q ss_pred             CCcEEEEEEeCeE-EEEEEeC
Q 019957          313 GLTNYTSKVQQSF-IMFAAQK  332 (333)
Q Consensus       313 Gf~~v~~~~~~~~-~~~~a~k  332 (333)
                      ||+++++.....+ .++.++|
T Consensus       327 Gf~~~~~~~~~~~~~vie~~p  347 (348)
T 3lst_A          327 GLRLDRVVGTSSVMSIAVGVP  347 (348)
T ss_dssp             TEEEEEEEECSSSCEEEEEEE
T ss_pred             CCceEEEEECCCCcEEEEEEe
Confidence            9999997764443 4555543

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.80  E-value=9.3e-19  Score=157.30  Aligned_cols=154  Identities=19%  Similarity=0.177  Sum_probs=119.9

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC-CCCCcceEEe
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHA  243 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~V~~  243 (333)
                      .++.+|||||||+|.++..+++.+ ..+++|+|+|+.+++.++++....+.  ..++.++.+|+.++++ .+++||+|++
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~v~~  139 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKR--RFKVFFRAQDSYGRHMDLGKEFDVISS  139 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCC--SSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCC--CccEEEEECCccccccCCCCCcCEEEE
Confidence            457899999999999999888875 45899999999999999999887653  3579999999999887 5789999999


Q ss_pred             cccccc----CCChHHHHHHHHHhccCCcEEEEEEecccCCC----------------------cch-hhHHHH-----H
Q 019957          244 GAALHC----WPSPSNAVAEISRILRSGGVFVGTTFLRYTSS----------------------TSL-TGRVLR-----E  291 (333)
Q Consensus       244 ~~vl~h----~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~----------------------~~~-~~~~~~-----~  291 (333)
                      ..+++|    ..++..+|+++.++|||||.+++.+++.....                      .+. .+..+.     .
T Consensus       140 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~  219 (298)
T 1ri5_A          140 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDS  219 (298)
T ss_dssp             ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTS
T ss_pred             CchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchh
Confidence            999977    45678999999999999999999998753100                      000 000000     0


Q ss_pred             hhhccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957          292 RILQNYNYLTEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       292 ~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~  321 (333)
                      ....+.++++.+++..+++++||++++...
T Consensus       220 ~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~  249 (298)
T 1ri5_A          220 VNNCIEYFVDFTRMVDGFKRLGLSLVERKG  249 (298)
T ss_dssp             CSSEEEECCCHHHHHHHHHTTTEEEEEEEE
T ss_pred             hcCCcccccCHHHHHHHHHHcCCEEEEecC
Confidence            001224678999999999999999988644

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.80  E-value=1e-17  Score=142.44  Aligned_cols=137  Identities=18%  Similarity=0.097  Sum_probs=115.0

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      ..+....+...+...++.+|||+|||+|.++..+++.++..+++|+|+|+.+++.+++++...+   ..++.++.+|+.+
T Consensus        25 ~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~  101 (204)
T 3e05_A           25 KQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFV---ARNVTLVEAFAPE  101 (204)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHT---CTTEEEEECCTTT
T ss_pred             hHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEeCChhh
Confidence            4444466777777778889999999999999999999877899999999999999999988776   4689999999966


Q ss_pred             CCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHH
Q 019957          231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCT  310 (333)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~  310 (333)
                      .....++||+|++..+++   ++..+++++.++|||||++++.+....                      +.+++.++++
T Consensus       102 ~~~~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------------~~~~~~~~l~  156 (204)
T 3e05_A          102 GLDDLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTLD----------------------TLTKAVEFLE  156 (204)
T ss_dssp             TCTTSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBHH----------------------HHHHHHHHHH
T ss_pred             hhhcCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecccc----------------------cHHHHHHHHH
Confidence            543346899999988776   788999999999999999999775421                      3467889999


Q ss_pred             hCCCc
Q 019957          311 SCGLT  315 (333)
Q Consensus       311 ~aGf~  315 (333)
                      ++||.
T Consensus       157 ~~g~~  161 (204)
T 3e05_A          157 DHGYM  161 (204)
T ss_dssp             HTTCE
T ss_pred             HCCCc
Confidence            99983

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.80  E-value=2e-19  Score=153.37  Aligned_cols=149  Identities=17%  Similarity=0.259  Sum_probs=115.4

Q ss_pred             cCCCeEEEEcCCcCHH-HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957          165 AQGGLLVDVSCGSGLF-SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~-~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (333)
                      .++.+|||+|||+|.+ ...+...+  .+++|+|+|+.+++.++++....+    .++.++.+|+.++++++++||+|++
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~   95 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLKKAENFSRENN----FKLNISKGDIRKLPFKDESMSFVYS   95 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTT--CEEEEEECCHHHHHHHHHHHHHHT----CCCCEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcC----CceEEEECchhhCCCCCCceeEEEE
Confidence            4567999999999987 44555544  499999999999999999877653    4788999999999988889999999


Q ss_pred             ccccccC--CChHHHHHHHHHhccCCcEEEEEEecccCCCcch---hhHH-H---HHhhhccCCCCCHHHHHHHHHhCCC
Q 019957          244 GAALHCW--PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL---TGRV-L---RERILQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       244 ~~vl~h~--~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~---~~~~-~---~~~~~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      ..+++|+  .++..+++++.++|||||++++.++.........   +... +   ....+...++++.+++..+++++||
T Consensus        96 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~  175 (209)
T 2p8j_A           96 YGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKV  175 (209)
T ss_dssp             CSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEE
T ss_pred             cChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCc
Confidence            9999999  5778999999999999999999998754211100   0000 0   0111123368899999999999999


Q ss_pred             cEEEE
Q 019957          315 TNYTS  319 (333)
Q Consensus       315 ~~v~~  319 (333)
                      ...+.
T Consensus       176 ~~~~~  180 (209)
T 2p8j_A          176 LFKED  180 (209)
T ss_dssp             EEEEE
T ss_pred             eeeee
Confidence            76654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.79  E-value=2.3e-19  Score=161.05  Aligned_cols=157  Identities=18%  Similarity=0.217  Sum_probs=111.1

Q ss_pred             HHHHHhhcc--cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC-------------CC--
Q 019957          156 KMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-------------LT--  218 (333)
Q Consensus       156 ~~~~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-------------~~--  218 (333)
                      ..+.+.+..  .++.+|||||||+|.+...++... ..+|+|+|+|+.|++.|++++......             ..  
T Consensus        59 ~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~  137 (289)
T 2g72_A           59 RCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG  137 (289)
T ss_dssp             HHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred             HHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccC-CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcc
Confidence            344444433  357799999999999554444322 349999999999999998865431100             00  


Q ss_pred             ------------CCeEEEEccCCC-CCC-----CCCCcceEEecccccc----CCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          219 ------------SNLALVRADVCR-LPF-----ASGFVDAVHAGAALHC----WPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       219 ------------~~i~~~~~d~~~-lp~-----~~~~fD~V~~~~vl~h----~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                                  ..+.++.+|+.. +|+     ++++||+|+++.+++|    ++++..+|+++.++|||||+|++....
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~  217 (289)
T 2g72_A          138 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGAL  217 (289)
T ss_dssp             CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             cchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence                        015677789977 654     3467999999999999    667889999999999999999998643


Q ss_pred             ccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957          277 RYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                      .... ...      .....+..+++.+++.++|+++||++++..
T Consensus       218 ~~~~-~~~------~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~  254 (289)
T 2g72_A          218 EESW-YLA------GEARLTVVPVSEEEVREALVRSGYKVRDLR  254 (289)
T ss_dssp             SCCE-EEE------TTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             Ccce-EEc------CCeeeeeccCCHHHHHHHHHHcCCeEEEee
Confidence            3210 000      011123567899999999999999988754

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.79  E-value=2.3e-18  Score=146.59  Aligned_cols=138  Identities=16%  Similarity=0.159  Sum_probs=117.0

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.+++++...+   ..++.++.+|+.+.+  +++||+|++.
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~--~~~fD~i~~~  132 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKLG-AKSVLATDISDESMTAAEENAALNG---IYDIALQKTSLLADV--DGKFDLIVAN  132 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTT---CCCCEEEESSTTTTC--CSCEEEEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcC---CCceEEEeccccccC--CCCceEEEEC
Confidence            457899999999999999988864 5699999999999999999988876   335999999997754  5799999999


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEEeCe
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQS  324 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~~~~  324 (333)
                      .+++++   ..+++++.++|||||++++.++...                      +.+++..+++++||++++....+.
T Consensus       133 ~~~~~~---~~~l~~~~~~L~~gG~l~~~~~~~~----------------------~~~~~~~~~~~~Gf~~~~~~~~~~  187 (205)
T 3grz_A          133 ILAEIL---LDLIPQLDSHLNEDGQVIFSGIDYL----------------------QLPKIEQALAENSFQIDLKMRAGR  187 (205)
T ss_dssp             SCHHHH---HHHGGGSGGGEEEEEEEEEEEEEGG----------------------GHHHHHHHHHHTTEEEEEEEEETT
T ss_pred             CcHHHH---HHHHHHHHHhcCCCCEEEEEecCcc----------------------cHHHHHHHHHHcCCceEEeeccCC
Confidence            888874   7789999999999999999775432                      357899999999999999888899


Q ss_pred             EEEEEEeCC
Q 019957          325 FIMFAAQKP  333 (333)
Q Consensus       325 ~~~~~a~kp  333 (333)
                      |..++.++|
T Consensus       188 w~~~~~~~~  196 (205)
T 3grz_A          188 WIGLAISRK  196 (205)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecc
Confidence            977766543

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.79  E-value=2.3e-18  Score=160.22  Aligned_cols=163  Identities=17%  Similarity=0.173  Sum_probs=123.0

Q ss_pred             HHHHhhc-ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          157 MAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       157 ~~~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      .+.+.+. ..++.+|||||||+|.++..+++.++..+++++|+ +.+++.+++         .+++.++.+|+.+ +++.
T Consensus       199 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~~  267 (372)
T 1fp1_D          199 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP---------LSGIEHVGGDMFA-SVPQ  267 (372)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCC
T ss_pred             HHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh---------cCCCEEEeCCccc-CCCC
Confidence            3334443 34567999999999999999999998889999999 888877664         3579999999977 6553


Q ss_pred             CCcceEEeccccccCCChH--HHHHHHHHhccCCcEEEEEEecccCCCc-ch---hhHHHHHhh--hccCCCCCHHHHHH
Q 019957          236 GFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSST-SL---TGRVLRERI--LQNYNYLTEEEIED  307 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~---~~~~~~~~~--~~~~~~~t~~~l~~  307 (333)
                        ||+|++..+|||++++.  .+|++++++|||||++++.++..+.... +.   ....+....  ......++.++|.+
T Consensus       268 --~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~  345 (372)
T 1fp1_D          268 --GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEK  345 (372)
T ss_dssp             --EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHH
T ss_pred             --CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHH
Confidence              99999999999999988  9999999999999999999876543221 11   011111100  12345679999999


Q ss_pred             HHHhCCCcEEEEEE-eCe-EEEEEEeC
Q 019957          308 LCTSCGLTNYTSKV-QQS-FIMFAAQK  332 (333)
Q Consensus       308 ll~~aGf~~v~~~~-~~~-~~~~~a~k  332 (333)
                      +++++||++++... ... +.++.++|
T Consensus       346 ll~~aGf~~~~~~~~~~~~~~vie~~~  372 (372)
T 1fp1_D          346 LSKLSGFSKFQVACRAFNSLGVMEFYK  372 (372)
T ss_dssp             HHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred             HHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence            99999999988765 333 66665554

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.79  E-value=3.9e-18  Score=151.92  Aligned_cols=152  Identities=18%  Similarity=0.136  Sum_probs=116.6

Q ss_pred             HHHHhhc-ccCCCeEEEEcCCc---CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957          157 MAQEYFK-SAQGGLLVDVSCGS---GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (333)
Q Consensus       157 ~~~~~l~-~~~~~~vLDiGcG~---G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (333)
                      .+.+.+. ..+..+|||||||+   |.++..+.+..+..+|+++|+|+.|++.+++++..     ..++.++.+|+.+.+
T Consensus        67 ~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-----~~~v~~~~~D~~~~~  141 (274)
T 2qe6_A           67 RGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-----DPNTAVFTADVRDPE  141 (274)
T ss_dssp             HHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-----CTTEEEEECCTTCHH
T ss_pred             HHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-----CCCeEEEEeeCCCch
Confidence            3334444 33447999999999   99888888877778999999999999999998754     458999999997531


Q ss_pred             -----------CCCCCcceEEeccccccCCC--hHHHHHHHHHhccCCcEEEEEEecccCCCcchh---hHHHHHhhhcc
Q 019957          233 -----------FASGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT---GRVLRERILQN  296 (333)
Q Consensus       233 -----------~~~~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~---~~~~~~~~~~~  296 (333)
                                 +...+||+|++..+|||+++  +..+|++++++|||||+|++.+.....  ....   ...+.. ....
T Consensus       142 ~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~--~~~~~~~~~~~~~-~~~~  218 (274)
T 2qe6_A          142 YILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG--LPAQQKLARITRE-NLGE  218 (274)
T ss_dssp             HHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS--CHHHHHHHHHHHH-HHSC
T ss_pred             hhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc--hHHHHHHHHHHHh-cCCC
Confidence                       22248999999999999987  789999999999999999999987532  1111   111211 1234


Q ss_pred             CCCCCHHHHHHHHHhCCCcEEE
Q 019957          297 YNYLTEEEIEDLCTSCGLTNYT  318 (333)
Q Consensus       297 ~~~~t~~~l~~ll~~aGf~~v~  318 (333)
                      ..+++.+++..+|  .||++++
T Consensus       219 ~~~~s~~ei~~~l--~G~~l~~  238 (274)
T 2qe6_A          219 GWARTPEEIERQF--GDFELVE  238 (274)
T ss_dssp             CCCBCHHHHHHTT--TTCEECT
T ss_pred             CccCCHHHHHHHh--CCCeEcc
Confidence            6678999999999  5998764

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.78  E-value=3.3e-19  Score=160.45  Aligned_cols=153  Identities=18%  Similarity=0.179  Sum_probs=112.2

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC-----------------------------
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-----------------------------  216 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-----------------------------  216 (333)
                      ++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.|++++...+..                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            578999999999999999999976779999999999999999876543210                             


Q ss_pred             --------------------------CCCCeEEEEccCCCCC-----CCCCCcceEEeccccccCC------ChHHHHHH
Q 019957          217 --------------------------LTSNLALVRADVCRLP-----FASGFVDAVHAGAALHCWP------SPSNAVAE  259 (333)
Q Consensus       217 --------------------------~~~~i~~~~~d~~~lp-----~~~~~fD~V~~~~vl~h~~------d~~~~l~~  259 (333)
                                                ...++.++++|+...+     +.+++||+|++..+++|+.      ++.+++++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                      0148999999997654     5678999999999998875      67789999


Q ss_pred             HHHhccCCcEEEEEEecccCC-CcchhhHHHHHhhhccCCCCCHHHHHHHHHh--CCCcEEEEE
Q 019957          260 ISRILRSGGVFVGTTFLRYTS-STSLTGRVLRERILQNYNYLTEEEIEDLCTS--CGLTNYTSK  320 (333)
Q Consensus       260 ~~r~LkpgG~l~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~--aGf~~v~~~  320 (333)
                      +.++|||||+|++........ ....+........  +...+.++++..+|.+  +||+.++..
T Consensus       206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~--~~~~~~p~~~~~~L~~~~~GF~~~~~~  267 (292)
T 3g07_A          206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNY--YRIQLKPEQFSSYLTSPDVGFSSYELV  267 (292)
T ss_dssp             HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHH--HHCCCCGGGHHHHHTSTTTCCCEEEEC
T ss_pred             HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhh--hcEEEcHHHHHHHHHhcCCCceEEEEe
Confidence            999999999999975432100 0000111111111  1223558999999999  999887753

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.78  E-value=8.3e-18  Score=156.15  Aligned_cols=156  Identities=14%  Similarity=0.165  Sum_probs=118.9

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (333)
                      ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++         ..++.++.+|+.+ +++++  |+|++
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~p~~--D~v~~  267 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA---------FSGVEHLGGDMFD-GVPKG--DAIFI  267 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCCC--SEEEE
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh---------cCCCEEEecCCCC-CCCCC--CEEEE
Confidence            34567999999999999999999998889999999 888876654         4689999999986 65544  99999


Q ss_pred             ccccccCCChH--HHHHHHHHhccCCcEEEEEEecccCCCcc-hh---hHHHHHhh---hccCCCCCHHHHHHHHHhCCC
Q 019957          244 GAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTS-LT---GRVLRERI---LQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       244 ~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-~~---~~~~~~~~---~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      ..++||++++.  ++|++++++|||||+|++.+...+..... ..   ...+.-..   ......++.++|+++++++||
T Consensus       268 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF  347 (368)
T 3reo_A          268 KWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGF  347 (368)
T ss_dssp             ESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTC
T ss_pred             echhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCC
Confidence            99999998775  78999999999999999999775432211 10   11111111   124567899999999999999


Q ss_pred             cEEEEEEe-CeEEEEEEeC
Q 019957          315 TNYTSKVQ-QSFIMFAAQK  332 (333)
Q Consensus       315 ~~v~~~~~-~~~~~~~a~k  332 (333)
                      +++++... +.+.++.+.|
T Consensus       348 ~~v~~~~~~~~~~vie~~k  366 (368)
T 3reo_A          348 RGFKVASCAFNTYVMEFLK  366 (368)
T ss_dssp             CEEEEEEEETTEEEEEEEC
T ss_pred             eeeEEEEeCCCcEEEEEEe
Confidence            99987543 3444555544

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.78  E-value=1.1e-17  Score=146.87  Aligned_cols=162  Identities=20%  Similarity=0.285  Sum_probs=119.2

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (333)
                      ..++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.++++....+    .++.++++|+.++++. ++||+|++
T Consensus        39 ~~~~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~~-~~fD~v~~  111 (252)
T 1wzn_A           39 KREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKERN----LKIEFLQGDVLEIAFK-NEFDAVTM  111 (252)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCCEEEESCGGGCCCC-SCEEEEEE
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhcC----CceEEEECChhhcccC-CCccEEEE
Confidence            34567999999999999999998865  99999999999999999887654    3789999999988764 68999998


Q ss_pred             cc-ccccCC--ChHHHHHHHHHhccCCcEEEEEEecccCC--Cc----------------ch--hhH------------H
Q 019957          244 GA-ALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTS--ST----------------SL--TGR------------V  288 (333)
Q Consensus       244 ~~-vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~--~~----------------~~--~~~------------~  288 (333)
                      .. +++|+.  +...+++++.++|||||.+++..++....  ..                .+  +..            .
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (252)
T 1wzn_A          112 FFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKRLVQI  191 (252)
T ss_dssp             CSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC-------CCEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred             cCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccchhcccCCCCeeeeccCCCeeEEEEeecccccccceeeheeeeee
Confidence            64 455553  45689999999999999999876652100  00                00  000            0


Q ss_pred             H-HHh------hhccCCCCCHHHHHHHHHhCCCcEEEEEEe--------CeEEEEEEeCC
Q 019957          289 L-RER------ILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ--------QSFIMFAAQKP  333 (333)
Q Consensus       289 ~-~~~------~~~~~~~~t~~~l~~ll~~aGf~~v~~~~~--------~~~~~~~a~kp  333 (333)
                      . ...      ...+.++++.++++ +++++||++++....        ..-++++++||
T Consensus       192 ~~~~g~~~~~~~~~~~~~~~~~e~~-~l~~aGF~~~~~~~~~~~~~~~~~~r~~~va~k~  250 (252)
T 1wzn_A          192 LRPNGEVKAFLVDDELNIYTPREVR-LLAEKYFEKVKIYGNLKRELSPNDMRYWIVGIAK  250 (252)
T ss_dssp             ECTTSCEEEEEEEEEEECCCHHHHH-HHHTTTSSEEEEEETTBSSCCTTCCEEEEEEECC
T ss_pred             cccCCceeEEEEeeeeeeecHHHHH-HHHHhcCceeeeecccccccCCCCceEEEEEEee
Confidence            0 000      01345789999997 899999999886432        23477888875

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.78  E-value=1.7e-18  Score=148.54  Aligned_cols=114  Identities=15%  Similarity=0.264  Sum_probs=99.9

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      ..+...+...++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.++++...     ..++.++.+|+.+++ .+
T Consensus        41 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~-~~  112 (216)
T 3ofk_A           41 QLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK--RLTVIDVMPRAIGRACQRTKR-----WSHISWAATDILQFS-TA  112 (216)
T ss_dssp             HHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE--EEEEEESCHHHHHHHHHHTTT-----CSSEEEEECCTTTCC-CS
T ss_pred             HHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHhccc-----CCCeEEEEcchhhCC-CC
Confidence            4455556666678999999999999999999875  999999999999999998765     348999999999988 57


Q ss_pred             CCcceEEeccccccCCCh---HHHHHHHHHhccCCcEEEEEEecc
Q 019957          236 GFVDAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      ++||+|++..+++|++++   ..+++++.++|||||.+++.++..
T Consensus       113 ~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  157 (216)
T 3ofk_A          113 ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD  157 (216)
T ss_dssp             CCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             CCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            899999999999999998   467999999999999999988754

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.78  E-value=1.4e-17  Score=154.30  Aligned_cols=162  Identities=18%  Similarity=0.171  Sum_probs=121.2

Q ss_pred             HHHhhc-ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCC
Q 019957          158 AQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (333)
Q Consensus       158 ~~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (333)
                      +...+. ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++         ..++.++.+|+.+ |++.+
T Consensus       192 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~-~~p~~  260 (364)
T 3p9c_A          192 LLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ---------FPGVTHVGGDMFK-EVPSG  260 (364)
T ss_dssp             HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCCCC
T ss_pred             HHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh---------cCCeEEEeCCcCC-CCCCC
Confidence            444444 44567999999999999999999998889999999 888776654         4689999999987 66654


Q ss_pred             CcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCc-chhhH--HHHH-h---hhccCCCCCHHHHHH
Q 019957          237 FVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSST-SLTGR--VLRE-R---ILQNYNYLTEEEIED  307 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~~~--~~~~-~---~~~~~~~~t~~~l~~  307 (333)
                        |+|++..+|||+++.  .++|++++++|||||+|++.+...+.... .....  .... .   .......++.++|++
T Consensus       261 --D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~  338 (364)
T 3p9c_A          261 --DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQA  338 (364)
T ss_dssp             --SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHH
T ss_pred             --CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHH
Confidence              999999999999776  48899999999999999999877643221 11010  1111 1   113445689999999


Q ss_pred             HHHhCCCcEEEEEE-eCeEEEEEEeC
Q 019957          308 LCTSCGLTNYTSKV-QQSFIMFAAQK  332 (333)
Q Consensus       308 ll~~aGf~~v~~~~-~~~~~~~~a~k  332 (333)
                      +++++||+++++.. ...+.++.+.|
T Consensus       339 ll~~AGF~~v~~~~~~~~~~vie~~k  364 (364)
T 3p9c_A          339 LARGAGFTGVKSTYIYANAWAIEFTK  364 (364)
T ss_dssp             HHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred             HHHHCCCceEEEEEcCCceEEEEEeC
Confidence            99999999998754 33344444443

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.77  E-value=1.5e-17  Score=163.90  Aligned_cols=164  Identities=13%  Similarity=0.111  Sum_probs=126.4

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCc---CCCCCeEEEEccC
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNT---ILTSNLALVRADV  228 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~---~~~~~i~~~~~d~  228 (333)
                      ...+.+.+.+...++.+|||||||+|.++..+++.+ +..+|+|+|+|+.+++.|++++.....   ....++.++++|+
T Consensus       708 qRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa  787 (950)
T 3htx_A          708 QRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI  787 (950)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT
T ss_pred             HHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch
Confidence            445666777776778899999999999999999987 446999999999999999987653210   0145899999999


Q ss_pred             CCCCCCCCCcceEEeccccccCCChH--HHHHHHHHhccCCcEEEEEEecccCCCcchhhHH-------H-------HHh
Q 019957          229 CRLPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV-------L-------RER  292 (333)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~-------~-------~~~  292 (333)
                      .++++.+++||+|++..+++|++++.  .+++++.++|||| .+++.+++...  ...+...       .       .-+
T Consensus       788 ~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ey--N~lF~~Lnp~tr~~dPd~~~~~~fR  864 (950)
T 3htx_A          788 LEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEF--NTILQRSTPETQEENNSEPQLPKFR  864 (950)
T ss_dssp             TSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGG--HHHHTCC------------CCSSCS
T ss_pred             HhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchh--hhhhhhccccccccccccccccccc
Confidence            99999889999999999999999876  5899999999999 88998887631  1111100       0       002


Q ss_pred             hhccCCCCCHHHHHH----HHHhCCCcEEEE
Q 019957          293 ILQNYNYLTEEEIED----LCTSCGLTNYTS  319 (333)
Q Consensus       293 ~~~~~~~~t~~~l~~----ll~~aGf~~v~~  319 (333)
                      ...|...++.++++.    +.++.||.+.-.
T Consensus       865 h~DHrFEWTReEFr~Wae~LAer~GYsVefv  895 (950)
T 3htx_A          865 NHDHKFEWTREQFNQWASKLGKRHNYSVEFS  895 (950)
T ss_dssp             CSSCSCCBCHHHHHHHHHHHHHHTTEEEEEE
T ss_pred             ccCcceeecHHHHHHHHHHHHHhcCcEEEEE
Confidence            235566688888887    778889976554

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.76  E-value=2.5e-17  Score=142.90  Aligned_cols=147  Identities=14%  Similarity=0.163  Sum_probs=110.6

Q ss_pred             hcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC----CCCCCCC
Q 019957          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----LPFASGF  237 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~----lp~~~~~  237 (333)
                      +...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.++++...     ..++.++.+|+..    +++. ++
T Consensus        70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~-----~~~v~~~~~d~~~~~~~~~~~-~~  143 (230)
T 1fbn_A           70 MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-----RENIIPILGDANKPQEYANIV-EK  143 (230)
T ss_dssp             CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-----CTTEEEEECCTTCGGGGTTTS-CC
T ss_pred             cCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc-----CCCeEEEECCCCCcccccccC-cc
Confidence            344567899999999999999999985456999999999999999988655     3589999999988    6765 78


Q ss_pred             cceEEeccccccCCCh---HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957          238 VDAVHAGAALHCWPSP---SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       238 fD~V~~~~vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      ||+|+     ++++++   ..+++++.++|||||.+++..........+...            .+..+++. +++++||
T Consensus       144 ~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~------------~~~~~~l~-~l~~~Gf  205 (230)
T 1fbn_A          144 VDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPK------------EIFKEQKE-ILEAGGF  205 (230)
T ss_dssp             EEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHH------------HHHHHHHH-HHHHHTE
T ss_pred             EEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHH------------HhhHHHHH-HHHHCCC
Confidence            99998     556777   778999999999999999973221111110000            11236787 8999999


Q ss_pred             cEEEEEEeCe----EEEEEEeC
Q 019957          315 TNYTSKVQQS----FIMFAAQK  332 (333)
Q Consensus       315 ~~v~~~~~~~----~~~~~a~k  332 (333)
                      ++++......    ..+++++|
T Consensus       206 ~~~~~~~~~~~~~~~~~v~~~k  227 (230)
T 1fbn_A          206 KIVDEVDIEPFEKDHVMFVGIW  227 (230)
T ss_dssp             EEEEEEECTTTSTTEEEEEEEE
T ss_pred             EEEEEEccCCCccceEEEEEEe
Confidence            9988665443    46666655

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.76  E-value=8.6e-17  Score=137.00  Aligned_cols=138  Identities=15%  Similarity=0.149  Sum_probs=111.4

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ......+...+...++.+|||+|||+|.++..+++.+  .+|+|+|+++.+++.|+++++..++  ..++.++.+|+.+.
T Consensus        41 ~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~~  116 (204)
T 3njr_A           41 SPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAG--GRAITIEPRADRIENIQKNIDTYGL--SPRMRAVQGTAPAA  116 (204)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCTTGG
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCC--CCCEEEEeCchhhh
Confidence            3444566677777778899999999999999999884  4999999999999999999988773  33899999999873


Q ss_pred             CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHh
Q 019957          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTS  311 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~  311 (333)
                      ......||+|++...+    ++. +++++.++|||||++++......                      +..++.+++++
T Consensus       117 ~~~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~~----------------------~~~~~~~~l~~  169 (204)
T 3njr_A          117 LADLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTLE----------------------SETLLTQLHAR  169 (204)
T ss_dssp             GTTSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSHH----------------------HHHHHHHHHHH
T ss_pred             cccCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCcc----------------------cHHHHHHHHHh
Confidence            3234579999987754    566 99999999999999999875431                      24577888999


Q ss_pred             CCCcEEEEE
Q 019957          312 CGLTNYTSK  320 (333)
Q Consensus       312 aGf~~v~~~  320 (333)
                      .|+++....
T Consensus       170 ~g~~i~~i~  178 (204)
T 3njr_A          170 HGGQLLRID  178 (204)
T ss_dssp             HCSEEEEEE
T ss_pred             CCCcEEEEE
Confidence            999877653

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.76  E-value=4.3e-18  Score=150.43  Aligned_cols=149  Identities=26%  Similarity=0.355  Sum_probs=112.3

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      +.+...+.  ++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.++++..        . .++.+|+.++++++
T Consensus        46 ~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~--------~-~~~~~d~~~~~~~~  112 (260)
T 2avn_A           46 SFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGV--------K-NVVEAKAEDLPFPS  112 (260)
T ss_dssp             HHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHTC--------S-CEEECCTTSCCSCT
T ss_pred             HHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCC--eEEEEeCCHHHHHHHHhhcC--------C-CEEECcHHHCCCCC
Confidence            34444443  577999999999999999998864  99999999999999998632        1 28899999999888


Q ss_pred             CCcceEEeccccccC-CChHHHHHHHHHhccCCcEEEEEEecccCCCcc------h--hhHHHHHhhhc--------cCC
Q 019957          236 GFVDAVHAGAALHCW-PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTS------L--TGRVLRERILQ--------NYN  298 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~-~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~------~--~~~~~~~~~~~--------~~~  298 (333)
                      ++||+|++..+++|+ +++..+|+++.++|||||.+++.+++.......      +  ....+......        ..+
T Consensus       113 ~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (260)
T 2avn_A          113 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSY  192 (260)
T ss_dssp             TCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEE
T ss_pred             CCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEe
Confidence            999999999877776 789999999999999999999999875311000      0  00001110000        113


Q ss_pred             CCCHHHHHHHHHhCCCcEEEEE
Q 019957          299 YLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       299 ~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                      +++.+++..+   +||++++..
T Consensus       193 ~~~~~~l~~l---aGf~~~~~~  211 (260)
T 2avn_A          193 AFKPEDLDSL---EGFETVDIR  211 (260)
T ss_dssp             CBCGGGGSSC---TTEEEEEEE
T ss_pred             ccCHHHHHHh---cCceEEEEE
Confidence            7899999888   999988754

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.76  E-value=2.8e-17  Score=136.26  Aligned_cols=137  Identities=18%  Similarity=0.158  Sum_probs=109.7

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP  232 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp  232 (333)
                      ....+.+.+...++.+|||+|||+|.++..+++..+..+++|+|+++.+++.+++++...++  ..++ ++.+|..+ ++
T Consensus        13 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~-~~~~d~~~~~~   89 (178)
T 3hm2_A           13 VRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGV--SDRI-AVQQGAPRAFD   89 (178)
T ss_dssp             HHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTC--TTSE-EEECCTTGGGG
T ss_pred             HHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCC--CCCE-EEecchHhhhh
Confidence            34556666777778899999999999999999987677999999999999999999888763  3378 88888744 34


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhC
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC  312 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~a  312 (333)
                      ..+++||+|++..+++|    ..+++++.++|||||++++.+....                      +...+..++++.
T Consensus        90 ~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~~----------------------~~~~~~~~~~~~  143 (178)
T 3hm2_A           90 DVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTVE----------------------SEQMLWALRKQF  143 (178)
T ss_dssp             GCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSHH----------------------HHHHHHHHHHHH
T ss_pred             ccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeeccc----------------------cHHHHHHHHHHc
Confidence            32379999999999988    6679999999999999999875432                      235677888888


Q ss_pred             CCcEEEE
Q 019957          313 GLTNYTS  319 (333)
Q Consensus       313 Gf~~v~~  319 (333)
                      |++....
T Consensus       144 ~~~~~~~  150 (178)
T 3hm2_A          144 GGTISSF  150 (178)
T ss_dssp             CCEEEEE
T ss_pred             CCeeEEE
Confidence            8877654

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.75  E-value=1.4e-17  Score=153.67  Aligned_cols=154  Identities=16%  Similarity=0.186  Sum_probs=117.5

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++         ..++.++.+|+.+ +++  .||+|++.
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~p--~~D~v~~~  253 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG---------SNNLTYVGGDMFT-SIP--NADAVLLK  253 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------BTTEEEEECCTTT-CCC--CCSEEEEE
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc---------CCCcEEEeccccC-CCC--CccEEEee
Confidence            3567999999999999999999988889999999 998887764         3469999999966 544  39999999


Q ss_pred             cccccCCChH--HHHHHHHHhccC---CcEEEEEEecccCCCcc----hhhHHHHHhhh-ccCCCCCHHHHHHHHHhCCC
Q 019957          245 AALHCWPSPS--NAVAEISRILRS---GGVFVGTTFLRYTSSTS----LTGRVLRERIL-QNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       245 ~vl~h~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~t~~~l~~ll~~aGf  314 (333)
                      .+|||++++.  ++|++++++|||   ||++++.++........    .....+.-... .....++.++|.++++++||
T Consensus       254 ~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf  333 (352)
T 1fp2_A          254 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGF  333 (352)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTC
T ss_pred             hhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCC
Confidence            9999999987  999999999999   99999998775432211    11111111000 11445789999999999999


Q ss_pred             cEEEEEEeCe-EEEEEEe
Q 019957          315 TNYTSKVQQS-FIMFAAQ  331 (333)
Q Consensus       315 ~~v~~~~~~~-~~~~~a~  331 (333)
                      +++++..... ..++.++
T Consensus       334 ~~~~~~~~~~~~~vie~~  351 (352)
T 1fp2_A          334 QHYKISPLTGFLSLIEIY  351 (352)
T ss_dssp             CEEEEEEEETTEEEEEEE
T ss_pred             CeeEEEecCCCcEEEEEe
Confidence            9988755333 3555554

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.75  E-value=3.5e-17  Score=137.21  Aligned_cols=151  Identities=13%  Similarity=0.211  Sum_probs=118.7

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCC--eEEEEccCCC
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSN--LALVRADVCR  230 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~--i~~~~~d~~~  230 (333)
                      ...+.+.+.+...++.+|||+|||+|.++..+++.+  .+++|+|+++.+++.+++++...+   ..+  +.++.+|+.+
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~---~~~~~~~~~~~d~~~  113 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKLNN---LDNYDIRVVHSDLYE  113 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTT---CTTSCEEEEECSTTT
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHcC---CCccceEEEECchhc
Confidence            455667777776678899999999999999999884  499999999999999999988766   344  9999999977


Q ss_pred             CCCCCCCcceEEecccccc-CCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHH
Q 019957          231 LPFASGFVDAVHAGAALHC-WPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLC  309 (333)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h-~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll  309 (333)
                      . +.+++||+|++..+++| ..+...+++++.++|+|||.+++.++...                      ...++.+.+
T Consensus       114 ~-~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----------------------~~~~~~~~l  170 (194)
T 1dus_A          114 N-VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ----------------------GAKSLAKYM  170 (194)
T ss_dssp             T-CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTH----------------------HHHHHHHHH
T ss_pred             c-cccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCC----------------------ChHHHHHHH
Confidence            3 34678999999988887 34567899999999999999999987642                      113466666


Q ss_pred             HhCCCcEEE-EEEeCeEEEEEEeC
Q 019957          310 TSCGLTNYT-SKVQQSFIMFAAQK  332 (333)
Q Consensus       310 ~~aGf~~v~-~~~~~~~~~~~a~k  332 (333)
                      ++. |..++ ......|.++.++|
T Consensus       171 ~~~-~~~~~~~~~~~~~~~~~~~k  193 (194)
T 1dus_A          171 KDV-FGNVETVTIKGGYRVLKSKK  193 (194)
T ss_dssp             HHH-HSCCEEEEEETTEEEEEEEC
T ss_pred             HHH-hcceEEEecCCcEEEEEEee
Confidence            666 43333 34566788888776

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.75  E-value=4.6e-18  Score=153.49  Aligned_cols=155  Identities=13%  Similarity=0.118  Sum_probs=109.0

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCC---CCCeEEEEccC------CCC--CCC
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL---TSNLALVRADV------CRL--PFA  234 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~---~~~i~~~~~d~------~~l--p~~  234 (333)
                      ++.+|||||||+|..+..+...+ ..+|+|+|+|+.|++.|+++....+...   ..++.+.+.|+      .++  +++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            46799999999998666555544 3489999999999999999876643100   01367888887      222  245


Q ss_pred             CCCcceEEeccccccC---CChHHHHHHHHHhccCCcEEEEEEecccCCCc-----------c-hhhHH-----------
Q 019957          235 SGFVDAVHAGAALHCW---PSPSNAVAEISRILRSGGVFVGTTFLRYTSST-----------S-LTGRV-----------  288 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~---~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-----------~-~~~~~-----------  288 (333)
                      +++||+|+|..++||+   .+...+|+++.++|||||+|++.+++......           . .....           
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  206 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR  206 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence            7899999999999875   45578999999999999999999987531000           0 00000           


Q ss_pred             ---HHHh---hhccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957          289 ---LRER---ILQNYNYLTEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       289 ---~~~~---~~~~~~~~t~~~l~~ll~~aGf~~v~~~~  321 (333)
                         +...   .....++.+.+++..+++++||+++....
T Consensus       207 ~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~  245 (302)
T 2vdw_A          207 IVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVD  245 (302)
T ss_dssp             EEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             cceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecC
Confidence               0000   00112467789999999999999988644

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.75  E-value=8.6e-18  Score=146.96  Aligned_cols=143  Identities=15%  Similarity=0.078  Sum_probs=112.3

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC-----CCcc
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS-----GFVD  239 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~-----~~fD  239 (333)
                      .++.+|||||||+|.++..+++.++  +|+|+|+|+.+++.++++..      ..++.++++|+.++++..     ..||
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~~~d  126 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT------AANISYRLLDGLVPEQAAQIHSEIGDA  126 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC------CTTEEEEECCTTCHHHHHHHHHHHCSC
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc------ccCceEEECcccccccccccccccCcc
Confidence            4567999999999999999999987  99999999999999998762      347999999998865332     2499


Q ss_pred             eEEeccccccCC--ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHH----------H--hhhccCCCCCHHHH
Q 019957          240 AVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR----------E--RILQNYNYLTEEEI  305 (333)
Q Consensus       240 ~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~----------~--~~~~~~~~~t~~~l  305 (333)
                      +|++..+++|++  ++..+++++.++|||||++++.++....  ..++.....          .  ........++.+++
T Consensus       127 ~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (245)
T 3ggd_A          127 NIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGC--IDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDI  204 (245)
T ss_dssp             EEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTH--HHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHH
T ss_pred             EEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccc--cHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHH
Confidence            999999999998  7889999999999999999999876541  111000000          0  00112245899999


Q ss_pred             HHHHHhCCCcEEEE
Q 019957          306 EDLCTSCGLTNYTS  319 (333)
Q Consensus       306 ~~ll~~aGf~~v~~  319 (333)
                      .+++  +||+++..
T Consensus       205 ~~~~--aGf~~~~~  216 (245)
T 3ggd_A          205 ELYF--PDFEILSQ  216 (245)
T ss_dssp             HHHC--TTEEEEEE
T ss_pred             HHHh--CCCEEEec
Confidence            9999  99999874

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.75  E-value=3.9e-18  Score=146.56  Aligned_cols=152  Identities=20%  Similarity=0.208  Sum_probs=107.5

Q ss_pred             hhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH----HhcCcCCCCCeEEEEccCCCCCCCCC
Q 019957          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI----KQDNTILTSNLALVRADVCRLPFASG  236 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~----~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (333)
                      .+...++.+|||||||+|.++..+++.++..+|+|+|+|+.+++.+.++.    ...+   .+++.++++|+.++|+.++
T Consensus        22 ~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~---~~~v~~~~~d~~~l~~~~~   98 (218)
T 3mq2_A           22 QLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGG---LPNLLYLWATAERLPPLSG   98 (218)
T ss_dssp             HHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTC---CTTEEEEECCSTTCCSCCC
T ss_pred             HhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcC---CCceEEEecchhhCCCCCC
Confidence            34456678999999999999999999987789999999999888643333    2233   4589999999999998766


Q ss_pred             CcceEEe---cccc--ccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHh
Q 019957          237 FVDAVHA---GAAL--HCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTS  311 (333)
Q Consensus       237 ~fD~V~~---~~vl--~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~  311 (333)
                      + |.|+.   ...+  +|++++..+++++.++|||||++++....... .... . .. ...+.....+..+++..++++
T Consensus        99 ~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~-~-~~-~~~~~~~~~~~~~~l~~~l~~  173 (218)
T 3mq2_A           99 V-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAW-RPSV-P-EV-GEHPEPTPDSADEWLAPRYAE  173 (218)
T ss_dssp             E-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGB-TTBC-G-GG-TTCCCCCHHHHHHHHHHHHHH
T ss_pred             C-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccc-cccc-c-cc-ccCCccchHHHHHHHHHHHHH
Confidence            6 66663   3334  38899999999999999999999996543220 0000 0 00 011111111224558889999


Q ss_pred             CCCcEEEEE
Q 019957          312 CGLTNYTSK  320 (333)
Q Consensus       312 aGf~~v~~~  320 (333)
                      +||++.+..
T Consensus       174 aGf~i~~~~  182 (218)
T 3mq2_A          174 AGWKLADCR  182 (218)
T ss_dssp             TTEEEEEEE
T ss_pred             cCCCceeee
Confidence            999988754

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.74  E-value=2e-17  Score=141.24  Aligned_cols=115  Identities=21%  Similarity=0.308  Sum_probs=97.4

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (333)
Q Consensus       155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (333)
                      .+.+...+  .++.+|||+|||+|.++..+++.++. +++|+|+|+.+++.++++...     ..++.++.+|+.+++++
T Consensus        33 ~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~-----~~~i~~~~~d~~~~~~~  104 (215)
T 2pxx_A           33 RALLEPEL--RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAH-----VPQLRWETMDVRKLDFP  104 (215)
T ss_dssp             HHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTT-----CTTCEEEECCTTSCCSC
T ss_pred             HHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhccc-----CCCcEEEEcchhcCCCC
Confidence            34444443  45779999999999999999998743 899999999999999987654     35899999999998888


Q ss_pred             CCCcceEEeccccccCC---------------ChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          235 SGFVDAVHAGAALHCWP---------------SPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~---------------d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      +++||+|++..+++|+.               ++..+++++.++|||||.+++.++..
T Consensus       105 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          105 SASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             SSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             CCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            88999999999987765               55789999999999999999998754

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.73  E-value=3.5e-17  Score=140.17  Aligned_cols=124  Identities=17%  Similarity=0.284  Sum_probs=103.3

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++.+|||||||+|.++..+.     .+++|+|+++.                  ++.++.+|+.++++++++||+|++.
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~------------------~~~~~~~d~~~~~~~~~~fD~v~~~  122 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR-----NPVHCFDLASL------------------DPRVTVCDMAQVPLEDESVDVAVFC  122 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS------------------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred             CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC------------------CceEEEeccccCCCCCCCEeEEEEe
Confidence            456799999999999988773     38999999886                  2457899999998888899999999


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEEe-C
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQ-Q  323 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~~-~  323 (333)
                      .++|| .++..+++++.++|+|||.+++.++...                    +.+.+++..+++++||++++.... .
T Consensus       123 ~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~~--------------------~~~~~~~~~~l~~~Gf~~~~~~~~~~  181 (215)
T 2zfu_A          123 LSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSSR--------------------FEDVRTFLRAVTKLGFKIVSKDLTNS  181 (215)
T ss_dssp             SCCCS-SCHHHHHHHHHHHEEEEEEEEEEECGGG--------------------CSCHHHHHHHHHHTTEEEEEEECCST
T ss_pred             hhccc-cCHHHHHHHHHHhCCCCeEEEEEEcCCC--------------------CCCHHHHHHHHHHCCCEEEEEecCCC
Confidence            99965 8999999999999999999999885431                    238899999999999999886543 3


Q ss_pred             eEEEEEEeC
Q 019957          324 SFIMFAAQK  332 (333)
Q Consensus       324 ~~~~~~a~k  332 (333)
                      .+.++.++|
T Consensus       182 ~~~~~~~~k  190 (215)
T 2zfu_A          182 HFFLFDFQK  190 (215)
T ss_dssp             TCEEEEEEE
T ss_pred             eEEEEEEEe
Confidence            456666665

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.73  E-value=1.2e-18  Score=151.98  Aligned_cols=148  Identities=12%  Similarity=0.202  Sum_probs=106.3

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC--CCC
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFA  234 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~  234 (333)
                      .+.+.+. .++.+|||||||+|..+..+++..+ .+++|+|+|+.+++.|+++....    ..++.++.+|+..+  +++
T Consensus        52 ~~a~~~~-~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~----~~~~~~~~~~a~~~~~~~~  125 (236)
T 3orh_A           52 ALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAPTLP  125 (236)
T ss_dssp             HHHHHHT-TTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGGGSC
T ss_pred             HHHHhhc-cCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhC----CCceEEEeehHHhhccccc
Confidence            3344433 4678999999999999999988764 48999999999999999988775    34788899988653  466


Q ss_pred             CCCcceEEe-----ccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHH
Q 019957          235 SGFVDAVHA-----GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLC  309 (333)
Q Consensus       235 ~~~fD~V~~-----~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll  309 (333)
                      +++||.|+.     ..+++|+.++..+++++.|+|||||+|++......       ..... ...........+.+...|
T Consensus       126 ~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~L  197 (236)
T 3orh_A          126 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSW-------GELMK-SKYSDITIMFEETQVPAL  197 (236)
T ss_dssp             TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHH-------HHHTT-TTCSCHHHHHHHHTHHHH
T ss_pred             ccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCc-------hhhhh-hhhhhhhhhhHHHHHHHH
Confidence            889999874     56678888999999999999999999987542211       00000 000000111235566778


Q ss_pred             HhCCCcEEE
Q 019957          310 TSCGLTNYT  318 (333)
Q Consensus       310 ~~aGf~~v~  318 (333)
                      .++||+++.
T Consensus       198 ~eaGF~~~~  206 (236)
T 3orh_A          198 LEAGFRREN  206 (236)
T ss_dssp             HHHTCCGGG
T ss_pred             HHcCCeEEE
Confidence            899997543

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.73  E-value=4.9e-17  Score=143.28  Aligned_cols=136  Identities=15%  Similarity=0.220  Sum_probs=116.0

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.++++...+++   . +.++.+|+.+. +++++||+|+++
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~---~-v~~~~~d~~~~-~~~~~fD~Vv~n  191 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGV---R-PRFLEGSLEAA-LPFGPFDLLVAN  191 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTC---C-CEEEESCHHHH-GGGCCEEEEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCC---c-EEEEECChhhc-CcCCCCCEEEEC
Confidence            4578999999999999999999876  999999999999999999888763   3 88999988662 346789999998


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEEeCe
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQS  324 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~~~~  324 (333)
                      ...++   ...++.++.++|||||++++......                      +.+++.++++++||++++....+.
T Consensus       192 ~~~~~---~~~~l~~~~~~LkpgG~lils~~~~~----------------------~~~~v~~~l~~~Gf~~~~~~~~~~  246 (254)
T 2nxc_A          192 LYAEL---HAALAPRYREALVPGGRALLTGILKD----------------------RAPLVREAMAGAGFRPLEEAAEGE  246 (254)
T ss_dssp             CCHHH---HHHHHHHHHHHEEEEEEEEEEEEEGG----------------------GHHHHHHHHHHTTCEEEEEEEETT
T ss_pred             CcHHH---HHHHHHHHHHHcCCCCEEEEEeeccC----------------------CHHHHHHHHHHCCCEEEEEeccCC
Confidence            76554   46789999999999999999875432                      357899999999999999999999


Q ss_pred             EEEEEEeC
Q 019957          325 FIMFAAQK  332 (333)
Q Consensus       325 ~~~~~a~k  332 (333)
                      |..++++|
T Consensus       247 W~~l~~~k  254 (254)
T 2nxc_A          247 WVLLAYGR  254 (254)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEEEC
Confidence            99988876

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.73  E-value=4e-17  Score=145.53  Aligned_cols=134  Identities=19%  Similarity=0.190  Sum_probs=108.4

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhc-CcCCCCCeEEEEccCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d~~~lp~  233 (333)
                      ..+...+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.+++++... +   ..++.++.+|+.+ ++
T Consensus       100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g---~~~v~~~~~d~~~-~~  175 (275)
T 1yb2_A          100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD---IGNVRTSRSDIAD-FI  175 (275)
T ss_dssp             ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC---CTTEEEECSCTTT-CC
T ss_pred             HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC---CCcEEEEECchhc-cC
Confidence            45566666777889999999999999999987 55679999999999999999998876 5   4689999999987 55


Q ss_pred             CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCC
Q 019957          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCG  313 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aG  313 (333)
                      ++++||+|++     |++++..+++++.++|||||++++.++...                      ..+++.+.++++|
T Consensus       176 ~~~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~----------------------~~~~~~~~l~~~G  228 (275)
T 1yb2_A          176 SDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFD----------------------QSEKTVLSLSASG  228 (275)
T ss_dssp             CSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHH----------------------HHHHHHHHSGGGT
T ss_pred             cCCCccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCHH----------------------HHHHHHHHHHHCC
Confidence            6778999998     678889999999999999999999885431                      1356777888899


Q ss_pred             CcEEEEE
Q 019957          314 LTNYTSK  320 (333)
Q Consensus       314 f~~v~~~  320 (333)
                      |+.++..
T Consensus       229 f~~~~~~  235 (275)
T 1yb2_A          229 MHHLETV  235 (275)
T ss_dssp             EEEEEEE
T ss_pred             CeEEEEE
Confidence            9887754

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.73  E-value=8.1e-17  Score=134.76  Aligned_cols=136  Identities=18%  Similarity=0.188  Sum_probs=110.9

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      .......+.+.+...++.+|||+|||+|.++..+++.+  .+++++|+++.+++.+++++...+.  ..++.++.+|+.+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~   93 (192)
T 1l3i_A           18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGL--GDNVTLMEGDAPE   93 (192)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTC--CTTEEEEESCHHH
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCC--CcceEEEecCHHH
Confidence            34455666777777778899999999999999999887  4999999999999999999887663  3689999999866


Q ss_pred             CCCCC-CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHH
Q 019957          231 LPFAS-GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLC  309 (333)
Q Consensus       231 lp~~~-~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll  309 (333)
                       ++++ ++||+|++..+++|   ...+++++.++|+|||.+++.++...                      +..++..++
T Consensus        94 -~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~l~~gG~l~~~~~~~~----------------------~~~~~~~~l  147 (192)
T 1l3i_A           94 -ALCKIPDIDIAVVGGSGGE---LQEILRIIKDKLKPGGRIIVTAILLE----------------------TKFEAMECL  147 (192)
T ss_dssp             -HHTTSCCEEEEEESCCTTC---HHHHHHHHHHTEEEEEEEEEEECBHH----------------------HHHHHHHHH
T ss_pred             -hcccCCCCCEEEECCchHH---HHHHHHHHHHhcCCCcEEEEEecCcc----------------------hHHHHHHHH
Confidence             2222 58999999988764   58889999999999999999875421                      235788999


Q ss_pred             HhCCCcE
Q 019957          310 TSCGLTN  316 (333)
Q Consensus       310 ~~aGf~~  316 (333)
                      ++.||.+
T Consensus       148 ~~~g~~~  154 (192)
T 1l3i_A          148 RDLGFDV  154 (192)
T ss_dssp             HHTTCCC
T ss_pred             HHCCCce
Confidence            9999954

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.73  E-value=5.6e-17  Score=149.98  Aligned_cols=154  Identities=17%  Similarity=0.145  Sum_probs=118.2

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .+..+|||||||+|.++..+++.++..+++++|+ +.+++.+++         ..++.++.+|+.+ +++  .||+|++.
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~--~~D~v~~~  258 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG---------NENLNFVGGDMFK-SIP--SADAVLLK  258 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC---------CSSEEEEECCTTT-CCC--CCSEEEEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc---------CCCcEEEeCccCC-CCC--CceEEEEc
Confidence            3567999999999999999999988889999999 788766653         3469999999987 655  49999999


Q ss_pred             cccccCCChH--HHHHHHHHhccC---CcEEEEEEecccCCCcc----hhhHHHHH--hhhccCCCCCHHHHHHHHHhCC
Q 019957          245 AALHCWPSPS--NAVAEISRILRS---GGVFVGTTFLRYTSSTS----LTGRVLRE--RILQNYNYLTEEEIEDLCTSCG  313 (333)
Q Consensus       245 ~vl~h~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~t~~~l~~ll~~aG  313 (333)
                      .+|||++++.  ++|++++++|||   ||++++.++........    .....+.-  ........++.++|.++++++|
T Consensus       259 ~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG  338 (358)
T 1zg3_A          259 WVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAG  338 (358)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTT
T ss_pred             ccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcC
Confidence            9999999987  999999999999   99999988765432211    11111111  0112345679999999999999


Q ss_pred             CcEEEEEEeCeE-EEEEEe
Q 019957          314 LTNYTSKVQQSF-IMFAAQ  331 (333)
Q Consensus       314 f~~v~~~~~~~~-~~~~a~  331 (333)
                      |+++++.....+ .++.++
T Consensus       339 f~~~~~~~~~~~~~vie~~  357 (358)
T 1zg3_A          339 FSSYKITPISGFKSLIEVY  357 (358)
T ss_dssp             CCEEEEEEETTTEEEEEEE
T ss_pred             CCeeEEEecCCCcEEEEEe
Confidence            999987664443 455444

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.73  E-value=3.9e-18  Score=148.50  Aligned_cols=139  Identities=14%  Similarity=0.254  Sum_probs=100.7

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC--CCCCCCcceEE
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVH  242 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~  242 (333)
                      .++.+|||||||+|.++..+++.+ ..+++|+|+|+.+++.|+++....    ..++.++.+|+.++  ++++++||+|+
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~fD~V~  133 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAPTLPDGHFDGIL  133 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcC-CCeEEEEcCCHHHHHHHHHHHHhc----CCCeEEEecCHHHhhcccCCCceEEEE
Confidence            457799999999999999997754 348999999999999999987664    35799999999887  78889999999


Q ss_pred             e-cccc--c--cCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcE
Q 019957          243 A-GAAL--H--CWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN  316 (333)
Q Consensus       243 ~-~~vl--~--h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~  316 (333)
                      + ...+  +  |..+...++++++++|||||+|++.+....       ........ ........++....+.++||+.
T Consensus       134 ~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~l~~aGF~~  204 (236)
T 1zx0_A          134 YDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSW-------GELMKSKY-SDITIMFEETQVPALLEAGFRR  204 (236)
T ss_dssp             ECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHH-------HHHTTTTC-SCHHHHHHHHTHHHHHHTTCCG
T ss_pred             ECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcH-------HHhhchhh-hhhhhhccHHHHHHHHHCCCCC
Confidence            9 5543  1  222334779999999999999998764421       00000000 0011111345567888999984

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.73  E-value=1.2e-16  Score=137.92  Aligned_cols=149  Identities=14%  Similarity=0.125  Sum_probs=111.3

Q ss_pred             hcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC---CCCCCCC
Q 019957          162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---LPFASGF  237 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~---lp~~~~~  237 (333)
                      +...++.+|||+|||+|.++..+++. ++...|+|+|+++.|++.++++...     ..++..+.+|...   .++..++
T Consensus        73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~-----~~ni~~V~~d~~~p~~~~~~~~~  147 (233)
T 4df3_A           73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD-----RRNIFPILGDARFPEKYRHLVEG  147 (233)
T ss_dssp             CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT-----CTTEEEEESCTTCGGGGTTTCCC
T ss_pred             cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh-----hcCeeEEEEeccCccccccccce
Confidence            45678999999999999999999987 7888999999999999999988765     4589999998865   3456788


Q ss_pred             cceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEE
Q 019957          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNY  317 (333)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v  317 (333)
                      +|+|++.  +.|..++..++.++.++|||||.+++.......          ....+. ..  ...+..+.|+++||+.+
T Consensus       148 vDvVf~d--~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~----------d~~~p~-~~--~~~~ev~~L~~~GF~l~  212 (233)
T 4df3_A          148 VDGLYAD--VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSI----------DVTTEP-SE--VYKREIKTLMDGGLEIK  212 (233)
T ss_dssp             EEEEEEC--CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHH----------HHHTCC-CH--HHHHHHHHHHHTTCCEE
T ss_pred             EEEEEEe--ccCChhHHHHHHHHHHhccCCCEEEEEEecccC----------CCCCCh-HH--HHHHHHHHHHHCCCEEE
Confidence            9999863  455567788999999999999999987643310          000000 00  11344567889999998


Q ss_pred             EEEEeCe----EEEEEE
Q 019957          318 TSKVQQS----FIMFAA  330 (333)
Q Consensus       318 ~~~~~~~----~~~~~a  330 (333)
                      +......    .+++++
T Consensus       213 e~i~L~pf~~~H~lv~~  229 (233)
T 4df3_A          213 DVVHLDPFDRDHAMIYA  229 (233)
T ss_dssp             EEEECTTTSTTEEEEEE
T ss_pred             EEEccCCCCCceEEEEE
Confidence            8765444    355554

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.73  E-value=1.1e-16  Score=137.10  Aligned_cols=107  Identities=21%  Similarity=0.244  Sum_probs=92.2

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--CCCCCcceEEe
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHA  243 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~  243 (333)
                      ++.+|||||||+|.++..+++..+..+++|+|+++.+++.|++++...+   ..++.++.+|+..++  +++++||+|++
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~D~i~~  117 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG---VPNIKLLWVDGSDLTDYFEDGEIDRLYL  117 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC---CSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcC---CCCEEEEeCCHHHHHhhcCCCCCCEEEE
Confidence            4679999999999999999999887899999999999999999988776   468999999998876  67789999999


Q ss_pred             ccccccCC--------ChHHHHHHHHHhccCCcEEEEEEe
Q 019957          244 GAALHCWP--------SPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       244 ~~vl~h~~--------d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      .....+..        ....+++++.++|||||.+++.+.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  157 (214)
T 1yzh_A          118 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD  157 (214)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred             ECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence            86543322        125789999999999999999774

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.72  E-value=1.6e-16  Score=138.76  Aligned_cols=129  Identities=15%  Similarity=0.025  Sum_probs=105.2

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC---CCCcceE
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAV  241 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~V  241 (333)
                      .++.+|||||||+|.++..++...+..+|+|+|+|+.+++.++++....+   ..++.++++|+.++++.   +++||+|
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~fD~V  145 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ---LENTTFCHDRAETFGQRKDVRESYDIV  145 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT---CSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCEEEEeccHHHhcccccccCCccEE
Confidence            35779999999999999999977667799999999999999999988876   34799999999887653   5799999


Q ss_pred             EeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                      ++..    +.++..+++++.++|||||.+++......       ..             ..+++...++++||++++..
T Consensus       146 ~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~g~~~-------~~-------------~~~~~~~~l~~~g~~~~~~~  200 (240)
T 1xdz_A          146 TARA----VARLSVLSELCLPLVKKNGLFVALKAASA-------EE-------------ELNAGKKAITTLGGELENIH  200 (240)
T ss_dssp             EEEC----CSCHHHHHHHHGGGEEEEEEEEEEECC-C-------HH-------------HHHHHHHHHHHTTEEEEEEE
T ss_pred             EEec----cCCHHHHHHHHHHhcCCCCEEEEEeCCCc-------hH-------------HHHHHHHHHHHcCCeEeEEE
Confidence            9976    46789999999999999999988642110       00             12467788999999887753

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.72  E-value=3.4e-16  Score=129.34  Aligned_cols=129  Identities=16%  Similarity=0.150  Sum_probs=104.5

Q ss_pred             HHHHHHHhhcc--cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          154 EFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       154 ~~~~~~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ..+.+.+.+..  .++.+|||+|||+|.++..+++.+   +++|+|+|+.+++.            ..++.++++|+.+ 
T Consensus         9 ~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~------------~~~~~~~~~d~~~-   72 (170)
T 3q87_B            9 DTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES------------HRGGNLVRADLLC-   72 (170)
T ss_dssp             HHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT------------CSSSCEEECSTTT-
T ss_pred             cHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc------------ccCCeEEECChhh-
Confidence            34445555544  567799999999999999999886   99999999999876            1257899999987 


Q ss_pred             CCCCCCcceEEeccccccCCCh---------HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCH
Q 019957          232 PFASGFVDAVHAGAALHCWPSP---------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTE  302 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~---------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  302 (333)
                      ++.+++||+|+++..+++..+.         ..+++++.+.| |||.+++.++..                      .+.
T Consensus        73 ~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~----------------------~~~  129 (170)
T 3q87_B           73 SINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA----------------------NRP  129 (170)
T ss_dssp             TBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG----------------------GCH
T ss_pred             hcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC----------------------CCH
Confidence            5566899999999988877665         57889999999 999999988543                      245


Q ss_pred             HHHHHHHHhCCCcEEEEEE
Q 019957          303 EEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       303 ~~l~~ll~~aGf~~v~~~~  321 (333)
                      +++.++++++||+.+....
T Consensus       130 ~~l~~~l~~~gf~~~~~~~  148 (170)
T 3q87_B          130 KEVLARLEERGYGTRILKV  148 (170)
T ss_dssp             HHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHHCCCcEEEEEe
Confidence            7899999999999877543

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.72  E-value=4.5e-16  Score=129.27  Aligned_cols=135  Identities=16%  Similarity=0.177  Sum_probs=111.8

Q ss_pred             CcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC
Q 019957          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (333)
Q Consensus       150 ~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (333)
                      ......+.+.+.+...++.+|||+|||+|.++..+++  +..+++|+|+++.+++.+++++...+   ..++.++.+|+.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~d~~   93 (183)
T 2yxd_A           19 TKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFN---IKNCQIIKGRAE   93 (183)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTT---CCSEEEEESCHH
T ss_pred             CHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcC---CCcEEEEECCcc
Confidence            3445556777777777788999999999999999998  35699999999999999999988876   367999999997


Q ss_pred             CCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHH
Q 019957          230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLC  309 (333)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll  309 (333)
                      + ++++++||+|++..+    .++..+++++.++  |||.+++.++...                      +..++.+.+
T Consensus        94 ~-~~~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~~----------------------~~~~~~~~l  144 (183)
T 2yxd_A           94 D-VLDKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVLE----------------------NAAKIINEF  144 (183)
T ss_dssp             H-HGGGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCHH----------------------HHHHHHHHH
T ss_pred             c-cccCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEecccc----------------------cHHHHHHHH
Confidence            7 666689999999988    6788899999998  9999999885432                      135788999


Q ss_pred             HhCCCcEEE
Q 019957          310 TSCGLTNYT  318 (333)
Q Consensus       310 ~~aGf~~v~  318 (333)
                      +++||.+..
T Consensus       145 ~~~g~~~~~  153 (183)
T 2yxd_A          145 ESRGYNVDA  153 (183)
T ss_dssp             HHTTCEEEE
T ss_pred             HHcCCeEEE
Confidence            999987654

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.72  E-value=8.3e-17  Score=139.18  Aligned_cols=117  Identities=14%  Similarity=0.227  Sum_probs=99.5

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC-CCCCCC-CCCcceEE
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFA-SGFVDAVH  242 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~-~~~fD~V~  242 (333)
                      .++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.++++        .+++.++++|+ ..+|+. +++||+|+
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~~~~~~~fD~v~  116 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAA--RWAAYDFSPELLKLARAN--------APHADVYEWNGKGELPAGLGAPFGLIV  116 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHH--------CTTSEEEECCSCSSCCTTCCCCEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHh--------CCCceEEEcchhhccCCcCCCCEEEEE
Confidence            4578999999999999999999854  999999999999999987        45799999999 678887 88999999


Q ss_pred             eccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                      +.      .++..+++++.++|||||.++  .+                     ....+.+++..+++++||+++...
T Consensus       117 ~~------~~~~~~l~~~~~~LkpgG~l~--~~---------------------~~~~~~~~~~~~l~~~Gf~~~~~~  165 (226)
T 3m33_A          117 SR------RGPTSVILRLPELAAPDAHFL--YV---------------------GPRLNVPEVPERLAAVGWDIVAED  165 (226)
T ss_dssp             EE------SCCSGGGGGHHHHEEEEEEEE--EE---------------------ESSSCCTHHHHHHHHTTCEEEEEE
T ss_pred             eC------CCHHHHHHHHHHHcCCCcEEE--Ee---------------------CCcCCHHHHHHHHHHCCCeEEEEE
Confidence            87      467788999999999999999  11                     113456789999999999987743

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.71  E-value=1.1e-16  Score=142.20  Aligned_cols=138  Identities=11%  Similarity=0.025  Sum_probs=106.1

Q ss_pred             chhHHHHhhHHhhcccC--------CCCCcHHHHH---HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeC
Q 019957          130 FVSFLYERGWRQNFNRS--------GFPGPDEEFK---MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF  198 (333)
Q Consensus       130 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~---~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~  198 (333)
                      .....++..|-+.+...        .++..+....   .-...+...++.+|||||||+|.++..+..+.++.+|+|+|+
T Consensus        75 ~~~~~~E~~wa~~l~~~~~p~~~l~~fpy~~~~~~l~~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDi  154 (298)
T 3fpf_A           75 NLGMKLEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEI  154 (298)
T ss_dssp             HHHHHHHHHHHHHHHHCSSHHHHHHTSTTHHHHHHHHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEES
T ss_pred             HHHHHHHHHHHHHHhccCChHHhhccCCCcccHHHHHHHHHHHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEEC
Confidence            34456777888876332        2333333222   222345667889999999999977655444444679999999


Q ss_pred             CHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          199 SENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       199 s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      |+.+++.|+++++..|   ..++.++++|+.+++  +++||+|++...   .+++.++++++.++|||||+|++...
T Consensus       155 s~~~l~~Ar~~~~~~g---l~~v~~v~gDa~~l~--d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          155 EPDIAELSRKVIEGLG---VDGVNVITGDETVID--GLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             SHHHHHHHHHHHHHHT---CCSEEEEESCGGGGG--GCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CHHHHHHHHHHHHhcC---CCCeEEEECchhhCC--CCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            9999999999998877   468999999998876  789999998654   57889999999999999999999774

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.71  E-value=5.3e-17  Score=134.79  Aligned_cols=116  Identities=17%  Similarity=0.166  Sum_probs=96.3

Q ss_pred             cccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC---CCCCcc
Q 019957          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFVD  239 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---~~~~fD  239 (333)
                      ...++.+|||||||.                +++|+|+.|++.|+++..       .++.++++|+.++++   ++++||
T Consensus         9 g~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~-------~~~~~~~~d~~~~~~~~~~~~~fD   65 (176)
T 2ld4_A            9 GISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTG-------NEGRVSVENIKQLLQSAHKESSFD   65 (176)
T ss_dssp             TCCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTT-------TTSEEEEEEGGGGGGGCCCSSCEE
T ss_pred             CCCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcc-------cCcEEEEechhcCccccCCCCCEe
Confidence            445688999999986                239999999999998742       258999999999887   788999


Q ss_pred             eEEeccccccC-CChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957          240 AVHAGAALHCW-PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       240 ~V~~~~vl~h~-~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      +|++..++||+ +++..++++++++|||||+|++..+......             ......+.+++..+++++||
T Consensus        66 ~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           66 IILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVD-------------NNSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             EEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSC-------------SSSSSCCHHHHHHHHHHTTC
T ss_pred             EEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccc-------------cccccCCHHHHHHHHHHCCC
Confidence            99999999999 9999999999999999999999765432100             12334688999999999999

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.71  E-value=3.3e-16  Score=139.57  Aligned_cols=152  Identities=12%  Similarity=0.121  Sum_probs=117.0

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (333)
                      ..++.+.+.+. .++.+|||+|||+|.++..++...+..+++|+|+|+.+++.++++....+   ..++.++.+|+.+. 
T Consensus        97 ~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~---~~~v~~~~~d~~~~-  171 (276)
T 2b3t_A           97 CLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA---IKNIHILQSDWFSA-  171 (276)
T ss_dssp             HHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT---CCSEEEECCSTTGG-
T ss_pred             HHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CCceEEEEcchhhh-
Confidence            34455555554 45679999999999999999988777799999999999999999988876   34799999999763 


Q ss_pred             CCCCCcceEEec-------------cccccCC------------ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhH
Q 019957          233 FASGFVDAVHAG-------------AALHCWP------------SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR  287 (333)
Q Consensus       233 ~~~~~fD~V~~~-------------~vl~h~~------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~  287 (333)
                      +.+++||+|+++             .+++|.+            +...+++++.++|||||++++...            
T Consensus       172 ~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~------------  239 (276)
T 2b3t_A          172 LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG------------  239 (276)
T ss_dssp             GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC------------
T ss_pred             cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC------------
Confidence            336789999997             4555543            336789999999999999998642            


Q ss_pred             HHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEE--eCeEEEEEEeC
Q 019957          288 VLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV--QQSFIMFAAQK  332 (333)
Q Consensus       288 ~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~--~~~~~~~~a~k  332 (333)
                                 +.+.+++.++++++||+.++...  .+.--++.++|
T Consensus       240 -----------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~  275 (276)
T 2b3t_A          240 -----------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY  275 (276)
T ss_dssp             -----------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred             -----------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence                       23567899999999998765432  33444555554

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.71  E-value=2.4e-16  Score=138.69  Aligned_cols=142  Identities=13%  Similarity=0.067  Sum_probs=116.8

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhc-CcCCCCCeEEEEc
Q 019957          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRA  226 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~  226 (333)
                      .........+...+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.+++++... +   ..++.++.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g---~~~v~~~~~  155 (258)
T 2pwy_A           79 PTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ---VENVRFHLG  155 (258)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC---CCCEEEEES
T ss_pred             cccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC---CCCEEEEEC
Confidence            334445566777777778889999999999999999998 66679999999999999999998776 5   468999999


Q ss_pred             cCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHH
Q 019957          227 DVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIE  306 (333)
Q Consensus       227 d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~  306 (333)
                      |+.+.++++++||+|++     +.+++..+++++.++|||||.+++.++...                      ...++.
T Consensus       156 d~~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----------------------~~~~~~  208 (258)
T 2pwy_A          156 KLEEAELEEAAYDGVAL-----DLMEPWKVLEKAALALKPDRFLVAYLPNIT----------------------QVLELV  208 (258)
T ss_dssp             CGGGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESCHH----------------------HHHHHH
T ss_pred             chhhcCCCCCCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCHH----------------------HHHHHH
Confidence            99888777789999997     467888999999999999999999885431                      124667


Q ss_pred             HHHHhCCCcEEEEE
Q 019957          307 DLCTSCGLTNYTSK  320 (333)
Q Consensus       307 ~ll~~aGf~~v~~~  320 (333)
                      ..++++||..++..
T Consensus       209 ~~l~~~gf~~~~~~  222 (258)
T 2pwy_A          209 RAAEAHPFRLERVL  222 (258)
T ss_dssp             HHHTTTTEEEEEEE
T ss_pred             HHHHHCCCceEEEE
Confidence            77888999876643

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.71  E-value=2.9e-16  Score=134.28  Aligned_cols=144  Identities=13%  Similarity=0.066  Sum_probs=101.8

Q ss_pred             cccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC----CCCCCCc
Q 019957          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFV  238 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~f  238 (333)
                      ...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+.+..+.     ..++.++.+|+...    ++. ++|
T Consensus        54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~-----~~~v~~~~~d~~~~~~~~~~~-~~f  127 (210)
T 1nt2_A           54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-----RNNIIPLLFDASKPWKYSGIV-EKV  127 (210)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-----CSSEEEECSCTTCGGGTTTTC-CCE
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc-----CCCeEEEEcCCCCchhhcccc-cce
Confidence            34567899999999999999999886456999999999988766665544     34788888998763    444 789


Q ss_pred             ceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHH----HHHHhCCC
Q 019957          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIE----DLCTSCGL  314 (333)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~----~ll~~aGf  314 (333)
                      |+|++.. .++ .+...+++++.++|||||+|++......                 .....+.+++.    +.++++ |
T Consensus       128 D~V~~~~-~~~-~~~~~~l~~~~r~LkpgG~l~i~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~-f  187 (210)
T 1nt2_A          128 DLIYQDI-AQK-NQIEILKANAEFFLKEKGEVVIMVKARS-----------------IDSTAEPEEVFKSVLKEMEGD-F  187 (210)
T ss_dssp             EEEEECC-CST-THHHHHHHHHHHHEEEEEEEEEEEEHHH-----------------HCTTSCHHHHHHHHHHHHHTT-S
T ss_pred             eEEEEec-cCh-hHHHHHHHHHHHHhCCCCEEEEEEecCC-----------------ccccCCHHHHHHHHHHHHHhh-c
Confidence            9999872 222 2233458999999999999999864321                 01112344432    237888 9


Q ss_pred             cEEEEEEeCe----EEEEEEeC
Q 019957          315 TNYTSKVQQS----FIMFAAQK  332 (333)
Q Consensus       315 ~~v~~~~~~~----~~~~~a~k  332 (333)
                      ++++......    .++++++|
T Consensus       188 ~~~~~~~~~p~~~~h~~~~~~~  209 (210)
T 1nt2_A          188 KIVKHGSLMPYHRDHIFIHAYR  209 (210)
T ss_dssp             EEEEEEECTTTCTTEEEEEEEE
T ss_pred             EEeeeecCCCCCCCcEEEEEEc
Confidence            9998766533    25666654

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.71  E-value=2.2e-16  Score=138.79  Aligned_cols=141  Identities=18%  Similarity=0.261  Sum_probs=116.1

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc
Q 019957          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (333)
                      .........+...+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.|+++++..++  ..++.++.+|
T Consensus        76 ~~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~--~~~v~~~~~d  153 (255)
T 3mb5_A           76 IVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF--DDRVTIKLKD  153 (255)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC--TTTEEEECSC
T ss_pred             cccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC--CCceEEEECc
Confidence            334455567777787788899999999999999999998 7777999999999999999999988774  3459999999


Q ss_pred             CCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHH
Q 019957          228 VCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIED  307 (333)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~  307 (333)
                      +.+. +++++||+|++     +.+++..+++++.++|||||++++..+...                      ..+++.+
T Consensus       154 ~~~~-~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~----------------------~~~~~~~  205 (255)
T 3mb5_A          154 IYEG-IEEENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTPCSN----------------------QVMRLHE  205 (255)
T ss_dssp             GGGC-CCCCSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEESSHH----------------------HHHHHHH
T ss_pred             hhhc-cCCCCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEECCHH----------------------HHHHHHH
Confidence            9864 56778999997     567888899999999999999999875431                      1356778


Q ss_pred             HHHhCC--CcEEEE
Q 019957          308 LCTSCG--LTNYTS  319 (333)
Q Consensus       308 ll~~aG--f~~v~~  319 (333)
                      .++++|  |..++.
T Consensus       206 ~l~~~g~~f~~~~~  219 (255)
T 3mb5_A          206 KLREFKDYFMKPRT  219 (255)
T ss_dssp             HHHHTGGGBSCCEE
T ss_pred             HHHHcCCCccccEE
Confidence            889999  876654

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.70  E-value=1.5e-16  Score=136.39  Aligned_cols=108  Identities=18%  Similarity=0.220  Sum_probs=91.0

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--CCCCCcceEEe
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHA  243 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~  243 (333)
                      ++.+|||||||+|.++..+++..+..+++|+|+|+.+++.|++++...+   ..++.++.+|+..++  +++++||.|++
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~---~~nv~~~~~d~~~l~~~~~~~~~d~v~~  114 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE---AQNVKLLNIDADTLTDVFEPGEVKRVYL  114 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC---CSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcC---CCCEEEEeCCHHHHHhhcCcCCcCEEEE
Confidence            4679999999999999999999888899999999999999999988876   468999999998865  66789999987


Q ss_pred             ccccccCCC--------hHHHHHHHHHhccCCcEEEEEEec
Q 019957          244 GAALHCWPS--------PSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       244 ~~vl~h~~d--------~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      .....+...        ...+++++.++|||||.|++.+..
T Consensus       115 ~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~  155 (213)
T 2fca_A          115 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN  155 (213)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred             ECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC
Confidence            654332221        257899999999999999998743

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.70  E-value=2e-17  Score=143.03  Aligned_cols=150  Identities=15%  Similarity=0.162  Sum_probs=97.9

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCC-HHHHHHH---HHHHHhcCcCCCCCeEEEEccCCCCCCC-CCCcc
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFS-ENMLRQC---YDFIKQDNTILTSNLALVRADVCRLPFA-SGFVD  239 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s-~~~~~~a---~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD  239 (333)
                      .++.+|||||||+|.++..+++..+..+|+|+|+| +.+++.|   +++....+   ..++.++.+|+..+|.. .+.+|
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~---~~~v~~~~~d~~~l~~~~~d~v~   99 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGG---LSNVVFVIAAAESLPFELKNIAD   99 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTC---CSSEEEECCBTTBCCGGGTTCEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEcCHHHhhhhccCeEE
Confidence            45679999999999999999987777799999999 6676666   76666655   46899999999998632 13344


Q ss_pred             eEEecccc----cc-CCChHHHHHHHHHhccCCcEEEEEEecccC-CCcchhhHHHHHhhhc-cCCCCCHHHHHHHHHhC
Q 019957          240 AVHAGAAL----HC-WPSPSNAVAEISRILRSGGVFVGTTFLRYT-SSTSLTGRVLRERILQ-NYNYLTEEEIEDLCTSC  312 (333)
Q Consensus       240 ~V~~~~vl----~h-~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~t~~~l~~ll~~a  312 (333)
                      .|.+....    +| ..++..++++++++|||||++++....... ...+.   .. ...+. ...++..+++..+++++
T Consensus       100 ~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~el~~~l~~a  175 (225)
T 3p2e_A          100 SISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEI---KK-RGLPLLSKAYFLSEQYKAELSNS  175 (225)
T ss_dssp             EEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC------------------CCHHHHHSHHHHHHHHHH
T ss_pred             EEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchh---hh-cCCCCCChhhcchHHHHHHHHHc
Confidence            44443321    11 134467899999999999999994433221 00010   00 01110 00112223599999999


Q ss_pred             CCcEEEEEE
Q 019957          313 GLTNYTSKV  321 (333)
Q Consensus       313 Gf~~v~~~~  321 (333)
                      ||++.....
T Consensus       176 Gf~v~~~~~  184 (225)
T 3p2e_A          176 GFRIDDVKE  184 (225)
T ss_dssp             TCEEEEEEE
T ss_pred             CCCeeeeee
Confidence            999887543

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.70  E-value=1.1e-15  Score=132.21  Aligned_cols=132  Identities=16%  Similarity=0.148  Sum_probs=104.8

Q ss_pred             ccCCCeEEEEcCC-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-CCCCCCcceE
Q 019957          164 SAQGGLLVDVSCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAV  241 (333)
Q Consensus       164 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~V  241 (333)
                      ..++.+|||+||| +|.++..+++.. ..+|+|+|+++.+++.+++++...+   . ++.++.+|+..+ ++.+++||+|
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~-~v~~~~~d~~~~~~~~~~~fD~I  127 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNN---S-NVRLVKSNGGIIKGVVEGTFDVI  127 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTT---C-CCEEEECSSCSSTTTCCSCEEEE
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhC---C-CcEEEeCCchhhhhcccCceeEE
Confidence            3467899999999 999999999884 4499999999999999999998875   3 899999997543 3456899999


Q ss_pred             EeccccccCCC-------------------hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCH
Q 019957          242 HAGAALHCWPS-------------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTE  302 (333)
Q Consensus       242 ~~~~vl~h~~d-------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  302 (333)
                      +++-.+++..+                   ...+++++.++|||||++++..+...                     ...
T Consensus       128 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------------~~~  186 (230)
T 3evz_A          128 FSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE---------------------KLL  186 (230)
T ss_dssp             EECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH---------------------HHH
T ss_pred             EECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH---------------------hHH
Confidence            99866655433                   36789999999999999999875431                     123


Q ss_pred             HHHHHHHHhCCCcEEEEEE
Q 019957          303 EEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       303 ~~l~~ll~~aGf~~v~~~~  321 (333)
                      +++.++++++||++.....
T Consensus       187 ~~~~~~l~~~g~~~~~~~~  205 (230)
T 3evz_A          187 NVIKERGIKLGYSVKDIKF  205 (230)
T ss_dssp             HHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHHcCCceEEEEe
Confidence            6888999999997766543

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.70  E-value=2.1e-16  Score=143.36  Aligned_cols=154  Identities=16%  Similarity=0.203  Sum_probs=113.2

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc----CCCCCeEEEEccCCCCC----CC--C
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT----ILTSNLALVRADVCRLP----FA--S  235 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~----~~~~~i~~~~~d~~~lp----~~--~  235 (333)
                      ++.+|||+|||+|.++..+.+.. ..+++|+|+|+.+++.++++....+.    ....++.++++|+..++    +.  +
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGR-INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCEEEEECCCCcHHHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            56799999999999999998753 56999999999999999998765310    00347899999998875    53  4


Q ss_pred             CCcceEEeccccccC-C---ChHHHHHHHHHhccCCcEEEEEEecccCC--------CcchhhHH-----HH--------
Q 019957          236 GFVDAVHAGAALHCW-P---SPSNAVAEISRILRSGGVFVGTTFLRYTS--------STSLTGRV-----LR--------  290 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~-~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~--------~~~~~~~~-----~~--------  290 (333)
                      ++||+|++..++||+ .   ++..+++++.++|||||.+++.+++....        ...+ +..     +.        
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~  191 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESF-GNEIYTVKFQKKGDYPLF  191 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEE-ECSSEEEEESCSSCCCSS
T ss_pred             CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCcc-CCeeEEEEeCCCCCCCCc
Confidence            589999999999988 4   34689999999999999999999864200        0000 000     00        


Q ss_pred             ---------HhhhccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957          291 ---------ERILQNYNYLTEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       291 ---------~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~  321 (333)
                               ..........+.+++..++++.||+++....
T Consensus       192 ~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~  231 (313)
T 3bgv_A          192 GCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKT  231 (313)
T ss_dssp             CCEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEE
T ss_pred             cceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecC
Confidence                     0000112346789999999999999988643

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.70  E-value=1.5e-16  Score=139.84  Aligned_cols=157  Identities=17%  Similarity=0.080  Sum_probs=112.5

Q ss_pred             HHHHHhhcc-cCCCeEEEEcCCc---CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          156 KMAQEYFKS-AQGGLLVDVSCGS---GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       156 ~~~~~~l~~-~~~~~vLDiGcG~---G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ..+..++.. ....+|||||||+   |.....+.+..|..+|+++|.|+.|++.|++++...+   ..++.++++|+.++
T Consensus        67 ~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~---~~~~~~v~aD~~~~  143 (277)
T 3giw_A           67 NRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP---EGRTAYVEADMLDP  143 (277)
T ss_dssp             HHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS---SSEEEEEECCTTCH
T ss_pred             HHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC---CCcEEEEEecccCh
Confidence            344445543 3446899999997   3444444555678899999999999999999886532   34799999999875


Q ss_pred             C------CCCCCcc-----eEEeccccccCCC---hHHHHHHHHHhccCCcEEEEEEecccCCCc--chhhHHHHHhhhc
Q 019957          232 P------FASGFVD-----AVHAGAALHCWPS---PSNAVAEISRILRSGGVFVGTTFLRYTSST--SLTGRVLRERILQ  295 (333)
Q Consensus       232 p------~~~~~fD-----~V~~~~vl~h~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--~~~~~~~~~~~~~  295 (333)
                      +      ...+.||     .|+++.+|||+++   +..+++++.+.|+|||+|++.+........  ..+...+. ....
T Consensus       144 ~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~-~~g~  222 (277)
T 3giw_A          144 ASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYA-ARNM  222 (277)
T ss_dssp             HHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHH-HTTC
T ss_pred             hhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHH-hcCC
Confidence            2      1134566     5889999999998   578999999999999999999877542111  11111122 1223


Q ss_pred             cCCCCCHHHHHHHHHhCCCcEEE
Q 019957          296 NYNYLTEEEIEDLCTSCGLTNYT  318 (333)
Q Consensus       296 ~~~~~t~~~l~~ll~~aGf~~v~  318 (333)
                      .+.+++.+++..+|.  ||++++
T Consensus       223 p~~~rs~~ei~~~f~--Glelve  243 (277)
T 3giw_A          223 PMRLRTHAEAEEFFE--GLELVE  243 (277)
T ss_dssp             CCCCCCHHHHHHTTT--TSEECT
T ss_pred             CCccCCHHHHHHHhC--CCcccC
Confidence            467889999999995  998654

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.69  E-value=1.7e-16  Score=133.37  Aligned_cols=123  Identities=18%  Similarity=0.117  Sum_probs=100.2

Q ss_pred             HHHHHHHHHhhcc---cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC
Q 019957          152 DEEFKMAQEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (333)
Q Consensus       152 ~~~~~~~~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (333)
                      +...+.+.+.+..   .++.+|||+|||+|.++..++..+ ..+|+|+|+|+.+++.+++++...+   ..++.++++|+
T Consensus        27 ~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~  102 (189)
T 3p9n_A           27 DRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRG-AASVLFVESDQRSAAVIARNIEALG---LSGATLRRGAV  102 (189)
T ss_dssp             HHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEECCHHHHHHHHHHHHHHT---CSCEEEEESCH
T ss_pred             HHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcC---CCceEEEEccH
Confidence            3344445444443   467899999999999999887764 4589999999999999999998876   46899999999


Q ss_pred             CCCC--CCCCCcceEEeccccccC-CChHHHHHHHHH--hccCCcEEEEEEeccc
Q 019957          229 CRLP--FASGFVDAVHAGAALHCW-PSPSNAVAEISR--ILRSGGVFVGTTFLRY  278 (333)
Q Consensus       229 ~~lp--~~~~~fD~V~~~~vl~h~-~d~~~~l~~~~r--~LkpgG~l~i~~~~~~  278 (333)
                      .+++  +.+++||+|++...+++. .+...+++++.+  +|||||++++......
T Consensus       103 ~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          103 AAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTC  157 (189)
T ss_dssp             HHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred             HHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence            7754  346899999999887775 667889999999  9999999999887653

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.69  E-value=4.9e-16  Score=129.86  Aligned_cols=108  Identities=19%  Similarity=0.179  Sum_probs=85.9

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-CCCCCcceEEe
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHA  243 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~  243 (333)
                      .++.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.|++++...+   ..++.++.++...++ +.+++||+|++
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~~--~~v~~vD~s~~~l~~a~~~~~~~~---~~~v~~~~~~~~~l~~~~~~~fD~v~~   95 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGLS--KKVYAFDVQEQALGKTSQRLSDLG---IENTELILDGHENLDHYVREPIRAAIF   95 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHHT---CCCEEEEESCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCcHHHHHhhccCCcCEEEE
Confidence            457899999999999999999884  499999999999999999998876   468999998887753 44778999988


Q ss_pred             c-ccccc--------CCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          244 G-AALHC--------WPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       244 ~-~vl~h--------~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      . ..+++        ..+...+++++.++|||||.+++..+..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  138 (185)
T 3mti_A           96 NLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYG  138 (185)
T ss_dssp             EEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred             eCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence            7 33332        1233578899999999999999987643

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.68  E-value=1.1e-16  Score=132.27  Aligned_cols=164  Identities=10%  Similarity=0.050  Sum_probs=115.9

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC
Q 019957          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (333)
                      +..+.+...+..++.  +..+|||+|||+|.++..+....|..+|+++|+|+.|++.+++++...|.  ..++.+  .|.
T Consensus        34 p~ld~fY~~~~~~l~--~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~--~~~v~~--~d~  107 (200)
T 3fzg_A           34 ATLNDFYTYVFGNIK--HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKT--TIKYRF--LNK  107 (200)
T ss_dssp             GGHHHHHHHHHHHSC--CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCC--SSEEEE--ECC
T ss_pred             HhHHHHHHHHHhhcC--CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC--CccEEE--ecc
Confidence            334555566666664  36799999999999999999988888999999999999999999988774  335555  565


Q ss_pred             CCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHH
Q 019957          229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDL  308 (333)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~l  308 (333)
                      ... ...++||+|++..+|||+.+....+.++.+.|||||+++-...-.-..-.+            ...-.-...|++.
T Consensus       108 ~~~-~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfptksl~Gr~~------------gm~~~Y~~~~~~~  174 (200)
T 3fzg_A          108 ESD-VYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFPIKSLSGKEK------------GMEENYQLWFESF  174 (200)
T ss_dssp             HHH-HTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEECCCCC--CT------------TCCCCHHHHHHHH
T ss_pred             ccc-CCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeChHHhcCCCc------------chhhhHHHHHHHh
Confidence            433 246789999999999999777788889999999999888766211100000            1111123456666


Q ss_pred             HHhCCCcEEEEEEeCeEEEEEEeC
Q 019957          309 CTSCGLTNYTSKVQQSFIMFAAQK  332 (333)
Q Consensus       309 l~~aGf~~v~~~~~~~~~~~~a~k  332 (333)
                      + ...+.+++....+.=++++.+|
T Consensus       175 ~-~~~~~~~~~~~~~nEl~y~~~~  197 (200)
T 3fzg_A          175 T-KGWIKILDSKVIGNELVYITSG  197 (200)
T ss_dssp             T-TTTSCEEEEEEETTEEEEEECC
T ss_pred             c-cCcceeeeeeeeCceEEEEEec
Confidence            6 4555666656655555555544

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.68  E-value=5.9e-16  Score=132.00  Aligned_cols=114  Identities=18%  Similarity=0.115  Sum_probs=99.5

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ......+.+.+...++.+|||||||+|.++..+++.+.  +|+++|+++.+++.+++++...+   ..++.++.+|+.+.
T Consensus        63 ~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~  137 (210)
T 3lbf_A           63 PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQ--HVCSVERIKGLQWQARRRLKNLD---LHNVSTRHGDGWQG  137 (210)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEecCHHHHHHHHHHHHHcC---CCceEEEECCcccC
Confidence            34556677777777889999999999999999999854  99999999999999999998876   45899999999887


Q ss_pred             CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      +..+++||+|++..+++|+++      ++.++|||||++++..+.
T Consensus       138 ~~~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          138 WQARAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             CGGGCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred             CccCCCccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence            666789999999999999986      588999999999998876

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.68  E-value=5.1e-16  Score=131.05  Aligned_cols=112  Identities=17%  Similarity=0.266  Sum_probs=92.5

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-CCCCCcceE
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAV  241 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V  241 (333)
                      ..++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.+++++...++  ..++.++++|+.+++ +.+++||+|
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~v   97 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL--IDRVTLIKDGHQNMDKYIDCPVKAV   97 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC--GGGEEEECSCGGGGGGTCCSCEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCCeEEEECCHHHHhhhccCCceEE
Confidence            345789999999999999999887 3456999999999999999999988764  468999999998775 556899999


Q ss_pred             Eeccccc---------cCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          242 HAGAALH---------CWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       242 ~~~~vl~---------h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      ++...+.         +..+...+++++.++|||||++++.++..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~  142 (197)
T 3eey_A           98 MFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG  142 (197)
T ss_dssp             EEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred             EEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence            9876541         11134579999999999999999988654

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.67  E-value=5.7e-17  Score=138.31  Aligned_cols=139  Identities=17%  Similarity=0.076  Sum_probs=89.8

Q ss_pred             HHHHHHhhcc-cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          155 FKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       155 ~~~~~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      ++.+.+.+.. .++.+|||+|||+|.++..+++.++..+++|+|+|+.+++.+++++...+   . ++.++++|+.+ ++
T Consensus        18 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~-~~~~~~~d~~~-~~   92 (215)
T 4dzr_A           18 VEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG---A-VVDWAAADGIE-WL   92 (215)
T ss_dssp             HHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-----------------------CCHHHHHH-HH
T ss_pred             HHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC---C-ceEEEEcchHh-hh
Confidence            3455555544 56789999999999999999999877799999999999999999887654   2 78889999877 55


Q ss_pred             CC-----CCcceEEecccccc------CCCh--------------------HHHHHHHHHhccCCcEEEEEEecccCCCc
Q 019957          234 AS-----GFVDAVHAGAALHC------WPSP--------------------SNAVAEISRILRSGGVFVGTTFLRYTSST  282 (333)
Q Consensus       234 ~~-----~~fD~V~~~~vl~h------~~d~--------------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~  282 (333)
                      .+     ++||+|+++..+++      +...                    ..+++++.++|||||++++.+...     
T Consensus        93 ~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-----  167 (215)
T 4dzr_A           93 IERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH-----  167 (215)
T ss_dssp             HHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT-----
T ss_pred             hhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC-----
Confidence            55     89999999644432      2211                    677889999999999955544221     


Q ss_pred             chhhHHHHHhhhccCCCCCHHHHHHHHH--hCCCcEEEEE
Q 019957          283 SLTGRVLRERILQNYNYLTEEEIEDLCT--SCGLTNYTSK  320 (333)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~t~~~l~~ll~--~aGf~~v~~~  320 (333)
                                       ...+++..+++  +.||..++..
T Consensus       168 -----------------~~~~~~~~~l~~~~~gf~~~~~~  190 (215)
T 4dzr_A          168 -----------------NQADEVARLFAPWRERGFRVRKV  190 (215)
T ss_dssp             -----------------SCHHHHHHHTGGGGGGTEECCEE
T ss_pred             -----------------ccHHHHHHHHHHhhcCCceEEEE
Confidence                             24567888999  9999876643

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.67  E-value=1.3e-15  Score=135.66  Aligned_cols=138  Identities=17%  Similarity=0.206  Sum_probs=112.8

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      ......+...+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.+++++...++  ..++.++.+|+.+
T Consensus        98 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~  175 (277)
T 1o54_A           98 PKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL--IERVTIKVRDISE  175 (277)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC--GGGEEEECCCGGG
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC--CCCEEEEECCHHH
Confidence            344466677777778889999999999999999998 6677999999999999999999887663  3579999999977


Q ss_pred             CCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHH
Q 019957          231 LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCT  310 (333)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~  310 (333)
                      . +++++||+|++     +.+++..+++++.++|+|||.+++.++...                      ...++.+.++
T Consensus       176 ~-~~~~~~D~V~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~----------------------~~~~~~~~l~  227 (277)
T 1o54_A          176 G-FDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTTN----------------------QVQETLKKLQ  227 (277)
T ss_dssp             C-CSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSHH----------------------HHHHHHHHHH
T ss_pred             c-ccCCccCEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCCHH----------------------HHHHHHHHHH
Confidence            6 55678999998     457888999999999999999999885321                      1246667788


Q ss_pred             hCCCcEEEE
Q 019957          311 SCGLTNYTS  319 (333)
Q Consensus       311 ~aGf~~v~~  319 (333)
                      +.||..++.
T Consensus       228 ~~gf~~~~~  236 (277)
T 1o54_A          228 ELPFIRIEV  236 (277)
T ss_dssp             HSSEEEEEE
T ss_pred             HCCCceeEE
Confidence            899987764

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.66  E-value=1.4e-15  Score=134.22  Aligned_cols=137  Identities=11%  Similarity=0.181  Sum_probs=108.4

Q ss_pred             HHHHhhccc-CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--C
Q 019957          157 MAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F  233 (333)
Q Consensus       157 ~~~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~  233 (333)
                      .+..++... ++.+|||+|||+|.++..+++.++. +++|+|+++.+++.|++++...++  ..++.++.+|+.+++  +
T Consensus        39 ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~--~~~v~~~~~D~~~~~~~~  115 (259)
T 3lpm_A           39 LLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQL--EDQIEIIEYDLKKITDLI  115 (259)
T ss_dssp             HHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTC--TTTEEEECSCGGGGGGTS
T ss_pred             HHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCC--cccEEEEECcHHHhhhhh
Confidence            444555555 6889999999999999999998743 999999999999999999988775  557999999998865  4


Q ss_pred             CCCCcceEEeccccccC-----C---------------ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhh
Q 019957          234 ASGFVDAVHAGAALHCW-----P---------------SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI  293 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~-----~---------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~  293 (333)
                      .+++||+|+++-.+.+.     .               +...+++.+.++|||||++++..+.                 
T Consensus       116 ~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-----------------  178 (259)
T 3lpm_A          116 PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP-----------------  178 (259)
T ss_dssp             CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT-----------------
T ss_pred             ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH-----------------
Confidence            57899999996544322     1               2356899999999999999996432                 


Q ss_pred             hccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957          294 LQNYNYLTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       294 ~~~~~~~t~~~l~~ll~~aGf~~v~~  319 (333)
                            ....++...+++.||...+.
T Consensus       179 ------~~~~~~~~~l~~~~~~~~~~  198 (259)
T 3lpm_A          179 ------ERLLDIIDIMRKYRLEPKRI  198 (259)
T ss_dssp             ------TTHHHHHHHHHHTTEEEEEE
T ss_pred             ------HHHHHHHHHHHHCCCceEEE
Confidence                  13467888899999987764

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.66  E-value=2e-15  Score=131.06  Aligned_cols=150  Identities=18%  Similarity=0.192  Sum_probs=105.2

Q ss_pred             hcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC---CCCCCCC
Q 019957          162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---LPFASGF  237 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~---lp~~~~~  237 (333)
                      +...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.+.++.+.     ..++.++.+|+.+   +++.+++
T Consensus        73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~-----~~~v~~~~~d~~~~~~~~~~~~~  147 (233)
T 2ipx_A           73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK-----RTNIIPVIEDARHPHKYRMLIAM  147 (233)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH-----CTTEEEECSCTTCGGGGGGGCCC
T ss_pred             ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc-----cCCeEEEEcccCChhhhcccCCc
Confidence            33456789999999999999999987 3556999999999988877776665     3589999999987   4455779


Q ss_pred             cceEEeccccccCCCh-HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcE
Q 019957          238 VDAVHAGAALHCWPSP-SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN  316 (333)
Q Consensus       238 fD~V~~~~vl~h~~d~-~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~  316 (333)
                      ||+|++...   .++. ..++.++.++|||||.+++..............           ..+. ++ .++|+++||++
T Consensus       148 ~D~V~~~~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~-----------~~~~-~~-~~~l~~~Gf~~  211 (233)
T 2ipx_A          148 VDVIFADVA---QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAE-----------AVFA-SE-VKKMQQENMKP  211 (233)
T ss_dssp             EEEEEECCC---CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHH-----------HHHH-HH-HHTTGGGTEEE
T ss_pred             EEEEEEcCC---CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHH-----------HHHH-HH-HHHHHHCCCce
Confidence            999998544   2222 456889999999999999965432100000000           0122 23 48889999999


Q ss_pred             EEEEEeCe----EEEEEEeC
Q 019957          317 YTSKVQQS----FIMFAAQK  332 (333)
Q Consensus       317 v~~~~~~~----~~~~~a~k  332 (333)
                      ++......    +.++++++
T Consensus       212 ~~~~~~~~~~~~~~~v~~~~  231 (233)
T 2ipx_A          212 QEQLTLEPYERDHAVVVGVY  231 (233)
T ss_dssp             EEEEECTTTSSSEEEEEEEE
T ss_pred             EEEEecCCccCCcEEEEEEe
Confidence            88544332    45555543

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.66  E-value=1.3e-15  Score=129.45  Aligned_cols=132  Identities=20%  Similarity=0.171  Sum_probs=104.3

Q ss_pred             HHHHHHhhccc---CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          155 FKMAQEYFKSA---QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       155 ~~~~~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      .+.+.+.+...   ++.+|||+|||+|.++..++...+..+++|+|+|+.+++.+++++...+   ..++.++.+|+.+.
T Consensus        51 ~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~  127 (207)
T 1jsx_A           51 VRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK---LENIEPVQSRVEEF  127 (207)
T ss_dssp             HHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT---CSSEEEEECCTTTS
T ss_pred             HHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEecchhhC
Confidence            34444444322   3679999999999999999998777799999999999999999988776   34599999999887


Q ss_pred             CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHh
Q 019957          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTS  311 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~  311 (333)
                      + +.++||+|++..    +.+...+++++.++|+|||.+++....                       ...+++..++. 
T Consensus       128 ~-~~~~~D~i~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~~-----------------------~~~~~~~~~~~-  178 (207)
T 1jsx_A          128 P-SEPPFDGVISRA----FASLNDMVSWCHHLPGEQGRFYALKGQ-----------------------MPEDEIALLPE-  178 (207)
T ss_dssp             C-CCSCEEEEECSC----SSSHHHHHHHHTTSEEEEEEEEEEESS-----------------------CCHHHHHTSCT-
T ss_pred             C-ccCCcCEEEEec----cCCHHHHHHHHHHhcCCCcEEEEEeCC-----------------------CchHHHHHHhc-
Confidence            6 457899999854    356789999999999999999997421                       23456666655 


Q ss_pred             CCCcEEEE
Q 019957          312 CGLTNYTS  319 (333)
Q Consensus       312 aGf~~v~~  319 (333)
                       ||+.++.
T Consensus       179 -g~~~~~~  185 (207)
T 1jsx_A          179 -EYQVESV  185 (207)
T ss_dssp             -TEEEEEE
T ss_pred             -CCceeee
Confidence             9988763

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.66  E-value=5.1e-15  Score=127.93  Aligned_cols=157  Identities=11%  Similarity=0.056  Sum_probs=106.7

Q ss_pred             HHHHHHhhc---ccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          155 FKMAQEYFK---SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       155 ~~~~~~~l~---~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      ...+...+.   ..++.+|||+|||+|.++..+++. ++...|+|+|+++.+++...+....     ..++.++.+|+..
T Consensus        62 a~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-----r~nv~~i~~Da~~  136 (232)
T 3id6_C           62 AGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-----RPNIFPLLADARF  136 (232)
T ss_dssp             HHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-----CTTEEEEECCTTC
T ss_pred             HHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCeEEEEccccc
Confidence            344444443   667899999999999999999876 5567999999999987655544433     4589999999876


Q ss_pred             CC---CCCCCcceEEeccccccCCChHHHH-HHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHH
Q 019957          231 LP---FASGFVDAVHAGAALHCWPSPSNAV-AEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIE  306 (333)
Q Consensus       231 lp---~~~~~fD~V~~~~vl~h~~d~~~~l-~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~  306 (333)
                      ..   ...++||+|++....   ++....+ ..+.++|||||.|++......   .       .... ....  ..++..
T Consensus       137 ~~~~~~~~~~~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisik~~~---~-------d~t~-~~~e--~~~~~~  200 (232)
T 3id6_C          137 PQSYKSVVENVDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARS---I-------DVTK-DPKE--IYKTEV  200 (232)
T ss_dssp             GGGTTTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC-----------------C-CSSS--STTHHH
T ss_pred             chhhhccccceEEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEccCC---c-------ccCC-CHHH--HHHHHH
Confidence            42   124689999987553   5555544 455669999999999853221   0       0000 0011  114566


Q ss_pred             HHHHhCCCcEEEEEEeCeE----EEEEEeC
Q 019957          307 DLCTSCGLTNYTSKVQQSF----IMFAAQK  332 (333)
Q Consensus       307 ~ll~~aGf~~v~~~~~~~~----~~~~a~k  332 (333)
                      +.|+++||++++.....+|    ++++++|
T Consensus       201 ~~L~~~gf~~~~~~~l~p~~~~h~~v~~~~  230 (232)
T 3id6_C          201 EKLENSNFETIQIINLDPYDKDHAIVLSKY  230 (232)
T ss_dssp             HHHHHTTEEEEEEEECTTTCSSCEEEEEEE
T ss_pred             HHHHHCCCEEEEEeccCCCcCceEEEEEEe
Confidence            7888999999997765444    6666665

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.65  E-value=3.6e-16  Score=134.49  Aligned_cols=109  Identities=15%  Similarity=0.156  Sum_probs=91.4

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-C--CCCCCcceEE
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P--FASGFVDAVH  242 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p--~~~~~fD~V~  242 (333)
                      ++.+|||||||+|.++..+++.++...|+|+|+|+.+++.|++++...+   ..++.++.+|+.++ +  +++++||.|+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~---l~nv~~~~~Da~~~l~~~~~~~~~d~v~  110 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEG---LSNLRVMCHDAVEVLHKMIPDNSLRMVQ  110 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTT---CSSEEEECSCHHHHHHHHSCTTCEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhC---CCcEEEEECCHHHHHHHHcCCCChheEE
Confidence            4679999999999999999999888899999999999999999988876   46799999998774 3  6688999999


Q ss_pred             eccccccCCCh--------HHHHHHHHHhccCCcEEEEEEecc
Q 019957          243 AGAALHCWPSP--------SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       243 ~~~vl~h~~d~--------~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      +.+...+....        ..+++++.++|||||+|++.+...
T Consensus       111 ~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~  153 (218)
T 3dxy_A          111 LFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWE  153 (218)
T ss_dssp             EESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred             EeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCH
Confidence            87543332221        258999999999999999988543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.65  E-value=3.6e-15  Score=128.12  Aligned_cols=136  Identities=10%  Similarity=0.068  Sum_probs=110.5

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (333)
Q Consensus       155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (333)
                      ++.+.+++.  ++.+|||||||+|.++..+++.++..+|+++|+++.+++.|++++..+++  ..++.+..+|..+...+
T Consensus        12 L~~i~~~v~--~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl--~~~I~~~~gD~l~~~~~   87 (230)
T 3lec_A           12 LQKVANYVP--KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL--TSKIDVRLANGLSAFEE   87 (230)
T ss_dssp             HHHHHTTSC--TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTC--TTTEEEEECSGGGGCCG
T ss_pred             HHHHHHhCC--CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECchhhcccc
Confidence            355555654  46799999999999999999998777899999999999999999999886  56799999999876544


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      ++.||+|+..++.-.  -...+|.+..+.|+++|.|++....                        ..+.++++|.++||
T Consensus        88 ~~~~D~IviaGmGg~--lI~~IL~~~~~~l~~~~~lIlqp~~------------------------~~~~lr~~L~~~Gf  141 (230)
T 3lec_A           88 ADNIDTITICGMGGR--LIADILNNDIDKLQHVKTLVLQPNN------------------------REDDLRKWLAANDF  141 (230)
T ss_dssp             GGCCCEEEEEEECHH--HHHHHHHHTGGGGTTCCEEEEEESS------------------------CHHHHHHHHHHTTE
T ss_pred             ccccCEEEEeCCchH--HHHHHHHHHHHHhCcCCEEEEECCC------------------------ChHHHHHHHHHCCC
Confidence            447999887655432  1356788888999999999886631                        35789999999999


Q ss_pred             cEEEEE
Q 019957          315 TNYTSK  320 (333)
Q Consensus       315 ~~v~~~  320 (333)
                      .++++.
T Consensus       142 ~i~~E~  147 (230)
T 3lec_A          142 EIVAED  147 (230)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            998865

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.64  E-value=6.2e-15  Score=131.47  Aligned_cols=137  Identities=14%  Similarity=0.131  Sum_probs=109.2

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      ..+...+  .++.+|||+|||+|.++..+++.+.. +|+|+|+|+.+++.|++++..+++  ..++.++++|+.+++. +
T Consensus       117 ~~l~~~~--~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~--~~~v~~~~~D~~~~~~-~  190 (278)
T 2frn_A          117 VRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKV--EDRMSAYNMDNRDFPG-E  190 (278)
T ss_dssp             HHHHHHC--CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTC--TTTEEEECSCTTTCCC-C
T ss_pred             HHHHHhC--CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCC--CceEEEEECCHHHhcc-c
Confidence            3444443  34789999999999999999998753 799999999999999999998875  4569999999998876 6


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCc
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT  315 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~  315 (333)
                      ++||+|++...    .+...+++++.++|||||.+++.+.....                ....-..+++...++++||+
T Consensus       191 ~~fD~Vi~~~p----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~----------------~~~~~~~~~i~~~~~~~G~~  250 (278)
T 2frn_A          191 NIADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEK----------------LMPREPFETFKRITKEYGYD  250 (278)
T ss_dssp             SCEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGG----------------GTTTTTHHHHHHHHHHTTCE
T ss_pred             CCccEEEECCc----hhHHHHHHHHHHHCCCCeEEEEEEeeccc----------------cccccHHHHHHHHHHHcCCe
Confidence            79999998543    34567899999999999999998876421                01112457888999999998


Q ss_pred             EEE
Q 019957          316 NYT  318 (333)
Q Consensus       316 ~v~  318 (333)
                      ...
T Consensus       251 ~~~  253 (278)
T 2frn_A          251 VEK  253 (278)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            754

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.64  E-value=2.4e-15  Score=137.97  Aligned_cols=112  Identities=21%  Similarity=0.317  Sum_probs=96.1

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      +.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|+++++.+++  ..++.++.+|+.++++++
T Consensus        54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~gvD~s~-~~~~a~~~~~~~~~--~~~i~~~~~d~~~~~~~~  129 (340)
T 2fyt_A           54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSE-ILYQAMDIIRLNKL--EDTITLIKGKIEEVHLPV  129 (340)
T ss_dssp             HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESST-HHHHHHHHHHHTTC--TTTEEEEESCTTTSCCSC
T ss_pred             HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcC-CCEEEEEChHH-HHHHHHHHHHHcCC--CCcEEEEEeeHHHhcCCC
Confidence            445555555678899999999999999999885 45899999997 99999999888774  478999999999988887


Q ss_pred             CCcceEEecc---ccccCCChHHHHHHHHHhccCCcEEE
Q 019957          236 GFVDAVHAGA---ALHCWPSPSNAVAEISRILRSGGVFV  271 (333)
Q Consensus       236 ~~fD~V~~~~---vl~h~~d~~~~l~~~~r~LkpgG~l~  271 (333)
                      ++||+|++..   .+.|..++..+++++.++|||||+++
T Consensus       130 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          130 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            8999999866   56777778889999999999999998

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.64  E-value=1.1e-15  Score=134.22  Aligned_cols=129  Identities=12%  Similarity=-0.033  Sum_probs=105.2

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC---CCCcceE
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA---SGFVDAV  241 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~---~~~fD~V  241 (333)
                      .++.+|||||||+|..+..++...+..+|+++|+|+.+++.++++....+   ..++.++.+|+++++..   +++||+|
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---l~~v~~~~~d~~~~~~~~~~~~~fD~I  155 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLG---LKGARALWGRAEVLAREAGHREAYARA  155 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT---CSSEEEEECCHHHHTTSTTTTTCEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC---CCceEEEECcHHHhhcccccCCCceEE
Confidence            35779999999999999999998778899999999999999999998877   44699999999887643   4799999


Q ss_pred             EeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                      ++..+    .+...+++.+.++|||||++++......       ..             ...++...+++.||++.++.
T Consensus       156 ~s~a~----~~~~~ll~~~~~~LkpgG~l~~~~g~~~-------~~-------------e~~~~~~~l~~~G~~~~~~~  210 (249)
T 3g89_A          156 VARAV----APLCVLSELLLPFLEVGGAAVAMKGPRV-------EE-------------ELAPLPPALERLGGRLGEVL  210 (249)
T ss_dssp             EEESS----CCHHHHHHHHGGGEEEEEEEEEEECSCC-------HH-------------HHTTHHHHHHHHTEEEEEEE
T ss_pred             EECCc----CCHHHHHHHHHHHcCCCeEEEEEeCCCc-------HH-------------HHHHHHHHHHHcCCeEEEEE
Confidence            99654    5678899999999999999998663211       10             12356778888999887754

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.63  E-value=1.8e-15  Score=133.14  Aligned_cols=111  Identities=14%  Similarity=0.205  Sum_probs=89.5

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      ..+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.+++++...         ++..++.+++.
T Consensus        33 ~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~--~V~gvD~S~~ml~~Ar~~~~~~---------~v~~~~~~~~~  101 (261)
T 3iv6_A           33 DRENDIFLENIVPGSTVAVIGASTRFLIEKALERGA--SVTVFDFSQRMCDDLAEALADR---------CVTIDLLDITA  101 (261)
T ss_dssp             HHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTSSS---------CCEEEECCTTS
T ss_pred             HHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHhc---------cceeeeeeccc
Confidence            345666677777788999999999999999999875  9999999999999999986442         23444444332


Q ss_pred             -----CCCCcceEEeccccccCCC--hHHHHHHHHHhccCCcEEEEEEec
Q 019957          234 -----ASGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       234 -----~~~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                           .+++||+|++..+++|+..  ...+++++.++| |||+++++...
T Consensus       102 ~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          102 EIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             CCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             ccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence                 2568999999999999864  457899999999 99999998754

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.63  E-value=5e-15  Score=131.96  Aligned_cols=120  Identities=17%  Similarity=0.208  Sum_probs=101.4

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhc-C-cCCCCCeEEEEcc
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQD-N-TILTSNLALVRAD  227 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~-~-~~~~~~i~~~~~d  227 (333)
                      .......+...+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.+++++... + +  ..++.++.+|
T Consensus        84 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~--~~~v~~~~~d  161 (280)
T 1i9g_A           84 YPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP--PDNWRLVVSD  161 (280)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC--CTTEEEECSC
T ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC--CCcEEEEECc
Confidence            3445566777777778889999999999999999985 55679999999999999999998765 3 2  3579999999


Q ss_pred             CCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          228 VCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      +.+.++++++||+|++     +.+++..+++++.++|+|||.+++.++..
T Consensus       162 ~~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  206 (280)
T 1i9g_A          162 LADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATV  206 (280)
T ss_dssp             GGGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             hHhcCCCCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            9888777789999998     55688899999999999999999988643

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.63  E-value=7.8e-15  Score=136.12  Aligned_cols=124  Identities=14%  Similarity=0.113  Sum_probs=100.2

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      +...+.+.+.+...++.+|||+|||+|.++..+++.++..+|+|+|+|+.+++.+++++..+++....++.++.+|+.+ 
T Consensus       208 d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-  286 (375)
T 4dcm_A          208 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-  286 (375)
T ss_dssp             CHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-
T ss_pred             cHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-
Confidence            3445667777877777899999999999999999998778999999999999999999988764212368899999987 


Q ss_pred             CCCCCCcceEEeccccccCC---Ch--HHHHHHHHHhccCCcEEEEEEec
Q 019957          232 PFASGFVDAVHAGAALHCWP---SP--SNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~---d~--~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ++++++||+|+++..+++..   +.  ..+++++.++|||||.+++....
T Consensus       287 ~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~  336 (375)
T 4dcm_A          287 GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR  336 (375)
T ss_dssp             TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence            45678999999998887632   22  36899999999999999997643

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.63  E-value=9.9e-16  Score=130.07  Aligned_cols=120  Identities=10%  Similarity=0.071  Sum_probs=94.5

Q ss_pred             HHHHHHHhhcc-cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCC-CCeEEEEccCCCC
Q 019957          154 EFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT-SNLALVRADVCRL  231 (333)
Q Consensus       154 ~~~~~~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~-~~i~~~~~d~~~l  231 (333)
                      ..+.+.+.+.. .++.+|||+|||+|.++..++..+ ..+|+|+|+|+.+++.|++++...++  . .++.++.+|+.++
T Consensus        40 ~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~v~~~~~d~~~~  116 (201)
T 2ift_A           40 VKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKC--SSEQAEVINQSSLDF  116 (201)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTC--CTTTEEEECSCHHHH
T ss_pred             HHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCC--CccceEEEECCHHHH
Confidence            33444444443 257799999999999999877765 35899999999999999999988763  2 6899999998764


Q ss_pred             CC--CCCC-cceEEeccccccCCChHHHHHHH--HHhccCCcEEEEEEecc
Q 019957          232 PF--ASGF-VDAVHAGAALHCWPSPSNAVAEI--SRILRSGGVFVGTTFLR  277 (333)
Q Consensus       232 p~--~~~~-fD~V~~~~vl~h~~d~~~~l~~~--~r~LkpgG~l~i~~~~~  277 (333)
                      ..  .+++ ||+|++...+ |..+...+++.+  .++|||||.+++.+...
T Consensus       117 ~~~~~~~~~fD~I~~~~~~-~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          117 LKQPQNQPHFDVVFLDPPF-HFNLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             TTSCCSSCCEEEEEECCCS-SSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             HHhhccCCCCCEEEECCCC-CCccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            32  3578 9999998774 356677889999  67899999999988654

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.63  E-value=7.1e-15  Score=126.92  Aligned_cols=147  Identities=16%  Similarity=0.185  Sum_probs=106.1

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---CCCCCcc
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVD  239 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD  239 (333)
                      ..++.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.++++.+.     ..++.++.+|+.+..   ...++||
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~D  145 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-----RRNIVPILGDATKPEEYRALVPKVD  145 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-----CTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc-----cCCCEEEEccCCCcchhhcccCCce
Confidence            456789999999999999999987 4556999999999999999887765     358999999997732   1245899


Q ss_pred             eEEeccccccCCChH-HHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEE
Q 019957          240 AVHAGAALHCWPSPS-NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT  318 (333)
Q Consensus       240 ~V~~~~vl~h~~d~~-~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~  318 (333)
                      +|++...   .++.. .+++++.++|||||.+++..........+.            ...+..+++..+ +++ |++++
T Consensus       146 ~v~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------------~~~~~~~~l~~l-~~~-f~~~~  208 (227)
T 1g8a_A          146 VIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKE------------PEQVFREVEREL-SEY-FEVIE  208 (227)
T ss_dssp             EEEECCC---STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSC------------HHHHHHHHHHHH-HTT-SEEEE
T ss_pred             EEEECCC---CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCC------------hhhhhHHHHHHH-Hhh-ceeee
Confidence            9997654   23333 449999999999999999843221111100            012345678777 777 99988


Q ss_pred             EEEeCe----EEEEEEeC
Q 019957          319 SKVQQS----FIMFAAQK  332 (333)
Q Consensus       319 ~~~~~~----~~~~~a~k  332 (333)
                      ......    ..+++++|
T Consensus       209 ~~~~~~~~~~~~~~~~~~  226 (227)
T 1g8a_A          209 RLNLEPYEKDHALFVVRK  226 (227)
T ss_dssp             EEECTTTSSSEEEEEEEC
T ss_pred             EeccCcccCCCEEEEEEe
Confidence            665333    36666665

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.63  E-value=1.1e-15  Score=140.90  Aligned_cols=125  Identities=13%  Similarity=0.104  Sum_probs=100.5

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH-------HhcCcCCCCCeEEE
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI-------KQDNTILTSNLALV  224 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-------~~~~~~~~~~i~~~  224 (333)
                      ...+..+.+.+...++.+|||||||+|.++..++...+..+++|+|+++.+++.|+++.       ...|+. ..++.++
T Consensus       159 ~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~-~~rVefi  237 (438)
T 3uwp_A          159 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK-HAEYTLE  237 (438)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC-CCEEEEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC-CCCeEEE
Confidence            34456667777778889999999999999999987754456999999999999998754       233320 2589999


Q ss_pred             EccCCCCCCCC--CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957          225 RADVCRLPFAS--GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       225 ~~d~~~lp~~~--~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      ++|+.++++.+  ..||+|+++.++ +.++....|.++.++|||||+|++.+....
T Consensus       238 ~GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p  292 (438)
T 3uwp_A          238 RGDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKPFAP  292 (438)
T ss_dssp             ECCTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred             ECcccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeecccC
Confidence            99999988754  479999998776 457788899999999999999999876654

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.62  E-value=6.9e-15  Score=131.40  Aligned_cols=150  Identities=15%  Similarity=0.058  Sum_probs=106.3

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeC-CHHHHHHHHHHH-----HhcCcC--CCCCeEEE
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF-SENMLRQCYDFI-----KQDNTI--LTSNLALV  224 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~-s~~~~~~a~~~~-----~~~~~~--~~~~i~~~  224 (333)
                      ...+.+.......++.+|||+|||+|.++..+++.+ ..+|+|+|+ ++.+++.++++.     ...++.  ...++.+.
T Consensus        66 ~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~  144 (281)
T 3bzb_A           66 ALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVV  144 (281)
T ss_dssp             HHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEE
T ss_pred             HHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEE
Confidence            344555555544567899999999999999988875 458999999 899999999988     443320  00367888


Q ss_pred             EccCCCCC--C----CCCCcceEEeccccccCCChHHHHHHHHHhcc---C--CcEEEEEEecccCCCcchhhHHHHHhh
Q 019957          225 RADVCRLP--F----ASGFVDAVHAGAALHCWPSPSNAVAEISRILR---S--GGVFVGTTFLRYTSSTSLTGRVLRERI  293 (333)
Q Consensus       225 ~~d~~~lp--~----~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lk---p--gG~l~i~~~~~~~~~~~~~~~~~~~~~  293 (333)
                      ..+..+..  +    .+++||+|++..+++|.++...+++.+.++||   |  ||++++......    +.    .    
T Consensus       145 ~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~----~~----~----  212 (281)
T 3bzb_A          145 PYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHR----PH----L----  212 (281)
T ss_dssp             ECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC-----------------
T ss_pred             EecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeee----cc----c----
Confidence            76654421  1    35789999999999999999999999999999   9  999877542211    00    0    


Q ss_pred             hccCCCCCHHHHHHHHHhCC-CcEEEEE
Q 019957          294 LQNYNYLTEEEIEDLCTSCG-LTNYTSK  320 (333)
Q Consensus       294 ~~~~~~~t~~~l~~ll~~aG-f~~v~~~  320 (333)
                           .....++...+++.| |++.+..
T Consensus       213 -----~~~~~~~~~~l~~~G~f~v~~~~  235 (281)
T 3bzb_A          213 -----AERDLAFFRLVNADGALIAEPWL  235 (281)
T ss_dssp             --------CTHHHHHHHHSTTEEEEEEE
T ss_pred             -----chhHHHHHHHHHhcCCEEEEEec
Confidence                 011246667888899 8887753

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.62  E-value=3.5e-15  Score=137.42  Aligned_cols=109  Identities=15%  Similarity=0.227  Sum_probs=93.5

Q ss_pred             cccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEE
Q 019957          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (333)
                      ...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|+++...+++  ..++.++.+|+.++++++++||+|+
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~g-~~~v~gvD~s~-~l~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~fD~Ii  138 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKAG-ARKVIGIECSS-ISDYAVKIVKANKL--DHVVTIIKGKVEEVELPVEKVDIII  138 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHTT-CSEEEEEECST-HHHHHHHHHHHTTC--TTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHCC-CCEEEEECcHH-HHHHHHHHHHHcCC--CCcEEEEECcHHHccCCCCceEEEE
Confidence            34567899999999999999999984 56999999995 99999999988775  5569999999999988889999999


Q ss_pred             eccc---cccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          243 AGAA---LHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       243 ~~~v---l~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      +..+   +.+..++..+++++.++|||||+++....
T Consensus       139 s~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  174 (349)
T 3q7e_A          139 SEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRA  174 (349)
T ss_dssp             ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEE
T ss_pred             EccccccccCchhHHHHHHHHHHhCCCCCEEccccc
Confidence            8654   45557889999999999999999975443

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.62  E-value=2e-15  Score=131.31  Aligned_cols=109  Identities=19%  Similarity=0.258  Sum_probs=87.2

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh------cCcCCCCCeEEEEccCCC-CC--CCC
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ------DNTILTSNLALVRADVCR-LP--FAS  235 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~------~~~~~~~~i~~~~~d~~~-lp--~~~  235 (333)
                      .++.+|||||||+|.++..+++..+...++|+|+|+.+++.|++++..      .+   ..++.++++|+.. ++  +++
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~---~~nv~~~~~d~~~~l~~~~~~  121 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGG---FQNIACLRSNAMKHLPNFFYK  121 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCC---CTTEEEEECCTTTCHHHHCCT
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcC---CCeEEEEECcHHHhhhhhCCC
Confidence            345689999999999999999998888999999999999999987653      22   4689999999987 66  678


Q ss_pred             CCcceEEeccccccCCC--------hHHHHHHHHHhccCCcEEEEEEec
Q 019957          236 GFVDAVHAGAALHCWPS--------PSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d--------~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ++||.|++...-.+...        ...+++++.++|||||.|++.+..
T Consensus       122 ~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~  170 (235)
T 3ckk_A          122 GQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV  170 (235)
T ss_dssp             TCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             cCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence            89999987543322111        136899999999999999998754

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.62  E-value=4.2e-15  Score=135.12  Aligned_cols=116  Identities=14%  Similarity=0.147  Sum_probs=98.4

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      .....+.+.+...++.+|||||||+|.++..+++.++ ..+|+|+|+|+.+++.+++++...+   ..++.++.+|+.+.
T Consensus        62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g---~~~v~~~~~d~~~~  138 (317)
T 1dl5_A           62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG---IENVIFVCGDGYYG  138 (317)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGC
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCCeEEEECChhhc
Confidence            3456667777777889999999999999999998866 3569999999999999999998876   45699999999886


Q ss_pred             CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      +..+++||+|++..+++|+.      +++.++|||||++++.....
T Consensus       139 ~~~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~~~  178 (317)
T 1dl5_A          139 VPEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPINLK  178 (317)
T ss_dssp             CGGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBCBG
T ss_pred             cccCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEECCC
Confidence            55567899999999999987      57889999999999976543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.62  E-value=5.6e-15  Score=126.37  Aligned_cols=116  Identities=16%  Similarity=0.096  Sum_probs=96.2

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      .....+.+.+...++.+|||||||+|.++..+++.+ +..+++++|+++.+++.+++++...+   ..++.++.+|+...
T Consensus        64 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~  140 (215)
T 2yxe_A           64 HMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG---YDNVIVIVGDGTLG  140 (215)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT---CTTEEEEESCGGGC
T ss_pred             HHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEECCcccC
Confidence            344566666777778899999999999999999885 44699999999999999999988766   45799999998543


Q ss_pred             CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      ...+++||+|++..+++|++      +++.++|||||++++.....
T Consensus       141 ~~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          141 YEPLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             CGGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESSS
T ss_pred             CCCCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEECCC
Confidence            32367899999999999986      47899999999999988654

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.62  E-value=7.3e-17  Score=140.72  Aligned_cols=150  Identities=14%  Similarity=0.119  Sum_probs=114.0

Q ss_pred             HHHHHHhhc-ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          155 FKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       155 ~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      .+.+...+. ..++.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.+++++...++  ..++.++++|+.+++ 
T Consensus        66 ~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~-  140 (241)
T 3gdh_A           66 AEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGI--ADKIEFICGDFLLLA-  140 (241)
T ss_dssp             HHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHHHHG-
T ss_pred             HHHHHHHhhhccCCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCC--CcCeEEEECChHHhc-
Confidence            344444333 2367899999999999999999986  4999999999999999999988763  358999999998876 


Q ss_pred             CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCC
Q 019957          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCG  313 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aG  313 (333)
                      .+++||+|++..+++|..++...+.++.++|+|||.+++...........          .......+.+++..++...|
T Consensus       141 ~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~~~~~~~~~~----------~~lp~~~~~~~~~~~l~~~g  210 (241)
T 3gdh_A          141 SFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRLSKKITNNIV----------YFLPRNADIDQVASLAGPGG  210 (241)
T ss_dssp             GGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHHHHHHHCSCEE----------EEEETTBCHHHHHHTTCTTC
T ss_pred             ccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHHHHHhhCCceE----------EECCCCCCHHHHHHHhccCC
Confidence            56799999999999998888778889999999999966643221110000          01123456788888888888


Q ss_pred             CcEEEE
Q 019957          314 LTNYTS  319 (333)
Q Consensus       314 f~~v~~  319 (333)
                      ...+..
T Consensus       211 ~~~i~~  216 (241)
T 3gdh_A          211 QVEIEQ  216 (241)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            766553

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.61  E-value=3.4e-15  Score=126.83  Aligned_cols=122  Identities=10%  Similarity=0.084  Sum_probs=96.7

Q ss_pred             cHHHHHHHHHhhccc-CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC
Q 019957          151 PDEEFKMAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (333)
                      .+...+.+.+.+... ++.+|||+|||+|.++..++..+ ..+|+|+|+|+.+++.+++++...+   ..++.++++|+.
T Consensus        38 ~~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~---~~~v~~~~~D~~  113 (202)
T 2fpo_A           38 TDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLK---AGNARVVNSNAM  113 (202)
T ss_dssp             CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTT---CCSEEEECSCHH
T ss_pred             HHHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHH
Confidence            334445555555442 57899999999999999877775 3489999999999999999998876   368999999987


Q ss_pred             C-CCCCCCCcceEEeccccccCCChHHHHHHHHH--hccCCcEEEEEEecc
Q 019957          230 R-LPFASGFVDAVHAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFLR  277 (333)
Q Consensus       230 ~-lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r--~LkpgG~l~i~~~~~  277 (333)
                      + ++..+++||+|++...+ |..+...+++.+.+  +|+|||++++.....
T Consensus       114 ~~~~~~~~~fD~V~~~~p~-~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          114 SFLAQKGTPHNIVFVDPPF-RRGLLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             HHHSSCCCCEEEEEECCSS-STTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             HHHhhcCCCCCEEEECCCC-CCCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            6 45556789999998763 45677788888876  599999999987654

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.61  E-value=6.8e-15  Score=127.43  Aligned_cols=136  Identities=7%  Similarity=0.042  Sum_probs=108.8

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (333)
Q Consensus       155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (333)
                      ++.+.+++.  ++.+|||||||+|.++..+++.++..+|+++|+++.+++.|++++..+|+  ..++.+..+|..+...+
T Consensus        12 L~~i~~~v~--~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl--~~~I~v~~gD~l~~~~~   87 (244)
T 3gnl_A           12 LEKVASYIT--KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL--TEQIDVRKGNGLAVIEK   87 (244)
T ss_dssp             HHHHHTTCC--SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC--TTTEEEEECSGGGGCCG
T ss_pred             HHHHHHhCC--CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CceEEEEecchhhccCc
Confidence            355666654  36799999999999999999998777899999999999999999999885  56799999999775544


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      +.+||+|+..++.-.  -...+|.+..+.|+++|.|++....                        ..+.++++|.+.||
T Consensus        88 ~~~~D~IviagmGg~--lI~~IL~~~~~~L~~~~~lIlq~~~------------------------~~~~lr~~L~~~Gf  141 (244)
T 3gnl_A           88 KDAIDTIVIAGMGGT--LIRTILEEGAAKLAGVTKLILQPNI------------------------AAWQLREWSEQNNW  141 (244)
T ss_dssp             GGCCCEEEEEEECHH--HHHHHHHHTGGGGTTCCEEEEEESS------------------------CHHHHHHHHHHHTE
T ss_pred             cccccEEEEeCCchH--HHHHHHHHHHHHhCCCCEEEEEcCC------------------------ChHHHHHHHHHCCC
Confidence            446999987554331  1346788889999999999987621                        35789999999999


Q ss_pred             cEEEEE
Q 019957          315 TNYTSK  320 (333)
Q Consensus       315 ~~v~~~  320 (333)
                      .++++.
T Consensus       142 ~i~~E~  147 (244)
T 3gnl_A          142 LITSEA  147 (244)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            987653

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.61  E-value=3.7e-15  Score=134.61  Aligned_cols=137  Identities=13%  Similarity=0.141  Sum_probs=102.7

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh--cCcCCCCCeEEEEccCCCCCC--CCCCcce
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ--DNTILTSNLALVRADVCRLPF--ASGFVDA  240 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~~~~~~~i~~~~~d~~~lp~--~~~~fD~  240 (333)
                      .++.+|||||||+|.++..+++..+..+++++|+++.+++.+++++..  .+. ..+++.++.+|+..++.  .+++||+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~-~~~~v~~~~~D~~~~~~~~~~~~fDv  172 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSL-ADPRATVRVGDGLAFVRQTPDNTYDV  172 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG-GCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhccc-CCCcEEEEECcHHHHHHhccCCceeE
Confidence            346799999999999999999876567999999999999999998742  111 14689999999977543  3679999


Q ss_pred             EEeccccccCCCh----HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcE
Q 019957          241 VHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN  316 (333)
Q Consensus       241 V~~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~  316 (333)
                      |++....++.+..    ..+++++.++|||||++++...+..      ..            ....+++.+.++++||..
T Consensus       173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~------~~------------~~~~~~~~~~l~~~GF~~  234 (304)
T 3bwc_A          173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIW------LD------------LELIEKMSRFIRETGFAS  234 (304)
T ss_dssp             EEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTT------TC------------HHHHHHHHHHHHHHTCSE
T ss_pred             EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcc------cc------------hHHHHHHHHHHHhCCCCc
Confidence            9997665554333    5889999999999999999864321      00            113467889999999998


Q ss_pred             EEEE
Q 019957          317 YTSK  320 (333)
Q Consensus       317 v~~~  320 (333)
                      ++..
T Consensus       235 v~~~  238 (304)
T 3bwc_A          235 VQYA  238 (304)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8764

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.61  E-value=3.9e-15  Score=136.38  Aligned_cols=122  Identities=17%  Similarity=0.199  Sum_probs=93.9

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcC-------cC-CCCCe
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDN-------TI-LTSNL  221 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~-------~~-~~~~i  221 (333)
                      .......+...+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.|++++...+       +. ...++
T Consensus        90 ~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v  169 (336)
T 2b25_A           90 FPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNV  169 (336)
T ss_dssp             CHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCE
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCce
Confidence            3344566667777778889999999999999999987 666799999999999999999887521       10 02579


Q ss_pred             EEEEccCCCC--CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          222 ALVRADVCRL--PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       222 ~~~~~d~~~l--p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      .++.+|+.+.  ++++++||+|++.     .+++..+++++.++|||||.+++..+..
T Consensus       170 ~~~~~d~~~~~~~~~~~~fD~V~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~  222 (336)
T 2b25_A          170 DFIHKDISGATEDIKSLTFDAVALD-----MLNPHVTLPVFYPHLKHGGVCAVYVVNI  222 (336)
T ss_dssp             EEEESCTTCCC-------EEEEEEC-----SSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred             EEEECChHHcccccCCCCeeEEEEC-----CCCHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            9999999876  4566789999984     3456668999999999999999888654

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.61  E-value=9.4e-15  Score=135.74  Aligned_cols=106  Identities=18%  Similarity=0.225  Sum_probs=93.2

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++.+|||+|||+|.++..+++.+.  +|+++|+|+.+++.+++++..+++    .+.++.+|+.+.+..+++||+|+++
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~g~--~V~gvDis~~al~~A~~n~~~~~~----~v~~~~~D~~~~~~~~~~fD~Ii~n  305 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARMGA--EVVGVEDDLASVLSLQKGLEANAL----KAQALHSDVDEALTEEARFDIIVTN  305 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHTTC--EEEEEESBHHHHHHHHHHHHHTTC----CCEEEECSTTTTSCTTCCEEEEEEC
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCC----CeEEEEcchhhccccCCCeEEEEEC
Confidence            3577999999999999999999864  999999999999999999888653    4899999999887667899999999


Q ss_pred             ccccc-----CCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          245 AALHC-----WPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       245 ~vl~h-----~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ..++|     ..+...+++++.++|||||.+++....
T Consensus       306 pp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~  342 (381)
T 3dmg_A          306 PPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP  342 (381)
T ss_dssp             CCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred             CchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence            99888     445678999999999999999998743

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.61  E-value=8.6e-15  Score=125.99  Aligned_cols=122  Identities=9%  Similarity=0.168  Sum_probs=97.9

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      ....+.+...+...++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|++++...++  ..++.++.+|+.+
T Consensus        44 ~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~  121 (221)
T 3u81_A           44 DAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL--QDKVTILNGASQD  121 (221)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESCHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC--CCceEEEECCHHH
Confidence            3444555555555667899999999999999999864 366999999999999999999988774  4579999999854


Q ss_pred             -CCCC-----CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          231 -LPFA-----SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       231 -lp~~-----~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                       ++..     .++||+|++....++..+...++..+ ++|||||++++.+..
T Consensus       122 ~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~  172 (221)
T 3u81_A          122 LIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVI  172 (221)
T ss_dssp             HGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred             HHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence             3321     26899999998888877666778888 999999999986644

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.61  E-value=1.5e-14  Score=124.08  Aligned_cols=140  Identities=11%  Similarity=0.120  Sum_probs=110.1

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC-CCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-RLPFA  234 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~-~lp~~  234 (333)
                      +.+.+++.  ++.+|||||||+|.++..+++.++..+|+++|+++.+++.|++++..+++  ..++.++.+|.. .++. 
T Consensus         7 ~~l~~~v~--~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl--~~~i~~~~~d~l~~l~~-   81 (225)
T 3kr9_A            7 ELVASFVS--QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL--KEKIQVRLANGLAAFEE-   81 (225)
T ss_dssp             HHHHTTSC--TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC--TTTEEEEECSGGGGCCG-
T ss_pred             HHHHHhCC--CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CceEEEEECchhhhccc-
Confidence            45555554  46799999999999999999998777899999999999999999999885  567999999984 4442 


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      ...||+|+..++-..+  ...+|.+....|+++|+|++....                        ..+.++++|.++||
T Consensus        82 ~~~~D~IviaG~Gg~~--i~~Il~~~~~~L~~~~~lVlq~~~------------------------~~~~vr~~L~~~Gf  135 (225)
T 3kr9_A           82 TDQVSVITIAGMGGRL--IARILEEGLGKLANVERLILQPNN------------------------REDDLRIWLQDHGF  135 (225)
T ss_dssp             GGCCCEEEEEEECHHH--HHHHHHHTGGGCTTCCEEEEEESS------------------------CHHHHHHHHHHTTE
T ss_pred             CcCCCEEEEcCCChHH--HHHHHHHHHHHhCCCCEEEEECCC------------------------CHHHHHHHHHHCCC
Confidence            2269999876543211  357788999999999999885521                        35789999999999


Q ss_pred             cEEEEE---EeCeEE
Q 019957          315 TNYTSK---VQQSFI  326 (333)
Q Consensus       315 ~~v~~~---~~~~~~  326 (333)
                      .++++.   ..+.|+
T Consensus       136 ~i~~e~lv~e~~~~Y  150 (225)
T 3kr9_A          136 QIVAESILEEAGKFY  150 (225)
T ss_dssp             EEEEEEEEEETTEEE
T ss_pred             EEEEEEEEEECCEEE
Confidence            998864   355553

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.61  E-value=1e-14  Score=126.21  Aligned_cols=112  Identities=15%  Similarity=0.140  Sum_probs=94.6

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (333)
                      .....+.+.+...++.+|||||||+|.++..+++.+  .+++|+|+++.+++.++++....     .++.++.+|+....
T Consensus        57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~  129 (231)
T 1vbf_A           57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYY-----NNIKLILGDGTLGY  129 (231)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTC-----SSEEEEESCGGGCC
T ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhc-----CCeEEEECCccccc
Confidence            445666777777778899999999999999999987  49999999999999999987653     27999999997733


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      ..+++||+|++..+++|+.      .++.++|||||++++.++..
T Consensus       130 ~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          130 EEEKPYDRVVVWATAPTLL------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             GGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred             ccCCCccEEEECCcHHHHH------HHHHHHcCCCcEEEEEEcCC
Confidence            3467899999999999986      36889999999999988654

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.60  E-value=3.8e-15  Score=124.35  Aligned_cols=126  Identities=15%  Similarity=0.150  Sum_probs=98.9

Q ss_pred             CCcHHHHHHHHHhhcc-cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc
Q 019957          149 PGPDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (333)
                      +..+...+.+.+.+.. .++.+|||+|||+|.++..+++.+ ..+|+|+|+++.+++.+++++...++  ..++.++.+|
T Consensus        26 p~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d  102 (187)
T 2fhp_A           26 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAITKE--PEKFEVRKMD  102 (187)
T ss_dssp             CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESC
T ss_pred             cCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCC--CcceEEEECc
Confidence            3344555666666643 467899999999999999888764 45999999999999999999887763  3579999999


Q ss_pred             CCCCC----CCCCCcceEEeccccccCCChHHHHHHH--HHhccCCcEEEEEEeccc
Q 019957          228 VCRLP----FASGFVDAVHAGAALHCWPSPSNAVAEI--SRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       228 ~~~lp----~~~~~fD~V~~~~vl~h~~d~~~~l~~~--~r~LkpgG~l~i~~~~~~  278 (333)
                      +.+..    +.+++||+|++...++ ..+....++.+  .++|||||.+++..+...
T Consensus       103 ~~~~~~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          103 ANRALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             HHHHHHHHHhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence            87632    2267899999987744 45667778888  889999999999887653

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.60  E-value=2.2e-14  Score=126.62  Aligned_cols=117  Identities=14%  Similarity=0.102  Sum_probs=94.0

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh---cCcCCCCCeEEEEccCCCC--
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ---DNTILTSNLALVRADVCRL--  231 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~---~~~~~~~~i~~~~~d~~~l--  231 (333)
                      .+..++...++.+|||+|||+|.++..++..++..+++|+|+++.+++.|++++..   +++  ..++.++.+|+.+.  
T Consensus        27 lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l--~~~v~~~~~D~~~~~~  104 (260)
T 2ozv_A           27 LLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAF--SARIEVLEADVTLRAK  104 (260)
T ss_dssp             HHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTT--GGGEEEEECCTTCCHH
T ss_pred             HHHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCC--cceEEEEeCCHHHHhh
Confidence            34455555567799999999999999999998777999999999999999999877   653  44699999999886  


Q ss_pred             -----CCCCCCcceEEecccccc------------------CCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          232 -----PFASGFVDAVHAGAALHC------------------WPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       232 -----p~~~~~fD~V~~~~vl~h------------------~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                           ++.+++||+|+++-.+..                  ..+...+++.+.++|||||.+++..+
T Consensus       105 ~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  171 (260)
T 2ozv_A          105 ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR  171 (260)
T ss_dssp             HHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence                 255789999999732221                  12357889999999999999998653

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.60  E-value=1.5e-15  Score=125.95  Aligned_cols=121  Identities=16%  Similarity=0.157  Sum_probs=94.8

Q ss_pred             HHHHHHHhhc-ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-C
Q 019957          154 EFKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-L  231 (333)
Q Consensus       154 ~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-l  231 (333)
                      ..+.+.+.+. ..++.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.+++++...++  ..++.++.+|+.+ +
T Consensus        18 ~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~   94 (177)
T 2esr_A           18 VRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG-MSAAVLVEKNRKAQAIIQDNIIMTKA--ENRFTLLKMEAERAI   94 (177)
T ss_dssp             CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHHTTTC--GGGEEEECSCHHHHH
T ss_pred             HHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECcHHHhH
Confidence            3455555555 4567899999999999999998874 45999999999999999999988764  3579999999876 3


Q ss_pred             CCCCCCcceEEeccccccCCChHHHHHHHH--HhccCCcEEEEEEeccc
Q 019957          232 PFASGFVDAVHAGAALHCWPSPSNAVAEIS--RILRSGGVFVGTTFLRY  278 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~--r~LkpgG~l~i~~~~~~  278 (333)
                      +..+++||+|++...+++ .+....++.+.  ++|||||++++.+....
T Consensus        95 ~~~~~~fD~i~~~~~~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A           95 DCLTGRFDLVFLDPPYAK-ETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             HHBCSCEEEEEECCSSHH-HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             HhhcCCCCEEEECCCCCc-chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            433567999999866532 34456677776  99999999999887653

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.60  E-value=6.4e-15  Score=135.35  Aligned_cols=119  Identities=18%  Similarity=0.243  Sum_probs=99.5

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      +...+.+.+.+...++.+|||+|||+|.++..+++.++..+++++|+|+.+++.+++++...++    .+.++.+|+...
T Consensus       182 d~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~----~~~~~~~d~~~~  257 (343)
T 2pjd_A          182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV----EGEVFASNVFSE  257 (343)
T ss_dssp             CHHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC----CCEEEECSTTTT
T ss_pred             cHHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCEEEEcccccc
Confidence            3445667777755567799999999999999999998777999999999999999999887653    467788898765


Q ss_pred             CCCCCCcceEEecccccc-----CCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          232 PFASGFVDAVHAGAALHC-----WPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~h-----~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      +  +++||+|+++.++|+     ..+...+++++.++|||||.+++....
T Consensus       258 ~--~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  305 (343)
T 2pjd_A          258 V--KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (343)
T ss_dssp             C--CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred             c--cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence            4  679999999998875     345678999999999999999998754

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.60  E-value=6.3e-15  Score=127.91  Aligned_cols=120  Identities=11%  Similarity=0.181  Sum_probs=98.3

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ....+.+...+...++.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++++..++  ..++.++.+|+.+.
T Consensus        57 ~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~  134 (232)
T 3ntv_A           57 RLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHF--ENQVRIIEGNALEQ  134 (232)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC--TTTEEEEESCGGGC
T ss_pred             HHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECCHHHH
Confidence            3444566666666678899999999999999999976677999999999999999999988774  45899999999764


Q ss_pred             -C-CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          232 -P-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       232 -p-~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                       + ..+++||+|++...   ..+...+++++.++|||||+|++....
T Consensus       135 ~~~~~~~~fD~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~d~~~  178 (232)
T 3ntv_A          135 FENVNDKVYDMIFIDAA---KAQSKKFFEIYTPLLKHQGLVITDNVL  178 (232)
T ss_dssp             HHHHTTSCEEEEEEETT---SSSHHHHHHHHGGGEEEEEEEEEECTT
T ss_pred             HHhhccCCccEEEEcCc---HHHHHHHHHHHHHhcCCCeEEEEeeCC
Confidence             3 33679999997654   445678899999999999999885543

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.60  E-value=7.6e-15  Score=133.21  Aligned_cols=122  Identities=16%  Similarity=0.161  Sum_probs=96.6

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      .....+...+...++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.++++++..+   ..++.++.+|+..+
T Consensus       105 ~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g---~~~v~~~~~D~~~~  181 (315)
T 1ixk_A          105 ASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG---VLNVILFHSSSLHI  181 (315)
T ss_dssp             HHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT---CCSEEEESSCGGGG
T ss_pred             HHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC---CCeEEEEECChhhc
Confidence            3334555667777888999999999999999998743 4689999999999999999998877   45799999999887


Q ss_pred             CCCCCCcceEEec------cccccCCCh----------------HHHHHHHHHhccCCcEEEEEEecc
Q 019957          232 PFASGFVDAVHAG------AALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       232 p~~~~~fD~V~~~------~vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      +..+++||+|++.      +++.+.++.                ..+|+++.++|||||++++.+...
T Consensus       182 ~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~  249 (315)
T 1ixk_A          182 GELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  249 (315)
T ss_dssp             GGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             ccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            6556789999983      344443321                478999999999999999988543

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.60  E-value=1.3e-14  Score=132.38  Aligned_cols=113  Identities=18%  Similarity=0.273  Sum_probs=94.1

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCC
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (333)
                      .+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|++ .+++.|++++..+++  ..++.++.+|+.+++++++
T Consensus        29 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~~vD~s-~~~~~a~~~~~~~~~--~~~i~~~~~d~~~~~~~~~  104 (328)
T 1g6q_1           29 AIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMS-SIIEMAKELVELNGF--SDKITLLRGKLEDVHLPFP  104 (328)
T ss_dssp             HHHHHHHHHTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESS-THHHHHHHHHHHTTC--TTTEEEEESCTTTSCCSSS
T ss_pred             HHHhhHhhcCCCEEEEecCccHHHHHHHHHCC-CCEEEEEChH-HHHHHHHHHHHHcCC--CCCEEEEECchhhccCCCC
Confidence            34334444567899999999999999999875 4589999999 599999999888775  5679999999999887778


Q ss_pred             CcceEEecc---ccccCCChHHHHHHHHHhccCCcEEEEE
Q 019957          237 FVDAVHAGA---ALHCWPSPSNAVAEISRILRSGGVFVGT  273 (333)
Q Consensus       237 ~fD~V~~~~---vl~h~~d~~~~l~~~~r~LkpgG~l~i~  273 (333)
                      +||+|++..   .+.+..++..++.++.++|||||.++..
T Consensus       105 ~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~  144 (328)
T 1g6q_1          105 KVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD  144 (328)
T ss_dssp             CEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             cccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence            999999874   4556677889999999999999999843

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.59  E-value=1.9e-14  Score=118.50  Aligned_cols=100  Identities=21%  Similarity=0.251  Sum_probs=86.0

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--------CC
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FA  234 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~  234 (333)
                      ..++.+|||+|||+|.++..+++. ++..+++|+|+++ +++             ..++.++.+|+.+.+        ++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~-------------~~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP-------------IVGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC-------------CTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc-------------cCcEEEEEcccccchhhhhhhccCC
Confidence            456789999999999999999988 5557999999999 642             347899999998876        66


Q ss_pred             CCCcceEEeccccccCCCh-----------HHHHHHHHHhccCCcEEEEEEecc
Q 019957          235 SGFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~-----------~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      +++||+|++..++++..++           ..+++++.++|+|||.+++.++..
T Consensus        86 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  139 (180)
T 1ej0_A           86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             CCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            7899999999999888776           688999999999999999988654

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.59  E-value=2.1e-15  Score=123.93  Aligned_cols=120  Identities=16%  Similarity=0.190  Sum_probs=94.6

Q ss_pred             cHHHHHHHHHhhccc--CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC
Q 019957          151 PDEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (333)
                      .....+.+.+.+...  ++.+|||+|||+|.++..+++.++  .++|+|+|+.+++.+++++...+   . ++.++.+|+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~---~-~~~~~~~d~   97 (171)
T 1ws6_A           24 PVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRTG---L-GARVVALPV   97 (171)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHHT---C-CCEEECSCH
T ss_pred             HHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHcC---C-ceEEEeccH
Confidence            344445555555432  577999999999999999999886  69999999999999999988765   3 789999998


Q ss_pred             CCC-C-CC--CCCcceEEeccccccCCChHHHHHHHH--HhccCCcEEEEEEeccc
Q 019957          229 CRL-P-FA--SGFVDAVHAGAALHCWPSPSNAVAEIS--RILRSGGVFVGTTFLRY  278 (333)
Q Consensus       229 ~~l-p-~~--~~~fD~V~~~~vl~h~~d~~~~l~~~~--r~LkpgG~l~i~~~~~~  278 (333)
                      .+. + ..  .++||+|++..+++  .+....++.+.  ++|||||.+++.++...
T Consensus        98 ~~~~~~~~~~~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~  151 (171)
T 1ws6_A           98 EVFLPEAKAQGERFTVAFMAPPYA--MDLAALFGELLASGLVEAGGLYVLQHPKDL  151 (171)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred             HHHHHhhhccCCceEEEEECCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence            763 2 11  34899999987765  55666777777  99999999999887654

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.58  E-value=6.2e-15  Score=129.54  Aligned_cols=147  Identities=12%  Similarity=0.059  Sum_probs=99.0

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC---CCC---CCCcc
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PFA---SGFVD  239 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l---p~~---~~~fD  239 (333)
                      ++.+|||+|||+|.++..++...+..+++|+|+|+.+++.|++++...++  ..++.++.+|+.+.   ++.   +++||
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL--SDLIKVVKVPQKTLLMDALKEESEIIYD  142 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCC--CccEEEEEcchhhhhhhhhhcccCCccc
Confidence            46799999999999999888875456999999999999999999988764  44699999997652   344   26899


Q ss_pred             eEEeccccccCC--------------Ch-HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH-h--hhccCCCCC
Q 019957          240 AVHAGAALHCWP--------------SP-SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-R--ILQNYNYLT  301 (333)
Q Consensus       240 ~V~~~~vl~h~~--------------d~-~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~t  301 (333)
                      +|+++-.+++..              .+ ..++.++.++|||||.+.+......     ........ .  ........+
T Consensus       143 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~-----~~~~~l~~~g~~~~~~~~~~~  217 (254)
T 2h00_A          143 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIH-----DSLQLKKRLRWYSCMLGKKCS  217 (254)
T ss_dssp             EEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHH-----HHHHHGGGBSCEEEEESSTTS
T ss_pred             EEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHH-----HHHhcccceEEEEECCCChhH
Confidence            999985554432              11 2456788999999998876542110     00000000 0  001222334


Q ss_pred             HHHHHHHHHhCCCcEEEE
Q 019957          302 EEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       302 ~~~l~~ll~~aGf~~v~~  319 (333)
                      .+++.++++++||+.++.
T Consensus       218 ~~~~~~~l~~~Gf~~v~~  235 (254)
T 2h00_A          218 LAPLKEELRIQGVPKVTY  235 (254)
T ss_dssp             HHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHcCCCceEE
Confidence            488999999999998764

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.58  E-value=9.2e-15  Score=135.90  Aligned_cols=116  Identities=17%  Similarity=0.210  Sum_probs=95.8

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      +.+.......++.+|||||||+|.++..+++.+ ..+|+|+|+| .+++.|+++++.+++  ..++.++.+|+.+++++ 
T Consensus        53 ~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~-  127 (376)
T 3r0q_C           53 NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMADHARALVKANNL--DHIVEVIEGSVEDISLP-  127 (376)
T ss_dssp             HHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESS-TTHHHHHHHHHHTTC--TTTEEEEESCGGGCCCS-
T ss_pred             HHHHhccccCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccH-HHHHHHHHHHHHcCC--CCeEEEEECchhhcCcC-
Confidence            334444455678899999999999999999986 4599999999 999999999988875  56799999999998876 


Q ss_pred             CCcceEEeccccccC---CChHHHHHHHHHhccCCcEEEEEEec
Q 019957          236 GFVDAVHAGAALHCW---PSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~---~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ++||+|++..+.+++   .++..+++++.++|||||++++....
T Consensus       128 ~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~  171 (376)
T 3r0q_C          128 EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR  171 (376)
T ss_dssp             SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred             CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence            799999996544443   56788999999999999999886544

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.58  E-value=8.2e-16  Score=133.43  Aligned_cols=144  Identities=16%  Similarity=0.113  Sum_probs=88.1

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE-ccCCCCCCCCCCcceEEe
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRLPFASGFVDAVHA  243 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~~lp~~~~~fD~V~~  243 (333)
                      .++.+|||||||+|.++..+++.+ ..+|+|+|+|+.|++.++++..........++.+.. .++....+....||++++
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~  114 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFI  114 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSS
T ss_pred             CCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhh
Confidence            346799999999999999999885 349999999999999877642211000011222222 222221122334555443


Q ss_pred             ccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH-hh--hccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-RI--LQNYNYLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       244 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                      +     +   ..+++++.++|||||.+++.......  ..  ...+.. ..  ..+.+..+.+++.++++++||+++...
T Consensus       115 ~-----l---~~~l~~i~rvLkpgG~lv~~~~p~~e--~~--~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~  182 (232)
T 3opn_A          115 S-----L---DLILPPLYEILEKNGEVAALIKPQFE--AG--REQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLT  182 (232)
T ss_dssp             C-----G---GGTHHHHHHHSCTTCEEEEEECHHHH--SC--HHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred             h-----H---HHHHHHHHHhccCCCEEEEEECcccc--cC--HHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEE
Confidence            3     2   67899999999999999986411100  00  000000 00  012233578999999999999988764


Q ss_pred             E
Q 019957          321 V  321 (333)
Q Consensus       321 ~  321 (333)
                      .
T Consensus       183 ~  183 (232)
T 3opn_A          183 F  183 (232)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.58  E-value=1.3e-14  Score=125.97  Aligned_cols=114  Identities=14%  Similarity=0.145  Sum_probs=94.8

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (333)
                      .....+.+.+...++.+|||||||+|.++..+++.++ .+|+++|+++.+++.+++++...+   ..++.++.+|+ ..+
T Consensus        78 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~-~~~  152 (235)
T 1jg1_A           78 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAG---VKNVHVILGDG-SKG  152 (235)
T ss_dssp             HHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCG-GGC
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEECCc-ccC
Confidence            3455666677777788999999999999999999874 699999999999999999988776   45699999997 334


Q ss_pred             CCC-CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          233 FAS-GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       233 ~~~-~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      +++ ..||+|++..+++++.+      ++.++|||||++++..+..
T Consensus       153 ~~~~~~fD~Ii~~~~~~~~~~------~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          153 FPPKAPYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             CGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEECSS
T ss_pred             CCCCCCccEEEECCcHHHHHH------HHHHhcCCCcEEEEEEecC
Confidence            433 35999999999998863      6889999999999988754

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.58  E-value=1.2e-14  Score=125.93  Aligned_cols=120  Identities=15%  Similarity=0.172  Sum_probs=99.6

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      .......+...+...++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++...++  ..++.++.+|+..
T Consensus        39 ~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~  116 (233)
T 2gpy_A           39 DLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGL--ESRIELLFGDALQ  116 (233)
T ss_dssp             CHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTC--TTTEEEECSCGGG
T ss_pred             CHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECCHHH
Confidence            34445666666666678899999999999999999987667999999999999999999988764  4579999999977


Q ss_pred             C-CCC--CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          231 L-PFA--SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       231 l-p~~--~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      . +..  +++||+|++....+   +...+++++.++|||||++++.+.
T Consensus       117 ~~~~~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~~~~  161 (233)
T 2gpy_A          117 LGEKLELYPLFDVLFIDAAKG---QYRRFFDMYSPMVRPGGLILSDNV  161 (233)
T ss_dssp             SHHHHTTSCCEEEEEEEGGGS---CHHHHHHHHGGGEEEEEEEEEETT
T ss_pred             HHHhcccCCCccEEEECCCHH---HHHHHHHHHHHHcCCCeEEEEEcC
Confidence            4 432  57899999987754   678899999999999999999754

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.57  E-value=8e-15  Score=130.50  Aligned_cols=142  Identities=14%  Similarity=0.204  Sum_probs=96.0

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEE-EccCCCCC---CCCCCcce
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV-RADVCRLP---FASGFVDA  240 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~-~~d~~~lp---~~~~~fD~  240 (333)
                      .++.+|||||||||.++..+++.+ ..+|+|+|+|+.|++.+.+.        .+++... ..++..++   ++..+||+
T Consensus        84 ~~g~~vLDiGcGTG~~t~~L~~~g-a~~V~aVDvs~~mL~~a~r~--------~~rv~~~~~~ni~~l~~~~l~~~~fD~  154 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQNG-AKLVYAVDVGTNQLVWKLRQ--------DDRVRSMEQYNFRYAEPVDFTEGLPSF  154 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSSSCSCHHHHT--------CTTEEEECSCCGGGCCGGGCTTCCCSE
T ss_pred             ccccEEEecCCCccHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh--------CcccceecccCceecchhhCCCCCCCE
Confidence            356799999999999999998885 45899999999999885442        2343322 23443332   23446999


Q ss_pred             EEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhh--hccCCCCCHHHHHHHHHhCCCcEEE
Q 019957          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI--LQNYNYLTEEEIEDLCTSCGLTNYT  318 (333)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~t~~~l~~ll~~aGf~~v~  318 (333)
                      |++..+++++   ..+|.++.++|||||.+++..-............   ...  ....+....+++..+++++||.+..
T Consensus       155 v~~d~sf~sl---~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~---~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~  228 (291)
T 3hp7_A          155 ASIDVSFISL---NLILPALAKILVDGGQVVALVKPQFEAGREQIGK---NGIVRESSIHEKVLETVTAFAVDYGFSVKG  228 (291)
T ss_dssp             EEECCSSSCG---GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC----CCCCCCHHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred             EEEEeeHhhH---HHHHHHHHHHcCcCCEEEEEECcccccChhhcCC---CCccCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence            9998887754   7789999999999999998642111000000000   000  0123345778999999999999887


Q ss_pred             EEE
Q 019957          319 SKV  321 (333)
Q Consensus       319 ~~~  321 (333)
                      ...
T Consensus       229 ~~~  231 (291)
T 3hp7_A          229 LDF  231 (291)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.57  E-value=1.7e-14  Score=126.28  Aligned_cols=104  Identities=19%  Similarity=0.351  Sum_probs=87.7

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--------CcCCCCCeEEEEccCCC-CC--C
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--------NTILTSNLALVRADVCR-LP--F  233 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--------~~~~~~~i~~~~~d~~~-lp--~  233 (333)
                      .++.+|||||||+|.++..+++.++...++|+|+|+.+++.+++++...        +   ..++.++.+|+.+ ++  +
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~---~~nv~~~~~D~~~~l~~~~  124 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHG---FQNINVLRGNAMKFLPNFF  124 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCST---TTTEEEEECCTTSCGGGTS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccC---CCcEEEEeccHHHHHHHhc
Confidence            3567899999999999999999988778999999999999999987754        4   4589999999986 55  6


Q ss_pred             CCCCcceEEeccccccCCCh-------------HHHHHHHHHhccCCcEEEEEEec
Q 019957          234 ASGFVDAVHAGAALHCWPSP-------------SNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~-------------~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      .++++|.|+..     +++|             ..+++++.++|||||.|++.+..
T Consensus       125 ~~~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~  175 (246)
T 2vdv_E          125 EKGQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV  175 (246)
T ss_dssp             CTTCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             cccccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence            67889998853     3454             47999999999999999997643

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.57  E-value=1.6e-14  Score=126.65  Aligned_cols=121  Identities=12%  Similarity=0.138  Sum_probs=96.3

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      ....+.+..++...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...++  ..++.++.+|+.+
T Consensus        49 ~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~--~~~v~~~~~d~~~  126 (248)
T 3tfw_A           49 ANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV--DQRVTLREGPALQ  126 (248)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC--TTTEEEEESCHHH
T ss_pred             HHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHH
Confidence            33444455444556678999999999999999999865 67999999999999999999988775  4689999999865


Q ss_pred             -CCCC--CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          231 -LPFA--SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       231 -lp~~--~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                       ++..  .++||+|++...   ..+...+++++.++|||||+|++.+...
T Consensus       127 ~l~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~~  173 (248)
T 3tfw_A          127 SLESLGECPAFDLIFIDAD---KPNNPHYLRWALRYSRPGTLIIGDNVVR  173 (248)
T ss_dssp             HHHTCCSCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred             HHHhcCCCCCeEEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence             3322  348999998654   3345678999999999999999876543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.57  E-value=1.7e-14  Score=132.82  Aligned_cols=116  Identities=18%  Similarity=0.234  Sum_probs=96.7

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      +.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.++++++.+++  ..++.++.+|+.+++++ 
T Consensus        40 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~l--~~~v~~~~~d~~~~~~~-  114 (348)
T 2y1w_A           40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSNNL--TDRIVVIPGKVEEVSLP-  114 (348)
T ss_dssp             HHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-HHHHHHHHHHHTTC--TTTEEEEESCTTTCCCS-
T ss_pred             HHHHhccccCCcCEEEEcCCCccHHHHHHHhCC-CCEEEEECCHH-HHHHHHHHHHHcCC--CCcEEEEEcchhhCCCC-
Confidence            445555666678899999999999999999874 46999999996 88999999888774  47899999999988765 


Q ss_pred             CCcceEEeccccccCCC--hHHHHHHHHHhccCCcEEEEEEec
Q 019957          236 GFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ++||+|++..+++|+.+  ....+.+++++|||||.+++....
T Consensus       115 ~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  157 (348)
T 2y1w_A          115 EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGD  157 (348)
T ss_dssp             SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCEEE
T ss_pred             CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEecCc
Confidence            58999999999888754  457888999999999999876543

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.57  E-value=5.1e-14  Score=129.91  Aligned_cols=125  Identities=20%  Similarity=0.072  Sum_probs=102.9

Q ss_pred             CCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc
Q 019957          148 FPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (333)
Q Consensus       148 ~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~  226 (333)
                      .+..+.....+.......++.+|||+|||+|.++..++..+ +..+++|+|+++.+++.|+++++..|+   .++.++++
T Consensus       185 a~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~---~~i~~~~~  261 (354)
T 3tma_A          185 GSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL---SWIRFLRA  261 (354)
T ss_dssp             CSCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC---TTCEEEEC
T ss_pred             CCcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC---CceEEEeC
Confidence            34556666777777777778899999999999999999976 667999999999999999999998874   38999999


Q ss_pred             cCCCCCCCCCCcceEEeccccccCCC--------hHHHHHHHHHhccCCcEEEEEEe
Q 019957          227 DVCRLPFASGFVDAVHAGAALHCWPS--------PSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       227 d~~~lp~~~~~fD~V~~~~vl~h~~d--------~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      |+.+++...+.||+|+++-.......        ...+++++.++|||||.+++.++
T Consensus       262 D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~  318 (354)
T 3tma_A          262 DARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL  318 (354)
T ss_dssp             CGGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred             ChhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            99998876778999999654432111        25789999999999999999885

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.57  E-value=2.2e-14  Score=123.36  Aligned_cols=121  Identities=15%  Similarity=0.113  Sum_probs=95.8

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      ....+.+..++...++.+|||||||+|..+..+++..+ ..+++++|+++.+++.+++++...++  ..++.++.+|+.+
T Consensus        44 ~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~  121 (223)
T 3duw_A           44 PTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL--NDRVEVRTGLALD  121 (223)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCHHH
T ss_pred             HHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHH
Confidence            44445555555556778999999999999999999865 56999999999999999999988774  4579999999865


Q ss_pred             C-C-CC---CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          231 L-P-FA---SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       231 l-p-~~---~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      . + +.   .++||+|++.....   +...+++++.++|||||++++.+...
T Consensus       122 ~~~~~~~~~~~~fD~v~~d~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~~  170 (223)
T 3duw_A          122 SLQQIENEKYEPFDFIFIDADKQ---NNPAYFEWALKLSRPGTVIIGDNVVR  170 (223)
T ss_dssp             HHHHHHHTTCCCCSEEEECSCGG---GHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred             HHHHHHhcCCCCcCEEEEcCCcH---HHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence            3 2 11   15799999876533   45688999999999999988876543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.56  E-value=7.2e-14  Score=121.98  Aligned_cols=116  Identities=12%  Similarity=0.100  Sum_probs=97.5

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ......+...+...++.+|||+|||+|.++..+++.  ..+++++|+++.+++.++++....++  ..++.++.+|+.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~  152 (248)
T 2yvl_A           77 PKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNL--GKNVKFFNVDFKDA  152 (248)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTC--CTTEEEECSCTTTS
T ss_pred             chhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCC--CCcEEEEEcChhhc
Confidence            334456677777777889999999999999999988  44999999999999999999887663  46899999999875


Q ss_pred             CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      .+.+++||+|++     +.+++..+++++.++|||||.+++.++.
T Consensus       153 ~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~  192 (248)
T 2yvl_A          153 EVPEGIFHAAFV-----DVREPWHYLEKVHKSLMEGAPVGFLLPT  192 (248)
T ss_dssp             CCCTTCBSEEEE-----CSSCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred             ccCCCcccEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            435678999997     4568888999999999999999998864

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.56  E-value=6.4e-15  Score=128.24  Aligned_cols=133  Identities=12%  Similarity=0.080  Sum_probs=99.3

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS----GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ..+...+...++.+|||||||+|..+..+++.    ++..+|+|+|+++.+++.|+.   .     ..++.++++|+.+.
T Consensus        71 ~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~---~-----~~~v~~~~gD~~~~  142 (236)
T 2bm8_A           71 AVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---D-----MENITLHQGDCSDL  142 (236)
T ss_dssp             HHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---G-----CTTEEEEECCSSCS
T ss_pred             HHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc---c-----CCceEEEECcchhH
Confidence            34444444445679999999999999999987    566799999999999887762   1     46899999999874


Q ss_pred             ---CCCC-CCcceEEeccccccCCChHHHHHHHHH-hccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHH
Q 019957          232 ---PFAS-GFVDAVHAGAALHCWPSPSNAVAEISR-ILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIE  306 (333)
Q Consensus       232 ---p~~~-~~fD~V~~~~vl~h~~d~~~~l~~~~r-~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~  306 (333)
                         +..+ .+||+|++...  | .+...++.++.+ +|||||++++.+..      +    .+.        .++.+.+.
T Consensus       143 ~~l~~~~~~~fD~I~~d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~~------~----~~~--------~~~~~~~~  201 (236)
T 2bm8_A          143 TTFEHLREMAHPLIFIDNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDMI------P----YWY--------RYAPQLFS  201 (236)
T ss_dssp             GGGGGGSSSCSSEEEEESS--C-SSHHHHHHHHHHHTCCTTCEEEECSCH------H----HHH--------HHCHHHHH
T ss_pred             HHHHhhccCCCCEEEECCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeCc------c----ccc--------ccCHHHHH
Confidence               5433 47999998765  4 377889999997 99999999997641      0    011        12345788


Q ss_pred             HHHHhC--CCcEE
Q 019957          307 DLCTSC--GLTNY  317 (333)
Q Consensus       307 ~ll~~a--Gf~~v  317 (333)
                      +++++.  +|+..
T Consensus       202 ~~l~~~~~~f~~~  214 (236)
T 2bm8_A          202 EYLGAFRDVLSMD  214 (236)
T ss_dssp             HHHHTTTTTEEEE
T ss_pred             HHHHhCcccEEEc
Confidence            888887  56654

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.56  E-value=2e-14  Score=134.81  Aligned_cols=125  Identities=11%  Similarity=0.017  Sum_probs=97.7

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHH-------HHHHHhcCcCCCCCeEEE
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQC-------YDFIKQDNTILTSNLALV  224 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a-------~~~~~~~~~~~~~~i~~~  224 (333)
                      ...+..+.+.+...++.+|||||||+|.++..+++..+..+|+|+|+++.+++.|       ++++...|+. ..++.++
T Consensus       228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~-~~nV~~i  306 (433)
T 1u2z_A          228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR-LNNVEFS  306 (433)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC-CCCEEEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC-CCceEEE
Confidence            3455666677777778899999999999999999875455899999999999888       8877776530 2589999


Q ss_pred             EccCCCC--CC--CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957          225 RADVCRL--PF--ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       225 ~~d~~~l--p~--~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      .+|....  ++  ..++||+|+++.++ +.+++...|+++.++|||||++++.++..+
T Consensus       307 ~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~f~p  363 (433)
T 1u2z_A          307 LKKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKSLRS  363 (433)
T ss_dssp             ESSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred             EcCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeeccCC
Confidence            8765432  22  24689999998776 446778889999999999999999865543

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.55  E-value=2e-14  Score=123.84  Aligned_cols=105  Identities=14%  Similarity=0.151  Sum_probs=87.2

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCC-CCeEEEEccCCCC-C-CCCCCcceEE
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILT-SNLALVRADVCRL-P-FASGFVDAVH  242 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~-~~i~~~~~d~~~l-p-~~~~~fD~V~  242 (333)
                      +.+|||||||+|..+..+++.. ++.+++++|+++.+++.|+++++..++  . .++.++.+|+.+. + +.+++||+|+
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--~~~~i~~~~gda~~~l~~~~~~~fD~V~  134 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGY--SPSRVRFLLSRPLDVMSRLANDSYQLVF  134 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTC--CGGGEEEECSCHHHHGGGSCTTCEEEEE
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CcCcEEEEEcCHHHHHHHhcCCCcCeEE
Confidence            3499999999999999999874 367999999999999999999998874  4 5899999998654 2 3367999999


Q ss_pred             eccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      +....   .+...+++++.++|||||++++.+..
T Consensus       135 ~d~~~---~~~~~~l~~~~~~LkpGG~lv~dn~~  165 (221)
T 3dr5_A          135 GQVSP---MDLKALVDAAWPLLRRGGALVLADAL  165 (221)
T ss_dssp             ECCCT---TTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred             EcCcH---HHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            87543   34567899999999999999995543

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.55  E-value=3e-14  Score=121.55  Aligned_cols=110  Identities=15%  Similarity=0.170  Sum_probs=90.0

Q ss_pred             HhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-CCCCCC
Q 019957          160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGF  237 (333)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~  237 (333)
                      ..+...++.+|||||||+|..+..+++..+ ..+++++|+++.+++.+++++...++  ..++.++.+|+.+. +..++ 
T Consensus        50 ~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~~~~~~-  126 (210)
T 3c3p_A           50 LLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL--IDRVELQVGDPLGIAAGQRD-  126 (210)
T ss_dssp             HHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG--GGGEEEEESCHHHHHTTCCS-
T ss_pred             HHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC--CceEEEEEecHHHHhccCCC-
Confidence            333344577999999999999999998855 67999999999999999999887764  45799999998653 44456 


Q ss_pred             cceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ||+|++...   ..+...+++++.++|||||++++.+.
T Consensus       127 fD~v~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~  161 (210)
T 3c3p_A          127 IDILFMDCD---VFNGADVLERMNRCLAKNALLIAVNA  161 (210)
T ss_dssp             EEEEEEETT---TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred             CCEEEEcCC---hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence            999998743   45678899999999999999998654

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.54  E-value=3.9e-14  Score=125.58  Aligned_cols=108  Identities=12%  Similarity=0.200  Sum_probs=84.5

Q ss_pred             CCCeEEEEcCCcCH----HHHHHHHhCC----CCeEEEEeCCHHHHHHHHHHHHh-----------------------cC
Q 019957          166 QGGLLVDVSCGSGL----FSRKFAKSGT----YSGVVALDFSENMLRQCYDFIKQ-----------------------DN  214 (333)
Q Consensus       166 ~~~~vLDiGcG~G~----~~~~l~~~~~----~~~v~g~D~s~~~~~~a~~~~~~-----------------------~~  214 (333)
                      ++.+|||+|||+|.    ++..+++..+    ..+|+|+|+|+.+++.|++..-.                       .+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35689999999998    5555665522    24899999999999999986410                       00


Q ss_pred             cC-----CCCCeEEEEccCCCCCCC-CCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEE
Q 019957          215 TI-----LTSNLALVRADVCRLPFA-SGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGT  273 (333)
Q Consensus       215 ~~-----~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~  273 (333)
                      ..     ...++.|.++|+.+.|++ .++||+|+|.+++.|+.++  .+++++++++|+|||.|++.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            00     013689999999886664 5789999999999999776  68999999999999999883

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.53  E-value=1.3e-13  Score=118.90  Aligned_cols=114  Identities=24%  Similarity=0.338  Sum_probs=91.9

Q ss_pred             HHHHhhc--ccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCc--CCCCCeEEEEccCCCC
Q 019957          157 MAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNT--ILTSNLALVRADVCRL  231 (333)
Q Consensus       157 ~~~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~--~~~~~i~~~~~d~~~l  231 (333)
                      .+.+.+.  ..++.+|||||||+|.++..+++. ++..+|+++|+++.+++.+++++...+.  ....++.++.+|+...
T Consensus        66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  145 (226)
T 1i1n_A           66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG  145 (226)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred             HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC
Confidence            4444443  456789999999999999999887 4456999999999999999998876431  0024799999999876


Q ss_pred             CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      +..+++||+|++..+++++.      +++.++|||||++++.+..
T Consensus       146 ~~~~~~fD~i~~~~~~~~~~------~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          146 YAEEAPYDAIHVGAAAPVVP------QALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             CGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred             cccCCCcCEEEECCchHHHH------HHHHHhcCCCcEEEEEEec
Confidence            65577899999999988764      6789999999999998754

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.53  E-value=4.3e-14  Score=129.02  Aligned_cols=119  Identities=10%  Similarity=0.044  Sum_probs=92.5

Q ss_pred             HHHHHHhhc-ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCC-CeEEEEccCCCCC
Q 019957          155 FKMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS-NLALVRADVCRLP  232 (333)
Q Consensus       155 ~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~-~i~~~~~d~~~lp  232 (333)
                      .+.+.+.+. ..++.+|||+|||+|.++..+++.+.  +|+++|+|+.+++.+++++..+++  .. ++.++++|+.++.
T Consensus       141 ~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl--~~~~v~~i~~D~~~~l  216 (332)
T 2igt_A          141 WEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGL--EQAPIRWICEDAMKFI  216 (332)
T ss_dssp             HHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTC--TTSCEEEECSCHHHHH
T ss_pred             HHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCC--CccceEEEECcHHHHH
Confidence            344555554 23567999999999999999999875  999999999999999999988774  22 4999999987643


Q ss_pred             C----CCCCcceEEecc----------ccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          233 F----ASGFVDAVHAGA----------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       233 ~----~~~~fD~V~~~~----------vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      .    .+++||+|++.-          ++++..+...+++++.++|||||.+++.....
T Consensus       217 ~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~  275 (332)
T 2igt_A          217 QREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  275 (332)
T ss_dssp             HHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             HHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence            1    156899999832          22334456788999999999999988877543

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.53  E-value=2.4e-13  Score=126.17  Aligned_cols=141  Identities=16%  Similarity=0.125  Sum_probs=110.8

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC
Q 019957          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (333)
                      +........+.... ..++.+|||+|||+|.++..++..++..+++|+|+|+.+++.|++++...|+  ..++.++++|+
T Consensus       201 ~l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl--~~~i~~~~~D~  277 (373)
T 3tm4_A          201 HLKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGV--LDKIKFIQGDA  277 (373)
T ss_dssp             CCCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTC--GGGCEEEECCG
T ss_pred             CccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCC--CCceEEEECCh
Confidence            34555666666666 6678899999999999999999987666899999999999999999998874  46899999999


Q ss_pred             CCCCCCCCCcceEEeccccccC-------CCh-HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCC
Q 019957          229 CRLPFASGFVDAVHAGAALHCW-------PSP-SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYL  300 (333)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~-------~d~-~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (333)
                      .++++.+++||+|+++-.+...       .+. ..+++++.++|  ||.+++.+.                         
T Consensus       278 ~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~-------------------------  330 (373)
T 3tm4_A          278 TQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT-------------------------  330 (373)
T ss_dssp             GGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES-------------------------
T ss_pred             hhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC-------------------------
Confidence            9998877899999996553321       111 56788888988  555555542                         


Q ss_pred             CHHHHHHHHHhCCCcEEEE
Q 019957          301 TEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       301 t~~~l~~ll~~aGf~~v~~  319 (333)
                      +.+.+.+.+++.||+..+.
T Consensus       331 ~~~~~~~~~~~~G~~~~~~  349 (373)
T 3tm4_A          331 EKKAIEEAIAENGFEIIHH  349 (373)
T ss_dssp             CHHHHHHHHHHTTEEEEEE
T ss_pred             CHHHHHHHHHHcCCEEEEE
Confidence            3467788999999998764

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.53  E-value=1.3e-14  Score=142.03  Aligned_cols=108  Identities=16%  Similarity=0.226  Sum_probs=92.7

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC--CCCCCCcceEEe
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHA  243 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~~  243 (333)
                      ++.+|||||||+|.++..|++.|.  +|+|+|+++.+++.|+.+..+.|   ..+++|.+++++++  ++.+++||+|++
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga--~V~giD~~~~~i~~a~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~v~~  140 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGA--TIVGIDFQQENINVCRALAEENP---DFAAEFRVGRIEEVIAALEEGEFDLAIG  140 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTST---TSEEEEEECCHHHHHHHCCTTSCSEEEE
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCC--EEEEECCCHHHHHHHHHHHHhcC---CCceEEEECCHHHHhhhccCCCccEEEE
Confidence            467999999999999999999976  99999999999999999988765   45799999999887  456789999999


Q ss_pred             ccccccCCChHH--HHHHHHHhccCCcEEEEEEeccc
Q 019957          244 GAALHCWPSPSN--AVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       244 ~~vl~h~~d~~~--~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      ..+|||++|+..  .+..+.+.|+++|..++......
T Consensus       141 ~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~  177 (569)
T 4azs_A          141 LSVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVK  177 (569)
T ss_dssp             ESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCT
T ss_pred             CcchhcCCCHHHHHHHHHHHHHhccccceeeEEeccc
Confidence            999999998863  35567778889888887776553

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.52  E-value=2.8e-14  Score=122.90  Aligned_cols=121  Identities=14%  Similarity=0.144  Sum_probs=95.4

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      ....+.+...+...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.+++++...++  ..++.++.+|+.+
T Consensus        50 ~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~  127 (225)
T 3tr6_A           50 PEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL--SDKIGLRLSPAKD  127 (225)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCHHH
T ss_pred             HHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCceEEEeCCHHH
Confidence            33444555555555678999999999999999999854 67999999999999999999988774  4579999999854


Q ss_pred             C-C-CCC----CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          231 L-P-FAS----GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       231 l-p-~~~----~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      . + +..    ++||+|++...   ..+...+++++.++|||||++++.+...
T Consensus       128 ~~~~~~~~~~~~~fD~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~  177 (225)
T 3tr6_A          128 TLAELIHAGQAWQYDLIYIDAD---KANTDLYYEESLKLLREGGLIAVDNVLR  177 (225)
T ss_dssp             HHHHHHTTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred             HHHHhhhccCCCCccEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence            3 2 111    78999997654   2346788999999999999999976543

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.52  E-value=1.1e-13  Score=119.46  Aligned_cols=115  Identities=19%  Similarity=0.272  Sum_probs=92.8

Q ss_pred             HHHHHhh--cccCCCeEEEEcCCcCHHHHHHHHhC-----CCCeEEEEeCCHHHHHHHHHHHHhcCcC--CCCCeEEEEc
Q 019957          156 KMAQEYF--KSAQGGLLVDVSCGSGLFSRKFAKSG-----TYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRA  226 (333)
Q Consensus       156 ~~~~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~g~D~s~~~~~~a~~~~~~~~~~--~~~~i~~~~~  226 (333)
                      ..+.+.+  ...++.+|||||||+|.++..+++..     +..+|+++|+++.+++.+++++...++.  ...++.++.+
T Consensus        68 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  147 (227)
T 2pbf_A           68 ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHK  147 (227)
T ss_dssp             HHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEEC
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEEC
Confidence            3444444  34567899999999999999999875     4569999999999999999998775410  0247999999


Q ss_pred             cCCCCC----CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          227 DVCRLP----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       227 d~~~lp----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      |+....    ...++||+|++..+++|+      ++++.++|||||++++..+.
T Consensus       148 d~~~~~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          148 NIYQVNEEEKKELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             CGGGCCHHHHHHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEEE
T ss_pred             ChHhcccccCccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEcc
Confidence            998765    556789999999999886      47889999999999998764

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.52  E-value=2.2e-14  Score=125.74  Aligned_cols=118  Identities=19%  Similarity=0.117  Sum_probs=88.1

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHhc---CcCCCCC----------
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQD---NTILTSN----------  220 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~g~D~s~~~~~~a~~~~~~~---~~~~~~~----------  220 (333)
                      +.+.+.+...++.+|||+|||+|.++..+++.  .+..+++|+|+|+.+++.|++++...   ++  ..+          
T Consensus        41 ~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~--~~~~~~~~~~~~~  118 (250)
T 1o9g_A           41 QRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGL--TARELERREQSER  118 (250)
T ss_dssp             HHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHH--HHHHHHHHHHHHH
T ss_pred             HHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccc--cccchhhhhhhhh
Confidence            33333333335679999999999999999887  44558999999999999999877654   21  111          


Q ss_pred             ---------------eE-------------EEEccCCCCCC-----CCCCcceEEeccccccCCC---------hHHHHH
Q 019957          221 ---------------LA-------------LVRADVCRLPF-----ASGFVDAVHAGAALHCWPS---------PSNAVA  258 (333)
Q Consensus       221 ---------------i~-------------~~~~d~~~lp~-----~~~~fD~V~~~~vl~h~~d---------~~~~l~  258 (333)
                                     +.             ++++|+.+...     ..++||+|+++..+.+..+         ...+++
T Consensus       119 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~  198 (250)
T 1o9g_A          119 FGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLR  198 (250)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHH
Confidence                           55             99999877421     3458999999876665543         348899


Q ss_pred             HHHHhccCCcEEEEEEe
Q 019957          259 EISRILRSGGVFVGTTF  275 (333)
Q Consensus       259 ~~~r~LkpgG~l~i~~~  275 (333)
                      ++.++|||||++++...
T Consensus       199 ~~~~~LkpgG~l~~~~~  215 (250)
T 1o9g_A          199 SLASALPAHAVIAVTDR  215 (250)
T ss_dssp             HHHHHSCTTCEEEEEES
T ss_pred             HHHHhcCCCcEEEEeCc
Confidence            99999999999999443

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.52  E-value=7.8e-15  Score=128.17  Aligned_cols=121  Identities=9%  Similarity=0.081  Sum_probs=96.9

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      ....+.+..++...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|+++++..++  ..++.++.+|+.+
T Consensus        46 ~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~--~~~i~~~~gda~~  123 (242)
T 3r3h_A           46 PEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ--EHKIKLRLGPALD  123 (242)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC--TTTEEEEESCHHH
T ss_pred             HHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHH
Confidence            34445555555555678999999999999999998754 67999999999999999999988875  5689999999865


Q ss_pred             C-CCC-----CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          231 L-PFA-----SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       231 l-p~~-----~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      . +..     +++||+|++...   ..+...+++++.++|||||++++.+...
T Consensus       124 ~l~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~  173 (242)
T 3r3h_A          124 TLHSLLNEGGEHQFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFW  173 (242)
T ss_dssp             HHHHHHHHHCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred             HHHHHhhccCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCcc
Confidence            4 221     478999998765   2345678999999999999999976554

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.51  E-value=6.4e-14  Score=122.71  Aligned_cols=119  Identities=13%  Similarity=0.117  Sum_probs=94.9

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      .....+...+...++.+|||||||+|..+..+++..+ +.+++++|+++.+++.|+++++..++  ..++.++.+|+.+.
T Consensus        66 ~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--~~~i~~~~gda~~~  143 (247)
T 1sui_A           66 DEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV--DHKIDFREGPALPV  143 (247)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC--GGGEEEEESCHHHH
T ss_pred             HHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCCeEEEECCHHHH
Confidence            3334444444555677999999999999999999855 57999999999999999999988774  46899999998653


Q ss_pred             -C-C-----CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          232 -P-F-----ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       232 -p-~-----~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                       + +     .+++||+|++...   ..+...+++++.++|||||++++....
T Consensus       144 l~~l~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~  192 (247)
T 1sui_A          144 LDEMIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNTL  192 (247)
T ss_dssp             HHHHHHSGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEECTT
T ss_pred             HHHHHhccCCCCCEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence             3 1     1578999998754   345678899999999999999886543

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.51  E-value=4.6e-14  Score=125.56  Aligned_cols=119  Identities=14%  Similarity=0.161  Sum_probs=95.1

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC--
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--  233 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--  233 (333)
                      .+...+...++.+|||+|||+|..+..+++..++ .+|+++|+++.+++.++++++..+   ..++.++.+|+..++.  
T Consensus        74 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g---~~~v~~~~~D~~~~~~~~  150 (274)
T 3ajd_A           74 IPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMG---VLNTIIINADMRKYKDYL  150 (274)
T ss_dssp             HHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCHHHHHHHH
T ss_pred             HHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhC---CCcEEEEeCChHhcchhh
Confidence            3445566677889999999999999999986543 699999999999999999998877   4589999999987653  


Q ss_pred             --CCCCcceEEec------cccc------------cCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957          234 --ASGFVDAVHAG------AALH------------CWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       234 --~~~~fD~V~~~------~vl~------------h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                        ..++||+|++.      +++.            .......+|+++.++|||||++++.+....
T Consensus       151 ~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~  215 (274)
T 3ajd_A          151 LKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSME  215 (274)
T ss_dssp             HHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred             hhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence              25789999986      2222            224557899999999999999999886553

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.51  E-value=2.4e-13  Score=129.23  Aligned_cols=123  Identities=18%  Similarity=0.251  Sum_probs=100.9

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      +.....+...+...++.+|||+|||+|..+..++...++ .+++++|+++.+++.++++++..|   ..++.++.+|+..
T Consensus       245 d~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g---~~~v~~~~~D~~~  321 (450)
T 2yxl_A          245 EEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG---IKIVKPLVKDARK  321 (450)
T ss_dssp             CHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTT---CCSEEEECSCTTC
T ss_pred             CchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC---CCcEEEEEcChhh
Confidence            333455566677778889999999999999999987544 699999999999999999998877   4579999999988


Q ss_pred             CC--CCCCCcceEEe------ccccccCCCh----------------HHHHHHHHHhccCCcEEEEEEecc
Q 019957          231 LP--FASGFVDAVHA------GAALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       231 lp--~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      ++  +.+++||+|++      .+++++.++.                ..+|+++.++|||||.+++.+...
T Consensus       322 ~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~  392 (450)
T 2yxl_A          322 APEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI  392 (450)
T ss_dssp             CSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             cchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            76  55578999996      4556665554                568999999999999999988654

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.50  E-value=1.4e-13  Score=127.05  Aligned_cols=105  Identities=21%  Similarity=0.341  Sum_probs=90.0

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (333)
                      ..++++|||||||+|.++..+++.| ..+|+++|.|+ +++.|++.++.+++  ..++.++.++++++.++ ++||+|++
T Consensus        81 ~~~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~-~~~~a~~~~~~n~~--~~~i~~i~~~~~~~~lp-e~~Dvivs  155 (376)
T 4hc4_A           81 ALRGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASA-IWQQAREVVRFNGL--EDRVHVLPGPVETVELP-EQVDAIVS  155 (376)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-THHHHHHHHHHTTC--TTTEEEEESCTTTCCCS-SCEEEEEC
T ss_pred             hcCCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChH-HHHHHHHHHHHcCC--CceEEEEeeeeeeecCC-ccccEEEe
Confidence            3468899999999999999888887 45899999996 88999999999886  67899999999998765 68999998


Q ss_pred             ---ccccccCCChHHHHHHHHHhccCCcEEEEE
Q 019957          244 ---GAALHCWPSPSNAVAEISRILRSGGVFVGT  273 (333)
Q Consensus       244 ---~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~  273 (333)
                         ...|.+-.....++....++|||||.++-.
T Consensus       156 E~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~  188 (376)
T 4hc4_A          156 EWMGYGLLHESMLSSVLHARTKWLKEGGLLLPA  188 (376)
T ss_dssp             CCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred             ecccccccccchhhhHHHHHHhhCCCCceECCc
Confidence               555666667788999999999999998753

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.50  E-value=1.6e-13  Score=121.87  Aligned_cols=106  Identities=20%  Similarity=0.214  Sum_probs=91.8

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (333)
                      ..++.+|||+|||+|.++..+++.++..+|+|+|+++.+++.++++++.++   ..++.++.+|+.+.+. .++||+|++
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~---l~~~~~~~~d~~~~~~-~~~~D~Vi~  192 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNK---LNNVIPILADNRDVEL-KDVADRVIM  192 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTT---CSSEEEEESCGGGCCC-TTCEEEEEE
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCEEEEECChHHcCc-cCCceEEEE
Confidence            346789999999999999999998666799999999999999999998877   4578999999988743 678999998


Q ss_pred             ccccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       244 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      ....    +...++.++.+.|||||.+++.+...
T Consensus       193 d~p~----~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          193 GYVH----KTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             CCCS----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCcc----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence            7653    56778999999999999999988655

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.50  E-value=2.1e-13  Score=115.24  Aligned_cols=98  Identities=12%  Similarity=0.303  Sum_probs=78.9

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCC--CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC----------
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGT--YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----------  232 (333)
                      .++.+|||+|||+|.++..+++..+  ..+|+|+|+++..           .   ..++.++++|+.+.+          
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~---~~~v~~~~~d~~~~~~~~~~~~~~i   86 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------P---IPNVYFIQGEIGKDNMNNIKNINYI   86 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------C---CTTCEEEECCTTTTSSCCC------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------C---CCCceEEEccccchhhhhhcccccc
Confidence            4567999999999999999998865  5799999999831           1   457899999998876          


Q ss_pred             ---------------CCCCCcceEEeccccccCC----ChH-------HHHHHHHHhccCCcEEEEEEec
Q 019957          233 ---------------FASGFVDAVHAGAALHCWP----SPS-------NAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       233 ---------------~~~~~fD~V~~~~vl~h~~----d~~-------~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                                     +++++||+|++..++++..    +..       .+++++.++|||||.+++..+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  156 (201)
T 2plw_A           87 DNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL  156 (201)
T ss_dssp             -----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence                           5567999999988777642    222       3788999999999999987653

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.50  E-value=1.2e-13  Score=132.02  Aligned_cols=114  Identities=18%  Similarity=0.271  Sum_probs=94.2

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      +.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|++++..+++  ..++.++.+|+.+++++ 
T Consensus       148 ~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~-~~~V~gvD~s~-~l~~A~~~~~~~gl--~~~v~~~~~d~~~~~~~-  222 (480)
T 3b3j_A          148 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSNNL--TDRIVVIPGKVEEVSLP-  222 (480)
T ss_dssp             HHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTT-CSEEEEEECHH-HHHHHHHHHHHTTC--TTTEEEEESCTTTCCCS-
T ss_pred             HHHHHhhhhcCCCEEEEecCcccHHHHHHHHcC-CCEEEEEEcHH-HHHHHHHHHHHcCC--CCcEEEEECchhhCccC-
Confidence            344455555567899999999999999998864 56999999998 99999999888774  57899999999987654 


Q ss_pred             CCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEE
Q 019957          236 GFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      ++||+|++..+++|+.+.  ...+.++.++|||||.+++..
T Consensus       223 ~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          223 EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  263 (480)
T ss_dssp             SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred             CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            589999998888887654  567788899999999998644

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.49  E-value=4.3e-13  Score=120.64  Aligned_cols=106  Identities=14%  Similarity=0.182  Sum_probs=85.8

Q ss_pred             CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC--CCCCCCcceEEecc
Q 019957          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHAGA  245 (333)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~~~~  245 (333)
                      .+|||||||+|.++..+.+..+..+++++|+++.+++.|++++....   .++++++.+|+.++  .+.+++||+|++..
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~---~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~  167 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR---APRVKIRVDDARMVAESFTPASRDVIIRDV  167 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC---TTTEEEEESCHHHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC---CCceEEEECcHHHHHhhccCCCCCEEEECC
Confidence            49999999999999999998777799999999999999999876432   56899999998654  23467999999854


Q ss_pred             ccccC-C---ChHHHHHHHHHhccCCcEEEEEEec
Q 019957          246 ALHCW-P---SPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       246 vl~h~-~---d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ..+.. +   ....++++++++|||||++++....
T Consensus       168 ~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~  202 (317)
T 3gjy_A          168 FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD  202 (317)
T ss_dssp             STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence            33221 1   1267899999999999999987753

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.49  E-value=1.1e-12  Score=121.75  Aligned_cols=105  Identities=13%  Similarity=0.032  Sum_probs=87.6

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CCC-CCCCcceEE
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPF-ASGFVDAVH  242 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~-~~~~fD~V~  242 (333)
                      .++.+|||+| |+|.++..++..++..+|+|+|+++.+++.|+++++..|+   .++.++.+|+.+ +|. .+++||+|+
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~---~~v~~~~~D~~~~l~~~~~~~fD~Vi  246 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY---EDIEIFTFDLRKPLPDYALHKFDTFI  246 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC---CCEEEECCCTTSCCCTTTSSCBSEEE
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCEEEEEChhhhhchhhccCCccEEE
Confidence            3578999999 9999999999887667999999999999999999988774   389999999988 764 356899999


Q ss_pred             eccccccCCChHHHHHHHHHhccCCcEE-EEEE
Q 019957          243 AGAALHCWPSPSNAVAEISRILRSGGVF-VGTT  274 (333)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l-~i~~  274 (333)
                      ++..+++.. ...+++++.++|||||++ ++..
T Consensus       247 ~~~p~~~~~-~~~~l~~~~~~LkpgG~~~~~~~  278 (373)
T 2qm3_A          247 TDPPETLEA-IRAFVGRGIATLKGPRCAGYFGI  278 (373)
T ss_dssp             ECCCSSHHH-HHHHHHHHHHTBCSTTCEEEEEE
T ss_pred             ECCCCchHH-HHHHHHHHHHHcccCCeEEEEEE
Confidence            986654332 478899999999999954 5544

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.49  E-value=2.7e-13  Score=121.15  Aligned_cols=117  Identities=17%  Similarity=0.177  Sum_probs=92.2

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      +..++.+.+.+...++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|+++....++  ..++.++++|+.+.
T Consensus       109 e~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l--~~~v~~~~~D~~~~  185 (284)
T 1nv8_A          109 EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGV--SDRFFVRKGEFLEP  185 (284)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTC--TTSEEEEESSTTGG
T ss_pred             HHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECcchhh
Confidence            344555556555445679999999999999999998 677999999999999999999988774  34699999999773


Q ss_pred             CCCCCCc---ceEEec------------cccccCC--------ChHHHHHHHH-HhccCCcEEEEEE
Q 019957          232 PFASGFV---DAVHAG------------AALHCWP--------SPSNAVAEIS-RILRSGGVFVGTT  274 (333)
Q Consensus       232 p~~~~~f---D~V~~~------------~vl~h~~--------d~~~~l~~~~-r~LkpgG~l~i~~  274 (333)
                       +. ++|   |+|+++            .+. |.+        |...+++++. +.|+|||.+++..
T Consensus       186 -~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~  249 (284)
T 1nv8_A          186 -FK-EKFASIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI  249 (284)
T ss_dssp             -GG-GGTTTCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred             -cc-cccCCCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence             22 479   999996            222 322        2237899999 9999999999854

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.48  E-value=1.7e-13  Score=118.79  Aligned_cols=118  Identities=13%  Similarity=0.090  Sum_probs=93.2

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC--
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--  230 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~--  230 (333)
                      ..+.+...+...++.+|||||||+|..+..+++..+ ..+++++|+++.+++.|++++...++  ..++.++.+|+.+  
T Consensus        60 ~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~--~~~i~~~~~d~~~~l  137 (232)
T 3cbg_A           60 QAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV--AEKISLRLGPALATL  137 (232)
T ss_dssp             HHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESCHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHH
Confidence            334444444445677999999999999999998754 56999999999999999999887764  4579999999744  


Q ss_pred             --CCCCC--CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          231 --LPFAS--GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       231 --lp~~~--~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                        ++..+  ++||+|++....   .+...+++++.++|+|||++++.+..
T Consensus       138 ~~l~~~~~~~~fD~V~~d~~~---~~~~~~l~~~~~~LkpgG~lv~~~~~  184 (232)
T 3cbg_A          138 EQLTQGKPLPEFDLIFIDADK---RNYPRYYEIGLNLLRRGGLMVIDNVL  184 (232)
T ss_dssp             HHHHTSSSCCCEEEEEECSCG---GGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred             HHHHhcCCCCCcCEEEECCCH---HHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence              23323  789999987652   34578899999999999999997644

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.48  E-value=1.3e-13  Score=120.02  Aligned_cols=121  Identities=18%  Similarity=0.214  Sum_probs=95.8

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (333)
                      .....+.+...+...++.+|||||||+|.++..+++..+ ..+++++|+++.+++.+++++...++  ..++.++.+|+.
T Consensus        45 ~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--~~~v~~~~~d~~  122 (239)
T 2hnk_A           45 SPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL--ENKIFLKLGSAL  122 (239)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHH
T ss_pred             CHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCCEEEEECCHH
Confidence            334445666666666788999999999999999999864 56999999999999999999888764  345999999985


Q ss_pred             CC-C--------------CCC--CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          230 RL-P--------------FAS--GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       230 ~l-p--------------~~~--~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      +. +              |++  ++||+|++....+   +...+++++.++|||||++++.+..
T Consensus       123 ~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~  183 (239)
T 2hnk_A          123 ETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKE---NYPNYYPLILKLLKPGGLLIADNVL  183 (239)
T ss_dssp             HHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG---GHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             HHHHHHHhhcccccccccccCCCCCcCEEEEeCCHH---HHHHHHHHHHHHcCCCeEEEEEccc
Confidence            42 2              222  7899999886544   3467899999999999999997643

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.47  E-value=2.6e-12  Score=108.96  Aligned_cols=137  Identities=13%  Similarity=0.108  Sum_probs=100.4

Q ss_pred             CcHHHHHHHHHhh---cccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc
Q 019957          150 GPDEEFKMAQEYF---KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (333)
Q Consensus       150 ~~~~~~~~~~~~l---~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~  226 (333)
                      ........+...+   ...++.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.+++++...+   . ++.++.+
T Consensus        30 ~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~---~-~~~~~~~  104 (207)
T 1wy7_A           30 TPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFK---G-KFKVFIG  104 (207)
T ss_dssp             CCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGT---T-SEEEEES
T ss_pred             CchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcC---C-CEEEEEC
Confidence            3344444444333   24467899999999999999999885 3479999999999999999987765   2 7999999


Q ss_pred             cCCCCCCCCCCcceEEeccccccCC--ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHH
Q 019957          227 DVCRLPFASGFVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEE  304 (333)
Q Consensus       227 d~~~lp~~~~~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~  304 (333)
                      |+.+++   ++||+|+++..+++..  ....+++++.+++  |+.+++.....                      -+.+.
T Consensus       105 d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~~~~~----------------------~~~~~  157 (207)
T 1wy7_A          105 DVSEFN---SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIHLAKP----------------------EVRRF  157 (207)
T ss_dssp             CGGGCC---CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEEECCH----------------------HHHHH
T ss_pred             chHHcC---CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEEeCCc----------------------CCHHH
Confidence            998875   4899999988877664  3357889999988  55444432111                      02345


Q ss_pred             HHHHHHhCCCcEEE
Q 019957          305 IEDLCTSCGLTNYT  318 (333)
Q Consensus       305 l~~ll~~aGf~~v~  318 (333)
                      +.+.+++.||++..
T Consensus       158 ~~~~l~~~g~~~~~  171 (207)
T 1wy7_A          158 IEKFSWEHGFVVTH  171 (207)
T ss_dssp             HHHHHHHTTEEEEE
T ss_pred             HHHHHHHCCCeEEE
Confidence            67788899987654

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.47  E-value=2.2e-13  Score=117.53  Aligned_cols=114  Identities=24%  Similarity=0.358  Sum_probs=89.5

Q ss_pred             HHHHHhh--cccCCCeEEEEcCCcCHHHHHHHHhCC------CCeEEEEeCCHHHHHHHHHHHHhcCcC--CCCCeEEEE
Q 019957          156 KMAQEYF--KSAQGGLLVDVSCGSGLFSRKFAKSGT------YSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVR  225 (333)
Q Consensus       156 ~~~~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~~------~~~v~g~D~s~~~~~~a~~~~~~~~~~--~~~~i~~~~  225 (333)
                      ..+.+.+  ...++.+|||||||+|.++..+++...      ..+|+++|+++.+++.+++++...+..  ...++.++.
T Consensus        72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  151 (227)
T 1r18_A           72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE  151 (227)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEE
Confidence            4445555  345678999999999999999988532      248999999999999999987654200  024789999


Q ss_pred             ccCCCCCCCC-CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          226 ADVCRLPFAS-GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       226 ~d~~~lp~~~-~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      +|... ++++ ++||+|++..+++|+.      +++.++|||||++++....
T Consensus       152 ~d~~~-~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          152 GDGRK-GYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             SCGGG-CCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred             CCccc-CCCcCCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEec
Confidence            99977 3333 7899999999999875      6889999999999998754

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.47  E-value=5.8e-14  Score=125.57  Aligned_cols=115  Identities=17%  Similarity=0.212  Sum_probs=89.4

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      .....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.++++....+.  ..++.++.+|+.+
T Consensus        13 d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~D~~~   88 (285)
T 1zq9_A           13 NPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPV--ASKLQVLVGDVLK   88 (285)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTT--GGGEEEEESCTTT
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEcceec
Confidence            344567777777777788999999999999999999875  999999999999999998866542  3579999999988


Q ss_pred             CCCCCCCcceEEec-----------cccccCCChHHHH----HHH--HHhccCCcEEE
Q 019957          231 LPFASGFVDAVHAG-----------AALHCWPSPSNAV----AEI--SRILRSGGVFV  271 (333)
Q Consensus       231 lp~~~~~fD~V~~~-----------~vl~h~~d~~~~l----~~~--~r~LkpgG~l~  271 (333)
                      ++++  +||+|+++           .+++|.++....+    +|+  +++|+|||.++
T Consensus        89 ~~~~--~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           89 TDLP--FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             SCCC--CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             ccch--hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            7764  79999996           4555555443211    333  46899999654

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.46  E-value=7e-13  Score=117.89  Aligned_cols=147  Identities=12%  Similarity=0.108  Sum_probs=104.5

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CcCCCCCeEEEEccCCC-CCCCCCCcceEE
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCR-LPFASGFVDAVH  242 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~-lp~~~~~fD~V~  242 (333)
                      .+.+|||||||+|.++..+.+..+..+++++|+++.+++.|++++...  ++ ..++++++.+|+.. ++..+++||+|+
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~-~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL-DDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT-TSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcccc-CCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            467999999999999999998754679999999999999999987531  11 14689999999865 333357899999


Q ss_pred             eccccccCCC----hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEE
Q 019957          243 AGAALHCWPS----PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT  318 (333)
Q Consensus       243 ~~~vl~h~~d----~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~  318 (333)
                      +....++.+.    ...+++++.++|||||++++...+..      ....            ...++.+.+++. |..+.
T Consensus       154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~------~~~~------------~~~~~~~~l~~~-F~~v~  214 (275)
T 1iy9_A          154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPW------FTPE------------LITNVQRDVKEI-FPITK  214 (275)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTT------TCHH------------HHHHHHHHHHTT-CSEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcc------ccHH------------HHHHHHHHHHHh-CCCeE
Confidence            9654322221    25789999999999999999753321      0000            123555667776 77666


Q ss_pred             EEE-------eCeEEEEEEeC
Q 019957          319 SKV-------QQSFIMFAAQK  332 (333)
Q Consensus       319 ~~~-------~~~~~~~~a~k  332 (333)
                      ...       .+.|.++.++|
T Consensus       215 ~~~~~vp~~~~g~w~~~~ask  235 (275)
T 1iy9_A          215 LYTANIPTYPSGLWTFTIGSK  235 (275)
T ss_dssp             EEEECCTTSGGGCEEEEEEES
T ss_pred             EEEEecCcccCcceEEEEeeC
Confidence            543       35666666665

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.45  E-value=2.6e-13  Score=117.13  Aligned_cols=119  Identities=15%  Similarity=0.122  Sum_probs=94.2

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ...+.+.......++.+|||||||+|.++..+++..+ ..+++++|+++.+++.+++++...++  ..++.++.+|+.+.
T Consensus        56 ~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~--~~~i~~~~~d~~~~  133 (229)
T 2avd_A           56 EQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA--EHKIDLRLKPALET  133 (229)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC--TTTEEEEESCHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC--CCeEEEEEcCHHHH
Confidence            3344555555555678999999999999999998754 56999999999999999999988774  46899999998543


Q ss_pred             -C-CCC----CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          232 -P-FAS----GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       232 -p-~~~----~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                       + +.+    ++||+|++...   ..+...+++++.++|+|||++++.+..
T Consensus       134 ~~~~~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~  181 (229)
T 2avd_A          134 LDELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRVL  181 (229)
T ss_dssp             HHHHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             HHHHHhcCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence             1 111    68999998654   345578899999999999999997644

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.45  E-value=1.6e-12  Score=117.83  Aligned_cols=110  Identities=17%  Similarity=0.101  Sum_probs=86.8

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh--cCcCCCCCeEEEEccCCC-CCCCCCCcceEE
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ--DNTILTSNLALVRADVCR-LPFASGFVDAVH  242 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~~~~~~~i~~~~~d~~~-lp~~~~~fD~V~  242 (333)
                      .+.+|||||||+|.++..+++..+..+++++|+++.+++.|++++..  .+....+++.++.+|+.+ ++..+++||+|+
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence            45799999999999999999876567999999999999999998754  110014689999999876 333467899999


Q ss_pred             ecccccc-CCC------hHHHHHHHHHhccCCcEEEEEEe
Q 019957          243 AGAALHC-WPS------PSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       243 ~~~vl~h-~~d------~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      +....++ ...      ...+++++.++|||||++++...
T Consensus       157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  196 (314)
T 1uir_A          157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (314)
T ss_dssp             EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence            9765543 112      26889999999999999999754

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.45  E-value=6.2e-14  Score=128.93  Aligned_cols=109  Identities=17%  Similarity=0.179  Sum_probs=85.2

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCC------cCHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCG------SGLFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG------~G~~~~~l~~-~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~  226 (333)
                      ..+.+...+.. ++.+|||||||      +|..+..+.+ .++..+|+|+|+|+.+.       ..     .+++.++++
T Consensus       205 ~Ye~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-------~~-----~~rI~fv~G  271 (419)
T 3sso_A          205 HYDRHFRDYRN-QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-------VD-----ELRIRTIQG  271 (419)
T ss_dssp             HHHHHHGGGTT-SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-------GC-----BTTEEEEEC
T ss_pred             HHHHHHHhhcC-CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-------hc-----CCCcEEEEe
Confidence            34444443432 46799999999      6555555554 45778999999999872       11     568999999


Q ss_pred             cCCCCCCC------CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          227 DVCRLPFA------SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       227 d~~~lp~~------~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      |+.++++.      +++||+|++.. .+++.+...+|+++.++|||||++++.+..
T Consensus       272 Da~dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          272 DQNDAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             CTTCHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             cccccchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            99998876      68999999875 467778889999999999999999998866

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.44  E-value=1.7e-12  Score=116.63  Aligned_cols=109  Identities=13%  Similarity=0.077  Sum_probs=83.5

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh--cCcCCCCCeEEEEccCCC-CCCCCCCcceEE
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ--DNTILTSNLALVRADVCR-LPFASGFVDAVH  242 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~~~~~~~i~~~~~d~~~-lp~~~~~fD~V~  242 (333)
                      .+.+|||||||+|.++..+++..+..+++++|+++.+++.+++++..  .++ ..+++.++.+|+.. ++..+++||+|+
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~-~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF-DDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG-GCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccc-CCCceEEEECcHHHHHhhCCCCceEEE
Confidence            45799999999999999999875567999999999999999998753  111 14689999999865 333457899999


Q ss_pred             eccccccCC-----ChHHHHHHHHHhccCCcEEEEEEe
Q 019957          243 AGAALHCWP-----SPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       243 ~~~vl~h~~-----d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      +...-.++.     ....+++++.++|||||++++...
T Consensus       169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  206 (296)
T 1inl_A          169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE  206 (296)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence            853321021     226889999999999999999753

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.44  E-value=3.5e-13  Score=117.27  Aligned_cols=117  Identities=15%  Similarity=0.167  Sum_probs=93.0

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-  231 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-  231 (333)
                      ..+.+...+...++.+|||||||+|..+..+++..+ ..+++++|+++.+++.|+++++..++  ..++.++.+|+.+. 
T Consensus        58 ~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~--~~~i~~~~gda~~~l  135 (237)
T 3c3y_A           58 AGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV--EHKINFIESDAMLAL  135 (237)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHHHHH
T ss_pred             HHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHH
Confidence            334444444555677999999999999999998854 67999999999999999999988774  45799999998653 


Q ss_pred             C-C-----CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          232 P-F-----ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       232 p-~-----~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      + +     .+++||+|++....   .+...+++++.++|||||++++.+.
T Consensus       136 ~~l~~~~~~~~~fD~I~~d~~~---~~~~~~l~~~~~~L~pGG~lv~d~~  182 (237)
T 3c3y_A          136 DNLLQGQESEGSYDFGFVDADK---PNYIKYHERLMKLVKVGGIVAYDNT  182 (237)
T ss_dssp             HHHHHSTTCTTCEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred             HHHHhccCCCCCcCEEEECCch---HHHHHHHHHHHHhcCCCeEEEEecC
Confidence            2 2     15789999986532   2457889999999999999988654

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.44  E-value=6.5e-13  Score=114.77  Aligned_cols=159  Identities=12%  Similarity=0.071  Sum_probs=113.6

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      .+.+...+...+  .++.+|||||||+|-++..+....+..+|+++|+++.+++.+++++..+|+    +..+...|+..
T Consensus       119 lD~fY~~i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~----~~~~~v~D~~~  192 (281)
T 3lcv_B          119 LDEFYRELFRHL--PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV----PHRTNVADLLE  192 (281)
T ss_dssp             HHHHHHHHGGGS--CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC----CEEEEECCTTT
T ss_pred             HHHHHHHHHhcc--CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC----CceEEEeeecc
Confidence            334444444444  336799999999999999998887888999999999999999999988763    57888888866


Q ss_pred             CCCCCCCcceEEeccccccCCChH--HHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHH
Q 019957          231 LPFASGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDL  308 (333)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~l  308 (333)
                      -+ ..+.||+|++.-+++|+.+..  ..+ ++...|+++|+++-...-.-..-.+.+...+            .+.|+..
T Consensus       193 ~~-p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y------------~~~~e~~  258 (281)
T 3lcv_B          193 DR-LDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNY------------SQSFESQ  258 (281)
T ss_dssp             SC-CCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC-------CHHHHH------------HHHHHHH
T ss_pred             cC-CCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHH------------HHHHHHH
Confidence            54 357899999999999997653  344 8999999999988766421111111111111            3578899


Q ss_pred             HHhCCCcEEEEEEeCeEEEEEE
Q 019957          309 CTSCGLTNYTSKVQQSFIMFAA  330 (333)
Q Consensus       309 l~~aGf~~v~~~~~~~~~~~~a  330 (333)
                      +.+.|+.+-+ ...+.=++|+.
T Consensus       259 ~~~~g~~~~~-~~~~nEl~y~i  279 (281)
T 3lcv_B          259 ARERSCRIQR-LEIGNELIYVI  279 (281)
T ss_dssp             HHHHTCCEEE-EEETTEEEEEE
T ss_pred             HHhcCCceee-eeecCeeEEEe
Confidence            9999996665 44443344433

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.44  E-value=2.9e-12  Score=113.45  Aligned_cols=136  Identities=14%  Similarity=0.137  Sum_probs=106.1

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      ..+.+.+  .++.+|||+|||+|.++..+++.+ ..+|+++|+++.+++.++++++.+++  ..++.++.+|..+++. .
T Consensus       117 ~ri~~~~--~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v--~~~v~~~~~D~~~~~~-~  190 (278)
T 3k6r_A          117 VRMAKVA--KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKV--EDRMSAYNMDNRDFPG-E  190 (278)
T ss_dssp             HHHHHHC--CTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTC--TTTEEEECSCTTTCCC-C
T ss_pred             HHHHHhc--CCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEeCcHHHhcc-c
Confidence            3444444  358899999999999999999886 45899999999999999999999986  6789999999988763 5


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCc
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT  315 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~  315 (333)
                      +.||.|++...    +....+|..+.++||+||.+.+.+......                ......+.+++++++.|++
T Consensus       191 ~~~D~Vi~~~p----~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~----------------~~~~~~e~i~~~~~~~g~~  250 (278)
T 3k6r_A          191 NIADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEKL----------------MPREPFETFKRITKEYGYD  250 (278)
T ss_dssp             SCEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG----------------TTTTTHHHHHHHHHHTTCE
T ss_pred             cCCCEEEECCC----CcHHHHHHHHHHHcCCCCEEEEEeeecccc----------------cchhHHHHHHHHHHHcCCc
Confidence            68999987632    344567889999999999998766543211                1112346788889999997


Q ss_pred             EE
Q 019957          316 NY  317 (333)
Q Consensus       316 ~v  317 (333)
                      +.
T Consensus       251 v~  252 (278)
T 3k6r_A          251 VE  252 (278)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.43  E-value=3.7e-12  Score=107.55  Aligned_cols=89  Identities=15%  Similarity=0.185  Sum_probs=72.2

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (333)
                      ..++.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.++++.        .++.++++|+.+++   ++||+|++
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~--------~~~~~~~~d~~~~~---~~~D~v~~  116 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNC--------GGVNFMVADVSEIS---GKYDTWIM  116 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHC--------TTSEEEECCGGGCC---CCEEEEEE
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhc--------CCCEEEECcHHHCC---CCeeEEEE
Confidence            3457799999999999999999874 447999999999999999863        36899999998875   68999999


Q ss_pred             ccccccCCC--hHHHHHHHHHhc
Q 019957          244 GAALHCWPS--PSNAVAEISRIL  264 (333)
Q Consensus       244 ~~vl~h~~d--~~~~l~~~~r~L  264 (333)
                      +..++|+.+  ...+++++.+++
T Consensus       117 ~~p~~~~~~~~~~~~l~~~~~~~  139 (200)
T 1ne2_A          117 NPPFGSVVKHSDRAFIDKAFETS  139 (200)
T ss_dssp             CCCC-------CHHHHHHHHHHE
T ss_pred             CCCchhccCchhHHHHHHHHHhc
Confidence            999999865  347889999988

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.42  E-value=1e-12  Score=124.24  Aligned_cols=123  Identities=19%  Similarity=0.234  Sum_probs=101.1

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      .+.....+...+...++.+|||+|||+|..+..+++.++..+++++|+++.+++.+++++...++    ++.++.+|+..
T Consensus       231 qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~----~~~~~~~D~~~  306 (429)
T 1sqg_A          231 QDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM----KATVKQGDGRY  306 (429)
T ss_dssp             CCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC----CCEEEECCTTC
T ss_pred             eCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC----CeEEEeCchhh
Confidence            34445566677777888999999999999999999987667999999999999999999988763    47899999988


Q ss_pred             CC--CCCCCcceEEe------ccccccCCCh----------------HHHHHHHHHhccCCcEEEEEEecc
Q 019957          231 LP--FASGFVDAVHA------GAALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       231 lp--~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      ++  +.+++||+|++      .+++.+.++.                ..+|+++.++|||||++++++...
T Consensus       307 ~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~  377 (429)
T 1sqg_A          307 PSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  377 (429)
T ss_dssp             THHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             chhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            76  55678999996      3456665553                377999999999999999988544

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.42  E-value=1.9e-12  Score=117.63  Aligned_cols=108  Identities=13%  Similarity=0.144  Sum_probs=84.7

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CcCCCCCeEEEEccCCCC-CCCCCCcceEE
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRL-PFASGFVDAVH  242 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~l-p~~~~~fD~V~  242 (333)
                      .+.+|||||||+|.++..+++..+..+++++|+|+.+++.|++++...  ++ ..++++++.+|+.+. +..+++||+|+
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~-~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGY-EDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGG-GSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc-CCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            457999999999999999998755679999999999999999987651  11 135899999998652 32357899999


Q ss_pred             eccccccCC---C--hHHHHHHHHHhccCCcEEEEEEe
Q 019957          243 AGAALHCWP---S--PSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       243 ~~~vl~h~~---d--~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      +... +++.   +  ...+++++.++|||||++++...
T Consensus       195 ~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  231 (321)
T 2pt6_A          195 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  231 (321)
T ss_dssp             EECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            8643 2221   1  16889999999999999999764

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.40  E-value=1.9e-12  Score=123.48  Aligned_cols=120  Identities=18%  Similarity=0.171  Sum_probs=95.8

Q ss_pred             HHHHHhhccc--CCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957          156 KMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (333)
Q Consensus       156 ~~~~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (333)
                      ..+...+...  ++.+|||+|||+|..+..+++... ...|+++|+++.+++.++++++..|   ..++.++.+|+..++
T Consensus       105 ~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g---~~nv~~~~~D~~~~~  181 (479)
T 2frx_A          105 MLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCG---ISNVALTHFDGRVFG  181 (479)
T ss_dssp             HHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT---CCSEEEECCCSTTHH
T ss_pred             HHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCCHHHhh
Confidence            3444556666  788999999999999999998742 4699999999999999999998877   457999999998875


Q ss_pred             C-CCCCcceEEec------cccccCCC----------------hHHHHHHHHHhccCCcEEEEEEeccc
Q 019957          233 F-ASGFVDAVHAG------AALHCWPS----------------PSNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       233 ~-~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      . .+++||+|++.      +++.+.++                ...+|+++.++|||||+|++++....
T Consensus       182 ~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~  250 (479)
T 2frx_A          182 AAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN  250 (479)
T ss_dssp             HHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred             hhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence            3 45789999972      34444333                23679999999999999999886554

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.38  E-value=4.3e-12  Score=108.70  Aligned_cols=102  Identities=14%  Similarity=0.113  Sum_probs=82.6

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++.+|||||||+|.++..+.   +...|+|+|+++.+++.+++.+...+    .+..+..+|+...+.+ ++||+|++.
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g----~~~~~~v~D~~~~~~~-~~~DvvLll  175 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKD----WDFTFALQDVLCAPPA-EAGDLALIF  175 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTT----CEEEEEECCTTTSCCC-CBCSEEEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcC----CCceEEEeecccCCCC-CCcchHHHH
Confidence            456799999999999998877   46699999999999999999987754    4788999999877654 489999999


Q ss_pred             cccccCCCh-HHHHHHHHHhccCCcEEEEEE
Q 019957          245 AALHCWPSP-SNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       245 ~vl~h~~d~-~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      -++||+.+. ...+-++...|+++|+++-..
T Consensus       176 k~lh~LE~q~~~~~~~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          176 KLLPLLEREQAGSAMALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             SCHHHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred             HHHHHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence            888887543 223348888999997776654

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.38  E-value=6.3e-13  Score=125.84  Aligned_cols=118  Identities=17%  Similarity=0.167  Sum_probs=95.0

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-C
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F  233 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~  233 (333)
                      ..+...+...++.+|||+|||+|..+..+++..+ ...|+++|+++.+++.++++++..|+   . +.++.+|+..++ +
T Consensus        91 ~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~---~-v~~~~~Da~~l~~~  166 (464)
T 3m6w_A           91 QAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA---P-LAVTQAPPRALAEA  166 (464)
T ss_dssp             HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC---C-CEEECSCHHHHHHH
T ss_pred             HHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---e-EEEEECCHHHhhhh
Confidence            4455566777889999999999999999998753 36899999999999999999998874   4 899999987765 2


Q ss_pred             CCCCcceEEe------ccccccCCCh----------------HHHHHHHHHhccCCcEEEEEEecc
Q 019957          234 ASGFVDAVHA------GAALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       234 ~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      .+++||+|++      ..++.+.++.                ..+|+++.++|||||+|+++|...
T Consensus       167 ~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~  232 (464)
T 3m6w_A          167 FGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF  232 (464)
T ss_dssp             HCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             ccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            4678999995      3344443433                578999999999999999988654

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.38  E-value=3.6e-12  Score=113.71  Aligned_cols=107  Identities=13%  Similarity=0.127  Sum_probs=83.5

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CcC------CCCCeEEEEccCCCC-CCCC
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTI------LTSNLALVRADVCRL-PFAS  235 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~------~~~~i~~~~~d~~~l-p~~~  235 (333)
                      ..+.+|||||||+|.++..+++. +..+++++|+++.+++.|++++ ..  ++.      ..+++.++.+|+.+. +. +
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~  150 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-N  150 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-C
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-c
Confidence            34679999999999999999988 5679999999999999999987 32  110      146899999998552 22 5


Q ss_pred             CCcceEEeccccccCCC-----hHHHHHHHHHhccCCcEEEEEEe
Q 019957          236 GFVDAVHAGAALHCWPS-----PSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d-----~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ++||+|++.... ++..     ...+++++.++|+|||++++...
T Consensus       151 ~~fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  194 (281)
T 1mjf_A          151 RGFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG  194 (281)
T ss_dssp             CCEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCeeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            789999986543 2211     25789999999999999999764

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.38  E-value=4.2e-12  Score=113.32  Aligned_cols=110  Identities=14%  Similarity=0.156  Sum_probs=85.7

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc-CCCCCeEEEEccCCCC-CCCCCCcceEEe
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-ILTSNLALVRADVCRL-PFASGFVDAVHA  243 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-~~~~~i~~~~~d~~~l-p~~~~~fD~V~~  243 (333)
                      ++.+|||||||+|.++..+++..+..+++++|+++.+++.+++++...+. ...+++.++.+|+.+. +..+++||+|++
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  157 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  157 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence            46799999999999999999876667999999999999999998764210 0146899999998653 223578999998


Q ss_pred             ccccccCCCh----HHHHHHHHHhccCCcEEEEEEe
Q 019957          244 GAALHCWPSP----SNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       244 ~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ....++.+..    ..+++++.++|||||++++...
T Consensus       158 d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          158 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  193 (283)
T ss_dssp             ECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             cCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence            5443222211    5889999999999999998754

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.37  E-value=2.3e-12  Score=116.49  Aligned_cols=107  Identities=13%  Similarity=0.132  Sum_probs=82.3

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CcCCCCCeEEEEccCCC-CCCCCCCcceEE
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCR-LPFASGFVDAVH  242 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~-lp~~~~~fD~V~  242 (333)
                      .+.+|||||||+|.++..+++..+..+++++|+++.+++.|++++...  ++ ..+++.++.+|+.+ ++..+++||+|+
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~-~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGF-SHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGG-GCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhcccc-CCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            457999999999999999998766679999999999999999987643  21 14689999999865 333467899999


Q ss_pred             eccccccCCCh-----HHHHHHHHHhccCCcEEEEEE
Q 019957          243 AGAALHCWPSP-----SNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       243 ~~~vl~h~~d~-----~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      +... +++...     ..+++++.++|+|||++++..
T Consensus       187 ~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          187 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             ECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            8553 333211     578999999999999999875

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.37  E-value=1.3e-12  Score=109.75  Aligned_cols=100  Identities=17%  Similarity=0.191  Sum_probs=76.5

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHhCCC---------CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEE-EccCCCCC-
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKSGTY---------SGVVALDFSENMLRQCYDFIKQDNTILTSNLALV-RADVCRLP-  232 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---------~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~-~~d~~~lp-  232 (333)
                      ..++.+|||+|||+|.++..+++..+.         .+++|+|+++..           .   ..++.++ .+|+...+ 
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~---~~~~~~~~~~d~~~~~~   85 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------P---LEGATFLCPADVTDPRT   85 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------C---CTTCEEECSCCTTSHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------c---CCCCeEEEeccCCCHHH
Confidence            346789999999999999999998533         689999999831           1   3467888 88886643 


Q ss_pred             -------CCCCCcceEEecccccc----CCCh-------HHHHHHHHHhccCCcEEEEEEecc
Q 019957          233 -------FASGFVDAVHAGAALHC----WPSP-------SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       233 -------~~~~~fD~V~~~~vl~h----~~d~-------~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                             +++++||+|++...++.    ..+.       ..+++++.++|||||.+++.++..
T Consensus        86 ~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  148 (196)
T 2nyu_A           86 SQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG  148 (196)
T ss_dssp             HHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             HHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence                   33568999999665443    2333       478999999999999999987543

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.37  E-value=7.9e-13  Score=125.00  Aligned_cols=119  Identities=16%  Similarity=0.155  Sum_probs=93.6

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-C
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-F  233 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~  233 (333)
                      ..+...+...++.+|||+|||+|..+..++... ....|+++|+++.+++.++++++..|   ..++.++.+|+..++ .
T Consensus        95 ~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g---~~nv~v~~~Da~~l~~~  171 (456)
T 3m4x_A           95 MIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWG---VSNAIVTNHAPAELVPH  171 (456)
T ss_dssp             HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT---CSSEEEECCCHHHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCceEEEeCCHHHhhhh
Confidence            445556677788999999999999999998763 24689999999999999999999887   457999999987764 2


Q ss_pred             CCCCcceEEecc------ccccCCCh----------------HHHHHHHHHhccCCcEEEEEEecc
Q 019957          234 ASGFVDAVHAGA------ALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       234 ~~~~fD~V~~~~------vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      .+++||+|++..      ++.+-++.                ..+|+++.++|||||+|+.+|...
T Consensus       172 ~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  237 (456)
T 3m4x_A          172 FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF  237 (456)
T ss_dssp             HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence            357899999732      33322111                267999999999999999988544

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.36  E-value=2.1e-12  Score=120.31  Aligned_cols=110  Identities=16%  Similarity=0.146  Sum_probs=86.0

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCC-CeEEEEccCCCC-CC---CCCCcc
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS-NLALVRADVCRL-PF---ASGFVD  239 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~-~i~~~~~d~~~l-p~---~~~~fD  239 (333)
                      .++.+|||+|||+|.++..++..+ ..+|+|+|+|+.+++.|+++++.+++  .. ++.++++|+.+. +.   ...+||
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~--~~~~v~~~~~D~~~~l~~~~~~~~~fD  287 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHL--DMANHQLVVMDVFDYFKYARRHHLTYD  287 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTC--CCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCC--CccceEEEECCHHHHHHHHHHhCCCcc
Confidence            357799999999999999999865 34899999999999999999998874  33 899999998663 21   245899


Q ss_pred             eEEecccc-----ccCCCh----HHHHHHHHHhccCCcEEEEEEecc
Q 019957          240 AVHAGAAL-----HCWPSP----SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       240 ~V~~~~vl-----~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      +|++.-..     .+..+.    ..+++++.++|+|||.+++.....
T Consensus       288 ~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~  334 (385)
T 2b78_A          288 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  334 (385)
T ss_dssp             EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            99984332     233333    356778899999999999987544

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.36  E-value=1.9e-12  Score=118.00  Aligned_cols=109  Identities=17%  Similarity=0.188  Sum_probs=85.4

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CcCCCCCeEEEEccCCCC-C-CCCCCcce
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRL-P-FASGFVDA  240 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~l-p-~~~~~fD~  240 (333)
                      ..+.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++...  ++ ..+++.++.+|+.+. + +.+++||+
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl-~~~rv~~~~~D~~~~l~~~~~~~fDl  197 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY-EDPRVNLVIGDGVAFLKNAAEGSYDA  197 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG-GSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcccc-CCCcEEEEECCHHHHHHhccCCCccE
Confidence            3467999999999999999998766679999999999999999987642  21 146899999998653 2 33578999


Q ss_pred             EEecccc--ccCCC--hHHHHHHHHHhccCCcEEEEEE
Q 019957          241 VHAGAAL--HCWPS--PSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       241 V~~~~vl--~h~~d--~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      |++....  ++..+  ...+++++.++|||||+|++..
T Consensus       198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            9985432  11111  3688999999999999999964

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.36  E-value=8.3e-12  Score=114.57  Aligned_cols=145  Identities=11%  Similarity=0.082  Sum_probs=107.8

Q ss_pred             CCCcHHHHHHHHHhh----cccCCCeEEEEcCCcCHHHHHHHHhCCC-----CeEEEEeCCHHHHHHHHHHHHhcCcCCC
Q 019957          148 FPGPDEEFKMAQEYF----KSAQGGLLVDVSCGSGLFSRKFAKSGTY-----SGVVALDFSENMLRQCYDFIKQDNTILT  218 (333)
Q Consensus       148 ~~~~~~~~~~~~~~l----~~~~~~~vLDiGcG~G~~~~~l~~~~~~-----~~v~g~D~s~~~~~~a~~~~~~~~~~~~  218 (333)
                      ++.+......+...+    .+.++.+|||+|||+|.++..+.+..+.     .+++|+|+++.+++.|+.++...++   
T Consensus       108 ~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~---  184 (344)
T 2f8l_A          108 QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ---  184 (344)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC---
T ss_pred             CCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC---
Confidence            566766655544443    3345679999999999999988877532     5899999999999999998877652   


Q ss_pred             CCeEEEEccCCCCCCCCCCcceEEeccccccCCChH------------------HHHHHHHHhccCCcEEEEEEecccCC
Q 019957          219 SNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS------------------NAVAEISRILRSGGVFVGTTFLRYTS  280 (333)
Q Consensus       219 ~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~------------------~~l~~~~r~LkpgG~l~i~~~~~~~~  280 (333)
                       ++.++.+|..... ..++||+|+++-.+.++++..                  .++..+.+.|||||++++.+++... 
T Consensus       185 -~~~i~~~D~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~-  261 (344)
T 2f8l_A          185 -KMTLLHQDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMF-  261 (344)
T ss_dssp             -CCEEEESCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGG-
T ss_pred             -CceEEECCCCCcc-ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhc-
Confidence             6889999986633 357899999987766654332                  5799999999999999999875420 


Q ss_pred             CcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCc
Q 019957          281 STSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT  315 (333)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~  315 (333)
                                       ..-...++++.+.+.|+.
T Consensus       262 -----------------~~~~~~~ir~~l~~~~~~  279 (344)
T 2f8l_A          262 -----------------GTSDFAKVDKFIKKNGHI  279 (344)
T ss_dssp             -----------------GSTTHHHHHHHHHHHEEE
T ss_pred             -----------------CCchHHHHHHHHHhCCeE
Confidence                             001236777777777763

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.36  E-value=5e-12  Score=106.24  Aligned_cols=98  Identities=16%  Similarity=0.279  Sum_probs=74.8

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC-------C-
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-------S-  235 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-------~-  235 (333)
                      ..++.+|||+|||+|.++..+++.  ..+|+|+|+++..           .   ..++.++++|+.+.+..       . 
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-----------~---~~~v~~~~~D~~~~~~~~~~~~~~~~   86 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-----------E---IAGVRFIRCDIFKETIFDDIDRALRE   86 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-----------C---CTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-----------c---CCCeEEEEccccCHHHHHHHHHHhhc
Confidence            356789999999999999999988  4499999998741           1   45899999999876521       1 


Q ss_pred             ---CCcceEEeccccccCC----C-------hHHHHHHHHHhccCCcEEEEEEecc
Q 019957          236 ---GFVDAVHAGAALHCWP----S-------PSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       236 ---~~fD~V~~~~vl~h~~----d-------~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                         ++||+|++........    |       ...+++.+.++|||||.|++..+..
T Consensus        87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~  142 (191)
T 3dou_A           87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG  142 (191)
T ss_dssp             HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC
Confidence               4899999965432211    1       2467889999999999999877543

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.34  E-value=2.3e-12  Score=116.16  Aligned_cols=111  Identities=15%  Similarity=0.152  Sum_probs=85.1

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh--cCcCCCCCeEEEEccCCC-CCCCCCCcceE
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ--DNTILTSNLALVRADVCR-LPFASGFVDAV  241 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~~~~~~~i~~~~~d~~~-lp~~~~~fD~V  241 (333)
                      ..+.+|||||||+|.++..+++..+..+++++|+++.+++.|++++..  .++ ..++++++.+|+.+ ++..+++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~-~~~rv~v~~~Da~~~l~~~~~~fD~I  172 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY-SSSKLTLHVGDGFEFMKQNQDAFDVI  172 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG-GCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhccc-CCCcEEEEECcHHHHHhhCCCCceEE
Confidence            346799999999999999999886667999999999999999998764  221 14689999999865 33346789999


Q ss_pred             EeccccccCC----ChHHHHHHHHHhccCCcEEEEEEec
Q 019957          242 HAGAALHCWP----SPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       242 ~~~~vl~h~~----d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ++....+..+    ....+++++.++|||||++++....
T Consensus       173 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  211 (304)
T 2o07_A          173 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  211 (304)
T ss_dssp             EEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence            9865432211    1246899999999999999997643

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.34  E-value=9.1e-12  Score=116.51  Aligned_cols=110  Identities=16%  Similarity=0.182  Sum_probs=88.9

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCC-CeEEEEccCCCCCC----CCCCcc
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS-NLALVRADVCRLPF----ASGFVD  239 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~-~i~~~~~d~~~lp~----~~~~fD  239 (333)
                      .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++++..+++  .. ++.++.+|+.+...    ..++||
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl--~~~~v~~~~~D~~~~~~~~~~~~~~fD  295 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKL--DLSKAEFVRDDVFKLLRTYRDRGEKFD  295 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTC--CGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCC--CccceEEEECCHHHHHHHHHhcCCCCC
Confidence            457799999999999999999986 45899999999999999999988762  03 79999999876421    146899


Q ss_pred             eEEecc---------ccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          240 AVHAGA---------ALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       240 ~V~~~~---------vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      +|++.-         +.++..+...++.++.++|+|||++++.+...
T Consensus       296 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  342 (396)
T 3c0k_A          296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG  342 (396)
T ss_dssp             EEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            999863         23333556788999999999999999987543

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.34  E-value=1.1e-11  Score=109.27  Aligned_cols=99  Identities=12%  Similarity=0.069  Sum_probs=82.4

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRLPFASGFVDAVHA  243 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (333)
                      .+.+|||||||+|.++..+.+. + .+++++|+++.+++.|++++...  ++ ..+++.++.+|..+..   ++||+|++
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~-~~~rv~~~~~D~~~~~---~~fD~Ii~  145 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVK-NNKNFTHAKQLLDLDI---KKYDLIFC  145 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHH-TCTTEEEESSGGGSCC---CCEEEEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhcccc-CCCeEEEEechHHHHH---hhCCEEEE
Confidence            4579999999999999999887 5 79999999999999998875431  11 1468999999997764   68999998


Q ss_pred             ccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       244 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      .     ..+|..+++++.++|||||++++...
T Consensus       146 d-----~~dp~~~~~~~~~~L~pgG~lv~~~~  172 (262)
T 2cmg_A          146 L-----QEPDIHRIDGLKRMLKEDGVFISVAK  172 (262)
T ss_dssp             S-----SCCCHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             C-----CCChHHHHHHHHHhcCCCcEEEEEcC
Confidence            6     35778899999999999999999653

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.34  E-value=5.8e-13  Score=118.28  Aligned_cols=104  Identities=20%  Similarity=0.215  Sum_probs=77.3

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH-hcCcCCCCCeEEE--EccCCCCCCCCCCcce
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK-QDNTILTSNLALV--RADVCRLPFASGFVDA  240 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~~~~~~~i~~~--~~d~~~lp~~~~~fD~  240 (333)
                      ..++.+|||+|||+|.++..+++.   .+|+|+|+++ ++..++++.. ....  ..++.++  ++|+..++  +++||+
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~--~~~v~~~~~~~D~~~l~--~~~fD~  151 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETF--GWNLITFKSKVDVTKME--PFQADT  151 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCT--TGGGEEEECSCCGGGCC--CCCCSE
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhc--CCCeEEEeccCcHhhCC--CCCcCE
Confidence            346789999999999999999987   3899999998 5433322100 0000  1168899  89998877  679999


Q ss_pred             EEeccccccCCChH-------HHHHHHHHhccCCc--EEEEEEec
Q 019957          241 VHAGAALHCWPSPS-------NAVAEISRILRSGG--VFVGTTFL  276 (333)
Q Consensus       241 V~~~~vl~h~~d~~-------~~l~~~~r~LkpgG--~l~i~~~~  276 (333)
                      |++..+ ++..++.       .+|+++.++|||||  .|++.++.
T Consensus       152 Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          152 VLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             EEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             EEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            999877 5554431       37899999999999  99987655

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.33  E-value=7.8e-13  Score=116.80  Aligned_cols=104  Identities=18%  Similarity=0.185  Sum_probs=77.1

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHH-HhcCcCCCCCeEEE--EccCCCCCCCCCCcce
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI-KQDNTILTSNLALV--RADVCRLPFASGFVDA  240 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~-~~~~~~~~~~i~~~--~~d~~~lp~~~~~fD~  240 (333)
                      ..++.+|||+|||+|.++..+++.   .+|+|+|+++ ++..+++.. .....  ..++.++  ++|+..++  +++||+
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~~--~~~v~~~~~~~D~~~l~--~~~fD~  143 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITESY--GWNIVKFKSRVDIHTLP--VERTDV  143 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCBT--TGGGEEEECSCCTTTSC--CCCCSE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhcc--CCCeEEEecccCHhHCC--CCCCcE
Confidence            346789999999999999999887   3899999998 532222110 00000  1168888  89998876  679999


Q ss_pred             EEeccccccCCChH-------HHHHHHHHhccCCc--EEEEEEec
Q 019957          241 VHAGAALHCWPSPS-------NAVAEISRILRSGG--VFVGTTFL  276 (333)
Q Consensus       241 V~~~~vl~h~~d~~-------~~l~~~~r~LkpgG--~l~i~~~~  276 (333)
                      |++..+ ++..++.       .+|+++.++|||||  .|++.++.
T Consensus       144 V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          144 IMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             EEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             EEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            999877 5554431       37899999999999  99997755

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.32  E-value=4e-12  Score=118.97  Aligned_cols=109  Identities=16%  Similarity=0.147  Sum_probs=88.5

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC----CCCCcceE
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDAV  241 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~V  241 (333)
                      ++.+|||+|||+|.++..+++.+ ..+|+|+|+++.+++.+++++..+++  ..++.++.+|+.+...    ..++||+|
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g-~~~v~~vD~s~~~l~~a~~n~~~n~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~V  293 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNGV--EDRMKFIVGSAFEEMEKLQKKGEKFDIV  293 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCC--CccceEEECCHHHHHHHHHhhCCCCCEE
Confidence            57899999999999999999874 45899999999999999999988774  3389999999876531    25689999


Q ss_pred             Eeccc---------cccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          242 HAGAA---------LHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       242 ~~~~v---------l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      ++.-.         .++..+...++.++.++|+|||.+++.+...
T Consensus       294 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          294 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence            98532         2222445678999999999999999988654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.31  E-value=5.4e-12  Score=117.47  Aligned_cols=107  Identities=20%  Similarity=0.272  Sum_probs=86.3

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC----CCCCcceE
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDAV  241 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~V  241 (333)
                      ++.+|||+|||+|.++..++..  ..+|+|+|+|+.+++.|++++..++   ..++.++.+|+.+...    .+++||+|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~---~~~~~~~~~d~~~~~~~~~~~~~~fD~I  283 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNG---LGNVRVLEANAFDLLRRLEKEGERFDLV  283 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTT---CTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcC---CCCceEEECCHHHHHHHHHhcCCCeeEE
Confidence            5679999999999999999987  3489999999999999999999887   3459999999876531    15689999


Q ss_pred             Eecccc---------ccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          242 HAGAAL---------HCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       242 ~~~~vl---------~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      ++.-..         .+..+...++.++.++|+|||.+++.+...
T Consensus       284 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  328 (382)
T 1wxx_A          284 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  328 (382)
T ss_dssp             EECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            984321         112334578999999999999999988654

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.31  E-value=1.7e-12  Score=113.47  Aligned_cols=115  Identities=9%  Similarity=0.144  Sum_probs=85.4

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      .....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.+++++..     ..++.++.+|+.+
T Consensus        15 d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~   87 (244)
T 1qam_A           15 SKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVD-----HDNFQVLNKDILQ   87 (244)
T ss_dssp             CHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTT-----CCSEEEECCCGGG
T ss_pred             CHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCC--eEEEEECCHHHHHHHHHhhcc-----CCCeEEEEChHHh
Confidence            345567777777777788999999999999999999874  999999999999999988654     3589999999999


Q ss_pred             CCCCC-CCcceEEe----------ccccccCCChHHHH----HHHHHhccCCcEEEE
Q 019957          231 LPFAS-GFVDAVHA----------GAALHCWPSPSNAV----AEISRILRSGGVFVG  272 (333)
Q Consensus       231 lp~~~-~~fD~V~~----------~~vl~h~~d~~~~l----~~~~r~LkpgG~l~i  272 (333)
                      +++++ ..|++|..          ...++|...+..++    +.+.|+++++|.+.+
T Consensus        88 ~~~~~~~~~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~v  144 (244)
T 1qam_A           88 FKFPKNQSYKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLAL  144 (244)
T ss_dssp             CCCCSSCCCEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHHH
T ss_pred             CCcccCCCeEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchhH
Confidence            88764 45643321          23344444444444    447888888886433

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.27  E-value=7.2e-11  Score=111.60  Aligned_cols=112  Identities=16%  Similarity=0.222  Sum_probs=85.7

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC---
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---  230 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~---  230 (333)
                      ..+.+.+.+...++.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.|++++..++   ..++.++.+|+.+   
T Consensus       274 l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~--~~V~gvD~s~~al~~A~~n~~~~~---~~~v~f~~~d~~~~l~  348 (433)
T 1uwv_A          274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNG---LQNVTFYHENLEEDVT  348 (433)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCTTSCCS
T ss_pred             HHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHcC---CCceEEEECCHHHHhh
Confidence            34555566666667899999999999999999884  499999999999999999998877   4589999999977   


Q ss_pred             -CCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          231 -LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       231 -lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                       +++.+++||+|++.---...   ..+++.+.+ ++|+++++++.
T Consensus       349 ~~~~~~~~fD~Vv~dPPr~g~---~~~~~~l~~-~~p~~ivyvsc  389 (433)
T 1uwv_A          349 KQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVSC  389 (433)
T ss_dssp             SSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEES
T ss_pred             hhhhhcCCCCEEEECCCCccH---HHHHHHHHh-cCCCeEEEEEC
Confidence             34556789999984322111   244555543 68988888754

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.26  E-value=1.5e-11  Score=122.68  Aligned_cols=108  Identities=18%  Similarity=0.214  Sum_probs=89.2

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCC-CCeEEEEccCCC-CCCCCCCcceEEe
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT-SNLALVRADVCR-LPFASGFVDAVHA  243 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~-~~i~~~~~d~~~-lp~~~~~fD~V~~  243 (333)
                      ++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.+++++..+++  . .++.++++|+.+ ++...++||+|++
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl--~~~~v~~i~~D~~~~l~~~~~~fD~Ii~  615 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGL--TGRAHRLIQADCLAWLREANEQFDLIFI  615 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTC--CSTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCC--CccceEEEecCHHHHHHhcCCCccEEEE
Confidence            57899999999999999998866 34799999999999999999998875  3 479999999976 3444678999998


Q ss_pred             cc-----------ccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          244 GA-----------ALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       244 ~~-----------vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      .-           ++++..+...+++.+.++|+|||+|++.+..
T Consensus       616 DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          616 DPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             CCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            43           2333445567899999999999999987754

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.25  E-value=5e-11  Score=110.97  Aligned_cols=106  Identities=16%  Similarity=0.073  Sum_probs=82.5

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-CCCCCCcceEEec
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAVHAG  244 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~~  244 (333)
                      ++.+|||+|||+|.++..++..+.  .|+++|+|+.+++.++++++.+++  .  ..+.++|+.+. +...+.||+|++.
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng~--~--~~~~~~D~~~~l~~~~~~fD~Ii~d  287 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLGL--R--VDIRHGEALPTLRGLEGPFHHVLLD  287 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTC--C--CEEEESCHHHHHHTCCCCEEEEEEC
T ss_pred             CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhCC--C--CcEEEccHHHHHHHhcCCCCEEEEC
Confidence            478999999999999999999875  699999999999999999988874  2  35668888663 2213349999985


Q ss_pred             ccccc---------CCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          245 AALHC---------WPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       245 ~vl~h---------~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      -...+         ..+...+++.+.++|||||.|++.+...
T Consensus       288 pP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~  329 (393)
T 4dmg_A          288 PPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY  329 (393)
T ss_dssp             CCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            43211         1233578899999999999999877554

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.24  E-value=4.1e-11  Score=113.70  Aligned_cols=147  Identities=15%  Similarity=0.130  Sum_probs=110.1

Q ss_pred             cchhHHHHhhHHhhc-----ccCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-------------CC
Q 019957          129 PFVSFLYERGWRQNF-----NRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-------------TY  190 (333)
Q Consensus       129 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-------------~~  190 (333)
                      ..++..|+....+..     ....++.+....+.+.+.+.+.++.+|||+|||+|.++..+.+..             ..
T Consensus       129 d~~G~~yE~ll~~~~~~~~~~~G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~  208 (445)
T 2okc_A          129 DVKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRD  208 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCTTTCCGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccccCCcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcC
Confidence            344555665544422     122467888889999999888778899999999999998887642             13


Q ss_pred             CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccccCCC-----------------h
Q 019957          191 SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPS-----------------P  253 (333)
Q Consensus       191 ~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d-----------------~  253 (333)
                      ..++|+|+++.+++.|+.++...|+. ..++.+.++|....+.. .+||+|+++-.+.+...                 .
T Consensus       209 ~~i~G~Ei~~~~~~lA~~nl~l~g~~-~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~  286 (445)
T 2okc_A          209 KALHGVDNTPLVVTLASMNLYLHGIG-TDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQ  286 (445)
T ss_dssp             TTEEEEESCHHHHHHHHHHHHHTTCC-SSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHH
T ss_pred             eEEEEEeCCHHHHHHHHHHHHHhCCC-cCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchH
Confidence            47999999999999999988776631 11677899998776543 48999999866554321                 1


Q ss_pred             HHHHHHHHHhccCCcEEEEEEecc
Q 019957          254 SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       254 ~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      ..+++.+.++|||||++.+..+..
T Consensus       287 ~~fl~~~~~~Lk~gG~~a~V~p~~  310 (445)
T 2okc_A          287 LNFLQHMMLMLKTGGRAAVVLPDN  310 (445)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             HHHHHHHHHHhccCCEEEEEECCc
Confidence            378999999999999999988753

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.23  E-value=9.1e-11  Score=110.40  Aligned_cols=118  Identities=18%  Similarity=0.211  Sum_probs=90.9

Q ss_pred             CCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE
Q 019957          147 GFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR  225 (333)
Q Consensus       147 ~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~  225 (333)
                      .++.+....+.+.+.+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.|            .++.+++
T Consensus        20 ~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------------~~~~~~~   87 (421)
T 2ih2_A           20 RVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------PWAEGIL   87 (421)
T ss_dssp             -CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------TTEEEEE
T ss_pred             eEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------------CCCcEEe
Confidence            356677888888888876556799999999999999998863 456999999999987655            2688999


Q ss_pred             ccCCCCCCCCCCcceEEeccccc----------cCCCh-------------------HHHHHHHHHhccCCcEEEEEEec
Q 019957          226 ADVCRLPFASGFVDAVHAGAALH----------CWPSP-------------------SNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       226 ~d~~~lp~~~~~fD~V~~~~vl~----------h~~d~-------------------~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      +|+...+. .++||+|+++--..          |+.+.                   ..+++.+.++|+|||.+++..+.
T Consensus        88 ~D~~~~~~-~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~  166 (421)
T 2ih2_A           88 ADFLLWEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA  166 (421)
T ss_dssp             SCGGGCCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             CChhhcCc-cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence            99987653 46899999952221          12111                   15688999999999999999876


Q ss_pred             c
Q 019957          277 R  277 (333)
Q Consensus       277 ~  277 (333)
                      .
T Consensus       167 ~  167 (421)
T 2ih2_A          167 T  167 (421)
T ss_dssp             G
T ss_pred             H
Confidence            4

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.22  E-value=5.4e-11  Score=106.97  Aligned_cols=110  Identities=17%  Similarity=0.265  Sum_probs=81.4

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      .....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.+++++...+   ..++.++.+|+..
T Consensus        27 ~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~--~v~~vDi~~~~~~~a~~~~~~~~---~~~v~~~~~D~~~  101 (299)
T 2h1r_A           27 NPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAK--KVITIDIDSRMISEVKKRCLYEG---YNNLEVYEGDAIK  101 (299)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSS--EEEEECSCHHHHHHHHHHHHHTT---CCCEEC----CCS
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC---CCceEEEECchhh
Confidence            344556777777777788999999999999999998754  99999999999999999887655   4689999999988


Q ss_pred             CCCCCCCcceEEeccccccCCChH--HHH---------------HHHHHhccCCc
Q 019957          231 LPFASGFVDAVHAGAALHCWPSPS--NAV---------------AEISRILRSGG  268 (333)
Q Consensus       231 lp~~~~~fD~V~~~~vl~h~~d~~--~~l---------------~~~~r~LkpgG  268 (333)
                      +++.  +||+|+++...+ +..+.  ..+               +.+.|+++++|
T Consensus       102 ~~~~--~~D~Vv~n~py~-~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G  153 (299)
T 2h1r_A          102 TVFP--KFDVCTANIPYK-ISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG  153 (299)
T ss_dssp             SCCC--CCSEEEEECCGG-GHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred             CCcc--cCCEEEEcCCcc-cccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence            8754  899999864433 22221  222               44678888877

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.21  E-value=8.5e-14  Score=121.78  Aligned_cols=113  Identities=11%  Similarity=0.167  Sum_probs=87.6

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      ..+.+.+.+...++.+|||||||+|.++..+++.+  .+++|+|+|+.+++.++++...     ..++.++.+|+.++++
T Consensus        17 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~~~~   89 (245)
T 1yub_A           17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKL-----NTRVTLIHQDILQFQF   89 (245)
T ss_dssp             THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTT-----CSEEEECCSCCTTTTC
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhcc-----CCceEEEECChhhcCc
Confidence            44666667776678899999999999999999987  4999999999999888876542     4579999999999887


Q ss_pred             CC-CCcceEEec-----------cccccCCChHHHH----HHHHHhccCCcEEEEEE
Q 019957          234 AS-GFVDAVHAG-----------AALHCWPSPSNAV----AEISRILRSGGVFVGTT  274 (333)
Q Consensus       234 ~~-~~fD~V~~~-----------~vl~h~~d~~~~l----~~~~r~LkpgG~l~i~~  274 (333)
                      .+ ++| .|+++           .+++|..++...+    +.+.++|+|||.+++..
T Consensus        90 ~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A           90 PNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             CCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             ccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            63 678 55554           2234444555556    77999999999887654

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.21  E-value=7.9e-11  Score=107.66  Aligned_cols=101  Identities=19%  Similarity=0.195  Sum_probs=84.8

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++.+|||+|||+|.++.. ++ + ..+|+++|+|+.+++.+++++..+++  ..++.++.+|+.+..   ++||+|++.
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~-~-~~~V~~vD~s~~ai~~a~~n~~~n~l--~~~v~~~~~D~~~~~---~~fD~Vi~d  265 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK-N-AKKIYAIDINPHAIELLKKNIKLNKL--EHKIIPILSDVREVD---VKGNRVIMN  265 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT-T-SSEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCGGGCC---CCEEEEEEC
T ss_pred             CCCCEEEEccCccCHHHHh-cc-C-CCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEECChHHhc---CCCcEEEEC
Confidence            3578999999999999999 76 3 56999999999999999999998874  468999999998875   789999985


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      -.-    ....+++.+.++|+|||.+++.+...
T Consensus       266 pP~----~~~~~l~~~~~~L~~gG~l~~~~~~~  294 (336)
T 2yx1_A          266 LPK----FAHKFIDKALDIVEEGGVIHYYTIGK  294 (336)
T ss_dssp             CTT----TGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred             CcH----hHHHHHHHHHHHcCCCCEEEEEEeec
Confidence            321    12377999999999999999988654

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.21  E-value=4.2e-11  Score=106.65  Aligned_cols=117  Identities=12%  Similarity=-0.026  Sum_probs=84.4

Q ss_pred             cccCCCeEEEEcCCc------CHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEE-EEccCCCCCCC
Q 019957          163 KSAQGGLLVDVSCGS------GLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLAL-VRADVCRLPFA  234 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~------G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~-~~~d~~~lp~~  234 (333)
                      ...++.+|||+|||+      |.  ..+++..+ ..+|+|+|+++. +               .++.+ +++|+.++++.
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v---------------~~v~~~i~gD~~~~~~~  121 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V---------------SDADSTLIGDCATVHTA  121 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B---------------CSSSEEEESCGGGCCCS
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C---------------CCCEEEEECccccCCcc
Confidence            345678999999944      66  44444433 569999999987 1               14678 99999887764


Q ss_pred             CCCcceEEecccccc--------C---CChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHH
Q 019957          235 SGFVDAVHAGAALHC--------W---PSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEE  303 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h--------~---~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  303 (333)
                       ++||+|++....+.        .   .....+++++.++|||||.|++.++...                      ..+
T Consensus       122 -~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~----------------------~~~  178 (290)
T 2xyq_A          122 -NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS----------------------WNA  178 (290)
T ss_dssp             -SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS----------------------CCH
T ss_pred             -CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC----------------------CHH
Confidence             68999999643221        1   1124789999999999999999764321                      224


Q ss_pred             HHHHHHHhCCCcEEEEE
Q 019957          304 EIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       304 ~l~~ll~~aGf~~v~~~  320 (333)
                      ++.+++++.||..++..
T Consensus       179 ~l~~~l~~~GF~~v~~~  195 (290)
T 2xyq_A          179 DLYKLMGHFSWWTAFVT  195 (290)
T ss_dssp             HHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHHcCCcEEEEE
Confidence            78889999999877653

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.20  E-value=8.6e-11  Score=105.03  Aligned_cols=89  Identities=12%  Similarity=0.228  Sum_probs=77.1

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      .....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+++|+++.+++.+++++..     ..++.++.+|+.+
T Consensus        35 d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~--~V~aVEid~~li~~a~~~~~~-----~~~v~vi~gD~l~  107 (295)
T 3gru_A           35 DKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAK--KVYVIEIDKSLEPYANKLKEL-----YNNIEIIWGDALK  107 (295)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCGGGHHHHHHHHHH-----CSSEEEEESCTTT
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHhcc-----CCCeEEEECchhh
Confidence            345567778888777888999999999999999999864  999999999999999998774     5689999999999


Q ss_pred             CCCCCCCcceEEeccc
Q 019957          231 LPFASGFVDAVHAGAA  246 (333)
Q Consensus       231 lp~~~~~fD~V~~~~v  246 (333)
                      +++++..||+|+++..
T Consensus       108 ~~~~~~~fD~Iv~NlP  123 (295)
T 3gru_A          108 VDLNKLDFNKVVANLP  123 (295)
T ss_dssp             SCGGGSCCSEEEEECC
T ss_pred             CCcccCCccEEEEeCc
Confidence            8888778999998744

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.19  E-value=8.4e-12  Score=112.44  Aligned_cols=103  Identities=15%  Similarity=0.118  Sum_probs=74.2

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeC----CHHHHHHHHHHHHhcCcCCCCCeEEEEc-cCCCCCCCCCCcc
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF----SENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVD  239 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~----s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD  239 (333)
                      .++.+|||+|||+|.++..+++.   .+|+|+|+    ++.+++...  ....+   .+++.++++ |+..++  .++||
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~--~~~~~---~~~v~~~~~~D~~~l~--~~~fD  150 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIP--MSTYG---WNLVRLQSGVDVFFIP--PERCD  150 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCC--CCSTT---GGGEEEECSCCTTTSC--CCCCS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHH--hhhcC---CCCeEEEeccccccCC--cCCCC
Confidence            45779999999999999999987   28999999    554332111  01111   257899998 888776  56899


Q ss_pred             eEEeccccc---cCCChH---HHHHHHHHhccCCcEEEEEEecc
Q 019957          240 AVHAGAALH---CWPSPS---NAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       240 ~V~~~~vl~---h~~d~~---~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      +|++..+..   +..+..   .+|.++.++|||||.|++.++..
T Consensus       151 ~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          151 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             EEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            999976653   222222   47899999999999999876544

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.17  E-value=1.5e-10  Score=107.84  Aligned_cols=127  Identities=11%  Similarity=0.034  Sum_probs=97.0

Q ss_pred             CCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCC-------------------------------------
Q 019957          148 FPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY-------------------------------------  190 (333)
Q Consensus       148 ~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-------------------------------------  190 (333)
                      -|..+.....+.......++..|||.+||+|.++..++..+.+                                     
T Consensus       183 Apl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~  262 (393)
T 3k0b_A          183 APIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQ  262 (393)
T ss_dssp             CSCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred             CCCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccC
Confidence            3455666677777777677889999999999999888765432                                     


Q ss_pred             -CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccc-cC---CChHHHHHHHHHhcc
Q 019957          191 -SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH-CW---PSPSNAVAEISRILR  265 (333)
Q Consensus       191 -~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~-h~---~d~~~~l~~~~r~Lk  265 (333)
                       .+++|+|+++.+++.|++++...|+  ...+.++++|+.+++.. .+||+|+++--.. .+   .+...+.+++.+.||
T Consensus       263 ~~~V~GvDid~~al~~Ar~Na~~~gl--~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk  339 (393)
T 3k0b_A          263 PLNIIGGDIDARLIEIAKQNAVEAGL--GDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYK  339 (393)
T ss_dssp             CCCEEEEESCHHHHHHHHHHHHHTTC--TTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHh
Confidence             4699999999999999999998885  45799999999988764 5899999973321 11   123345666667777


Q ss_pred             C--CcEEEEEEecc
Q 019957          266 S--GGVFVGTTFLR  277 (333)
Q Consensus       266 p--gG~l~i~~~~~  277 (333)
                      +  ||.+++.+...
T Consensus       340 ~~~g~~~~iit~~~  353 (393)
T 3k0b_A          340 RMPTWSVYVLTSYE  353 (393)
T ss_dssp             TCTTCEEEEEECCT
T ss_pred             cCCCCEEEEEECCH
Confidence            6  99999988654

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.17  E-value=4.4e-10  Score=105.74  Aligned_cols=100  Identities=17%  Similarity=0.174  Sum_probs=79.5

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (333)
                      ..++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|++++..+++   . +.++.+|+.++...  +||+|++
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~~~--~V~gvD~s~~ai~~A~~n~~~ngl---~-v~~~~~d~~~~~~~--~fD~Vv~  359 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKRGF--NVKGFDSNEFAIEMARRNVEINNV---D-AEFEVASDREVSVK--GFDTVIV  359 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTC---C-EEEEECCTTTCCCT--TCSEEEE
T ss_pred             cCCCCEEEEeeccchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCC---c-EEEEECChHHcCcc--CCCEEEE
Confidence            34577999999999999999998754  999999999999999999988763   4 99999999887532  8999998


Q ss_pred             ccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       244 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      .-.-...  ...+++.+. .|+|||+++++.
T Consensus       360 dPPr~g~--~~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          360 DPPRAGL--HPRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             CCCTTCS--CHHHHHHHH-HHCCSEEEEEES
T ss_pred             cCCccch--HHHHHHHHH-hcCCCcEEEEEC
Confidence            5432111  134566664 599999999865

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.16  E-value=2.9e-10  Score=105.48  Aligned_cols=126  Identities=13%  Similarity=0.051  Sum_probs=97.6

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCC--------------------------------------
Q 019957          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--------------------------------------  190 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--------------------------------------  190 (333)
                      |..+.....+.......++..|||.+||+|.++..++..+.+                                      
T Consensus       177 pl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  256 (384)
T 3ldg_A          177 PIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQ  256 (384)
T ss_dssp             CCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred             CCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCC
Confidence            445666677777777677889999999999999888765432                                      


Q ss_pred             CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccc-cCC---ChHHHHHHHHHhccC
Q 019957          191 SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH-CWP---SPSNAVAEISRILRS  266 (333)
Q Consensus       191 ~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~-h~~---d~~~~l~~~~r~Lkp  266 (333)
                      .+++|+|+++.+++.|++++...|+  ...+.++++|+.+++.. .+||+|+++--.. .+.   +...+.+++.+.||+
T Consensus       257 ~~v~GvDid~~al~~Ar~Na~~~gl--~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~  333 (384)
T 3ldg_A          257 LDISGFDFDGRMVEIARKNAREVGL--EDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAP  333 (384)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh
Confidence            4699999999999999999999885  55799999999998764 4899999974332 222   234566777777776


Q ss_pred             --CcEEEEEEecc
Q 019957          267 --GGVFVGTTFLR  277 (333)
Q Consensus       267 --gG~l~i~~~~~  277 (333)
                        ||.+++.+...
T Consensus       334 ~~g~~~~iit~~~  346 (384)
T 3ldg_A          334 LKTWSQFILTNDT  346 (384)
T ss_dssp             CTTSEEEEEESCT
T ss_pred             CCCcEEEEEECCH
Confidence              99999988643

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.15  E-value=1.6e-10  Score=107.37  Aligned_cols=126  Identities=14%  Similarity=0.081  Sum_probs=97.6

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCC--------------------------------------
Q 019957          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--------------------------------------  190 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--------------------------------------  190 (333)
                      |..+.....+.......++.+|||++||+|.++..++..+.+                                      
T Consensus       178 pl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  257 (385)
T 3ldu_A          178 PIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK  257 (385)
T ss_dssp             CCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred             CCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence            445666677777777777889999999999999888776321                                      


Q ss_pred             CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccc-cC---CChHHHHHHHHHhccC
Q 019957          191 SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALH-CW---PSPSNAVAEISRILRS  266 (333)
Q Consensus       191 ~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~-h~---~d~~~~l~~~~r~Lkp  266 (333)
                      .+|+|+|+++.+++.|++++..+|+  ...+.+.++|+.+++.+ .+||+|+++--.. .+   .+...+.+++.++||+
T Consensus       258 ~~V~GvDid~~ai~~Ar~Na~~~gl--~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~  334 (385)
T 3ldu_A          258 FKIYGYDIDEESIDIARENAEIAGV--DEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK  334 (385)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh
Confidence            4799999999999999999998875  45799999999988754 5899999965432 12   2234567777778876


Q ss_pred             --CcEEEEEEecc
Q 019957          267 --GGVFVGTTFLR  277 (333)
Q Consensus       267 --gG~l~i~~~~~  277 (333)
                        |+.+++.+.+.
T Consensus       335 ~~g~~~~iit~~~  347 (385)
T 3ldu_A          335 LKNWSYYLITSYE  347 (385)
T ss_dssp             SBSCEEEEEESCT
T ss_pred             CCCCEEEEEECCH
Confidence              99998888644

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.15  E-value=2.9e-10  Score=102.44  Aligned_cols=117  Identities=12%  Similarity=0.077  Sum_probs=86.6

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      .+...+...++.+|||+|||+|..+..++.. +...+|+++|+++.+++.++++++..|   ..++.++.+|+.+++...
T Consensus        93 l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g---~~~v~~~~~D~~~~~~~~  169 (309)
T 2b9e_A           93 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG---VSCCELAEEDFLAVSPSD  169 (309)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCGGGSCTTC
T ss_pred             HHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCeEEEEeCChHhcCccc
Confidence            4445666778899999999999999999886 345699999999999999999999877   457999999998765322


Q ss_pred             ---CCcceEEec------cccccCCC-----------h-------HHHHHHHHHhccCCcEEEEEEecc
Q 019957          236 ---GFVDAVHAG------AALHCWPS-----------P-------SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       236 ---~~fD~V~~~------~vl~h~~d-----------~-------~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                         .+||.|++.      +++.+-+|           .       .++|+.+.++|+ ||+|+..|-..
T Consensus       170 ~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~  237 (309)
T 2b9e_A          170 PRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL  237 (309)
T ss_dssp             GGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred             cccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence               579999962      33332112           1       235677777776 99999887554

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.09  E-value=4.2e-10  Score=98.62  Aligned_cols=86  Identities=12%  Similarity=0.191  Sum_probs=71.6

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      .....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+++|+++.+++.+++++..     ..++.++.+|+.+
T Consensus        14 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~--~V~avEid~~~~~~~~~~~~~-----~~~v~~i~~D~~~   86 (255)
T 3tqs_A           14 DSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECD--NLALVEIDRDLVAFLQKKYNQ-----QKNITIYQNDALQ   86 (255)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSS--EEEEEECCHHHHHHHHHHHTT-----CTTEEEEESCTTT
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHhh-----CCCcEEEEcchHh
Confidence            345667788888878888999999999999999999864  999999999999999998765     4589999999999


Q ss_pred             CCCCC----CCcceEEec
Q 019957          231 LPFAS----GFVDAVHAG  244 (333)
Q Consensus       231 lp~~~----~~fD~V~~~  244 (333)
                      +++++    +.|| |+++
T Consensus        87 ~~~~~~~~~~~~~-vv~N  103 (255)
T 3tqs_A           87 FDFSSVKTDKPLR-VVGN  103 (255)
T ss_dssp             CCGGGSCCSSCEE-EEEE
T ss_pred             CCHHHhccCCCeE-EEec
Confidence            87643    4688 4443

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=99.02  E-value=3.2e-09  Score=97.76  Aligned_cols=148  Identities=14%  Similarity=0.084  Sum_probs=98.3

Q ss_pred             CCeEEEEcCCcCHHHHHHHHh-----------------CCCCeEEEEeCC-----------HHHHHHHHHHHHhcCcCCC
Q 019957          167 GGLLVDVSCGSGLFSRKFAKS-----------------GTYSGVVALDFS-----------ENMLRQCYDFIKQDNTILT  218 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~-----------------~~~~~v~g~D~s-----------~~~~~~a~~~~~~~~~~~~  218 (333)
                      .-+|+|+||++|.++..+...                 .|..+|+.-|+-           +.+.+..++   ..|.  .
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~--~  127 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGR--K  127 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCC--C
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccC--C
Confidence            467999999999998877654                 245678899976           333332222   1110  1


Q ss_pred             CCeEEEEccCCC---CCCCCCCcceEEeccccccCCChHH---------------------------------------H
Q 019957          219 SNLALVRADVCR---LPFASGFVDAVHAGAALHCWPSPSN---------------------------------------A  256 (333)
Q Consensus       219 ~~i~~~~~d~~~---lp~~~~~fD~V~~~~vl~h~~d~~~---------------------------------------~  256 (333)
                      .+..|+.+....   -.|++++||+|+++.+||++.+...                                       +
T Consensus       128 ~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~F  207 (384)
T 2efj_A          128 IGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTF  207 (384)
T ss_dssp             TTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            234566655443   4578999999999999999865421                                       2


Q ss_pred             HHHHHHhccCCcEEEEEEecccCC--Ccc---hhhHHHHH-------------hhhccCCCCCHHHHHHHHHhCC-CcEE
Q 019957          257 VAEISRILRSGGVFVGTTFLRYTS--STS---LTGRVLRE-------------RILQNYNYLTEEEIEDLCTSCG-LTNY  317 (333)
Q Consensus       257 l~~~~r~LkpgG~l~i~~~~~~~~--~~~---~~~~~~~~-------------~~~~~~~~~t~~~l~~ll~~aG-f~~v  317 (333)
                      |+..++.|+|||++++........  ...   .+...|..             .....+++.+.+|++.++++.| |++.
T Consensus       208 L~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~  287 (384)
T 2efj_A          208 LRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEIL  287 (384)
T ss_dssp             HHHHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEE
T ss_pred             HHHHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEE
Confidence            555589999999999999887643  111   22333321             1113577899999999999985 7776


Q ss_pred             EE
Q 019957          318 TS  319 (333)
Q Consensus       318 ~~  319 (333)
                      +.
T Consensus       288 ~l  289 (384)
T 2efj_A          288 YL  289 (384)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.02  E-value=6.3e-10  Score=102.98  Aligned_cols=111  Identities=15%  Similarity=0.218  Sum_probs=83.0

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-  232 (333)
                      ....+.+.+... +.+|||+|||+|.++..+++...  +|+|+|+++.+++.|+++++.++   ..++.++.+|+.++. 
T Consensus       202 l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~~~--~V~gvd~~~~ai~~a~~n~~~ng---~~~v~~~~~d~~~~~~  275 (369)
T 3bt7_A          202 MLEWALDVTKGS-KGDLLELYCGNGNFSLALARNFD--RVLATEIAKPSVAAAQYNIAANH---IDNVQIIRMAAEEFTQ  275 (369)
T ss_dssp             HHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGGSS--EEEEECCCHHHHHHHHHHHHHTT---CCSEEEECCCSHHHHH
T ss_pred             HHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcC---CCceEEEECCHHHHHH
Confidence            344555555443 56899999999999999988654  99999999999999999998877   458999999986642 


Q ss_pred             -CCC--------------CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          233 -FAS--------------GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       233 -~~~--------------~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                       +..              .+||+|++.---      ..+..++.+.|+++|.+++.+.+
T Consensus       276 ~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr------~g~~~~~~~~l~~~g~ivyvsc~  328 (369)
T 3bt7_A          276 AMNGVREFNRLQGIDLKSYQCETIFVDPPR------SGLDSETEKMVQAYPRILYISCN  328 (369)
T ss_dssp             HHSSCCCCTTGGGSCGGGCCEEEEEECCCT------TCCCHHHHHHHTTSSEEEEEESC
T ss_pred             HHhhccccccccccccccCCCCEEEECcCc------cccHHHHHHHHhCCCEEEEEECC
Confidence             111              379999864211      12345677788899998887744

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=99.02  E-value=6.5e-09  Score=95.62  Aligned_cols=154  Identities=12%  Similarity=0.103  Sum_probs=99.4

Q ss_pred             CCeEEEEcCCcCHHHHHH--------HHhC-------CCCeEEEEeCCHHHHHHHHHHHHhcCc-------C--CCCCeE
Q 019957          167 GGLLVDVSCGSGLFSRKF--------AKSG-------TYSGVVALDFSENMLRQCYDFIKQDNT-------I--LTSNLA  222 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l--------~~~~-------~~~~v~g~D~s~~~~~~a~~~~~~~~~-------~--~~~~i~  222 (333)
                      ..+|+|+|||+|.++..+        .+.+       |..+|+.-|+-.+.....-+.+....-       .  ...+-.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            468999999999988876        2221       567889999876554433333332100       0  000112


Q ss_pred             EE---EccCCCCCCCCCCcceEEeccccccCCC--------------------------------------hHHHHHHHH
Q 019957          223 LV---RADVCRLPFASGFVDAVHAGAALHCWPS--------------------------------------PSNAVAEIS  261 (333)
Q Consensus       223 ~~---~~d~~~lp~~~~~fD~V~~~~vl~h~~d--------------------------------------~~~~l~~~~  261 (333)
                      |+   -+.+..-.|++++||+|+++.+||++.+                                      ...+|+..+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33   3344444578999999999999999873                                      234688889


Q ss_pred             HhccCCcEEEEEEecccCCC-c----------chhhHHHHH-------------hhhccCCCCCHHHHHHHHH-hCCCcE
Q 019957          262 RILRSGGVFVGTTFLRYTSS-T----------SLTGRVLRE-------------RILQNYNYLTEEEIEDLCT-SCGLTN  316 (333)
Q Consensus       262 r~LkpgG~l~i~~~~~~~~~-~----------~~~~~~~~~-------------~~~~~~~~~t~~~l~~ll~-~aGf~~  316 (333)
                      +.|+|||++++......... .          ..+...|..             .....+++.+.+|++.+++ +.||++
T Consensus       213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I  292 (374)
T 3b5i_A          213 AEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAI  292 (374)
T ss_dssp             HHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEE
T ss_pred             HHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEE
Confidence            99999999999998775321 0          111111211             0123567789999999998 599998


Q ss_pred             EEEE
Q 019957          317 YTSK  320 (333)
Q Consensus       317 v~~~  320 (333)
                      .+..
T Consensus       293 ~~le  296 (374)
T 3b5i_A          293 DKLV  296 (374)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7643

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.00  E-value=9e-10  Score=106.73  Aligned_cols=129  Identities=11%  Similarity=0.015  Sum_probs=99.7

Q ss_pred             CCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC------------------CCeEEEEeCCHHHHHHHH
Q 019957          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT------------------YSGVVALDFSENMLRQCY  207 (333)
Q Consensus       146 ~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~------------------~~~v~g~D~s~~~~~~a~  207 (333)
                      ..++.+....+.+.+.+.+.++.+|||.+||+|.++..+.+...                  ...++|+|+++.+++.|+
T Consensus       149 G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~  228 (541)
T 2ar0_A          149 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  228 (541)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             CeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHH
Confidence            44778888889999998887888999999999999887765410                  137999999999999999


Q ss_pred             HHHHhcCcCCCCC-----eEEEEccCCCCC-CCCCCcceEEeccccccCCC--------------hHHHHHHHHHhccCC
Q 019957          208 DFIKQDNTILTSN-----LALVRADVCRLP-FASGFVDAVHAGAALHCWPS--------------PSNAVAEISRILRSG  267 (333)
Q Consensus       208 ~~~~~~~~~~~~~-----i~~~~~d~~~lp-~~~~~fD~V~~~~vl~h~~d--------------~~~~l~~~~r~Lkpg  267 (333)
                      .++...+.   ..     ..+.++|....+ ...++||+|+++--+.....              ...++..+.+.||||
T Consensus       229 ~nl~l~gi---~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~g  305 (541)
T 2ar0_A          229 MNCLLHDI---EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG  305 (541)
T ss_dssp             HHHHTTTC---CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred             HHHHHhCC---CccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCC
Confidence            98876663   22     678889876543 34568999999754433221              236899999999999


Q ss_pred             cEEEEEEecc
Q 019957          268 GVFVGTTFLR  277 (333)
Q Consensus       268 G~l~i~~~~~  277 (333)
                      |++.+..+..
T Consensus       306 Gr~a~V~p~~  315 (541)
T 2ar0_A          306 GRAAVVVPDN  315 (541)
T ss_dssp             EEEEEEEEHH
T ss_pred             CEEEEEecCc
Confidence            9999988754

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.00  E-value=9.6e-10  Score=101.79  Aligned_cols=102  Identities=16%  Similarity=0.194  Sum_probs=82.8

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc---------------CcCCCCCeEEEEccCCC
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD---------------NTILTSNLALVRADVCR  230 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~---------------~~~~~~~i~~~~~d~~~  230 (333)
                      ++.+|||+|||+|.++..++...+..+|+++|+++.+++.++++++.+               ++   .++.++++|+..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl---~~i~v~~~Da~~  123 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE---KTIVINHDDANR  123 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS---SEEEEEESCHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC---CceEEEcCcHHH
Confidence            577999999999999999998855568999999999999999999887               53   349999999866


Q ss_pred             CCC-CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          231 LPF-ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       231 lp~-~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      +.. ..++||+|++.-    ...+..+++.+.+.||+||.++++.
T Consensus       124 ~~~~~~~~fD~I~lDP----~~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          124 LMAERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHHSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHhccCCCCEEEeCC----CCCHHHHHHHHHHhcCCCCEEEEEe
Confidence            431 135799999532    1234688999999999999887764

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.96  E-value=2.3e-09  Score=94.61  Aligned_cols=87  Identities=16%  Similarity=0.192  Sum_probs=72.3

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      .....+.+.+.+...++ +|||||||+|.++..+++.+.  +|+++|+++.+++.+++++.      ..++.++.+|+.+
T Consensus        32 d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~--~V~avEid~~~~~~l~~~~~------~~~v~vi~~D~l~  102 (271)
T 3fut_A           32 SEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGA--EVTAIEKDLRLRPVLEETLS------GLPVRLVFQDALL  102 (271)
T ss_dssp             CHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTC--CEEEEESCGGGHHHHHHHTT------TSSEEEEESCGGG
T ss_pred             CHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcC------CCCEEEEECChhh
Confidence            34566778888887778 999999999999999999874  99999999999999998764      2479999999998


Q ss_pred             CCCCCC-CcceEEeccc
Q 019957          231 LPFASG-FVDAVHAGAA  246 (333)
Q Consensus       231 lp~~~~-~fD~V~~~~v  246 (333)
                      +++++. .+|.|+++--
T Consensus       103 ~~~~~~~~~~~iv~NlP  119 (271)
T 3fut_A          103 YPWEEVPQGSLLVANLP  119 (271)
T ss_dssp             SCGGGSCTTEEEEEEEC
T ss_pred             CChhhccCccEEEecCc
Confidence            877542 6888887643

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.94  E-value=2.4e-09  Score=99.19  Aligned_cols=104  Identities=14%  Similarity=0.138  Sum_probs=83.6

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCcCCCCC-eEEEEccCCCCC--CCCCCcce
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSN-LALVRADVCRLP--FASGFVDA  240 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~-i~~~~~d~~~lp--~~~~~fD~  240 (333)
                      .++.+|||++||+|.++..++....+ .+|+++|+++.+++.++++++.+++  ..+ +.++.+|+.++.  ...++||+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl--~~~~v~v~~~Da~~~l~~~~~~~fD~  128 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI--PEDRYEIHGMEANFFLRKEWGFGFDY  128 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTC--CGGGEEEECSCHHHHHHSCCSSCEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCceEEEEeCCHHHHHHHhhCCCCcE
Confidence            45779999999999999999886422 5899999999999999999999884  334 999999985532  12457999


Q ss_pred             EEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      |++.-    ...+..+++.+.+.|++||+|+++.
T Consensus       129 V~lDP----~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          129 VDLDP----FGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             EEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECC----CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            99864    2334678999999999999887766

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.94  E-value=1.5e-09  Score=97.37  Aligned_cols=86  Identities=16%  Similarity=0.289  Sum_probs=71.2

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--C
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F  233 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~  233 (333)
                      +.+.+.+...++.+|||+|||+|.++..+++.++..+|+|+|+|+.+++.|++++...+    .++.++++|+.+++  +
T Consensus        16 ~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g----~~v~~v~~d~~~l~~~l   91 (301)
T 1m6y_A           16 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS----DRVSLFKVSYREADFLL   91 (301)
T ss_dssp             HHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT----TTEEEEECCGGGHHHHH
T ss_pred             HHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEECCHHHHHHHH
Confidence            45556677777889999999999999999998766799999999999999999987653    58999999998875  1


Q ss_pred             CC---CCcceEEecc
Q 019957          234 AS---GFVDAVHAGA  245 (333)
Q Consensus       234 ~~---~~fD~V~~~~  245 (333)
                      ..   .+||.|++..
T Consensus        92 ~~~g~~~~D~Vl~D~  106 (301)
T 1m6y_A           92 KTLGIEKVDGILMDL  106 (301)
T ss_dssp             HHTTCSCEEEEEEEC
T ss_pred             HhcCCCCCCEEEEcC
Confidence            11   5899999753

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.94  E-value=1.1e-09  Score=96.09  Aligned_cols=88  Identities=17%  Similarity=0.145  Sum_probs=67.8

Q ss_pred             HHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCH-------HHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE-------NMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       158 ~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~-------~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      +...+...++.+|||+|||+|.++..++..+.  +|+|+|+++       .+++.++++.+.+++  ..++.++++|+.+
T Consensus        75 l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~g~--~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~--~~ri~~~~~d~~~  150 (258)
T 2r6z_A           75 IAKAVNHTAHPTVWDATAGLGRDSFVLASLGL--TVTAFEQHPAVACLLSDGIRRALLNPETQDT--AARINLHFGNAAE  150 (258)
T ss_dssp             HHHHTTGGGCCCEEETTCTTCHHHHHHHHTTC--CEEEEECCHHHHHHHHHHHHHHHHSHHHHHH--HTTEEEEESCHHH
T ss_pred             HHHHhCcCCcCeEEEeeCccCHHHHHHHHhCC--EEEEEECChhhhHHHHHHHHHHHhHHHhhCC--ccCeEEEECCHHH
Confidence            33344445567999999999999999999754  999999999       999999887766553  3459999999977


Q ss_pred             C-C-CCC--CCcceEEecccccc
Q 019957          231 L-P-FAS--GFVDAVHAGAALHC  249 (333)
Q Consensus       231 l-p-~~~--~~fD~V~~~~vl~h  249 (333)
                      + + +++  ++||+|++.-.+.|
T Consensus       151 ~l~~~~~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          151 QMPALVKTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHHHHHHHHCCCSEEEECCCC--
T ss_pred             HHHhhhccCCCccEEEECCCCCC
Confidence            4 3 334  68999999766655

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.90  E-value=7.8e-09  Score=103.11  Aligned_cols=127  Identities=15%  Similarity=0.064  Sum_probs=93.1

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC----------------------------------------
Q 019957          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG----------------------------------------  188 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~----------------------------------------  188 (333)
                      |..+.....+.......++..|||.+||+|.++..++...                                        
T Consensus       173 pl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~  252 (703)
T 3v97_A          173 PIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGL  252 (703)
T ss_dssp             SSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcc
Confidence            4556666777777776677899999999999998877642                                        


Q ss_pred             --CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC--CCCCCCcceEEeccccc-cCC---ChHHHHH--
Q 019957          189 --TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--PFASGFVDAVHAGAALH-CWP---SPSNAVA--  258 (333)
Q Consensus       189 --~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~V~~~~vl~-h~~---d~~~~l~--  258 (333)
                        +...++|+|+++.+++.|++++...|+  ...+.+.++|+.++  |..+++||+|+++--.. .+.   +...+.+  
T Consensus       253 ~~~~~~i~G~Did~~av~~A~~N~~~agv--~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l  330 (703)
T 3v97_A          253 AEYSSHFYGSDSDARVIQRARTNARLAGI--GELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLL  330 (703)
T ss_dssp             HHCCCCEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHH
T ss_pred             ccCCccEEEEECCHHHHHHHHHHHHHcCC--CCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHH
Confidence              124799999999999999999999885  45699999999887  33344899999973322 122   1233344  


Q ss_pred             -HHHHhccCCcEEEEEEecc
Q 019957          259 -EISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       259 -~~~r~LkpgG~l~i~~~~~  277 (333)
                       ++.+.+.|||.+++.+.+.
T Consensus       331 ~~~lk~~~~g~~~~ilt~~~  350 (703)
T 3v97_A          331 GRIMKNQFGGWNLSLFSASP  350 (703)
T ss_dssp             HHHHHHHCTTCEEEEEESCH
T ss_pred             HHHHHhhCCCCeEEEEeCCH
Confidence             4444555899999988654

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.88  E-value=4.5e-08  Score=94.54  Aligned_cols=148  Identities=16%  Similarity=0.033  Sum_probs=110.8

Q ss_pred             cchhHHHHhhHHhhcc-----cCCCCCcHHHHHHHHHhhc----ccCCCeEEEEcCCcCHHHHHHHHhC---CCCeEEEE
Q 019957          129 PFVSFLYERGWRQNFN-----RSGFPGPDEEFKMAQEYFK----SAQGGLLVDVSCGSGLFSRKFAKSG---TYSGVVAL  196 (333)
Q Consensus       129 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~v~g~  196 (333)
                      +.++..|+...++...     .+.++.+....+.+.+.+.    +.++.+|||.+||+|.++..+.+..   ....++|+
T Consensus       175 D~lG~~YE~ll~~~a~~~~k~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~  254 (542)
T 3lkd_A          175 DMLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQ  254 (542)
T ss_dssp             THHHHHHHHHHHHHHCC---CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHhcccCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEE
Confidence            5566677776654332     3457889999999998887    4567899999999999988887763   24589999


Q ss_pred             eCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC--C-CCCCCcceEEeccccc--c-----------------CC---
Q 019957          197 DFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--P-FASGFVDAVHAGAALH--C-----------------WP---  251 (333)
Q Consensus       197 D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--p-~~~~~fD~V~~~~vl~--h-----------------~~---  251 (333)
                      |+++.+++.|+.++...|+. ..++.+.++|....  | ....+||+|+++--+.  .                 ++   
T Consensus       255 Eid~~~~~lA~~Nl~l~gi~-~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s  333 (542)
T 3lkd_A          255 ELNTSTYNLARMNMILHGVP-IENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKS  333 (542)
T ss_dssp             ESCHHHHHHHHHHHHHTTCC-GGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTT
T ss_pred             ECcHHHHHHHHHHHHHcCCC-cCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCc
Confidence            99999999999988776631 14678999998765  4 4567899999852111  0                 10   


Q ss_pred             C-hHHHHHHHHHhcc-CCcEEEEEEecc
Q 019957          252 S-PSNAVAEISRILR-SGGVFVGTTFLR  277 (333)
Q Consensus       252 d-~~~~l~~~~r~Lk-pgG~l~i~~~~~  277 (333)
                      + ...++..+.+.|| +||++.+..+..
T Consensus       334 ~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g  361 (542)
T 3lkd_A          334 KADFAFLLHGYYHLKQDNGVMAIVLPHG  361 (542)
T ss_dssp             CCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred             hhhHHHHHHHHHHhCCCceeEEEEecch
Confidence            1 1247999999999 999999988764

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.87  E-value=9.5e-09  Score=99.45  Aligned_cols=146  Identities=14%  Similarity=0.029  Sum_probs=106.4

Q ss_pred             cchhHHHHhhHHhhc-----ccCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC--------------
Q 019957          129 PFVSFLYERGWRQNF-----NRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT--------------  189 (333)
Q Consensus       129 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--------------  189 (333)
                      +.++..|+...++..     ....++.+...++.+.+.+.+.++ +|||.+||+|.++..+.+...              
T Consensus       203 D~lG~~yE~ll~~~a~~~~k~~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~  281 (544)
T 3khk_A          203 DILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQK  281 (544)
T ss_dssp             CSHHHHHHHHHHHHHHTTTCCSTTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHG
T ss_pred             hHHHHHHHHHHHHHHHhhCccCCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHh
Confidence            556667776655432     234578999999999999987655 999999999999887654210              


Q ss_pred             -CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-CCCCCcceEEecccccc------------------
Q 019957          190 -YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDAVHAGAALHC------------------  249 (333)
Q Consensus       190 -~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~~vl~h------------------  249 (333)
                       ...++|+|+++.+++.|+.++...|+  ..++.+.++|....+ +.+.+||+|+++--+..                  
T Consensus       282 ~~~~i~G~Eid~~~~~lA~~Nl~l~gi--~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~  359 (544)
T 3khk_A          282 KQISVYGQESNPTTWKLAAMNMVIRGI--DFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINT  359 (544)
T ss_dssp             GGEEEEECCCCHHHHHHHHHHHHHTTC--CCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECC
T ss_pred             hhceEEEEeCCHHHHHHHHHHHHHhCC--CcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCc
Confidence             34799999999999999998877764  334444778865544 45678999999533221                  


Q ss_pred             -------CC---C-hHHHHHHHHHhccCCcEEEEEEecc
Q 019957          250 -------WP---S-PSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       250 -------~~---d-~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                             ++   + ...++..+.+.|||||++.+..|+.
T Consensus       360 ~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g  398 (544)
T 3khk_A          360 NGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANG  398 (544)
T ss_dssp             C--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETH
T ss_pred             ccccccccCCCcchhHHHHHHHHHHhccCceEEEEecch
Confidence                   11   0 1268999999999999999988754

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.82  E-value=2.3e-07  Score=82.15  Aligned_cols=112  Identities=15%  Similarity=0.247  Sum_probs=86.3

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CcCCCCCeEEEEccCCCC-CCCCCCcceEE
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRL-PFASGFVDAVH  242 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~l-p~~~~~fD~V~  242 (333)
                      .+.+||-||.|.|..++.+.+..+..+++.+|+++.+++.+++.+...  +....++++++.+|.... .-..++||+|+
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi  162 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVII  162 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEE
Confidence            467999999999999999998866679999999999999999987531  211257999999999764 34467899999


Q ss_pred             eccccccCC----ChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          243 AGAALHCWP----SPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       243 ~~~vl~h~~----d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      ....=..-+    -...+++.+++.|+|||+++......
T Consensus       163 ~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp  201 (294)
T 3o4f_A          163 SDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVC  201 (294)
T ss_dssp             ESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEES
T ss_pred             EeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCc
Confidence            743211100    11478999999999999999876543

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.81  E-value=1.2e-08  Score=99.47  Aligned_cols=100  Identities=13%  Similarity=0.121  Sum_probs=73.9

Q ss_pred             CCeEEEEcCCcCHHHHHHHHh---C-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEE
Q 019957          167 GGLLVDVSCGSGLFSRKFAKS---G-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~---~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (333)
                      ...|||||||+|-++....++   + ...+|+++|.|+ +...+++..+.++.  ...|+++.+|++++..+ +++|+|+
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~--~dkVtVI~gd~eev~LP-EKVDIIV  433 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEW--GSQVTVVSSDMREWVAP-EKADIIV  433 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTT--GGGEEEEESCTTTCCCS-SCEEEEE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccC--CCeEEEEeCcceeccCC-cccCEEE
Confidence            357999999999885444433   2 223689999997 56678888888875  78899999999998654 6899999


Q ss_pred             ec---cccccCCChHHHHHHHHHhccCCcEEE
Q 019957          243 AG---AALHCWPSPSNAVAEISRILRSGGVFV  271 (333)
Q Consensus       243 ~~---~vl~h~~d~~~~l~~~~r~LkpgG~l~  271 (333)
                      +-   ..+-+-.-+ ..|....|.|||||+++
T Consensus       434 SEwMG~fLl~E~ml-evL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          434 SELLGSFADNELSP-ECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             CCCCBTTBGGGCHH-HHHHHHGGGEEEEEEEE
T ss_pred             EEcCcccccccCCH-HHHHHHHHhcCCCcEEc
Confidence            72   222221223 67888899999999864

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.81  E-value=1.8e-08  Score=88.00  Aligned_cols=76  Identities=17%  Similarity=0.388  Sum_probs=64.0

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+ ..+++|+|+++.+++.++++  .     ..++.++.+|+..+
T Consensus        17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~-~~~v~avEid~~~~~~~~~~--~-----~~~v~~i~~D~~~~   88 (249)
T 3ftd_A           17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHP-LKKLYVIELDREMVENLKSI--G-----DERLEVINEDASKF   88 (249)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSC-CSEEEEECCCHHHHHHHTTS--C-----CTTEEEECSCTTTC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcC-CCeEEEEECCHHHHHHHHhc--c-----CCCeEEEEcchhhC
Confidence            4456777777777778899999999999999999884 35999999999999999875  2     45899999999998


Q ss_pred             CCCC
Q 019957          232 PFAS  235 (333)
Q Consensus       232 p~~~  235 (333)
                      ++++
T Consensus        89 ~~~~   92 (249)
T 3ftd_A           89 PFCS   92 (249)
T ss_dssp             CGGG
T ss_pred             ChhH
Confidence            8764

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.79  E-value=1.8e-08  Score=89.26  Aligned_cols=78  Identities=14%  Similarity=0.197  Sum_probs=64.1

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCC--CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTY--SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (333)
                      .....+.+.+.+...++.+|||||||+|.++..+++.+..  .+|+|+|+++.+++.++++.       ..++.++.+|+
T Consensus        27 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-------~~~v~~i~~D~   99 (279)
T 3uzu_A           27 DHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-------GELLELHAGDA   99 (279)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-------GGGEEEEESCG
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-------CCCcEEEECCh
Confidence            3445677777887778889999999999999999998651  23999999999999999873       23799999999


Q ss_pred             CCCCCCC
Q 019957          229 CRLPFAS  235 (333)
Q Consensus       229 ~~lp~~~  235 (333)
                      .++++++
T Consensus       100 ~~~~~~~  106 (279)
T 3uzu_A          100 LTFDFGS  106 (279)
T ss_dssp             GGCCGGG
T ss_pred             hcCChhH
Confidence            9987653

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.79  E-value=9.6e-09  Score=89.96  Aligned_cols=128  Identities=16%  Similarity=0.080  Sum_probs=85.5

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHh-------CCC-----CeEEEEeCCH---HHHH-----------HHHHHHHhcC-----
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKS-------GTY-----SGVVALDFSE---NMLR-----------QCYDFIKQDN-----  214 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~-------~~~-----~~v~g~D~s~---~~~~-----------~a~~~~~~~~-----  214 (333)
                      +..+|||||+|+|+.+..+.+.       .|.     ..++++|..+   +.+.           .+++.+....     
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4568999999999988776543       453     4899999876   4444           4555544310     


Q ss_pred             -----cC-CCCCeEEEEccCCC-CCCCC----CCcceEEecc-ccccCCC--hHHHHHHHHHhccCCcEEEEEEecccCC
Q 019957          215 -----TI-LTSNLALVRADVCR-LPFAS----GFVDAVHAGA-ALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTS  280 (333)
Q Consensus       215 -----~~-~~~~i~~~~~d~~~-lp~~~----~~fD~V~~~~-vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~  280 (333)
                           +. ...+++++.+|+.+ ++..+    ..||+|+... .-..-++  ...+++.+.++|||||+|+..+  .   
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tys--a---  214 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT--S---  214 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESC--C---
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEe--C---
Confidence                 00 02467899999865 44222    2799999853 1111122  2578999999999999988522  1   


Q ss_pred             CcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957          281 STSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~  319 (333)
                                           ...+++.|.++||++.+.
T Consensus       215 ---------------------a~~vrr~L~~aGF~v~~~  232 (257)
T 2qy6_A          215 ---------------------AGFVRRGLQEAGFTMQKR  232 (257)
T ss_dssp             ---------------------BHHHHHHHHHHTEEEEEE
T ss_pred             ---------------------CHHHHHHHHHCCCEEEeC
Confidence                                 135778899999997764

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.78  E-value=1.5e-08  Score=92.51  Aligned_cols=150  Identities=13%  Similarity=0.099  Sum_probs=101.8

Q ss_pred             CCeEEEEcCCcCHHHHHHHHh----------------CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc---c
Q 019957          167 GGLLVDVSCGSGLFSRKFAKS----------------GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA---D  227 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~----------------~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~---d  227 (333)
                      .-+|+|+||++|.++..+...                .|..+|+.-|+-.+.....-+.+.....  ..+..|+.+   .
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~--~~~~~f~~gvpgS  129 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEND--VDGVCFINGVPGS  129 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCS--CTTCEEEEEEESC
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcc--cCCCEEEEecchh
Confidence            357999999999876644332                3456899999988777766665432110  112344444   4


Q ss_pred             CCCCCCCCCCcceEEeccccccCCChH---------------------------------HHHHHHHHhccCCcEEEEEE
Q 019957          228 VCRLPFASGFVDAVHAGAALHCWPSPS---------------------------------NAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~d~~---------------------------------~~l~~~~r~LkpgG~l~i~~  274 (333)
                      +..-.|+++++|+|+++.+||++.+..                                 .+|+..++.|+|||++++..
T Consensus       130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~  209 (359)
T 1m6e_X          130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            444568899999999999999986522                                 34888899999999999999


Q ss_pred             ecccCCC---------cchhhHHHHH-------------hhhccCCCCCHHHHHHHHHhCCC-cEEE
Q 019957          275 FLRYTSS---------TSLTGRVLRE-------------RILQNYNYLTEEEIEDLCTSCGL-TNYT  318 (333)
Q Consensus       275 ~~~~~~~---------~~~~~~~~~~-------------~~~~~~~~~t~~~l~~ll~~aGf-~~v~  318 (333)
                      ..+....         ...+...|..             .....+++.+.+|++.++++.|. ++..
T Consensus       210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~  276 (359)
T 1m6e_X          210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDH  276 (359)
T ss_dssp             EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEE
T ss_pred             ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEE
Confidence            8775321         1122333321             11245678899999999999965 6554

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.78  E-value=2.4e-07  Score=77.76  Aligned_cols=111  Identities=9%  Similarity=0.059  Sum_probs=80.0

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC--
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL--  231 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l--  231 (333)
                      ..+++...+.  +..+||||||  |+.+..+++. ++.+|+.+|.++...+.++++++..|+....++.++.+|+.+.  
T Consensus        20 ~~~~L~~~l~--~a~~VLEiGt--GySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~   94 (202)
T 3cvo_A           20 EAEALRMAYE--EAEVILEYGS--GGSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGD   94 (202)
T ss_dssp             HHHHHHHHHH--HCSEEEEESC--SHHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCG
T ss_pred             HHHHHHHHhh--CCCEEEEECc--hHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhc
Confidence            3444444333  4679999998  4677777764 2569999999999999999999987631134799999997542  


Q ss_pred             -------------C--------C-CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          232 -------------P--------F-ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       232 -------------p--------~-~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                                   +        . ..++||+|+...-     .....+..+.+.|+|||++++-.
T Consensus        95 wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~-----k~~~~~~~~l~~l~~GG~Iv~DN  154 (202)
T 3cvo_A           95 WGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGR-----FRVGCALATAFSITRPVTLLFDD  154 (202)
T ss_dssp             GGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSS-----SHHHHHHHHHHHCSSCEEEEETT
T ss_pred             ccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCC-----CchhHHHHHHHhcCCCeEEEEeC
Confidence                         2        1 2368999998763     22355667789999999996644

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.74  E-value=7e-09  Score=90.65  Aligned_cols=87  Identities=9%  Similarity=0.134  Sum_probs=65.2

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ....+.+.+.+...++.+|||||||+|.++. +.+ +...+|+++|+++.+++.+++++..     .+++.++.+|+..+
T Consensus         7 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~-----~~~v~~i~~D~~~~   79 (252)
T 1qyr_A            7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFL-----GPKLTIYQQDAMTF   79 (252)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTT-----GGGEEEECSCGGGC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhcc-----CCceEEEECchhhC
Confidence            3455677777777778899999999999999 654 4422399999999999999986543     24799999999988


Q ss_pred             CCCC-----CCcceEEecc
Q 019957          232 PFAS-----GFVDAVHAGA  245 (333)
Q Consensus       232 p~~~-----~~fD~V~~~~  245 (333)
                      ++++     +..|.|+++-
T Consensus        80 ~~~~~~~~~~~~~~vvsNl   98 (252)
T 1qyr_A           80 NFGELAEKMGQPLRVFGNL   98 (252)
T ss_dssp             CHHHHHHHHTSCEEEEEEC
T ss_pred             CHHHhhcccCCceEEEECC
Confidence            7543     1235666553

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.69  E-value=3.3e-08  Score=86.01  Aligned_cols=110  Identities=14%  Similarity=0.146  Sum_probs=74.1

Q ss_pred             hcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceE
Q 019957          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (333)
                      ....++.+|||+|||+|.++..+++..+...++|+|+..++...... ....    ..++..+..+++...+.+++||+|
T Consensus        70 ~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~-~~~~----g~~ii~~~~~~dv~~l~~~~~DlV  144 (277)
T 3evf_A           70 GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN-VQSL----GWNIITFKDKTDIHRLEPVKCDTL  144 (277)
T ss_dssp             TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC-CCBT----TGGGEEEECSCCTTTSCCCCCSEE
T ss_pred             CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc-cCcC----CCCeEEEeccceehhcCCCCccEE
Confidence            33456779999999999999998876444578888887442100000 0000    114556677766566678899999


Q ss_pred             EeccccccCCCh----H---HHHHHHHHhccCC-cEEEEEEecc
Q 019957          242 HAGAALHCWPSP----S---NAVAEISRILRSG-GVFVGTTFLR  277 (333)
Q Consensus       242 ~~~~vl~h~~d~----~---~~l~~~~r~Lkpg-G~l~i~~~~~  277 (333)
                      ++..+.+ ....    .   .+|+.+.++|+|| |.|++-.+..
T Consensus       145 lsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~p  187 (277)
T 3evf_A          145 LCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAP  187 (277)
T ss_dssp             EECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred             EecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Confidence            9977555 3322    1   3468889999999 9999977663

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.66  E-value=1.8e-08  Score=93.70  Aligned_cols=74  Identities=12%  Similarity=0.159  Sum_probs=63.1

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CcCCCCCeEEEEccCCCC-CC-CCCCcceE
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRL-PF-ASGFVDAV  241 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~l-p~-~~~~fD~V  241 (333)
                      ++.+|||+|||+|..+..+++.+.  +|+++|+|+.+++.|+++++..  |   ..++.++++|+.+. +. .+++||+|
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~--~V~~VD~s~~~l~~Ar~N~~~~~~g---l~~i~~i~~Da~~~L~~~~~~~fDvV  167 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKAS--QGIYIERNDETAVAARHNIPLLLNE---GKDVNILTGDFKEYLPLIKTFHPDYI  167 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHSCT---TCEEEEEESCGGGSHHHHHHHCCSEE
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHhHHHhccC---CCcEEEEECcHHHhhhhccCCCceEE
Confidence            378999999999999999988764  9999999999999999999876  5   36799999999874 32 24589999


Q ss_pred             Eec
Q 019957          242 HAG  244 (333)
Q Consensus       242 ~~~  244 (333)
                      ++.
T Consensus       168 ~lD  170 (410)
T 3ll7_A          168 YVD  170 (410)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            984

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.65  E-value=8e-08  Score=93.78  Aligned_cols=101  Identities=10%  Similarity=0.095  Sum_probs=71.9

Q ss_pred             CCeEEEEcCCcCHHHHHHHH----hC---------CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          167 GGLLVDVSCGSGLFSRKFAK----SG---------TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~----~~---------~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      +..|||||||+|-++.....    .+         ...+|+++|.++.+....+.+.. +++  ...|+++.+|++++..
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~--~d~VtVI~gd~eev~l  486 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTW--KRRVTIIESDMRSLPG  486 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTT--TTCSEEEESCGGGHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCC--CCeEEEEeCchhhccc
Confidence            45799999999999643222    22         23489999999977766665544 553  6779999999998765


Q ss_pred             C-----CCCcceEEeccccccCC---ChHHHHHHHHHhccCCcEEE
Q 019957          234 A-----SGFVDAVHAGAALHCWP---SPSNAVAEISRILRSGGVFV  271 (333)
Q Consensus       234 ~-----~~~fD~V~~~~vl~h~~---d~~~~l~~~~r~LkpgG~l~  271 (333)
                      +     .+++|+|++-.. ..+.   -....|..+.+.|||||+++
T Consensus       487 p~~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          487 IAKDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHHHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             ccccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence            3     578999998432 1111   12357888889999999865

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.64  E-value=3.1e-08  Score=86.64  Aligned_cols=110  Identities=16%  Similarity=0.037  Sum_probs=72.4

Q ss_pred             HHHHHhhcccCC--CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC--cC-C---CCCeEEEEcc
Q 019957          156 KMAQEYFKSAQG--GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN--TI-L---TSNLALVRAD  227 (333)
Q Consensus       156 ~~~~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~-~---~~~i~~~~~d  227 (333)
                      +.+.+.+...++  .+|||+|||+|..+..++..+.  +|+++|+++.+.+.+++.++...  .. .   ..+++++.+|
T Consensus        76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~--~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D  153 (258)
T 2oyr_A           76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS  153 (258)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred             HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC
Confidence            344455555556  7999999999999999999865  89999999987766666543221  00 0   1468999999


Q ss_pred             CCC-CCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCc
Q 019957          228 VCR-LPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG  268 (333)
Q Consensus       228 ~~~-lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG  268 (333)
                      ..+ ++...++||+|++.-.+.+-. ....+++..++|++.+
T Consensus       154 ~~~~L~~~~~~fDvV~lDP~y~~~~-~saavkk~~~~lr~l~  194 (258)
T 2oyr_A          154 SLTALTDITPRPQVVYLDPMFPHKQ-KSALVKKEMRVFQSLV  194 (258)
T ss_dssp             HHHHSTTCSSCCSEEEECCCCCCCC-C-----HHHHHHHHHS
T ss_pred             HHHHHHhCcccCCEEEEcCCCCCcc-cchHHHHHHHHHHHhh
Confidence            876 332234799999987766532 2244555556665544

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.57  E-value=5.7e-07  Score=89.17  Aligned_cols=132  Identities=14%  Similarity=0.093  Sum_probs=90.0

Q ss_pred             CCCCCcHHHHHHHHHh----hcc--cCCCeEEEEcCCcCHHHHHHHHhCC---CCeEEEEeCCHHHHHHH--HHHHHhcC
Q 019957          146 SGFPGPDEEFKMAQEY----FKS--AQGGLLVDVSCGSGLFSRKFAKSGT---YSGVVALDFSENMLRQC--YDFIKQDN  214 (333)
Q Consensus       146 ~~~~~~~~~~~~~~~~----l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~~~v~g~D~s~~~~~~a--~~~~~~~~  214 (333)
                      +.++.+......+...    +..  .++.+|||.|||+|.++..+++..+   ..+++|+|+++.+++.|  +.++..++
T Consensus       295 GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~  374 (878)
T 3s1s_A          295 GVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ  374 (878)
T ss_dssp             BSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred             ceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence            4577888888887776    322  2467999999999999999988753   35799999999999999  44333211


Q ss_pred             cC-CCCCeEEEEccCCCC-CCCCCCcceEEecccccc-CC---------------------------C-hHHHHHHHHHh
Q 019957          215 TI-LTSNLALVRADVCRL-PFASGFVDAVHAGAALHC-WP---------------------------S-PSNAVAEISRI  263 (333)
Q Consensus       215 ~~-~~~~i~~~~~d~~~l-p~~~~~fD~V~~~~vl~h-~~---------------------------d-~~~~l~~~~r~  263 (333)
                      +. ......+...|+... +...++||+|+++=-.-. ..                           + ...++..+.+.
T Consensus       375 LlhGi~~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~l  454 (878)
T 3s1s_A          375 LVSSNNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTEL  454 (878)
T ss_dssp             TCBTTBCCEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHH
T ss_pred             hhcCCCcceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHh
Confidence            10 012234555565543 234578999999543311 11                           1 12467889999


Q ss_pred             ccCCcEEEEEEecc
Q 019957          264 LRSGGVFVGTTFLR  277 (333)
Q Consensus       264 LkpgG~l~i~~~~~  277 (333)
                      |++||++.+..|..
T Consensus       455 LKpGGrLAfIlP~s  468 (878)
T 3s1s_A          455 VQDGTVISAIMPKQ  468 (878)
T ss_dssp             SCTTCEEEEEEETH
T ss_pred             cCCCcEEEEEEChH
Confidence            99999999999865

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.50  E-value=7.6e-07  Score=81.42  Aligned_cols=134  Identities=11%  Similarity=0.028  Sum_probs=98.2

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC---CCCCeEEEEccCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---LTSNLALVRADVCRLP  232 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~---~~~~i~~~~~d~~~lp  232 (333)
                      .+....+.+.++.+|||+.+|.|.=+..++..+....++++|+++..++..+++++..+..   ...++.+...|...++
T Consensus       138 ~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~  217 (359)
T 4fzv_A          138 LLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWG  217 (359)
T ss_dssp             HHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHH
T ss_pred             HHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcc
Confidence            3445567788899999999999999999988876668999999999999999988876531   1247888888887654


Q ss_pred             -CCCCCcceEEe----cc----ccccCCCh----------------HHHHHHHHHhccCCcEEEEEEecccCCCcchhhH
Q 019957          233 -FASGFVDAVHA----GA----ALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR  287 (333)
Q Consensus       233 -~~~~~fD~V~~----~~----vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~  287 (333)
                       ...+.||.|++    ++    ++..-++.                .++|..+.+.|||||+|+.+|-......+.....
T Consensus       218 ~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~vV~  297 (359)
T 4fzv_A          218 ELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQ  297 (359)
T ss_dssp             HHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHHHH
T ss_pred             hhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHHHH
Confidence             34578999995    32    22211111                2578888899999999999997765444444333


Q ss_pred             HH
Q 019957          288 VL  289 (333)
Q Consensus       288 ~~  289 (333)
                      .+
T Consensus       298 ~~  299 (359)
T 4fzv_A          298 GA  299 (359)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.43  E-value=1.2e-07  Score=82.57  Aligned_cols=109  Identities=17%  Similarity=0.092  Sum_probs=71.8

Q ss_pred             cccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEE
Q 019957          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (333)
                      ...++.+|||+|||+|.++..+++..+...++|+|+...+...+... ...    ..++.....+.....+..+++|+|+
T Consensus        87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~----g~~ii~~~~~~dv~~l~~~~~DvVL  161 (282)
T 3gcz_A           87 YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTL----GWNLIRFKDKTDVFNMEVIPGDTLL  161 (282)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBT----TGGGEEEECSCCGGGSCCCCCSEEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccC----CCceEEeeCCcchhhcCCCCcCEEE
Confidence            44567799999999999999988765556799999976532111100 000    1233344433333334578999999


Q ss_pred             eccccccCCCh-------HHHHHHHHHhccCC--cEEEEEEecc
Q 019957          243 AGAALHCWPSP-------SNAVAEISRILRSG--GVFVGTTFLR  277 (333)
Q Consensus       243 ~~~vl~h~~d~-------~~~l~~~~r~Lkpg--G~l~i~~~~~  277 (333)
                      |..... ....       ..+|+-+.++|+||  |.|++-.+..
T Consensus       162 SDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~p  204 (282)
T 3gcz_A          162 CDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCP  204 (282)
T ss_dssp             ECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCC
T ss_pred             ecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecC
Confidence            987765 4332       13567778999999  9999988763

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.42  E-value=5.8e-06  Score=75.24  Aligned_cols=122  Identities=16%  Similarity=0.174  Sum_probs=84.5

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++.++||+||++|.++..+.+++.  .|+++|+.+ +......         .+++.++++|+.......+.||+|+|.
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~rg~--~V~aVD~~~-l~~~l~~---------~~~V~~~~~d~~~~~~~~~~~D~vvsD  277 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKRNM--WVYSVDNGP-MAQSLMD---------TGQVTWLREDGFKFRPTRSNISWMVCD  277 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC--EEEEECSSC-CCHHHHT---------TTCEEEECSCTTTCCCCSSCEEEEEEC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHCCC--EEEEEEhhh-cChhhcc---------CCCeEEEeCccccccCCCCCcCEEEEc
Confidence            4688999999999999999999865  999999864 2122221         678999999998877667789999997


Q ss_pred             cccccCCChHHHHHHHHHhccCC---cEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcE
Q 019957          245 AALHCWPSPSNAVAEISRILRSG---GVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN  316 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~Lkpg---G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~  316 (333)
                      .+    .+|...+..+.++|..|   +.++..-....    .. ...+..         ....+...++..||..
T Consensus       278 m~----~~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk----~~-~~~l~~---------~~~~i~~~l~~~g~~~  334 (375)
T 4auk_A          278 MV----EKPAKVAALMAQWLVNGWCRETIFNLKLPMK----KR-YEEVSH---------NLAYIQAQLDEHGINA  334 (375)
T ss_dssp             CS----SCHHHHHHHHHHHHHTTSCSEEEEEEECCSS----SH-HHHHHH---------HHHHHHHHHHHTTCCE
T ss_pred             CC----CChHHhHHHHHHHHhccccceEEEEEEeccc----ch-HHHHHH---------HHHHHHHHHHhcCcch
Confidence            65    45777778887877765   33332221111    00 111111         1246778899999964

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.38  E-value=1.1e-06  Score=77.54  Aligned_cols=130  Identities=9%  Similarity=0.103  Sum_probs=91.8

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhC-----CCCeEEEEeCCHH--------------------------HHHHHHHHHHhc
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSG-----TYSGVVALDFSEN--------------------------MLRQCYDFIKQD  213 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~g~D~s~~--------------------------~~~~a~~~~~~~  213 (333)
                      ..++.|||+|+..|..+..++...     ++.+++++|..+.                          .++.++++++..
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            446799999999999888776542     3568999996321                          366788888887


Q ss_pred             CcCCCCCeEEEEccCCC-CC-CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH
Q 019957          214 NTILTSNLALVRADVCR-LP-FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE  291 (333)
Q Consensus       214 ~~~~~~~i~~~~~d~~~-lp-~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~  291 (333)
                      |+. ..++.++.+|+.+ +| +..++||+|+.-.-.  ...-...|+.+...|+|||++++-+..       +    +..
T Consensus       185 gl~-~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD~~-------~----~~G  250 (282)
T 2wk1_A          185 DLL-DEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDDYM-------M----CPP  250 (282)
T ss_dssp             TCC-STTEEEEESCHHHHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESSCT-------T----CHH
T ss_pred             CCC-cCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcCCC-------C----CHH
Confidence            741 2789999999954 44 335789999987642  112356799999999999999885531       1    011


Q ss_pred             hhhccCCCCCHHHHHHHHHhCCCcEE
Q 019957          292 RILQNYNYLTEEEIEDLCTSCGLTNY  317 (333)
Q Consensus       292 ~~~~~~~~~t~~~l~~ll~~aGf~~v  317 (333)
                               ....+.+.+++.|++..
T Consensus       251 ---------~~~Av~Ef~~~~~i~~~  267 (282)
T 2wk1_A          251 ---------CKDAVDEYRAKFDIADE  267 (282)
T ss_dssp             ---------HHHHHHHHHHHTTCCSC
T ss_pred             ---------HHHHHHHHHHhcCCceE
Confidence                     13467777888887643

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.35  E-value=7.9e-06  Score=78.84  Aligned_cols=146  Identities=17%  Similarity=0.159  Sum_probs=104.4

Q ss_pred             cchhHHHHhhHHhhc----ccCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh----C---------CCC
Q 019957          129 PFVSFLYERGWRQNF----NRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS----G---------TYS  191 (333)
Q Consensus       129 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~---------~~~  191 (333)
                      +.++..|+...++..    ..+.++.+...++.+.+.+.+.++.+|+|-+||+|.++..+.+.    .         ...
T Consensus       176 d~lG~~yE~ll~~~~~~~g~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~  255 (530)
T 3ufb_A          176 HTLSRLYETMLREMRDAAGDSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQES  255 (530)
T ss_dssp             HHHHHHHHHHHHHHTTSSSSCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhcCcCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhh
Confidence            455666777665432    12358899999999999999988889999999999998766543    1         123


Q ss_pred             eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC----CCCCcceEEecccccc---------CC------C
Q 019957          192 GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDAVHAGAALHC---------WP------S  252 (333)
Q Consensus       192 ~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~V~~~~vl~h---------~~------d  252 (333)
                      .++|+|+++.+...|+.++--.|   .....+..+|....|.    ...+||+|+++--+.-         ++      +
T Consensus       256 ~i~G~E~~~~~~~la~mNl~lhg---~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~  332 (530)
T 3ufb_A          256 SIFGGEAKSLPYLLVQMNLLLHG---LEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAE  332 (530)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHT---CSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCB
T ss_pred             hhhhhhccHHHHHHHHHHHHhcC---CccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccch
Confidence            69999999999999998776665   3344667777765442    2357999998644321         11      1


Q ss_pred             h-HHHHHHHHHhcc-------CCcEEEEEEecc
Q 019957          253 P-SNAVAEISRILR-------SGGVFVGTTFLR  277 (333)
Q Consensus       253 ~-~~~l~~~~r~Lk-------pgG~l~i~~~~~  277 (333)
                      . ..++..+.+.||       +||++.+..|..
T Consensus       333 ~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g  365 (530)
T 3ufb_A          333 TAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNG  365 (530)
T ss_dssp             HHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHH
T ss_pred             hHHHHHHHHHHHhhhhhhccCCCceEEEEecch
Confidence            1 245777777776       799999998754

>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1

Probab=98.28  E-value=3e-07  Score=62.17  Aligned_cols=45  Identities=16%  Similarity=0.157  Sum_probs=38.3

Q ss_pred             ccCeecccCCCccccccCCCCccccccccCceeeCCCCccccCcCCceeeeccc
Q 019957           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS  110 (333)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~  110 (333)
                      ..++++||.|+++|.....         .+.+.|+.|+..|++++|+++++..+
T Consensus         7 LLeiL~CP~ck~~L~~~~~---------~g~LvC~~c~~~YPI~dGIPvmL~~E   51 (67)
T 2jny_A            7 LLEVLACPKDKGPLRYLES---------EQLLVNERLNLAYRIDDGIPVLLIDE   51 (67)
T ss_dssp             GTCCCBCTTTCCBCEEETT---------TTEEEETTTTEEEEEETTEECCCSSC
T ss_pred             HHHHhCCCCCCCcCeEeCC---------CCEEEcCCCCccccCCCCEeeeChhH
Confidence            4578999999999876543         36899999999999999999999863

>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}

Probab=98.24  E-value=3.7e-07  Score=62.00  Aligned_cols=44  Identities=18%  Similarity=0.218  Sum_probs=37.7

Q ss_pred             ccCeecccCCCccccccCCCCccccccccCceeeCCCCccccCcCCceeeecc
Q 019957           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVI  109 (333)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~  109 (333)
                      ..++++||.|+++|.....         .+.+.|+.||..|++.+|+++++..
T Consensus         5 LL~iL~CP~ck~~L~~~~~---------~~~LiC~~cg~~YPI~dGIPvmL~~   48 (68)
T 2jr6_A            5 FLDILVCPVTKGRLEYHQD---------KQELWSRQAKLAYPIKDGIPYMLEN   48 (68)
T ss_dssp             SSCCCBCSSSCCBCEEETT---------TTEEEETTTTEEEEEETTEECCCTT
T ss_pred             HhhheECCCCCCcCeEeCC---------CCEEEcCCCCcEecCCCCeeeeChh
Confidence            3578999999999876543         2689999999999999999999976

>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1

Probab=98.24  E-value=3.5e-07  Score=62.10  Aligned_cols=44  Identities=18%  Similarity=0.412  Sum_probs=37.6

Q ss_pred             ccCeecccCCCccccccCCCCccccccccCceeeCCCCccccCcCCceeeecc
Q 019957           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVI  109 (333)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~  109 (333)
                      ..++++||.|+++|.....         .+.+.|+.||..|++.+|+++++..
T Consensus         5 LL~iL~CP~ck~~L~~~~~---------~~~LiC~~cg~~YPI~dGIPvmL~~   48 (68)
T 2hf1_A            5 FLEILVCPLCKGPLVFDKS---------KDELICKGDRLAFPIKDGIPMMLES   48 (68)
T ss_dssp             CEEECBCTTTCCBCEEETT---------TTEEEETTTTEEEEEETTEECCCGG
T ss_pred             HhhheECCCCCCcCeEeCC---------CCEEEcCCCCcEecCCCCeeeeChh
Confidence            3468899999999876543         3689999999999999999999986

>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}

Probab=98.24  E-value=3.9e-07  Score=62.30  Aligned_cols=45  Identities=16%  Similarity=0.318  Sum_probs=38.4

Q ss_pred             ccCeecccCCCccccccCCCCccccccccCceeeCCCCccccCcCCceeeeccc
Q 019957           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS  110 (333)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~  110 (333)
                      ..++++||.|+++|.....         .+.+.|+.||..|++.+|+++++...
T Consensus         5 LL~iL~CP~ck~~L~~~~~---------~~~LiC~~cg~~YPI~dGIPvmL~~E   49 (70)
T 2js4_A            5 LLDILVCPVCKGRLEFQRA---------QAELVCNADRLAFPVRDGVPIMLEAE   49 (70)
T ss_dssp             CCCCCBCTTTCCBEEEETT---------TTEEEETTTTEEEEEETTEECCCGGG
T ss_pred             HhhheECCCCCCcCEEeCC---------CCEEEcCCCCceecCCCCeeeeChhh
Confidence            4578999999999876543         36899999999999999999999873

>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1

Probab=98.22  E-value=4.1e-07  Score=61.97  Aligned_cols=44  Identities=20%  Similarity=0.399  Sum_probs=37.5

Q ss_pred             ccCeecccCCCccccccCCCCccccccccCceeeCCCCccccCcCCceeeecc
Q 019957           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVI  109 (333)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~  109 (333)
                      ..++++||.|+++|.....         .+.+.|+.||..|++.+|+++++..
T Consensus         5 LLeiL~CP~ck~~L~~~~~---------~~~LiC~~cg~~YPI~dGIPvmL~~   48 (69)
T 2pk7_A            5 LLDILACPICKGPLKLSAD---------KTELISKGAGLAYPIRDGIPVMLES   48 (69)
T ss_dssp             GGGTCCCTTTCCCCEECTT---------SSEEEETTTTEEEEEETTEECCCGG
T ss_pred             HHhheeCCCCCCcCeEeCC---------CCEEEcCCCCcEecCcCCeeeeChh
Confidence            3468899999999876432         3689999999999999999999986

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.19  E-value=3.8e-06  Score=73.52  Aligned_cols=80  Identities=20%  Similarity=0.304  Sum_probs=65.4

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---  232 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---  232 (333)
                      +.+.+.+...+++.+||.+||.|..+..+.+.  ..+|+|+|.++.+++.+++ +..      .++.++.+++.+++   
T Consensus        12 ~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~------~rv~lv~~~f~~l~~~L   82 (285)
T 1wg8_A           12 QEALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHL------PGLTVVQGNFRHLKRHL   82 (285)
T ss_dssp             HHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCC------TTEEEEESCGGGHHHHH
T ss_pred             HHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hcc------CCEEEEECCcchHHHHH
Confidence            45556677778889999999999999999997  4499999999999999988 533      48999999998874   


Q ss_pred             --CCCCCcceEEec
Q 019957          233 --FASGFVDAVHAG  244 (333)
Q Consensus       233 --~~~~~fD~V~~~  244 (333)
                        ...+++|.|++.
T Consensus        83 ~~~g~~~vDgIL~D   96 (285)
T 1wg8_A           83 AALGVERVDGILAD   96 (285)
T ss_dssp             HHTTCSCEEEEEEE
T ss_pred             HHcCCCCcCEEEeC
Confidence              122579999963

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.16  E-value=4.5e-06  Score=76.24  Aligned_cols=108  Identities=12%  Similarity=0.146  Sum_probs=78.8

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-----cCCCCCeEEEEccCCCC----CCCCC
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-----TILTSNLALVRADVCRL----PFASG  236 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-----~~~~~~i~~~~~d~~~l----p~~~~  236 (333)
                      ++.+||=||.|.|..++.+.+.. ..+++.+|+++.+++.+++.+....     ....++++++.+|....    +-..+
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLK-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTC-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcC-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            46799999999999999999865 4689999999999999999864311     01134688999997542    11346


Q ss_pred             CcceEEecccccc-CCCh---------HHHHHHHHHhccCCcEEEEEE
Q 019957          237 FVDAVHAGAALHC-WPSP---------SNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       237 ~fD~V~~~~vl~h-~~d~---------~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      +||+|+....-.. ..+|         ..+++.+++.|+|||+++...
T Consensus       284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~  331 (381)
T 3c6k_A          284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG  331 (381)
T ss_dssp             CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            8999997532111 1122         367889999999999998765

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.14  E-value=3.8e-06  Score=65.86  Aligned_cols=88  Identities=15%  Similarity=0.121  Sum_probs=59.1

Q ss_pred             CCCeEEEEcCCcC-HHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC-CCcceEE
Q 019957          166 QGGLLVDVSCGSG-LFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS-GFVDAVH  242 (333)
Q Consensus       166 ~~~~vLDiGcG~G-~~~~~l~~-~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~-~~fD~V~  242 (333)
                      ++.+|||||||.| ..+..|++ .+.  +|+++|+++.+++                  +++.|+.+..... +.||+|.
T Consensus        35 ~~~rVlEVG~G~g~~vA~~La~~~g~--~V~atDInp~Av~------------------~v~dDiF~P~~~~Y~~~DLIY   94 (153)
T 2k4m_A           35 PGTRVVEVGAGRFLYVSDYIRKHSKV--DLVLTDIKPSHGG------------------IVRDDITSPRMEIYRGAALIY   94 (153)
T ss_dssp             SSSEEEEETCTTCCHHHHHHHHHSCC--EEEEECSSCSSTT------------------EECCCSSSCCHHHHTTEEEEE
T ss_pred             CCCcEEEEccCCChHHHHHHHHhCCC--eEEEEECCccccc------------------eEEccCCCCcccccCCcCEEE
Confidence            3579999999999 69999997 554  8999999886431                  7888987743221 4899998


Q ss_pred             eccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      +..-=   ++....+.++.+  +-|.-+++.....+
T Consensus        95 sirPP---~El~~~i~~lA~--~v~adliI~pL~~E  125 (153)
T 2k4m_A           95 SIRPP---AEIHSSLMRVAD--AVGARLIIKPLTGE  125 (153)
T ss_dssp             EESCC---TTTHHHHHHHHH--HHTCEEEEECBTTB
T ss_pred             EcCCC---HHHHHHHHHHHH--HcCCCEEEEcCCCC
Confidence            76531   122333344433  34667777665443

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.14  E-value=3.6e-06  Score=73.82  Aligned_cols=106  Identities=12%  Similarity=0.122  Sum_probs=68.3

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++.+|||+||++|.++..+.+..+...|+|+|+...+...... ....    ..++.....+.....+..+.+|+|++.
T Consensus        80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~----~~~iv~~~~~~di~~l~~~~~DlVlsD  154 (300)
T 3eld_A           80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTL----GWNIVKFKDKSNVFTMPTEPSDTLLCD  154 (300)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBT----TGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-cccc----CCceEEeecCceeeecCCCCcCEEeec
Confidence            46789999999999999999986545578999987532100000 0000    112333333333333446789999997


Q ss_pred             cccccCCCh-------HHHHHHHHHhccCC-cEEEEEEec
Q 019957          245 AALHCWPSP-------SNAVAEISRILRSG-GVFVGTTFL  276 (333)
Q Consensus       245 ~vl~h~~d~-------~~~l~~~~r~Lkpg-G~l~i~~~~  276 (333)
                      ..-. ...+       ..+|.-+.++|+|| |.|++-.+.
T Consensus       155 ~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          155 IGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             CCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             CcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            6555 4333       24577778999999 999998766

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=98.12  E-value=4.3e-07  Score=101.75  Aligned_cols=147  Identities=18%  Similarity=0.154  Sum_probs=69.9

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-CCCCCCcc
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGT-----YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVD  239 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~-----~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD  239 (333)
                      +..+|||||.|+|..+..+.+...     ..+++..|+|+...+.++++++..      .+.....|..+. ++..++||
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~------di~~~~~d~~~~~~~~~~~yd 1313 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL------HVTQGQWDPANPAPGSLGKAD 1313 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH------TEEEECCCSSCCCC-----CC
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc------ccccccccccccccCCCCcee
Confidence            456899999999977665544321     247999999988887777766542      222221233332 34456899


Q ss_pred             eEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~  319 (333)
                      +|++..+||-.++....|++++++|||||++++.+....... .....++.........+.+.++|..+|.++||..+..
T Consensus      1314 lvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~~-g~~~~~~~~~~r~~~~~~~~~~w~~~l~~~gf~~~~~ 1392 (2512)
T 2vz8_A         1314 LLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTLLAGHPL-GEMVGFLTSPEQGGRHLLSQDQWESLFAGASLHLVAL 1392 (2512)
T ss_dssp             EEEEECC--------------------CCEEEEEEC---------------------------CTTTTSSTTTTEEEEEE
T ss_pred             EEEEcccccccccHHHHHHHHHHhcCCCcEEEEEeccccccc-cccccccccccccCCcccCHHHHHHHHHhCCCceeee
Confidence            999999999888999999999999999999998775431100 0001111111001223577888999999999988764

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.01  E-value=4.6e-05  Score=66.49  Aligned_cols=110  Identities=15%  Similarity=0.163  Sum_probs=75.4

Q ss_pred             hcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc-cCCCCCCCCCCcce
Q 019957          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVDA  240 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD~  240 (333)
                      ....++.+|||+||++|.++..++.......|+|+|+-..--+.- ....+.+   ...+.++.+ |+..++.  ..+|+
T Consensus        90 ~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~---w~lV~~~~~~Dv~~l~~--~~~D~  163 (321)
T 3lkz_A           90 RFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYG---WNIVTMKSGVDVFYRPS--ECCDT  163 (321)
T ss_dssp             TSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTT---GGGEEEECSCCTTSSCC--CCCSE
T ss_pred             cCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcC---CcceEEEeccCHhhCCC--CCCCE
Confidence            344567799999999999999887775455799999865411000 0000111   134778877 8777763  57999


Q ss_pred             EEeccccccCCChH-------HHHHHHHHhccCC-cEEEEEEeccc
Q 019957          241 VHAGAALHCWPSPS-------NAVAEISRILRSG-GVFVGTTFLRY  278 (333)
Q Consensus       241 V~~~~vl~h~~d~~-------~~l~~~~r~Lkpg-G~l~i~~~~~~  278 (333)
                      |+|.-. +-.+++.       ++|+-+.++|++| |-|++-....+
T Consensus       164 ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY  208 (321)
T 3lkz_A          164 LLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPY  208 (321)
T ss_dssp             EEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred             EEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCC
Confidence            999766 7767663       3566667899998 89988776654

>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}

Probab=98.00  E-value=2.6e-06  Score=55.57  Aligned_cols=43  Identities=26%  Similarity=0.580  Sum_probs=36.8

Q ss_pred             ccCeecccCCCccccccCCCCccccccccCceeeC--CCCccccCcCCceeeeccc
Q 019957           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCR--KCDKTYSSKDNYLDLTVIS  110 (333)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~g~~~~~~~~  110 (333)
                      ..+++.||.|+++|....           +.+.|+  .|+..|++.+|++.++.++
T Consensus         7 lL~iL~CP~c~~~L~~~~-----------~~L~C~~~~c~~~YPI~dGIPvlL~~e   51 (56)
T 2kpi_A            7 LLEILACPACHAPLEERD-----------AELICTGQDCGLAYPVRDGIPVLLVDE   51 (56)
T ss_dssp             CTTSCCCSSSCSCEEEET-----------TEEEECSSSCCCEEEEETTEECCCTTT
T ss_pred             HHhheeCCCCCCcceecC-----------CEEEcCCcCCCcEEeeECCEeeeCHHH
Confidence            357889999999986643           589999  9999999999999998753

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=97.89  E-value=0.00029  Score=63.82  Aligned_cols=158  Identities=13%  Similarity=0.178  Sum_probs=102.7

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC------------------C
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI------------------L  217 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~------------------~  217 (333)
                      ..+.+++...+...|+.+|||.......+...++...++-+|. |..++.-++.+...+..                  .
T Consensus        87 ~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~  165 (334)
T 1rjd_A           87 AAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLID  165 (334)
T ss_dssp             HHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEE
T ss_pred             HHHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccC
Confidence            3344445434567899999999999999888755556777776 77777776666653100                  0


Q ss_pred             CCCeEEEEccCCCCCC---------CCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhh
Q 019957          218 TSNLALVRADVCRLPF---------ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTG  286 (333)
Q Consensus       218 ~~~i~~~~~d~~~lp~---------~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~  286 (333)
                      ..+..++.+|+.+...         ......++++-.+|.+++..  .++|+.+.+.. |+|.+++.+..........++
T Consensus       166 ~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg  244 (334)
T 1rjd_A          166 QGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFG  244 (334)
T ss_dssp             CSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHH
T ss_pred             CCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHH
Confidence            2578999999977421         22456788888889888644  46777777766 788877666554311111223


Q ss_pred             HH----HHH-h-h--hccCCCCCHHHHHHHHHhCCCc
Q 019957          287 RV----LRE-R-I--LQNYNYLTEEEIEDLCTSCGLT  315 (333)
Q Consensus       287 ~~----~~~-~-~--~~~~~~~t~~~l~~ll~~aGf~  315 (333)
                      +.    +.. . .  .....+.+.++..+.|.++||+
T Consensus       245 ~~m~~~l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~  281 (334)
T 1rjd_A          245 AIMQSNLKESRNLEMPTLMTYNSKEKYASRWSAAPNV  281 (334)
T ss_dssp             HHHHHHHHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred             HHHHHHhhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence            22    211 1 1  1223467999999999999997

>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}

Probab=97.89  E-value=4.7e-06  Score=60.38  Aligned_cols=53  Identities=15%  Similarity=0.105  Sum_probs=40.8

Q ss_pred             ccCeecccCCCccccccCC------------------CCccccccccCceeeCCCCccccCcCCceeeecc
Q 019957           57 EGDLFSCPICYEPLIRKGP------------------TGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVI  109 (333)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~------------------~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~  109 (333)
                      ..++|+||.|+++|.....                  .+....++..+.+.|+.|+..|++.+|+++++..
T Consensus         5 LLdILaCP~cK~pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YPI~dGIPvmL~~   75 (97)
T 2k5r_A            5 LLHLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIEDSIPVLLPE   75 (97)
T ss_dssp             TCSSCCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEETTEEECCGG
T ss_pred             HhhheECCCCCCcccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCccccCCCcccChH
Confidence            4678999999998765332                  1122334456789999999999999999999986

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.86  E-value=5.3e-05  Score=67.57  Aligned_cols=62  Identities=16%  Similarity=0.204  Sum_probs=52.2

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 019957          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD  213 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~  213 (333)
                      +.+.++++.+..... .++..|||++||+|..+..+.+.+.  +++|+|+++.+++.|++++...
T Consensus       219 ~~p~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~--~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          219 PFPLELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGR--RALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             CSCHHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHh
Confidence            345666777776665 5678999999999999999998876  9999999999999999998764

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.83  E-value=0.00011  Score=62.15  Aligned_cols=108  Identities=19%  Similarity=0.211  Sum_probs=73.8

Q ss_pred             cccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc-cCCCCCCCCCCcceE
Q 019957          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVDAV  241 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD~V  241 (333)
                      ...++.+|||+||++|.++..++.......|+|+|+-..-.+.- ......|   ...++|..+ |+..++  ...+|.|
T Consensus        75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~g---wn~v~fk~gvDv~~~~--~~~~Dtl  148 (267)
T 3p8z_A           75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYG---WNIVKLMSGKDVFYLP--PEKCDTL  148 (267)
T ss_dssp             SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTT---TTSEEEECSCCGGGCC--CCCCSEE
T ss_pred             CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcC---cCceEEEeccceeecC--CccccEE
Confidence            45577899999999999999888775456899999865322100 0001122   367899998 987665  3679999


Q ss_pred             EeccccccCCChH-------HHHHHHHHhccCCcEEEEEEeccc
Q 019957          242 HAGAALHCWPSPS-------NAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       242 ~~~~vl~h~~d~~-------~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      +|.-. +-.+++.       ++|+-+.++|++ |-+++-....+
T Consensus       149 lcDIg-eSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py  190 (267)
T 3p8z_A          149 LCDIG-ESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPY  190 (267)
T ss_dssp             EECCC-CCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCC
T ss_pred             EEecC-CCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCC
Confidence            98644 2334442       356666788998 78888776654

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.74  E-value=6.4e-05  Score=64.47  Aligned_cols=103  Identities=19%  Similarity=0.197  Sum_probs=64.3

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCC-CCe---EEEEc-cCCCCCCCCCCc
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT-SNL---ALVRA-DVCRLPFASGFV  238 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~-~~i---~~~~~-d~~~lp~~~~~f  238 (333)
                      ..++.+|||+||+.|.++..+++.-.-..|.|.++.... .     +  ...... .++   .+.++ |+.+++  ...+
T Consensus        71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-----~--~P~~~~~~Gv~~i~~~~G~Df~~~~--~~~~  140 (269)
T 2px2_A           71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-----E--EPMLMQSYGWNIVTMKSGVDVFYKP--SEIS  140 (269)
T ss_dssp             CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-----C--CCCCCCSTTGGGEEEECSCCGGGSC--CCCC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-----c--CCCcccCCCceEEEeeccCCccCCC--CCCC
Confidence            456889999999999999999886211133444443220 0     0  000001 233   44447 988754  5689


Q ss_pred             ceEEeccccccCCCh----H---HHHHHHHHhccCCc-EEEEEEecc
Q 019957          239 DAVHAGAALHCWPSP----S---NAVAEISRILRSGG-VFVGTTFLR  277 (333)
Q Consensus       239 D~V~~~~vl~h~~d~----~---~~l~~~~r~LkpgG-~l~i~~~~~  277 (333)
                      |+|+|...=. ..++    .   .+|.-+.++|+||| .|++-.+..
T Consensus       141 DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg  186 (269)
T 2px2_A          141 DTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP  186 (269)
T ss_dssp             SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred             CEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence            9999965433 3322    1   25666778999999 899877663

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.52  E-value=8.8e-05  Score=66.43  Aligned_cols=82  Identities=18%  Similarity=0.263  Sum_probs=64.8

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--  232 (333)
                      +.+.+.+...+++.++|..+|.|..+..+++. ++..+|+|+|.++.+++.++ ++ .     ..++.++.+++.++.  
T Consensus        47 ~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL-~-----~~Rv~lv~~nF~~l~~~  119 (347)
T 3tka_A           47 DEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI-D-----DPRFSIIHGPFSALGEY  119 (347)
T ss_dssp             HHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC-C-----CTTEEEEESCGGGHHHH
T ss_pred             HHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh-c-----CCcEEEEeCCHHHHHHH
Confidence            44556677778899999999999999999987 56789999999999999884 33 1     468999999998763  


Q ss_pred             CC----CCCcceEEec
Q 019957          233 FA----SGFVDAVHAG  244 (333)
Q Consensus       233 ~~----~~~fD~V~~~  244 (333)
                      ..    .+++|.|++.
T Consensus       120 L~~~g~~~~vDgILfD  135 (347)
T 3tka_A          120 VAERDLIGKIDGILLD  135 (347)
T ss_dssp             HHHTTCTTCEEEEEEE
T ss_pred             HHhcCCCCcccEEEEC
Confidence            11    1368888864

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=97.50  E-value=0.0014  Score=58.67  Aligned_cols=147  Identities=17%  Similarity=0.070  Sum_probs=95.3

Q ss_pred             CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---------CCCCCc
Q 019957          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------FASGFV  238 (333)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------~~~~~f  238 (333)
                      ..|+++|||.=.....+.. .....++-+| .|..++..++.+...+.....+..++.+|+.+ .         +....-
T Consensus       104 ~QvV~LGaGlDTra~Rl~~-~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~P  180 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDW-PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSAR  180 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCC-CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSC
T ss_pred             CeEEEeCCCCCchhhhccC-CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCC
Confidence            4799999998766555542 2235899999 59999998888875432225578899999976 3         111233


Q ss_pred             ceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCc----chhh-HHHHHhh-----h-ccCCC-CC-HH
Q 019957          239 DAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSST----SLTG-RVLRERI-----L-QNYNY-LT-EE  303 (333)
Q Consensus       239 D~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~----~~~~-~~~~~~~-----~-~~~~~-~t-~~  303 (333)
                      =++++-.+++++++.  ..+++.+...+.||+.+++..........    ..+. ..+....     . ....+ .+ .+
T Consensus       181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~  260 (310)
T 2uyo_A          181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENRA  260 (310)
T ss_dssp             EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTTCC
T ss_pred             EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCCcchhHHHHHHHHHHHHHcCCcCCCCccccccCCCChH
Confidence            467778888988753  57888888888899988887655432100    0001 1121111     1 22333 36 78


Q ss_pred             HHHHHHHhCCCcEE
Q 019957          304 EIEDLCTSCGLTNY  317 (333)
Q Consensus       304 ~l~~ll~~aGf~~v  317 (333)
                      ++.+.|.++||+.+
T Consensus       261 ~~~~~f~~~G~~~~  274 (310)
T 2uyo_A          261 VVADWLNRHGWRAT  274 (310)
T ss_dssp             CHHHHHTTTTEEEE
T ss_pred             HHHHHHHHCcCccc
Confidence            99999999999987

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.43  E-value=0.0022  Score=56.83  Aligned_cols=140  Identities=12%  Similarity=0.073  Sum_probs=81.9

Q ss_pred             cCCCeEEEEcCCcCHHHHHH----HHhCCCC--eEEEEeCCH--------H-HHHHHHHHHHhcCcC--CCCCeEEEEcc
Q 019957          165 AQGGLLVDVSCGSGLFSRKF----AKSGTYS--GVVALDFSE--------N-MLRQCYDFIKQDNTI--LTSNLALVRAD  227 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l----~~~~~~~--~v~g~D~s~--------~-~~~~a~~~~~~~~~~--~~~~i~~~~~d  227 (333)
                      .+.-+|||+|-|+|.+....    .+..+..  +++.+|..+        . ..+..+.........  ..-.+++..+|
T Consensus        95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD  174 (308)
T 3vyw_A           95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD  174 (308)
T ss_dssp             CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred             CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence            33457999999999865432    2335544  456666421        1 111122222211000  02245677888


Q ss_pred             CCC-CC-CCCCCcceEEeccccccCCCh----HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCC
Q 019957          228 VCR-LP-FASGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLT  301 (333)
Q Consensus       228 ~~~-lp-~~~~~fD~V~~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  301 (333)
                      +.+ ++ +.+..||+|+... +---.+|    ..+++.++++++|||+|.-  +.                        .
T Consensus       175 a~~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~laT--Yt------------------------a  227 (308)
T 3vyw_A          175 ARKRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWVS--YS------------------------S  227 (308)
T ss_dssp             HHHHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEEE--SC------------------------C
T ss_pred             HHHHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEEE--Ee------------------------C
Confidence            854 33 3455899999854 2333455    5899999999999998864  22                        2


Q ss_pred             HHHHHHHHHhCCCcEEEEEEeCe-EEEEEEe
Q 019957          302 EEEIEDLCTSCGLTNYTSKVQQS-FIMFAAQ  331 (333)
Q Consensus       302 ~~~l~~ll~~aGf~~v~~~~~~~-~~~~~a~  331 (333)
                      ...+++.|+++||++.+....+. --+.+|.
T Consensus       228 ag~VRR~L~~aGF~V~k~~G~g~KReml~A~  258 (308)
T 3vyw_A          228 SLSVRKSLLTLGFKVGSSREIGRKRKGTVAS  258 (308)
T ss_dssp             CHHHHHHHHHTTCEEEEEECC---CEEEEEE
T ss_pred             cHHHHHHHHHCCCEEEecCCCCCCCceeEEe
Confidence            24788999999999887543322 2444444

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.37  E-value=0.00065  Score=61.77  Aligned_cols=75  Identities=12%  Similarity=0.088  Sum_probs=59.3

Q ss_pred             cHHHHHHHHHhhcccC------CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEE
Q 019957          151 PDEEFKMAQEYFKSAQ------GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV  224 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~------~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~  224 (333)
                      .....+.|.+.+...+      +..|||||.|.|.++..|.+.....+++++|+++..+...++.. .     ..++.++
T Consensus        37 d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~-----~~~l~ii  110 (353)
T 1i4w_A           37 NPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E-----GSPLQIL  110 (353)
T ss_dssp             CHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T-----TSSCEEE
T ss_pred             CHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c-----CCCEEEE
Confidence            4556677777776543      57899999999999999998632348999999999998888765 2     4589999


Q ss_pred             EccCCCC
Q 019957          225 RADVCRL  231 (333)
Q Consensus       225 ~~d~~~l  231 (333)
                      .+|+..+
T Consensus       111 ~~D~l~~  117 (353)
T 1i4w_A          111 KRDPYDW  117 (353)
T ss_dssp             CSCTTCH
T ss_pred             ECCccch
Confidence            9999554

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.32  E-value=0.00073  Score=58.90  Aligned_cols=63  Identities=19%  Similarity=0.227  Sum_probs=51.4

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC
Q 019957          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN  214 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~  214 (333)
                      +.+..+++.+.+... .++..|||..||+|..+..+.+.+.  +++|+|+++..++.++++++..+
T Consensus       196 ~~p~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr--~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          196 PKPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             CCCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcc
Confidence            445667767666654 4678999999999999999998876  99999999999999999987643

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.13  E-value=0.0012  Score=57.71  Aligned_cols=96  Identities=9%  Similarity=0.009  Sum_probs=64.2

Q ss_pred             ccCCCeEEEEcC------CcCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCC
Q 019957          164 SAQGGLLVDVSC------GSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (333)
Q Consensus       164 ~~~~~~vLDiGc------G~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (333)
                      ...+.+|||+|+      ..|.  ..+++.++. +.++++|+.+-..              ... .++++|...+.. .+
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s--------------da~-~~IqGD~~~~~~-~~  168 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS--------------DAD-STLIGDCATVHT-AN  168 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC--------------SSS-EEEESCGGGEEE-SS
T ss_pred             ecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc--------------CCC-eEEEcccccccc-CC
Confidence            345789999996      5566  355555665 5899999976321              123 459999765432 47


Q ss_pred             CcceEEecccc---ccC--CC------hHHHHHHHHHhccCCcEEEEEEecc
Q 019957          237 FVDAVHAGAAL---HCW--PS------PSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       237 ~fD~V~~~~vl---~h~--~d------~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      +||+|+|-..=   .+.  ..      -..++.-+.++|+|||.|++-.+..
T Consensus       169 k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQG  220 (344)
T 3r24_A          169 KWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH  220 (344)
T ss_dssp             CEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred             CCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecC
Confidence            89999984331   111  11      1356777788999999999987544

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1

Probab=96.64  E-value=0.0014  Score=41.55  Aligned_cols=34  Identities=26%  Similarity=0.531  Sum_probs=25.0

Q ss_pred             cCeecccCCCc-cccccCCCCccccccccCceeeCCCCccccCc
Q 019957           58 GDLFSCPICYE-PLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (333)
Q Consensus        58 ~~~l~CP~C~~-~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  100 (333)
                      ...+.||.|++ .+.....         .+.+.|..||..|...
T Consensus         3 ~~~~~CP~C~~~~l~~d~~---------~gelvC~~CG~v~~e~   37 (50)
T 1pft_A            3 NKQKVCPACESAELIYDPE---------RGEIVCAKCGYVIEEN   37 (50)
T ss_dssp             SSCCSCTTTSCCCEEEETT---------TTEEEESSSCCBCCCC
T ss_pred             CccEeCcCCCCcceEEcCC---------CCeEECcccCCccccc
Confidence            35678999999 6654332         3689999999988543

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.48  E-value=0.013  Score=53.04  Aligned_cols=125  Identities=12%  Similarity=0.105  Sum_probs=77.6

Q ss_pred             CeEEEEcCCcCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC---CCCCcceEEe
Q 019957          168 GLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFVDAVHA  243 (333)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---~~~~fD~V~~  243 (333)
                      .+|||+-||.|.+...+...|.. ..+.++|+++.+++..+.+.        ++..++.+|+.++..   ....+|+|+.
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~--------~~~~~~~~Di~~~~~~~~~~~~~D~l~~   74 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF--------PHTQLLAKTIEGITLEEFDRLSFDMILM   74 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC--------TTSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhc--------cccccccCCHHHccHhHcCcCCcCEEEE
Confidence            47999999999999999988732 36999999999999888863        344577889887642   1126899998


Q ss_pred             ccccccC---------CChH-HHHHHHHHhc---c--CCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHH
Q 019957          244 GAALHCW---------PSPS-NAVAEISRIL---R--SGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDL  308 (333)
Q Consensus       244 ~~vl~h~---------~d~~-~~l~~~~r~L---k--pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~l  308 (333)
                      ..--+.+         .|+. .++.++.+++   +  |.  +++.+....     + ..           .-+.+.+.+.
T Consensus        75 gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~--~~~~ENV~~-----l-~~-----------~~~~~~i~~~  135 (343)
T 1g55_A           75 SPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKG-----F-EV-----------SSTRDLLIQT  135 (343)
T ss_dssp             CCC------------------CHHHHHHHHGGGCSSCCS--EEEEEEETT-----G-GG-----------SHHHHHHHHH
T ss_pred             cCCCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCC--EEEEeCCcc-----c-cC-----------HHHHHHHHHH
Confidence            5442222         2332 2344444444   4  44  333332221     0 00           0124678888


Q ss_pred             HHhCCCcEEEE
Q 019957          309 CTSCGLTNYTS  319 (333)
Q Consensus       309 l~~aGf~~v~~  319 (333)
                      |++.|+.+...
T Consensus       136 l~~~GY~v~~~  146 (343)
T 1g55_A          136 IENCGFQYQEF  146 (343)
T ss_dssp             HHHTTEEEEEE
T ss_pred             HHHCCCeeEEE
Confidence            89999987553

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=96.36  E-value=0.0024  Score=55.80  Aligned_cols=106  Identities=8%  Similarity=-0.053  Sum_probs=80.0

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CC---CCCCCcceE
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP---FASGFVDAV  241 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp---~~~~~fD~V  241 (333)
                      .+..+||+=+|+|.++..+...+  .+++.+|.++...+..+++++.     ..++.++..|... +.   -+..+||+|
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~~--d~~vfvE~~~~a~~~L~~Nl~~-----~~~~~V~~~D~~~~L~~l~~~~~~fdLV  163 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRSQ--DRLYLCELHPTEYNFLLKLPHF-----NKKVYVNHTDGVSKLNALLPPPEKRGLI  163 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCTT--SEEEEECCSHHHHHHHTTSCCT-----TSCEEEECSCHHHHHHHHCSCTTSCEEE
T ss_pred             cCCCceeEeCCcHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHHhCc-----CCcEEEEeCcHHHHHHHhcCCCCCccEE
Confidence            35579999999999999988854  4999999999999988887654     4579999999643 21   224579999


Q ss_pred             EeccccccCCChHHHHHHHHH--hccCCcEEEEEEeccc
Q 019957          242 HAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFLRY  278 (333)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~~~r--~LkpgG~l~i~~~~~~  278 (333)
                      ++.=-.+.-.+..++++.+.+  .+.++|++++.-|...
T Consensus       164 fiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~  202 (283)
T 2oo3_A          164 FIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVN  202 (283)
T ss_dssp             EECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred             EECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence            997665543455666766665  4568999999877654

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.26  E-value=0.023  Score=51.19  Aligned_cols=99  Identities=18%  Similarity=0.200  Sum_probs=65.9

Q ss_pred             hhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--C--CC
Q 019957          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F--AS  235 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~--~~  235 (333)
                      .....++.+||-+|+|. |.++..+++.. +.+|+++|.++..++.+++.    |     --.++...-.++.  .  ..
T Consensus       161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l----G-----a~~~i~~~~~~~~~~~~~~~  230 (340)
T 3s2e_A          161 VTDTRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRL----G-----AEVAVNARDTDPAAWLQKEI  230 (340)
T ss_dssp             TTTCCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT----T-----CSEEEETTTSCHHHHHHHHH
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHc----C-----CCEEEeCCCcCHHHHHHHhC
Confidence            34556788999999976 88888888874 44999999999988887662    1     1122221111110  0  12


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      +.+|+|+....      -...++.+.+.|+++|++++...
T Consensus       231 g~~d~vid~~g------~~~~~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          231 GGAHGVLVTAV------SPKAFSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             SSEEEEEESSC------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCEEEEeCC------CHHHHHHHHHHhccCCEEEEeCC
Confidence            36888875432      24568899999999999988643

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=96.25  E-value=0.044  Score=49.24  Aligned_cols=127  Identities=12%  Similarity=0.088  Sum_probs=83.1

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCC-CeE-EEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC---CCCCcceE
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTY-SGV-VALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFVDAV  241 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~-~~v-~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---~~~~fD~V  241 (333)
                      .-+++|+-||.|.+...+...|.. ..+ .++|+++.+.+..+.+...        . ++.+|+.++..   +...+|++
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~--------~-~~~~DI~~~~~~~i~~~~~Dil   80 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE--------E-VQVKNLDSISIKQIESLNCNTW   80 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC--------C-CBCCCTTTCCHHHHHHTCCCEE
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC--------C-cccCChhhcCHHHhccCCCCEE
Confidence            458999999999999999998732 346 7999999998888876532        1 56788877642   22368999


Q ss_pred             EeccccccC-----------CChH-HHHHHHHH-hccC---CcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHH
Q 019957          242 HAGAALHCW-----------PSPS-NAVAEISR-ILRS---GGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEI  305 (333)
Q Consensus       242 ~~~~vl~h~-----------~d~~-~~l~~~~r-~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l  305 (333)
                      +...--..+           .|+. .++.++.+ +++.   .-.+++.+....     + ..           .-+.+.+
T Consensus        81 ~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~g-----l-~~-----------~~~~~~i  143 (327)
T 3qv2_A           81 FMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPL-----F-KE-----------SLVFKEI  143 (327)
T ss_dssp             EECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGG-----G-GG-----------SHHHHHH
T ss_pred             EecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhh-----h-cC-----------hHHHHHH
Confidence            975443333           3554 45666666 5542   234555554332     1 10           0134678


Q ss_pred             HHHHHhCCCcEEEE
Q 019957          306 EDLCTSCGLTNYTS  319 (333)
Q Consensus       306 ~~ll~~aGf~~v~~  319 (333)
                      .+.|++.|+.+...
T Consensus       144 ~~~l~~~GY~v~~~  157 (327)
T 3qv2_A          144 YNILIKNQYYIKDI  157 (327)
T ss_dssp             HHHHHHTTCEEEEE
T ss_pred             HHHHHhCCCEEEEE
Confidence            88899999987554

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.13  E-value=0.039  Score=50.58  Aligned_cols=71  Identities=18%  Similarity=0.152  Sum_probs=56.0

Q ss_pred             CeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC--------CCCCcc
Q 019957          168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF--------ASGFVD  239 (333)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~--------~~~~fD  239 (333)
                      .++||+-||.|.++.-+...|. ..+.++|+++.+++..+.+        .++..++.+|+.++..        ....+|
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~-~~v~avE~d~~a~~t~~~N--------~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D   73 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGF-DVKMAVEIDQHAINTHAIN--------FPRSLHVQEDVSLLNAEIIKGFFKNDMPID   73 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTC-EEEEEECSCHHHHHHHHHH--------CTTSEEECCCGGGCCHHHHHHHHCSCCCCC
T ss_pred             CeEEEEccCcCHHHHHHHHCCC-cEEEEEeCCHHHHHHHHHh--------CCCCceEecChhhcCHHHHHhhcccCCCee
Confidence            4799999999999999999884 3577999999998887775        4466788899987641        245799


Q ss_pred             eEEecccc
Q 019957          240 AVHAGAAL  247 (333)
Q Consensus       240 ~V~~~~vl  247 (333)
                      +|+..---
T Consensus        74 ~i~ggpPC   81 (376)
T 3g7u_A           74 GIIGGPPC   81 (376)
T ss_dssp             EEEECCCC
T ss_pred             EEEecCCC
Confidence            99975443

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.09  E-value=0.022  Score=52.06  Aligned_cols=100  Identities=17%  Similarity=0.123  Sum_probs=66.0

Q ss_pred             hhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-----CCC
Q 019957          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFA  234 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~  234 (333)
                      .....++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.    |    . -.++..+-.++     ...
T Consensus       185 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----G----a-~~vi~~~~~~~~~~~~~~~  255 (371)
T 1f8f_A          185 ALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----G----A-THVINSKTQDPVAAIKEIT  255 (371)
T ss_dssp             TTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----T----C-SEEEETTTSCHHHHHHHHT
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C----C-CEEecCCccCHHHHHHHhc
Confidence            34556788999999986 88888887764233699999999988888753    1    1 11222211111     011


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ++.+|+|+-...     . ...++.+.+.|++||++++...
T Consensus       256 ~gg~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          256 DGGVNFALESTG-----S-PEILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             TSCEEEEEECSC-----C-HHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCCCcEEEECCC-----C-HHHHHHHHHHHhcCCEEEEeCC
Confidence            236999875432     1 3458889999999999987653

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.03  E-value=0.051  Score=50.01  Aligned_cols=103  Identities=14%  Similarity=0.128  Sum_probs=69.8

Q ss_pred             hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CC-----C-
Q 019957          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-----F-  233 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-----~-  233 (333)
                      ....++.+||-+|+|. |.++..+++......|+++|.++..++.+++.          +.+.+...-.+ +.     . 
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l----------Ga~~i~~~~~~~~~~~v~~~t  250 (398)
T 1kol_A          181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----------GFEIADLSLDTPLHEQIAALL  250 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----------TCEEEETTSSSCHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc----------CCcEEccCCcchHHHHHHHHh
Confidence            4556788999999876 88888888875333799999999988888652          22333221111 00     0 


Q ss_pred             CCCCcceEEecccc---------ccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          234 ASGFVDAVHAGAAL---------HCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       234 ~~~~fD~V~~~~vl---------~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      ....+|+|+-.-.-         .|.+++...++.+.+.|++||++++..
T Consensus       251 ~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          251 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             CCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence            12369999864332         234456667899999999999998754

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.99  E-value=0.038  Score=49.88  Aligned_cols=95  Identities=14%  Similarity=0.128  Sum_probs=65.6

Q ss_pred             hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcce
Q 019957          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA  240 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~  240 (333)
                      ....++.+||-+|+|. |.++..+++.. +.+|+++|.++..++.+++.    |    .. .++ .+...+.   +.+|+
T Consensus       172 ~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l----G----a~-~v~-~~~~~~~---~~~D~  237 (348)
T 3two_A          172 SKVTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSM----G----VK-HFY-TDPKQCK---EELDF  237 (348)
T ss_dssp             TTCCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHT----T----CS-EEE-SSGGGCC---SCEEE
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhc----C----CC-eec-CCHHHHh---cCCCE
Confidence            3566788999999986 88888888774 44999999999888877652    1    11 222 3333322   27999


Q ss_pred             EEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      |+-...-.      ..+..+.+.|+++|++++....
T Consensus       238 vid~~g~~------~~~~~~~~~l~~~G~iv~~G~~  267 (348)
T 3two_A          238 IISTIPTH------YDLKDYLKLLTYNGDLALVGLP  267 (348)
T ss_dssp             EEECCCSC------CCHHHHHTTEEEEEEEEECCCC
T ss_pred             EEECCCcH------HHHHHHHHHHhcCCEEEEECCC
Confidence            98543211      1377888999999999887543

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=95.99  E-value=0.53  Score=42.23  Aligned_cols=160  Identities=13%  Similarity=0.167  Sum_probs=95.6

Q ss_pred             HHHHHhhccc-CCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcC--------------c----
Q 019957          156 KMAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDN--------------T----  215 (333)
Q Consensus       156 ~~~~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~--------------~----  215 (333)
                      ..+.+++... +...|+-+|||.=.....+...+ +...++=+|. |+.++.=++.+...+              .    
T Consensus        79 ~~v~~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~  157 (334)
T 3iei_A           79 QLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDG  157 (334)
T ss_dssp             HHHHHHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCT
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhccccccccccccc
Confidence            4445555543 45689999999987777777642 3456777775 444443223333210              0    


Q ss_pred             --CCCCCeEEEEccCCCCC----------CCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCC
Q 019957          216 --ILTSNLALVRADVCRLP----------FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSS  281 (333)
Q Consensus       216 --~~~~~i~~~~~d~~~lp----------~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~  281 (333)
                        ....+..++.+|+.+..          +....-=++++-.++.+++..  ..+|+.+.+.. |+|.+++.++..+.  
T Consensus       158 ~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~--  234 (334)
T 3iei_A          158 HILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMG--  234 (334)
T ss_dssp             TEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTT--
T ss_pred             ccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCC--
Confidence              01357789999987631          223334467778888887643  46677777665 55666666665432  


Q ss_pred             cchhhHHHHHhh-------hccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957          282 TSLTGRVLRERI-------LQNYNYLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       282 ~~~~~~~~~~~~-------~~~~~~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                      .++ ++.+....       .....|.+.++..+.|.++||+.+...
T Consensus       235 d~f-g~~M~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~  279 (334)
T 3iei_A          235 DRF-GQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAV  279 (334)
T ss_dssp             SHH-HHHHHHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEE
T ss_pred             CHH-HHHHHHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceee
Confidence            222 33222211       133456788999999999999987643

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.92  E-value=0.035  Score=51.24  Aligned_cols=105  Identities=14%  Similarity=0.100  Sum_probs=68.1

Q ss_pred             HhhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-C-----
Q 019957          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P-----  232 (333)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p-----  232 (333)
                      ......++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.          +.+.+...-.+. .     
T Consensus       179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----------Ga~~i~~~~~~~~~~~~~~  248 (398)
T 2dph_A          179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA----------GFETIDLRNSAPLRDQIDQ  248 (398)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT----------TCEEEETTSSSCHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----------CCcEEcCCCcchHHHHHHH
Confidence            344566788999999987 88888888764233899999999888877641          223332221121 0     


Q ss_pred             C-CCCCcceEEeccccccC--------CChHHHHHHHHHhccCCcEEEEEE
Q 019957          233 F-ASGFVDAVHAGAALHCW--------PSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       233 ~-~~~~fD~V~~~~vl~h~--------~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      . ....+|+|+-.-.-...        .++...++++.+.|++||++++..
T Consensus       249 ~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G  299 (398)
T 2dph_A          249 ILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG  299 (398)
T ss_dssp             HHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred             HhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence            0 12369999864432210        023356889999999999988754

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=95.87  E-value=0.07  Score=48.00  Aligned_cols=99  Identities=16%  Similarity=0.119  Sum_probs=61.4

Q ss_pred             hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC------CC
Q 019957          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FA  234 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~  234 (333)
                      ....++.+||=+|+|. |.++..+++.....+|+++|.+++-++.+++.         ..-.++...-.+..      ..
T Consensus       159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~---------Ga~~~i~~~~~~~~~~v~~~t~  229 (348)
T 4eez_A          159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI---------GADVTINSGDVNPVDEIKKITG  229 (348)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT---------TCSEEEEC-CCCHHHHHHHHTT
T ss_pred             cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc---------CCeEEEeCCCCCHHHHhhhhcC
Confidence            3456788999999987 45555555543356999999999888777662         11122221111110      11


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ...+|.++....      -...+....+.|+++|.+++...
T Consensus       230 g~g~d~~~~~~~------~~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          230 GLGVQSAIVCAV------ARIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             SSCEEEEEECCS------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCCceEEEEecc------CcchhheeheeecCCceEEEEec
Confidence            234666654322      24568888999999999887653

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.81  E-value=0.026  Score=52.36  Aligned_cols=64  Identities=11%  Similarity=0.104  Sum_probs=49.9

Q ss_pred             cCCCeEEEEcCCcCHHHHHHH-HhCCC-CeEEEEeCCHHHHHHHHHHHHh--cCcCCC-CCeEEEEccCCC
Q 019957          165 AQGGLLVDVSCGSGLFSRKFA-KSGTY-SGVVALDFSENMLRQCYDFIKQ--DNTILT-SNLALVRADVCR  230 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~-~~~~~-~~v~g~D~s~~~~~~a~~~~~~--~~~~~~-~~i~~~~~d~~~  230 (333)
                      .++..++|||++.|.++..++ +.++. .+|+++|+++...+..++++..  ++.  . .++.++..-+.+
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~--~~~~v~~~~~al~~  293 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTN--FASRITVHGCGAGE  293 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTST--TGGGEEEECSEECS
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccC--CCCCEEEEEeEEEC
Confidence            567899999999999999887 45543 6999999999999999998876  221  3 577776655543

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.53  E-value=0.093  Score=47.64  Aligned_cols=99  Identities=14%  Similarity=0.076  Sum_probs=66.0

Q ss_pred             hhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC------C
Q 019957          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------F  233 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~  233 (333)
                      .....++.+||-+|+|. |.++..+++.. +.+|+++|.++..++.+++.    |    . -.++..+..++.      .
T Consensus       184 ~~~~~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l----G----a-~~vi~~~~~~~~~~v~~~~  253 (363)
T 3uog_A          184 KGHLRAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFAL----G----A-DHGINRLEEDWVERVYALT  253 (363)
T ss_dssp             TTCCCTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH----T----C-SEEEETTTSCHHHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHHc----C----C-CEEEcCCcccHHHHHHHHh
Confidence            34556788999999876 77887887764 44999999999888887663    1    1 122222111110      1


Q ss_pred             CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ....+|+|+-...       ...+..+.+.|++||.+++....
T Consensus       254 ~g~g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~G~~  289 (363)
T 3uog_A          254 GDRGADHILEIAG-------GAGLGQSLKAVAPDGRISVIGVL  289 (363)
T ss_dssp             TTCCEEEEEEETT-------SSCHHHHHHHEEEEEEEEEECCC
T ss_pred             CCCCceEEEECCC-------hHHHHHHHHHhhcCCEEEEEecC
Confidence            1337999986543       12377788999999999887543

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=95.43  E-value=0.045  Score=54.33  Aligned_cols=127  Identities=18%  Similarity=0.168  Sum_probs=79.5

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhC-------CC-----CeEEEEeC---CHHHHHHHH-----------HHHHhcCc----
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSG-------TY-----SGVVALDF---SENMLRQCY-----------DFIKQDNT----  215 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~-------~~-----~~v~g~D~---s~~~~~~a~-----------~~~~~~~~----  215 (333)
                      +.-+|||+|.|+|.+...+.+..       |.     .+++.+|.   +.+.+..+-           +.+.....    
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            34689999999998776654431       11     46899998   555554432           22222110    


Q ss_pred             ------C-CCCCeEEEEccCCC-CC-CC---CCCcceEEeccccccCCCh----HHHHHHHHHhccCCcEEEEEEecccC
Q 019957          216 ------I-LTSNLALVRADVCR-LP-FA---SGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLRYT  279 (333)
Q Consensus       216 ------~-~~~~i~~~~~d~~~-lp-~~---~~~fD~V~~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~~~  279 (333)
                            . ....++++.+|+.+ ++ +.   +..+|+++....--. .+|    ..++..+.++++|||.+...+     
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~-~np~~w~~~~~~~l~~~~~~g~~~~t~~-----  211 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPA-KNPDMWNEQLFNAMARMTRPGGTFSTFT-----  211 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC---CCTTCSHHHHHHHHHHEEEEEEEEESC-----
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCC-CChhhhhHHHHHHHHHHhCCCCEEEecc-----
Confidence                  0 01256778888843 33 11   468999998553221 122    578999999999999865422     


Q ss_pred             CCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957          280 SSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~  319 (333)
                                           ....+++.+.++||.+.+.
T Consensus       212 ---------------------~~~~vr~~l~~aGf~~~~~  230 (689)
T 3pvc_A          212 ---------------------AAGFVRRGLQQAGFNVTKV  230 (689)
T ss_dssp             ---------------------CCHHHHHHHHHTTCEEEEE
T ss_pred             ---------------------CcHHHHHHHHhCCeEEEec
Confidence                                 1247888899999987764

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.37  E-value=0.05  Score=44.65  Aligned_cols=94  Identities=20%  Similarity=0.130  Sum_probs=59.8

Q ss_pred             hcccCCCeEEEEcC--CcCHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC------
Q 019957          162 FKSAQGGLLVDVSC--GSGLFSRKFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (333)
Q Consensus       162 l~~~~~~~vLDiGc--G~G~~~~~l~~-~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (333)
                      ....++.+||.+|+  |.|..+..+.+ .+.  +|+++|.+++.++.+++    .+    .. ..+  |..+..      
T Consensus        34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~--~V~~~~~~~~~~~~~~~----~g----~~-~~~--d~~~~~~~~~~~  100 (198)
T 1pqw_A           34 GRLSPGERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDAKREMLSR----LG----VE-YVG--DSRSVDFADEIL  100 (198)
T ss_dssp             SCCCTTCEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHT----TC----CS-EEE--ETTCSTHHHHHH
T ss_pred             hCCCCCCEEEEeeCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHH----cC----CC-EEe--eCCcHHHHHHHH
Confidence            34567889999994  44666555554 454  89999999887766543    12    11 112  332211      


Q ss_pred             --CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          233 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                        ...+.+|+|+....       ...++.+.+.|++||++++...
T Consensus       101 ~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          101 ELTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             HHTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEECSC
T ss_pred             HHhCCCCCeEEEECCc-------hHHHHHHHHHhccCCEEEEEcC
Confidence              11246999986542       2457889999999999987654

>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=95.35  E-value=0.0049  Score=46.71  Aligned_cols=28  Identities=14%  Similarity=0.428  Sum_probs=24.3

Q ss_pred             ccccCceeeCCCCccccCcCCceeeecc
Q 019957           82 AIYRSGFKCRKCDKTYSSKDNYLDLTVI  109 (333)
Q Consensus        82 ~~~~~~~~C~~C~~~~~~~~g~~~~~~~  109 (333)
                      .+.+|.+.|++||+.|++++|+++.+..
T Consensus        94 ~V~EG~L~Cp~cgr~ypI~~GIPNm~~~  121 (125)
T 3q87_A           94 DVVEGSLRCDMCGLIYPIKGSIVETVDT  121 (125)
T ss_dssp             EEEEEEEEETTTCCEEEEETTEEECSSC
T ss_pred             EEEEEEEECCCCCCEeeccCCcccHHHh
Confidence            3556899999999999999999998754

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.31  E-value=0.29  Score=44.53  Aligned_cols=102  Identities=20%  Similarity=0.238  Sum_probs=67.6

Q ss_pred             HhhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-----C-
Q 019957          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----P-  232 (333)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p-  232 (333)
                      ......++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.    |    -. ..+...-.++     . 
T Consensus       176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----G----a~-~vi~~~~~~~~~~i~~~  246 (370)
T 4ej6_A          176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----G----AT-ATVDPSAGDVVEAIAGP  246 (370)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----T----CS-EEECTTSSCHHHHHHST
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----C----CC-EEECCCCcCHHHHHHhh
Confidence            344566788999999976 78888888875334899999999988887763    1    11 1221111110     0 


Q ss_pred             --CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          233 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                        ...+.+|+|+-.-.     . ...++.+.+.|++||++++....
T Consensus       247 ~~~~~gg~Dvvid~~G-----~-~~~~~~~~~~l~~~G~vv~~G~~  286 (370)
T 4ej6_A          247 VGLVPGGVDVVIECAG-----V-AETVKQSTRLAKAGGTVVILGVL  286 (370)
T ss_dssp             TSSSTTCEEEEEECSC-----C-HHHHHHHHHHEEEEEEEEECSCC
T ss_pred             hhccCCCCCEEEECCC-----C-HHHHHHHHHHhccCCEEEEEecc
Confidence              22347999985422     1 34688899999999999886543

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=95.25  E-value=0.086  Score=45.50  Aligned_cols=107  Identities=17%  Similarity=0.214  Sum_probs=69.8

Q ss_pred             CCeEEEEcCCcCHHHHHHHHh-------CCCCeEEEEe-----CCH----------------------HHHHHHHH---H
Q 019957          167 GGLLVDVSCGSGLFSRKFAKS-------GTYSGVVALD-----FSE----------------------NMLRQCYD---F  209 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~-------~~~~~v~g~D-----~s~----------------------~~~~~a~~---~  209 (333)
                      ++.|+|+|+-.|..+..++..       ++..+++++|     +.+                      +.++...+   +
T Consensus        70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~  149 (257)
T 3tos_A           70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC  149 (257)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred             CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence            459999999999877775542       3456899999     321                      11111111   1


Q ss_pred             HHhcCcCCCCCeEEEEccCCC-CC-----CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          210 IKQDNTILTSNLALVRADVCR-LP-----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       210 ~~~~~~~~~~~i~~~~~d~~~-lp-----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      .+..+. ...++.++.|++.+ +|     .+..+||+|+.-.-.  ...-...++.+...|+|||++++-+.+
T Consensus       150 ~~~~g~-~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvIv~DD~~  219 (257)
T 3tos_A          150 SDFFGH-VTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIVAFDELD  219 (257)
T ss_dssp             TSTTTT-SCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred             hhhcCC-CCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            112232 13789999999965 33     234579999986632  223356788999999999999997653

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.23  E-value=0.087  Score=47.69  Aligned_cols=100  Identities=15%  Similarity=0.135  Sum_probs=65.6

Q ss_pred             hhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc---CCC----CC
Q 019957          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD---VCR----LP  232 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d---~~~----lp  232 (333)
                      .....++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.    |    .. .++..+   ..+    +.
T Consensus       166 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----G----a~-~vi~~~~~~~~~~~~~i~  236 (356)
T 1pl8_A          166 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----G----AD-LVLQISKESPQEIARKVE  236 (356)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T----CS-EEEECSSCCHHHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----C----CC-EEEcCcccccchHHHHHH
Confidence            34566788999999986 88888888875333899999999888887652    1    11 222211   001    10


Q ss_pred             -CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                       ...+.+|+|+-.-.     . ...+....+.|++||++++...
T Consensus       237 ~~~~~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          237 GQLGCKPEVTIECTG-----A-EASIQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             HHHTSCCSEEEECSC-----C-HHHHHHHHHHSCTTCEEEECSC
T ss_pred             HHhCCCCCEEEECCC-----C-hHHHHHHHHHhcCCCEEEEEec
Confidence             00146899875432     2 3457888999999999987653

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.19  E-value=0.045  Score=49.04  Aligned_cols=62  Identities=10%  Similarity=0.068  Sum_probs=50.9

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 019957          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD  213 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~  213 (333)
                      +.+..+++.+..... .++..|||.-||+|..+....+.+.  +++|+|+++...+.+++++...
T Consensus       236 ~kp~~l~~~~i~~~~-~~~~~VlDpF~GsGtt~~aa~~~gr--~~ig~e~~~~~~~~~~~r~~~~  297 (323)
T 1boo_A          236 RFPAKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLDN  297 (323)
T ss_dssp             CCCTHHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSCS
T ss_pred             cCCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHhc
Confidence            445666766666553 4678999999999999999998876  9999999999999999987654

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=95.19  E-value=0.046  Score=54.09  Aligned_cols=126  Identities=16%  Similarity=0.096  Sum_probs=78.4

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhC-------C-----CCeEEEEeC---CHHHHHHHHH-----------HHHhcCcC----
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSG-------T-----YSGVVALDF---SENMLRQCYD-----------FIKQDNTI----  216 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~-------~-----~~~v~g~D~---s~~~~~~a~~-----------~~~~~~~~----  216 (333)
                      .-+|||+|-|+|.+.....+..       |     ...++++|.   +.+.+..+-.           ........    
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            4589999999998766554331       1     135899998   7776664332           11111100    


Q ss_pred             -------CCCCeEEEEccCCC-CC-CC---CCCcceEEeccccccCCCh----HHHHHHHHHhccCCcEEEEEEecccCC
Q 019957          217 -------LTSNLALVRADVCR-LP-FA---SGFVDAVHAGAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLRYTS  280 (333)
Q Consensus       217 -------~~~~i~~~~~d~~~-lp-~~---~~~fD~V~~~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~~~~  280 (333)
                             ....+++..+|+.+ ++ +.   +..||+|+....- .-.+|    ..+++.+.++++|||.+....      
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~-p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------  219 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFA-PAKNPDMWTQNLFNAMARLARPGGTLATFT------  219 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSC-GGGCGGGSCHHHHHHHHHHEEEEEEEEESC------
T ss_pred             eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCC-CcCChhhhhHHHHHHHHHHhCCCCEEEecc------
Confidence                   01235566777743 22 11   4679999885421 11233    578999999999999876422      


Q ss_pred             CcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957          281 STSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~  319 (333)
                                          ....+++.+.++||.+.+.
T Consensus       220 --------------------~~~~vr~~L~~aGf~v~~~  238 (676)
T 3ps9_A          220 --------------------SAGFVRRGLQDAGFTMQKR  238 (676)
T ss_dssp             --------------------CCHHHHHHHHHHTCEEEEE
T ss_pred             --------------------CcHHHHHHHHhCCeEEEec
Confidence                                1146788899999987653

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.15  E-value=0.066  Score=48.38  Aligned_cols=101  Identities=13%  Similarity=0.164  Sum_probs=66.9

Q ss_pred             HhhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC------
Q 019957          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (333)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (333)
                      +.....++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.    |    . -.++..+-.++.      
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----G----a-~~vi~~~~~~~~~~v~~~  230 (352)
T 3fpc_A          160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----G----A-TDIINYKNGDIVEQILKA  230 (352)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----T----C-CEEECGGGSCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----C----C-ceEEcCCCcCHHHHHHHH
Confidence            445566788999999886 88888888875333899999999888888763    1    1 122221111110      


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      .....+|+|+-...     . ...+..+.+.|++||+++....
T Consensus       231 t~g~g~D~v~d~~g-----~-~~~~~~~~~~l~~~G~~v~~G~  267 (352)
T 3fpc_A          231 TDGKGVDKVVIAGG-----D-VHTFAQAVKMIKPGSDIGNVNY  267 (352)
T ss_dssp             TTTCCEEEEEECSS-----C-TTHHHHHHHHEEEEEEEEECCC
T ss_pred             cCCCCCCEEEECCC-----C-hHHHHHHHHHHhcCCEEEEecc
Confidence            11236999985432     1 2357889999999999987653

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=95.15  E-value=0.42  Score=42.73  Aligned_cols=126  Identities=13%  Similarity=0.085  Sum_probs=77.3

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC-CCCcceEEecc
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGA  245 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~  245 (333)
                      +.++||+.||.|.+...+...|. ..+.++|+++.+++..+.+...     .   .  .+|+.++... -..+|+|+...
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~-~~v~~~e~d~~a~~t~~~N~~~-----~---~--~~Di~~~~~~~~~~~D~l~~gp   79 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGE-----K---P--EGDITQVNEKTIPDHDILCAGF   79 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSC-----C---C--BSCGGGSCGGGSCCCSEEEEEC
T ss_pred             CCcEEEECCCcCHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHcCC-----C---C--cCCHHHcCHhhCCCCCEEEECC
Confidence            46899999999999999998873 4688999999999888887532     1   1  5777665321 23589999753


Q ss_pred             ccccC---------CChH-HHHH---HHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhC
Q 019957          246 ALHCW---------PSPS-NAVA---EISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC  312 (333)
Q Consensus       246 vl~h~---------~d~~-~~l~---~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~a  312 (333)
                      -...+         .|+. .++.   ++.+.++|.  +++.+.....      ..        +...-+.+.+...|++.
T Consensus        80 PCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~--~~~~ENV~gl------~~--------~~~~~~~~~i~~~l~~~  143 (327)
T 2c7p_A           80 PCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPK--VVFMENVKNF------AS--------HDNGNTLEVVKNTMNEL  143 (327)
T ss_dssp             CCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS--EEEEEEEGGG------GT--------GGGGHHHHHHHHHHHHT
T ss_pred             CCCCcchhcccCCCcchhhHHHHHHHHHHHhccCc--EEEEeCcHHH------Hh--------ccccHHHHHHHHHHHhC
Confidence            32222         2332 1223   333445775  3343432210      00        00011246788889999


Q ss_pred             CCcEEEE
Q 019957          313 GLTNYTS  319 (333)
Q Consensus       313 Gf~~v~~  319 (333)
                      |+.+...
T Consensus       144 GY~v~~~  150 (327)
T 2c7p_A          144 DYSFHAK  150 (327)
T ss_dssp             TBCCEEE
T ss_pred             CCEEEEE
Confidence            9976543

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.14  E-value=0.061  Score=48.09  Aligned_cols=62  Identities=18%  Similarity=0.324  Sum_probs=49.7

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCH---HHHHHHHHHHHhc
Q 019957          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSE---NMLRQCYDFIKQD  213 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~---~~~~~a~~~~~~~  213 (333)
                      +.+..+++.+..... .++..|||.-||+|..+....+.+.  +++|+|+++   ...+.+++++...
T Consensus       226 ~kp~~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~~r--~~ig~e~~~~~~~~~~~~~~Rl~~~  290 (319)
T 1eg2_A          226 QKPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGR--NSICTDAAPVFKEYYQKQLTFLQDD  290 (319)
T ss_dssp             CCCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTC--EEEEEESSTHHHHHHHHHHHHC---
T ss_pred             CCCHHHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHHcCC--cEEEEECCccHHHHHHHHHHHHHHc
Confidence            355667777766654 4678999999999999999999876  999999999   9999999987653

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.11  E-value=0.31  Score=44.07  Aligned_cols=104  Identities=13%  Similarity=0.113  Sum_probs=68.5

Q ss_pred             HhhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc-----cCC-CC-
Q 019957          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-----DVC-RL-  231 (333)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-----d~~-~l-  231 (333)
                      +.....++.+||-+|+|. |.++..+++......|+++|.++..++.+++. ..      .-+.+...     |+. .+ 
T Consensus       173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~------~~~~~~~~~~~~~~~~~~v~  245 (363)
T 3m6i_A          173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP------EVVTHKVERLSAEESAKKIV  245 (363)
T ss_dssp             HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT------TCEEEECCSCCHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch------hcccccccccchHHHHHHHH
Confidence            344566788999999976 88888888875233499999999999988875 21      12222211     110 00 


Q ss_pred             -CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          232 -PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       232 -p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                       ......+|+|+-.-.     . ...+..+.+.|++||++++....
T Consensus       246 ~~t~g~g~Dvvid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~~  285 (363)
T 3m6i_A          246 ESFGGIEPAVALECTG-----V-ESSIAAAIWAVKFGGKVFVIGVG  285 (363)
T ss_dssp             HHTSSCCCSEEEECSC-----C-HHHHHHHHHHSCTTCEEEECCCC
T ss_pred             HHhCCCCCCEEEECCC-----C-hHHHHHHHHHhcCCCEEEEEccC
Confidence             012347999985432     2 34578899999999999886543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.03  E-value=0.08  Score=48.27  Aligned_cols=93  Identities=18%  Similarity=0.212  Sum_probs=62.4

Q ss_pred             cccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc---c-CCCCCCCCCC
Q 019957          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA---D-VCRLPFASGF  237 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~---d-~~~lp~~~~~  237 (333)
                      ...++.+||-+|+|. |.++..+++.. +.+|+++|.++..++.+++.    |   . . .++..   + ...+   .+.
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~l----G---a-~-~vi~~~~~~~~~~~---~~g  257 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKAL----G---A-D-EVVNSRNADEMAAH---LKS  257 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH----T---C-S-EEEETTCHHHHHTT---TTC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----C---C-c-EEeccccHHHHHHh---hcC
Confidence            556788999999986 78888887764 44899999999888887752    1   1 1 12211   1 1111   147


Q ss_pred             cceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      +|+|+-...-.      ..++.+.+.|+++|+++...
T Consensus       258 ~Dvvid~~g~~------~~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          258 FDFILNTVAAP------HNLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             EEEEEECCSSC------CCHHHHHTTEEEEEEEEECC
T ss_pred             CCEEEECCCCH------HHHHHHHHHhccCCEEEEec
Confidence            99998543321      13677889999999988754

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.02  E-value=0.23  Score=44.68  Aligned_cols=99  Identities=16%  Similarity=0.116  Sum_probs=64.8

Q ss_pred             hhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC-CCCC------
Q 019957          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLP------  232 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp------  232 (333)
                      .....++.+||-+|+|. |.++..+++.. +.+|+++|.++..++.+++.    |    .. .++..+- .+..      
T Consensus       163 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l----G----a~-~~~~~~~~~~~~~~i~~~  232 (352)
T 1e3j_A          163 RAGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNC----G----AD-VTLVVDPAKEEESSIIER  232 (352)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT----T----CS-EEEECCTTTSCHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh----C----CC-EEEcCcccccHHHHHHHH
Confidence            34556788999999875 77777777764 34799999999988887652    2    11 2222110 1110      


Q ss_pred             CC---CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          233 FA---SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 ~~---~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ..   .+.+|+|+-...     . ...++...+.|+++|++++...
T Consensus       233 ~~~~~g~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~  272 (352)
T 1e3j_A          233 IRSAIGDLPNVTIDCSG-----N-EKCITIGINITRTGGTLMLVGM  272 (352)
T ss_dssp             HHHHSSSCCSEEEECSC-----C-HHHHHHHHHHSCTTCEEEECSC
T ss_pred             hccccCCCCCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEec
Confidence            01   246999885432     1 3457888999999999987653

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=94.99  E-value=0.21  Score=44.80  Aligned_cols=95  Identities=22%  Similarity=0.243  Sum_probs=62.9

Q ss_pred             cccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC------C
Q 019957          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA------S  235 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~------~  235 (333)
                      ...++.+||-+|+|. |..+..+++.. +.+|+++|.++..++.+++.    |   . . .+  .|..+..+.      .
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~l----G---a-~-~~--~d~~~~~~~~~~~~~~  228 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKEL----G---A-D-LV--VNPLKEDAAKFMKEKV  228 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT----T---C-S-EE--ECTTTSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHC----C---C-C-EE--ecCCCccHHHHHHHHh
Confidence            456788999999864 77777777664 34999999999888877641    1   1 1 11  132211110      0


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      +.+|+|+....     . ...++.+.+.|+++|++++...
T Consensus       229 ~~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g~  262 (339)
T 1rjw_A          229 GGVHAAVVTAV-----S-KPAFQSAYNSIRRGGACVLVGL  262 (339)
T ss_dssp             SSEEEEEESSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCEEEECCC-----C-HHHHHHHHHHhhcCCEEEEecc
Confidence            46898876432     1 3457888999999999887543

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=94.93  E-value=0.21  Score=45.11  Aligned_cols=90  Identities=13%  Similarity=0.107  Sum_probs=59.5

Q ss_pred             CeEEEEcCCc-CHHH-HHHH-HhCCCCe-EEEEeCCHH---HHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC-----C
Q 019957          168 GLLVDVSCGS-GLFS-RKFA-KSGTYSG-VVALDFSEN---MLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-----S  235 (333)
Q Consensus       168 ~~vLDiGcG~-G~~~-~~l~-~~~~~~~-v~g~D~s~~---~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-----~  235 (333)
                      .+||-+|+|. |.++ ..++ +.. +.+ |+++|.+++   .++.+++.          +.+.+  |..+..+.     .
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~l----------Ga~~v--~~~~~~~~~i~~~~  240 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEEL----------DATYV--DSRQTPVEDVPDVY  240 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHHT----------TCEEE--ETTTSCGGGHHHHS
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHHc----------CCccc--CCCccCHHHHHHhC
Confidence            8999999865 7777 7777 653 335 999999887   77777642          22333  33221111     2


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      +.+|+|+-.-.     . ...++.+.+.|+++|+++.....
T Consensus       241 gg~Dvvid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~~  275 (357)
T 2b5w_A          241 EQMDFIYEATG-----F-PKHAIQSVQALAPNGVGALLGVP  275 (357)
T ss_dssp             CCEEEEEECSC-----C-HHHHHHHHHHEEEEEEEEECCCC
T ss_pred             CCCCEEEECCC-----C-hHHHHHHHHHHhcCCEEEEEeCC
Confidence            36898875322     2 24578899999999999876543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=94.70  E-value=0.11  Score=47.42  Aligned_cols=101  Identities=17%  Similarity=0.159  Sum_probs=65.7

Q ss_pred             HhhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc--CCCC-----
Q 019957          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD--VCRL-----  231 (333)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d--~~~l-----  231 (333)
                      +.....++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.    |     --.++...  -.++     
T Consensus       187 ~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l----G-----a~~vi~~~~~~~~~~~~i~  257 (378)
T 3uko_A          187 NTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF----G-----VNEFVNPKDHDKPIQEVIV  257 (378)
T ss_dssp             TTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT----T-----CCEEECGGGCSSCHHHHHH
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C-----CcEEEccccCchhHHHHHH
Confidence            344556788999999975 88888888764234899999999888877652    1     11222211  0111     


Q ss_pred             CCCCCCcceEEeccccccCCChHHHHHHHHHhccCC-cEEEEEEe
Q 019957          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~  275 (333)
                      ...++.+|+|+-...     . ...++.+.+.|++| |++++...
T Consensus       258 ~~~~gg~D~vid~~g-----~-~~~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          258 DLTDGGVDYSFECIG-----N-VSVMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             HHTTSCBSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             HhcCCCCCEEEECCC-----C-HHHHHHHHHHhhccCCEEEEEcc
Confidence            011347999985432     2 34588899999997 99988654

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=94.67  E-value=0.055  Score=48.09  Aligned_cols=93  Identities=10%  Similarity=0.034  Sum_probs=61.0

Q ss_pred             HhhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCc
Q 019957          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFV  238 (333)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~f  238 (333)
                      +.....++.+||-+|+|. |.++..+++.. +.+|++++ ++..++.+++.          +.+.+..|.+.+   .+.+
T Consensus       136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~l----------Ga~~v~~d~~~v---~~g~  200 (315)
T 3goh_A          136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAKR----------GVRHLYREPSQV---TQKY  200 (315)
T ss_dssp             TTSCCCSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHHH----------TEEEEESSGGGC---CSCE
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHHc----------CCCEEEcCHHHh---CCCc
Confidence            344556789999999975 88888887764 34999999 88888887663          122222232233   4679


Q ss_pred             ceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      |+|+-.-.     .  ..+....+.|+++|+++...
T Consensus       201 Dvv~d~~g-----~--~~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          201 FAIFDAVN-----S--QNAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             EEEECC--------------TTGGGEEEEEEEEEEC
T ss_pred             cEEEECCC-----c--hhHHHHHHHhcCCCEEEEEe
Confidence            99985332     1  12356788999999998863

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=94.66  E-value=0.18  Score=44.99  Aligned_cols=96  Identities=18%  Similarity=0.199  Sum_probs=63.1

Q ss_pred             cccCCCeEEEEcC-C-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC------CC
Q 019957          163 KSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FA  234 (333)
Q Consensus       163 ~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~  234 (333)
                      ...++.+||-+|+ | .|..+..+++.. +.+|+++|.++..++.+++.    |     .-..+..+-.++.      ..
T Consensus       145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~----g-----a~~~~~~~~~~~~~~~~~~~~  214 (334)
T 3qwb_A          145 HVKKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKEY----G-----AEYLINASKEDILRQVLKFTN  214 (334)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T-----CSEEEETTTSCHHHHHHHHTT
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----C-----CcEEEeCCCchHHHHHHHHhC
Confidence            4567889999994 3 477777777764 44999999999888877652    1     1122222111110      11


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ...+|+|+....-       ..++.+.+.|++||++++...
T Consensus       215 ~~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G~  248 (334)
T 3qwb_A          215 GKGVDASFDSVGK-------DTFEISLAALKRKGVFVSFGN  248 (334)
T ss_dssp             TSCEEEEEECCGG-------GGHHHHHHHEEEEEEEEECCC
T ss_pred             CCCceEEEECCCh-------HHHHHHHHHhccCCEEEEEcC
Confidence            3469999865432       347788899999999988643

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=94.55  E-value=0.19  Score=45.25  Aligned_cols=97  Identities=15%  Similarity=0.181  Sum_probs=61.8

Q ss_pred             hcccCCCeEEEEcCC--cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-------
Q 019957          162 FKSAQGGLLVDVSCG--SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------  232 (333)
Q Consensus       162 l~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------  232 (333)
                      ....++.+||-+|+|  .|..+..+++...+.+|+++|.++..++.+++.    |    .. .++  |..+..       
T Consensus       166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~----g----~~-~~~--~~~~~~~~~~~~~  234 (347)
T 1jvb_A          166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----G----AD-YVI--NASMQDPLAEIRR  234 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----T----CS-EEE--ETTTSCHHHHHHH
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----C----CC-EEe--cCCCccHHHHHHH
Confidence            445678899999998  466655555542123899999999888877652    1    11 122  221111       


Q ss_pred             CCC-CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          233 FAS-GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 ~~~-~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ... +.+|+|+....      ....++.+.+.|+++|++++...
T Consensus       235 ~~~~~~~d~vi~~~g------~~~~~~~~~~~l~~~G~iv~~g~  272 (347)
T 1jvb_A          235 ITESKGVDAVIDLNN------SEKTLSVYPKALAKQGKYVMVGL  272 (347)
T ss_dssp             HTTTSCEEEEEESCC------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred             HhcCCCceEEEECCC------CHHHHHHHHHHHhcCCEEEEECC
Confidence            111 47999886543      13457888899999999887543

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=94.53  E-value=0.13  Score=45.93  Aligned_cols=100  Identities=10%  Similarity=-0.007  Sum_probs=64.4

Q ss_pred             HhhcccCCCeEEEEcC--CcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----
Q 019957          160 EYFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----  232 (333)
Q Consensus       160 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----  232 (333)
                      +.....++.+||-+|+  |.|..+..+++.. +.+|+++|.++..++.+.+.+   |     .-..+...-.++.     
T Consensus       143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~~---g-----~~~~~~~~~~~~~~~~~~  213 (336)
T 4b7c_A          143 DVGQPKNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEEL---G-----FDGAIDYKNEDLAAGLKR  213 (336)
T ss_dssp             HTTCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTT---C-----CSEEEETTTSCHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHc---C-----CCEEEECCCHHHHHHHHH
Confidence            4455677889999998  3477777777664 349999999998877773321   1     1112211111110     


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ...+.+|+|+....       ...+..+.+.|++||++++...
T Consensus       214 ~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          214 ECPKGIDVFFDNVG-------GEILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             HCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECCC
T ss_pred             hcCCCceEEEECCC-------cchHHHHHHHHhhCCEEEEEee
Confidence            11246999886443       2368889999999999988643

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=94.48  E-value=0.011  Score=41.47  Aligned_cols=31  Identities=23%  Similarity=0.623  Sum_probs=23.6

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      ..+.||.||..+.....         .+.+.|+.|++.|.
T Consensus        26 ~~y~Cp~CG~~~v~r~a---------tGiW~C~~Cg~~~a   56 (83)
T 1vq8_Z           26 EDHACPNCGEDRVDRQG---------TGIWQCSYCDYKFT   56 (83)
T ss_dssp             SCEECSSSCCEEEEEEE---------TTEEEETTTCCEEE
T ss_pred             ccCcCCCCCCcceeccC---------CCeEECCCCCCEec
Confidence            46789999997654332         37999999998863

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.47  E-value=1.3  Score=43.83  Aligned_cols=162  Identities=12%  Similarity=0.154  Sum_probs=92.5

Q ss_pred             HHHHHhhccc---CCCeEEEEcCCcCHHHHHHHHhCC--------CCeEEEEeCCHHHHHHHHHHHHhcC----------
Q 019957          156 KMAQEYFKSA---QGGLLVDVSCGSGLFSRKFAKSGT--------YSGVVALDFSENMLRQCYDFIKQDN----------  214 (333)
Q Consensus       156 ~~~~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~g~D~s~~~~~~a~~~~~~~~----------  214 (333)
                      ..+.+++...   +...|+-+|||.=.....+....+        ...++=+|. ++.++.=++.+...+          
T Consensus        94 ~~v~~fl~~~~~~~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~-p~v~~~K~~~l~~~~~l~~~~~~~~  172 (695)
T 2zwa_A           94 SRLNSIIEQTPQDKKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDY-SDLLKIKIELIKTIPELSKIIGLSE  172 (695)
T ss_dssp             HHHHHHHHHSCTTSEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEEC-HHHHHHHHHHHHHCHHHHHHTTCCS
T ss_pred             HHHHHHHhcccCCCCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECcc-HHHHHHHHHHHHcChHHHHhhcccc
Confidence            3444444433   356799999999888888876533        234455554 333333333343111          


Q ss_pred             ---cC--------CCCCeEEEEccCCCCC----------C-CCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEE
Q 019957          215 ---TI--------LTSNLALVRADVCRLP----------F-ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVF  270 (333)
Q Consensus       215 ---~~--------~~~~i~~~~~d~~~lp----------~-~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l  270 (333)
                         ..        ...+..++.+|+.+..          + ....-=++++-.+|.+++..  .++|+.+.+ + ++|.+
T Consensus       173 ~~~~~~~~~~~~~~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~  250 (695)
T 2zwa_A          173 DKDYVDDSNVDFLTTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHF  250 (695)
T ss_dssp             SCSSCSCTTCCCEECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEE
T ss_pred             ccccccccccccccCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceE
Confidence               00        0137889999997641          1 22223356677778887543  467777775 4 67777


Q ss_pred             EEEEecccCCCcchhhHHHHHhh-------hccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957          271 VGTTFLRYTSSTSLTGRVLRERI-------LQNYNYLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       271 ~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                      ++.+...+......+++......       .....+.+.++..+.|.++||+.+...
T Consensus       251 ~~~e~~~~~~~~d~f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~  307 (695)
T 2zwa_A          251 IILEQLIPKGPFEPFSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVG  307 (695)
T ss_dssp             EEEEECCTTCTTSHHHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEeecCCCCCChHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCccee
Confidence            77665543222222233222211       133456789999999999999876643

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.42  E-value=0.18  Score=44.95  Aligned_cols=95  Identities=11%  Similarity=-0.004  Sum_probs=61.7

Q ss_pred             hhcccCCCeEEEEcC--CcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CC-----
Q 019957          161 YFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-----  232 (333)
Q Consensus       161 ~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-----  232 (333)
                      .....++.+||-.|+  |.|..+..+++.. +.+|+++|.++..++.+++.    +    .. ..  .|..+ ..     
T Consensus       140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~----g----~~-~~--~d~~~~~~~~~~~  207 (333)
T 1v3u_A          140 VCGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQI----G----FD-AA--FNYKTVNSLEEAL  207 (333)
T ss_dssp             TSCCCSSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T----CS-EE--EETTSCSCHHHHH
T ss_pred             hhCCCCCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc----C----Cc-EE--EecCCHHHHHHHH
Confidence            344567889999998  4577666666553 34999999998888777431    1    11 11  23322 11     


Q ss_pred             --CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          233 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                        ...+.+|+|+.+..       ...++...+.|++||++++..
T Consensus       208 ~~~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          208 KKASPDGYDCYFDNVG-------GEFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             HHHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECC
T ss_pred             HHHhCCCCeEEEECCC-------hHHHHHHHHHHhcCCEEEEEe
Confidence              11246999886554       234788889999999998764

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=94.38  E-value=0.17  Score=45.95  Aligned_cols=100  Identities=14%  Similarity=0.107  Sum_probs=64.6

Q ss_pred             hhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC--CCC-----C
Q 019957          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRL-----P  232 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~l-----p  232 (333)
                      .....++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.    |     --.++..+-  .++     .
T Consensus       186 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----G-----a~~vi~~~~~~~~~~~~i~~  256 (373)
T 1p0f_A          186 TAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----G-----ATECLNPKDYDKPIYEVICE  256 (373)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----T-----CSEEECGGGCSSCHHHHHHH
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C-----CcEEEecccccchHHHHHHH
Confidence            34556788999999876 78888887764233799999999888877652    1     112222110  111     0


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCC-cEEEEEEe
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~  275 (333)
                      ...+.+|+|+-.-.     . ...++.+.+.|+++ |++++...
T Consensus       257 ~t~gg~Dvvid~~g-----~-~~~~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          257 KTNGGVDYAVECAG-----R-IETMMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             HTTSCBSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             HhCCCCCEEEECCC-----C-HHHHHHHHHHHhcCCCEEEEEcc
Confidence            11237999885432     1 34588899999999 99887643

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=94.38  E-value=0.17  Score=45.94  Aligned_cols=92  Identities=16%  Similarity=0.170  Sum_probs=61.8

Q ss_pred             CCCeEEEEc-CCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-----CCCCCCc
Q 019957          166 QGGLLVDVS-CGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASGFV  238 (333)
Q Consensus       166 ~~~~vLDiG-cG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~~f  238 (333)
                      ++.+||=+| +|. |.++..+++.....+|+++|.++..++.+++.    |     --.++... .++     ....+.+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l----G-----ad~vi~~~-~~~~~~v~~~~~~g~  240 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL----G-----AHHVIDHS-KPLAAEVAALGLGAP  240 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT----T-----CSEEECTT-SCHHHHHHTTCSCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc----C-----CCEEEeCC-CCHHHHHHHhcCCCc
Confidence            577899998 554 88888888862245999999999888887652    1     11122111 111     1123579


Q ss_pred             ceEEeccccccCCChHHHHHHHHHhccCCcEEEEE
Q 019957          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT  273 (333)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~  273 (333)
                      |+|+-...      -...+..+.+.|+++|++++.
T Consensus       241 Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          241 AFVFSTTH------TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEEEECSC------HHHHHHHHHHHSCTTCEEEEC
T ss_pred             eEEEECCC------chhhHHHHHHHhcCCCEEEEE
Confidence            98885432      234688899999999999876

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=94.32  E-value=0.44  Score=42.61  Aligned_cols=102  Identities=16%  Similarity=0.160  Sum_probs=65.2

Q ss_pred             HhhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC------
Q 019957          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (333)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (333)
                      ......++.+||=+|+|. |.++..+++......++++|.++..++.+++.         .-...+...-.+.+      
T Consensus       154 ~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l---------Ga~~~i~~~~~~~~~~~~~~  224 (346)
T 4a2c_A          154 HLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF---------GAMQTFNSSEMSAPQMQSVL  224 (346)
T ss_dssp             HHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---------TCSEEEETTTSCHHHHHHHH
T ss_pred             HHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc---------CCeEEEeCCCCCHHHHHHhh
Confidence            334556788999999986 66777777764345679999999988888762         12223322211111      


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      .....+|+|+....     . ...++...+.|++||.+++....
T Consensus       225 ~~~~g~d~v~d~~G-----~-~~~~~~~~~~l~~~G~~v~~g~~  262 (346)
T 4a2c_A          225 RELRFNQLILETAG-----V-PQTVELAVEIAGPHAQLALVGTL  262 (346)
T ss_dssp             GGGCSSEEEEECSC-----S-HHHHHHHHHHCCTTCEEEECCCC
T ss_pred             cccCCccccccccc-----c-cchhhhhhheecCCeEEEEEecc
Confidence            11245777764321     2 34578889999999999886543

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=94.32  E-value=0.1  Score=46.83  Aligned_cols=99  Identities=14%  Similarity=0.150  Sum_probs=62.5

Q ss_pred             HhhcccCCCeEEEEcCC--cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----
Q 019957          160 EYFKSAQGGLLVDVSCG--SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----  232 (333)
Q Consensus       160 ~~l~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----  232 (333)
                      +.....++.+||-+|+|  .|..+..+++.. +.+|+++|.++..++.+++.    |    .. ..+...-.++.     
T Consensus       138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~l----g----a~-~~~~~~~~~~~~~~~~  207 (340)
T 3gms_A          138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLRL----G----AA-YVIDTSTAPLYETVME  207 (340)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH----T----CS-EEEETTTSCHHHHHHH
T ss_pred             HhcccCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhC----C----Cc-EEEeCCcccHHHHHHH
Confidence            34456678899999987  477777777653 34999999998888877763    1    11 12221111110     


Q ss_pred             -CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                       .....+|+|+-...-       ..+.+..+.|++||++++...
T Consensus       208 ~~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          208 LTNGIGADAAIDSIGG-------PDGNELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             HTTTSCEEEEEESSCH-------HHHHHHHHTEEEEEEEEECCC
T ss_pred             HhCCCCCcEEEECCCC-------hhHHHHHHHhcCCCEEEEEee
Confidence             112479999864431       123445589999999988654

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=94.31  E-value=0.24  Score=45.03  Aligned_cols=99  Identities=15%  Similarity=0.132  Sum_probs=64.1

Q ss_pred             hhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC--CCCC-----
Q 019957          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRLP-----  232 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~lp-----  232 (333)
                      .....++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.    |     --.++..+-  .++.     
T Consensus       186 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----G-----a~~vi~~~~~~~~~~~~~~~  256 (374)
T 2jhf_A          186 VAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----G-----ATECVNPQDYKKPIQEVLTE  256 (374)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----T-----CSEEECGGGCSSCHHHHHHH
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----C-----CceEecccccchhHHHHHHH
Confidence            34556788999999876 78888888775233799999999888877652    1     111221110  1110     


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCC-cEEEEEE
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTT  274 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~  274 (333)
                      ..++.+|+|+-.-.     . ...++...+.|+++ |++++..
T Consensus       257 ~~~~g~D~vid~~g-----~-~~~~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          257 MSNGGVDFSFEVIG-----R-LDTMVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             HTTSCBSEEEECSC-----C-HHHHHHHHHHBCTTTCEEEECS
T ss_pred             HhCCCCcEEEECCC-----C-HHHHHHHHHHhhcCCcEEEEec
Confidence            11236899875432     2 34578889999999 9988754

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=94.26  E-value=0.27  Score=44.69  Aligned_cols=100  Identities=17%  Similarity=0.168  Sum_probs=64.6

Q ss_pred             hhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC--CCCC-----
Q 019957          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRLP-----  232 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~lp-----  232 (333)
                      .....++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.    |     --.++...-  .++.     
T Consensus       187 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----G-----a~~vi~~~~~~~~~~~~~~~  257 (374)
T 1cdo_A          187 TAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF----G-----ATDFVNPNDHSEPISQVLSK  257 (374)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----T-----CCEEECGGGCSSCHHHHHHH
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----C-----CceEEeccccchhHHHHHHH
Confidence            34456788999999875 78888888775233799999999888877652    1     111221110  1110     


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCC-cEEEEEEe
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~  275 (333)
                      ...+.+|+|+-.-.     . ...++.+.+.|+++ |++++...
T Consensus       258 ~~~~g~D~vid~~g-----~-~~~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          258 MTNGGVDFSLECVG-----N-VGVMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             HHTSCBSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             HhCCCCCEEEECCC-----C-HHHHHHHHHHhhcCCcEEEEEcC
Confidence            11236899875432     1 34588899999999 99887643

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=94.18  E-value=0.088  Score=46.47  Aligned_cols=92  Identities=17%  Similarity=0.161  Sum_probs=54.5

Q ss_pred             CCeEEEEccCCC-CC-CCCCCcceEEeccccccCC--------------------ChHHHHHHHHHhccCCcEEEEEEec
Q 019957          219 SNLALVRADVCR-LP-FASGFVDAVHAGAALHCWP--------------------SPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       219 ~~i~~~~~d~~~-lp-~~~~~fD~V~~~~vl~h~~--------------------d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      .++.++++|..+ ++ +++++||+|+++--.....                    ....+++++.++|||||.+++....
T Consensus        20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d   99 (297)
T 2zig_A           20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD   99 (297)
T ss_dssp             -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence            457889999866 32 4578999999853332110                    1235678999999999999887643


Q ss_pred             ccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957          277 RYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~  319 (333)
                      ......     .    ...+..+.-..++..+++++||.....
T Consensus       100 ~~~~~~-----~----~g~~~~~~~~~~l~~~~~~~Gf~~~~~  133 (297)
T 2zig_A          100 VAVARR-----R----FGRHLVFPLHADIQVRCRKLGFDNLNP  133 (297)
T ss_dssp             EEEECC-------------EEEECHHHHHHHHHHHTTCEEEEE
T ss_pred             Cccccc-----c----CCcccccccHHHHHHHHHHcCCeeecc
Confidence            210000     0    000000111356778899999976553

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=94.17  E-value=0.17  Score=45.12  Aligned_cols=98  Identities=10%  Similarity=0.062  Sum_probs=63.6

Q ss_pred             hcccCCCeEEEEc-CC-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC------C
Q 019957          162 FKSAQGGLLVDVS-CG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------F  233 (333)
Q Consensus       162 l~~~~~~~vLDiG-cG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~  233 (333)
                      ....++.+||-+| +| .|..+..+++.. +.+|+++|.++..++.+++.        ... ..+..+-.++.      .
T Consensus       136 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~--------Ga~-~~~~~~~~~~~~~~~~~~  205 (325)
T 3jyn_A          136 YQVKPGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKAL--------GAW-ETIDYSHEDVAKRVLELT  205 (325)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH--------TCS-EEEETTTSCHHHHHHHHT
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc--------CCC-EEEeCCCccHHHHHHHHh
Confidence            3456788999999 34 477777777653 34999999999988888753        111 12221111110      1


Q ss_pred             CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ....+|+|+....-       ..+....+.|++||++++....
T Consensus       206 ~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g~~  241 (325)
T 3jyn_A          206 DGKKCPVVYDGVGQ-------DTWLTSLDSVAPRGLVVSFGNA  241 (325)
T ss_dssp             TTCCEEEEEESSCG-------GGHHHHHTTEEEEEEEEECCCT
T ss_pred             CCCCceEEEECCCh-------HHHHHHHHHhcCCCEEEEEecC
Confidence            23479999865432       3477888999999999887543

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=94.17  E-value=0.27  Score=44.67  Aligned_cols=100  Identities=15%  Similarity=0.101  Sum_probs=64.6

Q ss_pred             hhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC--CCCC-----
Q 019957          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRLP-----  232 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~lp-----  232 (333)
                      .....++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.    |     --.++...-  .++.     
T Consensus       190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----G-----a~~vi~~~~~~~~~~~~v~~  260 (376)
T 1e3i_A          190 TAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----G-----ATDCLNPRELDKPVQDVITE  260 (376)
T ss_dssp             TSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----T-----CSEEECGGGCSSCHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----C-----CcEEEccccccchHHHHHHH
Confidence            34456788999999875 78888888875333799999999888877652    1     111221110  1110     


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCC-cEEEEEEe
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~  275 (333)
                      ...+.+|+|+-.-.     . ...++.+.+.|++| |++++...
T Consensus       261 ~~~~g~Dvvid~~G-----~-~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          261 LTAGGVDYSLDCAG-----T-AQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             HHTSCBSEEEESSC-----C-HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             HhCCCccEEEECCC-----C-HHHHHHHHHHhhcCCCEEEEECC
Confidence            11236899875432     2 34588899999999 99987543

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=94.12  E-value=0.22  Score=44.71  Aligned_cols=97  Identities=13%  Similarity=0.179  Sum_probs=65.1

Q ss_pred             cccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----C-CC
Q 019957          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F-AS  235 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~-~~  235 (333)
                      ...++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.    |     --.++..+- +..     . ..
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l----G-----a~~~i~~~~-~~~~~v~~~t~g  237 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV----G-----ADAAVKSGA-GAADAIRELTGG  237 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT----T-----CSEEEECST-THHHHHHHHHGG
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----C-----CCEEEcCCC-cHHHHHHHHhCC
Confidence            456788999999976 88888888763245999999999988888762    1     112222111 110     0 12


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ..+|+|+-.-.     . ...++.+.+.|+++|++++...
T Consensus       238 ~g~d~v~d~~G-----~-~~~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          238 QGATAVFDFVG-----A-QSTIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             GCEEEEEESSC-----C-HHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCeEEEECCC-----C-HHHHHHHHHHHhcCCEEEEECC
Confidence            36898875332     2 3468899999999999988654

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.10  E-value=0.29  Score=45.07  Aligned_cols=100  Identities=12%  Similarity=0.007  Sum_probs=64.1

Q ss_pred             cccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC------CCC
Q 019957          163 KSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FAS  235 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~~  235 (333)
                      ...++.+||=+|+|. |.++..+++.....+|+++|.++..++.+++.    |     --.++..+-.++.      ...
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----G-----a~~vi~~~~~~~~~~i~~~t~g  280 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----G-----ADHVIDPTKENFVEAVLDYTNG  280 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----T-----CSEEECTTTSCHHHHHHHHTTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----C-----CCEEEcCCCCCHHHHHHHHhCC
Confidence            356788999999876 78888888875334899999999988888763    1     1112211111110      112


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhc----cCCcEEEEEEec
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRIL----RSGGVFVGTTFL  276 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~L----kpgG~l~i~~~~  276 (333)
                      ..+|+|+-.     +..+...+..+.+.|    ++||++++....
T Consensus       281 ~g~D~vid~-----~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~  320 (404)
T 3ip1_A          281 LGAKLFLEA-----TGVPQLVWPQIEEVIWRARGINATVAIVARA  320 (404)
T ss_dssp             CCCSEEEEC-----SSCHHHHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred             CCCCEEEEC-----CCCcHHHHHHHHHHHHhccCCCcEEEEeCCC
Confidence            369998743     334444556666666    999999886543

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.04  E-value=0.18  Score=45.36  Aligned_cols=96  Identities=8%  Similarity=0.117  Sum_probs=62.7

Q ss_pred             cccCCCeEEEEcCCc-CHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc----cC-CCCCCCC
Q 019957          163 KSAQGGLLVDVSCGS-GLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA----DV-CRLPFAS  235 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~-G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~----d~-~~lp~~~  235 (333)
                      .. ++.+||-+|+|. |.++..+++.. ++.+|+++|.++..++.+++.    |    .. .++..    +. ..+. ..
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l----G----a~-~vi~~~~~~~~~~~~~-~g  236 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL----G----AD-YVSEMKDAESLINKLT-DG  236 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH----T----CS-EEECHHHHHHHHHHHH-TT
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh----C----CC-EEeccccchHHHHHhh-cC
Confidence            45 788999999975 77777777653 234899999999988888763    1    11 12211    11 1111 12


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ..+|+|+-.-.     . ...++.+.+.|+++|++++...
T Consensus       237 ~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          237 LGASIAIDLVG-----T-EETTYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             CCEEEEEESSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCccEEEECCC-----C-hHHHHHHHHHhhcCCEEEEeCC
Confidence            36999986432     1 3358889999999999887643

>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=93.99  E-value=0.023  Score=35.77  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=24.1

Q ss_pred             ccccCeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957           55 ELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        55 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      .++...--||.||+.+.....         .+.+.|..||..+.
T Consensus        14 kv~~~~k~CP~CG~~~fm~~~---------~~R~~C~kCG~t~~   48 (50)
T 3j20_Y           14 KVIRKNKFCPRCGPGVFMADH---------GDRWACGKCGYTEW   48 (50)
T ss_dssp             CEECSSEECSSSCSSCEEEEC---------SSEEECSSSCCEEE
T ss_pred             EEEEecccCCCCCCceEEecC---------CCeEECCCCCCEEE
Confidence            455556679999986533321         15899999998764

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=93.87  E-value=0.21  Score=45.38  Aligned_cols=99  Identities=16%  Similarity=0.179  Sum_probs=64.1

Q ss_pred             hhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC--CCC-----C
Q 019957          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRL-----P  232 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~l-----p  232 (333)
                      .....++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.    |    -. .++...-  .++     .
T Consensus       185 ~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----G----a~-~vi~~~~~~~~~~~~v~~  255 (373)
T 2fzw_A          185 TAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----G----AT-ECINPQDFSKPIQEVLIE  255 (373)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----T----CS-EEECGGGCSSCHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C----Cc-eEeccccccccHHHHHHH
Confidence            34556788999999876 77777777764233799999999888887753    1    11 1221110  111     0


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCC-cEEEEEE
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTT  274 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~  274 (333)
                      ...+.+|+|+-...     . ...++.+.+.|+++ |++++..
T Consensus       256 ~~~~g~D~vid~~g-----~-~~~~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          256 MTDGGVDYSFECIG-----N-VKVMRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             HTTSCBSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECS
T ss_pred             HhCCCCCEEEECCC-----c-HHHHHHHHHhhccCCcEEEEEe
Confidence            11236899875432     1 34588899999999 9998764

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=93.77  E-value=0.29  Score=43.99  Aligned_cols=98  Identities=12%  Similarity=0.016  Sum_probs=63.3

Q ss_pred             hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC------CC
Q 019957          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FA  234 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~  234 (333)
                      ... ++.+||-+|+|. |..+..+++.....+|+++|.++..++.+++.    |    . -.++..+-.++.      ..
T Consensus       164 ~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----G----a-~~~~~~~~~~~~~~v~~~~~  233 (348)
T 2d8a_A          164 GPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----G----A-DYVINPFEEDVVKEVMDITD  233 (348)
T ss_dssp             SCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----T----C-SEEECTTTSCHHHHHHHHTT
T ss_pred             cCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----C----C-CEEECCCCcCHHHHHHHHcC
Confidence            345 788999999975 77777777765223899999999888877653    1    1 112211111110      01


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ...+|+|+....     . ...++.+.+.|+++|+++....
T Consensus       234 g~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          234 GNGVDVFLEFSG-----A-PKALEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             TSCEEEEEECSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEcc
Confidence            236999886432     1 3457888999999999887654

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=93.71  E-value=0.13  Score=45.31  Aligned_cols=71  Identities=14%  Similarity=0.027  Sum_probs=54.1

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC----CCCcce
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA----SGFVDA  240 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~----~~~fD~  240 (333)
                      ...++||+-||.|.+...+...|.... +.++|+++.+.+..+.+        .+...++.+|+.++...    .+.+|+
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N--------~~~~~~~~~DI~~i~~~~i~~~~~~Dl   86 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVR--------HQGKIMYVGDVRSVTQKHIQEWGPFDL   86 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHH--------TTTCEEEECCGGGCCHHHHHHTCCCSE
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHh--------CCCCceeCCChHHccHHHhcccCCcCE
Confidence            356899999999999999999875433 69999999988776665        33456788999876421    136999


Q ss_pred             EEec
Q 019957          241 VHAG  244 (333)
Q Consensus       241 V~~~  244 (333)
                      ++..
T Consensus        87 l~gg   90 (295)
T 2qrv_A           87 VIGG   90 (295)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9974

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=93.62  E-value=0.34  Score=43.68  Aligned_cols=94  Identities=12%  Similarity=0.080  Sum_probs=61.4

Q ss_pred             hcccCCCeEEEEcC--CcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-------
Q 019957          162 FKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------  232 (333)
Q Consensus       162 l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------  232 (333)
                      ....++.+||-.|+  |.|..+..+++.. +.+|+++|.+++.++.+++.    |    .. ..+  |..+..       
T Consensus       166 ~~~~~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~----g----a~-~~~--d~~~~~~~~~~~~  233 (351)
T 1yb5_A          166 ACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQN----G----AH-EVF--NHREVNYIDKIKK  233 (351)
T ss_dssp             SCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T----CS-EEE--ETTSTTHHHHHHH
T ss_pred             hCCCCcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHHc----C----CC-EEE--eCCCchHHHHHHH
Confidence            34567889999997  3477766666653 34899999999887766542    1    11 122  222211       


Q ss_pred             -CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                       .....+|+|+....       ...+....+.|+++|++++..
T Consensus       234 ~~~~~~~D~vi~~~G-------~~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          234 YVGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             HHCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEECC
T ss_pred             HcCCCCcEEEEECCC-------hHHHHHHHHhccCCCEEEEEe
Confidence             11236999986543       235778889999999998765

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=93.61  E-value=0.4  Score=43.38  Aligned_cols=99  Identities=14%  Similarity=0.108  Sum_probs=64.3

Q ss_pred             HhhcccCCCeEEEEc-C-CcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----
Q 019957          160 EYFKSAQGGLLVDVS-C-GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----  232 (333)
Q Consensus       160 ~~l~~~~~~~vLDiG-c-G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----  232 (333)
                      +.....++.+||-+| + |.|..+..+++.. +.+|+++|.+++.++.+++.    |    .. .++..+-.++.     
T Consensus       157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~----G----a~-~~~~~~~~~~~~~~~~  226 (362)
T 2c0c_A          157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSL----G----CD-RPINYKTEPVGTVLKQ  226 (362)
T ss_dssp             HHTCCCTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T----CS-EEEETTTSCHHHHHHH
T ss_pred             HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHc----C----Cc-EEEecCChhHHHHHHH
Confidence            334556788999999 3 4588887777764 34899999998888777652    1    11 12221111110     


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ...+.+|+|+-...     .  ..++.+.+.|+++|++++...
T Consensus       227 ~~~~g~D~vid~~g-----~--~~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          227 EYPEGVDVVYESVG-----G--AMFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             HCTTCEEEEEECSC-----T--HHHHHHHHHEEEEEEEEECCC
T ss_pred             hcCCCCCEEEECCC-----H--HHHHHHHHHHhcCCEEEEEeC
Confidence            11246899886543     1  468889999999999887654

>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A

Probab=93.57  E-value=0.051  Score=35.36  Aligned_cols=30  Identities=17%  Similarity=0.362  Sum_probs=21.2

Q ss_pred             CeecccCCCc-cccccCCCCccccccccCceeeCCCCccc
Q 019957           59 DLFSCPICYE-PLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        59 ~~l~CP~C~~-~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      ..+.||.|++ .+....         ..+.+.|..||.++
T Consensus        10 ~~~~Cp~C~~~~lv~D~---------~~ge~vC~~CGlVl   40 (58)
T 1dl6_A           10 PRVTCPNHPDAILVEDY---------RAGDMICPECGLVV   40 (58)
T ss_dssp             SCCSBTTBSSSCCEECS---------SSCCEECTTTCCEE
T ss_pred             ccccCcCCCCCceeEeC---------CCCeEEeCCCCCEE
Confidence            3457999998 443322         23689999999876

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=93.50  E-value=0.29  Score=43.84  Aligned_cols=97  Identities=10%  Similarity=0.008  Sum_probs=63.2

Q ss_pred             hhcccCCCeEEEEcC--CcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC---CC---
Q 019957          161 YFKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR---LP---  232 (333)
Q Consensus       161 ~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~---lp---  232 (333)
                      .....++.+||-+|+  |.|..+..+++.. +.+|+++|.++..++.+++.+   |    .. ..+  |..+   +.   
T Consensus       150 ~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~~---g----~~-~~~--d~~~~~~~~~~~  218 (345)
T 2j3h_A          150 VCSPKEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKTKF---G----FD-DAF--NYKEESDLTAAL  218 (345)
T ss_dssp             TSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTS---C----CS-EEE--ETTSCSCSHHHH
T ss_pred             HhCCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHc---C----Cc-eEE--ecCCHHHHHHHH
Confidence            345567889999997  4577777777653 348999999998877776321   1    11 122  3221   10   


Q ss_pred             --CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          233 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                        ...+.+|+|+....       ...+....+.|++||++++...
T Consensus       219 ~~~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~G~  256 (345)
T 2j3h_A          219 KRCFPNGIDIYFENVG-------GKMLDAVLVNMNMHGRIAVCGM  256 (345)
T ss_dssp             HHHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECCC
T ss_pred             HHHhCCCCcEEEECCC-------HHHHHHHHHHHhcCCEEEEEcc
Confidence              01246899886543       2368889999999999987643

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=93.32  E-value=0.21  Score=45.66  Aligned_cols=99  Identities=22%  Similarity=0.223  Sum_probs=64.2

Q ss_pred             hc-ccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc------CC-CCC
Q 019957          162 FK-SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD------VC-RLP  232 (333)
Q Consensus       162 l~-~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d------~~-~lp  232 (333)
                      .. ..++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.    |     --.++..+      +. .+.
T Consensus       190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----G-----a~~vi~~~~~~~~~~~~~v~  260 (380)
T 1vj0_A          190 YPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----G-----ADLTLNRRETSVEERRKAIM  260 (380)
T ss_dssp             CSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----T-----CSEEEETTTSCHHHHHHHHH
T ss_pred             cCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc----C-----CcEEEeccccCcchHHHHHH
Confidence            44 56788999999775 78888888775224999999999888887752    1     11222221      10 010


Q ss_pred             --CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          233 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                        .....+|+|+-...     . ...++.+.+.|+++|++++...
T Consensus       261 ~~~~g~g~Dvvid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          261 DITHGRGADFILEATG-----D-SRALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             HHTTTSCEEEEEECSS-----C-TTHHHHHHHHEEEEEEEEECCC
T ss_pred             HHhCCCCCcEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEec
Confidence              11236999985432     1 1347888999999999887643

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=93.31  E-value=0.12  Score=46.43  Aligned_cols=127  Identities=13%  Similarity=0.082  Sum_probs=80.3

Q ss_pred             CeEEEEcCCcCHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC---CCCCcceEEe
Q 019957          168 GLLVDVSCGSGLFSRKFAKSGTY-SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFVDAVHA  243 (333)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---~~~~fD~V~~  243 (333)
                      -+++|+-||.|.+...+...|.. ..+.++|+++.+.+.-+.+.        +...++.+|+.++..   +...+|+++.
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~--------~~~~~~~~DI~~~~~~~~~~~~~D~l~g   75 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNF--------PETNLLNRNIQQLTPQVIKKWNVDTILM   75 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC--------TTSCEECCCGGGCCHHHHHHTTCCEEEE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhC--------CCCceeccccccCCHHHhccCCCCEEEe
Confidence            37999999999999999988742 35889999999888877763        344567788877642   2336899986


Q ss_pred             cccccc---------CCChH-HHHHHHHHhccCC--cEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHh
Q 019957          244 GAALHC---------WPSPS-NAVAEISRILRSG--GVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTS  311 (333)
Q Consensus       244 ~~vl~h---------~~d~~-~~l~~~~r~Lkpg--G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~  311 (333)
                      ..--..         ..|+. .++.++.++++.-  =.+++.+....     + ..           .-+.+.+.+.|++
T Consensus        76 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P~~~vlENV~g-----l-~~-----------~~~~~~i~~~l~~  138 (333)
T 4h0n_A           76 SPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNVDYILMENVKG-----F-EN-----------STVRNLFIDKLKE  138 (333)
T ss_dssp             CCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTCCEEEEEECTT-----G-GG-----------SHHHHHHHHHHHH
T ss_pred             cCCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCCCEEEEecchh-----h-hh-----------hhHHHHHHHHHHh
Confidence            433222         23443 2344444444321  24455554332     1 00           0023678889999


Q ss_pred             CCCcEEEE
Q 019957          312 CGLTNYTS  319 (333)
Q Consensus       312 aGf~~v~~  319 (333)
                      .|+.+...
T Consensus       139 ~GY~v~~~  146 (333)
T 4h0n_A          139 CNFIYQEF  146 (333)
T ss_dssp             TTEEEEEE
T ss_pred             CCCeEEEE
Confidence            99987554

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=93.28  E-value=0.17  Score=45.50  Aligned_cols=97  Identities=15%  Similarity=0.070  Sum_probs=63.4

Q ss_pred             HhhcccCCCeEEEEcC-C-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----
Q 019957          160 EYFKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----  232 (333)
Q Consensus       160 ~~l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----  232 (333)
                      +.....++.+||-+|+ | .|..+..+++.. +.+|++++.++..++.+++.    |    .. .++..+ .++.     
T Consensus       153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~----g----a~-~v~~~~-~~~~~~v~~  221 (342)
T 4eye_A          153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKSV----G----AD-IVLPLE-EGWAKAVRE  221 (342)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH----T----CS-EEEESS-TTHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc----C----Cc-EEecCc-hhHHHHHHH
Confidence            3344567889999997 3 478887777764 34999999998888777763    1    11 222222 2211     


Q ss_pred             -CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                       .....+|+|+-...-       ..+..+.+.|++||++++..
T Consensus       222 ~~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          222 ATGGAGVDMVVDPIGG-------PAFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             HTTTSCEEEEEESCC---------CHHHHHHTEEEEEEEEEC-
T ss_pred             HhCCCCceEEEECCch-------hHHHHHHHhhcCCCEEEEEE
Confidence             112369999865432       24778889999999998864

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=93.19  E-value=0.014  Score=39.99  Aligned_cols=39  Identities=26%  Similarity=0.541  Sum_probs=22.1

Q ss_pred             CeecccCCCccccccC-----CCCccccc-----------cccCceeeCCCCccc
Q 019957           59 DLFSCPICYEPLIRKG-----PTGLTLGA-----------IYRSGFKCRKCDKTY   97 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~-----~~~~~~~~-----------~~~~~~~C~~C~~~~   97 (333)
                      ++-.||+||++|-...     ..-.+..+           +.+=.+.|+.||..|
T Consensus         7 ~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEF   61 (95)
T 2k5c_A            7 HMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEF   61 (95)
T ss_dssp             -CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEE
T ss_pred             ccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHH
Confidence            4668999999753211     11111112           222367899999876

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=93.10  E-value=0.55  Score=42.95  Aligned_cols=45  Identities=9%  Similarity=0.109  Sum_probs=33.5

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhC-------CCCeEEEEeCCHHHHHHHHHHHH
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSG-------TYSGVVALDFSENMLRQCYDFIK  211 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~-------~~~~v~g~D~s~~~~~~a~~~~~  211 (333)
                      +-.|+|+|.|.|.++..+.+..       ...+++.+|+|+...+.-++++.
T Consensus        81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  132 (387)
T 1zkd_A           81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  132 (387)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc
Confidence            3479999999999988776531       23489999999987765555543

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=92.99  E-value=0.49  Score=42.42  Aligned_cols=91  Identities=13%  Similarity=0.177  Sum_probs=59.9

Q ss_pred             CCCeEEEE-cCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-----CCCCCCc
Q 019957          166 QGGLLVDV-SCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----PFASGFV  238 (333)
Q Consensus       166 ~~~~vLDi-GcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~~f  238 (333)
                      ++.+||-+ |+|. |.++..+++.. +.+|+++|.++..++.+++.    |   . . .++..+ .++     ....+.+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l----G---a-~-~vi~~~-~~~~~~~~~~~~~g~  218 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKKM----G---A-D-IVLNHK-ESLLNQFKTQGIELV  218 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHHH----T---C-S-EEECTT-SCHHHHHHHHTCCCE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc----C---C-c-EEEECC-ccHHHHHHHhCCCCc
Confidence            68899999 4554 77877777764 34999999999888888763    1   1 1 111111 111     0123469


Q ss_pred             ceEEeccccccCCChHHHHHHHHHhccCCcEEEEE
Q 019957          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT  273 (333)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~  273 (333)
                      |+|+-...      ....+..+.+.|+++|+++..
T Consensus       219 Dvv~d~~g------~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          219 DYVFCTFN------TDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             EEEEESSC------HHHHHHHHHHHEEEEEEEEES
T ss_pred             cEEEECCC------chHHHHHHHHHhccCCEEEEE
Confidence            98886432      245578889999999999764

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=92.93  E-value=0.46  Score=42.11  Aligned_cols=90  Identities=12%  Similarity=0.123  Sum_probs=59.9

Q ss_pred             eEEEEcC-C-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE-ccCCCC-CCCCCCcceEEec
Q 019957          169 LLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRL-PFASGFVDAVHAG  244 (333)
Q Consensus       169 ~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~~l-p~~~~~fD~V~~~  244 (333)
                      +||=+|+ | .|.++..+++.. +.+|++++.++..++.+++.    |    .. .++. .+.... ....+.+|+|+-.
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~l----G----a~-~vi~~~~~~~~~~~~~~~~d~v~d~  218 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKSL----G----AN-RILSRDEFAESRPLEKQLWAGAIDT  218 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHH----T----CS-EEEEGGGSSCCCSSCCCCEEEEEES
T ss_pred             eEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc----C----CC-EEEecCCHHHHHhhcCCCccEEEEC
Confidence            4999997 4 488888888875 44999999999888888763    1    11 1121 111111 1224578987753


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      -     ..  ..+..+.+.|+++|+++....
T Consensus       219 ~-----g~--~~~~~~~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          219 V-----GD--KVLAKVLAQMNYGGCVAACGL  242 (324)
T ss_dssp             S-----CH--HHHHHHHHTEEEEEEEEECCC
T ss_pred             C-----Cc--HHHHHHHHHHhcCCEEEEEec
Confidence            2     22  378999999999999988643

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=92.88  E-value=0.5  Score=42.33  Aligned_cols=94  Identities=16%  Similarity=0.092  Sum_probs=62.6

Q ss_pred             cccCCCeEEEEcC--CcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--------
Q 019957          163 KSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------  232 (333)
Q Consensus       163 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------  232 (333)
                      ...++.+||-+|+  |.|..+..+++.. +.+|+++|.++..++.+++.    |   . . .++  |..+..        
T Consensus       163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~----g---a-~-~~~--d~~~~~~~~~~~~~  230 (343)
T 2eih_A          163 GVRPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKAL----G---A-D-ETV--NYTHPDWPKEVRRL  230 (343)
T ss_dssp             CCCTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH----T---C-S-EEE--ETTSTTHHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc----C---C-C-EEE--cCCcccHHHHHHHH
Confidence            4456889999998  4577777777664 34999999999888877652    1   1 1 122  322211        


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      .....+|+|+.... .      ..++.+.+.|+++|++++...
T Consensus       231 ~~~~~~d~vi~~~g-~------~~~~~~~~~l~~~G~~v~~g~  266 (343)
T 2eih_A          231 TGGKGADKVVDHTG-A------LYFEGVIKATANGGRIAIAGA  266 (343)
T ss_dssp             TTTTCEEEEEESSC-S------SSHHHHHHHEEEEEEEEESSC
T ss_pred             hCCCCceEEEECCC-H------HHHHHHHHhhccCCEEEEEec
Confidence            11247999986554 2      237788899999999887643

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=92.84  E-value=0.28  Score=44.07  Aligned_cols=95  Identities=17%  Similarity=0.183  Sum_probs=61.6

Q ss_pred             cccCCCeEEEEcC--CcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CC-------
Q 019957          163 KSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP-------  232 (333)
Q Consensus       163 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp-------  232 (333)
                      ...++.+||-+|+  |.|..+..+++.. +.+|+++|.++..++.+++.    |    .. ..+  |..+ ..       
T Consensus       166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~~----g----~~-~~~--d~~~~~~~~~~~~~  233 (347)
T 2hcy_A          166 NLMAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRSI----G----GE-VFI--DFTKEKDIVGAVLK  233 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHHT----T----CC-EEE--ETTTCSCHHHHHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHHc----C----Cc-eEE--ecCccHhHHHHHHH
Confidence            4567889999998  3577776666653 34999999988777766541    1    11 122  3321 11       


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ...+.+|+|+....      ....++.+.+.|+++|++++...
T Consensus       234 ~~~~~~D~vi~~~g------~~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          234 ATDGGAHGVINVSV------SEAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             HHTSCEEEEEECSS------CHHHHHHHTTSEEEEEEEEECCC
T ss_pred             HhCCCCCEEEECCC------cHHHHHHHHHHHhcCCEEEEEeC
Confidence            01126898886543      13468889999999999887653

>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1

Probab=92.72  E-value=0.048  Score=35.31  Aligned_cols=41  Identities=22%  Similarity=0.322  Sum_probs=22.4

Q ss_pred             CeecccCCCccccc-cCCCCccccccccCceeeCCCCccccC
Q 019957           59 DLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (333)
Q Consensus        59 ~~l~CP~C~~~l~~-~~~~~~~~~~~~~~~~~C~~C~~~~~~   99 (333)
                      ....||.|++.-.. .........+-..-.+.|.+||+.+..
T Consensus        14 ~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~   55 (57)
T 1qyp_A           14 TKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS   55 (57)
T ss_dssp             EECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred             eEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence            36789999984211 000000111222346899999998743

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=92.58  E-value=0.74  Score=43.46  Aligned_cols=73  Identities=16%  Similarity=0.201  Sum_probs=51.2

Q ss_pred             HHHHHHHHhhccc------CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc
Q 019957          153 EEFKMAQEYFKSA------QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA  226 (333)
Q Consensus       153 ~~~~~~~~~l~~~------~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~  226 (333)
                      .+...+..+++..      ..-+++|+-||.|.+..-+...|. ..+.++|+++.+.+.-+.+...     .+...++.+
T Consensus        68 ~~~~~l~~~~~~~p~~~~~~~~~viDLFaG~GGlslG~~~aG~-~~v~avE~d~~A~~ty~~N~~~-----~p~~~~~~~  141 (482)
T 3me5_A           68 KEFAHLQTLLPKPPEHHPHYAFRFIDLFAGIGGIRRGFESIGG-QCVFTSEWNKHAVRTYKANHYC-----DPATHHFNE  141 (482)
T ss_dssp             HHHHHHHTTSCCCCTTTTCCSEEEEEESCTTSHHHHHHHTTTE-EEEEEECCCHHHHHHHHHHSCC-----CTTTCEEES
T ss_pred             HHHHHHHhhCCCCCccCCCccceEEEecCCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHhccc-----CCCcceecc
Confidence            3445555555432      235799999999999999998874 3589999999888777765421     234556778


Q ss_pred             cCCCC
Q 019957          227 DVCRL  231 (333)
Q Consensus       227 d~~~l  231 (333)
                      |+.++
T Consensus       142 DI~~i  146 (482)
T 3me5_A          142 DIRDI  146 (482)
T ss_dssp             CTHHH
T ss_pred             chhhh
Confidence            87654

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=92.53  E-value=0.25  Score=44.07  Aligned_cols=88  Identities=14%  Similarity=0.068  Sum_probs=53.8

Q ss_pred             CCeEEEEccCCC-CC-CCCCCcceEEeccccccC--------------CChHHHHHHHHHhccCCcEEEEEEecccCCCc
Q 019957          219 SNLALVRADVCR-LP-FASGFVDAVHAGAALHCW--------------PSPSNAVAEISRILRSGGVFVGTTFLRYTSST  282 (333)
Q Consensus       219 ~~i~~~~~d~~~-lp-~~~~~fD~V~~~~vl~h~--------------~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~  282 (333)
                      ....++++|..+ +. +++++||+|++.--....              ......++++.++|||||.+++..........
T Consensus        13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~   92 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGV   92 (323)
T ss_dssp             SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTE
T ss_pred             CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCC
Confidence            457788888754 33 457899999985332111              12457789999999999999997643210000


Q ss_pred             chhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEE
Q 019957          283 SLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT  318 (333)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~  318 (333)
                      +.            ...+....+.++++..||....
T Consensus        93 ~~------------~~~~~~~~i~~~~~~~Gf~~~~  116 (323)
T 1boo_A           93 PA------------RSIYNFRVLIRMIDEVGFFLAE  116 (323)
T ss_dssp             EE------------ECCHHHHHHHHHHHTTCCEEEE
T ss_pred             cc------------cccchHHHHHHHHHhCCCEEEE
Confidence            00            0011223455678899997654

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=92.51  E-value=0.21  Score=45.14  Aligned_cols=98  Identities=15%  Similarity=0.111  Sum_probs=59.3

Q ss_pred             ccc-CCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc-CCCCCCCCCCcc
Q 019957          163 KSA-QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-VCRLPFASGFVD  239 (333)
Q Consensus       163 ~~~-~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d-~~~lp~~~~~fD  239 (333)
                      ... ++.+||-+|+|. |.++..+++.. +.+|+++|.+++.++.+++.+   |   ..  .++..+ ...+.-..+.+|
T Consensus       176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~~l---G---a~--~vi~~~~~~~~~~~~~g~D  246 (357)
T 2cf5_A          176 GLKQPGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSNKKREEALQDL---G---AD--DYVIGSDQAKMSELADSLD  246 (357)
T ss_dssp             STTSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHHTTS---C---CS--CEEETTCHHHHHHSTTTEE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHc---C---Cc--eeeccccHHHHHHhcCCCC
Confidence            445 788999999875 77777777663 348999999987776665321   1   11  112111 000100123689


Q ss_pred             eEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      +|+-.-.-.      ..++...+.|++||+++....
T Consensus       247 ~vid~~g~~------~~~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          247 YVIDTVPVH------HALEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             EEEECCCSC------CCSHHHHTTEEEEEEEEECSC
T ss_pred             EEEECCCCh------HHHHHHHHHhccCCEEEEeCC
Confidence            988543211      125667789999999987643

>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}

Probab=92.42  E-value=0.034  Score=43.04  Aligned_cols=27  Identities=30%  Similarity=0.571  Sum_probs=24.3

Q ss_pred             cccCceeeCCCCccccCcCCceeeecc
Q 019957           83 IYRSGFKCRKCDKTYSSKDNYLDLTVI  109 (333)
Q Consensus        83 ~~~~~~~C~~C~~~~~~~~g~~~~~~~  109 (333)
                      +..|.+.|+.||+.|++++|+++++..
T Consensus       105 v~eg~L~C~~cg~~YPI~dGIP~mL~~  131 (141)
T 2j6a_A          105 IAEGEMKCRNCGHIYYIKNGIPNLLLP  131 (141)
T ss_dssp             EEEEEEECTTTCCEEEEETTEESSCCC
T ss_pred             ccCCEEECCCCCCcccccCCccCcCCc
Confidence            456789999999999999999999875

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=92.33  E-value=0.25  Score=44.81  Aligned_cols=98  Identities=17%  Similarity=0.146  Sum_probs=59.5

Q ss_pred             ccc-CCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc-CCCCCCCCCCcc
Q 019957          163 KSA-QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-VCRLPFASGFVD  239 (333)
Q Consensus       163 ~~~-~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d-~~~lp~~~~~fD  239 (333)
                      ... ++.+||-+|+|. |.++..+++.. +.+|+++|.++..++.+++.+   |     .-.++... ...+.-..+.+|
T Consensus       183 ~~~~~g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~l---G-----a~~v~~~~~~~~~~~~~~~~D  253 (366)
T 1yqd_A          183 GLDEPGKHIGIVGLGGLGHVAVKFAKAF-GSKVTVISTSPSKKEEALKNF---G-----ADSFLVSRDQEQMQAAAGTLD  253 (366)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHHTS---C-----CSEEEETTCHHHHHHTTTCEE
T ss_pred             CcCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhc---C-----CceEEeccCHHHHHHhhCCCC
Confidence            444 788999999875 77777777764 348999999988776665322   1     11122111 000100013699


Q ss_pred             eEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      +|+.......      .++...+.|+++|+++....
T Consensus       254 ~vid~~g~~~------~~~~~~~~l~~~G~iv~~g~  283 (366)
T 1yqd_A          254 GIIDTVSAVH------PLLPLFGLLKSHGKLILVGA  283 (366)
T ss_dssp             EEEECCSSCC------CSHHHHHHEEEEEEEEECCC
T ss_pred             EEEECCCcHH------HHHHHHHHHhcCCEEEEEcc
Confidence            9886433211      24567788999999887643

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=92.26  E-value=0.72  Score=41.69  Aligned_cols=88  Identities=13%  Similarity=0.042  Sum_probs=57.7

Q ss_pred             CCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCH---HHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC------CC
Q 019957          167 GGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSE---NMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA------SG  236 (333)
Q Consensus       167 ~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~---~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~------~~  236 (333)
                      +.+||-+|+|. |..+..+++.. +.+|+++|.++   +.++.+++.          +.+.+  | .+ .+.      .+
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~~~----------ga~~v--~-~~-~~~~~~~~~~~  245 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTY-GLEVWMANRREPTEVEQTVIEET----------KTNYY--N-SS-NGYDKLKDSVG  245 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHH-TCEEEEEESSCCCHHHHHHHHHH----------TCEEE--E-CT-TCSHHHHHHHC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCccchHHHHHHHHh----------CCcee--c-hH-HHHHHHHHhCC
Confidence            88999999854 66666666553 23999999987   777766642          12333  3 22 211      14


Q ss_pred             CcceEEeccccccCCChHHHH-HHHHHhccCCcEEEEEEe
Q 019957          237 FVDAVHAGAALHCWPSPSNAV-AEISRILRSGGVFVGTTF  275 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l-~~~~r~LkpgG~l~i~~~  275 (333)
                      .+|+|+.....     + ..+ +.+.+.|+++|.+++...
T Consensus       246 ~~d~vid~~g~-----~-~~~~~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          246 KFDVIIDATGA-----D-VNILGNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             CEEEEEECCCC-----C-THHHHHHGGGEEEEEEEEECSC
T ss_pred             CCCEEEECCCC-----h-HHHHHHHHHHHhcCCEEEEEec
Confidence            68998865432     1 235 888999999999887643

>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=92.23  E-value=0.08  Score=35.79  Aligned_cols=31  Identities=23%  Similarity=0.682  Sum_probs=22.8

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      ....||.|+..-.....         .|+++|..|+..+.
T Consensus        25 ~ky~C~fCgk~~vkR~a---------~GIW~C~~C~~~~A   55 (72)
T 3jyw_9           25 ARYDCSFCGKKTVKRGA---------AGIWTCSCCKKTVA   55 (72)
T ss_dssp             SCBCCSSCCSSCBSBCS---------SSCBCCSSSCCCCC
T ss_pred             cCccCCCCCCceeEecC---------CCeEECCCCCCEEe
Confidence            45689999986543322         37999999998774

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=92.19  E-value=0.68  Score=40.98  Aligned_cols=97  Identities=18%  Similarity=0.129  Sum_probs=59.8

Q ss_pred             HhhcccCCCeEEEEc-CCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CCCCCC
Q 019957          160 EYFKSAQGGLLVDVS-CGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LPFASG  236 (333)
Q Consensus       160 ~~l~~~~~~~vLDiG-cG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~  236 (333)
                      +.....++.+||=+| +|. |.++..+++.. +.++++++ ++..++.+++.    |   . . .++..+-.+ +.-.-.
T Consensus       146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~-~~~~~~~~~~l----G---a-~-~~i~~~~~~~~~~~~~  214 (321)
T 3tqh_A          146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQK-GTTVITTA-SKRNHAFLKAL----G---A-E-QCINYHEEDFLLAIST  214 (321)
T ss_dssp             HHTTCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEE-CHHHHHHHHHH----T---C-S-EEEETTTSCHHHHCCS
T ss_pred             HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEe-ccchHHHHHHc----C---C-C-EEEeCCCcchhhhhcc
Confidence            445567788999997 554 88888888775 44899998 55546666542    2   1 1 122211111 111114


Q ss_pred             CcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      .+|+|+-.-.       ...+....+.|+++|+++...
T Consensus       215 g~D~v~d~~g-------~~~~~~~~~~l~~~G~iv~~g  245 (321)
T 3tqh_A          215 PVDAVIDLVG-------GDVGIQSIDCLKETGCIVSVP  245 (321)
T ss_dssp             CEEEEEESSC-------HHHHHHHGGGEEEEEEEEECC
T ss_pred             CCCEEEECCC-------cHHHHHHHHhccCCCEEEEeC
Confidence            6898875432       223478899999999998753

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=92.18  E-value=0.37  Score=43.45  Aligned_cols=97  Identities=12%  Similarity=0.011  Sum_probs=62.6

Q ss_pred             hcccCCCeEEEEc-CC-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CC
Q 019957          162 FKSAQGGLLVDVS-CG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA  234 (333)
Q Consensus       162 l~~~~~~~vLDiG-cG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~  234 (333)
                      ....++.+||-+| +| .|..+..+++.. +.+|+++|.++..++.+++.    |    .. ..+..+-.++.     ..
T Consensus       163 ~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~l----G----a~-~~~~~~~~~~~~~~~~~~  232 (353)
T 4dup_A          163 AGLTEGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACERL----G----AK-RGINYRSEDFAAVIKAET  232 (353)
T ss_dssp             TCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH----T----CS-EEEETTTSCHHHHHHHHH
T ss_pred             cCCCCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc----C----CC-EEEeCCchHHHHHHHHHh
Confidence            4456788999995 33 477777777764 34899999999988887763    1    11 12221111110     01


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      .+.+|+|+....-       ..+....+.|+++|.+++...
T Consensus       233 ~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          233 GQGVDIILDMIGA-------AYFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             SSCEEEEEESCCG-------GGHHHHHHTEEEEEEEEECCC
T ss_pred             CCCceEEEECCCH-------HHHHHHHHHhccCCEEEEEEe
Confidence            3469999865432       247788899999999887653

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=92.14  E-value=0.17  Score=45.83  Aligned_cols=98  Identities=11%  Similarity=0.098  Sum_probs=61.6

Q ss_pred             hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC-CC--CCCCCC
Q 019957          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-RL--PFASGF  237 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~-~l--p~~~~~  237 (333)
                      ....++.+||-+|+|. |.++..+++.. +.+|+++|.++..++.+++.    |    .. .++...-. ++  ... +.
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~l----G----a~-~v~~~~~~~~~~~~~~-~~  243 (360)
T 1piw_A          175 NGCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKM----G----AD-HYIATLEEGDWGEKYF-DT  243 (360)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH----T----CS-EEEEGGGTSCHHHHSC-SC
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHc----C----CC-EEEcCcCchHHHHHhh-cC
Confidence            4556788999999865 77777777753 33899999998888877762    1    11 12222111 11  011 47


Q ss_pred             cceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      +|+|+-...-.    ....++.+.+.|++||+++...
T Consensus       244 ~D~vid~~g~~----~~~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          244 FDLIVVCASSL----TDIDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             EEEEEECCSCS----TTCCTTTGGGGEEEEEEEEECC
T ss_pred             CCEEEECCCCC----cHHHHHHHHHHhcCCCEEEEec
Confidence            99998644320    0122566778999999988754

>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5

Probab=92.04  E-value=0.085  Score=39.68  Aligned_cols=30  Identities=23%  Similarity=0.575  Sum_probs=24.4

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      .+-.||.|++...-...          ..+.|+.|++.+.
T Consensus        26 ~lP~CP~C~seytYeDg----------~l~vCPeC~hEW~   55 (138)
T 2akl_A           26 TLPPCPQCNSEYTYEDG----------ALLVCPECAHEWS   55 (138)
T ss_dssp             CSCCCTTTCCCCCEECS----------SSEEETTTTEEEC
T ss_pred             cCCCCCCCCCcceEecC----------CeEECCccccccC
Confidence            46789999998866554          4899999999984

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=92.01  E-value=1.4  Score=39.11  Aligned_cols=125  Identities=13%  Similarity=0.148  Sum_probs=78.7

Q ss_pred             eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC-CCCcceEEecccc
Q 019957          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGAAL  247 (333)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~vl  247 (333)
                      +|||+=||.|.+..-+.+.|. .-+.++|+++.+.+.-+.+.         .-.++.+|+.++... -..+|+++...--
T Consensus         2 kvidLFsG~GG~~~G~~~aG~-~~v~a~e~d~~a~~ty~~N~---------~~~~~~~DI~~i~~~~~~~~D~l~ggpPC   71 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNH---------SAKLIKGDISKISSDEFPKCDGIIGGPPS   71 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTC-EEEEEEECCTTTHHHHHHHC---------CSEEEESCGGGCCGGGSCCCSEEECCCCG
T ss_pred             eEEEeCcCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHHC---------CCCcccCChhhCCHhhCCcccEEEecCCC
Confidence            699999999999999999874 35789999998887777652         235778999876422 2468999864322


Q ss_pred             c---------cCCChH-HHHHHH---HHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCC
Q 019957          248 H---------CWPSPS-NAVAEI---SRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       248 ~---------h~~d~~-~~l~~~---~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      +         -..|+. .++.++   .+.++|.  +++.+....     + .        .+...-..+.+...|++.|+
T Consensus        72 Q~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk--~~~~ENV~g-----l-~--------~~~~~~~~~~i~~~l~~~GY  135 (331)
T 3ubt_Y           72 QSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKG-----M-M--------AQRHNKAVQEFIQEFDNAGY  135 (331)
T ss_dssp             GGTEETTEECCTTCGGGHHHHHHHHHHHHHCCS--EEEEEECCG-----G-G--------GCTTSHHHHHHHHHHHHHTE
T ss_pred             CCcCCCCCccCCCCchhHHHHHHHHHHhccCCe--EEEeeeecc-----c-c--------cccccchhhhhhhhhccCCc
Confidence            1         234554 344444   3445775  344443321     0 0        01111234577788899999


Q ss_pred             cEEEE
Q 019957          315 TNYTS  319 (333)
Q Consensus       315 ~~v~~  319 (333)
                      .+...
T Consensus       136 ~v~~~  140 (331)
T 3ubt_Y          136 DVHII  140 (331)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76543

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=91.96  E-value=0.78  Score=42.89  Aligned_cols=95  Identities=16%  Similarity=0.213  Sum_probs=62.7

Q ss_pred             cccCCCeEEEEcC-C-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--------
Q 019957          163 KSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------  232 (333)
Q Consensus       163 ~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------  232 (333)
                      ...++.+||=+|+ | .|.++..+++.. +.++++++.++..++.+++.    |    . -.++...-.+..        
T Consensus       225 ~~~~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~~~~~~~~~l----G----a-~~vi~~~~~d~~~~~~~~~~  294 (456)
T 3krt_A          225 GMKQGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSPQKAEICRAM----G----A-EAIIDRNAEGYRFWKDENTQ  294 (456)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH----T----C-CEEEETTTTTCCSEEETTEE
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHhh----C----C-cEEEecCcCccccccccccc
Confidence            4567889999997 4 388888888764 45899999899888888653    1    1 112211111110        


Q ss_pred             ---------------CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          233 ---------------FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       233 ---------------~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                                     .....+|+|+-.-.       ...+....+.|++||.+++..
T Consensus       295 ~~~~~~~~~~~i~~~t~g~g~Dvvid~~G-------~~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          295 DPKEWKRFGKRIRELTGGEDIDIVFEHPG-------RETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             CHHHHHHHHHHHHHHHTSCCEEEEEECSC-------HHHHHHHHHHEEEEEEEEESC
T ss_pred             chHHHHHHHHHHHHHhCCCCCcEEEEcCC-------chhHHHHHHHhhCCcEEEEEe
Confidence                           01247998875432       246888899999999998854

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=91.89  E-value=0.33  Score=43.11  Aligned_cols=95  Identities=11%  Similarity=0.075  Sum_probs=60.9

Q ss_pred             hcccCCCeEEEEcC--CcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-------
Q 019957          162 FKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------  232 (333)
Q Consensus       162 l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------  232 (333)
                      ....++.+||-.|+  |.|..+..+++.. +.+|+++|.++..++.+++.    +    .. ..+  |..+..       
T Consensus       136 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~----g----~~-~~~--~~~~~~~~~~~~~  203 (327)
T 1qor_A          136 YEIKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKA----G----AW-QVI--NYREEDLVERLKE  203 (327)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH----T----CS-EEE--ETTTSCHHHHHHH
T ss_pred             hCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc----C----CC-EEE--ECCCccHHHHHHH
Confidence            34567889999994  4466666655542 23999999998888777652    1    11 122  222111       


Q ss_pred             -CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                       .....+|+|+....       ...++.+.+.|++||++++...
T Consensus       204 ~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          204 ITGGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             HTTTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEECCC
T ss_pred             HhCCCCceEEEECCc-------hHHHHHHHHHhcCCCEEEEEec
Confidence             11236999986543       2347888999999999887653

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=91.82  E-value=2.1  Score=36.71  Aligned_cols=70  Identities=13%  Similarity=0.086  Sum_probs=49.0

Q ss_pred             CeEEEEcCCcCHHHHHHHH----hCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957          168 GLLVDVSCGSGLFSRKFAK----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (333)
Q Consensus       168 ~~vLDiGcG~G~~~~~l~~----~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (333)
                      .+||=.|+  |.++..+.+    .+.  +|++++.++.......          ..++.++.+|+.++.  -..+|+|+.
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~----------~~~~~~~~~D~~d~~--~~~~d~vi~   69 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGW--RIIGTSRNPDQMEAIR----------ASGAEPLLWPGEEPS--LDGVTHLLI   69 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTC--EEEEEESCGGGHHHHH----------HTTEEEEESSSSCCC--CTTCCEEEE
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCC--EEEEEEcChhhhhhHh----------hCCCeEEEecccccc--cCCCCEEEE
Confidence            57999995  766665554    444  8999999876544332          236899999998866  457899998


Q ss_pred             ccccccCCCh
Q 019957          244 GAALHCWPSP  253 (333)
Q Consensus       244 ~~vl~h~~d~  253 (333)
                      ........++
T Consensus        70 ~a~~~~~~~~   79 (286)
T 3ius_A           70 STAPDSGGDP   79 (286)
T ss_dssp             CCCCBTTBCH
T ss_pred             CCCccccccH
Confidence            7665544444

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=91.61  E-value=0.6  Score=42.03  Aligned_cols=95  Identities=11%  Similarity=-0.021  Sum_probs=61.1

Q ss_pred             hcccCCCeEEEEcC--CcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-------
Q 019957          162 FKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------  232 (333)
Q Consensus       162 l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------  232 (333)
                      ....++.+||-+|+  |.|..+..+++.. +.+|+++|.++..++.+++.    |    .. ..+  |..+..       
T Consensus       158 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~----g----~~-~~~--~~~~~~~~~~~~~  225 (354)
T 2j8z_A          158 GNVQAGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEKL----G----AA-AGF--NYKKEDFSEATLK  225 (354)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH----T----CS-EEE--ETTTSCHHHHHHH
T ss_pred             cCCCCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc----C----Cc-EEE--ecCChHHHHHHHH
Confidence            34567889999984  4477766666653 34999999999888877542    1    11 112  222111       


Q ss_pred             -CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                       .....+|+|+....-     +  .+....+.|++||++++...
T Consensus       226 ~~~~~~~d~vi~~~G~-----~--~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          226 FTKGAGVNLILDCIGG-----S--YWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             HTTTSCEEEEEESSCG-----G--GHHHHHHHEEEEEEEEECCC
T ss_pred             HhcCCCceEEEECCCc-----h--HHHHHHHhccCCCEEEEEec
Confidence             112469998865432     1  47788899999999988654

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=91.58  E-value=0.27  Score=44.08  Aligned_cols=95  Identities=14%  Similarity=0.069  Sum_probs=62.1

Q ss_pred             hhcccCCCeEEEEcCCc-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC-----
Q 019957          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYS-GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----  233 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-----  233 (333)
                      ..+. ++.+||-+|+|. |.++..+++.. +. +|+++|.++..++.+++.  .        -.++  |..+..+     
T Consensus       160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l--a--------~~v~--~~~~~~~~~~~~  225 (343)
T 2dq4_A          160 GSGV-SGKSVLITGAGPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY--A--------DRLV--NPLEEDLLEVVR  225 (343)
T ss_dssp             TTCC-TTSCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT--C--------SEEE--CTTTSCHHHHHH
T ss_pred             hCCC-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh--H--------Hhcc--CcCccCHHHHHH
Confidence            3445 788999999865 77777887765 44 899999998877666542  1        1111  2211110     


Q ss_pred             --CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          234 --ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       234 --~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                        ....+|+|+-...     . ...++...+.|+++|++++...
T Consensus       226 ~~~~~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          226 RVTGSGVEVLLEFSG-----N-EAAIHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             HHHSSCEEEEEECSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred             HhcCCCCCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEec
Confidence              0236899875432     2 3457889999999999887643

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=91.46  E-value=0.72  Score=41.29  Aligned_cols=94  Identities=14%  Similarity=0.023  Sum_probs=61.7

Q ss_pred             hhcccCCCeEEEEcC-C-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC------
Q 019957          161 YFKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (333)
Q Consensus       161 ~l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (333)
                      .....++.+||-+|+ | .|.++..+++.. +.+|+++ .++..++.+++.    |      ...+. +-.++.      
T Consensus       145 ~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~~l----G------a~~i~-~~~~~~~~~~~~  211 (343)
T 3gaz_A          145 RAQVQDGQTVLIQGGGGGVGHVAIQIALAR-GARVFAT-ARGSDLEYVRDL----G------ATPID-ASREPEDYAAEH  211 (343)
T ss_dssp             TTCCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ECHHHHHHHHHH----T------SEEEE-TTSCHHHHHHHH
T ss_pred             hcCCCCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEE-eCHHHHHHHHHc----C------CCEec-cCCCHHHHHHHH
Confidence            345567889999994 4 488887777764 4489999 788887777653    1      22222 212111      


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      .....+|+|+-...     .  ..+....+.|+++|.+++..
T Consensus       212 ~~~~g~D~vid~~g-----~--~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          212 TAGQGFDLVYDTLG-----G--PVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             HTTSCEEEEEESSC-----T--HHHHHHHHHEEEEEEEEESC
T ss_pred             hcCCCceEEEECCC-----c--HHHHHHHHHHhcCCeEEEEc
Confidence            11246999885432     2  46888889999999998754

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=91.39  E-value=3.4  Score=31.38  Aligned_cols=91  Identities=11%  Similarity=0.090  Sum_probs=58.4

Q ss_pred             CCeEEEEcCCc-CH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC----CCCCCcce
Q 019957          167 GGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA  240 (333)
Q Consensus       167 ~~~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~  240 (333)
                      ..+|+=+|+|. |. ++..|.+.+.  +|+++|.+++.++.+++          .++.++.+|..+..    ..-..+|+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~--~v~vid~~~~~~~~~~~----------~g~~~i~gd~~~~~~l~~a~i~~ad~   74 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI--PLVVIETSRTRVDELRE----------RGVRAVLGNAANEEIMQLAHLECAKW   74 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHH----------TTCEEEESCTTSHHHHHHTTGGGCSE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHH----------cCCCEEECCCCCHHHHHhcCcccCCE
Confidence            34799999976 54 3445555554  99999999998877664          25678888886532    11246888


Q ss_pred             EEeccccccCCChH--HHHHHHHHhccCCcEEEEEE
Q 019957          241 VHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       241 V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~  274 (333)
                      |+...     ++..  ..+-...+.+.|+..++...
T Consensus        75 vi~~~-----~~~~~n~~~~~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           75 LILTI-----PNGYEAGEIVASARAKNPDIEIIARA  105 (140)
T ss_dssp             EEECC-----SCHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred             EEEEC-----CChHHHHHHHHHHHHHCCCCeEEEEE
Confidence            77542     2332  22344556677888766655

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=91.30  E-value=0.62  Score=41.47  Aligned_cols=95  Identities=14%  Similarity=0.121  Sum_probs=61.8

Q ss_pred             hcccCCCeEEEEcC--CcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-------
Q 019957          162 FKSAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------  232 (333)
Q Consensus       162 l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------  232 (333)
                      ....++.+||-.|+  |.|..+..+++.. +.+|+++|.+++.++.+++.    +    .. ..+  |..+..       
T Consensus       141 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~----g----~~-~~~--d~~~~~~~~~i~~  208 (333)
T 1wly_A          141 HKVKPGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARKL----G----CH-HTI--NYSTQDFAEVVRE  208 (333)
T ss_dssp             SCCCTTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH----T----CS-EEE--ETTTSCHHHHHHH
T ss_pred             hCCCCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----C----CC-EEE--ECCCHHHHHHHHH
Confidence            34567889999995  5577776666653 34999999999887777652    1    11 112  222211       


Q ss_pred             -CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                       .....+|+|+....-       ..++.+.+.|++||+++....
T Consensus       209 ~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~g~  245 (333)
T 1wly_A          209 ITGGKGVDVVYDSIGK-------DTLQKSLDCLRPRGMCAAYGH  245 (333)
T ss_dssp             HHTTCCEEEEEECSCT-------TTHHHHHHTEEEEEEEEECCC
T ss_pred             HhCCCCCeEEEECCcH-------HHHHHHHHhhccCCEEEEEec
Confidence             012368998865431       347888899999999887653

>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8

Probab=91.25  E-value=0.12  Score=33.19  Aligned_cols=36  Identities=19%  Similarity=0.323  Sum_probs=24.8

Q ss_pred             cccccCeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957           54 LELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        54 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      ..+.....-||.||+.+.....         .+.+.|..||..+.
T Consensus        12 gki~~~~~fCPkCG~~~~ma~~---------~dr~~C~kCgyt~~   47 (55)
T 2k4x_A           12 GKLVRKHRFCPRCGPGVFLAEH---------ADRYSCGRCGYTEF   47 (55)
T ss_dssp             CCCCCSSCCCTTTTTTCCCEEC---------SSEEECTTTCCCEE
T ss_pred             CEEEEccccCcCCCCceeEecc---------CCEEECCCCCCEEE
Confidence            3455667889999996532211         14899999988763

>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1

Probab=91.06  E-value=0.11  Score=37.01  Aligned_cols=28  Identities=25%  Similarity=0.593  Sum_probs=21.6

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      +...||.|++++...+           +.+.|..|+..|
T Consensus        31 M~~~CP~Cq~eL~~~g-----------~~~hC~~C~~~f   58 (101)
T 2jne_A           31 MELHCPQCQHVLDQDN-----------GHARCRSCGEFI   58 (101)
T ss_dssp             CCCBCSSSCSBEEEET-----------TEEEETTTCCEE
T ss_pred             ccccCccCCCcceecC-----------CEEECccccchh
Confidence            3489999999997754           367788888766

>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=90.95  E-value=0.1  Score=32.80  Aligned_cols=41  Identities=17%  Similarity=0.350  Sum_probs=22.6

Q ss_pred             cCeecccCCCcccccc-CCCCccccccccCceeeCCCCcccc
Q 019957           58 GDLFSCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        58 ~~~l~CP~C~~~l~~~-~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      .....||.|++.-... .....+.++-..-.+.|.+||+.+.
T Consensus         7 t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~   48 (50)
T 1tfi_A            7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK   48 (50)
T ss_dssp             CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred             eCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence            4567899999842110 0001111122234688999999763

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=90.76  E-value=0.74  Score=42.68  Aligned_cols=46  Identities=11%  Similarity=0.244  Sum_probs=34.9

Q ss_pred             CCeEEEEcCCcCHHHHHHHHh----CC-CCeEEEEeCCHHHHHHHHHHHHh
Q 019957          167 GGLLVDVSCGSGLFSRKFAKS----GT-YSGVVALDFSENMLRQCYDFIKQ  212 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~----~~-~~~v~g~D~s~~~~~~a~~~~~~  212 (333)
                      ...|+|+|.|+|.+...+.+.    .+ ..+++.+|+|+...+.-++++..
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            468999999999987776543    21 23799999999877776766654

>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=90.73  E-value=0.079  Score=36.87  Aligned_cols=30  Identities=23%  Similarity=0.740  Sum_probs=22.2

Q ss_pred             eecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      .+.||.|+..-....         -.|+++|..|+..+.
T Consensus        35 ky~CpfCGk~~vkR~---------a~GIW~C~kCg~~~A   64 (83)
T 3j21_i           35 KHTCPVCGRKAVKRI---------STGIWQCQKCGATFA   64 (83)
T ss_dssp             CBCCSSSCSSCEEEE---------ETTEEEETTTCCEEE
T ss_pred             ccCCCCCCCceeEec---------CcCeEEcCCCCCEEe
Confidence            568999998643322         137999999998874

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=90.62  E-value=0.34  Score=42.53  Aligned_cols=93  Identities=17%  Similarity=0.077  Sum_probs=59.3

Q ss_pred             ccCCCeEEEEcC--CcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC-CCCCCCCCCcce
Q 019957          164 SAQGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CRLPFASGFVDA  240 (333)
Q Consensus       164 ~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~  240 (333)
                      ..++.+||-+|+  |.|..+..+++.. +.+|+++|.++..++.+++.    |    .. ..+..+- .++.-.-+.+|+
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~----g----a~-~~~~~~~~~~~~~~~~~~d~  192 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLAL----G----AE-EAATYAEVPERAKAWGGLDL  192 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHT----T----CS-EEEEGGGHHHHHHHTTSEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc----C----CC-EEEECCcchhHHHHhcCceE
Confidence            557889999998  3477777777764 34999999998877777541    1    11 1222110 111000046999


Q ss_pred             EEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      |+. ..     .  ..++...+.|+++|+++...
T Consensus       193 vid-~g-----~--~~~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          193 VLE-VR-----G--KEVEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             EEE-CS-----C--TTHHHHHTTEEEEEEEEEC-
T ss_pred             EEE-CC-----H--HHHHHHHHhhccCCEEEEEe
Confidence            886 32     1  24788899999999988754

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=90.38  E-value=1.3  Score=39.80  Aligned_cols=98  Identities=10%  Similarity=-0.020  Sum_probs=63.1

Q ss_pred             HhhcccCC--CeEEEEcC--CcCHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--
Q 019957          160 EYFKSAQG--GLLVDVSC--GSGLFSRKFAKSGTYS-GVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (333)
Q Consensus       160 ~~l~~~~~--~~vLDiGc--G~G~~~~~l~~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--  232 (333)
                      +.....++  .+||-.|+  |.|..+..+++.. +. +|+++|.++..++.+++.+   |    .. ..+  |..+..  
T Consensus       152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~~~---g----~~-~~~--d~~~~~~~  220 (357)
T 2zb4_A          152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTSEL---G----FD-AAI--NYKKDNVA  220 (357)
T ss_dssp             HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTS---C----CS-EEE--ETTTSCHH
T ss_pred             HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHc---C----Cc-eEE--ecCchHHH
Confidence            34455667  89999997  3477777766664 44 8999999987777665421   1    11 112  322211  


Q ss_pred             -----CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          233 -----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 -----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                           ...+.+|+|+....       ...++.+.+.|++||++++...
T Consensus       221 ~~~~~~~~~~~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          221 EQLRESCPAGVDVYFDNVG-------GNISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             HHHHHHCTTCEEEEEESCC-------HHHHHHHHHTEEEEEEEEECCC
T ss_pred             HHHHHhcCCCCCEEEECCC-------HHHHHHHHHHhccCcEEEEECC
Confidence                 11126899886544       2568889999999999987643

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=90.28  E-value=1.4  Score=40.84  Aligned_cols=96  Identities=18%  Similarity=0.155  Sum_probs=61.9

Q ss_pred             hcccCCCeEEEEcC-C-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-------
Q 019957          162 FKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------  232 (333)
Q Consensus       162 l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------  232 (333)
                      ....++.+||=+|+ | .|..+..+++.. +.++++++.++..++.+++.    |   . . .++...-.++.       
T Consensus       216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~-Ga~vi~~~~~~~~~~~~~~l----G---a-~-~~i~~~~~~~~~~~~~~~  285 (447)
T 4a0s_A          216 AQMKQGDIVLIWGASGGLGSYAIQFVKNG-GGIPVAVVSSAQKEAAVRAL----G---C-D-LVINRAELGITDDIADDP  285 (447)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T---C-C-CEEEHHHHTCCTTGGGCH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc----C---C-C-EEEecccccccccccccc
Confidence            34567889999997 4 377777777764 45899999999888877652    2   1 1 11211101100       


Q ss_pred             ----------------CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          233 ----------------FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       233 ----------------~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                                      .....+|+|+-...       ...++...+.|++||.+++..
T Consensus       286 ~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G-------~~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          286 RRVVETGRKLAKLVVEKAGREPDIVFEHTG-------RVTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCSEEEECSC-------HHHHHHHHHHSCTTCEEEESC
T ss_pred             cccchhhhHHHHHHHHHhCCCceEEEECCC-------chHHHHHHHHHhcCCEEEEEe
Confidence                            01246899886443       135788889999999998864

>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z

Probab=89.96  E-value=0.097  Score=38.74  Aligned_cols=31  Identities=23%  Similarity=0.623  Sum_probs=22.2

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      ....||.|+..-.....         .++++|..|+..|.
T Consensus        59 akytCPfCGk~~vKR~a---------vGIW~C~~Cgk~fA   89 (116)
T 3cc2_Z           59 EDHACPNCGEDRVDRQG---------TGIWQCSYCDYKFT   89 (116)
T ss_dssp             SCEECSSSCCEEEEEEE---------TTEEEETTTCCEEE
T ss_pred             cCCcCCCCCCceeEecC---------ceeEECCCCCCEEE
Confidence            46789999984332221         37999999998874

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=89.80  E-value=0.22  Score=45.59  Aligned_cols=102  Identities=18%  Similarity=0.153  Sum_probs=57.2

Q ss_pred             cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (333)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (333)
                      .++.+|+=+|+|. |......++.. +.+|+++|.++..++.+++.+..       .+.....+..++.-.-...|+|+.
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~~-Ga~V~~~d~~~~~l~~~~~~~g~-------~~~~~~~~~~~l~~~l~~aDvVi~  237 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANGM-GATVTVLDINIDKLRQLDAEFCG-------RIHTRYSSAYELEGAVKRADLVIG  237 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTT-------SSEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhcCC-------eeEeccCCHHHHHHHHcCCCEEEE
Confidence            3578999999975 55554444443 33999999999887777653211       111111111111100125799887


Q ss_pred             ccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       244 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      .-.......+.-+.++..+.+||||+++...
T Consensus       238 ~~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          238 AVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             CCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             CCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            4322221112222456777899999887654

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=89.60  E-value=2.5  Score=37.39  Aligned_cols=91  Identities=14%  Similarity=0.180  Sum_probs=58.2

Q ss_pred             CeEEEEcCCc-C-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957          168 GLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (333)
Q Consensus       168 ~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (333)
                      .+|.=||+|. | .++..+.+.+...+|+++|.++..++.+.+    .|     .+.-...+..++  .-...|+|+..-
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G-----~~~~~~~~~~~~--~~~~aDvVilav  102 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LG-----IIDEGTTSIAKV--EDFSPDFVMLSS  102 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TT-----SCSEEESCTTGG--GGGCCSEEEECS
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CC-----CcchhcCCHHHH--hhccCCEEEEeC
Confidence            5899999986 4 566677777654589999999988777654    12     111122333320  123579988754


Q ss_pred             ccccCCChHHHHHHHHHhccCCcEEEE
Q 019957          246 ALHCWPSPSNAVAEISRILRSGGVFVG  272 (333)
Q Consensus       246 vl~h~~d~~~~l~~~~r~LkpgG~l~i  272 (333)
                      -...   ...+++++...+++|.+++-
T Consensus       103 p~~~---~~~vl~~l~~~l~~~~iv~d  126 (314)
T 3ggo_A          103 PVRT---FREIAKKLSYILSEDATVTD  126 (314)
T ss_dssp             CGGG---HHHHHHHHHHHSCTTCEEEE
T ss_pred             CHHH---HHHHHHHHhhccCCCcEEEE
Confidence            3332   35678888888998876544

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=89.57  E-value=0.18  Score=34.01  Aligned_cols=30  Identities=17%  Similarity=0.491  Sum_probs=22.7

Q ss_pred             ccCeecccCCCccccccCCCCccccccccCceeeCCCCcc
Q 019957           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (333)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~   96 (333)
                      ....+.|+.|+..+.....          ...+|+.||+.
T Consensus        25 ~~v~Y~C~~CG~~~e~~~~----------d~irCp~CG~R   54 (70)
T 1twf_L           25 ATLKYICAECSSKLSLSRT----------DAVRCKDCGHR   54 (70)
T ss_dssp             CCCCEECSSSCCEECCCTT----------STTCCSSSCCC
T ss_pred             ceEEEECCCCCCcceeCCC----------CCccCCCCCce
Confidence            4567899999998655432          46799999983

>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}

Probab=89.40  E-value=0.17  Score=35.02  Aligned_cols=26  Identities=35%  Similarity=0.990  Sum_probs=17.2

Q ss_pred             ecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      ..||.|++++....           +..+|..|+..|
T Consensus         3 ~~CP~C~~~l~~~~-----------~~~~C~~C~~~~   28 (81)
T 2jrp_A            3 ITCPVCHHALERNG-----------DTAHCETCAKDF   28 (81)
T ss_dssp             CCCSSSCSCCEECS-----------SEEECTTTCCEE
T ss_pred             CCCCCCCCccccCC-----------CceECccccccC
Confidence            67888888876543           255566666655

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=89.38  E-value=4.2  Score=35.12  Aligned_cols=78  Identities=17%  Similarity=0.163  Sum_probs=54.8

Q ss_pred             CCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-C----C----
Q 019957          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P----F----  233 (333)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p----~----  233 (333)
                      .+++||=.|++.|   .++..|++.|.  +|++++.++..++.+.+.+...+   ..++.++.+|+.+. .    +    
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~Dl~~~~~~v~~~~~~~   85 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNSN---HENVVFHQLDVTDPIATMSSLADFI   85 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT---CCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CCceEEEEccCCCcHHHHHHHHHHH
Confidence            3567888887654   34555666665  99999999988777777766544   45799999999875 2    0    


Q ss_pred             --CCCCcceEEeccccc
Q 019957          234 --ASGFVDAVHAGAALH  248 (333)
Q Consensus       234 --~~~~fD~V~~~~vl~  248 (333)
                        .-+..|+++.+..+.
T Consensus        86 ~~~~g~iD~lv~nAg~~  102 (311)
T 3o26_A           86 KTHFGKLDILVNNAGVA  102 (311)
T ss_dssp             HHHHSSCCEEEECCCCC
T ss_pred             HHhCCCCCEEEECCccc
Confidence              014789999876653

>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y

Probab=89.27  E-value=0.11  Score=37.61  Aligned_cols=32  Identities=22%  Similarity=0.707  Sum_probs=22.9

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCccccC
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~   99 (333)
                      ..+.||.|+..-.....         .|+++|..|+..+.-
T Consensus        35 aky~CpfCgk~~vKR~a---------~GIW~C~kCg~~~AG   66 (103)
T 4a17_Y           35 AKYGCPFCGKVAVKRAA---------VGIWKCKPCKKIIAG   66 (103)
T ss_dssp             SCEECTTTCCEEEEEEE---------TTEEEETTTTEEEEC
T ss_pred             cCCCCCCCCCceeeecC---------cceEEcCCCCCEEeC
Confidence            45789999986433221         379999999987743

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=89.10  E-value=0.31  Score=44.22  Aligned_cols=102  Identities=18%  Similarity=0.180  Sum_probs=58.4

Q ss_pred             CCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      ++.+||=+|+|. |.....++... +.+|+++|.++..++.+.+....       .+..+..+..++.-.-..+|+|+..
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~-Ga~V~v~dr~~~r~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~DvVI~~  237 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGS-------RVELLYSNSAEIETAVAEADLLIGA  237 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGG-------GSEEEECCHHHHHHHHHTCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhhCc-------eeEeeeCCHHHHHHHHcCCCEEEEC
Confidence            357999999975 55555544443 23999999999888777664322       1222211111111001258999865


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      -.......|.-+.++..+.+++||+++....
T Consensus       238 ~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          238 VLVPGRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             CCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             CCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence            4443322222123456678999998877543

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=89.07  E-value=3.1  Score=35.31  Aligned_cols=78  Identities=23%  Similarity=0.336  Sum_probs=55.9

Q ss_pred             CCCeEEEEcC-CcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CC--
Q 019957          166 QGGLLVDVSC-GSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--  234 (333)
Q Consensus       166 ~~~~vLDiGc-G~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--  234 (333)
                      .++++|=.|+ |.|   .++..|.+.+.  +|+.+|.+...++...+.+...+   ..++.++.+|+.+..     +.  
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~   95 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLADLG---LGRVEAVVCDVTSTEAVDALITQT   95 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTC---SSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC---CCceEEEEeCCCCHHHHHHHHHHH
Confidence            3668898887 554   35667777765  89999999988877777765543   458999999997742     10  


Q ss_pred             ---CCCcceEEeccccc
Q 019957          235 ---SGFVDAVHAGAALH  248 (333)
Q Consensus       235 ---~~~fD~V~~~~vl~  248 (333)
                         -+..|+++.+..+.
T Consensus        96 ~~~~g~id~li~~Ag~~  112 (266)
T 3o38_A           96 VEKAGRLDVLVNNAGLG  112 (266)
T ss_dssp             HHHHSCCCEEEECCCCC
T ss_pred             HHHhCCCcEEEECCCcC
Confidence               13689999876653

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=89.06  E-value=2.3  Score=36.14  Aligned_cols=106  Identities=16%  Similarity=0.262  Sum_probs=68.4

Q ss_pred             CCCeEEEEcCC--c--C-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CC-
Q 019957          166 QGGLLVDVSCG--S--G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-  234 (333)
Q Consensus       166 ~~~~vLDiGcG--~--G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-  234 (333)
                      .++++|=.|++  .  | .++..|++.+.  +|+.++.+....+...+.....+   ..++.++.+|+.+..     +. 
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~   80 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEKSVHELAGTLD---RNDSIILPCDVTNDAEIETCFAS   80 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHTSS---SCCCEEEECCCSSSHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHHhcC---CCCceEEeCCCCCHHHHHHHHHH
Confidence            35688999865  3  3 35667777765  89999988766555555554433   347899999998753     10 


Q ss_pred             ----CCCcceEEecccccc----C-----CChH--------------HHHHHHHHhccCCcEEEEEEec
Q 019957          235 ----SGFVDAVHAGAALHC----W-----PSPS--------------NAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       235 ----~~~fD~V~~~~vl~h----~-----~d~~--------------~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                          -+.+|+++.+..+.+    .     .+..              .+++.+...++++|.++.....
T Consensus        81 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~  149 (266)
T 3oig_A           81 IKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYL  149 (266)
T ss_dssp             HHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred             HHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence                136898887665432    1     1111              2455666777888988877644

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=89.02  E-value=2.1  Score=36.38  Aligned_cols=101  Identities=21%  Similarity=0.286  Sum_probs=66.1

Q ss_pred             CCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC---------
Q 019957          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---------  233 (333)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---------  233 (333)
                      .++++|=.|++.|   .++..|++.|.  +|+.+|.++..++...+.+       ..++.++.+|+.+..-         
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEF-------GPRVHALRSDIADLNEIAVLGAAAG   77 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------GGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCcceEEEccCCCHHHHHHHHHHHH
Confidence            4668898887665   34556666665  9999999988776665543       2368889999876420         


Q ss_pred             -CCCCcceEEeccccccCC-----Ch--------------HHHHHHHHHhccCCcEEEEEEe
Q 019957          234 -ASGFVDAVHAGAALHCWP-----SP--------------SNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       234 -~~~~fD~V~~~~vl~h~~-----d~--------------~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                       .-+..|+++.+..+....     ++              ..+++.+...++++|.++....
T Consensus        78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  139 (255)
T 4eso_A           78 QTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS  139 (255)
T ss_dssp             HHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence             014789998766543321     11              1235566667777888777654

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=88.99  E-value=3.7  Score=36.19  Aligned_cols=79  Identities=15%  Similarity=0.210  Sum_probs=55.6

Q ss_pred             CCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CC---
Q 019957          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---  234 (333)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---  234 (333)
                      .+.+||=.|++.|   .++..|++.|.  +|++++.++..++...+.+...+.  ..++.++.+|+.+..     +.   
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~   82 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAEGS--GPEVMGVQLDVASREGFKMAADEVE   82 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CCeEEEEECCCCCHHHHHHHHHHHH
Confidence            4568999997765   35566666665  899999999888777776655431  337889999997642     10   


Q ss_pred             --CCCcceEEeccccc
Q 019957          235 --SGFVDAVHAGAALH  248 (333)
Q Consensus       235 --~~~fD~V~~~~vl~  248 (333)
                        -+..|+++.+..+.
T Consensus        83 ~~~g~id~lv~nAg~~   98 (319)
T 3ioy_A           83 ARFGPVSILCNNAGVN   98 (319)
T ss_dssp             HHTCCEEEEEECCCCC
T ss_pred             HhCCCCCEEEECCCcC
Confidence              14689999876654

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=88.84  E-value=1.4  Score=39.95  Aligned_cols=95  Identities=14%  Similarity=0.087  Sum_probs=57.7

Q ss_pred             ccCCCeEEEEc-CC-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---CCCCCc
Q 019957          164 SAQGGLLVDVS-CG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFV  238 (333)
Q Consensus       164 ~~~~~~vLDiG-cG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~f  238 (333)
                      ..++.+||=+| +| .|.++..+++.. +.+|++++ ++..++.+++    .|    .. .++..+-.++.   .....+
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~-Ga~Vi~~~-~~~~~~~~~~----lG----a~-~v~~~~~~~~~~~~~~~~g~  249 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAW-DAHVTAVC-SQDASELVRK----LG----AD-DVIDYKSGSVEEQLKSLKPF  249 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHH----TT----CS-EEEETTSSCHHHHHHTSCCB
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEe-ChHHHHHHHH----cC----CC-EEEECCchHHHHHHhhcCCC
Confidence            45688999999 45 488888877764 34899998 6666666643    22    11 12221111110   011468


Q ss_pred             ceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      |+|+-..     ..+...+....+.|++||+++...
T Consensus       250 D~vid~~-----g~~~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          250 DFILDNV-----GGSTETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             SEEEESS-----CTTHHHHGGGGBCSSSCCEEEESC
T ss_pred             CEEEECC-----CChhhhhHHHHHhhcCCcEEEEeC
Confidence            9887543     233344677788899999998754

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=88.73  E-value=2.4  Score=38.05  Aligned_cols=98  Identities=17%  Similarity=0.100  Sum_probs=58.6

Q ss_pred             hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC---CC-CCC-C
Q 019957          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC---RL-PFA-S  235 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~---~l-p~~-~  235 (333)
                      .+..++.+||=+|+|. |.++..+++...+.+|+++|.++..++.+++.    |     .-.++...-.   .+ ... .
T Consensus       182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~l----G-----a~~vi~~~~~~~~~v~~~~~g  252 (359)
T 1h2b_A          182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----G-----ADHVVDARRDPVKQVMELTRG  252 (359)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----T-----CSEEEETTSCHHHHHHHHTTT
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----C-----CCEEEeccchHHHHHHHHhCC
Confidence            4556788999999864 66777776653134899999999888887652    1     1122221111   00 011 2


Q ss_pred             CCcceEEeccccccCCChH-HHHHHHHHhccCCcEEEEEEe
Q 019957          236 GFVDAVHAGAALHCWPSPS-NAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~-~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ..+|+|+-.-     ..+. ..+....+.  +||++++...
T Consensus       253 ~g~Dvvid~~-----G~~~~~~~~~~~~~--~~G~~v~~g~  286 (359)
T 1h2b_A          253 RGVNVAMDFV-----GSQATVDYTPYLLG--RMGRLIIVGY  286 (359)
T ss_dssp             CCEEEEEESS-----CCHHHHHHGGGGEE--EEEEEEECCC
T ss_pred             CCCcEEEECC-----CCchHHHHHHHhhc--CCCEEEEEeC
Confidence            2699987543     2222 145666666  8999887653

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=88.71  E-value=4.1  Score=41.92  Aligned_cols=71  Identities=20%  Similarity=0.232  Sum_probs=51.0

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC----------------
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR----------------  230 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~----------------  230 (333)
                      ..++||+-||.|.++.-+...|....+.++|+++.+.+.-+.+        .++..++.+|+..                
T Consensus       540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N--------~p~~~~~~~DI~~l~~~~~~~di~~~~~~  611 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLN--------NPGSTVFTEDCNILLKLVMAGETTNSRGQ  611 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHH--------CTTSEEECSCHHHHHHHHHHTCSBCTTCC
T ss_pred             CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHh--------CCCCccccccHHHHhhhccchhhhhhhhh
Confidence            4579999999999999999887423688999999988877765        3455566555421                


Q ss_pred             -CCCCCCCcceEEeccc
Q 019957          231 -LPFASGFVDAVHAGAA  246 (333)
Q Consensus       231 -lp~~~~~fD~V~~~~v  246 (333)
                       +| ..+.+|+|+...-
T Consensus       612 ~lp-~~~~vDll~GGpP  627 (1002)
T 3swr_A          612 RLP-QKGDVEMLCGGPP  627 (1002)
T ss_dssp             BCC-CTTTCSEEEECCC
T ss_pred             hcc-cCCCeeEEEEcCC
Confidence             12 1347899987543

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=88.66  E-value=0.79  Score=40.66  Aligned_cols=95  Identities=12%  Similarity=0.099  Sum_probs=59.3

Q ss_pred             ccCCC-eEEEEcC-C-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc-cC--CCC-CCCCC
Q 019957          164 SAQGG-LLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DV--CRL-PFASG  236 (333)
Q Consensus       164 ~~~~~-~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~--~~l-p~~~~  236 (333)
                      ..++. +||-+|+ | .|.++..+++.. +.++++++.+++.++.+++.    |   . . .++.. +.  ... ....+
T Consensus       147 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~l----G---a-~-~v~~~~~~~~~~~~~~~~~  216 (330)
T 1tt7_A          147 LSPEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQL----G---A-S-EVISREDVYDGTLKALSKQ  216 (330)
T ss_dssp             CCGGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHH----T---C-S-EEEEHHHHCSSCCCSSCCC
T ss_pred             cCCCCceEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----C---C-c-EEEECCCchHHHHHHhhcC
Confidence            34454 8999997 4 477777777653 24899999988777777652    1   1 1 12211 11  111 12234


Q ss_pred             CcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      .+|+|+-...     .  ..+....+.|++||++++...
T Consensus       217 ~~d~vid~~g-----~--~~~~~~~~~l~~~G~iv~~G~  248 (330)
T 1tt7_A          217 QWQGAVDPVG-----G--KQLASLLSKIQYGGSVAVSGL  248 (330)
T ss_dssp             CEEEEEESCC-----T--HHHHHHHTTEEEEEEEEECCC
T ss_pred             CccEEEECCc-----H--HHHHHHHHhhcCCCEEEEEec
Confidence            6898875432     2  358889999999999987643

>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*

Probab=88.46  E-value=0.13  Score=34.94  Aligned_cols=31  Identities=23%  Similarity=0.694  Sum_probs=22.0

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      ....||.|+..-.....         .+++.|..|+..+.
T Consensus        26 ~ky~C~fCgk~~vkR~a---------~GIW~C~~C~~~~A   56 (73)
T 1ffk_W           26 KKYKCPVCGFPKLKRAS---------TSIWVCGHCGYKIA   56 (73)
T ss_pred             cCccCCCCCCceeEEEE---------eEEEECCCCCcEEE
Confidence            45689999984333221         37999999998863

>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4

Probab=88.43  E-value=0.13  Score=36.06  Aligned_cols=42  Identities=17%  Similarity=0.336  Sum_probs=26.0

Q ss_pred             cccCeecccCCCccccccCCCCccccccccCceeeCCCCccccCc
Q 019957           56 LEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (333)
Q Consensus        56 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  100 (333)
                      -....|.||.|++.-.....-.   .....+.+.|..||..|...
T Consensus        19 ~L~t~F~CPfCnh~~sV~vkid---k~~~~g~l~C~~Cg~~~~~~   60 (85)
T 1wii_A           19 TLETQFTCPFCNHEKSCDVKMD---RARNTGVISCTVCLEEFQTP   60 (85)
T ss_dssp             CCSSCCCCTTTCCSSCEEEEEE---TTTTEEEEEESSSCCEEEEE
T ss_pred             CCCCeEcCCCCCCCCeEEEEEE---ccCCEEEEEcccCCCeEEec
Confidence            3557899999999631111000   01113689999999988553

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=88.42  E-value=3.8  Score=35.56  Aligned_cols=104  Identities=12%  Similarity=0.164  Sum_probs=67.2

Q ss_pred             CCCeEEEEcCCc----C-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----C--
Q 019957          166 QGGLLVDVSCGS----G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F--  233 (333)
Q Consensus       166 ~~~~vLDiGcG~----G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~--  233 (333)
                      .++++|=.|++.    | .++..|++.+.  +|+.++.++...+.+.+....     ..++.++.+|+.+..     +  
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~  102 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGA--ELAFTYQGDALKKRVEPLAEE-----LGAFVAGHCDVADAASIDAVFET  102 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTC--EEEEEECSHHHHHHHHHHHHH-----HTCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHh-----cCCceEEECCCCCHHHHHHHHHH
Confidence            467899999763    3 35667777765  899999987655555554444     236788999997642     1  


Q ss_pred             ---CCCCcceEEecccccc----C-----CCh--------------HHHHHHHHHhccCCcEEEEEEec
Q 019957          234 ---ASGFVDAVHAGAALHC----W-----PSP--------------SNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       234 ---~~~~fD~V~~~~vl~h----~-----~d~--------------~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                         .-+..|+++.+..+..    .     .+.              ..+++.+...++.+|.++.....
T Consensus       103 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~  171 (293)
T 3grk_A          103 LEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYY  171 (293)
T ss_dssp             HHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECG
T ss_pred             HHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeh
Confidence               0147899998765432    0     111              13456666777788988876643

>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1

Probab=88.19  E-value=0.23  Score=33.58  Aligned_cols=32  Identities=31%  Similarity=0.676  Sum_probs=23.1

Q ss_pred             eecccCCCccccccCCCCccccccccCceeeCCCCccccCcCC
Q 019957           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN  102 (333)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g  102 (333)
                      .+.|| |+..+......         ....|+ ||......+.
T Consensus         4 vv~C~-C~~~~~~~~~~---------kT~~C~-CG~~~~~~k~   35 (71)
T 1gh9_A            4 IFRCD-CGRALYSREGA---------KTRKCV-CGRTVNVKDR   35 (71)
T ss_dssp             EEEET-TSCCEEEETTC---------SEEEET-TTEEEECCSS
T ss_pred             EEECC-CCCEEEEcCCC---------cEEECC-CCCeeeeceE
Confidence            57899 99976554431         477899 9998866653

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=87.89  E-value=2.7  Score=38.22  Aligned_cols=112  Identities=8%  Similarity=0.040  Sum_probs=70.7

Q ss_pred             HHHHHhhccc-CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957          156 KMAQEYFKSA-QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (333)
Q Consensus       156 ~~~~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (333)
                      +++.+.+... .+++||.|+-+.|.++..++...    ++.+.=|--.....+.++..+++. ...+.+... .+.+   
T Consensus        27 ~~ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~~----~~~~~ds~~~~~~~~~n~~~~~~~-~~~~~~~~~-~~~~---   97 (375)
T 4dcm_A           27 EYLLQQLDDTEIRGPVLILNDAFGALSCALAEHK----PYSIGDSYISELATRENLRLNGID-ESSVKFLDS-TADY---   97 (375)
T ss_dssp             HHHHHTTTTCCCCSCEEEECCSSSHHHHHTGGGC----CEEEESCHHHHHHHHHHHHHTTCC-GGGSEEEET-TSCC---
T ss_pred             HHHHHhhhhccCCCCEEEECCCCCHHHHhhccCC----ceEEEhHHHHHHHHHHHHHHcCCC-ccceEeccc-cccc---
Confidence            4555554432 45689999999999998887553    344432666666667777777641 223555432 2333   


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      .+.||+|+.... .+.......|..+...|++|+.+++...+.
T Consensus        98 ~~~~~~v~~~lp-k~~~~l~~~L~~l~~~l~~~~~i~~~g~~~  139 (375)
T 4dcm_A           98 PQQPGVVLIKVP-KTLALLEQQLRALRKVVTSDTRIIAGAKAR  139 (375)
T ss_dssp             CSSCSEEEEECC-SCHHHHHHHHHHHHTTCCTTSEEEEEEEGG
T ss_pred             ccCCCEEEEEcC-CCHHHHHHHHHHHHhhCCCCCEEEEEeccc
Confidence            357999886332 222223456788888999999998877554

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=87.79  E-value=0.81  Score=40.57  Aligned_cols=95  Identities=13%  Similarity=0.090  Sum_probs=58.5

Q ss_pred             ccCCC-eEEEEcC-C-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc-cC-CC-C-CCCCC
Q 019957          164 SAQGG-LLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DV-CR-L-PFASG  236 (333)
Q Consensus       164 ~~~~~-~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~-~~-l-p~~~~  236 (333)
                      ..++. +||-+|+ | .|.++..+++.. +.++++++.++..++.+++.    |   . . .++.. +. .+ . ....+
T Consensus       146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~l----G---a-~-~~i~~~~~~~~~~~~~~~~  215 (328)
T 1xa0_A          146 LTPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVL----G---A-K-EVLAREDVMAERIRPLDKQ  215 (328)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHT----T---C-S-EEEECC---------CCSC
T ss_pred             CCCCCceEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHc----C---C-c-EEEecCCcHHHHHHHhcCC
Confidence            34454 8999997 3 478888887764 34899999988777777652    1   1 1 11111 11 00 1 11234


Q ss_pred             CcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      .+|+|+-...     .  ..+....+.|++||++++...
T Consensus       216 ~~d~vid~~g-----~--~~~~~~~~~l~~~G~~v~~G~  247 (328)
T 1xa0_A          216 RWAAAVDPVG-----G--RTLATVLSRMRYGGAVAVSGL  247 (328)
T ss_dssp             CEEEEEECST-----T--TTHHHHHHTEEEEEEEEECSC
T ss_pred             cccEEEECCc-----H--HHHHHHHHhhccCCEEEEEee
Confidence            6898875432     2  247788899999999987643

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=87.79  E-value=0.37  Score=43.88  Aligned_cols=102  Identities=16%  Similarity=0.182  Sum_probs=54.4

Q ss_pred             cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (333)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (333)
                      .++.+|+=+|+|. |.......... +.+|+++|.++..++.+.+..   +    ..+.....+...+.-.-..+|+|+.
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~~~-Ga~V~~~d~~~~~~~~~~~~~---g----~~~~~~~~~~~~l~~~~~~~DvVi~  235 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIALGM-GAQVTILDVNHKRLQYLDDVF---G----GRVITLTATEANIKKSVQHADLLIG  235 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHT---T----TSEEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHhc---C----ceEEEecCCHHHHHHHHhCCCEEEE
Confidence            3467999999864 54444444332 339999999998777665432   1    1222211111111100125798876


Q ss_pred             ccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          244 GAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       244 ~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      .........+.-+.+++.+.+|+||+++...
T Consensus       236 ~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          236 AVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             CCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred             CCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence            5433221111112466778889999887654

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=87.35  E-value=1.6  Score=34.30  Aligned_cols=32  Identities=9%  Similarity=0.166  Sum_probs=29.7

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeC
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDF  198 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~  198 (333)
                      .+-|||+|-|+|..-..+.+..|+.+++++|.
T Consensus        41 ~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR   72 (174)
T 3iht_A           41 SGPVYELGLGNGRTYHHLRQHVQGREIYVFER   72 (174)
T ss_dssp             CSCEEEECCTTCHHHHHHHHHCCSSCEEEEES
T ss_pred             CCceEEecCCCChhHHHHHHhCCCCcEEEEEe
Confidence            45899999999999999999999999999995

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=87.23  E-value=9.6  Score=31.41  Aligned_cols=75  Identities=20%  Similarity=0.151  Sum_probs=47.4

Q ss_pred             CCCeEEEEcCCcCHH----HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCe-EEEEccCC-CCCCCCCCcc
Q 019957          166 QGGLLVDVSCGSGLF----SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL-ALVRADVC-RLPFASGFVD  239 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~----~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i-~~~~~d~~-~lp~~~~~fD  239 (333)
                      .+.+||=.|+ +|..    +..|.+.+.  +|++++.++..++....          .++ .++.+|+. .+.-.-+..|
T Consensus        20 ~~~~ilVtGa-tG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~----------~~~~~~~~~Dl~~~~~~~~~~~D   86 (236)
T 3e8x_A           20 QGMRVLVVGA-NGKVARYLLSELKNKGH--EPVAMVRNEEQGPELRE----------RGASDIVVANLEEDFSHAFASID   86 (236)
T ss_dssp             -CCEEEEETT-TSHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHH----------TTCSEEEECCTTSCCGGGGTTCS
T ss_pred             CCCeEEEECC-CChHHHHHHHHHHhCCC--eEEEEECChHHHHHHHh----------CCCceEEEcccHHHHHHHHcCCC
Confidence            4678998885 3433    445555554  99999998876544332          257 88999986 2221224789


Q ss_pred             eEEeccccccCCCh
Q 019957          240 AVHAGAALHCWPSP  253 (333)
Q Consensus       240 ~V~~~~vl~h~~d~  253 (333)
                      +|+.........++
T Consensus        87 ~vi~~ag~~~~~~~  100 (236)
T 3e8x_A           87 AVVFAAGSGPHTGA  100 (236)
T ss_dssp             EEEECCCCCTTSCH
T ss_pred             EEEECCCCCCCCCc
Confidence            99987765544444

>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A

Probab=87.22  E-value=0.41  Score=38.73  Aligned_cols=41  Identities=20%  Similarity=0.352  Sum_probs=24.3

Q ss_pred             cCeecccCCCccccccC-CCCccccccccCceeeCCCCcccc
Q 019957           58 GDLFSCPICYEPLIRKG-PTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        58 ~~~l~CP~C~~~l~~~~-~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      ...+.||.|++.-.... ....+..+-..-.+.|.+||+.|.
T Consensus       135 t~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~  176 (178)
T 3po3_S          135 TDRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK  176 (178)
T ss_dssp             BSSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred             cCCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence            46789999998432111 111112223345789999999873

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=86.58  E-value=0.2  Score=45.71  Aligned_cols=97  Identities=19%  Similarity=0.134  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC----------------
Q 019957          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV----------------  228 (333)
Q Consensus       166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~----------------  228 (333)
                      ++.+|+=+|+|. |.....++... +.+|+++|.++..++.+.+.          +..++..+.                
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~l----------Ga~~~~l~~~~~~~~gya~~~~~~~  251 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRL-GAKTTGYDVRPEVAEQVRSV----------GAQWLDLGIDAAGEGGYARELSEAE  251 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHH-TCEEEEECSSGGGHHHHHHT----------TCEECCCC-------------CHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEeccccccccccchhhhhHHH
Confidence            577999999986 66555444432 33899999999877777652          122221110                


Q ss_pred             -----CCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEE
Q 019957          229 -----CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT  273 (333)
Q Consensus       229 -----~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~  273 (333)
                           ..+.-.-...|+|+....+..-..|.-+-+++.+.+|||++++-.
T Consensus       252 ~~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDv  301 (381)
T 3p2y_A          252 RAQQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDL  301 (381)
T ss_dssp             HHHHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEET
T ss_pred             HhhhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEE
Confidence                 001001247899987532322122322346888889998877654

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=85.91  E-value=4.5  Score=35.25  Aligned_cols=78  Identities=26%  Similarity=0.258  Sum_probs=55.9

Q ss_pred             cCCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CC--
Q 019957          165 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--  234 (333)
Q Consensus       165 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--  234 (333)
                      ..+.+||=.|++.|   .++..|++.|.  +|++++.++..++...+.+...    ..++.++.+|+.+..     +.  
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~~  102 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQ----GFDAHGVVCDVRHLDEMVRLADEA  102 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCceEEEEccCCCHHHHHHHHHHH
Confidence            34678998988765   35566666665  8999999998888877766654    347889999997742     00  


Q ss_pred             ---CCCcceEEeccccc
Q 019957          235 ---SGFVDAVHAGAALH  248 (333)
Q Consensus       235 ---~~~fD~V~~~~vl~  248 (333)
                         .+..|+++.+..+.
T Consensus       103 ~~~~g~id~lvnnAg~~  119 (301)
T 3tjr_A          103 FRLLGGVDVVFSNAGIV  119 (301)
T ss_dssp             HHHHSSCSEEEECCCCC
T ss_pred             HHhCCCCCEEEECCCcC
Confidence               13789999876543

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=85.90  E-value=7.1  Score=33.72  Aligned_cols=104  Identities=16%  Similarity=0.221  Sum_probs=64.8

Q ss_pred             CCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHH-HHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CC--
Q 019957          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSEN-MLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--  234 (333)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~-~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--  234 (333)
                      .++++|=.|++.|   .++..|++.|.  +|+.++.+.. ..+...+..+..    ..++.++.+|+.+..     +.  
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~  119 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKE----GVKCVLLPGDLSDEQHCKDIVQET  119 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTT----TCCEEEEESCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHH
Confidence            4668898887665   34556666665  8999998765 344444444433    457889999997642     10  


Q ss_pred             ---CCCcceEEeccccccCC------Ch--------------HHHHHHHHHhccCCcEEEEEEe
Q 019957          235 ---SGFVDAVHAGAALHCWP------SP--------------SNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       235 ---~~~fD~V~~~~vl~h~~------d~--------------~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                         -+..|+++.+....+..      +.              ..+++.+.+.++.+|.++....
T Consensus       120 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS  183 (291)
T 3ijr_A          120 VRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS  183 (291)
T ss_dssp             HHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             HHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence               13689998765443211      11              1345666777788888777653

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=85.83  E-value=0.42  Score=44.00  Aligned_cols=98  Identities=17%  Similarity=0.164  Sum_probs=58.5

Q ss_pred             CCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC-------------CC
Q 019957          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC-------------RL  231 (333)
Q Consensus       166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~-------------~l  231 (333)
                      ++.+|+=+|+|. |.....++... +.+|+++|.++..++.+++.          +..++..+..             .+
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~v~D~~~~~l~~~~~~----------G~~~~~~~~~~~~d~~~~~~ya~e~  257 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRL-GAVVSATDVRPAAKEQVASL----------GAKFIAVEDEEFKAAETAGGYAKEM  257 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSTTHHHHHHHT----------TCEECCCCC----------------
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHc----------CCceeecccccccccccccchhhhc
Confidence            578999999996 66665555543 34999999999887777652          1222211110             00


Q ss_pred             C----------C--CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          232 P----------F--ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       232 p----------~--~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      +          +  .-...|+|+....+.--..|.-+-+++.+.+|||.+++-..
T Consensus       258 s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA  312 (405)
T 4dio_A          258 SGEYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA  312 (405)
T ss_dssp             -CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             chhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence            0          0  01357999865433322233333468888899988877643

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=85.73  E-value=3.2  Score=37.43  Aligned_cols=93  Identities=8%  Similarity=0.005  Sum_probs=58.5

Q ss_pred             cCCCeEEEEcC-C-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CCCCC
Q 019957          165 AQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FASGF  237 (333)
Q Consensus       165 ~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~~  237 (333)
                      .++.+||=+|+ | .|.++..+++.. +.+|+++. ++..++.+++.    |     --.++...-.++.     ..++.
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~-Ga~Vi~~~-~~~~~~~~~~l----G-----a~~vi~~~~~~~~~~v~~~t~g~  231 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLS-GYIPIATC-SPHNFDLAKSR----G-----AEEVFDYRAPNLAQTIRTYTKNN  231 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHHT----T-----CSEEEETTSTTHHHHHHHHTTTC
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHC-CCEEEEEe-CHHHHHHHHHc----C-----CcEEEECCCchHHHHHHHHccCC
Confidence            56789999998 3 588888888774 44888885 77777766652    1     1123322111110     11345


Q ss_pred             cceEEeccccccCCChHHHHHHHHHhc-cCCcEEEEEE
Q 019957          238 VDAVHAGAALHCWPSPSNAVAEISRIL-RSGGVFVGTT  274 (333)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~~~r~L-kpgG~l~i~~  274 (333)
                      +|+|+-.-.     . ...+..+.+.| ++||+++...
T Consensus       232 ~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          232 LRYALDCIT-----N-VESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             CCEEEESSC-----S-HHHHHHHHHHSCTTCEEEEESS
T ss_pred             ccEEEECCC-----c-hHHHHHHHHHhhcCCCEEEEEe
Confidence            898875322     2 24577788888 6999988754

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=85.37  E-value=5.7  Score=34.00  Aligned_cols=104  Identities=20%  Similarity=0.195  Sum_probs=67.1

Q ss_pred             CCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCC------------HHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFS------------ENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s------------~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      .++++|=.|++.|   .++..|++.|.  +|+.+|.+            ...++.....+...    ..++.++.+|+.+
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~   82 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKT----GRKAYTAEVDVRD   82 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT----TSCEEEEECCTTC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhc----CCceEEEEccCCC
Confidence            4668898887665   34556666665  89999987            66666655555443    4578899999976


Q ss_pred             CC-----CC-----CCCcceEEeccccccCC---Ch--------------HHHHHHHHHhccCCcEEEEEEe
Q 019957          231 LP-----FA-----SGFVDAVHAGAALHCWP---SP--------------SNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       231 lp-----~~-----~~~fD~V~~~~vl~h~~---d~--------------~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ..     +.     -+..|+++.+..+....   +.              ..+++.+...++.+|.++....
T Consensus        83 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  154 (287)
T 3pxx_A           83 RAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS  154 (287)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence            42     10     13789999876653321   11              1245666677778888777653

>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=85.17  E-value=0.43  Score=29.90  Aligned_cols=26  Identities=27%  Similarity=0.484  Sum_probs=19.9

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      ....||.|+..+.             .+.+.|..||+..
T Consensus        13 ~k~iCpkC~a~~~-------------~gaw~CrKCG~~~   38 (51)
T 3j21_g           13 KKYVCLRCGATNP-------------WGAKKCRKCGYKR   38 (51)
T ss_dssp             SEEECTTTCCEEC-------------TTCSSCSSSSSCC
T ss_pred             CCccCCCCCCcCC-------------CCceecCCCCCcc
Confidence            4567999999732             2689999998763

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=85.11  E-value=5.8  Score=31.46  Aligned_cols=91  Identities=13%  Similarity=0.166  Sum_probs=55.6

Q ss_pred             CCeEEEEcCCc-CH-HHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC----C-CCCCc
Q 019957          167 GGLLVDVSCGS-GL-FSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----F-ASGFV  238 (333)
Q Consensus       167 ~~~vLDiGcG~-G~-~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~-~~~~f  238 (333)
                      +.+|+=+|+|. |. ++..|.+. +.  +|+++|.++..++.+++          .++.++.+|..+..    . .-..+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~--~V~vid~~~~~~~~~~~----------~g~~~~~gd~~~~~~l~~~~~~~~a  106 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK--ISLGIEIREEAAQQHRS----------EGRNVISGDATDPDFWERILDTGHV  106 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS--CEEEEESCHHHHHHHHH----------TTCCEEECCTTCHHHHHTBCSCCCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC--eEEEEECCHHHHHHHHH----------CCCCEEEcCCCCHHHHHhccCCCCC
Confidence            55899999875 53 44555666 65  89999999987766553          13456677765421    1 13468


Q ss_pred             ceEEeccccccCCChH--HHHHHHHHhccCCcEEEEEE
Q 019957          239 DAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       239 D~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~  274 (333)
                      |+|+...     ++..  ..+-...+.+.|++.++...
T Consensus       107 d~vi~~~-----~~~~~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          107 KLVLLAM-----PHHQGNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             CEEEECC-----SSHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             CEEEEeC-----CChHHHHHHHHHHHHHCCCCEEEEEE
Confidence            8888642     2222  22333455566777777654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=84.93  E-value=5.6  Score=29.97  Aligned_cols=90  Identities=17%  Similarity=0.135  Sum_probs=54.1

Q ss_pred             CCeEEEEcCCc-CH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC----CCCCCcce
Q 019957          167 GGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDA  240 (333)
Q Consensus       167 ~~~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~  240 (333)
                      ..+|+=+|+|. |. ++..|.+.+.  +|+++|.++..++.+++          .++.++.+|..+..    ..-..+|+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~--~V~~id~~~~~~~~~~~----------~~~~~~~gd~~~~~~l~~~~~~~~d~   73 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK--KVLAVDKSKEKIELLED----------EGFDAVIADPTDESFYRSLDLEGVSA   73 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHH----------TTCEEEECCTTCHHHHHHSCCTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHH----------CCCcEEECCCCCHHHHHhCCcccCCE
Confidence            34789999875 43 3445555554  89999999988776654          24677888886532    11246888


Q ss_pred             EEeccccccCCChH--HHHHHHHHhccCCcEEEEEE
Q 019957          241 VHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       241 V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~  274 (333)
                      |+....     +..  ..+....+.+. ...++...
T Consensus        74 vi~~~~-----~~~~n~~~~~~a~~~~-~~~iia~~  103 (141)
T 3llv_A           74 VLITGS-----DDEFNLKILKALRSVS-DVYAIVRV  103 (141)
T ss_dssp             EEECCS-----CHHHHHHHHHHHHHHC-CCCEEEEE
T ss_pred             EEEecC-----CHHHHHHHHHHHHHhC-CceEEEEE
Confidence            876432     222  22334444455 45555544

>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=84.78  E-value=0.94  Score=33.66  Aligned_cols=41  Identities=12%  Similarity=0.226  Sum_probs=23.6

Q ss_pred             cCeecccCCCccccc-cCCCCccccccccCceeeCCCCcccc
Q 019957           58 GDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        58 ~~~l~CP~C~~~l~~-~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      .....||.|++.-.. ......+..+-..-.+.|.+||+.+.
T Consensus        70 ~~~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~  111 (113)
T 3h0g_I           70 RSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFE  111 (113)
T ss_dssp             BCCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCC
T ss_pred             CcccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEe
Confidence            344889999984211 11111122223345789999999874

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=84.64  E-value=7.7  Score=32.83  Aligned_cols=105  Identities=15%  Similarity=0.230  Sum_probs=62.7

Q ss_pred             CCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CC----
Q 019957          167 GGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA----  234 (333)
Q Consensus       167 ~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----  234 (333)
                      +.++|=.|++.|   .++..|.+.|.  +|++++.++...+...+.+.....  ..++.++.+|+.+..     +.    
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~   82 (267)
T 2gdz_A            7 GKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFE--PQKTLFIQCDVADQQQLRDTFRKVVD   82 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSC--GGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhcC--CCceEEEecCCCCHHHHHHHHHHHHH
Confidence            557888886554   34555666665  899999998766655544433110  235788899987642     10    


Q ss_pred             -CCCcceEEeccccccCCChHH-----------HHHHHHHhccC-----CcEEEEEEe
Q 019957          235 -SGFVDAVHAGAALHCWPSPSN-----------AVAEISRILRS-----GGVFVGTTF  275 (333)
Q Consensus       235 -~~~fD~V~~~~vl~h~~d~~~-----------~l~~~~r~Lkp-----gG~l~i~~~  275 (333)
                       -+..|+++.+..+....+...           ..+.+.+.++.     +|.++....
T Consensus        83 ~~g~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS  140 (267)
T 2gdz_A           83 HFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS  140 (267)
T ss_dssp             HHSCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             HcCCCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCC
Confidence             135799998776544444432           23444455543     577766553

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=84.40  E-value=6.1  Score=35.29  Aligned_cols=96  Identities=9%  Similarity=0.009  Sum_probs=52.7

Q ss_pred             hcccCCCeEEEEcC-C-cCHHHHHHHHhCCCCeEE-EEeCCHH---HHHHHHHHHHhcCcCCCCCeEEEEc------cCC
Q 019957          162 FKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVV-ALDFSEN---MLRQCYDFIKQDNTILTSNLALVRA------DVC  229 (333)
Q Consensus       162 l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~-g~D~s~~---~~~~a~~~~~~~~~~~~~~i~~~~~------d~~  229 (333)
                      ....++.+||-+|+ | .|.++..+++.. +.+++ .++.++.   ..+.+++    .|     --.++..      ++.
T Consensus       163 ~~~~~g~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~~~~----lG-----a~~vi~~~~~~~~~~~  232 (357)
T 1zsy_A          163 EQLQPGDSVIQNASNSGVGQAVIQIAAAL-GLRTINVVRDRPDIQKLSDRLKS----LG-----AEHVITEEELRRPEMK  232 (357)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEECCCSCHHHHHHHHHH----TT-----CSEEEEHHHHHSGGGG
T ss_pred             hccCCCCEEEEeCCcCHHHHHHHHHHHHc-CCEEEEEecCccchHHHHHHHHh----cC-----CcEEEecCcchHHHHH
Confidence            34567889999997 4 488888888764 23554 4444432   2344433    22     1122221      111


Q ss_pred             CCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      ++--..+.+|+|+-.-     ..+  .+.+..+.|++||++++..
T Consensus       233 ~~~~~~~~~Dvvid~~-----g~~--~~~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          233 NFFKDMPQPRLALNCV-----GGK--SSTELLRQLARGGTMVTYG  270 (357)
T ss_dssp             GTTSSSCCCSEEEESS-----CHH--HHHHHHTTSCTTCEEEECC
T ss_pred             HHHhCCCCceEEEECC-----CcH--HHHHHHHhhCCCCEEEEEe
Confidence            1110111489887532     222  2346789999999998763

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=84.40  E-value=0.76  Score=30.15  Aligned_cols=32  Identities=16%  Similarity=0.390  Sum_probs=24.1

Q ss_pred             cCeecccCCCccccccCCCCccccccccCceeeCCCCccccC
Q 019957           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (333)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~   99 (333)
                      ...+.|..|+........          ..++|+.||+.-..
T Consensus        19 ~v~Y~C~~Cg~~~~l~~~----------~~iRC~~CG~RILy   50 (63)
T 3h0g_L           19 TMIYLCADCGARNTIQAK----------EVIRCRECGHRVMY   50 (63)
T ss_dssp             CCCCBCSSSCCBCCCCSS----------SCCCCSSSCCCCCB
T ss_pred             CeEEECCCCCCeeecCCC----------CceECCCCCcEEEE
Confidence            567999999997754422          47999999987543

>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=84.33  E-value=0.81  Score=34.00  Aligned_cols=38  Identities=18%  Similarity=0.292  Sum_probs=26.1

Q ss_pred             eecccCCCccccccCCCCccccccccCceeeCCCCccccCcCC
Q 019957           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDN  102 (333)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g  102 (333)
                      +.=||.|++-|......+.     ....+.|.+|+..+...+.
T Consensus         4 m~FCp~Cgn~L~~~~~~~~-----~~~~~~C~~C~y~~~~~~~   41 (113)
T 3h0g_I            4 FQYCIECNNMLYPREDKVD-----RVLRLACRNCDYSEIAATS   41 (113)
T ss_dssp             CCCCSSSCCCCEECCCTTT-----CCCCEECSSSCCEECCSCS
T ss_pred             ceeCcCCCCEeeEcccCCC-----CeeEEECCCCCCeEEcCCC
Confidence            3459999998866543211     1237999999998876654

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=83.92  E-value=9.7  Score=32.32  Aligned_cols=105  Identities=22%  Similarity=0.252  Sum_probs=66.6

Q ss_pred             CCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeC-CHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CC--
Q 019957          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDF-SENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--  234 (333)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~-s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--  234 (333)
                      .++++|=.|++.|   .++..|++.|.  +|+.++. +...++...+.+...    ..++.++.+|+.+..     +.  
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~   90 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIKAL----GSDAIAIKADIRQVPEIVKLFDQA   90 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHH
Confidence            4668888887654   24556666665  8888775 455555555555543    357889999997742     10  


Q ss_pred             ---CCCcceEEeccccccCCC-----h--------------HHHHHHHHHhccCCcEEEEEEec
Q 019957          235 ---SGFVDAVHAGAALHCWPS-----P--------------SNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       235 ---~~~fD~V~~~~vl~h~~d-----~--------------~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                         -+..|+++.+..+.+...     +              ..+++.+.+.++++|.++.....
T Consensus        91 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~  154 (270)
T 3is3_A           91 VAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSN  154 (270)
T ss_dssp             HHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCT
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence               136899987665543221     1              13456677788888988876653

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=83.79  E-value=10  Score=28.12  Aligned_cols=90  Identities=9%  Similarity=0.162  Sum_probs=51.6

Q ss_pred             CeEEEEcCCc-CH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC----CCCCCcceE
Q 019957          168 GLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDAV  241 (333)
Q Consensus       168 ~~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~V  241 (333)
                      .+|+=+|+|. |. ++..|.+.+.  +|+++|.++..++...+.         .++.++.+|..+..    ..-..+|+|
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~--~v~~~d~~~~~~~~~~~~---------~~~~~~~~d~~~~~~l~~~~~~~~d~v   73 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGH--DIVLIDIDKDICKKASAE---------IDALVINGDCTKIKTLEDAGIEDADMY   73 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH---------CSSEEEESCTTSHHHHHHTTTTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHh---------cCcEEEEcCCCCHHHHHHcCcccCCEE
Confidence            4788888865 43 3344555554  899999998876655431         13556677764321    112468988


Q ss_pred             EeccccccCCChHHHHHHHHHhccCCcEEEE
Q 019957          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVG  272 (333)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i  272 (333)
                      +...--.   .....+..+.+.++++ .+++
T Consensus        74 i~~~~~~---~~~~~~~~~~~~~~~~-~ii~  100 (140)
T 1lss_A           74 IAVTGKE---EVNLMSSLLAKSYGIN-KTIA  100 (140)
T ss_dssp             EECCSCH---HHHHHHHHHHHHTTCC-CEEE
T ss_pred             EEeeCCc---hHHHHHHHHHHHcCCC-EEEE
Confidence            8753211   1123445556667775 4444

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=83.65  E-value=5.9  Score=33.57  Aligned_cols=106  Identities=21%  Similarity=0.245  Sum_probs=69.9

Q ss_pred             CCCeEEEEcC----CcCH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----C--
Q 019957          166 QGGLLVDVSC----GSGL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F--  233 (333)
Q Consensus       166 ~~~~vLDiGc----G~G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~--  233 (333)
                      .++++|=-|+    |.|. .+..|++.|.  +|+..|.++..++.+.+.+++.+   ..++.++.+|+.+..     +  
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~   79 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA--KLVFTYRKERSRKELEKLLEQLN---QPEAHLYQIDVQSDEEVINGFEQ   79 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHGGGT---CSSCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CCcEEEEEccCCCHHHHHHHHHH
Confidence            4778898885    3443 5667777776  99999999888888877776654   457888999987632     0  


Q ss_pred             ---CCCCcceEEeccccccCC---------ChH--------------HHHHHHHHhccCCcEEEEEEec
Q 019957          234 ---ASGFVDAVHAGAALHCWP---------SPS--------------NAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       234 ---~~~~fD~V~~~~vl~h~~---------d~~--------------~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                         .-+..|+++.+..+....         +..              ...+.....++.+|.++.....
T Consensus        80 ~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~  148 (256)
T 4fs3_A           80 IGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYL  148 (256)
T ss_dssp             HHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECG
T ss_pred             HHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecc
Confidence               125789888765432210         111              1223445667789998877643

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=83.54  E-value=17  Score=30.89  Aligned_cols=79  Identities=19%  Similarity=0.190  Sum_probs=51.0

Q ss_pred             CCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CC---
Q 019957          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---  234 (333)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---  234 (333)
                      .+.++|=.|++.|   .++..|++.+.  +|++++.++..++...+.+...+.  ..++.++.+|+.+..     +.   
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~  106 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGY--PGTLIPYRCDLSNEEDILSMFSAIR  106 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--SSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHHHhcCC--CceEEEEEecCCCHHHHHHHHHHHH
Confidence            3568888886543   24445555554  899999998777666665555431  245788889987642     10   


Q ss_pred             --CCCcceEEeccccc
Q 019957          235 --SGFVDAVHAGAALH  248 (333)
Q Consensus       235 --~~~fD~V~~~~vl~  248 (333)
                        -+.+|+|+.+..+.
T Consensus       107 ~~~g~iD~vi~~Ag~~  122 (279)
T 1xg5_A          107 SQHSGVDICINNAGLA  122 (279)
T ss_dssp             HHHCCCSEEEECCCCC
T ss_pred             HhCCCCCEEEECCCCC
Confidence              13689998766543

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=83.53  E-value=2.8  Score=39.56  Aligned_cols=90  Identities=12%  Similarity=0.005  Sum_probs=55.6

Q ss_pred             ccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEE
Q 019957          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (333)
Q Consensus       164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (333)
                      ..++.+|+=+|+|. |......++.. +.+|+++|.++..++.+.+.          +..+  .++.+.   -...|+|+
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~-Ga~Viv~d~~~~~~~~A~~~----------Ga~~--~~l~e~---l~~aDvVi  334 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQ-GARVSVTEIDPINALQAMME----------GFDV--VTVEEA---IGDADIVV  334 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT----------TCEE--CCHHHH---GGGCSEEE
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCEE--ecHHHH---HhCCCEEE
Confidence            34688999999986 65555554443 34999999999877666541          2222  222221   13679988


Q ss_pred             eccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      ..-.-.++-+     .+..+.||+||+++...
T Consensus       335 ~atgt~~~i~-----~~~l~~mk~ggilvnvG  361 (494)
T 3ce6_A          335 TATGNKDIIM-----LEHIKAMKDHAILGNIG  361 (494)
T ss_dssp             ECSSSSCSBC-----HHHHHHSCTTCEEEECS
T ss_pred             ECCCCHHHHH-----HHHHHhcCCCcEEEEeC
Confidence            7533223211     25667789999887654

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=83.42  E-value=6.7  Score=33.13  Aligned_cols=105  Identities=9%  Similarity=0.094  Sum_probs=65.0

Q ss_pred             cCCCeEEEEcCC--cC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----C-
Q 019957          165 AQGGLLVDVSCG--SG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F-  233 (333)
Q Consensus       165 ~~~~~vLDiGcG--~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~-  233 (333)
                      ..+++||=.|++  .|   .++..|++.+.  +|+.++.+....+..++....     ...+.++.+|+.+..     + 
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~   84 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGA--ELAFTYVGDRFKDRITEFAAE-----FGSELVFPCDVADDAQIDALFA   84 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHH-----TTCCCEEECCTTCHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCC--CEEEEecchhhHHHHHHHHHH-----cCCcEEEECCCCCHHHHHHHHH
Confidence            457789999965  33   24556666665  899999886555544444343     335788899997642     1 


Q ss_pred             ----CCCCcceEEeccccccC----------CCh--------------HHHHHHHHHhccCCcEEEEEEec
Q 019957          234 ----ASGFVDAVHAGAALHCW----------PSP--------------SNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       234 ----~~~~fD~V~~~~vl~h~----------~d~--------------~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                          .-+..|+++.+..+.+.          .++              ..+++.+...++++|.++.....
T Consensus        85 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~  155 (271)
T 3ek2_A           85 SLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYL  155 (271)
T ss_dssp             HHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECG
T ss_pred             HHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEecc
Confidence                01478999987654331          111              12455566677778887776543

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=83.31  E-value=0.52  Score=43.42  Aligned_cols=43  Identities=21%  Similarity=0.110  Sum_probs=31.7

Q ss_pred             cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 019957          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYD  208 (333)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~  208 (333)
                      .++.+|+=+|+|. |.....+++.. +.+|+++|.++..++.+++
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~v~D~~~~~~~~~~~  213 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS  213 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCGGGHHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH
Confidence            3578999999986 66666555553 3489999999887776643

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=83.16  E-value=1.9  Score=38.46  Aligned_cols=90  Identities=6%  Similarity=-0.043  Sum_probs=54.2

Q ss_pred             CeEEEE-cCC-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--C----CCCCcc
Q 019957          168 GLLVDV-SCG-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--F----ASGFVD  239 (333)
Q Consensus       168 ~~vLDi-GcG-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~----~~~~fD  239 (333)
                      .+||=. |+| .|..+..+++.. +.+|+++|.++..++.+++.    |    .. .++..+-.++.  .    ....+|
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~~----G----a~-~~~~~~~~~~~~~v~~~~~~~g~D  235 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEE-GFRPIVTVRRDEQIALLKDI----G----AA-HVLNEKAPDFEATLREVMKAEQPR  235 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESCGGGHHHHHHH----T----CS-EEEETTSTTHHHHHHHHHHHHCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----C----CC-EEEECCcHHHHHHHHHHhcCCCCc
Confidence            466644 444 366666666653 34999999999888877752    1    11 22222111111  0    013699


Q ss_pred             eEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       240 ~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      +|+-...       ...+..+.+.|+++|++++..
T Consensus       236 ~vid~~g-------~~~~~~~~~~l~~~G~iv~~G  263 (349)
T 3pi7_A          236 IFLDAVT-------GPLASAIFNAMPKRARWIIYG  263 (349)
T ss_dssp             EEEESSC-------HHHHHHHHHHSCTTCEEEECC
T ss_pred             EEEECCC-------ChhHHHHHhhhcCCCEEEEEe
Confidence            9886443       123577889999999998865

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=83.09  E-value=7.8  Score=32.89  Aligned_cols=79  Identities=16%  Similarity=0.164  Sum_probs=53.9

Q ss_pred             CCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC-----C---
Q 019957          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A---  234 (333)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-----~---  234 (333)
                      .++++|=.|++.|   .++..|++.+.  +|+.++.++..++...+.+....   ..++.++.+|+.+...     .   
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~   93 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA--RLVLSGRDVSELDAARRALGEQF---GTDVHTVAIDLAEPDAPAELARRAA   93 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH---CCCEEEEECCTTSTTHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc---CCcEEEEEecCCCHHHHHHHHHHHH
Confidence            4567888887654   34556666665  89999999888777766554421   4578999999987541     0   


Q ss_pred             --CCCcceEEecccccc
Q 019957          235 --SGFVDAVHAGAALHC  249 (333)
Q Consensus       235 --~~~fD~V~~~~vl~h  249 (333)
                        -+..|+++.+..+.+
T Consensus        94 ~~~g~id~lv~nAg~~~  110 (266)
T 4egf_A           94 EAFGGLDVLVNNAGISH  110 (266)
T ss_dssp             HHHTSCSEEEEECCCCC
T ss_pred             HHcCCCCEEEECCCcCC
Confidence              137899998765543

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=82.83  E-value=5.6  Score=33.53  Aligned_cols=102  Identities=10%  Similarity=0.046  Sum_probs=61.5

Q ss_pred             CCeEEEEcCCcCHHHH----HHHH-hCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CC--
Q 019957          167 GGLLVDVSCGSGLFSR----KFAK-SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--  234 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~----~l~~-~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--  234 (333)
                      +.+||=.|+ +|.++.    .|.+ .+.  +|++++.++..++...+.+...    ..++.++.+|+.+..     +.  
T Consensus         4 ~k~vlITGa-sggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~~~~~~~~~   76 (276)
T 1wma_A            4 IHVALVTGG-NKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAE----GLSPRFHQLDIDDLQSIRALRDFL   76 (276)
T ss_dssp             CCEEEESSC-SSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHT----TCCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEeCC-CcHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhc----CCeeEEEECCCCCHHHHHHHHHHH
Confidence            457787774 444444    4445 444  8999999987766666555543    346888999987642     00  


Q ss_pred             ---CCCcceEEeccccccCC----C-h--------------HHHHHHHHHhccCCcEEEEEEe
Q 019957          235 ---SGFVDAVHAGAALHCWP----S-P--------------SNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       235 ---~~~fD~V~~~~vl~h~~----d-~--------------~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                         -+.+|+|+.+.......    . .              ..+++.+.+.++++|.++....
T Consensus        77 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS  139 (276)
T 1wma_A           77 RKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  139 (276)
T ss_dssp             HHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             HHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence               13689998765433211    1 1              1244556666666777776653

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=82.71  E-value=12  Score=31.15  Aligned_cols=75  Identities=16%  Similarity=0.218  Sum_probs=50.1

Q ss_pred             cCCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----C-CC
Q 019957          165 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F-AS  235 (333)
Q Consensus       165 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~-~~  235 (333)
                      .++++||=.|++.|   .++..|++.+.  +|+.++.++..++...+.+       ..++.+..+|+.+..     + ..
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~   82 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNAL-------KDNYTIEVCNLANKEECSNLISKT   82 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------CSSEEEEECCTTSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHh-------ccCccEEEcCCCCHHHHHHHHHhc
Confidence            45678998887654   34555666665  8999999988777665543       346888888987632     1 12


Q ss_pred             CCcceEEeccccc
Q 019957          236 GFVDAVHAGAALH  248 (333)
Q Consensus       236 ~~fD~V~~~~vl~  248 (333)
                      +..|+++.+..+.
T Consensus        83 ~~id~li~~Ag~~   95 (249)
T 3f9i_A           83 SNLDILVCNAGIT   95 (249)
T ss_dssp             SCCSEEEECCC--
T ss_pred             CCCCEEEECCCCC
Confidence            4689999876543

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=82.67  E-value=0.69  Score=42.29  Aligned_cols=43  Identities=21%  Similarity=0.087  Sum_probs=31.5

Q ss_pred             cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Q 019957          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYD  208 (333)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~  208 (333)
                      .++.+|+=+|+|. |.....+++.. +.+|+++|.++..++.+++
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~-Ga~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          170 VPPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVES  213 (384)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence            3678999999986 66666555554 3489999999876666654

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=82.67  E-value=8.2  Score=33.39  Aligned_cols=105  Identities=17%  Similarity=0.163  Sum_probs=65.6

Q ss_pred             CCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCC--HHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CC-
Q 019957          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFS--ENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-  234 (333)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s--~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-  234 (333)
                      .++++|=.|++.|   .++..|++.|.  +|+.++.+  ....+...+.+...    ..++.++.+|+.+..     +. 
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~  121 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEEC----GRKAVLLPGDLSDESFARSLVHK  121 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHT----TCCEEECCCCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHc----CCcEEEEEecCCCHHHHHHHHHH
Confidence            3668898887654   34556666665  89999886  33444444444443    357888889987642     00 


Q ss_pred             ----CCCcceEEeccccccC-C-----Ch--------------HHHHHHHHHhccCCcEEEEEEec
Q 019957          235 ----SGFVDAVHAGAALHCW-P-----SP--------------SNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       235 ----~~~fD~V~~~~vl~h~-~-----d~--------------~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                          -+..|+++.+..+... .     ++              ..+++.+...++++|.++.....
T Consensus       122 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~  187 (294)
T 3r3s_A          122 AREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSI  187 (294)
T ss_dssp             HHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCG
T ss_pred             HHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCh
Confidence                1478999987665331 1     11              13456666778888888776543

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=82.64  E-value=11  Score=30.61  Aligned_cols=135  Identities=8%  Similarity=0.039  Sum_probs=69.9

Q ss_pred             eEEEEcCCc--CH-HHHHHH-HhCCCCeEEEEeCCHH-HHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-C--CCCCcce
Q 019957          169 LLVDVSCGS--GL-FSRKFA-KSGTYSGVVALDFSEN-MLRQCYDFIKQDNTILTSNLALVRADVCRLP-F--ASGFVDA  240 (333)
Q Consensus       169 ~vLDiGcG~--G~-~~~~l~-~~~~~~~v~g~D~s~~-~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~--~~~~fD~  240 (333)
                      +||=.|++.  |. +...|. +.+.  +|++++.++. .++....   .     ..++.++.+|+.+.. .  .-..+|+
T Consensus         7 ~vlVtGasg~iG~~~~~~l~~~~g~--~V~~~~r~~~~~~~~~~~---~-----~~~~~~~~~D~~d~~~~~~~~~~~d~   76 (221)
T 3r6d_A            7 YITILGAAGQIAQXLTATLLTYTDM--HITLYGRQLKTRIPPEII---D-----HERVTVIEGSFQNPGXLEQAVTNAEV   76 (221)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCCC--EEEEEESSHHHHSCHHHH---T-----STTEEEEECCTTCHHHHHHHHTTCSE
T ss_pred             EEEEEeCCcHHHHHHHHHHHhcCCc--eEEEEecCccccchhhcc---C-----CCceEEEECCCCCHHHHHHHHcCCCE
Confidence            588888432  32 344455 4454  9999999876 4433321   1     557899999997632 0  0136799


Q ss_pred             EEeccccccCCChHHHHHHHHHhccC-C-cEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEE
Q 019957          241 VHAGAALHCWPSPSNAVAEISRILRS-G-GVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT  318 (333)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~Lkp-g-G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~  318 (333)
                      |+.......+   .  .+.+.+.++. | |.++...........+.....+........+.-+...++.++++.|+....
T Consensus        77 vv~~ag~~n~---~--~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~~~~~~~~~~~~~y~~~K~~~e~~~~~~~i~~~~  151 (221)
T 3r6d_A           77 VFVGAMESGS---D--MASIVKALSRXNIRRVIGVSMAGLSGEFPVALEKWTFDNLPISYVQGERQARNVLRESNLNYTI  151 (221)
T ss_dssp             EEESCCCCHH---H--HHHHHHHHHHTTCCEEEEEEETTTTSCSCHHHHHHHHHTSCHHHHHHHHHHHHHHHHSCSEEEE
T ss_pred             EEEcCCCCCh---h--HHHHHHHHHhcCCCeEEEEeeceecCCCCcccccccccccccHHHHHHHHHHHHHHhCCCCEEE
Confidence            9976654322   1  3444444432 2 456554433221111111111111100001223356777888888987654

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=82.61  E-value=12  Score=31.94  Aligned_cols=104  Identities=18%  Similarity=0.168  Sum_probs=66.1

Q ss_pred             CCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCC-HHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CC--
Q 019957          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFS-ENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA--  234 (333)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s-~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~--  234 (333)
                      .++++|=.|++.|   .++..|++.|.  +|+.++.+ ...++...+.+...    ..++.++.+|+.+..     +.  
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~~  103 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQA----GGRAVAIRADNRDAEAIEQAIRET  103 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHH
Confidence            4678998987665   35566666665  88888654 45555555555443    357888999997642     10  


Q ss_pred             ---CCCcceEEeccccccCC-----Ch--------------HHHHHHHHHhccCCcEEEEEEe
Q 019957          235 ---SGFVDAVHAGAALHCWP-----SP--------------SNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       235 ---~~~fD~V~~~~vl~h~~-----d~--------------~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                         -+..|+++.+..+.+..     ++              ..+++.+.+.++++|.++....
T Consensus       104 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS  166 (271)
T 3v2g_A          104 VEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS  166 (271)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence               13689999876553321     11              1345667777888888877654

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=82.55  E-value=11  Score=32.03  Aligned_cols=78  Identities=17%  Similarity=0.297  Sum_probs=52.8

Q ss_pred             CCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeC-------------CHHHHHHHHHHHHhcCcCCCCCeEEEEccCC
Q 019957          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDF-------------SENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (333)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~-------------s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (333)
                      .++++|=.|++.|   .++..|++.|.  +|+.+|.             +...++...+.+...    ..++.++.+|+.
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~   83 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA----NRRIVAAVVDTR   83 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT----TCCEEEEECCTT
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhc----CCeEEEEECCCC
Confidence            4668898887665   35566666665  8999998             566666665555443    457889999987


Q ss_pred             CCC-----CC-----CCCcceEEecccccc
Q 019957          230 RLP-----FA-----SGFVDAVHAGAALHC  249 (333)
Q Consensus       230 ~lp-----~~-----~~~fD~V~~~~vl~h  249 (333)
                      +..     +.     -+..|+++.+..+..
T Consensus        84 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~  113 (277)
T 3tsc_A           84 DFDRLRKVVDDGVAALGRLDIIVANAGVAA  113 (277)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            642     11     146899998766543

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=82.14  E-value=5.3  Score=34.66  Aligned_cols=104  Identities=16%  Similarity=0.182  Sum_probs=65.9

Q ss_pred             CCCeEEEEcCCc----C-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CC-
Q 019957          166 QGGLLVDVSCGS----G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA-  234 (333)
Q Consensus       166 ~~~~vLDiGcG~----G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~-  234 (333)
                      .++++|=.|++.    | .++..|++.|.  +|+.+|.++...+...+.....     ..+.++.+|+.+..     +. 
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~  101 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKRVDPLAESL-----GVKLTVPCDVSDAESVDNMFKV  101 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHH-----TCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHH
Confidence            366889999743    4 25666777765  8999999876555555544442     34678899987642     11 


Q ss_pred             ----CCCcceEEeccccccC---------CCh--------------HHHHHHHHHhccCCcEEEEEEec
Q 019957          235 ----SGFVDAVHAGAALHCW---------PSP--------------SNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       235 ----~~~fD~V~~~~vl~h~---------~d~--------------~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                          -+..|+++.+..+...         .+.              ..+++.+...++.+|.++.....
T Consensus       102 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~  170 (296)
T 3k31_A          102 LAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYY  170 (296)
T ss_dssp             HHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred             HHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEeh
Confidence                1478999987655321         111              12455666677778888876643

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=81.85  E-value=15  Score=31.66  Aligned_cols=77  Identities=21%  Similarity=0.284  Sum_probs=52.3

Q ss_pred             CCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCC------------HHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFS------------ENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s------------~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      .++++|=.|++.|   .++..|++.|.  +|+.+|.+            +..++...+.+...    ..++.++.+|+.+
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~  100 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGA--DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL----GRRIIASQVDVRD  100 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT----TCCEEEEECCTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecccccccccccccCHHHHHHHHHHHHhc----CCceEEEECCCCC
Confidence            4678898888765   35566666665  89999987            56666555555543    3578899999976


Q ss_pred             CC-----CC-----CCCcceEEeccccc
Q 019957          231 LP-----FA-----SGFVDAVHAGAALH  248 (333)
Q Consensus       231 lp-----~~-----~~~fD~V~~~~vl~  248 (333)
                      ..     +.     -+..|+++.+..+.
T Consensus       101 ~~~v~~~~~~~~~~~g~iD~lv~nAg~~  128 (299)
T 3t7c_A          101 FDAMQAAVDDGVTQLGRLDIVLANAALA  128 (299)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            42     10     14789998766543

>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A

Probab=81.75  E-value=0.26  Score=34.03  Aligned_cols=41  Identities=17%  Similarity=0.466  Sum_probs=21.4

Q ss_pred             eecccCCCcc-ccccCCC-----Ccccccccc-CceeeCCCCccccCc
Q 019957           60 LFSCPICYEP-LIRKGPT-----GLTLGAIYR-SGFKCRKCDKTYSSK  100 (333)
Q Consensus        60 ~l~CP~C~~~-l~~~~~~-----~~~~~~~~~-~~~~C~~C~~~~~~~  100 (333)
                      .+.||+|++. +......     ....-.+.. ..+.|++||..|...
T Consensus         2 ~m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~~~   49 (78)
T 3ga8_A            2 HMKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNK   49 (78)
T ss_dssp             -CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEECCH
T ss_pred             ceECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEECH
Confidence            3689999874 4221100     000011112 467899999887543

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=81.53  E-value=8.3  Score=33.27  Aligned_cols=102  Identities=19%  Similarity=0.175  Sum_probs=68.0

Q ss_pred             cCCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---------
Q 019957          165 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------  232 (333)
Q Consensus       165 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------  232 (333)
                      ..++++|=-|++.|   ..+..|++.|.  +|+.+|.+++.++.+.+.+       ..+...+.+|+.+..         
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga--~V~i~~r~~~~l~~~~~~~-------g~~~~~~~~Dv~~~~~v~~~~~~~   97 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGA--RVFITGRRKDVLDAAIAEI-------GGGAVGIQADSANLAELDRLYEKV   97 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------CTTCEEEECCTTCHHHHHHHHHHH
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHc-------CCCeEEEEecCCCHHHHHHHHHHH
Confidence            34778888888776   35566677665  9999999998887765544       335678889987642         


Q ss_pred             -CCCCCcceEEeccccccCCC-----h--------------HHHHHHHHHhccCCcEEEEEEe
Q 019957          233 -FASGFVDAVHAGAALHCWPS-----P--------------SNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d-----~--------------~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                       -.-+..|+++.+..+.....     +              -...+.+...|+.+|.++....
T Consensus        98 ~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS  160 (273)
T 4fgs_A           98 KAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGS  160 (273)
T ss_dssp             HHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECC
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEee
Confidence             01257899887665533211     1              1345666778888888777653

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=80.97  E-value=13  Score=31.83  Aligned_cols=77  Identities=16%  Similarity=0.188  Sum_probs=51.6

Q ss_pred             cCCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeC-CHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC-----C-
Q 019957          165 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDF-SENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-----A-  234 (333)
Q Consensus       165 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~-s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-----~-  234 (333)
                      ..++++|=.|++.|   .++..|++.|.  +|+.+|. ++..++...+.+...    ..++.++.+|+.+...     . 
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~  100 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF--DIAITGIGDAEGVAPVIAELSGL----GARVIFLRADLADLSSHQATVDA  100 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCHHHHHHHHHHHHHT----TCCEEEEECCTTSGGGHHHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHH
Confidence            45678888887665   34556666665  8999995 666666665555543    3578999999977531     0 


Q ss_pred             ----CCCcceEEecccc
Q 019957          235 ----SGFVDAVHAGAAL  247 (333)
Q Consensus       235 ----~~~fD~V~~~~vl  247 (333)
                          -+..|+++.+..+
T Consensus       101 ~~~~~g~iD~lvnnAg~  117 (280)
T 4da9_A          101 VVAEFGRIDCLVNNAGI  117 (280)
T ss_dssp             HHHHHSCCCEEEEECC-
T ss_pred             HHHHcCCCCEEEECCCc
Confidence                1378999987665

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=80.80  E-value=9.6  Score=32.12  Aligned_cols=74  Identities=24%  Similarity=0.292  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----C----
Q 019957          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----F----  233 (333)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~----  233 (333)
                      .++++|=.|++.|   .++..|++.|.  +|+.+|.++..++...+.+       ..++.++.+|+.+..     +    
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~~~~   77 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEI-------GPAAYAVQMDVTRQDSIDAAIAATV   77 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCCceEEEeeCCCHHHHHHHHHHHH
Confidence            4568888887654   34556666665  8999999988776655543       346788999987642     1    


Q ss_pred             -CCCCcceEEeccccc
Q 019957          234 -ASGFVDAVHAGAALH  248 (333)
Q Consensus       234 -~~~~fD~V~~~~vl~  248 (333)
                       .-+..|+++.+..+.
T Consensus        78 ~~~g~id~lv~~Ag~~   93 (259)
T 4e6p_A           78 EHAGGLDILVNNAALF   93 (259)
T ss_dssp             HHSSSCCEEEECCCCC
T ss_pred             HHcCCCCEEEECCCcC
Confidence             113789999876653

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=80.79  E-value=9.8  Score=32.53  Aligned_cols=76  Identities=14%  Similarity=0.112  Sum_probs=52.6

Q ss_pred             CCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC---------
Q 019957          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---------  233 (333)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---------  233 (333)
                      .++++|=.|++.|   .++..|++.|.  +|+.+|.++..++...+.+...    ..++.++.+|+.+...         
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~~~~~~~~~~  105 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA--HVILHGVKPGSTAAVQQRIIAS----GGTAQELAGDLSEAGAGTDLIERAE  105 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSTTTTHHHHHHHHHT----TCCEEEEECCTTSTTHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc----CCeEEEEEecCCCHHHHHHHHHHHH
Confidence            4668888887654   34556666665  8999999887766666665543    4578899999977531         


Q ss_pred             CCCCcceEEecccc
Q 019957          234 ASGFVDAVHAGAAL  247 (333)
Q Consensus       234 ~~~~fD~V~~~~vl  247 (333)
                      ..+..|+++.+..+
T Consensus       106 ~~g~iD~lvnnAg~  119 (275)
T 4imr_A          106 AIAPVDILVINASA  119 (275)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HhCCCCEEEECCCC
Confidence            01478999987664

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=80.43  E-value=9.9  Score=32.57  Aligned_cols=75  Identities=24%  Similarity=0.297  Sum_probs=51.7

Q ss_pred             CCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CC---
Q 019957          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA---  234 (333)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~---  234 (333)
                      .++++|=.|++.|   .++..|++.|.  +|+.+|.++..++...+.+       ..++.++.+|+.+..     +.   
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~d~~~v~~~~~~~~   98 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC--HVLCADIDGDAADAAATKI-------GCGAAACRVDVSDEQQIIAMVDACV   98 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHH-------CSSCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHc-------CCcceEEEecCCCHHHHHHHHHHHH
Confidence            4668888887665   35566666665  9999999988776665543       346788899987642     10   


Q ss_pred             --CCCcceEEecccccc
Q 019957          235 --SGFVDAVHAGAALHC  249 (333)
Q Consensus       235 --~~~fD~V~~~~vl~h  249 (333)
                        -+..|+++.+..+.+
T Consensus        99 ~~~g~iD~lvnnAg~~~  115 (277)
T 3gvc_A           99 AAFGGVDKLVANAGVVH  115 (277)
T ss_dssp             HHHSSCCEEEECCCCCC
T ss_pred             HHcCCCCEEEECCCCCC
Confidence              136899998766543

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=80.09  E-value=13  Score=30.59  Aligned_cols=78  Identities=22%  Similarity=0.172  Sum_probs=52.4

Q ss_pred             CCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CC----
Q 019957          167 GGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FA----  234 (333)
Q Consensus       167 ~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~----  234 (333)
                      ++++|=.|++.|   .++..|.+.|.  +|+.++.++..++...+.+....   ..++.++.+|+.+..     +.    
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~   76 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHELMQEQ---GVEVFYHHLDVSKAESVEEFSKKVLE   76 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH---CCCEEEEECCTTCHHHHHHHCC-HHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc---CCeEEEEEeccCCHHHHHHHHHHHHH
Confidence            457888886654   34556666665  89999999887777666554221   457889999997642     11    


Q ss_pred             -CCCcceEEecccccc
Q 019957          235 -SGFVDAVHAGAALHC  249 (333)
Q Consensus       235 -~~~fD~V~~~~vl~h  249 (333)
                       -+..|+++.+..+.+
T Consensus        77 ~~g~id~li~~Ag~~~   92 (235)
T 3l77_A           77 RFGDVDVVVANAGLGY   92 (235)
T ss_dssp             HHSSCSEEEECCCCCC
T ss_pred             hcCCCCEEEECCcccc
Confidence             137899998776544

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=80.02  E-value=7.9  Score=33.02  Aligned_cols=85  Identities=8%  Similarity=0.108  Sum_probs=50.8

Q ss_pred             eEEEEcCCc-C-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccc
Q 019957          169 LLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (333)
Q Consensus       169 ~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (333)
                      +|.=||+|. | .++..+.+.+.  +|+++|.++..++.+.+    .+.   . .. ...+..+.    ...|+|+..--
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~--~V~~~~~~~~~~~~~~~----~g~---~-~~-~~~~~~~~----~~~D~vi~av~   66 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVE----RQL---V-DE-AGQDLSLL----QTAKIIFLCTP   66 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHH----TTS---C-SE-EESCGGGG----TTCSEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHh----CCC---C-cc-ccCCHHHh----CCCCEEEEECC
Confidence            577789886 4 34556666664  89999999887766543    221   1 11 12333322    36798887532


Q ss_pred             cccCCChHHHHHHHHHhccCCcEEE
Q 019957          247 LHCWPSPSNAVAEISRILRSGGVFV  271 (333)
Q Consensus       247 l~h~~d~~~~l~~~~r~LkpgG~l~  271 (333)
                      -.   ....+++++...++++..++
T Consensus        67 ~~---~~~~~~~~l~~~~~~~~~vv   88 (279)
T 2f1k_A           67 IQ---LILPTLEKLIPHLSPTAIVT   88 (279)
T ss_dssp             HH---HHHHHHHHHGGGSCTTCEEE
T ss_pred             HH---HHHHHHHHHHhhCCCCCEEE
Confidence            21   12456777777788877554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	333
d1p91a_	268	c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher	4e-16
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	2e-12
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	2e-11
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	3e-11
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	3e-10
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	8e-10
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	1e-09
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	5e-09
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	1e-08
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	3e-08
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	4e-08
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	1e-07
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	2e-07
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	2e-07
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	3e-07
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	5e-07
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	4e-06
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	1e-05
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	2e-05
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	2e-05
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	3e-05
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-04
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	3e-04
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	4e-04
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	5e-04
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	6e-04
d1ve3a1	226	c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A	0.002

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

 Score = 75.0 bits (183), Expect = 4e-16
 Identities = 42/216 (19%), Positives = 83/216 (38%), Gaps = 40/216 (18%)

Query: 61  FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKP 120
           FSCP+C++PL R+  +           + C +  +   +K+ Y++L  +   +       
Sbjct: 2   FSCPLCHQPLSREKNS-----------YICPQRHQFDMAKEGYVNLLPVQHKRSRDPGD- 49

Query: 121 ASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQ-EYFKSAQGGLLVDVSCGSGL 179
            S E+ ++           R+ F  +G   P  +  +AQ       +   ++D+ CG G 
Sbjct: 50  -SAEMMQA-----------RRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGY 97

Query: 180 FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVD 239
           ++  FA +        LD S+  ++       Q    +            RLPF+   +D
Sbjct: 98  YTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVA--------SSHRLPFSDTSMD 149

Query: 240 AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF 275
           A+    A            E++R+++ GG  +  T 
Sbjct: 150 AIIRIYAPC-------KAEELARVVKPGGWVITATP 178

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (155), Expect = 2e-12
 Identities = 28/210 (13%), Positives = 64/210 (30%), Gaps = 47/210 (22%)

Query: 154 EFKMAQEYFKSAQ--GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK 211
           + +   + F + +  G  L+D+  G  ++    A    +  +   DF E   ++   +++
Sbjct: 40  KLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSA-CSHFEDITMTDFLEVNRQELGRWLQ 98

Query: 212 QDN---------------------------TILTSNLALVRADVCR------LPFASGFV 238
           ++                             +      ++  DV +         A    
Sbjct: 99  EEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPA 158

Query: 239 DAVHAGAALHC----WPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERIL 294
           DA+ +   L        S   A+  I+ +LR GG  +    L  +   +   R+      
Sbjct: 159 DALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTV---- 214

Query: 295 QNYNYLTEEEIEDLCTSCGLTNYTSKVQQS 324
                ++EEE+ +     G      +    
Sbjct: 215 ---VPVSEEEVREALVRSGYKVRDLRTYIM 241

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 60.4 bits (145), Expect = 2e-11
 Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 7/161 (4%)

Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++DV+ G G  +  FA       VVA D +E++L+    FI+ +       +      + 
Sbjct: 19  VLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP 76

Query: 230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST--SLTGR 287
                   V    A    H +P+P++ V+E  R+L+ GG  +        +         
Sbjct: 77  FTDERFHIVTCRIAA---HHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNY 133

Query: 288 VLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMF 328
           V +ER   ++    + +   +    G             +F
Sbjct: 134 VEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIF 174

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 60.0 bits (144), Expect = 3e-11
 Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 7/149 (4%)

Query: 170 LVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC 229
           ++D+  G+G  +  F+        + +D ++ M+     F ++            +    
Sbjct: 20  VLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRF---QQGTAE 74

Query: 230 RLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSST--SLTGR 287
            LPF     D +    A H +     AV E++R+L+  G F+                  
Sbjct: 75  SLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNH 134

Query: 288 VLRERILQNYNYLTEEEIEDLCTSCGLTN 316
           + R R   +    +  E + + ++  L  
Sbjct: 135 LNRLRDPSHVRESSLSEWQAMFSANQLAY 163

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 56.4 bits (135), Expect = 3e-10
 Identities = 32/198 (16%), Positives = 62/198 (31%), Gaps = 37/198 (18%)

Query: 151 PDEEF---------------KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVA 195
           PD+EF                +     +  +  + VDV CG+G  + + A       V A
Sbjct: 3   PDDEFIKNPSVPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRR--VYA 60

Query: 196 LDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSN 255
           +D +   +      +++    L  N+ L+  D          +D    G +         
Sbjct: 61  IDRNPEAISTTEMNLQRHG--LGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEI-- 116

Query: 256 AVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 315
            +  I   L+ GG  + T  L  T   ++         L++  +       ++     L 
Sbjct: 117 -LRIIKDKLKPGGRIIVTAILLETKFEAM-------ECLRDLGFDVNITELNIARGRALD 168

Query: 316 NYTSKVQQSFIMFAAQKP 333
             T        M  ++ P
Sbjct: 169 RGT--------MMVSRNP 178

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (136), Expect = 8e-10
 Identities = 28/226 (12%), Positives = 61/226 (26%), Gaps = 31/226 (13%)

Query: 124 ELFRSPFVSFL-------YERGW-RQNFNRSGFPGPDE-----EFKMAQEYFKSAQ---G 167
           +L   P    L       Y           +  P   E      F +  +     +    
Sbjct: 93  KLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDD 152

Query: 168 GLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT------SNL 221
            L VD+  G G    + A +        ++ ++   +      ++    +       +  
Sbjct: 153 DLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEY 212

Query: 222 ALVRADVCRLPFASGFVDA-VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTS 280
            L R D     +     +  V         P   + + E    ++ GG  V +       
Sbjct: 213 TLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAP-- 270

Query: 281 STSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFI 326
                   +  R L +   +    + +L    G  ++T K    ++
Sbjct: 271 ----LNFRINSRNLSDIGTIM--RVVELSPLKGSVSWTGKPVSYYL 310

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 55.4 bits (132), Expect = 1e-09
 Identities = 24/168 (14%), Positives = 52/168 (30%), Gaps = 7/168 (4%)

Query: 149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYD 208
           P  +E++       +   G  ++D+  GSG     +A+    +    +D S     Q   
Sbjct: 16  PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGIT-GTGIDMSSLFTAQAKR 74

Query: 209 FIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGG 268
             ++       +     A              V    A       + A   +++ L+ GG
Sbjct: 75  RAEELGVSERVHFIHNDAAGYVANEKCDVAACVG---ATWIAGGFAGAEELLAQSLKPGG 131

Query: 269 VFV-GTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 315
           + + G  + R   +T    +     +    ++LT   +       G  
Sbjct: 132 IMLIGEPYWRQLPATEEIAQAC--GVSSTSDFLTLPGLVGAFDDLGYD 177

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 54.1 bits (129), Expect = 5e-09
 Identities = 17/129 (13%), Positives = 35/129 (27%), Gaps = 6/129 (4%)

Query: 144 NRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENM 202
            R  +   D    +    +K  +   +VD  CG G                  +D  E +
Sbjct: 5   TRDLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETL 64

Query: 203 LRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISR 262
           L +  +  +                       +   D     A L    +P   + ++  
Sbjct: 65  LAEARELFRLLPYDSEFLE-----GDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIH 119

Query: 263 ILRSGGVFV 271
            ++ GG  +
Sbjct: 120 SVKKGGKII 128

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 52.4 bits (125), Expect = 1e-08
 Identities = 17/149 (11%), Positives = 47/149 (31%), Gaps = 6/149 (4%)

Query: 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 219
           +     +   ++ +   +G      A       V A++++  ++R+  D   +   I+  
Sbjct: 68  KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIP- 126

Query: 220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYT 279
              ++        +A+           +         +      L+ GG  +     R  
Sbjct: 127 ---ILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSI 183

Query: 280 SSTSLTGRVLRE--RILQNYNYLTEEEIE 306
             T     + +E   IL+   +   +E++
Sbjct: 184 DVTKDPKEIFKEQKEILEAGGFKIVDEVD 212

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 3e-08
 Identities = 35/234 (14%), Positives = 64/234 (27%), Gaps = 53/234 (22%)

Query: 124 ELFRSPFVSFLYERGWRQNFNRSGFPGPDEEF-----KMAQEYFKSA--QGGLLVDVSCG 176
           + ++  F+   Y       ++  G P P+ E      +   + F     QG  L+D+  G
Sbjct: 5   DEYQKHFLPRDY---LATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSG 61

Query: 177 SGLFSRKFAKSGTYSGVVALDFSENMLRQC------------------------------ 206
             ++    A   ++  +   DF++    +                               
Sbjct: 62  PTIYQV-LAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRW 120

Query: 207 -YDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHC----WPSPSNAVAEIS 261
                K    +       V       P      D V    A+ C      +   A+  ++
Sbjct: 121 EEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLA 180

Query: 262 RILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 315
            +L+ GG  V T  LR  S                   L + E+E      G  
Sbjct: 181 SLLKPGGHLVTTVTLRLPSYMVGKREFSC-------VALEKGEVEQAVLDAGFD 227

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 4e-08
 Identities = 22/212 (10%), Positives = 58/212 (27%), Gaps = 31/212 (14%)

Query: 135 YERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLL------------VDVSCGSGLFSR 182
           Y   +R+  N S       E +  QE+      G++            + +  G+G    
Sbjct: 3   YVESFRRFLNHST------EHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDL 56

Query: 183 KFAK------SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----- 231
           +          G       ++ S   + +  + + + + +     A  +           
Sbjct: 57  QILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML 116

Query: 232 -PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR 290
                   D +H    L+        +     +L +    +       +    L  +   
Sbjct: 117 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGS 176

Query: 291 ERILQNYN-YLTEEEIEDLCTSCGLTNYTSKV 321
                +   Y+T +++  +  + GL      +
Sbjct: 177 RFPQDDLCQYITSDDLTQMLDNLGLKYECYDL 208

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 49.3 bits (117), Expect = 1e-07
 Identities = 31/192 (16%), Positives = 61/192 (31%), Gaps = 24/192 (12%)

Query: 127 RSPFVSFLYER---GWRQ-NFNRSGFPGPDEEFKMAQEYFKSAQ-----GGLLVDVSCGS 177
           +S + S   E+   G+R+    RS         K+A    K  +        ++ +   S
Sbjct: 17  KSKYGSHYGEKVFDGYREWVPWRS---------KLAAMILKGHRLKLRGDERVLYLGAAS 67

Query: 178 GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF 237
           G      A       + A+++S     +  + +++ N     N+  +  D  +    SG 
Sbjct: 68  GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN-----NIIPLLFDASKPWKYSGI 122

Query: 238 VDAVHAG-AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQN 296
           V+ V      +          A     L+  G  V     R   ST+    V +  + + 
Sbjct: 123 VEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEM 182

Query: 297 YNYLTEEEIEDL 308
                  +   L
Sbjct: 183 EGDFKIVKHGSL 194

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 19/152 (12%), Positives = 43/152 (28%), Gaps = 12/152 (7%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA 226
           GG +++V  G  + + K  ++        ++ ++ + ++  D+  +    +     L   
Sbjct: 54  GGRVLEVGFGMAIAASKVQEAPIDE-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWED 112

Query: 227 DVCRLPFAS---GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTS 283
               LP         D              +       R+L+ GGV        +     
Sbjct: 113 VAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGE--- 169

Query: 284 LTGRVLRERILQNYNYLTEEEIEDLCTSCGLT 315
                L +    +   + EE         G  
Sbjct: 170 -----LMKSKYSDITIMFEETQVPALLEAGFR 196

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.2 bits (116), Expect = 2e-07
 Identities = 26/164 (15%), Positives = 51/164 (31%), Gaps = 11/164 (6%)

Query: 121 ASTELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLF 180
            + E     +      R W Q +         E         +      ++DV+CG+G+ 
Sbjct: 12  VAAEGIPDQYADGEAARVW-QLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVD 70

Query: 181 SRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRLPFASGF 237
           S    + G + + V A D       +     +++       +           +P   GF
Sbjct: 71  SIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGF 130

Query: 238 VDAVHAGAALHCWPSPSN-------AVAEISRILRSGGVFVGTT 274
              +  G +    P           A+  I+ ++R GG+ V   
Sbjct: 131 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 48.4 bits (114), Expect = 3e-07
 Identities = 21/170 (12%), Positives = 45/170 (26%), Gaps = 21/170 (12%)

Query: 157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI 216
           M + +    + G L+++    G F+ +  +    + +  ++ SE  +      +K   T 
Sbjct: 11  MVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITY 68

Query: 217 LTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEI-SRILRSGGVFVGTTF 275
                                 D +     L     P   +  I    L  GG       
Sbjct: 69  --------IHSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCP 120

Query: 276 LRYTSSTSLTGRVL----------RERILQNYNYLTEEEIEDLCTSCGLT 315
                S  +  ++            E    +      + +E   +  GL 
Sbjct: 121 NANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQ 170

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 48.0 bits (113), Expect = 5e-07
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 8/115 (6%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           +G  ++D+ CG G    K+ ++G       +D +E  +       +  N      +    
Sbjct: 24  RGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARV--RARNMKRRFKVFFRA 80

Query: 226 ADVCRLPFASGFV-DAVHAGAALHCWPSPSNAV----AEISRILRSGGVFVGTTF 275
            D        G   D + +  + H   S S ++      I+R LR GG F+ T  
Sbjct: 81  QDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 44.6 bits (104), Expect = 4e-06
 Identities = 22/180 (12%), Positives = 51/180 (28%), Gaps = 12/180 (6%)

Query: 160 EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS 219
              K    G  +D+ CG+G  S   A +G        + +          +++       
Sbjct: 24  AAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPA------SMANLERIKAAEGL 77

Query: 220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR 277
           +               G  D + +   +    +      +A + R  + GG  +    + 
Sbjct: 78  DNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137

Query: 278 YTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYT----SKVQQSFIMFAAQKP 333
                   G     +  +   Y    ++       G  + T    ++++  F    A+K 
Sbjct: 138 TPDFPCTVGFPFAFKEGELRRYYEGWDMLKYNEDVGELHRTDENGNRIKLRFATMLARKT 197

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 12/145 (8%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G  +++   GSG  S   +K+    G V++ +  ++         K        +     
Sbjct: 99  GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEW 158

Query: 226 ADVCRLPF--ASGFVDAVHAGAALHCW---PSPSNAVAEISRILRSGGVFVGTTFLRYTS 280
            D         SG  + + +           +P   +      L+ GGV        Y  
Sbjct: 159 PDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAV-----YVV 213

Query: 281 STSLTGRVLRERILQNYNYLTEEEI 305
           + +    +L + I      L+ E+I
Sbjct: 214 NITQVIELL-DGIRTCELALSCEKI 237

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 7/104 (6%)

Query: 171 VDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR 230
           +DV  G+G+     AK+G    V+ ++ S                 L   + +++  V  
Sbjct: 38  LDVGSGTGILCMFAAKAGARK-VIGIECSSISDYAVKIVKANK---LDHVVTIIKGKVEE 93

Query: 231 LPFASGFVDAVHAGAALHCWPSPSN---AVAEISRILRSGGVFV 271
           +      VD + +    +C    S     +    + L   G+  
Sbjct: 94  VELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 25/143 (17%), Positives = 53/143 (37%), Gaps = 16/143 (11%)

Query: 167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           G  +++V  GSG  S     +    G +  ++  E+ L++  D + +       N+   R
Sbjct: 86  GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE--FYDIGNVRTSR 143

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLT 285
           +D+        +       A +   P P N V +I+ +++ G V        Y  +   +
Sbjct: 144 SDIADFISDQMYD------AVIADIPDPWNHVQKIASMMKPGSVATF-----YLPNFDQS 192

Query: 286 GRVLRERILQNYNYLTEEEIEDL 308
            + +    L        E +E +
Sbjct: 193 EKTVLS--LSASGMHHLETVELM 213

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 3e-05
 Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR 225
           +  +++DV CG+G+ S   AK+G    V+ +D SE + +            L   + L++
Sbjct: 35  KDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSEILYQAMDIIRLNK---LEDTITLIK 90

Query: 226 ADVCRLPFASGFVDAVHAGAALHCWPSPSNA---VAEISRILRSGGVFV 271
             +  +      VD + +    +     S     +   ++ L  GG   
Sbjct: 91  GKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 12/130 (9%), Positives = 33/130 (25%), Gaps = 12/130 (9%)

Query: 154 EFKMAQEYFKSAQ---GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFI 210
                 + ++  Q   G   +D+  G G    + A     +     +  ++         
Sbjct: 201 LPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQY 260

Query: 211 KQDN--------TILTSNLALVRADVCRLPFASGFVDAVHAGAALHC-WPSPSNAVAEIS 261
           ++           +     +L ++ V     A                    +  V +I 
Sbjct: 261 EELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKIL 320

Query: 262 RILRSGGVFV 271
           +  + G   +
Sbjct: 321 QTAKVGCKII 330

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 17/128 (13%)

Query: 159 QEYFKS---AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT 215
           Q+Y+ S     G  ++   CG        +  G +  VV  + SE  + + +    +   
Sbjct: 10  QQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYH--VVGAELSEAAVERYFTERGEQPH 67

Query: 216 ILTSNLALV---------RADVCRLPFAS-GFVDAVHAGAALHCWPSPSNA--VAEISRI 263
           I +     V           D   L     G   A +  AA+   P+      V  +  +
Sbjct: 68  ITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEAL 127

Query: 264 LRSGGVFV 271
           +      +
Sbjct: 128 MPQACSGL 135

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 10/119 (8%)

Query: 172 DVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL 231
           DV CG+G+ S   AK G    V+ +D S  +               +  + L+R  +  +
Sbjct: 44  DVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNG---FSDKITLLRGKLEDV 99

Query: 232 PFASGFVDAVHA---GAALHCWPSPSNAVAEISRILRSGGVFV---GTTFLRYTSSTSL 284
                 VD + +   G  L         +      L  GG+      +  L     +  
Sbjct: 100 HLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQY 158

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 20/168 (11%), Positives = 43/168 (25%), Gaps = 15/168 (8%)

Query: 152 DEEFKMAQEYFKSA--QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDF 209
            +      E            +D++CG+G  +                ++ ++ ++    
Sbjct: 21  KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF------KNTWAVDLSQEMLSE 74

Query: 210 IKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPS---NAVAEISRILRS 266
            +           L   D+  L     F        + +              +S  L+ 
Sbjct: 75  AENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKE 134

Query: 267 GGVFVGTTFLRYTSSTSLTGRVL----RERILQNYNYLTEEEIEDLCT 310
           GGVF+      Y  S  L          E      N   ++ +    +
Sbjct: 135 GGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYIS 182

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.6 bits (88), Expect = 6e-04
 Identities = 35/198 (17%), Positives = 68/198 (34%), Gaps = 14/198 (7%)

Query: 124 ELFRSPFVSFLYERGWRQNFNRSGFPGPDEEFKMAQEYFKSA---QGGLLVDVSCGSGLF 180
           EL+    ++  Y+  +R+   R        E    +E FK     +   ++D++CG+G+ 
Sbjct: 3   ELYTL--LAEYYDTIYRRRIER-----VKAEIDFVEEIFKEDAKREVRRVLDLACGTGIP 55

Query: 181 SRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA 240
           + + A+ G    VV LD  E MLR      K+ N  +      V     +  F    V  
Sbjct: 56  TLELAERGYE--VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD--AVTM 111

Query: 241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYL 300
             +              ++++  L+ GGVF+      +            ++  +    +
Sbjct: 112 FFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIM 171

Query: 301 TEEEIEDLCTSCGLTNYT 318
              E+E            
Sbjct: 172 DWREVEPAVQKLRFKRLV 189

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 32/180 (17%), Positives = 63/180 (35%), Gaps = 15/180 (8%)

Query: 156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT 215
            +  +Y K    G ++D++CG G FS      G            ++        ++   
Sbjct: 29  PLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGFE------VVGVDISEDMIRKAREYAK 80

Query: 216 ILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGT 273
              SN+  +  D  +L F     D V    ++  +     +    E+ R+L+  G F+  
Sbjct: 81  SRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFI-- 138

Query: 274 TFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQSFIMFAAQKP 333
             + +T    L  R L+E ++    Y   + I D      +  + S+     + F     
Sbjct: 139 --MYFTDLRELLPR-LKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWGK 195

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	333
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.95
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.95
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.94
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.93
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.92
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.92
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.91
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.9
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.9
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.89
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.87
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.86
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.85
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.85
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.85
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.85
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.84
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.84
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.84
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.83
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.82
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.81
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.8
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.8
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.8
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.8
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.79
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.79
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.78
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.77
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.76
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.75
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.73
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.73
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.72
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.72
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.71
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.7
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.7
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.68
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.67
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.63
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.63
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.63
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.61
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.59
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.58
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.57
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.55
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.52
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.51
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.5
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.49
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.44
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.41
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.35
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.34
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.31
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.31
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.21
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.19
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.16
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.15
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.15
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.15
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.15
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.13
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.11
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.11
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.06
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.99
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.97
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.96
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.94
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.83
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.8
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.79
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.77
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.76
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.76
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.73
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.73
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.71
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.69
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.68
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.68
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.65
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.62
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.6
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.6
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.56
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.54
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.5
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.5
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.41
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.35
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.26
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.2
d2jnya1	59	Uncharacterized protein Cgl1405/cg1592 {Corynebact	98.1
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.06
d2pk7a1	59	Uncharacterized protein PFL1779 {Pseudomonas fluor	98.03
d2hf1a1	59	Hypothetical protein CV3345 {Chromobacterium viola	98.03
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.67
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.64
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.6
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.57
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.31
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.26
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.26
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.25
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.24
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.19
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.19
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.07
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.04
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.9
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	96.85
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	96.82
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.77
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.72
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.57
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.42
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.23
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	96.16
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.1
d2akla2	38	Hypothetical protein PA0128, N-terminal domain {Ps	95.95
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.74
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.68
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.31
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.3
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.18
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.12
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.11
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.04
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.9
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.8
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	94.73
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.46
d1dl6a_	58	Transcription initiation factor TFIIB, N-terminal	94.24
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	94.18
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	94.17
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	94.14
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	93.57
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	93.36
d1qypa_	57	RBP9 subunit of RNA polymerase II {Archaeon Thermo	93.12
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	93.05
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	92.77
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.77
d1vqoz1	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	91.73
d1twfi2	72	RBP9 subunit of RNA polymerase II {Baker's yeast (	91.33
d1jj2y_	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	91.25
d1pfta_	50	Transcription initiation factor TFIIB, N-terminal	91.13
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	90.94
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	90.63
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	90.31
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	90.22
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	90.13
d1rqga3	35	Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyro	89.57
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	89.47
d1pfva3	35	Methionyl-tRNA synthetase (MetRS), Zn-domain {Esch	88.78
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	87.62
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	87.54
d2ct7a1	73	Ring finger protein 31 {Human (Homo sapiens) [TaxI	86.65
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	86.47
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	86.2
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	85.72
d1wiia_	85	Hypothetical UPF0222 protein MGC4549 {Mouse (Mus m	85.29
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	84.7
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	84.38
d2k4xa1	55	Ribosomal protein S27ae {Thermoplasma acidophilum	83.35
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	83.02
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	82.37
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	82.26
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	81.7
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	81.53
d1twfl_	46	RBP12 subunit of RNA polymerase II {Baker's yeast	81.42
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	81.3
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	81.0
d1neea2	37	Zinc-binding domain of translation initiation fact	80.94
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	80.32

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=4.9e-28  Score=213.37  Aligned_cols=178  Identities=23%  Similarity=0.398  Sum_probs=134.3

Q ss_pred             ecccCCCccccccCCCCccccccccCceeeCCCCccccCcCCceeeecccCCCCcCCCCccccccccCcchhHHHHhhHH
Q 019957           61 FSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVISGLKDYTEVKPASTELFRSPFVSFLYERGWR  140 (333)
Q Consensus        61 l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~  140 (333)
                      |+||+|+++|....           +.++|.+|++.+..++||+++++......+....  ..+++.           .+
T Consensus         2 f~CP~C~~~L~~~~-----------~~l~C~~~h~fd~~~~Gy~~ll~~~~~~~~~~~~--~~~~~~-----------ar   57 (268)
T d1p91a_           2 FSCPLCHQPLSREK-----------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGD--SAEMMQ-----------AR   57 (268)
T ss_dssp             BBCTTTCCBCEEET-----------TEEECTTCCEEEBCTTSCEECSCSSSSCSCCCSS--SHHHHH-----------HH
T ss_pred             ccCCCCChhhhcCC-----------CeEECCCCCccccccCceEecccccccccCCCCC--CHHHHH-----------HH
Confidence            79999999986543           3799999988778889999998764433322110  011111           12


Q ss_pred             hhcccCCCCC--cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCC
Q 019957          141 QNFNRSGFPG--PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILT  218 (333)
Q Consensus       141 ~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~  218 (333)
                      +.+...+++.  .+.....+...+. .++.+|||||||+|.++..+++.+++.+++|+|+|+.+++.|+++        .
T Consensus        58 ~~~l~~g~~~~l~~~~~~~l~~~~~-~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~--------~  128 (268)
T d1p91a_          58 RAFLDAGHYQPLRDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR--------Y  128 (268)
T ss_dssp             HHHHTTTTTHHHHHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH--------C
T ss_pred             HHHHHcCchHHHHHHHHHHHHHhcC-CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc--------c
Confidence            3333333221  1222233334333 456799999999999999999998888999999999999999875        5


Q ss_pred             CCeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957          219 SNLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       219 ~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      +++.++++|+.++|+++++||+|++.++++|       ++|+.|+|||||++++.+++..
T Consensus       129 ~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~~  181 (268)
T d1p91a_         129 PQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGPR  181 (268)
T ss_dssp             TTSEEEECCTTSCSBCTTCEEEEEEESCCCC-------HHHHHHHEEEEEEEEEEEECTT
T ss_pred             ccccceeeehhhccCCCCCEEEEeecCCHHH-------HHHHHHHhCCCcEEEEEeeCCc
Confidence            6899999999999999999999999999887       6889999999999999998753

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.95  E-value=5.2e-27  Score=202.02  Aligned_cols=160  Identities=19%  Similarity=0.278  Sum_probs=133.8

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      ..+.+.++..++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.|++++...+   .+++.++++|++++|+++
T Consensus         5 ~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~~---~~~i~~~~~d~~~l~~~~   79 (231)
T d1vl5a_           5 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNG---HQQVEYVQGDAEQMPFTD   79 (231)
T ss_dssp             HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCC-CCCSCT
T ss_pred             HHHHHhcCCCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhcccccc---cccccccccccccccccc
Confidence            4566667778889999999999999999999876  99999999999999999988876   678999999999999999


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCC-cchhhHHHHH-hhhccCCCCCHHHHHHHHHhCC
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSS-TSLTGRVLRE-RILQNYNYLTEEEIEDLCTSCG  313 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~t~~~l~~ll~~aG  313 (333)
                      ++||+|++.+++||++|+.++++++.++|||||++++.++..+... ...+...+.. ....+.+.++.+++.++++++|
T Consensus        80 ~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  159 (231)
T d1vl5a_          80 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAG  159 (231)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHT
T ss_pred             cccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCC
Confidence            9999999999999999999999999999999999999887654211 1111111211 2346778899999999999999


Q ss_pred             CcEEEEE
Q 019957          314 LTNYTSK  320 (333)
Q Consensus       314 f~~v~~~  320 (333)
                      |++++..
T Consensus       160 f~~~~~~  166 (231)
T d1vl5a_         160 FELEELH  166 (231)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEE
Confidence            9987754

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.94  E-value=3.5e-26  Score=197.42  Aligned_cols=158  Identities=16%  Similarity=0.236  Sum_probs=135.5

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (333)
Q Consensus       155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (333)
                      .+++.+.+..+++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+   ..++.++++|++++|++
T Consensus         5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A~~~~~~~~---~~~~~~~~~d~~~~~~~   79 (234)
T d1xxla_           5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKG---VENVRFQQGTAESLPFP   79 (234)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHT---CCSEEEEECBTTBCCSC
T ss_pred             HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhhhhhhcccc---ccccccccccccccccc
Confidence            46677888888999999999999999999999875  99999999999999999988876   56899999999999999


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHH---HH-HhhhccCCCCCHHHHHHHHH
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV---LR-ERILQNYNYLTEEEIEDLCT  310 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~t~~~l~~ll~  310 (333)
                      +++||+|++.++++|++|+..+++++.++|||||++++.+.....  .+.+...   +. ...+.|...++..++..+++
T Consensus        80 ~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (234)
T d1xxla_          80 DDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPE--DPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFS  157 (234)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCS--SHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHH
T ss_pred             ccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCC--CHHHHHHHHHHHhhCCCcccccCCHHHHHHHHH
Confidence            999999999999999999999999999999999999998876532  2221221   11 13446778889999999999


Q ss_pred             hCCCcEEEE
Q 019957          311 SCGLTNYTS  319 (333)
Q Consensus       311 ~aGf~~v~~  319 (333)
                      ++||.+...
T Consensus       158 ~~gf~~~~~  166 (234)
T d1xxla_         158 ANQLAYQDI  166 (234)
T ss_dssp             HTTEEEEEE
T ss_pred             HCCCceeEE
Confidence            999987654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.93  E-value=5.1e-25  Score=195.42  Aligned_cols=156  Identities=15%  Similarity=0.156  Sum_probs=129.7

Q ss_pred             hhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcce
Q 019957          161 YFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA  240 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~  240 (333)
                      .....++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|+++....|+  ..++.++++|+.++|+++++||+
T Consensus        62 ~~~l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl--~~~v~~~~~d~~~l~~~~~sfD~  138 (282)
T d2o57a1          62 TGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGL--ADNITVKYGSFLEIPCEDNSYDF  138 (282)
T ss_dssp             TTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTC--TTTEEEEECCTTSCSSCTTCEEE
T ss_pred             hcCCCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccc--cccccccccccccccccccccch
Confidence            3345678899999999999999998874 34999999999999999999998886  67899999999999999999999


Q ss_pred             EEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                      |++..+++|++++..+++++.++|||||+|++.++.............+.... ......+.+++..+++++||+.+...
T Consensus       139 V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~l~~~Gf~~i~~~  217 (282)
T d2o57a1         139 IWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRI-KLHDMGSLGLYRSLAKECGLVTLRTF  217 (282)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHH-TCSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             hhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHh-ccCCCCCHHHHHHHHHHcCCceEEEE
Confidence            99999999999999999999999999999999988765333222222222221 22345688999999999999988754

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=7.2e-25  Score=185.57  Aligned_cols=153  Identities=18%  Similarity=0.265  Sum_probs=122.8

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++.+|||||||+|.++..+.      +++|+|+|+.+++.++++          ++.++++|++++++.+++||+|++.
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~----------~~~~~~~d~~~l~~~~~~fD~I~~~   98 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR----------GVFVLKGTAENLPLKDESFDFALMV   98 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT----------TCEEEECBTTBCCSCTTCEEEEEEE
T ss_pred             CCCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc----------ccccccccccccccccccccccccc
Confidence            345689999999999987773      578999999999999862          6889999999999999999999999


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHH-HhhhccCCCCCHHHHHHHHHhCCCcEEEEEE--
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLR-ERILQNYNYLTEEEIEDLCTSCGLTNYTSKV--  321 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~--  321 (333)
                      ++|+|++|+..+++++.++|+|||.+++.+++..+........... .....+.+++|.+++.++|+++||+++++..  
T Consensus        99 ~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~~~  178 (208)
T d1vlma_          99 TTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTL  178 (208)
T ss_dssp             SCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             cccccccccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEEEe
Confidence            9999999999999999999999999999998764311111111111 1223667789999999999999999887542  


Q ss_pred             ------------------eCeEEEEEEeCC
Q 019957          322 ------------------QQSFIMFAAQKP  333 (333)
Q Consensus       322 ------------------~~~~~~~~a~kp  333 (333)
                                        .+.|+++.|+|.
T Consensus       179 ~~~p~~~~~~~~~~~~~~~~~f~~~~a~K~  208 (208)
T d1vlma_         179 FKHPSELSEIEPVKEGYGEGAFVVIRGTKK  208 (208)
T ss_dssp             CSCGGGCSSCCCCEESSSSSSEEEEEEECC
T ss_pred             cCCccchhhhhHHHcCCCCccEEEEEEEeC
Confidence                              336778888773

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=5.1e-24  Score=185.00  Aligned_cols=165  Identities=13%  Similarity=0.139  Sum_probs=136.5

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC
Q 019957          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (333)
                      |...+.++.+.+.+...++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|+++....|+  ..+++++.+|+
T Consensus        16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~gl--~~~v~~~~~d~   92 (245)
T d1nkva_          16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGV--SERVHFIHNDA   92 (245)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEESCC
T ss_pred             CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHhhc--cccchhhhhHH
Confidence            5566677888899998999999999999999999998875 35999999999999999999988885  66899999999


Q ss_pred             CCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHh--hhccCCCCCHHHHH
Q 019957          229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRER--ILQNYNYLTEEEIE  306 (333)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~t~~~l~  306 (333)
                      .++. .+++||+|++..+++|++|+..++++++++|||||++++.++.......   .......  ......+.+..++.
T Consensus        93 ~~~~-~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  168 (245)
T d1nkva_          93 AGYV-ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPA---TEEIAQACGVSSTSDFLTLPGLV  168 (245)
T ss_dssp             TTCC-CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCS---SHHHHHTTTCSCGGGSCCHHHHH
T ss_pred             hhcc-ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCC---hHHHHHHhccCCCcccCCHHHHH
Confidence            9874 5789999999999999999999999999999999999999876542211   1111111  12334577899999


Q ss_pred             HHHHhCCCcEEEEE
Q 019957          307 DLCTSCGLTNYTSK  320 (333)
Q Consensus       307 ~ll~~aGf~~v~~~  320 (333)
                      .+++++||+++...
T Consensus       169 ~~~~~aG~~~v~~~  182 (245)
T d1nkva_         169 GAFDDLGYDVVEMV  182 (245)
T ss_dssp             HHHHTTTBCCCEEE
T ss_pred             HHHHHcCCEEEEEE
Confidence            99999999987643

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.91  E-value=9.6e-23  Score=174.59  Aligned_cols=180  Identities=14%  Similarity=0.163  Sum_probs=134.6

Q ss_pred             CCcHHHHHHHHHhhc--ccCCCeEEEEcCCcCHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEE
Q 019957          149 PGPDEEFKMAQEYFK--SAQGGLLVDVSCGSGLFSRKFAKS--GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV  224 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~  224 (333)
                      |..+...+.+...+.  ..++.+|||||||+|..+..+++.  .++.+|+|+|+|+.|++.|++++...+.  ..++.+.
T Consensus        20 P~Y~~~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~--~~~~~~~   97 (225)
T d1im8a_          20 PGYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS--EIPVEIL   97 (225)
T ss_dssp             TTHHHHHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC--SSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc--cchhhhc
Confidence            444444444544433  246789999999999999999876  3567999999999999999999887654  5678888


Q ss_pred             EccCCCCCCCCCCcceEEeccccccCC--ChHHHHHHHHHhccCCcEEEEEEecccCCCc--chhhHHHHH---------
Q 019957          225 RADVCRLPFASGFVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTTFLRYTSST--SLTGRVLRE---------  291 (333)
Q Consensus       225 ~~d~~~lp~~~~~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--~~~~~~~~~---------  291 (333)
                      .+|+.+++  ...+|+|++..+++|++  |+.++|++++++|||||.+++.++.......  ......+..         
T Consensus        98 ~~d~~~~~--~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
T d1im8a_          98 CNDIRHVE--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSE  175 (225)
T ss_dssp             CSCTTTCC--CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGG
T ss_pred             cchhhccc--cccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCH
Confidence            88887776  45799999999999985  7789999999999999999999876542211  111111110         


Q ss_pred             --------hhhccCCCCCHHHHHHHHHhCCCcEEEEE-EeCeEEEEEEeC
Q 019957          292 --------RILQNYNYLTEEEIEDLCTSCGLTNYTSK-VQQSFIMFAAQK  332 (333)
Q Consensus       292 --------~~~~~~~~~t~~~l~~ll~~aGf~~v~~~-~~~~~~~~~a~k  332 (333)
                              ........++.+++..+|+++||+.++++ ....|..++|+|
T Consensus       176 ~~~~~~~~~~~~~~~~~s~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k  225 (225)
T d1im8a_         176 LEVSQKRTALENVMRTDSIETHKVRLKNVGFSQVELWFQCFNFGSMIAVK  225 (225)
T ss_dssp             STTHHHHHHHHHHCCCCCHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHhhcccCCCCHHHHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence                    00122456799999999999999998874 456678888877

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.90  E-value=2e-23  Score=178.86  Aligned_cols=147  Identities=13%  Similarity=0.124  Sum_probs=119.2

Q ss_pred             cccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEE
Q 019957          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (333)
                      ...++++|||||||+|.++..+++.+.  +|+|+|+|+.+++.|+++.       ..++.++.++++++++ +++||+|+
T Consensus        17 ~~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~giD~s~~~i~~a~~~~-------~~~~~~~~~~~~~~~~-~~~fD~I~   86 (225)
T d2p7ia1          17 PFFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRL-------KDGITYIHSRFEDAQL-PRRYDNIV   86 (225)
T ss_dssp             GGCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHS-------CSCEEEEESCGGGCCC-SSCEEEEE
T ss_pred             hhCCCCcEEEEeCCCcHHHHHHHHcCC--eEEEEeCcHHHhhhhhccc-------cccccccccccccccc-cccccccc
Confidence            334577999999999999999998876  8999999999999998864       3479999999988876 57999999


Q ss_pred             eccccccCCChHHHHHHHH-HhccCCcEEEEEEecccCCCcch---------hhHH-HHHhhhccCCCCCHHHHHHHHHh
Q 019957          243 AGAALHCWPSPSNAVAEIS-RILRSGGVFVGTTFLRYTSSTSL---------TGRV-LRERILQNYNYLTEEEIEDLCTS  311 (333)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~-r~LkpgG~l~i~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~t~~~l~~ll~~  311 (333)
                      +.++|||++||..+|.++. ++|||||.+++.+|+........         .... -......|.+.++.+++++++++
T Consensus        87 ~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~  166 (225)
T d2p7ia1          87 LTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASR  166 (225)
T ss_dssp             EESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred             ccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHH
Confidence            9999999999999999998 79999999999998754211000         0000 01122367889999999999999


Q ss_pred             CCCcEEEE
Q 019957          312 CGLTNYTS  319 (333)
Q Consensus       312 aGf~~v~~  319 (333)
                      +||++++.
T Consensus       167 ~Gf~i~~~  174 (225)
T d2p7ia1         167 AGLQVTYR  174 (225)
T ss_dssp             TTCEEEEE
T ss_pred             CCCEEEEE
Confidence            99998774

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.3e-23  Score=179.79  Aligned_cols=148  Identities=12%  Similarity=0.152  Sum_probs=122.4

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (333)
                      ..++.+|||||||+|.++..+...+ ..+|+|+|+|+.|++.|++++...+   ..++.++++|++++++++++||+|++
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~ak~~~~~~~---~~~~~f~~~d~~~~~~~~~~fD~I~~  133 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEG---KRVRNYFCCGLQDFTPEPDSYDVIWI  133 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGG---GGEEEEEECCGGGCCCCSSCEEEEEE
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhc-CCEEEEeecCHHHhhcccccccccc---cccccccccccccccccccccccccc
Confidence            4456799999999999999887665 3489999999999999999987765   56789999999999988999999999


Q ss_pred             ccccccCCChH--HHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957          244 GAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       244 ~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~  321 (333)
                      ..+++|++++.  +++++++++|||||.+++.++....... +       ....+...++.+++.++++++||++++...
T Consensus       134 ~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~  205 (222)
T d2ex4a1         134 QWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI-L-------DDVDSSVCRDLDVVRRIICSAGLSLLAEER  205 (222)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEE-E-------ETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred             ccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccc-c-------ccCCceeeCCHHHHHHHHHHcCCEEEEEEE
Confidence            99999998874  7999999999999999999876542111 0       111334556899999999999999998765


Q ss_pred             eC
Q 019957          322 QQ  323 (333)
Q Consensus       322 ~~  323 (333)
                      ..
T Consensus       206 q~  207 (222)
T d2ex4a1         206 QE  207 (222)
T ss_dssp             CC
T ss_pred             eC
Confidence            43

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.89  E-value=2.7e-23  Score=181.18  Aligned_cols=156  Identities=8%  Similarity=0.010  Sum_probs=124.1

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      +.+++.+...+..+|||+|||+|.++..++..+. .+|+++|+|+.+++.|++++..     .+++.++++|++++++++
T Consensus        83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~~-----~~~~~~~~~d~~~~~~~~  156 (254)
T d1xtpa_          83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAG-----MPVGKFILASMETATLPP  156 (254)
T ss_dssp             HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTT-----SSEEEEEESCGGGCCCCS
T ss_pred             HHHHhhCCCCCCCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhccccc-----cccceeEEccccccccCC
Confidence            3444555556678999999999999998776642 3899999999999999988754     456899999999999889


Q ss_pred             CCcceEEeccccccCCChH--HHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCC
Q 019957          236 GFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCG  313 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aG  313 (333)
                      ++||+|++..+++|++|+.  ++|++++++|||||.+++.++.......-+       ....+..+++.++++++++++|
T Consensus       157 ~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~-------d~~d~~~~rs~~~~~~l~~~aG  229 (254)
T d1xtpa_         157 NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLV-------DKEDSSLTRSDIHYKRLFNESG  229 (254)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEE-------ETTTTEEEBCHHHHHHHHHHHT
T ss_pred             CccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCccee-------cccCCceeCCHHHHHHHHHHcC
Confidence            9999999999999998874  789999999999999999887653211110       1112334578999999999999


Q ss_pred             CcEEEEEEeCe
Q 019957          314 LTNYTSKVQQS  324 (333)
Q Consensus       314 f~~v~~~~~~~  324 (333)
                      |++++...+..
T Consensus       230 f~ii~~~~q~~  240 (254)
T d1xtpa_         230 VRVVKEAFQEE  240 (254)
T ss_dssp             CCEEEEEECTT
T ss_pred             CEEEEEEeeCC
Confidence            99998766443

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.87  E-value=1.7e-21  Score=169.77  Aligned_cols=161  Identities=16%  Similarity=0.216  Sum_probs=124.5

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      +.+.+.+...+..+|||||||+|.++..+++++|..+++++|+ +.+++.+++++...++  ..++.++.+|+.+..  .
T Consensus        70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~--~~rv~~~~~D~~~~~--~  144 (253)
T d1tw3a2          70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL--SDRVDVVEGDFFEPL--P  144 (253)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC--TTTEEEEECCTTSCC--S
T ss_pred             HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhc--ccchhhccccchhhc--c
Confidence            4555566656678999999999999999999999999999998 6789999999988875  678999999986532  3


Q ss_pred             CCcceEEeccccccCCChH--HHHHHHHHhccCCcEEEEEEecccCCC-cchhhHHHHHh--hhccCCCCCHHHHHHHHH
Q 019957          236 GFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSS-TSLTGRVLRER--ILQNYNYLTEEEIEDLCT  310 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~t~~~l~~ll~  310 (333)
                      .+||+|++.++|||++++.  ++|++++++|||||+|++.+....... .......+.-.  .......+|.++++++++
T Consensus       145 ~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~  224 (253)
T d1tw3a2         145 RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAA  224 (253)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHH
T ss_pred             cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHH
Confidence            5799999999999998774  789999999999999999886543211 11111111111  112234578999999999


Q ss_pred             hCCCcEEEEEE
Q 019957          311 SCGLTNYTSKV  321 (333)
Q Consensus       311 ~aGf~~v~~~~  321 (333)
                      ++||+++++..
T Consensus       225 ~AGf~~~~v~~  235 (253)
T d1tw3a2         225 SAGLVVEEVRQ  235 (253)
T ss_dssp             HTTEEEEEEEE
T ss_pred             HCCCeEEEEEE
Confidence            99999887643

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.86  E-value=1.1e-20  Score=158.50  Aligned_cols=154  Identities=19%  Similarity=0.201  Sum_probs=118.7

Q ss_pred             cccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEE
Q 019957          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (333)
                      ...++++|||||||+|.++..+++++.  +|+|+|+|+.+++.++++....+   ..++.+...|+..+++ +++||+|+
T Consensus        27 ~~~~~grvLDiGcG~G~~~~~la~~g~--~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~d~~~~~~-~~~fD~I~  100 (198)
T d2i6ga1          27 KVVAPGRTLDLGCGNGRNSLYLAANGY--DVTAWDKNPASMANLERIKAAEG---LDNLQTDLVDLNTLTF-DGEYDFIL  100 (198)
T ss_dssp             TTSCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CTTEEEEECCTTTCCC-CCCEEEEE
T ss_pred             ccCCCCcEEEECCCCCHHHHHHHHHhh--hhccccCcHHHHHHHHHHhhhcc---ccchhhhheecccccc-cccccEEE
Confidence            333456999999999999999999987  99999999999999999988876   5689999999998876 67899999


Q ss_pred             eccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957          243 AGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       243 ~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                      +..+++|++++  .++++++.++|+|||++++.+.......        . ......+.++..++.+++  .||+++...
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~--------~-~~~~~~~~~~~~el~~~~--~~~~i~~~~  169 (198)
T d2i6ga1         101 STVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDF--------P-CTVGFPFAFKEGELRRYY--EGWDMLKYN  169 (198)
T ss_dssp             EESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC------------------CCCCBCTTHHHHHT--TTSEEEEEE
T ss_pred             EeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccC--------C-CCCCCCCccCHHHHHHHh--CCCeEEEee
Confidence            99999999765  4799999999999999999886543111        0 111234557778888887  577765421


Q ss_pred             E---------------eCeEEEEEEeCC
Q 019957          321 V---------------QQSFIMFAAQKP  333 (333)
Q Consensus       321 ~---------------~~~~~~~~a~kp  333 (333)
                      .               ...|..++++||
T Consensus       170 e~~~~~~~~~~~~~~~~~~~~~~varK~  197 (198)
T d2i6ga1         170 EDVGELHRTDENGNRIKLRFATMLARKT  197 (198)
T ss_dssp             EEECCC------------EEEEEEEECC
T ss_pred             eccceeeecCCCCcEeeEEEEEEEEEeC
Confidence            1               233567788886

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.85  E-value=7.3e-21  Score=167.57  Aligned_cols=162  Identities=15%  Similarity=0.182  Sum_probs=126.8

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      .++.+.+.+...++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|+++++..++  ...+.+...|..++  
T Consensus        40 k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l--~~~~~~~~~d~~~~--  114 (280)
T d2fk8a1          40 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDT--NRSRQVLLQGWEDF--  114 (280)
T ss_dssp             HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCC--SSCEEEEESCGGGC--
T ss_pred             HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhcc--ccchhhhhhhhhhh--
Confidence            34667777788899999999999999999998874 34999999999999999999999886  66788888887765  


Q ss_pred             CCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCc------ch------hhHHHHHhhhccCCC
Q 019957          234 ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSST------SL------TGRVLRERILQNYNY  299 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~------~~------~~~~~~~~~~~~~~~  299 (333)
                       +++||.|++..+++|+.+.  ..+++++.++|||||++++.+........      ..      ...++.....+....
T Consensus       115 -~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~l  193 (280)
T d2fk8a1         115 -AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRL  193 (280)
T ss_dssp             -CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCC
T ss_pred             -ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcc
Confidence             4689999999999999765  78999999999999999998765431110      00      001122222233456


Q ss_pred             CCHHHHHHHHHhCCCcEEEEEE
Q 019957          300 LTEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       300 ~t~~~l~~ll~~aGf~~v~~~~  321 (333)
                      .+.+++...++++||++.....
T Consensus       194 PS~~~l~~~~e~aGf~v~~~~~  215 (280)
T d2fk8a1         194 PSTEMMVEHGEKAGFTVPEPLS  215 (280)
T ss_dssp             CCHHHHHHHHHHTTCBCCCCEE
T ss_pred             cchHhhhhhHHhhccccceeee
Confidence            7899999999999999877543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.85  E-value=1.1e-20  Score=166.89  Aligned_cols=164  Identities=13%  Similarity=0.149  Sum_probs=121.7

Q ss_pred             HHHHHHhh-cccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957          155 FKMAQEYF-KSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (333)
Q Consensus       155 ~~~~~~~l-~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (333)
                      .+.+.+.+ ...++.+|||||||+|.++..+++..+ ..+|+|+|+|+.+++.|+++....+    .++.++.+|+.+++
T Consensus        15 l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~----~~~~f~~~d~~~~~   90 (281)
T d2gh1a1          15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP----YDSEFLEGDATEIE   90 (281)
T ss_dssp             HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS----SEEEEEESCTTTCC
T ss_pred             HHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc----cccccccccccccc
Confidence            34444433 345678999999999999999988754 3689999999999999999887754    37899999999988


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc---------CCCcch------hhHHHHHhhh-cc
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY---------TSSTSL------TGRVLRERIL-QN  296 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~---------~~~~~~------~~~~~~~~~~-~~  296 (333)
                      +. ++||+|++.++++|++||..+|+++.++|||||.+++.++...         ......      +...+..... ..
T Consensus        91 ~~-~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (281)
T d2gh1a1          91 LN-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNG  169 (281)
T ss_dssp             CS-SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTC
T ss_pred             cc-CCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcC
Confidence            75 5799999999999999999999999999999999999987531         000000      1111111111 11


Q ss_pred             CCCCCHHHHHHHHHhCCCcEEEEEEeC
Q 019957          297 YNYLTEEEIEDLCTSCGLTNYTSKVQQ  323 (333)
Q Consensus       297 ~~~~t~~~l~~ll~~aGf~~v~~~~~~  323 (333)
                      ....-..++..+++++||+.+++....
T Consensus       170 ~~~~i~~~l~~~l~eaGf~~i~~~~~~  196 (281)
T d2gh1a1         170 KDGNIGMKIPIYLSELGVKNIECRVSD  196 (281)
T ss_dssp             CCTTGGGTHHHHHHHTTCEEEEEEECC
T ss_pred             CCCCHHHHHHHHHHHcCCeEEEEEEec
Confidence            111223578899999999998865543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.85  E-value=5.3e-21  Score=163.04  Aligned_cols=106  Identities=26%  Similarity=0.426  Sum_probs=95.8

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (333)
                      +..+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+    ..+.++.+|+.++++++++||+|++..
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~~~--~v~giD~S~~~i~~ak~~~~~~~----~~~~~~~~d~~~l~~~~~~fD~I~~~~  110 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRE----SNVEFIVGDARKLSFEDKTFDYVIFID  110 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCCEEEECCTTSCCSCTTCEEEEEEES
T ss_pred             CCCEEEEECCCcchhhhhHhhhhc--ccccccccccchhhhhhhhcccc----ccccccccccccccccCcCceEEEEec
Confidence            467999999999999999998765  99999999999999999887753    467889999999999999999999999


Q ss_pred             ccccCC--ChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          246 ALHCWP--SPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       246 vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      +++|++  |+.++|+++.++|||||++++.+++.
T Consensus       111 ~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~~  144 (226)
T d1ve3a1         111 SIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL  144 (226)
T ss_dssp             CGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             chhhCChhHHHHHHHHHHHHcCcCcEEEEEEcCc
Confidence            999997  56789999999999999999987653

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.85  E-value=2.5e-20  Score=164.66  Aligned_cols=162  Identities=13%  Similarity=0.109  Sum_probs=128.2

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      ..+.+.+.+...++.+|||||||.|.++..+++.. +.+|+|+++|+..++.++++....++  ...+.+...|..   +
T Consensus        49 k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~~l--~~~v~~~~~d~~---~  122 (291)
T d1kpia_          49 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVDS--PRRKEVRIQGWE---E  122 (291)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHSCC--SSCEEEEECCGG---G
T ss_pred             HHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhhcc--chhhhhhhhccc---c
Confidence            35677788888899999999999999999998775 45999999999999999999999886  667888777764   3


Q ss_pred             CCCCcceEEeccccccCCCh---------HHHHHHHHHhccCCcEEEEEEecccCCC--------cch----hhHHHHHh
Q 019957          234 ASGFVDAVHAGAALHCWPSP---------SNAVAEISRILRSGGVFVGTTFLRYTSS--------TSL----TGRVLRER  292 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~---------~~~l~~~~r~LkpgG~l~i~~~~~~~~~--------~~~----~~~~~~~~  292 (333)
                      .+++||.|++..+++|+.++         ..+++++.++|||||++++.+.......        .+.    ...++...
T Consensus       123 ~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~ky  202 (291)
T d1kpia_         123 FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTE  202 (291)
T ss_dssp             CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred             cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHH
Confidence            46899999999999999874         6899999999999999999987653211        110    01122222


Q ss_pred             hhccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957          293 ILQNYNYLTEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       293 ~~~~~~~~t~~~l~~ll~~aGf~~v~~~~  321 (333)
                      .-+.....+..++..+++++||++.....
T Consensus       203 iFpgg~lps~~~~~~~~e~~gl~v~~~~~  231 (291)
T d1kpia_         203 IFPGGRLPRISQVDYYSSNAGWKVERYHR  231 (291)
T ss_dssp             TCTTCCCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred             hcCCCCCCCHHHHHhhhcccccccceeee
Confidence            22444567899999999999999887544

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=7.4e-21  Score=165.04  Aligned_cols=108  Identities=25%  Similarity=0.409  Sum_probs=93.0

Q ss_pred             hcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceE
Q 019957          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (333)
                      ....+..+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...+    .++.++++|+++++++ ++||+|
T Consensus        37 ~~~~~~~~iLDiGcGtG~~~~~l~~~~~--~v~gvD~s~~mi~~a~~~~~~~~----~~i~~~~~d~~~l~~~-~~fD~I  109 (251)
T d1wzna1          37 DAKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKERN----LKIEFLQGDVLEIAFK-NEFDAV  109 (251)
T ss_dssp             TCSSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT----CCCEEEESCGGGCCCC-SCEEEE
T ss_pred             hcCCCCCEEEEeCCCCCccchhhcccce--EEEEEeecccccccccccccccc----ccchheehhhhhcccc-cccchH
Confidence            3445667999999999999999999876  89999999999999999988764    3799999999999976 589999


Q ss_pred             Eec-cccccCC--ChHHHHHHHHHhccCCcEEEEEEec
Q 019957          242 HAG-AALHCWP--SPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       242 ~~~-~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ++. .+++|+.  +...+|++++++|||||++++..++
T Consensus       110 ~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         110 TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             EECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence            986 6778874  4568999999999999999986544

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.84  E-value=6.4e-20  Score=161.50  Aligned_cols=162  Identities=16%  Similarity=0.178  Sum_probs=129.3

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      ..+.+.+.+...++.+|||||||.|.++..+++.. +++|+|+++|+..++.|+++..+.++  ..++.+..+|...++ 
T Consensus        50 k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~--~~~v~~~~~d~~~~~-  125 (285)
T d1kpga_          50 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSEN--LRSKRVLLAGWEQFD-  125 (285)
T ss_dssp             HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCC--CSCEEEEESCGGGCC-
T ss_pred             HHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhh--hhhhHHHHhhhhccc-
Confidence            44677778888899999999999999999988875 46999999999999999999988886  789999999988775 


Q ss_pred             CCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCC------C--cch----hhHHHHHhhhccCCC
Q 019957          234 ASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTS------S--TSL----TGRVLRERILQNYNY  299 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~------~--~~~----~~~~~~~~~~~~~~~  299 (333)
                        ++||.|++..+++|+.+.  ..+++++.++|||||++++.+......      .  .+.    ...++.....+....
T Consensus       126 --~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~l  203 (285)
T d1kpga_         126 --EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRL  203 (285)
T ss_dssp             --CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCC
T ss_pred             --ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCC
Confidence              689999999999999644  789999999999999999988763210      0  001    011122222234456


Q ss_pred             CCHHHHHHHHHhCCCcEEEEEE
Q 019957          300 LTEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       300 ~t~~~l~~ll~~aGf~~v~~~~  321 (333)
                      .+..++..+++++||++++...
T Consensus       204 Psl~~~~~~~e~agf~v~~~~~  225 (285)
T d1kpga_         204 PSIPMVQECASANGFTVTRVQS  225 (285)
T ss_dssp             CCHHHHHHHHHTTTCEEEEEEE
T ss_pred             CChhhHHHHHHHhchhhccccc
Confidence            7899999999999999988644

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.84  E-value=6.9e-21  Score=165.01  Aligned_cols=159  Identities=17%  Similarity=0.211  Sum_probs=116.5

Q ss_pred             HHHHHhhcc--cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          156 KMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       156 ~~~~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      +.+.+.+..  .++.+|||||||+|.++..+++.+.  +++|+|+|+.|++.|+++....+    .++.++++|+.++++
T Consensus        25 ~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~~~----~~v~~~~~d~~~~~~   98 (246)
T d1y8ca_          25 DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQG----LKPRLACQDISNLNI   98 (246)
T ss_dssp             HHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTT----CCCEEECCCGGGCCC
T ss_pred             HHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhccccccccC----ccceeeccchhhhcc
Confidence            444444432  3457999999999999999999986  99999999999999999887764    379999999998876


Q ss_pred             CCCCcceEEec-cccccCCCh---HHHHHHHHHhccCCcEEEEEEeccc---C--CCcch---------h-hHHHH----
Q 019957          234 ASGFVDAVHAG-AALHCWPSP---SNAVAEISRILRSGGVFVGTTFLRY---T--SSTSL---------T-GRVLR----  290 (333)
Q Consensus       234 ~~~~fD~V~~~-~vl~h~~d~---~~~l~~~~r~LkpgG~l~i~~~~~~---~--~~~~~---------~-~~~~~----  290 (333)
                       +++||+|+|. .+++|+.++   .++|++++++|||||.|++...+..   .  ....+         . ...+.    
T Consensus        99 -~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (246)
T d1y8ca_          99 -NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLV  177 (246)
T ss_dssp             -SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEE
T ss_pred             -cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhhhcccCceeecCCcEEEEEeeccCCcce
Confidence             4689999975 788888755   5689999999999999998654331   0  00000         0 00000    


Q ss_pred             --------------Hhh--hccCCCCCHHHHHHHHHhCCCcEEEEEE
Q 019957          291 --------------ERI--LQNYNYLTEEEIEDLCTSCGLTNYTSKV  321 (333)
Q Consensus       291 --------------~~~--~~~~~~~t~~~l~~ll~~aGf~~v~~~~  321 (333)
                                    ...  ....+.++.++++++++++||+.++...
T Consensus       178 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~l~~~Gf~~i~~~~  224 (246)
T d1y8ca_         178 SMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVD  224 (246)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             eEEEEEEEecCCceEEEEEEEEEEcCCHHHHHHHHHHCCCEEEEEEe
Confidence                          000  0122467999999999999999887643

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.83  E-value=8.3e-20  Score=159.02  Aligned_cols=162  Identities=15%  Similarity=0.184  Sum_probs=123.4

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFAS  235 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~  235 (333)
                      ..+.+.+...+..+|||||||+|.++..+++++|..+++++|+ +.+++.+++++...++  ..++.++.+|+.. +. .
T Consensus        71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~--~~ri~~~~~d~~~-~~-p  145 (256)
T d1qzza2          71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL--ADRVTVAEGDFFK-PL-P  145 (256)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC--TTTEEEEECCTTS-CC-S
T ss_pred             HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCC--cceeeeeeeeccc-cc-c
Confidence            3444445545667999999999999999999999999999997 7889999999988775  6789999999865 33 3


Q ss_pred             CCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccC--CCcchhhHHHHHh--hhccCCCCCHHHHHHHH
Q 019957          236 GFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYT--SSTSLTGRVLRER--ILQNYNYLTEEEIEDLC  309 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~t~~~l~~ll  309 (333)
                      .+||+|++.++|||+++.  .++|++++++|||||+|+|.+.....  ...+.....+.-.  ........|.++|++++
T Consensus       146 ~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll  225 (256)
T d1qzza2         146 VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLA  225 (256)
T ss_dssp             CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHH
T ss_pred             ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHH
Confidence            469999999999999876  47799999999999999998865321  1111111111111  11234557999999999


Q ss_pred             HhCCCcEEEEEEe
Q 019957          310 TSCGLTNYTSKVQ  322 (333)
Q Consensus       310 ~~aGf~~v~~~~~  322 (333)
                      +++||+++++...
T Consensus       226 ~~AGf~~~~~~~~  238 (256)
T d1qzza2         226 GSAGLALASERTS  238 (256)
T ss_dssp             HTTTEEEEEEEEE
T ss_pred             HHCCCceeEEEEe
Confidence            9999999987653

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=2.6e-20  Score=160.80  Aligned_cols=101  Identities=29%  Similarity=0.319  Sum_probs=90.3

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec-
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG-  244 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~-  244 (333)
                      ++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|+++..         ..++.+|++++++++++||+|++. 
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~~---------~~~~~~~~~~l~~~~~~fD~ii~~~  110 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGV---------KNVVEAKAEDLPFPSGAFEAVLALG  110 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHTC---------SCEEECCTTSCCSCTTCEEEEEECS
T ss_pred             CCCEEEEECCCCchhcccccccce--EEEEeecccccccccccccc---------cccccccccccccccccccceeeec
Confidence            467999999999999999998865  99999999999999998521         236789999999999999999975 


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      .++||++|+.++|+++.++|||||++++.+++.
T Consensus       111 ~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~~  143 (246)
T d2avna1         111 DVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF  143 (246)
T ss_dssp             SHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             chhhhhhhHHHHHHHHHhhcCcCcEEEEEECCH
Confidence            689999999999999999999999999998764

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6.1e-20  Score=162.07  Aligned_cols=152  Identities=9%  Similarity=0.034  Sum_probs=110.7

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHh----CC--CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeE--EEEccCCC------C
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKS----GT--YSGVVALDFSENMLRQCYDFIKQDNTILTSNLA--LVRADVCR------L  231 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~----~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~--~~~~d~~~------l  231 (333)
                      +..+|||||||+|.++..+++.    ++  ...++|+|+|+.|++.+++++.....  ..++.  +...+++.      .
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  117 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN--LENVKFAWHKETSSEYQSRMLE  117 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCS--CTTEEEEEECSCHHHHHHHHTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccc--cccccccchhhhhhhhcchhcc
Confidence            3447999999999987776553    32  24689999999999999998765331  23343  34444332      2


Q ss_pred             CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH-hhhccCCCCCHHHHHHHHH
Q 019957          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-RILQNYNYLTEEEIEDLCT  310 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~l~~ll~  310 (333)
                      +..+++||+|++.++|||++|+..+|++++++|+|||.+++..+.........+...+.. ..+.+..+++.+++..+|+
T Consensus       118 ~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~  197 (280)
T d1jqea_         118 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLD  197 (280)
T ss_dssp             SSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTSCCCCHHHHHHHHH
T ss_pred             cCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCcccccCCHHHHHHHHH
Confidence            456789999999999999999999999999999999999999876543222111111111 1235566889999999999


Q ss_pred             hCCCcEEEE
Q 019957          311 SCGLTNYTS  319 (333)
Q Consensus       311 ~aGf~~v~~  319 (333)
                      +.||+.+..
T Consensus       198 ~~G~~~~~~  206 (280)
T d1jqea_         198 NLGLKYECY  206 (280)
T ss_dssp             HHTCCEEEE
T ss_pred             HCCCceEEE
Confidence            999986653

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.80  E-value=1.5e-19  Score=157.07  Aligned_cols=153  Identities=18%  Similarity=0.179  Sum_probs=114.2

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC-CCCCcceEEe
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF-ASGFVDAVHA  243 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~V~~  243 (333)
                      .++.+|||||||+|..+..+++.+ ..+|+|+|+|+.|++.|+++....+.  ..++.+.++|+...++ .+++||+|++
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~~~--~~~v~f~~~D~~~~~~~~~~~fD~V~~   99 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKR--RFKVFFRAQDSYGRHMDLGKEFDVISS   99 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCC--SSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhcCC--CcceEEEEcchhhhcccccccceEEEE
Confidence            457899999999999999998876 34899999999999999998877653  5579999999977665 4678999999


Q ss_pred             ccccccCCCh----HHHHHHHHHhccCCcEEEEEEecccCC----------------------Ccchh-hHHH----HHh
Q 019957          244 GAALHCWPSP----SNAVAEISRILRSGGVFVGTTFLRYTS----------------------STSLT-GRVL----RER  292 (333)
Q Consensus       244 ~~vl~h~~d~----~~~l~~~~r~LkpgG~l~i~~~~~~~~----------------------~~~~~-~~~~----~~~  292 (333)
                      ..++||+.++    ..+++++.++|||||++++.+++...-                      ..+.. ...+    ...
T Consensus       100 ~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~  179 (252)
T d1ri5a_         100 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDS  179 (252)
T ss_dssp             ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTS
T ss_pred             cceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHHhcccCCceEEEecccccCCcCcCceEEEEEcccc
Confidence            9999998543    478999999999999999988763200                      00000 0000    000


Q ss_pred             -hhccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957          293 -ILQNYNYLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       293 -~~~~~~~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                       .....+....+.+.++++++||+.++..
T Consensus       180 ~~~~~E~l~~~~~l~~~~~~~g~~lv~~~  208 (252)
T d1ri5a_         180 VNNCIEYFVDFTRMVDGFKRLGLSLVERK  208 (252)
T ss_dssp             CSSEEEECCCHHHHHHHHHTTTEEEEEEE
T ss_pred             cccCcccccCHHHHHHHHHHcCCEEEEEe
Confidence             0011124567899999999999988754

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=3.2e-19  Score=154.30  Aligned_cols=136  Identities=15%  Similarity=0.221  Sum_probs=114.0

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++.+.+++    +..++.+|+... +++++||+|+++
T Consensus       119 ~~g~~VLDiGcGsG~l~i~aa~~g~--~V~gvDis~~av~~A~~na~~n~~----~~~~~~~d~~~~-~~~~~fD~V~an  191 (254)
T d2nxca1         119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGV----RPRFLEGSLEAA-LPFGPFDLLVAN  191 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTC----CCEEEESCHHHH-GGGCCEEEEEEE
T ss_pred             CccCEEEEcccchhHHHHHHHhcCC--EEEEEECChHHHHHHHHHHHHcCC----ceeEEecccccc-ccccccchhhhc
Confidence            4688999999999999999998775  899999999999999999988764    567888887652 446799999997


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEEEeCe
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSKVQQS  324 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~~~~~  324 (333)
                      ...++   ...++.++.++|||||+++++.....                      ..+++.+.++++||++++....+.
T Consensus       192 i~~~~---l~~l~~~~~~~LkpGG~lilSgil~~----------------------~~~~v~~~~~~~Gf~~~~~~~~~~  246 (254)
T d2nxca1         192 LYAEL---HAALAPRYREALVPGGRALLTGILKD----------------------RAPLVREAMAGAGFRPLEEAAEGE  246 (254)
T ss_dssp             CCHHH---HHHHHHHHHHHEEEEEEEEEEEEEGG----------------------GHHHHHHHHHHTTCEEEEEEEETT
T ss_pred             ccccc---HHHHHHHHHHhcCCCcEEEEEecchh----------------------hHHHHHHHHHHCCCEEEEEEEECC
Confidence            65554   45678999999999999999765321                      246888999999999999999999


Q ss_pred             EEEEEEeC
Q 019957          325 FIMFAAQK  332 (333)
Q Consensus       325 ~~~~~a~k  332 (333)
                      |++++.+|
T Consensus       247 Wv~l~~~r  254 (254)
T d2nxca1         247 WVLLAYGR  254 (254)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEeC
Confidence            98888776

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.8e-20  Score=163.11  Aligned_cols=148  Identities=20%  Similarity=0.276  Sum_probs=108.4

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCC-------------------------
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTS-------------------------  219 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~-------------------------  219 (333)
                      .++.+|||||||+|.++..++..+ ..+|+|+|+|+.+++.|+++++..+.....                         
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            356789999999999887776654 347999999999999999988754320000                         


Q ss_pred             -Ce-EEEEccC----CCCCCCCCCcceEEeccccccCC----ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHH
Q 019957          220 -NL-ALVRADV----CRLPFASGFVDAVHAGAALHCWP----SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVL  289 (333)
Q Consensus       220 -~i-~~~~~d~----~~lp~~~~~fD~V~~~~vl~h~~----d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~  289 (333)
                       .+ .....+.    ...++.+++||+|++..+|||+.    ++..+++++.++|||||.+++.++........      
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~------  202 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMV------  202 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEE------
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccccccee------
Confidence             00 1111111    22356688999999999999996    45678999999999999999998865421111      


Q ss_pred             HHhhhccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957          290 RERILQNYNYLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       290 ~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                       .....+..+++.++++++|+++||++++..
T Consensus       203 -~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~  232 (257)
T d2a14a1         203 -GKREFSCVALEKGEVEQAVLDAGFDIEQLL  232 (257)
T ss_dssp             -TTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             -ccccccccCCCHHHHHHHHHHCCCEEEEEE
Confidence             112245678999999999999999988763

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.80  E-value=6.9e-19  Score=150.24  Aligned_cols=145  Identities=11%  Similarity=0.080  Sum_probs=116.7

Q ss_pred             hcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-CCCCCcce
Q 019957          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-FASGFVDA  240 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~  240 (333)
                      +...++.+|||+|||+|.++..+++.++...|+|+|+|+.+++.++++...     .+++..+.+|....+ +.+..+|+
T Consensus        70 l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~-----~~ni~~i~~d~~~~~~~~~~~~~v  144 (230)
T d1g8sa_          70 MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-----RENIIPILGDANKPQEYANIVEKV  144 (230)
T ss_dssp             CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-----CTTEEEEECCTTCGGGGTTTCCCE
T ss_pred             CCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhh-----hcccceEEEeeccCccccccccee
Confidence            456789999999999999999999998888999999999999999988765     567888888886643 55678899


Q ss_pred             EEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                      +++...++|..++..+++++++.|||||.+++............ ..            ...+++.+.|+++||++++..
T Consensus       145 ~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~-~~------------~~~~e~~~~L~~aGF~ive~i  211 (230)
T d1g8sa_         145 DVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKD-PK------------EIFKEQKEILEAGGFKIVDEV  211 (230)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSC-HH------------HHHHHHHHHHHHHTEEEEEEE
T ss_pred             EEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCC-HH------------HHHHHHHHHHHHcCCEEEEEe
Confidence            88888999999999999999999999999999876543211111 00            113578899999999999876


Q ss_pred             EeCe
Q 019957          321 VQQS  324 (333)
Q Consensus       321 ~~~~  324 (333)
                      ...+
T Consensus       212 dL~p  215 (230)
T d1g8sa_         212 DIEP  215 (230)
T ss_dssp             ECTT
T ss_pred             cCCC
Confidence            5433

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8.4e-19  Score=150.13  Aligned_cols=171  Identities=16%  Similarity=0.141  Sum_probs=127.4

Q ss_pred             HHHHhhHHhhcccCCC-CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH
Q 019957          133 FLYERGWRQNFNRSGF-PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK  211 (333)
Q Consensus       133 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~  211 (333)
                      ..+++.|++.-..... .....+.+.+.+.+...++.+|||+|||+|..+..|++.|.  +|+|+|+|+.+++.++++..
T Consensus        11 e~W~~~~~~~~~~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~--~V~gvD~S~~ai~~a~~~~~   88 (229)
T d2bzga1          11 EEWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH--SVVGVEISELGIQEFFTEQN   88 (229)
T ss_dssp             HHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTT
T ss_pred             HHHHHHHccCCCCCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhh
Confidence            4456666553222111 23344556777777777888999999999999999999987  99999999999999998765


Q ss_pred             hcCc--------------CCCCCeEEEEccCCCCC-CCCCCcceEEeccccccCC--ChHHHHHHHHHhccCCcEEEEEE
Q 019957          212 QDNT--------------ILTSNLALVRADVCRLP-FASGFVDAVHAGAALHCWP--SPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       212 ~~~~--------------~~~~~i~~~~~d~~~lp-~~~~~fD~V~~~~vl~h~~--d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      ..+.              ....+++++++|+..++ ...+.||+|+...+++|++  +....++++.++|||||.+++.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1          89 LSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             CCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence            3210              01357899999998874 5578999999999999995  34688999999999999999888


Q ss_pred             ecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEE
Q 019957          275 FLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNY  317 (333)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v  317 (333)
                      .......           ........+++++..+++. +|++.
T Consensus       169 ~~~~~~~-----------~~gpp~~~~~~el~~lf~~-~~~i~  199 (229)
T d2bzga1         169 LSYDPTK-----------HPGPPFYVPHAEIERLFGK-ICNIR  199 (229)
T ss_dssp             EECCTTT-----------CCCSSCCCCHHHHHHHHTT-TEEEE
T ss_pred             cccCCCC-----------CCCCCCCCCHHHHHHHhcC-CCEEE
Confidence            7653211           1122346799999999965 66653

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.79  E-value=1.9e-18  Score=143.05  Aligned_cols=120  Identities=18%  Similarity=0.192  Sum_probs=105.1

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC
Q 019957          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (333)
                      +...+....+...+.+.++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.|+++++..++  ..+++++++|+
T Consensus        16 ~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~--~V~avD~~~~~l~~a~~n~~~~gl--~~~v~~~~gda   91 (186)
T d1l3ia_          16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVR--RVYAIDRNPEAISTTEMNLQRHGL--GDNVTLMEGDA   91 (186)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTC--CTTEEEEESCH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccce--EEEEecCCHHHHHHHHHHHHHcCC--CcceEEEECch
Confidence            45566667888889999999999999999999999988765  999999999999999999999886  57999999999


Q ss_pred             CCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      .+.++....||+|++....+|   ...+++++.+.|||||++++...
T Consensus        92 ~~~~~~~~~~D~v~~~~~~~~---~~~~~~~~~~~LkpgG~lvi~~~  135 (186)
T d1l3ia_          92 PEALCKIPDIDIAVVGGSGGE---LQEILRIIKDKLKPGGRIIVTAI  135 (186)
T ss_dssp             HHHHTTSCCEEEEEESCCTTC---HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hhcccccCCcCEEEEeCcccc---chHHHHHHHHHhCcCCEEEEEee
Confidence            887777789999999876654   56789999999999999988764

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.78  E-value=3e-18  Score=142.83  Aligned_cols=153  Identities=12%  Similarity=0.165  Sum_probs=117.6

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      ..+.+.+.+...++.+|||+|||+|.++..+++.++  +++++|+|+.+++.++++++.+++. ..++.++.+|+.+ ++
T Consensus        40 ~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~-~~~i~~~~~d~~~-~~  115 (194)
T d1dusa_          40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLD-NYDIRVVHSDLYE-NV  115 (194)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCT-TSCEEEEECSTTT-TC
T ss_pred             HHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCc-cceEEEEEcchhh-hh
Confidence            346677778888889999999999999999998877  9999999999999999999887752 3468999999876 45


Q ss_pred             CCCCcceEEeccccccCCCh-HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhC
Q 019957          234 ASGFVDAVHAGAALHCWPSP-SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC  312 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~-~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~a  312 (333)
                      ++++||+|++..++++..+. ..+++++.++|||||.+++......                      ..+.+...+++.
T Consensus       116 ~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~----------------------~~~~~~~~l~~~  173 (194)
T d1dusa_         116 KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ----------------------GAKSLAKYMKDV  173 (194)
T ss_dssp             TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTH----------------------HHHHHHHHHHHH
T ss_pred             ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeCcC----------------------CHHHHHHHHHHh
Confidence            67899999999988876654 6789999999999999988654321                      012333344433


Q ss_pred             CCcEEEEEEeCeEEEEEEeC
Q 019957          313 GLTNYTSKVQQSFIMFAAQK  332 (333)
Q Consensus       313 Gf~~v~~~~~~~~~~~~a~k  332 (333)
                      ...+........|.++.++|
T Consensus       174 f~~~~~~~~~~gf~vl~a~K  193 (194)
T d1dusa_         174 FGNVETVTIKGGYRVLKSKK  193 (194)
T ss_dssp             HSCCEEEEEETTEEEEEEEC
T ss_pred             CCcEEEEEecCCcEEEEEEE
Confidence            22333445667788888776

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.77  E-value=1.8e-18  Score=143.90  Aligned_cols=146  Identities=12%  Similarity=0.080  Sum_probs=112.0

Q ss_pred             HHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC---------CCCCeEEEEccCC
Q 019957          159 QEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---------LTSNLALVRADVC  229 (333)
Q Consensus       159 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~---------~~~~i~~~~~d~~  229 (333)
                      ...+...++.+|||+|||+|.++..|+++|.  +|+|+|+|+.|++.|+++.+..+..         ....+.++++|+.
T Consensus        13 ~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   90 (201)
T d1pjza_          13 WSSLNVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF   90 (201)
T ss_dssp             HHHHCCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred             HHHcCCCCCCEEEEecCcCCHHHHHHHHcCC--ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccc
Confidence            3346677889999999999999999999987  9999999999999999987653210         1245678999998


Q ss_pred             CCC-CCCCCcceEEeccccccCCC--hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHH
Q 019957          230 RLP-FASGFVDAVHAGAALHCWPS--PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIE  306 (333)
Q Consensus       230 ~lp-~~~~~fD~V~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~  306 (333)
                      .++ ....+||+|++..+++|+.+  ....++++.++|||||.+++..........           .......++++++
T Consensus        91 ~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~-----------~~p~~~~~~~el~  159 (201)
T d1pjza_          91 ALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALL-----------EGPPFSVPQTWLH  159 (201)
T ss_dssp             SSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSS-----------SSCCCCCCHHHHH
T ss_pred             ccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccC-----------CCccccCCHHHHH
Confidence            876 33568999999999999975  468899999999999999887765532111           1223456788888


Q ss_pred             HHHHhCCCcEEE
Q 019957          307 DLCTSCGLTNYT  318 (333)
Q Consensus       307 ~ll~~aGf~~v~  318 (333)
                      +++. .+|++..
T Consensus       160 ~l~~-~~~~i~~  170 (201)
T d1pjza_         160 RVMS-GNWEVTK  170 (201)
T ss_dssp             HTSC-SSEEEEE
T ss_pred             HHhC-CCcEEEE
Confidence            7774 5666543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.76  E-value=3.7e-18  Score=147.82  Aligned_cols=132  Identities=16%  Similarity=0.159  Sum_probs=112.5

Q ss_pred             hhcccCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCC
Q 019957          141 QNFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTS  219 (333)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~  219 (333)
                      ..+.............++...+...|+.+|||+|||+|.++..|++. ++..+|+++|+++++++.|+++++........
T Consensus        71 ~~~~r~tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~  150 (264)
T d1i9ga_          71 MSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPD  150 (264)
T ss_dssp             TTSCSCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCT
T ss_pred             hhccCCccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCc
Confidence            34444444555667788999999999999999999999999999987 78889999999999999999988764221257


Q ss_pred             CeEEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          220 NLALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       220 ~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      ++.++.+|+.+.++++++||.|++     |+++|..++.++.++|||||++++..|+.
T Consensus       151 nv~~~~~d~~~~~~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~i  203 (264)
T d1i9ga_         151 NWRLVVSDLADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATV  203 (264)
T ss_dssp             TEEEECSCGGGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             eEEEEecccccccccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCcc
Confidence            899999999988888999999975     78999999999999999999999988654

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.8e-18  Score=151.08  Aligned_cols=148  Identities=18%  Similarity=0.193  Sum_probs=105.1

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCC---------------------------
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTIL---------------------------  217 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~---------------------------  217 (333)
                      ..+.+|||||||+|.+....+... ..+|+|+|+|+.|++.++++++......                           
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  131 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence            457899999999997765444333 2389999999999999998775432100                           


Q ss_pred             CCCeEEEEccCCC------CCCCCCCcceEEeccccccCC----ChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhH
Q 019957          218 TSNLALVRADVCR------LPFASGFVDAVHAGAALHCWP----SPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR  287 (333)
Q Consensus       218 ~~~i~~~~~d~~~------lp~~~~~fD~V~~~~vl~h~~----d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~  287 (333)
                      .........|+..      .+...++||+|++..+|||+.    +..++|+++.++|||||+|++.++........    
T Consensus       132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~----  207 (263)
T d2g72a1         132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLA----  207 (263)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEE----
T ss_pred             hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCccccc----
Confidence            0011234455532      224456899999999999985    45789999999999999999988765321110    


Q ss_pred             HHHHhhhccCCCCCHHHHHHHHHhCCCcEEEEE
Q 019957          288 VLRERILQNYNYLTEEEIEDLCTSCGLTNYTSK  320 (333)
Q Consensus       288 ~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~~  320 (333)
                         ....-...++++++++++++++||++++..
T Consensus       208 ---~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~  237 (263)
T d2g72a1         208 ---GEARLTVVPVSEEEVREALVRSGYKVRDLR  237 (263)
T ss_dssp             ---TTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             ---CCcccccCCCCHHHHHHHHHHCCCeEEEEE
Confidence               111123457899999999999999987653

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.73  E-value=1.1e-17  Score=143.96  Aligned_cols=135  Identities=19%  Similarity=0.192  Sum_probs=106.6

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (333)
                      ...++...+...++.+|||+|||+|.++..+++. ++..+|+++|+++.+++.|+++++..+.  ..++.+..+|+.+. 
T Consensus        73 D~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~--~~nv~~~~~Di~~~-  149 (250)
T d1yb2a1          73 DASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD--IGNVRTSRSDIADF-  149 (250)
T ss_dssp             --------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC--CTTEEEECSCTTTC-
T ss_pred             HHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC--CCceEEEEeeeecc-
Confidence            3466777888899999999999999999999986 6777999999999999999999988653  67899999999875 


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhC
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSC  312 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~a  312 (333)
                      +.++.||.|++     ++++|..++.++.++|||||+|++..|+..         .             .+.+.+.+++.
T Consensus       150 ~~~~~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~i~---------Q-------------v~~~~~~l~~~  202 (250)
T d1yb2a1         150 ISDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFD---------Q-------------SEKTVLSLSAS  202 (250)
T ss_dssp             CCSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHH---------H-------------HHHHHHHSGGG
T ss_pred             cccceeeeeee-----cCCchHHHHHHHHHhcCCCceEEEEeCCcC---------h-------------HHHHHHHHHHC
Confidence            35779999985     578999999999999999999998776431         0             13455667788


Q ss_pred             CCcEEE
Q 019957          313 GLTNYT  318 (333)
Q Consensus       313 Gf~~v~  318 (333)
                      ||..++
T Consensus       203 gf~~i~  208 (250)
T d1yb2a1         203 GMHHLE  208 (250)
T ss_dssp             TEEEEE
T ss_pred             CCceeE
Confidence            997654

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.73  E-value=3.3e-17  Score=137.77  Aligned_cols=110  Identities=15%  Similarity=0.099  Sum_probs=92.4

Q ss_pred             hcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceE
Q 019957          162 FKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAV  241 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V  241 (333)
                      +...|+.+|||+|||+|..+..+++..+..+|+|+|+|+.+++.++++.+.     ..++.++.+|....+.....+|.+
T Consensus        52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~-----~~ni~~i~~d~~~~~~~~~~~~~v  126 (209)
T d1nt2a_          52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-----RNNIIPLLFDASKPWKYSGIVEKV  126 (209)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-----CSSEEEECSCTTCGGGTTTTCCCE
T ss_pred             CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc-----cCCceEEEeeccCccccccccceE
Confidence            456789999999999999999999987777999999999999999998877     458999999998765444455444


Q ss_pred             E-eccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          242 H-AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       242 ~-~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      . ..+.+.|..++..+++++.++|||||.+++.+..
T Consensus       127 d~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  162 (209)
T d1nt2a_         127 DLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKA  162 (209)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             EEEEecccChhhHHHHHHHHHHHhccCCeEEEEEEc
Confidence            3 3456778888899999999999999999998754

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=9.2e-17  Score=142.25  Aligned_cols=122  Identities=21%  Similarity=0.248  Sum_probs=93.1

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC-CCCCeEEEEccCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI-LTSNLALVRADVCR  230 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~-~~~~i~~~~~d~~~  230 (333)
                      ....+.+.+.+...++.+|||+|||+|.++..|++.+.  +|+|+|+|+.|++.|+++....+.. ......+..+++..
T Consensus        42 ~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~--~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~  119 (292)
T d1xvaa_          42 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT  119 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred             HHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCC--eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccc
Confidence            33446667777777778999999999999999999875  9999999999999999987664321 01133455555533


Q ss_pred             ----CCCCCCCcceEEec-cccccCCCh-------HHHHHHHHHhccCCcEEEEEEec
Q 019957          231 ----LPFASGFVDAVHAG-AALHCWPSP-------SNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       231 ----lp~~~~~fD~V~~~-~vl~h~~d~-------~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                          +| ..++||+|++. .+++|++++       ..+|+++.++|||||+|++...+
T Consensus       120 ~~~~~~-~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  176 (292)
T d1xvaa_         120 LDKDVP-AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  176 (292)
T ss_dssp             HHHHSC-CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             cccccC-CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence                23 24689999874 689999764       46999999999999999997654

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.6e-18  Score=148.35  Aligned_cols=149  Identities=12%  Similarity=0.207  Sum_probs=105.4

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC--CCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPF  233 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~--lp~  233 (333)
                      +.+...+. .++.+|||||||+|..+..+++..+ .+++|+|+|+.+++.|+++....    ..++.++.+++..  .++
T Consensus        44 ~~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~  117 (229)
T d1zx0a1          44 HALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAPTL  117 (229)
T ss_dssp             HHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGGGS
T ss_pred             HHHHHhhc-cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhc----cccccccccccccccccc
Confidence            34444444 3577999999999999999998753 48999999999999999988765    3467777777643  245


Q ss_pred             CCCCcceEE-----eccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHH
Q 019957          234 ASGFVDAVH-----AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDL  308 (333)
Q Consensus       234 ~~~~fD~V~-----~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~l  308 (333)
                      ++++||.|+     +...++|+.++..++++++|+|||||+|++.+....       ....... ..+......+.+...
T Consensus       118 ~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~  189 (229)
T d1zx0a1         118 PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSW-------GELMKSK-YSDITIMFEETQVPA  189 (229)
T ss_dssp             CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHH-------HHHTTTT-CSCHHHHHHHHTHHH
T ss_pred             ccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEecCCc-------chhhhhh-hhhcchhhhhHHHHH
Confidence            678888887     578889999999999999999999999987442211       0000000 001111123456677


Q ss_pred             HHhCCCcEEE
Q 019957          309 CTSCGLTNYT  318 (333)
Q Consensus       309 l~~aGf~~v~  318 (333)
                      +.++||+...
T Consensus       190 l~~agF~~~~  199 (229)
T d1zx0a1         190 LLEAGFRREN  199 (229)
T ss_dssp             HHHTTCCGGG
T ss_pred             HHHCCCeeEE
Confidence            8889997543

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=7.7e-17  Score=140.17  Aligned_cols=147  Identities=16%  Similarity=0.185  Sum_probs=117.5

Q ss_pred             cccCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCe
Q 019957          143 FNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNL  221 (333)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i  221 (333)
                      +.+...........++...+...++.+|||+|||+|.++..+++. ++.++|+++|+++.+++.|+++++..++  ..++
T Consensus        80 ~~r~~qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~--~~~v  157 (266)
T d1o54a_          80 MKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL--IERV  157 (266)
T ss_dssp             CCC-CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC--GGGE
T ss_pred             ccCCccccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc--ccCc
Confidence            333333444566788899999999999999999999999999887 5677999999999999999999998875  5678


Q ss_pred             EEEEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCC
Q 019957          222 ALVRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLT  301 (333)
Q Consensus       222 ~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  301 (333)
                      .+...|+.. .+....||.|+     +|+++|..+++++.++|||||++++..|...                      .
T Consensus       158 ~~~~~d~~~-~~~~~~~D~V~-----~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~----------------------Q  209 (266)
T d1o54a_         158 TIKVRDISE-GFDEKDVDALF-----LDVPDPWNYIDKCWEALKGGGRFATVCPTTN----------------------Q  209 (266)
T ss_dssp             EEECCCGGG-CCSCCSEEEEE-----ECCSCGGGTHHHHHHHEEEEEEEEEEESSHH----------------------H
T ss_pred             EEEeccccc-cccccceeeeE-----ecCCCHHHHHHHHHhhcCCCCEEEEEeCccc----------------------H
Confidence            888888644 23456788775     5889999999999999999999999776431                      1


Q ss_pred             HHHHHHHHHhCCCcEEEE
Q 019957          302 EEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       302 ~~~l~~ll~~aGf~~v~~  319 (333)
                      .+++.+.+++.||..++.
T Consensus       210 v~~~~~~l~~~gF~~i~~  227 (266)
T d1o54a_         210 VQETLKKLQELPFIRIEV  227 (266)
T ss_dssp             HHHHHHHHHHSSEEEEEE
T ss_pred             HHHHHHHHHHCCceeEEE
Confidence            245667788899977664

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.70  E-value=2.9e-16  Score=134.89  Aligned_cols=164  Identities=18%  Similarity=0.193  Sum_probs=118.8

Q ss_pred             HHHHHhhc-ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957          156 KMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (333)
Q Consensus       156 ~~~~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (333)
                      ..+.+... .....+|||||||+|.++..+++++|..+++.+|+ +..++.+       +.  ..++.++.+|+.+ +.+
T Consensus        70 ~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~-------~~--~~ri~~~~gd~~~-~~p  138 (244)
T d1fp1d2          70 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA-------PP--LSGIEHVGGDMFA-SVP  138 (244)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-------CC--CTTEEEEECCTTT-CCC
T ss_pred             HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc-------CC--CCCeEEecCCccc-ccc
Confidence            34444444 24457899999999999999999999999999997 4443322       21  6789999999865 222


Q ss_pred             CCCcceEEeccccccCCChH--HHHHHHHHhccCCcEEEEEEecccCCCcchhhH----HHHHh--hhccCCCCCHHHHH
Q 019957          235 SGFVDAVHAGAALHCWPSPS--NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGR----VLRER--ILQNYNYLTEEEIE  306 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~t~~~l~  306 (333)
                        ..|+|++.++||+++|..  ++|+++++.|+|||++++.+...+.........    .+.-.  ......-.|.+||+
T Consensus       139 --~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~  216 (244)
T d1fp1d2         139 --QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYE  216 (244)
T ss_dssp             --CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHH
T ss_pred             --cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHH
Confidence              459999999999998764  789999999999999999997654222211111    11110  01223456899999


Q ss_pred             HHHHhCCCcEEEEEE--eCeEEEEEEeC
Q 019957          307 DLCTSCGLTNYTSKV--QQSFIMFAAQK  332 (333)
Q Consensus       307 ~ll~~aGf~~v~~~~--~~~~~~~~a~k  332 (333)
                      ++++++||+.+++..  .+.+.++-++|
T Consensus       217 ~ll~~AGF~~v~v~~~~~~~~~viE~~K  244 (244)
T d1fp1d2         217 KLSKLSGFSKFQVACRAFNSLGVMEFYK  244 (244)
T ss_dssp             HHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred             HHHHHcCCCceEEEecCCCCEEEEEEeC
Confidence            999999999998743  35667777776

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=7.3e-17  Score=136.14  Aligned_cols=113  Identities=14%  Similarity=0.172  Sum_probs=98.3

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      .....+.+.+...++.+|||||||+|+++..+++. ++...|+++|+++.+++.|+++++..+   ..++.++.+|..+.
T Consensus        62 ~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~---~~n~~~~~~d~~~~  138 (213)
T d1dl5a1          62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG---IENVIFVCGDGYYG  138 (213)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGC
T ss_pred             hhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc---ccccccccCchHHc
Confidence            34567778888889999999999999999999876 556789999999999999999998877   67899999999887


Q ss_pred             CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      .+.+++||+|++..+++|+++      ++.+.|||||++++..
T Consensus       139 ~~~~~~fD~I~~~~~~~~~p~------~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         139 VPEFSPYDVIFVTVGVDEVPE------TWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             CGGGCCEEEEEECSBBSCCCH------HHHHHEEEEEEEEEEB
T ss_pred             cccccchhhhhhhccHHHhHH------HHHHhcCCCcEEEEEE
Confidence            777889999999999999864      4678899999998854

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.68  E-value=1.4e-16  Score=133.22  Aligned_cols=105  Identities=18%  Similarity=0.254  Sum_probs=94.0

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--CCCCCcceEEec
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAG  244 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~  244 (333)
                      ...|||||||+|.++..+++..|+..++|+|+++.++..+.++....+   ..|+.++.+|+..+.  ++++++|.|++.
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~---l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~  106 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE---AQNVKLLNIDADTLTDVFEPGEVKRVYLN  106 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC---CSSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHh---ccCchhcccchhhhhcccCchhhhccccc
Confidence            348999999999999999999999999999999999999999999887   579999999998765  778999999998


Q ss_pred             cccccCCCh--------HHHHHHHHHhccCCcEEEEEE
Q 019957          245 AALHCWPSP--------SNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       245 ~vl~h~~d~--------~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      +...|....        ..+|+++.++|||||.|++.|
T Consensus       107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             cccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            887765543        378999999999999999987

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.67  E-value=1.1e-15  Score=129.51  Aligned_cols=150  Identities=15%  Similarity=0.144  Sum_probs=110.6

Q ss_pred             hcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC---CCCCCC
Q 019957          162 FKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---PFASGF  237 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l---p~~~~~  237 (333)
                      +...++.+|||+|||+|.++..+++. ++...|+|+|+++.+++.++++.+.     ..++..+..|....   +.....
T Consensus        69 l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~-----~~~~~~i~~d~~~~~~~~~~~~~  143 (227)
T d1g8aa_          69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-----RRNIVPILGDATKPEEYRALVPK  143 (227)
T ss_dssp             CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-----CTTEEEEECCTTCGGGGTTTCCC
T ss_pred             cccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh-----cCCceEEEEECCCcccccccccc
Confidence            45678999999999999999999987 6778999999999999999998766     45788888887543   334467


Q ss_pred             cceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEE
Q 019957          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNY  317 (333)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v  317 (333)
                      +|+|++  .+.|..++..+++++.+.|||||.++++........... ....            ..++..++ +.||+++
T Consensus       144 vD~i~~--d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~-~~~v------------~~~v~~l~-~~gf~ii  207 (227)
T d1g8aa_         144 VDVIFE--DVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKE-PEQV------------FREVEREL-SEYFEVI  207 (227)
T ss_dssp             EEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSC-HHHH------------HHHHHHHH-HTTSEEE
T ss_pred             eEEEEE--EccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCC-HHHH------------HHHHHHHH-HcCCEEE
Confidence            888765  466777788899999999999999999875432111100 0000            12344444 5699999


Q ss_pred             EEEEeCe----EEEEEEeC
Q 019957          318 TSKVQQS----FIMFAAQK  332 (333)
Q Consensus       318 ~~~~~~~----~~~~~a~k  332 (333)
                      +...-.+    ..+++++|
T Consensus       208 e~i~L~p~~~~H~~vv~rK  226 (227)
T d1g8aa_         208 ERLNLEPYEKDHALFVVRK  226 (227)
T ss_dssp             EEEECTTTSSSEEEEEEEC
T ss_pred             EEEcCCCCCCceEEEEEEe
Confidence            8765444    47788887

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.3e-15  Score=133.02  Aligned_cols=131  Identities=17%  Similarity=0.172  Sum_probs=103.0

Q ss_pred             hcccCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCc-----
Q 019957          142 NFNRSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNT-----  215 (333)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~-----  215 (333)
                      .+....-........+|...+...++.+|||+|||+|.++..|++. ++.++|+++|+++.+++.|+++++..+.     
T Consensus        74 ~~~r~tqiiypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~  153 (324)
T d2b25a1          74 LMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLS  153 (324)
T ss_dssp             HSCCSSCCCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ccCCCCcccccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhh
Confidence            3333333445556678888999999999999999999999999987 6778999999999999999998875321     


Q ss_pred             ---CCCCCeEEEEccCCCCC--CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          216 ---ILTSNLALVRADVCRLP--FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       216 ---~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                         ....++.+..+|+....  +.+..||.|++     ++++|..+|.++.++|||||+|++..|+.
T Consensus       154 ~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~P~i  215 (324)
T d2b25a1         154 HVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYVVNI  215 (324)
T ss_dssp             CSSCCCCCEEEEESCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred             hhhccccceeEEecchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEeCCH
Confidence               01468999999997654  45678999986     56888899999999999999999877643

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.63  E-value=2.1e-15  Score=125.88  Aligned_cols=106  Identities=21%  Similarity=0.246  Sum_probs=90.6

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--CCCCCcceEEec
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--FASGFVDAVHAG  244 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--~~~~~fD~V~~~  244 (333)
                      ...|||||||+|.++..+++..|+..++|+|+++.++..|.++....+   ..|+.++.+|+..+.  +++.++|.|++.
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~---l~Ni~~~~~da~~l~~~~~~~~~~~i~i~  108 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG---VPNIKLLWVDGSDLTDYFEDGEIDRLYLN  108 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC---CSSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhc---cccceeeecCHHHHhhhccCCceehhccc
Confidence            348999999999999999999999999999999999999999998887   579999999998765  678899999876


Q ss_pred             cccccCCCh--------HHHHHHHHHhccCCcEEEEEEe
Q 019957          245 AALHCWPSP--------SNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       245 ~vl~h~~d~--------~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      +.-.+....        ..+|+.+.++|||||.|++.|-
T Consensus       109 fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD  147 (204)
T d1yzha1         109 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD  147 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred             ccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence            543322221        5789999999999999999873

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.5e-15  Score=128.75  Aligned_cols=116  Identities=23%  Similarity=0.337  Sum_probs=95.7

Q ss_pred             HHHHHHHhh--cccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcC--CCCCeEEEEccC
Q 019957          154 EFKMAQEYF--KSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLALVRADV  228 (333)
Q Consensus       154 ~~~~~~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~--~~~~i~~~~~d~  228 (333)
                      ....+.+.+  ...++.+|||||||+|+.+..+++. ++..+|+++|+++++++.|+++++..++.  ...++.++.+|.
T Consensus        62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~  141 (224)
T d1i1na_          62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG  141 (224)
T ss_dssp             HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred             HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence            345666666  4567899999999999999888875 56679999999999999999998765431  135789999999


Q ss_pred             CCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          229 CRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       229 ~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ...+..++.||+|++..+++|+++      ++.+.|||||++++...
T Consensus       142 ~~~~~~~~~fD~I~~~~~~~~ip~------~l~~~LkpGG~LV~pv~  182 (224)
T d1i1na_         142 RMGYAEEAPYDAIHVGAAAPVVPQ------ALIDQLKPGGRLILPVG  182 (224)
T ss_dssp             GGCCGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEES
T ss_pred             ccccchhhhhhhhhhhcchhhcCH------HHHhhcCCCcEEEEEEc
Confidence            887777889999999999999763      47789999999998653

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.61  E-value=6e-15  Score=126.61  Aligned_cols=152  Identities=16%  Similarity=0.183  Sum_probs=111.4

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (333)
                      ...+|||||||+|.++..+.+++|..+++++|. +..++.+       +.  ..++.++.+|+.+..   ..+|++++.+
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~-------~~--~~rv~~~~gD~f~~~---p~aD~~~l~~  146 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL-------SG--SNNLTYVGGDMFTSI---PNADAVLLKY  146 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-------CC--BTTEEEEECCTTTCC---CCCSEEEEES
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC-------cc--cCceEEEecCcccCC---CCCcEEEEEe
Confidence            346899999999999999999999999999997 4444332       21  679999999997632   2579999999


Q ss_pred             ccccCCChH--HHHHHHHHhccCC---cEEEEEEecccCCCcchhhH---HHHHh-h-hccCCCCCHHHHHHHHHhCCCc
Q 019957          246 ALHCWPSPS--NAVAEISRILRSG---GVFVGTTFLRYTSSTSLTGR---VLRER-I-LQNYNYLTEEEIEDLCTSCGLT  315 (333)
Q Consensus       246 vl~h~~d~~--~~l~~~~r~Lkpg---G~l~i~~~~~~~~~~~~~~~---~~~~~-~-~~~~~~~t~~~l~~ll~~aGf~  315 (333)
                      +||+++|..  ++|+++++.|+||   |++++.+...+.........   .+... . .......|.++|+++++++||+
T Consensus       147 vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~  226 (244)
T d1fp2a2         147 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQ  226 (244)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCC
T ss_pred             ecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCc
Confidence            999999874  7899999999998   78888876554322211111   11111 1 1223457899999999999999


Q ss_pred             EEEEEEeCe-EEEEEE
Q 019957          316 NYTSKVQQS-FIMFAA  330 (333)
Q Consensus       316 ~v~~~~~~~-~~~~~a  330 (333)
                      ++++..... ..++-+
T Consensus       227 ~~~i~~~~~~~svIE~  242 (244)
T d1fp2a2         227 HYKISPLTGFLSLIEI  242 (244)
T ss_dssp             EEEEEEEETTEEEEEE
T ss_pred             eEEEEECCCCeEEEEE
Confidence            999765433 344433

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.59  E-value=7e-15  Score=124.17  Aligned_cols=108  Identities=16%  Similarity=0.156  Sum_probs=91.8

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      ....+.+.+...++.+|||||||+|+++..+++...  +|+++|+++..++.|++++..     ..++.++.+|......
T Consensus        58 ~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~--~V~aiE~~~~~~~~A~~~~~~-----~~nv~~~~~d~~~g~~  130 (224)
T d1vbfa_          58 LGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSY-----YNNIKLILGDGTLGYE  130 (224)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTT-----CSSEEEEESCGGGCCG
T ss_pred             hHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHhc--ccccccccHHHHHHHHHHHhc-----ccccccccCchhhcch
Confidence            445677788888999999999999999999998865  999999999999999988765     5689999999876544


Q ss_pred             CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      ..++||+|++...++++++      .+.+.|||||+|++..
T Consensus       131 ~~~pfD~Iiv~~a~~~ip~------~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         131 EEKPYDRVVVWATAPTLLC------KPYEQLKEGGIMILPI  165 (224)
T ss_dssp             GGCCEEEEEESSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred             hhhhHHHHHhhcchhhhhH------HHHHhcCCCCEEEEEE
Confidence            5678999999999998863      3567899999998853

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.2e-15  Score=134.17  Aligned_cols=123  Identities=12%  Similarity=0.144  Sum_probs=99.5

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-------CcCCCCCeEEE
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-------NTILTSNLALV  224 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-------~~~~~~~i~~~  224 (333)
                      ......+.+.+...++.+|||||||+|.++..+++..+...++|+|+++.+++.|++..+..       |. ...++.++
T Consensus       137 ~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~-~~~~i~~~  215 (328)
T d1nw3a_         137 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK-KHAEYTLE  215 (328)
T ss_dssp             HHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTC-CCCCEEEE
T ss_pred             HHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccc-cCCceEEE
Confidence            44556677777888899999999999999999998876678999999999999998766542       21 14579999


Q ss_pred             EccCCCCCCCCCCcc--eEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          225 RADVCRLPFASGFVD--AVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       225 ~~d~~~lp~~~~~fD--~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ++|+.++++.+..+|  +|++ +.+.|.++....|.++.++|||||+++...+.
T Consensus       216 ~gd~~~~~~~~~~~~advi~~-~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~  268 (328)
T d1nw3a_         216 RGDFLSEEWRERIANTSVIFV-NNFAFGPEVDHQLKERFANMKEGGRIVSSKPF  268 (328)
T ss_dssp             ECCTTSHHHHHHHHHCSEEEE-CCTTTCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             ECcccccccccccCcceEEEE-cceecchHHHHHHHHHHHhCCCCcEEEEeccc
Confidence            999999887766564  5554 55678888889999999999999999886543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=1.5e-14  Score=129.78  Aligned_cols=111  Identities=17%  Similarity=0.258  Sum_probs=91.8

Q ss_pred             HHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCC
Q 019957          158 AQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGF  237 (333)
Q Consensus       158 ~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~  237 (333)
                      |.......++.+|||||||+|.++..+++.| ..+|+++|.|+ +++.+++....++.  ..++.++.+++.++++++++
T Consensus        30 I~~~~~~~~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~-~~~~a~~~~~~~~~--~~~i~~i~~~~~~l~~~~~~  105 (328)
T d1g6q1_          30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSS-IIEMAKELVELNGF--SDKITLLRGKLEDVHLPFPK  105 (328)
T ss_dssp             HHHHHHHHTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESST-HHHHHHHHHHHTTC--TTTEEEEESCTTTSCCSSSC
T ss_pred             HHhccccCCcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCH-HHHHHHHHHHHhCc--cccceEEEeehhhccCcccc
Confidence            3333344568899999999999999999887 45899999986 67888888888775  77899999999999988899


Q ss_pred             cceEEecccc---ccCCChHHHHHHHHHhccCCcEEEE
Q 019957          238 VDAVHAGAAL---HCWPSPSNAVAEISRILRSGGVFVG  272 (333)
Q Consensus       238 fD~V~~~~vl---~h~~d~~~~l~~~~r~LkpgG~l~i  272 (333)
                      ||+|++..+.   .+......++.++.++|||||+++=
T Consensus       106 ~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP  143 (328)
T d1g6q1_         106 VDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             EEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEe
Confidence            9999985554   4455678889999999999999863

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=1.1e-13  Score=120.07  Aligned_cols=137  Identities=13%  Similarity=0.162  Sum_probs=105.4

Q ss_pred             HHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC
Q 019957          155 FKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA  234 (333)
Q Consensus       155 ~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~  234 (333)
                      ++....... ..+.+|||+|||+|..+..++...|..+|+++|+|+.+++.|+++++..+   ..++.++.+|+.+ ++.
T Consensus        98 v~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~---~~~v~~~~~d~~~-~~~  172 (274)
T d2b3ta1          98 VEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA---IKNIHILQSDWFS-ALA  172 (274)
T ss_dssp             HHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT---CCSEEEECCSTTG-GGT
T ss_pred             hhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhC---cccceeeeccccc-ccC
Confidence            333434333 34568999999999999999999999999999999999999999999887   4579999999866 344


Q ss_pred             CCCcceEEecc-------------ccccCCC------------hHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHH
Q 019957          235 SGFVDAVHAGA-------------ALHCWPS------------PSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVL  289 (333)
Q Consensus       235 ~~~fD~V~~~~-------------vl~h~~d------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~  289 (333)
                      +++||+|+++-             ++.|-+.            ..+++.++.++|+|||.+++....             
T Consensus       173 ~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~-------------  239 (274)
T d2b3ta1         173 GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW-------------  239 (274)
T ss_dssp             TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS-------------
T ss_pred             CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc-------------
Confidence            67999999962             2222221            135788889999999999984311             


Q ss_pred             HHhhhccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957          290 RERILQNYNYLTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       290 ~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~  319 (333)
                                -..+.+.+++++.||..+++
T Consensus       240 ----------~q~~~v~~~l~~~gf~~i~~  259 (274)
T d2b3ta1         240 ----------QQGEAVRQAFILAGYHDVET  259 (274)
T ss_dssp             ----------SCHHHHHHHHHHTTCTTCCE
T ss_pred             ----------hHHHHHHHHHHHCCCCeEEE
Confidence                      12468889999999986654

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.52  E-value=3.6e-14  Score=121.84  Aligned_cols=142  Identities=17%  Similarity=0.175  Sum_probs=105.1

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEecc
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGA  245 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~  245 (333)
                      ...+|||||||+|.++..+++++|+.+++++|+.+ .++.++.         ..++.++.+|+.+ +.+  ..|++++.+
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~~---------~~r~~~~~~d~~~-~~P--~ad~~~l~~  147 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAPS---------YPGVEHVGGDMFV-SIP--KADAVFMKW  147 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCCC---------CTTEEEEECCTTT-CCC--CCSCEECSS
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhccc---------CCceEEecccccc-cCC--CcceEEEEE
Confidence            35689999999999999999999999999999854 3322221         5789999999855 222  358889999


Q ss_pred             ccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchhhHH---HHHhh----hccCCCCCHHHHHHHHHhCCCcE
Q 019957          246 ALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV---LRERI----LQNYNYLTEEEIEDLCTSCGLTN  316 (333)
Q Consensus       246 vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~t~~~l~~ll~~aGf~~  316 (333)
                      ++|++++.  ..+|+++++.|+|||++++.+..............   +....    .....-.|.++++++++++||+.
T Consensus       148 vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~  227 (243)
T d1kyza2         148 ICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQG  227 (243)
T ss_dssp             SSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSC
T ss_pred             EeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCc
Confidence            99999765  57899999999999999998876542222111111   11111    11234578999999999999999


Q ss_pred             EEEE
Q 019957          317 YTSK  320 (333)
Q Consensus       317 v~~~  320 (333)
                      +++.
T Consensus       228 vkv~  231 (243)
T d1kyza2         228 FKVH  231 (243)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9865

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=6.2e-14  Score=125.12  Aligned_cols=105  Identities=15%  Similarity=0.241  Sum_probs=87.8

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEe
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHA  243 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~  243 (333)
                      ..++.+|||||||+|.++..+++.| ..+|+|+|.|+. ...+++....+++  ..++.++.+|+.+++++.++||+|++
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~G-a~~V~avd~s~~-~~~a~~~~~~n~~--~~~v~~~~~~~~~~~~~~~~~D~ivs  106 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAG-ARKVIGIECSSI-SDYAVKIVKANKL--DHVVTIIKGKVEEVELPVEKVDIIIS  106 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTT-HHHHHHHHHHTTC--TTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhC-CCEEEEEcCcHH-HhhhhhHHHHhCC--ccccceEeccHHHcccccceeEEEee
Confidence            3468899999999999999999987 348999999975 4667777777775  67899999999999988899999998


Q ss_pred             ccccccC---CChHHHHHHHHHhccCCcEEEE
Q 019957          244 GAALHCW---PSPSNAVAEISRILRSGGVFVG  272 (333)
Q Consensus       244 ~~vl~h~---~d~~~~l~~~~r~LkpgG~l~i  272 (333)
                      ..+.+++   .....++..+.++|||||.++-
T Consensus       107 ~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         107 EWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             CCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            6555444   4568899999999999999874

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.50  E-value=6.2e-14  Score=117.51  Aligned_cols=112  Identities=14%  Similarity=0.154  Sum_probs=96.1

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP  232 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp  232 (333)
                      .....+.+.+...++.+|||||||+|+.+..+++.. ..+|+++|.++..++.+++++...+   ..++.++.+|.....
T Consensus        65 ~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g---~~nv~~~~gd~~~g~  140 (215)
T d1jg1a_          65 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAG---VKNVHVILGDGSKGF  140 (215)
T ss_dssp             HHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGCC
T ss_pred             hhHHHHHHhhccCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcC---CceeEEEECccccCC
Confidence            345777888889999999999999999999988763 2379999999999999999999987   689999999998765


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      ...+.||.|++...++++++.      +.+.|||||++++..
T Consensus       141 ~~~~pfD~Iiv~~a~~~ip~~------l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         141 PPKAPYDVIIVTAGAPKIPEP------LIEQLKIGGKLIIPV  176 (215)
T ss_dssp             GGGCCEEEEEECSBBSSCCHH------HHHTEEEEEEEEEEE
T ss_pred             cccCcceeEEeecccccCCHH------HHHhcCCCCEEEEEE
Confidence            567899999999999987644      556799999998754

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.7e-13  Score=121.95  Aligned_cols=112  Identities=19%  Similarity=0.283  Sum_probs=89.6

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCC
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (333)
                      .|.+.....++.+|||||||+|.++..+++.|. .+|+++|.|+.+.. +++....++.  ..++.++.+|+.+++++++
T Consensus        26 ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~-a~~~~~~~~~--~~~i~~~~~~~~~l~~~~~  101 (311)
T d2fyta1          26 FIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQ-AMDIIRLNKL--EDTITLIKGKIEEVHLPVE  101 (311)
T ss_dssp             HHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHH-HHHHHHHTTC--TTTEEEEESCTTTSCCSCS
T ss_pred             HHHhccccCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHH-HHHHHHHhCC--CccceEEEeeHHHhcCccc
Confidence            344444555788999999999999999999873 58999999998764 5555566554  6789999999999988889


Q ss_pred             CcceEEeccccccCC---ChHHHHHHHHHhccCCcEEEE
Q 019957          237 FVDAVHAGAALHCWP---SPSNAVAEISRILRSGGVFVG  272 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~---d~~~~l~~~~r~LkpgG~l~i  272 (333)
                      +||+|++..+.+++.   .+..++....++|||||+++-
T Consensus       102 ~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         102 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             cceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            999999976666553   345777778899999999874

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.44  E-value=1.7e-12  Score=112.06  Aligned_cols=135  Identities=14%  Similarity=0.140  Sum_probs=105.1

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCC
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASG  236 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~  236 (333)
                      .+.+.+  .++.+|||+|||+|.++..+++.+ ..+|+++|+++.+++.++++++.+++  ..++.++++|+.+++. .+
T Consensus       100 ri~~~~--~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~l--~~~v~~~~~D~~~~~~-~~  173 (260)
T d2frna1         100 RMAKVA--KPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKV--EDRMSAYNMDNRDFPG-EN  173 (260)
T ss_dssp             HHHHHC--CTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTC--TTTEEEECSCTTTCCC-CS
T ss_pred             HHHhhc--CCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhCC--CceEEEEEcchHHhcc-CC
Confidence            344443  458899999999999999999886 45899999999999999999999886  6779999999988764 56


Q ss_pred             CcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcE
Q 019957          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTN  316 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~  316 (333)
                      .||.|++...    +....++.++.++|++||.+.+.......                .......+.+.++....|+++
T Consensus       174 ~~D~Ii~~~p----~~~~~~l~~a~~~l~~gG~lh~~~~~~~~----------------~~~~~~~e~~~~~~~~~g~~v  233 (260)
T d2frna1         174 IADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEK----------------LMPREPFETFKRITKEYGYDV  233 (260)
T ss_dssp             CEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGG----------------GTTTTTHHHHHHHHHHTTCEE
T ss_pred             CCCEEEECCC----CchHHHHHHHHhhcCCCCEEEEEeccccc----------------cchhhHHHHHHHHHHHcCCce
Confidence            8999987532    34456788999999999999776544321                111234567788889999976


Q ss_pred             E
Q 019957          317 Y  317 (333)
Q Consensus       317 v  317 (333)
                      .
T Consensus       234 ~  234 (260)
T d2frna1         234 E  234 (260)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.41  E-value=8.6e-13  Score=111.24  Aligned_cols=115  Identities=23%  Similarity=0.333  Sum_probs=90.0

Q ss_pred             HHHHHHHhh--cccCCCeEEEEcCCcCHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHhcCcC--CCCCeEE
Q 019957          154 EFKMAQEYF--KSAQGGLLVDVSCGSGLFSRKFAKSG------TYSGVVALDFSENMLRQCYDFIKQDNTI--LTSNLAL  223 (333)
Q Consensus       154 ~~~~~~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~------~~~~v~g~D~s~~~~~~a~~~~~~~~~~--~~~~i~~  223 (333)
                      ....+.+.+  ...++.+|||||||+|+++..+++..      +..+|+++|+++.+++.+++++...+..  ...++.+
T Consensus        66 ~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~  145 (223)
T d1r18a_          66 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI  145 (223)
T ss_dssp             HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred             hHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEE
Confidence            345566666  45678999999999999998887651      2348999999999999999876543210  1458999


Q ss_pred             EEccCCCCCCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          224 VRADVCRLPFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       224 ~~~d~~~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      +.+|......+.+.||.|++..+++++++      .+.+.|||||++++..
T Consensus       146 ~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         146 VEGDGRKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVPV  190 (223)
T ss_dssp             EESCGGGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred             EecccccccccccceeeEEEEeechhchH------HHHHhcCCCcEEEEEE
Confidence            99999876656789999999999998764      3678999999998854

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=8.8e-13  Score=120.13  Aligned_cols=124  Identities=9%  Similarity=0.038  Sum_probs=90.5

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc------CCCCCeEE-E
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT------ILTSNLAL-V  224 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~------~~~~~i~~-~  224 (333)
                      ...+..+.+.++..++.+|||||||+|..+..++...+..+++|+|+++.+++.|+++.+..+.      .......+ .
T Consensus       202 ~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~  281 (406)
T d1u2za_         202 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL  281 (406)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeee
Confidence            3456667777888889999999999999999999886556899999999999999988764320      00122333 3


Q ss_pred             EccCCCCCCC---CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          225 RADVCRLPFA---SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       225 ~~d~~~lp~~---~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      .+++...++.   -..+|+|++.. +.|.++....|.++.++|||||+++.....
T Consensus       282 ~~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~~~  335 (406)
T d1u2za_         282 KKSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLKSL  335 (406)
T ss_dssp             SSCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             eechhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEeccc
Confidence            3444433211   12467777654 567788889999999999999999886543

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.34  E-value=1.5e-12  Score=107.00  Aligned_cols=118  Identities=16%  Similarity=0.264  Sum_probs=96.1

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---  232 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---  232 (333)
                      +.+.+++.+.+++.+||++||+|..+..+.+..++.+++|+|.++.+++.++++++..    ..++.++.+++.++.   
T Consensus        13 ~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~----~~r~~~~~~~f~~~~~~~   88 (192)
T d1m6ya2          13 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF----SDRVSLFKVSYREADFLL   88 (192)
T ss_dssp             HHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG----TTTEEEEECCGGGHHHHH
T ss_pred             HHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc----cccccchhHHHhhHHHHH
Confidence            4556777888899999999999999999999988889999999999999999998775    458999999987653   


Q ss_pred             --CCCCCcceEEecccc--c-------cCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          233 --FASGFVDAVHAGAAL--H-------CWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       233 --~~~~~fD~V~~~~vl--~-------h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                        +..++||.|+....+  .       .+......|..+.++|+|||.+++.++..
T Consensus        89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2          89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence              345789999875433  1       12233577899999999999999988654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.31  E-value=4.5e-12  Score=113.05  Aligned_cols=110  Identities=15%  Similarity=0.158  Sum_probs=87.5

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC----CCCCCCcce
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVDA  240 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD~  240 (333)
                      .++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.+++++..+|+  ..++.++++|+.+.    +....+||+
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~g-a~~V~~vD~s~~al~~a~~N~~~ngl--~~~~~~~~~d~~~~~~~~~~~~~~fD~  220 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNGV--EDRMKFIVGSAFEEMEKLQKKGEKFDI  220 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTC--GGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCCeeecccCcccchhhhhhhcC-CcEEEeecCCHHHHHHHHHHHHHcCC--CccceeeechhhhhhHHHHhccCCCCc
Confidence            357899999999999999998876 45899999999999999999999986  56899999998642    334678999


Q ss_pred             EEeccccccC---------CChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          241 VHAGAALHCW---------PSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       241 V~~~~vl~h~---------~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      |++.---.-.         .+-.+++..+.++|+|||+|++.+...
T Consensus       221 Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~  266 (324)
T d2as0a2         221 VVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  266 (324)
T ss_dssp             EEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             hhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            9984321110         112457888899999999999988544

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.31  E-value=1.9e-12  Score=115.19  Aligned_cols=109  Identities=19%  Similarity=0.231  Sum_probs=85.8

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC----CCCCCCcc
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVD  239 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD  239 (333)
                      ..++.+|||++||+|.++..++..+  .+|+++|+|+.+++.++++++.+|   ..++.++++|+.+.    +...++||
T Consensus       143 ~~~g~rVLDl~~gtG~~s~~~a~g~--~~V~~vD~s~~al~~a~~n~~~ng---l~~~~~i~~d~~~~~~~~~~~~~~fD  217 (318)
T d1wxxa2         143 RFRGERALDVFSYAGGFALHLALGF--REVVAVDSSAEALRRAEENARLNG---LGNVRVLEANAFDLLRRLEKEGERFD  217 (318)
T ss_dssp             GCCEEEEEEETCTTTHHHHHHHHHE--EEEEEEESCHHHHHHHHHHHHHTT---CTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             HhCCCeeeccCCCCcHHHHHHHhcC--CcEEeecchHHHHHHHHHHHHHcC---CCCcceeeccHHHHhhhhHhhhcCCC
Confidence            3467899999999999999888654  399999999999999999999988   45799999998653    33457899


Q ss_pred             eEEecccccc---------CCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          240 AVHAGAALHC---------WPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       240 ~V~~~~vl~h---------~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      +|++.---..         ..+...++..+.++|||||.|++.+.+.
T Consensus       218 ~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~  264 (318)
T d1wxxa2         218 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  264 (318)
T ss_dssp             EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            9998432111         1122467888899999999999987543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5.3e-10  Score=95.55  Aligned_cols=82  Identities=10%  Similarity=0.033  Sum_probs=67.1

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC------CCCCCcc
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FASGFVD  239 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~~~~fD  239 (333)
                      +..++||+|||+|..+..++...++.+++|+|+++.+++.|+++++.+++  ..++.++..+....-      ..+++||
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l--~~~~~~~~~~~~~~~~~~~~~~~~~~fD  138 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL--SDLIKVVKVPQKTLLMDALKEESEIIYD  138 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC--TTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCC--CcceeeeeeccHHhhhhhhhhcccCcee
Confidence            34689999999999999999887788999999999999999999999886  778888876654321      2356899


Q ss_pred             eEEecccccc
Q 019957          240 AVHAGAALHC  249 (333)
Q Consensus       240 ~V~~~~vl~h  249 (333)
                      +|+|+--...
T Consensus       139 ~ivsNPPY~~  148 (250)
T d2h00a1         139 FCMCNPPFFA  148 (250)
T ss_dssp             EEEECCCCC-
T ss_pred             EEEecCcccc
Confidence            9999765543

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.19  E-value=2.2e-11  Score=96.41  Aligned_cols=108  Identities=18%  Similarity=0.199  Sum_probs=83.3

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-CCCCCCcceEEe
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFVDAVHA  243 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~  243 (333)
                      ..+.+|||+|||+|.++..++.++. .+|+++|.++.+++.+++++...++  ..++.++++|+... +...++||+|++
T Consensus        13 ~~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~--~~~~~ii~~D~~~~l~~~~~~fDiIf~   89 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKA--ENRFTLLKMEAERAIDCLTGRFDLVFL   89 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTC--GGGEEEECSCHHHHHHHBCSCEEEEEE
T ss_pred             CCCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhccc--ccchhhhcccccccccccccccceeEe
Confidence            3578999999999999998888874 5999999999999999999998875  56799999998663 445679999998


Q ss_pred             ccccccCCChHHHHHHHH--HhccCCcEEEEEEec
Q 019957          244 GAALHCWPSPSNAVAEIS--RILRSGGVFVGTTFL  276 (333)
Q Consensus       244 ~~vl~h~~d~~~~l~~~~--r~LkpgG~l~i~~~~  276 (333)
                      .--.. .......+..+.  ++|+|||.+++....
T Consensus        90 DPPy~-~~~~~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          90 DPPYA-KETIVATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             CCSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             chhhc-cchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence            52211 011134455554  579999999987644

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.16  E-value=4.3e-11  Score=96.60  Aligned_cols=119  Identities=15%  Similarity=0.208  Sum_probs=80.5

Q ss_pred             cHHHHHHHHHhhcc--cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC
Q 019957          151 PDEEFKMAQEYFKS--AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV  228 (333)
Q Consensus       151 ~~~~~~~~~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~  228 (333)
                      .+...+.+.+++..  .++.+|||+|||+|.++..+..++.  +++++|.++.+++.++++++..++  ..++....+|.
T Consensus        24 ~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga--~vv~vD~~~~a~~~~~~N~~~~~~--~~~v~~~~~d~   99 (171)
T d1ws6a1          24 PVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEV   99 (171)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHH
T ss_pred             cHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccc--hhhhcccCHHHHhhhhHHHHhhcc--ccceeeeehhc
Confidence            33333444444432  4578999999999999999888875  899999999999999999998775  33444444443


Q ss_pred             C--CCCCCCCCcceEEeccccccCCChHHHHHHH--HHhccCCcEEEEEEe
Q 019957          229 C--RLPFASGFVDAVHAGAALHCWPSPSNAVAEI--SRILRSGGVFVGTTF  275 (333)
Q Consensus       229 ~--~lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~--~r~LkpgG~l~i~~~  275 (333)
                      .  .......+||+|++.--.+ . +....+.++  ..+|+|||++++...
T Consensus       100 ~~~~~~~~~~~fD~If~DPPY~-~-~~~~~l~~l~~~~ll~~~g~ivie~~  148 (171)
T d1ws6a1         100 FLPEAKAQGERFTVAFMAPPYA-M-DLAALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             HHHHHHHTTCCEEEEEECCCTT-S-CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             ccccccccCCccceeEEccccc-c-CHHHHHHHHHHcCCcCCCeEEEEEec
Confidence            1  1123457899999853222 1 222334444  357999999988654

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.15  E-value=7.5e-11  Score=104.38  Aligned_cols=110  Identities=15%  Similarity=0.108  Sum_probs=85.0

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC----CCCCCCcceE
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL----PFASGFVDAV  241 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l----p~~~~~fD~V  241 (333)
                      ++.+|||+.||+|.++..++..+ ..+|+++|+|+.+++.++++++.+++. ..++.++++|+.+.    .-..++||+|
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~-~~~~~~i~~d~~~~l~~~~~~~~~fD~I  221 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLD-MANHQLVVMDVFDYFKYARRHHLTYDII  221 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCC-CTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhccc-CcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence            47899999999999999887765 457999999999999999999988752 35799999998542    2235689999


Q ss_pred             Eeccc-----cccC----CChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          242 HAGAA-----LHCW----PSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       242 ~~~~v-----l~h~----~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      ++.--     -...    .+-.++++.+.++|+|||.|++++...
T Consensus       222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~  266 (317)
T d2b78a2         222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  266 (317)
T ss_dssp             EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            97411     0111    123467888899999999999987543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.15  E-value=1.3e-10  Score=95.43  Aligned_cols=71  Identities=18%  Similarity=0.283  Sum_probs=60.5

Q ss_pred             cccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEE
Q 019957          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVH  242 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~  242 (333)
                      ....+.+|||+|||+|.++..++..+. .+|+|+|+++.+++.|+++        ..++.++++|+.+++   ++||+|+
T Consensus        45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N--------~~~~~~~~~D~~~l~---~~fD~Vi  112 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRN--------CGGVNFMVADVSEIS---GKYDTWI  112 (197)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHH--------CTTSEEEECCGGGCC---CCEEEEE
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHc--------cccccEEEEehhhcC---CcceEEE
Confidence            345688999999999999988888773 4799999999999999986        457889999998874   6899999


Q ss_pred             ecc
Q 019957          243 AGA  245 (333)
Q Consensus       243 ~~~  245 (333)
                      ++-
T Consensus       113 ~NP  115 (197)
T d1ne2a_         113 MNP  115 (197)
T ss_dssp             ECC
T ss_pred             eCc
Confidence            963

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=3.9e-11  Score=100.40  Aligned_cols=120  Identities=12%  Similarity=0.223  Sum_probs=90.6

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      .+.-+.+..++...++.+|||||||+|..+..+++.. ++.+++++|+++.+++.|+++++..|+  ..+++++.+|..+
T Consensus        42 ~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl--~~~i~l~~Gd~~e  119 (214)
T d2cl5a1          42 DAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL--QDKVTILNGASQD  119 (214)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESCHHH
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC--Cccceeeeccccc
Confidence            3444555666666667899999999999999999874 357999999999999999999998886  6789999999865


Q ss_pred             C-C-----CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          231 L-P-----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       231 l-p-----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      . +     +..+.||+|+..+.-+.. .....+.+..++|||||++++-+
T Consensus       120 ~l~~l~~~~~~~~~D~ifiD~~~~~~-~~~~~l~~~~~lLkpGGvIv~Dd  168 (214)
T d2cl5a1         120 LIPQLKKKYDVDTLDMVFLDHWKDRY-LPDTLLLEKCGLLRKGTVLLADN  168 (214)
T ss_dssp             HGGGHHHHSCCCCEEEEEECSCGGGH-HHHHHHHHHTTCEEEEEEEEESC
T ss_pred             cccchhhcccccccceeeeccccccc-ccHHHHHHHhCccCCCcEEEEeC
Confidence            3 2     335689999976421111 12234677788999999877644

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.15  E-value=1.7e-10  Score=99.38  Aligned_cols=118  Identities=15%  Similarity=0.131  Sum_probs=85.9

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-C
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P  232 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p  232 (333)
                      .++.+.+.....+..+|||+|||+|..+..+++. ++.+|+++|+|+.+++.|+++.+..++  ..++.+..+|+.+. +
T Consensus        98 lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-~~~~v~a~Dis~~Al~~A~~Na~~~~~--~~~~~i~~~~~~~~~~  174 (271)
T d1nv8a_          98 LVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGV--SDRFFVRKGEFLEPFK  174 (271)
T ss_dssp             HHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTC--TTSEEEEESSTTGGGG
T ss_pred             hhhhhhhhhccccccEEEEeeeeeehhhhhhhhc-ccceeeechhhhhHHHHHHHHHHHcCC--CceeEEeecccccccc
Confidence            3455555555555678999999999999888764 688999999999999999999999885  66788888888663 3


Q ss_pred             CCCCCcceEEeccc-------cccC--CChH----------HHHHH-HHHhccCCcEEEEEE
Q 019957          233 FASGFVDAVHAGAA-------LHCW--PSPS----------NAVAE-ISRILRSGGVFVGTT  274 (333)
Q Consensus       233 ~~~~~fD~V~~~~v-------l~h~--~d~~----------~~l~~-~~r~LkpgG~l~i~~  274 (333)
                      ...++||+|+++--       +...  .+|.          .++++ +.+.|+|||.+++..
T Consensus       175 ~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei  236 (271)
T d1nv8a_         175 EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI  236 (271)
T ss_dssp             GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred             cccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE
Confidence            33478999999611       1100  1222          22333 457899999988855

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.13  E-value=1.4e-10  Score=101.59  Aligned_cols=119  Identities=10%  Similarity=-0.006  Sum_probs=87.4

Q ss_pred             HHHHHhhc-ccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC---
Q 019957          156 KMAQEYFK-SAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL---  231 (333)
Q Consensus       156 ~~~~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l---  231 (333)
                      +.+.+.+. ..++.+|||+.||+|.++..++..+.  +|+++|.|+.+++.|+++++.+++. ..++.++++|+.+.   
T Consensus       121 ~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA--~V~~VD~s~~al~~a~~N~~ln~~~-~~~~~~i~~D~~~~l~~  197 (309)
T d2igta1         121 EWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLE-QAPIRWICEDAMKFIQR  197 (309)
T ss_dssp             HHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCT-TSCEEEECSCHHHHHHH
T ss_pred             HHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCC--eEEEEeChHHHHHHHHHhhhhhccc-CCcEEEEeCCHHHhHHH
Confidence            44444443 24577999999999999999998764  8999999999999999999988752 33699999998653   


Q ss_pred             -CCCCCCcceEEec---ccc------ccCC-ChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          232 -PFASGFVDAVHAG---AAL------HCWP-SPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       232 -p~~~~~fD~V~~~---~vl------~h~~-d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                       ....++||+|++.   +..      ..+. +...+++.+.++|+|||.+++.+.+.
T Consensus       198 ~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s  254 (309)
T d2igta1         198 EERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  254 (309)
T ss_dssp             HHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             HhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence             1235789999973   111      1111 22456677888999999887777543

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.11  E-value=1.3e-09  Score=89.93  Aligned_cols=92  Identities=14%  Similarity=0.240  Sum_probs=70.6

Q ss_pred             CCCcHHHHHHHH---HhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEE
Q 019957          148 FPGPDEEFKMAQ---EYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV  224 (333)
Q Consensus       148 ~~~~~~~~~~~~---~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~  224 (333)
                      ++.+......+.   .......+.+|||+|||+|.++..++..+ ...|+|+|+++.+++.++++++..+    .+..++
T Consensus        25 y~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi~~~~~~~a~~N~~~~~----~~~~~~   99 (201)
T d1wy7a1          25 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFK----GKFKVF   99 (201)
T ss_dssp             CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGT----TSEEEE
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcC-CCEEEEEcCcHHHHHHHHHHHHHcC----CCceEE
Confidence            344444443332   33444568899999999999999888876 3589999999999999999988764    478899


Q ss_pred             EccCCCCCCCCCCcceEEecccc
Q 019957          225 RADVCRLPFASGFVDAVHAGAAL  247 (333)
Q Consensus       225 ~~d~~~lp~~~~~fD~V~~~~vl  247 (333)
                      .+|+..+   +++||+|+++--.
T Consensus       100 ~~d~~~~---~~~fD~Vi~nPP~  119 (201)
T d1wy7a1         100 IGDVSEF---NSRVDIVIMNPPF  119 (201)
T ss_dssp             ESCGGGC---CCCCSEEEECCCC
T ss_pred             ECchhhh---CCcCcEEEEcCcc
Confidence            9998776   4689999986544

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.9e-10  Score=95.09  Aligned_cols=119  Identities=16%  Similarity=0.124  Sum_probs=94.7

Q ss_pred             HHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-
Q 019957          153 EEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-  230 (333)
Q Consensus       153 ~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-  230 (333)
                      +.-+++..+....+.++|||||||+|+.+.++++..+ +++++.+|.++...+.|++.++..|+  ..++.++.+|+.+ 
T Consensus        46 ~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~--~~~i~~~~Gda~e~  123 (219)
T d2avda1          46 EQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA--EHKIDLRLKPALET  123 (219)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC--TTTEEEEESCHHHH
T ss_pred             HHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc--cceEEEEEeehhhc
Confidence            3445555555566678999999999999999998754 57999999999999999999999886  7789999999854 


Q ss_pred             CC-----CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          231 LP-----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       231 lp-----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ++     ...++||+|+..+--   .+-...+..+.+.|+|||++++-...
T Consensus       124 l~~~~~~~~~~~fD~ifiD~dk---~~y~~~~~~~~~lL~~GGvii~Dn~l  171 (219)
T d2avda1         124 LDELLAAGEAGTFDVAVVDADK---ENCSAYYERCLQLLRPGGILAVLRVL  171 (219)
T ss_dssp             HHHHHHTTCTTCEEEEEECSCS---TTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             chhhhhhcccCCccEEEEeCCH---HHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence            22     235689999986432   23356788999999999999996643

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.06  E-value=4.6e-10  Score=92.26  Aligned_cols=109  Identities=12%  Similarity=0.134  Sum_probs=74.9

Q ss_pred             cCCCeEEEEcCCcCHH----HHHHHHh----CCCCeEEEEeCCHHHHHHHHHHH------------------HhcCcC--
Q 019957          165 AQGGLLVDVSCGSGLF----SRKFAKS----GTYSGVVALDFSENMLRQCYDFI------------------KQDNTI--  216 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~----~~~l~~~----~~~~~v~g~D~s~~~~~~a~~~~------------------~~~~~~--  216 (333)
                      .+..+|+++|||+|.=    +..+.+.    ....+++|+|+|+.+++.|++-.                  ...+..  
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            3456899999999973    3333332    22347999999999999997421                  110000  


Q ss_pred             --------CCCCeEEEEccCCCC-CCCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEE
Q 019957          217 --------LTSNLALVRADVCRL-PFASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGT  273 (333)
Q Consensus       217 --------~~~~i~~~~~d~~~l-p~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~  273 (333)
                              ....+.+...+.... +...+.||+|+|.+||.++.++  .++++.+++.|+|||+|++.
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                    011234455554432 2335789999999999999877  58899999999999998874

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=1.9e-09  Score=87.75  Aligned_cols=121  Identities=9%  Similarity=0.084  Sum_probs=90.1

Q ss_pred             cHHHHHHHHHhhcc-cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC
Q 019957          151 PDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (333)
Q Consensus       151 ~~~~~~~~~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (333)
                      .+...+.+...+.. ..+.+|||++||+|.++..+..+| ...|+.+|.++.+++.++++++..+   ..+..++.+|+.
T Consensus        27 ~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrG-a~~v~~VE~~~~a~~~~k~N~~~~~---~~~~~ii~~d~~  102 (183)
T d2fpoa1          27 TDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLK---AGNARVVNSNAM  102 (183)
T ss_dssp             CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTT---CCSEEEECSCHH
T ss_pred             cHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecC-cceeEEEEEeechhhHHHHHHhhcc---ccceeeeeeccc
Confidence            33334444444432 357899999999999999998887 4589999999999999999988765   567899999986


Q ss_pred             CC-CCCCCCcceEEeccccccCCChHHHHHHHHH--hccCCcEEEEEEec
Q 019957          230 RL-PFASGFVDAVHAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFL  276 (333)
Q Consensus       230 ~l-p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r--~LkpgG~l~i~~~~  276 (333)
                      .. .....+||+|++.--.. .......+..+.+  +|+++|.+++....
T Consensus       103 ~~l~~~~~~fDlIf~DPPY~-~~~~~~~l~~l~~~~~L~~~~iIiiE~~~  151 (183)
T d2fpoa1         103 SFLAQKGTPHNIVFVDPPFR-RGLLEETINLLEDNGWLADEALIYVESEV  151 (183)
T ss_dssp             HHHSSCCCCEEEEEECCSSS-TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             ccccccccccCEEEEcCccc-cchHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            53 33467899999964322 2334566666654  69999999987643

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.97  E-value=2.1e-09  Score=90.16  Aligned_cols=117  Identities=13%  Similarity=0.090  Sum_probs=92.9

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-YSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-  231 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-  231 (333)
                      .-+++..++...+..+|||||+++|+.+..+++..+ +++++.+|.++...+.|++.++..|.  ..++.++.+++.+. 
T Consensus        47 ~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~--~~~i~~~~g~a~~~L  124 (227)
T d1susa1          47 EGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV--DHKIDFREGPALPVL  124 (227)
T ss_dssp             HHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC--GGGEEEEESCHHHHH
T ss_pred             HHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc--ccceeeeehHHHHHH
Confidence            334555555555678999999999999999998754 57999999999999999999999886  67899999999542 


Q ss_pred             C------CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          232 P------FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       232 p------~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      +      ...++||+|+..+-=   .+-...++.+.+.|+|||.+++-..
T Consensus       125 ~~l~~~~~~~~~fD~iFiDa~k---~~y~~~~e~~~~ll~~gGiii~DNv  171 (227)
T d1susa1         125 DEMIKDEKNHGSYDFIFVDADK---DNYLNYHKRLIDLVKVGGVIGYDNT  171 (227)
T ss_dssp             HHHHHCGGGTTCBSEEEECSCS---TTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred             HHHHhccccCCceeEEEeccch---hhhHHHHHHHHhhcCCCcEEEEccC
Confidence            2      125689999986422   3345778899999999999998654

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.96  E-value=2.6e-09  Score=86.73  Aligned_cols=124  Identities=15%  Similarity=0.156  Sum_probs=93.2

Q ss_pred             CCcHHHHHHHHHhhcc-cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc
Q 019957          149 PGPDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (333)
                      |..+..-+.+...+.. ..+.+|||++||+|.++..++.+| ...|+++|.++.+++.+++++...+.  ..++.++++|
T Consensus        23 Pt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srG-a~~v~~ve~~~~a~~~~~~N~~~~~~--~~~~~i~~~D   99 (182)
T d2fhpa1          23 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAITKE--PEKFEVRKMD   99 (182)
T ss_dssp             CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHTC--GGGEEEEESC
T ss_pred             cCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecc-hhHHHHHHHHHHHHHHHHHHhhhhhc--cccccccccc
Confidence            4445555666666653 468899999999999999999988 45899999999999999999987764  5589999999


Q ss_pred             CCCC-C---CCCCCcceEEeccccccCCChHHHHHHHHH--hccCCcEEEEEEec
Q 019957          228 VCRL-P---FASGFVDAVHAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFL  276 (333)
Q Consensus       228 ~~~l-p---~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r--~LkpgG~l~i~~~~  276 (333)
                      +... .   ....+||+|++.--. +..+....+..+..  +|+++|.+++....
T Consensus       100 ~~~~l~~~~~~~~~fDlIflDPPY-~~~~~~~~l~~i~~~~~L~~~giIi~E~~~  153 (182)
T d2fhpa1         100 ANRALEQFYEEKLQFDLVLLDPPY-AKQEIVSQLEKMLERQLLTNEAVIVCETDK  153 (182)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCG-GGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             chhhhhhhcccCCCcceEEechhh-hhhHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence            8652 1   235589999985332 22344566777754  69999999886543

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.94  E-value=6.8e-09  Score=91.24  Aligned_cols=112  Identities=16%  Similarity=0.080  Sum_probs=85.1

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc--CcCCCCCeEEEEccCCCC-CCCCCCcceE
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD--NTILTSNLALVRADVCRL-PFASGFVDAV  241 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~~~~~i~~~~~d~~~l-p~~~~~fD~V  241 (333)
                      ..+++||.||.|.|..+..+.+..+..+++++|+++.+++.+++.+...  +....++++++.+|+... .-.+++||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            3467999999999999999988776779999999999999999987432  211257899999999653 2335689999


Q ss_pred             EeccccccC-CC------hHHHHHHHHHhccCCcEEEEEEec
Q 019957          242 HAGAALHCW-PS------PSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       242 ~~~~vl~h~-~d------~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ++...=.+. ..      ...+++.+++.|+|||++++....
T Consensus       156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s  197 (312)
T d1uira_         156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM  197 (312)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCC
Confidence            964321111 11      157899999999999999887643

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.83  E-value=9.5e-09  Score=86.65  Aligned_cols=86  Identities=9%  Similarity=0.239  Sum_probs=70.6

Q ss_pred             cHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          151 PDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      .+..++.+.+.+...++.+|||||||+|.++..+.+.+.  +++++|+++.+++..+++...     .+++.++.+|+.+
T Consensus         6 d~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~--~v~avE~D~~l~~~l~~~~~~-----~~n~~i~~~D~l~   78 (235)
T d1qama_           6 SKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVD-----HDNFQVLNKDILQ   78 (235)
T ss_dssp             CHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTT-----CCSEEEECCCGGG
T ss_pred             CHHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC--ceEEEeeccchHHHHHHHhhc-----ccchhhhhhhhhh
Confidence            345567788888888899999999999999999999875  999999999999999987655     5689999999998


Q ss_pred             CCCCCCCcceEEe
Q 019957          231 LPFASGFVDAVHA  243 (333)
Q Consensus       231 lp~~~~~fD~V~~  243 (333)
                      ++++......|++
T Consensus        79 ~~~~~~~~~~vv~   91 (235)
T d1qama_          79 FKFPKNQSYKIFG   91 (235)
T ss_dssp             CCCCSSCCCEEEE
T ss_pred             ccccccccceeee
Confidence            8765443334443

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=3.3e-08  Score=81.39  Aligned_cols=102  Identities=21%  Similarity=0.178  Sum_probs=88.1

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      .++.+|||+|+|.|.-+..++-..|+.+++.+|.+..-+.+.++.....+   ..++.++...++++.. +.+||+|++.
T Consensus        64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~---L~nv~v~~~R~E~~~~-~~~fD~V~sR  139 (207)
T d1jsxa_          64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK---LENIEPVQSRVEEFPS-EPPFDGVISR  139 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT---CSSEEEEECCTTTSCC-CSCEEEEECS
T ss_pred             hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcC---Ccceeeeccchhhhcc-ccccceehhh
Confidence            34679999999999999999988899999999999999999888887776   5689999999998753 5689999997


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      .+    .....++.-+...+++||.+++.-
T Consensus       140 A~----~~~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         140 AF----ASLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             CS----SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             hh----cCHHHHHHHHHHhcCCCcEEEEEC
Confidence            76    557888999999999999998866

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.79  E-value=2.4e-08  Score=86.28  Aligned_cols=110  Identities=15%  Similarity=0.124  Sum_probs=82.3

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCc-------CCCCCeEEEEccCCCCCCCCCC
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNT-------ILTSNLALVRADVCRLPFASGF  237 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-------~~~~~i~~~~~d~~~lp~~~~~  237 (333)
                      ..+.+||.||+|.|..+..+.+.. ..+++.+|+++.+++.+++.+.....       ...++++++.+|+...--.+++
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~  149 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHD-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  149 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSC-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCceEEEecCCchHHHHHHHHhC-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence            446799999999999999888754 56899999999999999987643210       0157899999998653223578


Q ss_pred             cceEEeccccccCCCh-----HHHHHHHHHhccCCcEEEEEEec
Q 019957          238 VDAVHAGAALHCWPSP-----SNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       238 fD~V~~~~vl~h~~d~-----~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ||+|++...- ....+     ..+++.+++.|+|||++++...+
T Consensus       150 yDvIi~D~~~-~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s  192 (276)
T d1mjfa_         150 FDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS  192 (276)
T ss_dssp             EEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCEEEEeCCC-CCCCcccccCHHHHHhhHhhcCCCceEEEecCC
Confidence            9999974332 22112     47899999999999999887643

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.77  E-value=6e-08  Score=83.48  Aligned_cols=111  Identities=15%  Similarity=0.169  Sum_probs=84.7

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-CcCCCCCeEEEEccCCCC-CCCCCCcceEE
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRL-PFASGFVDAVH  242 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d~~~l-p~~~~~fD~V~  242 (333)
                      ..+.+||-||.|.|..+..+.+..+..+++.+|+++.+++.+++.+... +....++++++.+|.... .-.+++||+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            3457999999999999999998766679999999999999999987532 212367999999998542 23357899999


Q ss_pred             eccccccCC----ChHHHHHHHHHhccCCcEEEEEEe
Q 019957          243 AGAALHCWP----SPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       243 ~~~vl~h~~----d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      ....-..-.    -...+++.+++.|+|||+++....
T Consensus       154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~  190 (274)
T d1iy9a_         154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD  190 (274)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred             EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence            753211100    125789999999999999998754

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=1.5e-07  Score=84.32  Aligned_cols=114  Identities=14%  Similarity=0.202  Sum_probs=86.2

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      +.+.+.+.+++...++.+|||+-||+|.++..|++.+.  +|+|+|.++.+++.|+++.+.++   ..++.++.++.++.
T Consensus       198 e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~--~V~gvE~~~~ai~~A~~na~~n~---i~n~~~~~~~~~~~  272 (358)
T d1uwva2         198 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLNG---LQNVTFYHENLEED  272 (358)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCTTSC
T ss_pred             hHHHHHHHHhhccCCCceEEEecccccccchhcccccc--EEEeccCcHHHHHHHHHhHHhcc---cccceeeecchhhh
Confidence            44556677777777788999999999999999998765  99999999999999999999888   67999999998763


Q ss_pred             -C---CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          232 -P---FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       232 -p---~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                       +   ....++|+|+..=-=.-   ..+.++.+.+. +|.-+++++.
T Consensus       273 ~~~~~~~~~~~d~vilDPPR~G---~~~~~~~l~~~-~~~~ivYVSC  315 (358)
T d1uwva2         273 VTKQPWAKNGFDKVLLDPARAG---AAGVMQQIIKL-EPIRIVYVSC  315 (358)
T ss_dssp             CSSSGGGTTCCSEEEECCCTTC---CHHHHHHHHHH-CCSEEEEEES
T ss_pred             hhhhhhhhccCceEEeCCCCcc---HHHHHHHHHHc-CCCEEEEEeC
Confidence             2   23467999987311000   02456666553 6766777754

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.76  E-value=9.2e-08  Score=82.92  Aligned_cols=111  Identities=13%  Similarity=0.071  Sum_probs=83.8

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-CcCCCCCeEEEEccCCCC-CCCCCCcceEEe
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRL-PFASGFVDAVHA  243 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~  243 (333)
                      .+.+||-||.|.|..+..+.+..+..+++++|+++.+++.+++.+... +....++++++.+|+... .-.+++||+|++
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~  168 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  168 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence            457999999999999999998766678999999999999999977532 111257999999998553 333568999997


Q ss_pred             ccccccC-C----ChHHHHHHHHHhccCCcEEEEEEec
Q 019957          244 GAALHCW-P----SPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       244 ~~vl~h~-~----d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ...-... +    -...+++.+++.|+|||++++...+
T Consensus       169 D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s  206 (295)
T d1inla_         169 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  206 (295)
T ss_dssp             EC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             cCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence            5322111 1    1257899999999999999887643

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.73  E-value=4.9e-08  Score=86.51  Aligned_cols=125  Identities=12%  Similarity=0.086  Sum_probs=89.4

Q ss_pred             CCCcHHHHHHHHHh----hcccCCCeEEEEcCCcCHHHHHHHHh-----CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCC
Q 019957          148 FPGPDEEFKMAQEY----FKSAQGGLLVDVSCGSGLFSRKFAKS-----GTYSGVVALDFSENMLRQCYDFIKQDNTILT  218 (333)
Q Consensus       148 ~~~~~~~~~~~~~~----l~~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~  218 (333)
                      +..++...+.+...    +...++.+|||.|||+|.++..+...     .....++|+|+++.+++.|+.++...+    
T Consensus        95 ~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~----  170 (328)
T d2f8la1          95 QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR----  170 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT----
T ss_pred             EECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh----
Confidence            34566655554433    34556778999999999999887653     233479999999999999998877653    


Q ss_pred             CCeEEEEccCCCCCCCCCCcceEEeccccccCCC------------------hHHHHHHHHHhccCCcEEEEEEecc
Q 019957          219 SNLALVRADVCRLPFASGFVDAVHAGAALHCWPS------------------PSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       219 ~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~d------------------~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      ....+..+|..... ...+||+|+++--+.....                  ...++..+.+.|+|||++.+..|..
T Consensus       171 ~~~~~~~~d~~~~~-~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~  246 (328)
T d2f8la1         171 QKMTLLHQDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  246 (328)
T ss_dssp             CCCEEEESCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             hhhhhhcccccccc-ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence            35667777765433 3568999999754322111                  1246899999999999999988764

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.73  E-value=1.8e-08  Score=84.01  Aligned_cols=116  Identities=18%  Similarity=0.223  Sum_probs=86.5

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc
Q 019957          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD  227 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d  227 (333)
                      +.+....+.+.+.+...++.+|||.|||+|.++..+.+.. ....++|+|+++..+..            .....++.+|
T Consensus         2 ~TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~------------~~~~~~~~~~   69 (223)
T d2ih2a1           2 ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL------------PPWAEGILAD   69 (223)
T ss_dssp             CCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC------------CTTEEEEESC
T ss_pred             CCCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh------------cccceeeeee
Confidence            3567778889999988888999999999999998887663 34579999999865432            2345777888


Q ss_pred             CCCCCCCCCCcceEEeccccccCC---C--------------------------hHHHHHHHHHhccCCcEEEEEEecc
Q 019957          228 VCRLPFASGFVDAVHAGAALHCWP---S--------------------------PSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       228 ~~~lp~~~~~fD~V~~~~vl~h~~---d--------------------------~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      ...... ..+||+|+++-......   +                          ...++..+.+.|++||++.+..+..
T Consensus        70 ~~~~~~-~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~  147 (223)
T d2ih2a1          70 FLLWEP-GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  147 (223)
T ss_dssp             GGGCCC-SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             hhcccc-ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence            766543 46899999875543211   0                          1245778889999999999998765

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=9.5e-08  Score=82.59  Aligned_cols=110  Identities=15%  Similarity=0.144  Sum_probs=83.2

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhc-CcCCCCCeEEEEccCCCC-CCCCCCcceEEe
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQD-NTILTSNLALVRADVCRL-PFASGFVDAVHA  243 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~  243 (333)
                      .+++||-||.|.|..+..+.+..+..+++.+|+++.+++.+++.+... +....++++++.+|+... .-..++||+|++
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~  157 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT  157 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEE
Confidence            457999999999999999998765679999999999999999987531 111267999999997542 223568999997


Q ss_pred             ccccccCCC-----hHHHHHHHHHhccCCcEEEEEEec
Q 019957          244 GAALHCWPS-----PSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       244 ~~vl~h~~d-----~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ... .-...     ...+++.+++.|+|||++++....
T Consensus       158 D~~-~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         158 DSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             ECC------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cCC-CCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            532 11111     136799999999999999987654

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.69  E-value=1e-07  Score=83.65  Aligned_cols=124  Identities=16%  Similarity=0.161  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG-TYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR  230 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~  230 (333)
                      +.........+.+.++.+|||+.+|.|.=+..++... ....+++.|+++..++..++++++.+   ..++.....|...
T Consensus       102 D~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~---~~~i~~~~~d~~~  178 (313)
T d1ixka_         102 EASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG---VLNVILFHSSSLH  178 (313)
T ss_dssp             CHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT---CCSEEEESSCGGG
T ss_pred             cccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH---hhccccccccccc
Confidence            3444556667788889999999999999888787663 34589999999999999999999887   5678888788777


Q ss_pred             CCCCCCCcceEEe------ccccccCCCh----------------HHHHHHHHHhccCCcEEEEEEeccc
Q 019957          231 LPFASGFVDAVHA------GAALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       231 lp~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      ++..+..||.|++      .+++..-++.                .++|..+.+.|||||.++.+|-...
T Consensus       179 ~~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~  248 (313)
T d1ixka_         179 IGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE  248 (313)
T ss_dssp             GGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred             cccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC
Confidence            7666788999996      3334333221                2568888899999999999986543

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.68  E-value=6e-10  Score=94.69  Aligned_cols=94  Identities=11%  Similarity=0.248  Sum_probs=75.3

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ...++.+.+.+...++.+|||||||+|.++..|.+.+.  +++++|+++.+++.+++++..     .+++.++.+|+.++
T Consensus        15 ~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~--~v~aIE~D~~l~~~l~~~~~~-----~~n~~ii~~D~l~~   87 (245)
T d1yuba_          15 EKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKL-----NTRVTLIHQDILQF   87 (245)
T ss_dssp             TTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTT-----CSEEEECCSCCTTT
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcC--ceeEeeecccchhhhhhhhhh-----ccchhhhhhhhhcc
Confidence            33457778888878888999999999999999999876  999999999998887766543     56899999999998


Q ss_pred             CCCCCCcceEEeccccccCCCh
Q 019957          232 PFASGFVDAVHAGAALHCWPSP  253 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~  253 (333)
                      +++...++.|+++-- .|+..+
T Consensus        88 ~~~~~~~~~vv~NLP-Y~Ist~  108 (245)
T d1yuba_          88 QFPNKQRYKIVGNIP-YHLSTQ  108 (245)
T ss_dssp             TCCCSSEEEEEEECC-SSSCHH
T ss_pred             ccccceeeeEeeeee-hhhhHH
Confidence            887767776666544 455544

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.68  E-value=2.6e-07  Score=77.37  Aligned_cols=127  Identities=16%  Similarity=0.048  Sum_probs=98.5

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC---CCCCcceEE
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF---ASGFVDAVH  242 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~---~~~~fD~V~  242 (333)
                      ...+|+|||+|.|.-+..++-..|+.+++.+|.+..-+.+.+......+   ..++.++...++.+..   ..++||+|+
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~---L~n~~i~~~R~E~~~~~~~~~~~~D~v~  146 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ---LENTTFCHDRAETFGQRKDVRESYDIVT  146 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT---CSSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhC---CCCcEEEeehhhhccccccccccceEEE
Confidence            4578999999999999999888888899999999998888888777766   5688999988876542   135899999


Q ss_pred             eccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957          243 AGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~  319 (333)
                      +..+    .....++.-+...+++||.+++.--..           +..         ..++.+..+...|++...+
T Consensus       147 sRAv----a~l~~ll~~~~~~l~~~g~~i~~KG~~-----------~~~---------El~~a~~~~~~~~~~~~~v  199 (239)
T d1xdza_         147 ARAV----ARLSVLSELCLPLVKKNGLFVALKAAS-----------AEE---------ELNAGKKAITTLGGELENI  199 (239)
T ss_dssp             EECC----SCHHHHHHHHGGGEEEEEEEEEEECC------------CHH---------HHHHHHHHHHHTTEEEEEE
T ss_pred             Ehhh----hCHHHHHHHHhhhcccCCEEEEECCCC-----------hHH---------HHHHHHHHHHHcCCEEEEE
Confidence            9765    567888999999999999998866221           111         0134556778889887654

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.65  E-value=1.5e-07  Score=81.92  Aligned_cols=111  Identities=13%  Similarity=0.112  Sum_probs=82.2

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-cCCCCCeEEEEccCCCC-CCCCCCcceEEe
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL-PFASGFVDAVHA  243 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~l-p~~~~~fD~V~~  243 (333)
                      .+.+||-||.|.|..+..+.+..+..+++.+|+++.+++.+++.+.... ....++++++.+|.... .-..++||+|+.
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~  185 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  185 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence            4579999999999999999987656699999999999999999875421 11257899999998653 223578999997


Q ss_pred             ccccccCC----ChHHHHHHHHHhccCCcEEEEEEec
Q 019957          244 GAALHCWP----SPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       244 ~~vl~h~~----d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ...-..-+    -...+++.+++.|+|||+++....+
T Consensus       186 D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s  222 (312)
T d2b2ca1         186 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES  222 (312)
T ss_dssp             CCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred             cCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence            53321111    1146799999999999999987643

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.62  E-value=5.8e-08  Score=78.32  Aligned_cols=113  Identities=20%  Similarity=0.334  Sum_probs=87.3

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---  232 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---  232 (333)
                      +.+.+.+.+.+++.++|..+|.|..+..+.+...  +|+|+|.++.++..+++..       ..++.++++++.++.   
T Consensus         8 ~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~~--~viaiD~D~~ai~~a~~~~-------~~~~~~~~~~f~~~~~~l   78 (182)
T d1wg8a2           8 QEALDLLAVRPGGVYVDATLGGAGHARGILERGG--RVIGLDQDPEAVARAKGLH-------LPGLTVVQGNFRHLKRHL   78 (182)
T ss_dssp             HHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHTC-------CTTEEEEESCGGGHHHHH
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcccC--cEEEEhhhhhHHHHHhhcc-------ccceeEeehHHHHHHHHH
Confidence            3445667788899999999999999999998754  9999999999999887642       568999999987753   


Q ss_pred             --CCCCCcceEEecccc--ccCCCh-------HHHHHHHHHhccCCcEEEEEEecc
Q 019957          233 --FASGFVDAVHAGAAL--HCWPSP-------SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       233 --~~~~~fD~V~~~~vl--~h~~d~-------~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                        ...+.+|.|++...+  .++.++       ...|.....+|++||.+++.++..
T Consensus        79 ~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs  134 (182)
T d1wg8a2          79 AALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS  134 (182)
T ss_dssp             HHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred             HHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence              334679999874332  223333       346788889999999999988643

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.60  E-value=3.6e-07  Score=73.84  Aligned_cols=123  Identities=12%  Similarity=0.105  Sum_probs=86.1

Q ss_pred             cHHHHHHHHHhhcc-cCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCC
Q 019957          151 PDEEFKMAQEYFKS-AQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVC  229 (333)
Q Consensus       151 ~~~~~~~~~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~  229 (333)
                      .+..-+.+...+.. ..+.+|||+.||+|.++..+..+| ...|+.+|.+..+++..+++++..+.. .....+...|..
T Consensus        27 ~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRG-A~~v~fVE~~~~a~~~ik~Ni~~l~~~-~~~~~~~~~d~~  104 (183)
T d2ifta1          27 GDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCS-SEQAEVINQSSL  104 (183)
T ss_dssp             -CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCC-TTTEEEECSCHH
T ss_pred             cHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeec-ceeeEEeecccchhhhHhhHHhhhccc-cccccccccccc
Confidence            33344445555543 357799999999999999999998 569999999999999999998876531 234566666643


Q ss_pred             C---CCCCCCCcceEEeccccccCCChHHHHHHHHH--hccCCcEEEEEEec
Q 019957          230 R---LPFASGFVDAVHAGAALHCWPSPSNAVAEISR--ILRSGGVFVGTTFL  276 (333)
Q Consensus       230 ~---lp~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r--~LkpgG~l~i~~~~  276 (333)
                      .   ......+||+|++.=-... ......+..+..  +|+++|.+++....
T Consensus       105 ~~l~~~~~~~~fDlIFlDPPY~~-~~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         105 DFLKQPQNQPHFDVVFLDPPFHF-NLAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             HHTTSCCSSCCEEEEEECCCSSS-CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             ccccccccCCcccEEEechhHhh-hhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence            2   2334567999998543221 223456676654  79999999997653

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.60  E-value=2.7e-07  Score=79.88  Aligned_cols=111  Identities=18%  Similarity=0.185  Sum_probs=83.9

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC-cCCCCCeEEEEccCCCC--CCCCCCcceEE
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN-TILTSNLALVRADVCRL--PFASGFVDAVH  242 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~~~~~i~~~~~d~~~l--p~~~~~fD~V~  242 (333)
                      .+.+||-||.|.|..+..+.+..+..+++++|+++.+++.+++.+.... ....+++.++.+|....  ...+++||+|+
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi  159 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI  159 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence            4579999999999999999987666789999999999999999764211 11267899999997542  12356899999


Q ss_pred             eccccccCC----ChHHHHHHHHHhccCCcEEEEEEec
Q 019957          243 AGAALHCWP----SPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       243 ~~~vl~h~~----d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ....=..-.    -...+++.+++.|+|||++++...+
T Consensus       160 ~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  197 (290)
T d1xj5a_         160 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES  197 (290)
T ss_dssp             ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            743211100    0157899999999999999997744

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.56  E-value=4.5e-08  Score=82.08  Aligned_cols=109  Identities=13%  Similarity=0.100  Sum_probs=73.3

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHH----hCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAK----SGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ..+.+++...++.+|||||++.|..+..++.    .+..++++++|+++........        ...++.++.+|..+.
T Consensus        70 ~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~--------~~~~I~~i~gDs~~~  141 (232)
T d2bm8a1          70 AVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS--------DMENITLHQGDCSDL  141 (232)
T ss_dssp             HHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG--------GCTTEEEEECCSSCS
T ss_pred             HHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc--------cccceeeeecccccH
Confidence            4445556555677999999999987665543    3456799999998754322211        157899999998654


Q ss_pred             C----CCCCCcceEEeccccccCCChH-HHHHHHHHhccCCcEEEEEEe
Q 019957          232 P----FASGFVDAVHAGAALHCWPSPS-NAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       232 p----~~~~~fD~V~~~~vl~h~~d~~-~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      .    +....+|+|+.-..  |..+.. ..+ ++...|++||++++.+.
T Consensus       142 ~~~~~l~~~~~dlIfID~~--H~~~~v~~~~-~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         142 TTFEHLREMAHPLIFIDNA--HANTFNIMKW-AVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             GGGGGGSSSCSSEEEEESS--CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred             HHHHHHHhcCCCEEEEcCC--cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence            3    33556888886543  333322 223 45689999999999774

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=3.4e-07  Score=79.17  Aligned_cols=122  Identities=17%  Similarity=0.197  Sum_probs=91.6

Q ss_pred             HHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-
Q 019957          154 EFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-  232 (333)
Q Consensus       154 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-  232 (333)
                      .-......+.+.++.+|||+.+|.|.=+..++..+.+..++++|+++..++..+++++..|   ..++.....|..... 
T Consensus        90 sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g---~~~~~~~~~~~~~~~~  166 (284)
T d1sqga2          90 SAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG---MKATVKQGDGRYPSQW  166 (284)
T ss_dssp             HHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT---CCCEEEECCTTCTHHH
T ss_pred             cccccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccc---ccceeeeccccccchh
Confidence            3345566778888999999999999999999888766789999999999999999999987   345554444433221 


Q ss_pred             CCCCCcceEEe------ccccccCCCh----------------HHHHHHHHHhccCCcEEEEEEeccc
Q 019957          233 FASGFVDAVHA------GAALHCWPSP----------------SNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       233 ~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      ...+.||.|++      .+++..-++.                .++|+.+.+.|||||+++.+|-...
T Consensus       167 ~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~  234 (284)
T d1sqga2         167 CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL  234 (284)
T ss_dssp             HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred             cccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc
Confidence            23468999996      3445443332                2578888899999999999986553

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=1.5e-06  Score=69.73  Aligned_cols=98  Identities=20%  Similarity=0.257  Sum_probs=74.0

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--------CCC
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------FAS  235 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~~~  235 (333)
                      .++.+|||+||+.|.++..+.+. +....++++|+.+-         +     ..+++.++++|+....        ...
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~-----~i~~~~~~~~d~~~~~~~~~~~~~~~~   86 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------D-----PIVGVDFLQGDFRDELVMKALLERVGD   86 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------C-----CCTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------c-----ccCCceEeecccccchhhhhhhhhccC
Confidence            46789999999999999988875 44568999998651         0     1568899999997632        235


Q ss_pred             CCcceEEeccccccCCCh-----------HHHHHHHHHhccCCcEEEEEEec
Q 019957          236 GFVDAVHAGAALHCWPSP-----------SNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~-----------~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      .++|+|++.....-..+.           ...+.-+.++|++||.+++-.+.
T Consensus        87 ~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~  138 (180)
T d1ej0a_          87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ  138 (180)
T ss_dssp             CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             cceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence            689999997765443322           24567778999999999998864

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.50  E-value=4.7e-07  Score=82.96  Aligned_cols=147  Identities=16%  Similarity=0.143  Sum_probs=106.6

Q ss_pred             cchhHHHHhhHHhhcc-----cCCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCC-------------C
Q 019957          129 PFVSFLYERGWRQNFN-----RSGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGT-------------Y  190 (333)
Q Consensus       129 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-------------~  190 (333)
                      +.++..|+...++...     .+.++.+...++.+.+.+.+.++.+|+|..||+|.++..+.+...             .
T Consensus       120 d~~g~~yE~ll~~~~~~~~k~~G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~  199 (425)
T d2okca1         120 DVKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRD  199 (425)
T ss_dssp             HHHHHHHHHHHHHHHTCTTTCCGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhccchhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhh
Confidence            4456666666554321     134788999999999999988889999999999999987766421             1


Q ss_pred             CeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccccccCC----------------C-h
Q 019957          191 SGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAALHCWP----------------S-P  253 (333)
Q Consensus       191 ~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~vl~h~~----------------d-~  253 (333)
                      ..++|+|+++.+...|+.++--.+.. .....+..+|....+ ...+||+|+++--+....                + -
T Consensus       200 ~~l~g~E~~~~~~~la~~n~~l~g~~-~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~  277 (425)
T d2okca1         200 KALHGVDNTPLVVTLASMNLYLHGIG-TDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQ  277 (425)
T ss_dssp             TTEEEEESCHHHHHHHHHHHHHTTCC-SSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHH
T ss_pred             hhhhhhhccHHHHHHHHhhhhhcCCc-cccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHH
Confidence            25999999999999999877665531 234556777775543 356899999964442110                0 1


Q ss_pred             HHHHHHHHHhccCCcEEEEEEecc
Q 019957          254 SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       254 ~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      ..++..+...|++||++.+..|..
T Consensus       278 ~~Fi~~~~~~Lk~~G~~~iI~p~~  301 (425)
T d2okca1         278 LNFLQHMMLMLKTGGRAAVVLPDN  301 (425)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             HHHHHHHHHhcCCCCeEEEEechH
Confidence            358999999999999999988754

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=8.9e-07  Score=75.90  Aligned_cols=87  Identities=16%  Similarity=0.227  Sum_probs=70.6

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ....+.+.+.+...++..|||||+|.|.++..|.+.+.  +++++|+++.++...++++.....  ..++.++.+|+...
T Consensus         7 ~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~~~--~~~~~~i~~D~l~~   82 (278)
T d1zq9a1           7 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPV--ASKLQVLVGDVLKT   82 (278)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTT--GGGEEEEESCTTTS
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhhcc--ccchhhhHHHHhhh
Confidence            34567777777777888999999999999999999976  999999999999999988766432  46899999999877


Q ss_pred             CCCCCCcceEEec
Q 019957          232 PFASGFVDAVHAG  244 (333)
Q Consensus       232 p~~~~~fD~V~~~  244 (333)
                      +++  .++.|+++
T Consensus        83 ~~~--~~~~vV~N   93 (278)
T d1zq9a1          83 DLP--FFDTCVAN   93 (278)
T ss_dssp             CCC--CCSEEEEE
T ss_pred             hhh--hhhhhhcc
Confidence            644  34566654

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.2e-06  Score=74.23  Aligned_cols=122  Identities=12%  Similarity=0.085  Sum_probs=85.3

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC-
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKS-GTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-  234 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-  234 (333)
                      .....+.+.++.+|||+++|.|.-+..++.. .....++++|+++.-++..+++++..|   ..++.+...|...+... 
T Consensus        85 l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g---~~~~~~~~~d~~~~~~~~  161 (293)
T d2b9ea1          85 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG---VSCCELAEEDFLAVSPSD  161 (293)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCGGGSCTTC
T ss_pred             ccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcC---ccceeeeehhhhhhcccc
Confidence            3445567788999999999999988877765 345689999999999999999999988   57899999998765422 


Q ss_pred             --CCCcceEEec------cccccCCCh------------------HHHHHHHHHhccCCcEEEEEEecccCCCc
Q 019957          235 --SGFVDAVHAG------AALHCWPSP------------------SNAVAEISRILRSGGVFVGTTFLRYTSST  282 (333)
Q Consensus       235 --~~~fD~V~~~------~vl~h~~d~------------------~~~l~~~~r~LkpgG~l~i~~~~~~~~~~  282 (333)
                        .+.||.|+..      +++..-++.                  ...+..+. .++|||.|+.+|-......+
T Consensus       162 ~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~EN  234 (293)
T d2b9ea1         162 PRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEEN  234 (293)
T ss_dssp             GGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGT
T ss_pred             cccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHh
Confidence              3579999962      333222111                  12333333 47899999998866543333

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=5.4e-07  Score=76.31  Aligned_cols=75  Identities=8%  Similarity=0.158  Sum_probs=63.0

Q ss_pred             HHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC
Q 019957          152 DEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL  231 (333)
Q Consensus       152 ~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l  231 (333)
                      ...++.+.+.+...++..|||||||.|.++..|.+.+.  +++++|+++.+++..+++...     .+++.++.+|+..+
T Consensus         7 ~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~~~~ii~~D~l~~   79 (252)
T d1qyra_           7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD--QLTVIELDRDLAARLQTHPFL-----GPKLTIYQQDAMTF   79 (252)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCS--CEEEECCCHHHHHHHHTCTTT-----GGGEEEECSCGGGC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCC--ceEEEEeccchhHHHHHHhhh-----ccchhHHhhhhhhh
Confidence            44567788888888888999999999999999999875  999999999999888775433     45899999999876


Q ss_pred             CC
Q 019957          232 PF  233 (333)
Q Consensus       232 p~  233 (333)
                      ++
T Consensus        80 ~~   81 (252)
T d1qyra_          80 NF   81 (252)
T ss_dssp             CH
T ss_pred             cc
Confidence            53

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.20  E-value=4.5e-06  Score=74.57  Aligned_cols=106  Identities=15%  Similarity=0.131  Sum_probs=80.6

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC------------CCCCeEEEEccCCCCCC
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI------------LTSNLALVRADVCRLPF  233 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~------------~~~~i~~~~~d~~~lp~  233 (333)
                      .+.+|||..||+|..+...+...+..+|+..|+|+.+++.++++++.++..            ....+.+...|+..+..
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            467999999999999997766554668999999999999999999877631            01234555666543321


Q ss_pred             -CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          234 -ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       234 -~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                       ....||+|...    -+..|..+|+.+.+.++.||.|.++.-
T Consensus       125 ~~~~~fDvIDiD----PfGs~~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         125 ERHRYFHFIDLD----PFGSPMEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             HSTTCEEEEEEC----CSSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhcCcCCcccCC----CCCCcHHHHHHHHHHhccCCEEEEEec
Confidence             24579998863    356788899999999999999998753

>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592 {Corynebacterium glutamicum [TaxId: 1718]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein Cgl1405/cg1592
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=98.10  E-value=5.3e-07  Score=57.73  Aligned_cols=44  Identities=16%  Similarity=0.159  Sum_probs=37.4

Q ss_pred             ccCeecccCCCccccccCCCCccccccccCceeeCCCCccccCcCCceeeecc
Q 019957           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVI  109 (333)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~  109 (333)
                      ..++++||.|+++|.....         .+.+.|..|+..|++.+|++.++.+
T Consensus         7 LL~iL~CP~ck~~L~~~~~---------~~~Lvc~~~~~~YPI~dgIPvLL~d   50 (59)
T d2jnya1           7 LLEVLACPKDKGPLRYLES---------EQLLVNERLNLAYRIDDGIPVLLID   50 (59)
T ss_dssp             GTCCCBCTTTCCBCEEETT---------TTEEEETTTTEEEEEETTEECCCSS
T ss_pred             HHHHhcCCCCCCEeEEeCC---------CCEEEcCccCccccccCCccccCHH
Confidence            4578999999999976543         2579999999999999999999876

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=7.1e-06  Score=76.88  Aligned_cols=132  Identities=11%  Similarity=-0.002  Sum_probs=91.6

Q ss_pred             CCCCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhC----C--------------CCeEEEEeCCHHHHHHHH
Q 019957          146 SGFPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSG----T--------------YSGVVALDFSENMLRQCY  207 (333)
Q Consensus       146 ~~~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~----~--------------~~~v~g~D~s~~~~~~a~  207 (333)
                      +.++.+...++++.+.+.+.++.+|+|..||+|.++..+.+..    .              ...++|+|+++.+...|+
T Consensus       144 GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~  223 (524)
T d2ar0a1         144 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  223 (524)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             chhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHH
Confidence            4578899999999999998888899999999999987765531    1              125899999999999998


Q ss_pred             HHHHhcCcCC--CCCeEEEEccCCCCC-CCCCCcceEEeccccccC-------------CC-hHHHHHHHHHhccCCcEE
Q 019957          208 DFIKQDNTIL--TSNLALVRADVCRLP-FASGFVDAVHAGAALHCW-------------PS-PSNAVAEISRILRSGGVF  270 (333)
Q Consensus       208 ~~~~~~~~~~--~~~i~~~~~d~~~lp-~~~~~fD~V~~~~vl~h~-------------~d-~~~~l~~~~r~LkpgG~l  270 (333)
                      .++--.+...  .....+..++....+ ....+||+|+++--+.--             .+ ...++..+.+.|++||++
T Consensus       224 ~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~  303 (524)
T d2ar0a1         224 MNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRA  303 (524)
T ss_dssp             HHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred             HHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcE
Confidence            8775544210  011223334433211 234579999986433110             11 135899999999999999


Q ss_pred             EEEEecc
Q 019957          271 VGTTFLR  277 (333)
Q Consensus       271 ~i~~~~~  277 (333)
                      .+..|..
T Consensus       304 aiIlP~~  310 (524)
T d2ar0a1         304 AVVVPDN  310 (524)
T ss_dssp             EEEEEHH
T ss_pred             EEEEehH
Confidence            9988754

>d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779 {Pseudomonas fluorescens [TaxId: 294]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein PFL1779
species: Pseudomonas fluorescens [TaxId: 294]

Probab=98.03  E-value=8.2e-07  Score=56.61  Aligned_cols=44  Identities=20%  Similarity=0.421  Sum_probs=37.3

Q ss_pred             cCeecccCCCccccccCCCCccccccccCceeeCCCCccccCcCCceeeeccc
Q 019957           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS  110 (333)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~  110 (333)
                      .++++||.|+++|.....         .+.+.|..|+..|++.+|++.++.+.
T Consensus         4 L~iL~CP~ck~~L~~~~~---------~~~Lvc~~~~laYPI~dGIPvlL~~e   47 (59)
T d2pk7a1           4 LDILACPICKGPLKLSAD---------KTELISKGAGLAYPIRDGIPVMLESE   47 (59)
T ss_dssp             GGTCCCTTTCCCCEECTT---------SSEEEETTTTEEEEEETTEECCCGGG
T ss_pred             HhheECCCCCCcceEeCC---------CCEEecCCcCccccccCCccccCHHH
Confidence            467999999999976543         25799999999999999999999863

>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Chromobacterium violaceum [TaxId: 536]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Hypothetical protein CV3345
species: Chromobacterium violaceum [TaxId: 536]

Probab=98.03  E-value=8.7e-07  Score=56.60  Aligned_cols=44  Identities=18%  Similarity=0.443  Sum_probs=37.2

Q ss_pred             cCeecccCCCccccccCCCCccccccccCceeeCCCCccccCcCCceeeeccc
Q 019957           58 GDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKDNYLDLTVIS  110 (333)
Q Consensus        58 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~g~~~~~~~~  110 (333)
                      .+++.||.|+++|.....         .+.+.|..|+..|++.+|++.++.+.
T Consensus         5 L~iL~CP~ck~~L~~~~~---------~~~Lvc~~~~l~YPI~dGIPvlL~~e   48 (59)
T d2hf1a1           5 LEILVCPLCKGPLVFDKS---------KDELICKGDRLAFPIKDGIPMMLESE   48 (59)
T ss_dssp             EEECBCTTTCCBCEEETT---------TTEEEETTTTEEEEEETTEECCCGGG
T ss_pred             hhhhcCCCCCCeeeEeCC---------CCEEecCCcCccccccCCccccCHHH
Confidence            467899999999976543         25799999999999999999999863

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.67  E-value=3.1e-05  Score=64.12  Aligned_cols=109  Identities=17%  Similarity=0.150  Sum_probs=67.9

Q ss_pred             cccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEc-cCCCCCCCCCCcceE
Q 019957          163 KSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRA-DVCRLPFASGFVDAV  241 (333)
Q Consensus       163 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~-d~~~lp~~~~~fD~V  241 (333)
                      ...+..+|+|+|||.|.++..++.......+.|+++--...+. -......+   ..-+.+... |+..+  +.+..|+|
T Consensus        63 ~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~---~ni~~~~~~~dv~~l--~~~~~D~v  136 (257)
T d2p41a1          63 LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYG---WNLVRLQSGVDVFFI--PPERCDTL  136 (257)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTT---GGGEEEECSCCTTTS--CCCCCSEE
T ss_pred             CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Cccccccc---cccccchhhhhHHhc--CCCcCCEE
Confidence            4456779999999999999999987655578888873211000 00000000   111233322 22333  36789999


Q ss_pred             EeccccccCCCh-------HHHHHHHHHhccCCcEEEEEEeccc
Q 019957          242 HAGAALHCWPSP-------SNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       242 ~~~~vl~h~~d~-------~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                      +|..+ ++.+++       .++|+-+.+.|+|||-|++-....+
T Consensus       137 lcDm~-ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py  179 (257)
T d2p41a1         137 LCDIG-ESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY  179 (257)
T ss_dssp             EECCC-CCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCC
T ss_pred             EeeCC-CCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCC
Confidence            99865 344544       2567777899999999999877654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.64  E-value=0.00034  Score=54.72  Aligned_cols=102  Identities=17%  Similarity=0.086  Sum_probs=68.6

Q ss_pred             hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--------
Q 019957          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------  232 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------  232 (333)
                      .+..++.+||-+|+|. |.++..+++.. +.+++++|.++.-++.+++.        .....+...+.....        
T Consensus        22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~--------ga~~~~~~~~~~~~~~~~~~~~~   92 (170)
T d1e3ja2          22 AGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNC--------GADVTLVVDPAKEEESSIIERIR   92 (170)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT--------TCSEEEECCTTTSCHHHHHHHHH
T ss_pred             hCCCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHc--------CCcEEEeccccccccchhhhhhh
Confidence            4566788999999995 77877777775 45999999999999998873        222222221111110        


Q ss_pred             -CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEeccc
Q 019957          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRY  278 (333)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~  278 (333)
                       ...+.+|+|+-.-     . ....+..+.+.++++|++++......
T Consensus        93 ~~~g~g~D~vid~~-----g-~~~~~~~a~~~~~~~G~iv~~G~~~~  133 (170)
T d1e3ja2          93 SAIGDLPNVTIDCS-----G-NEKCITIGINITRTGGTLMLVGMGSQ  133 (170)
T ss_dssp             HHSSSCCSEEEECS-----C-CHHHHHHHHHHSCTTCEEEECSCCSS
T ss_pred             cccccCCceeeecC-----C-ChHHHHHHHHHHhcCCceEEEecCCC
Confidence             0124688887432     1 24568889999999999998765443

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.60  E-value=0.0002  Score=55.91  Aligned_cols=131  Identities=14%  Similarity=0.114  Sum_probs=77.2

Q ss_pred             hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CCC
Q 019957          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FAS  235 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~  235 (333)
                      .+..++.+||=+|+|. |.++..+++.. ..+|+++|.++..++.+++.         .-..++...-.+..     ...
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~---------Ga~~~i~~~~~~~~~~~~~~~~   92 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKL---------GASLTVNARQEDPVEAIQRDIG   92 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT---------TCSEEEETTTSCHHHHHHHHHS
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhcc---------CccccccccchhHHHHHHHhhc
Confidence            4567788999999987 77777777775 46999999999999888762         12233332222110     112


Q ss_pred             CCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhh-hccCCCCCHHHHHHHHH
Q 019957          236 GFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI-LQNYNYLTEEEIEDLCT  310 (333)
Q Consensus       236 ~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~~l~~ll~  310 (333)
                      +.+|.|.+...       ...+....+.|++||++++.-........+. ...+.... .......+.++++++++
T Consensus        93 g~~~~i~~~~~-------~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~-~~~~~k~~~i~Gs~~~~~~d~~e~l~  160 (166)
T d1llua2          93 GAHGVLVTAVS-------NSAFGQAIGMARRGGTIALVGLPPGDFPTPI-FDVVLKGLHIAGSIVGTRADLQEALD  160 (166)
T ss_dssp             SEEEEEECCSC-------HHHHHHHHTTEEEEEEEEECCCCSSEEEEEH-HHHHHTTCEEEECCSCCHHHHHHHHH
T ss_pred             CCccccccccc-------chHHHHHHHHhcCCcEEEEEEecCCCccCCH-HHHHhCCcEEEEEeecCHHHHHHHHH
Confidence            23344443322       3468889999999999988653322212222 12222111 12233457777777654

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.57  E-value=5.5e-05  Score=59.54  Aligned_cols=134  Identities=11%  Similarity=0.030  Sum_probs=78.3

Q ss_pred             hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc-CCCC-CCCCCCc
Q 019957          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD-VCRL-PFASGFV  238 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d-~~~l-p~~~~~f  238 (333)
                      ....++.+||-+|+|. |.++..+++.. +.+++++|.++..++.+++.        .-. .++... ..+. ....+.|
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~l--------Ga~-~~i~~~~~~~~~~~~~~~~   92 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKM--------GAD-HYIATLEEGDWGEKYFDTF   92 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH--------TCS-EEEEGGGTSCHHHHSCSCE
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhcc--------CCc-EEeeccchHHHHHhhhccc
Confidence            3566789999999984 77777777663 45999999999988888773        111 233221 1111 1124579


Q ss_pred             ceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhh-hccCCCCCHHHHHHHHH
Q 019957          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI-LQNYNYLTEEEIEDLCT  310 (333)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~~l~~ll~  310 (333)
                      |+|+....-.+-    ..+....+.|+++|++++..........++ ...+.... .......+.++++++++
T Consensus        93 d~vi~~~~~~~~----~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~-~~~~~k~~~i~Gs~~g~~~~~~e~l~  160 (168)
T d1piwa2          93 DLIVVCASSLTD----IDFNIMPKAMKVGGRIVSISIPEQHEMLSL-KPYGLKAVSISYSALGSIKELNQLLK  160 (168)
T ss_dssp             EEEEECCSCSTT----CCTTTGGGGEEEEEEEEECCCCCSSCCEEE-CGGGCBSCEEEECCCCCHHHHHHHHH
T ss_pred             ceEEEEecCCcc----chHHHHHHHhhccceEEEeccccccccccH-HHHHhCCcEEEEEeeCCHHHHHHHHH
Confidence            988764322211    114567889999999988754333222222 11111111 12233457778877664

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.31  E-value=0.0007  Score=52.85  Aligned_cols=134  Identities=13%  Similarity=0.089  Sum_probs=79.7

Q ss_pred             hhcccCCCeEEEEcC-C-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC------
Q 019957          161 YFKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (333)
Q Consensus       161 ~l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (333)
                      ..+..++.+||=+|+ | .|.++..+.+......|+++|.++.-++.+++.        ... .++..+-.+..      
T Consensus        22 ~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~--------Ga~-~~i~~~~~~~~~~~~~~   92 (170)
T d1jvba2          22 KASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA--------GAD-YVINASMQDPLAEIRRI   92 (170)
T ss_dssp             HTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH--------TCS-EEEETTTSCHHHHHHHH
T ss_pred             HhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc--------CCc-eeeccCCcCHHHHHHHH
Confidence            345677889999997 4 466666666654346999999999988888763        111 23332222210      


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhh-hccCCCCCHHHHHHHHH
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI-LQNYNYLTEEEIEDLCT  310 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~~l~~ll~  310 (333)
                      ...+.||+|+-...      -...++.+.+.++|||++++.-........+. ...+.... .......+.+++.++++
T Consensus        93 ~~~~~~d~vid~~g------~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~-~~~~~k~i~i~Gs~~~~~~d~~~~l~  164 (170)
T d1jvba2          93 TESKGVDAVIDLNN------SEKTLSVYPKALAKQGKYVMVGLFGADLHYHA-PLITLSEIQFVGSLVGNQSDFLGIMR  164 (170)
T ss_dssp             TTTSCEEEEEESCC------CHHHHTTGGGGEEEEEEEEECCSSCCCCCCCH-HHHHHHTCEEEECCSCCHHHHHHHHH
T ss_pred             hhcccchhhhcccc------cchHHHhhhhhcccCCEEEEeccccCccccCH-HHHHhCCcEEEEEecCCHHHHHHHHH
Confidence            12356998886432      24557888899999999988754433222222 12222211 12233457777776654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.0016  Score=50.87  Aligned_cols=108  Identities=15%  Similarity=0.080  Sum_probs=70.6

Q ss_pred             hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--------
Q 019957          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------  232 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------  232 (333)
                      .+..++.+||=+|+|. |.++..+++.....+|+++|.++.-++.+++.        . --.++..+-....        
T Consensus        22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~--------G-a~~~~~~~~~~~~~~~~~~~~   92 (171)
T d1pl8a2          22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI--------G-ADLVLQISKESPQEIARKVEG   92 (171)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT--------T-CSEEEECSSCCHHHHHHHHHH
T ss_pred             hCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh--------C-Ccccccccccccccccccccc
Confidence            4566788999999987 66777777765345899999999999988763        1 1122222212110        


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcch
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSL  284 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~  284 (333)
                      -....+|+|+-.-     .. ...++...+.+++||++++..........++
T Consensus        93 ~~g~g~Dvvid~~-----G~-~~~~~~a~~~~~~gG~iv~~G~~~~~~~~~~  138 (171)
T d1pl8a2          93 QLGCKPEVTIECT-----GA-EASIQAGIYATRSGGTLVLVGLGSEMTTVPL  138 (171)
T ss_dssp             HHTSCCSEEEECS-----CC-HHHHHHHHHHSCTTCEEEECSCCCSCCCCCH
T ss_pred             cCCCCceEEEecc-----CC-chhHHHHHHHhcCCCEEEEEecCCCCCccCH
Confidence            0124688887532     22 4468899999999999998765544333333

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.26  E-value=0.0017  Score=50.79  Aligned_cols=130  Identities=18%  Similarity=0.117  Sum_probs=79.0

Q ss_pred             ccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----CCCCC
Q 019957          164 SAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----FASGF  237 (333)
Q Consensus       164 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----~~~~~  237 (333)
                      ..++.+||-+|+|. |.++..+++......++++|.++.-++.+++.         ....++..+-+...     .....
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~---------ga~~~i~~~~~~~~~~~~~~~~~g  100 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL---------GADHVVDARRDPVKQVMELTRGRG  100 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT---------TCSEEEETTSCHHHHHHHHTTTCC
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc---------ccceeecCcccHHHHHHHhhCCCC
Confidence            45688999999987 66666666553345899999999988888863         22234432211111     12346


Q ss_pred             cceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhh-hccCCCCCHHHHHHHHH
Q 019957          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI-LQNYNYLTEEEIEDLCT  310 (333)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~~l~~ll~  310 (333)
                      +|+|+-...     . ...++...+.|++||++++.-.... ...+. ...+.... .......+.++++++++
T Consensus       101 ~d~vid~~g-----~-~~~~~~a~~~l~~~G~iv~~G~~~~-~~~~~-~~l~~k~~~i~Gs~~~~~~d~~~~l~  166 (172)
T d1h2ba2         101 VNVAMDFVG-----S-QATVDYTPYLLGRMGRLIIVGYGGE-LRFPT-IRVISSEVSFEGSLVGNYVELHELVT  166 (172)
T ss_dssp             EEEEEESSC-----C-HHHHHHGGGGEEEEEEEEECCCSSC-CCCCH-HHHHHTTCEEEECCSCCHHHHHHHHH
T ss_pred             ceEEEEecC-----c-chHHHHHHHHHhCCCEEEEEeCccc-ccCCH-HHHHhCCcEEEEEEecCHHHHHHHHH
Confidence            888875432     2 3458889999999999998764332 22222 22222211 12334567788777764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.25  E-value=0.00099  Score=52.65  Aligned_cols=102  Identities=24%  Similarity=0.225  Sum_probs=66.8

Q ss_pred             HhhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC------
Q 019957          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (333)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (333)
                      +.....++.+||-+|+|. |.+...+++.....+|+++|.++..++.+++.        . --.++...-.+..      
T Consensus        22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l--------G-a~~vi~~~~~~~~~~~~~i   92 (182)
T d1vj0a2          22 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI--------G-ADLTLNRRETSVEERRKAI   92 (182)
T ss_dssp             TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT--------T-CSEEEETTTSCHHHHHHHH
T ss_pred             HHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc--------c-ceEEEeccccchHHHHHHH
Confidence            334456788999999986 88888888875334899999999999988763        1 1122221111110      


Q ss_pred             ---CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          233 ---FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       233 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                         .....+|+|+-.-     .. ...++...+.|++||++++....
T Consensus        93 ~~~~~~~g~Dvvid~v-----G~-~~~~~~a~~~l~~~G~iv~~G~~  133 (182)
T d1vj0a2          93 MDITHGRGADFILEAT-----GD-SRALLEGSELLRRGGFYSVAGVA  133 (182)
T ss_dssp             HHHTTTSCEEEEEECS-----SC-TTHHHHHHHHEEEEEEEEECCCC
T ss_pred             HHhhCCCCceEEeecC-----Cc-hhHHHHHHHHhcCCCEEEEEeec
Confidence               1134589887432     22 23478889999999999876543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.24  E-value=0.00094  Score=51.85  Aligned_cols=130  Identities=17%  Similarity=0.151  Sum_probs=75.5

Q ss_pred             hcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC------CC
Q 019957          162 FKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FA  234 (333)
Q Consensus       162 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~  234 (333)
                      .+..++.+||=.|+|. |.....+++.. ..+++++|.++.-++.+++.    |      .+.+.....+..      ..
T Consensus        23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~~----G------a~~~~~~~~~~~~~~~~~~~   91 (168)
T d1rjwa2          23 TGAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKEL----G------ADLVVNPLKEDAAKFMKEKV   91 (168)
T ss_dssp             HTCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT----T------CSEEECTTTSCHHHHHHHHH
T ss_pred             hCCCCCCEEEEeecccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhhc----C------cceecccccchhhhhccccc
Confidence            4566788999999987 66666666664 45899999999998888762    1      222222221110      11


Q ss_pred             CCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhh-hccCCCCCHHHHHHHHH
Q 019957          235 SGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERI-LQNYNYLTEEEIEDLCT  310 (333)
Q Consensus       235 ~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~~l~~ll~  310 (333)
                      .+.+|+|+.. +      -...+....+.|+|||.+++..........+. ...+.... .......+.+++.++++
T Consensus        92 ~~~~~~v~~~-~------~~~~~~~a~~~l~~~G~i~~~g~~~~~~~~~~-~~~~~~~~~i~gs~~~~~~~~~~~l~  160 (168)
T d1rjwa2          92 GGVHAAVVTA-V------SKPAFQSAYNSIRRGGACVLVGLPPEEMPIPI-FDTVLNGIKIIGSIVGTRKDLQEALQ  160 (168)
T ss_dssp             SSEEEEEESS-C------CHHHHHHHHHHEEEEEEEEECCCCSSEEEEEH-HHHHHTTCEEEECCSCCHHHHHHHHH
T ss_pred             CCCceEEeec-C------CHHHHHHHHHHhccCCceEecccccCCCCCCH-HHHHHCCcEEEEEeeCCHHHHHHHHH
Confidence            2334444332 1      24568999999999999998754433222222 11122111 12233467777776654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.19  E-value=0.00081  Score=52.82  Aligned_cols=103  Identities=17%  Similarity=0.107  Sum_probs=69.0

Q ss_pred             HHHhhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-----
Q 019957          158 AQEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-----  231 (333)
Q Consensus       158 ~~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-----  231 (333)
                      +.+..+..++.+||=+|+|. |.++..+++......++++|.++.-++.+++.         .-..++..+-++.     
T Consensus        20 ~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~---------Ga~~~i~~~~~~~~~~i~   90 (174)
T d1f8fa2          20 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL---------GATHVINSKTQDPVAAIK   90 (174)
T ss_dssp             HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH---------TCSEEEETTTSCHHHHHH
T ss_pred             HHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc---------CCeEEEeCCCcCHHHHHH
Confidence            34445677889999999986 66677776664345788999999998888873         1123343332221     


Q ss_pred             CCCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          232 PFASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       232 p~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      .+.++.||+|+-.-     .. ...++...++++|+|++++...
T Consensus        91 ~~t~gg~D~vid~~-----G~-~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          91 EITDGGVNFALEST-----GS-PEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             HHTTSCEEEEEECS-----CC-HHHHHHHHHTEEEEEEEEECCC
T ss_pred             HHcCCCCcEEEEcC-----Cc-HHHHHHHHhcccCceEEEEEee
Confidence            12245799887432     22 4568889999999999988653

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.00065  Score=59.01  Aligned_cols=74  Identities=12%  Similarity=0.091  Sum_probs=56.4

Q ss_pred             cHHHHHHHHHhhccc------CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEE
Q 019957          151 PDEEFKMAQEYFKSA------QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALV  224 (333)
Q Consensus       151 ~~~~~~~~~~~l~~~------~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~  224 (333)
                      ....++.+.+.+...      .+..|||||.|.|.++..+.+.+...+++++|+++...+..++++.      ..++.++
T Consensus        22 d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~------~~~~~ii   95 (322)
T d1i4wa_          22 NPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE------GSPLQIL   95 (322)
T ss_dssp             CHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT------TSSCEEE
T ss_pred             CHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc------CCCcEEE
Confidence            344556666665422      4568999999999999999987533489999999999998887653      3468899


Q ss_pred             EccCCC
Q 019957          225 RADVCR  230 (333)
Q Consensus       225 ~~d~~~  230 (333)
                      .+|+..
T Consensus        96 ~~D~l~  101 (322)
T d1i4wa_          96 KRDPYD  101 (322)
T ss_dssp             CSCTTC
T ss_pred             eCchhh
Confidence            998764

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.0013  Score=51.20  Aligned_cols=134  Identities=13%  Similarity=0.083  Sum_probs=77.2

Q ss_pred             hhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-CCCCCCc
Q 019957          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-PFASGFV  238 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p~~~~~f  238 (333)
                      ..+..++.+||=+|+|. |.++..+++.. ..+++++|.++..++.+++.        . .-.++...-... ....+.+
T Consensus        25 ~~~~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~l--------G-ad~~i~~~~~~~~~~~~~~~   94 (168)
T d1uufa2          25 HWQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKAL--------G-ADEVVNSRNADEMAAHLKSF   94 (168)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH--------T-CSEEEETTCHHHHHTTTTCE
T ss_pred             HhCCCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhcc--------C-CcEEEECchhhHHHHhcCCC
Confidence            34567789999999986 88888888875 45888999998888777663        1 112222111111 1123579


Q ss_pred             ceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHH-hhhccCCCCCHHHHHHHHH
Q 019957          239 DAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRE-RILQNYNYLTEEEIEDLCT  310 (333)
Q Consensus       239 D~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~l~~ll~  310 (333)
                      |+++-.-.-.      ..+....+.++++|++++................+.. .........+..+++++++
T Consensus        95 D~vid~~g~~------~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~~k~~~i~Gs~~~~~~d~~e~l~  161 (168)
T d1uufa2          95 DFILNTVAAP------HNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLD  161 (168)
T ss_dssp             EEEEECCSSC------CCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECCSCCHHHHHHHHH
T ss_pred             ceeeeeeecc------hhHHHHHHHHhcCCEEEEeccCCCCcccccHHHHHHCCcEEEEEeecCHHHHHHHHH
Confidence            9887543211      1267788999999999987543221111111111111 1112334567777777765

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.04  E-value=0.0017  Score=52.04  Aligned_cols=105  Identities=13%  Similarity=0.129  Sum_probs=70.1

Q ss_pred             hhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC-CC------
Q 019957          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR-LP------  232 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~-lp------  232 (333)
                      .....++.+||-+|||. |..+..+++......++++|.++..++.|++.          ....+...... +.      
T Consensus        20 ~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----------Ga~~~~~~~~~~~~~~i~~~   89 (195)
T d1kola2          20 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----------GFEIADLSLDTPLHEQIAAL   89 (195)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----------TCEEEETTSSSCHHHHHHHH
T ss_pred             HhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----------cccEEEeCCCcCHHHHHHHH
Confidence            34567789999999998 66777777665456899999999999988873          22222221111 10      


Q ss_pred             CCCCCcceEEeccccc------c---CCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          233 FASGFVDAVHAGAALH------C---WPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~------h---~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                      .....+|+++-.-..+      +   .......++.+.++++|||.+++.-.
T Consensus        90 t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~  141 (195)
T d1kola2          90 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  141 (195)
T ss_dssp             HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             hCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence            1234688888532211      1   11234679999999999999988754

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.90  E-value=0.0017  Score=50.87  Aligned_cols=101  Identities=13%  Similarity=0.184  Sum_probs=67.9

Q ss_pred             hhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC------C
Q 019957          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------F  233 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~  233 (333)
                      .....++.+||=+|||. |.++..+++.....+|+++|.++.-++.+++.        . -..++...-++..      .
T Consensus        22 ~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l--------G-a~~~i~~~~~~~~~~v~~~t   92 (174)
T d1jqba2          22 LADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY--------G-ATDILNYKNGHIEDQVMKLT   92 (174)
T ss_dssp             HTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH--------T-CSEEECGGGSCHHHHHHHHT
T ss_pred             HhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh--------C-ccccccccchhHHHHHHHHh
Confidence            34567788999999997 88888888875345799999999999888763        1 1222222211110      1


Q ss_pred             CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          234 ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      ....+|+|+-.-.     . ...+++..+.++|+|.+++.-..
T Consensus        93 ~g~G~D~vid~~g-----~-~~~~~~a~~~~~~~G~iv~~G~~  129 (174)
T d1jqba2          93 NGKGVDRVIMAGG-----G-SETLSQAVKMVKPGGIISNINYH  129 (174)
T ss_dssp             TTSCEEEEEECSS-----C-TTHHHHHHHHEEEEEEEEECCCC
T ss_pred             hccCcceEEEccC-----C-HHHHHHHHHHHhcCCEEEEEeec
Confidence            1245998875322     2 23478888999999999986543

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=96.85  E-value=0.0031  Score=55.10  Aligned_cols=146  Identities=14%  Similarity=0.116  Sum_probs=89.0

Q ss_pred             CeEEEEcCCcCHHHH--------HHHHh--------CCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCC--eEEEEccCC
Q 019957          168 GLLVDVSCGSGLFSR--------KFAKS--------GTYSGVVALDFSENMLRQCYDFIKQDNTILTSN--LALVRADVC  229 (333)
Q Consensus       168 ~~vLDiGcG~G~~~~--------~l~~~--------~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~--i~~~~~d~~  229 (333)
                      -+|.|+||.+|.++.        .+.+.        -|..+|+.-|.-.+-....-+.+....- ..++  +.-+.+.+.
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~-~~~~~f~~gvpGSFY  131 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEND-VDGVCFINGVPGSFY  131 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCS-CTTCEEEEEEESCSS
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhcccccc-CCCCeEEEecCCchh
Confidence            469999999998763        22211        2345778888655433333332222110 0111  233445665


Q ss_pred             CCCCCCCCcceEEeccccccCCC---------------------------------hHHHHHHHHHhccCCcEEEEEEec
Q 019957          230 RLPFASGFVDAVHAGAALHCWPS---------------------------------PSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       230 ~lp~~~~~fD~V~~~~vl~h~~d---------------------------------~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      .--|++++.|+++++..||++..                                 ...+|+.=.+-|+|||++++....
T Consensus       132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g  211 (359)
T d1m6ex_         132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG  211 (359)
T ss_dssp             SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred             hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence            54577999999999999999742                                 123666667889999999998877


Q ss_pred             ccCCC---------cchhhHHHHH-------------hhhccCCCCCHHHHHHHHHhCCC
Q 019957          277 RYTSS---------TSLTGRVLRE-------------RILQNYNYLTEEEIEDLCTSCGL  314 (333)
Q Consensus       277 ~~~~~---------~~~~~~~~~~-------------~~~~~~~~~t~~~l~~ll~~aGf  314 (333)
                      +....         ...+...|..             ...-..++.+.+|++..+++.|.
T Consensus       212 r~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gs  271 (359)
T d1m6ex_         212 RRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGS  271 (359)
T ss_dssp             CSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTT
T ss_pred             cCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCC
Confidence            64211         1112222322             11134567889999999988774

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=96.82  E-value=0.0021  Score=53.28  Aligned_cols=92  Identities=16%  Similarity=0.028  Sum_probs=64.3

Q ss_pred             HHHHhhcccC--CCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC------CCCCeEEEEccC
Q 019957          157 MAQEYFKSAQ--GGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI------LTSNLALVRADV  228 (333)
Q Consensus       157 ~~~~~l~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~------~~~~i~~~~~d~  228 (333)
                      .+.+.+....  ..+|||.-+|.|..+..++..|.  +|+++|.++......++.+......      ...+++++.+|.
T Consensus        77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~--~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds  154 (250)
T d2oyra1          77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_dssp             HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCC--EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH
Confidence            3444444332  34899999999999999999875  9999999998766666544332110      023789999997


Q ss_pred             CC-CCCCCCCcceEEeccccccC
Q 019957          229 CR-LPFASGFVDAVHAGAALHCW  250 (333)
Q Consensus       229 ~~-lp~~~~~fD~V~~~~vl~h~  250 (333)
                      .+ +.-...+||+|+.--.+.+-
T Consensus       155 ~~~L~~~~~~~DvIYlDPMFp~~  177 (250)
T d2oyra1         155 LTALTDITPRPQVVYLDPMFPHK  177 (250)
T ss_dssp             HHHSTTCSSCCSEEEECCCCCCC
T ss_pred             HHHHhccCCCCCEEEECCCCccc
Confidence            54 33235679999987766554

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.77  E-value=0.0061  Score=47.60  Aligned_cols=101  Identities=16%  Similarity=0.105  Sum_probs=69.4

Q ss_pred             hhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-------
Q 019957          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-------  232 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-------  232 (333)
                      ..+..++.+||=+|||. |.++..+++......|+.+|.++.-++.+++.         ....++...-.+..       
T Consensus        23 ~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~---------Ga~~~i~~~~~~~~~~~~~~~   93 (174)
T d1e3ia2          23 TAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL---------GATDCLNPRELDKPVQDVITE   93 (174)
T ss_dssp             TSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT---------TCSEEECGGGCSSCHHHHHHH
T ss_pred             hhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh---------CCCcccCCccchhhhhhhHhh
Confidence            34567789999999998 88888888886456899999999988888873         22223322111111       


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCC-cEEEEEEec
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTFL  276 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~~  276 (333)
                      ...+.+|+|+-.-     .. ...+.+..+.+++| |.+++.-..
T Consensus        94 ~~~~G~d~vie~~-----G~-~~~~~~a~~~~~~g~G~~v~vG~~  132 (174)
T d1e3ia2          94 LTAGGVDYSLDCA-----GT-AQTLKAAVDCTVLGWGSCTVVGAK  132 (174)
T ss_dssp             HHTSCBSEEEESS-----CC-HHHHHHHHHTBCTTTCEEEECCCS
T ss_pred             hhcCCCcEEEEec-----cc-chHHHHHHHHhhcCCeEEEecCCC
Confidence            1235688887432     22 44689999999996 999887543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.0045  Score=48.23  Aligned_cols=96  Identities=11%  Similarity=0.057  Sum_probs=65.3

Q ss_pred             HhhcccCCCeEEEEcC-C-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----
Q 019957          160 EYFKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----  232 (333)
Q Consensus       160 ~~l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----  232 (333)
                      +..+..++.+||-.|+ | .|..+..+++.. +.++++++-+++..+.+++.    |     --.++  |..+..     
T Consensus        22 ~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~----G-----a~~vi--~~~~~~~~~~i   89 (174)
T d1yb5a2          22 HSACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQN----G-----AHEVF--NHREVNYIDKI   89 (174)
T ss_dssp             TTSCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT----T-----CSEEE--ETTSTTHHHHH
T ss_pred             HHhCCCCCCEEEEEecccccccccccccccc-Cccccccccccccccccccc----C-----ccccc--ccccccHHHHh
Confidence            3445567889999996 3 477888888775 45899999888877777652    2     12233  222211     


Q ss_pred             ---CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          233 ---FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       233 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                         ...+.+|+|+....       ...++...+.|+|+|+++..-
T Consensus        90 ~~~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2          90 KKYVGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             HHHHCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEECC
T ss_pred             hhhhccCCceEEeeccc-------HHHHHHHHhccCCCCEEEEEe
Confidence               12456999886432       346888899999999998863

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.57  E-value=0.00088  Score=51.94  Aligned_cols=99  Identities=18%  Similarity=0.183  Sum_probs=71.9

Q ss_pred             CCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEec
Q 019957          166 QGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAG  244 (333)
Q Consensus       166 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~  244 (333)
                      ++.+||=||+|. |..+...+... ..+|+.+|.+++.++..+.....       ++.+...+-+.+.-.-...|+|+..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~-------~~~~~~~~~~~l~~~~~~aDivI~a  102 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGS-------RVELLYSNSAEIETAVAEADLLIGA  102 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGG-------GSEEEECCHHHHHHHHHTCSEEEEC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcc-------cceeehhhhhhHHHhhccCcEEEEe
Confidence            577999999997 77777666664 56999999999999888876543       4455544433332122368999987


Q ss_pred             cccccCCChHHHHHHHHHhccCCcEEEE
Q 019957          245 AALHCWPSPSNAVAEISRILRSGGVFVG  272 (333)
Q Consensus       245 ~vl~h~~d~~~~l~~~~r~LkpgG~l~i  272 (333)
                      -.+.--+-|.-+-+++.+.+|||.+++=
T Consensus       103 alipG~~aP~lIt~~mv~~Mk~GSVIVD  130 (168)
T d1pjca1         103 VLVPGRRAPILVPASLVEQMRTGSVIVD  130 (168)
T ss_dssp             CCCTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred             eecCCcccCeeecHHHHhhcCCCcEEEE
Confidence            7766555666667889999999998763

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.42  E-value=0.018  Score=44.71  Aligned_cols=103  Identities=14%  Similarity=0.096  Sum_probs=63.9

Q ss_pred             HhhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC------
Q 019957          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (333)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (333)
                      +.....++.+||=+|||. |.++..+++.....+|+++|.++.-++.+++.         .-..++...-.+..      
T Consensus        21 ~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l---------Ga~~~i~~~~~d~~~~~~~~   91 (174)
T d1p0fa2          21 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL---------GATECLNPKDYDKPIYEVIC   91 (174)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT---------TCSEEECGGGCSSCHHHHHH
T ss_pred             HhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc---------CCcEEEcCCCchhHHHHHHH
Confidence            334567889999999987 56666666654356899999999999999872         22233322111111      


Q ss_pred             -CCCCCcceEEeccccccCCChHHHHHHHHHhcc-CCcEEEEEEecc
Q 019957          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILR-SGGVFVGTTFLR  277 (333)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~  277 (333)
                       ...+.+|+|+-.-     .. ...+......++ ++|.+++.-...
T Consensus        92 ~~~~~G~d~vid~~-----g~-~~~~~~~~~~~~~~~G~~v~vG~~~  132 (174)
T d1p0fa2          92 EKTNGGVDYAVECA-----GR-IETMMNALQSTYCGSGVTVVLGLAS  132 (174)
T ss_dssp             HHTTSCBSEEEECS-----CC-HHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred             HhcCCCCcEEEEcC-----CC-chHHHHHHHHHHHhcCceEEEEEec
Confidence             1234688877532     22 344566666665 568888766443

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.23  E-value=0.008  Score=49.49  Aligned_cols=60  Identities=18%  Similarity=0.240  Sum_probs=51.1

Q ss_pred             CCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH
Q 019957          149 PGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIK  211 (333)
Q Consensus       149 ~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~  211 (333)
                      +.+..+++.+.+... .++..|||.=+|+|..+.+..+.+-  ..+|+|+++..++.|+++++
T Consensus       196 ~kP~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~R--~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         196 PKPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHc
Confidence            455677777777665 4578999999999999999999876  99999999999999999875

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=96.16  E-value=0.057  Score=45.63  Aligned_cols=160  Identities=14%  Similarity=0.041  Sum_probs=92.8

Q ss_pred             HHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCC-C---
Q 019957          157 MAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRL-P---  232 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~l-p---  232 (333)
                      .+.+.+... ...|+.+|||.=.-...+. ..+...++=+|. +.+++.-++.+...+.....+..++..|+.+- .   
T Consensus        81 ~~~~~~~~g-~~qvV~LGaGlDTr~~Rl~-~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L  157 (297)
T d2uyoa1          81 YFNNAVIDG-IRQFVILASGLDSRAYRLD-WPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPAL  157 (297)
T ss_dssp             HHHHHHHTT-CCEEEEETCTTCCHHHHSC-CCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHH
T ss_pred             HHHHHHhhC-CCeEEEeCcccCChhhhcC-CCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHH
Confidence            344444433 3456679999866555542 234456777773 77777777777766543345677888888642 1   


Q ss_pred             ----CCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecccCCCcchh-hHHHHHhh-----------h
Q 019957          233 ----FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLRYTSSTSLT-GRVLRERI-----------L  294 (333)
Q Consensus       233 ----~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~-~~~~~~~~-----------~  294 (333)
                          |....-=++++-+++.+++..  .++|+.+.+...||+.+++............. ........           .
T Consensus       158 ~~~g~d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (297)
T d2uyoa1         158 RSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQ  237 (297)
T ss_dssp             HHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------
T ss_pred             HhcCCCCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecccccchhHHHHHHHHHHHHhhhccccCCChH
Confidence                112223356666778877643  57899999999999999886543321111110 00010000           0


Q ss_pred             -ccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957          295 -QNYNYLTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       295 -~~~~~~t~~~l~~ll~~aGf~~v~~  319 (333)
                       ......+..+...+|+++||++...
T Consensus       238 ~~~~~~~~~~~~~~~l~~~Gw~~~~~  263 (297)
T d2uyoa1         238 ELIYHDENRAVVADWLNRHGWRATAQ  263 (297)
T ss_dssp             CCTTCCTTCCCHHHHHTTTTEEEEEE
T ss_pred             hhccCCCchhhHHHHHHhCCCEEEEe
Confidence             1112234567889999999987653

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.10  E-value=0.018  Score=44.38  Aligned_cols=90  Identities=14%  Similarity=0.215  Sum_probs=60.2

Q ss_pred             eEEEEcCCc-C-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccc
Q 019957          169 LLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (333)
Q Consensus       169 ~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (333)
                      +|+=||||. | .++..|.+.++..+++|+|.+++.++.+++.         ..+.....+....  .+...|+|+..--
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~---------~~~~~~~~~~~~~--~~~~~dlIila~p   71 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL---------GIIDEGTTSIAKV--EDFSPDFVMLSSP   71 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT---------TSCSEEESCGGGG--GGTCCSEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh---------hcchhhhhhhhhh--hccccccccccCC
Confidence            578899996 4 5677888888777999999999999988873         2232333333222  2346798886543


Q ss_pred             cccCCChHHHHHHHHHhccCCcEEEE
Q 019957          247 LHCWPSPSNAVAEISRILRSGGVFVG  272 (333)
Q Consensus       247 l~h~~d~~~~l~~~~r~LkpgG~l~i  272 (333)
                      ..   .-..++.++...++++..++-
T Consensus        72 ~~---~~~~vl~~l~~~~~~~~ii~d   94 (171)
T d2g5ca2          72 VR---TFREIAKKLSYILSEDATVTD   94 (171)
T ss_dssp             HH---HHHHHHHHHHHHSCTTCEEEE
T ss_pred             ch---hhhhhhhhhhccccccccccc
Confidence            22   124667888888888765544

>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: PhnA zinc-binding domain
domain: Hypothetical protein PA0128, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.95  E-value=0.0022  Score=35.96  Aligned_cols=31  Identities=23%  Similarity=0.569  Sum_probs=24.7

Q ss_pred             eecccCCCccccccCCCCccccccccCceeeCCCCccccCc
Q 019957           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (333)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  100 (333)
                      +-.||.|++...-...          ..+.|+.|+|.+...
T Consensus         3 lP~CP~C~seytYedg----------~l~vCPeC~hEW~~~   33 (38)
T d2akla2           3 LPPCPQCNSEYTYEDG----------ALLVCPECAHEWSPN   33 (38)
T ss_dssp             SCCCTTTCCCCCEECS----------SSEEETTTTEEECTT
T ss_pred             CCcCCCCCCcceEcCC----------CEEECCcccCcCCcc
Confidence            4479999998866654          589999999988544

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.74  E-value=0.031  Score=43.39  Aligned_cols=102  Identities=14%  Similarity=0.078  Sum_probs=62.7

Q ss_pred             hhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE-ccCCCCC------
Q 019957          161 YFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRLP------  232 (333)
Q Consensus       161 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~~lp------  232 (333)
                      ..+.+++.+||=+|+|. |.++..+++.....+|+++|.+++-++.|++.        .- ..++. .+.....      
T Consensus        24 ~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~--------GA-~~~in~~~~~~~~~~~~~~   94 (176)
T d1d1ta2          24 TGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV--------GA-TECISPKDSTKPISEVLSE   94 (176)
T ss_dssp             TSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH--------TC-SEEECGGGCSSCHHHHHHH
T ss_pred             hhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc--------CC-cEEECccccchHHHHHHHH
Confidence            34467788999999987 56666777665456899999999999999885        11 22222 1111110      


Q ss_pred             CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          233 FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      .....+|+++-..     ..+......+..+++.+|++++.-..
T Consensus        95 ~~g~G~d~vi~~~-----g~~~~~~~a~~~~~~~~G~~v~vG~~  133 (176)
T d1d1ta2          95 MTGNNVGYTFEVI-----GHLETMIDALASCHMNYGTSVVVGVP  133 (176)
T ss_dssp             HHTSCCCEEEECS-----CCHHHHHHHHTTSCTTTCEEEECSCC
T ss_pred             hccccceEEEEeC-----CchHHHHHHHHHhhcCCeEEEEEEcc
Confidence            1234688776432     23444334444455666898886543

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.68  E-value=0.011  Score=50.33  Aligned_cols=62  Identities=10%  Similarity=0.045  Sum_probs=52.3

Q ss_pred             CCCcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh
Q 019957          148 FPGPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ  212 (333)
Q Consensus       148 ~~~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~  212 (333)
                      .+.+..+++.+...... ++..|||.=||+|..+.++.+.+-  ..+|+|+++..++.+++++.+
T Consensus       233 t~kP~~L~~rlI~~~s~-~gdiVlDpF~GSGTT~~AA~~lgR--~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         233 ARFPAKLPEFFIRMLTE-PDDLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             SCCCTHHHHHHHHHHCC-TTCEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSC
T ss_pred             CcCchHHHHHhhhhccc-CCCEEEecCCCCcHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHHHh
Confidence            34567777777776654 678999999999999999999876  999999999999999987654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.31  E-value=0.054  Score=41.61  Aligned_cols=100  Identities=14%  Similarity=0.119  Sum_probs=64.4

Q ss_pred             HhhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC------
Q 019957          160 EYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (333)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (333)
                      +..+..++.+||=+|+|. |.++..+++......|+++|.++.-++.+++.        . --.++...-....      
T Consensus        22 ~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l--------G-a~~~i~~~~~~~~~~~~~~   92 (176)
T d2fzwa2          22 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF--------G-ATECINPQDFSKPIQEVLI   92 (176)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH--------T-CSEEECGGGCSSCHHHHHH
T ss_pred             HhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh--------C-CcEEEeCCchhhHHHHHHH
Confidence            345567889999999875 56666666664356899999999888888763        1 1222222111111      


Q ss_pred             -CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                       ...+.+|+|+-.-.      ....++.+..++++||.+++..
T Consensus        93 ~~~~~g~D~vid~~G------~~~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2          93 EMTDGGVDYSFECIG------NVKVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             HHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             HHcCCCCcEeeecCC------CHHHHHHHHHhhcCCceeEEEE
Confidence             11356898886432      2456788899999997776543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.30  E-value=0.16  Score=38.94  Aligned_cols=104  Identities=15%  Similarity=0.118  Sum_probs=64.0

Q ss_pred             HHhhcccCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEE-ccCCCCC----
Q 019957          159 QEYFKSAQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVR-ADVCRLP----  232 (333)
Q Consensus       159 ~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~-~d~~~lp----  232 (333)
                      .+..+.+++.+||=+|+|. |.....+++......|+++|.++.-++.+++.         .....+. .+..+.-    
T Consensus        21 ~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~---------Ga~~~i~~~~~~~~~~~~~   91 (176)
T d2jhfa2          21 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV---------GATECVNPQDYKKPIQEVL   91 (176)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT---------TCSEEECGGGCSSCHHHHH
T ss_pred             HHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh---------CCeeEEecCCchhHHHHHH
Confidence            3345567889999999976 44555555555456999999999998888773         2222222 1222210    


Q ss_pred             --CCCCCcceEEeccccccCCChHHHHHHHHHhccCC-cEEEEEEecc
Q 019957          233 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTFLR  277 (333)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~~~  277 (333)
                        ...+.+|+|+-...     . ...++.....+++| |.+++.....
T Consensus        92 ~~~~~~G~D~vid~~G-----~-~~~~~~a~~~~~~~~g~~~~~~~~~  133 (176)
T d2jhfa2          92 TEMSNGGVDFSFEVIG-----R-LDTMVTALSCCQEAYGVSVIVGVPP  133 (176)
T ss_dssp             HHHTTSCBSEEEECSC-----C-HHHHHHHHHHBCTTTCEEEECSCCC
T ss_pred             HHHhcCCCCEEEecCC-----c-hhHHHHHHHHHhcCCcceEEecCCC
Confidence              12357898875433     2 34467777788776 5555554433

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.18  E-value=0.036  Score=45.95  Aligned_cols=60  Identities=15%  Similarity=0.191  Sum_probs=51.3

Q ss_pred             CcHHHHHHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh
Q 019957          150 GPDEEFKMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQ  212 (333)
Q Consensus       150 ~~~~~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~  212 (333)
                      .+..+++.+.+... .++..|||.=+|+|..+.+..+.+-  +++|+|+++...+.+++++..
T Consensus       192 kP~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~lgR--~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         192 KPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGR--NSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             CCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTC--EEEEEESSTHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHhCC--eEEEEeCCHHHHHHHHHHHHH
Confidence            55666777776654 4688999999999999999999887  999999999999999999875

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.12  E-value=0.099  Score=40.44  Aligned_cols=101  Identities=11%  Similarity=-0.032  Sum_probs=67.8

Q ss_pred             HHHHhhcccCCCeEEEEcCCc--CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--
Q 019957          157 MAQEYFKSAQGGLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (333)
Q Consensus       157 ~~~~~l~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--  232 (333)
                      .+.+..+.+++.+||=.|++.  |..+..+++.. ..+|++++-+++..+.+++.         ..-.++..+-++..  
T Consensus        20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~---------Ga~~vi~~~~~~~~~~   89 (182)
T d1v3va2          20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQI---------GFDAAFNYKTVNSLEE   89 (182)
T ss_dssp             HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT---------TCSEEEETTSCSCHHH
T ss_pred             HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHhh---------hhhhhcccccccHHHH
Confidence            344455667889999888755  67777888875 45999999998887777662         22223332222211  


Q ss_pred             ----CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          233 ----FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       233 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                          ...+.+|+|+-.-     .  ...+++..+.|+++|.+++.-
T Consensus        90 ~~~~~~~~Gvd~v~D~v-----G--~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          90 ALKKASPDGYDCYFDNV-----G--GEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             HHHHHCTTCEEEEEESS-----C--HHHHHHHGGGEEEEEEEEECC
T ss_pred             HHHHhhcCCCceeEEec-----C--chhhhhhhhhccCCCeEEeec
Confidence                1235689887532     2  356899999999999999864

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.11  E-value=0.014  Score=45.54  Aligned_cols=107  Identities=17%  Similarity=0.099  Sum_probs=65.2

Q ss_pred             cCCCeEEEEcCCc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcC---CCCCeEEEEccCCCCC--C-----
Q 019957          165 AQGGLLVDVSCGS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTI---LTSNLALVRADVCRLP--F-----  233 (333)
Q Consensus       165 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~---~~~~i~~~~~d~~~lp--~-----  233 (333)
                      -++.+||=||+|. |..+...+... .+.|+++|.++..++..++.....-..   ......-..+.+.++.  +     
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence            3577999999998 66666666654 569999999999888887743221000   0000000000010100  0     


Q ss_pred             -----CCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEE
Q 019957          234 -----ASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVG  272 (333)
Q Consensus       234 -----~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i  272 (333)
                           .-...|+|+....+.--+-|.-+-+++.+.+|||.+++=
T Consensus       106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVD  149 (183)
T d1l7da1         106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIID  149 (183)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEE
T ss_pred             HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEE
Confidence                 012589999887777666666667889999999998753

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.04  E-value=0.036  Score=43.02  Aligned_cols=99  Identities=18%  Similarity=0.105  Sum_probs=63.6

Q ss_pred             HHhhcccCCCeEEEEcC-C-cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC----
Q 019957          159 QEYFKSAQGGLLVDVSC-G-SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----  232 (333)
Q Consensus       159 ~~~l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----  232 (333)
                      .+..+..++.+||=.|. | .|.++..+++.. +.++++++-+++..+.+++.    |    .. ..+...-.++.    
T Consensus        18 ~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~~----G----a~-~vi~~~~~~~~~~v~   87 (183)
T d1pqwa_          18 CEVGRLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRL----G----VE-YVGDSRSVDFADEIL   87 (183)
T ss_dssp             HTTSCCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTT----C----CS-EEEETTCSTHHHHHH
T ss_pred             HHHhCCCCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccccc----c----cc-ccccCCccCHHHHHH
Confidence            33445567889998874 3 477777777764 44888888888777766642    2    11 22222212211    


Q ss_pred             --CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          233 --FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                        .....||+|+....       ...++++.++|+++|+++..-
T Consensus        88 ~~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~G  124 (183)
T d1pqwa_          88 ELTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIELG  124 (183)
T ss_dssp             HHTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEECS
T ss_pred             HHhCCCCEEEEEeccc-------chHHHHHHHHhcCCCEEEEEc
Confidence              12457999997543       245788899999999998863

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.90  E-value=0.071  Score=40.52  Aligned_cols=87  Identities=7%  Similarity=0.078  Sum_probs=56.0

Q ss_pred             eEEEEcCCc--CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcceEEeccc
Q 019957          169 LLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDAVHAGAA  246 (333)
Q Consensus       169 ~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~V~~~~v  246 (333)
                      +|.=||+|.  +.++..+.+.+.  +|+++|.+++.++.+++.         ..+.....+.+.+    ...|+|+..--
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~---------~~~~~~~~~~~~~----~~~DiIilavp   66 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVER---------QLVDEAGQDLSLL----QTAKIIFLCTP   66 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHT---------TSCSEEESCGGGG----TTCSEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHh---------hccceeeeecccc----cccccccccCc
Confidence            566789885  356777777776  999999999888877652         1222223333332    36798886432


Q ss_pred             cccCCChHHHHHHHHHhccCCcEEEEE
Q 019957          247 LHCWPSPSNAVAEISRILRSGGVFVGT  273 (333)
Q Consensus       247 l~h~~d~~~~l~~~~r~LkpgG~l~i~  273 (333)
                      ..   .-..+++++...++++-.++-.
T Consensus        67 ~~---~~~~vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          67 IQ---LILPTLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             HH---HHHHHHHHHGGGSCTTCEEEEC
T ss_pred             Hh---hhhhhhhhhhhhcccccceeec
Confidence            11   1246788888888887766543

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.074  Score=40.94  Aligned_cols=99  Identities=10%  Similarity=0.049  Sum_probs=65.0

Q ss_pred             HhhcccCCCeEEEEcCCc--CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC-----
Q 019957          160 EYFKSAQGGLLVDVSCGS--GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP-----  232 (333)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp-----  232 (333)
                      +..+..++.+||=.|+|.  |.++..+++.. +.+|++++.+++-.+.+++.    |     .-.++...-+++.     
T Consensus        22 ~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~l----G-----a~~vi~~~~~d~~~~v~~   91 (179)
T d1qora2          22 KTYEIKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKA----G-----AWQVINYREEDLVERLKE   91 (179)
T ss_dssp             TTSCCCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH----T-----CSEEEETTTSCHHHHHHH
T ss_pred             HHhCCCCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhc----C-----CeEEEECCCCCHHHHHHH
Confidence            334456788999997664  67778887764 45999999999988888763    1     1123322212211     


Q ss_pred             -CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEe
Q 019957          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                       -....+|+|+....-       ..+......++++|.+++...
T Consensus        92 ~t~g~g~d~v~d~~g~-------~~~~~~~~~l~~~G~~v~~g~  128 (179)
T d1qora2          92 ITGGKKVRVVYDSVGR-------DTWERSLDCLQRRGLMVSFGN  128 (179)
T ss_dssp             HTTTCCEEEEEECSCG-------GGHHHHHHTEEEEEEEEECCC
T ss_pred             HhCCCCeEEEEeCccH-------HHHHHHHHHHhcCCeeeeccc
Confidence             124578988764432       246788999999999877543

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.075  Score=45.27  Aligned_cols=126  Identities=13%  Similarity=0.103  Sum_probs=77.2

Q ss_pred             CCeEEEEcCCcCHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---CCCCCcceEE
Q 019957          167 GGLLVDVSCGSGLFSRKFAKSGTYSG-VVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASGFVDAVH  242 (333)
Q Consensus       167 ~~~vLDiGcG~G~~~~~l~~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~V~  242 (333)
                      +.+|+|+-||.|.+...+...|...+ +.++|+++.+.+..+.+        .+...++.+|+.++.   ++...+|+++
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n--------~~~~~~~~~di~~~~~~~~~~~~~Dll~   73 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN--------FPHTQLLAKTIEGITLEEFDRLSFDMIL   73 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH--------CTTSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHH--------CCCCCcccCchhhCCHhHcCCCCccEEE
Confidence            35899999999999998888875333 67999999988877765        445567778887764   2233689998


Q ss_pred             eccccccC---------CChH-HHHHHHHHhc-----cCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHH
Q 019957          243 AGAALHCW---------PSPS-NAVAEISRIL-----RSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIED  307 (333)
Q Consensus       243 ~~~vl~h~---------~d~~-~~l~~~~r~L-----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~  307 (333)
                      ...--..+         .|+. .++-++.+++     ||.  +++.+....     + ..           .-..+.+..
T Consensus        74 ggpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk--~~i~ENV~~-----l-~~-----------~~~~~~i~~  134 (343)
T d1g55a_          74 MSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKG-----F-EV-----------SSTRDLLIQ  134 (343)
T ss_dssp             ECCC------------------CHHHHHHHHGGGCSSCCS--EEEEEEETT-----G-GG-----------SHHHHHHHH
T ss_pred             eecccccccccccccccccccccccchhhhhHhhhcCCCc--eeeeeccCC-----c-cc-----------chhhHHHHh
Confidence            75433322         2332 2344444544     353  444443332     0 00           012357888


Q ss_pred             HHHhCCCcEEEE
Q 019957          308 LCTSCGLTNYTS  319 (333)
Q Consensus       308 ll~~aGf~~v~~  319 (333)
                      .|++.|+.+...
T Consensus       135 ~l~~~GY~v~~~  146 (343)
T d1g55a_         135 TIENCGFQYQEF  146 (343)
T ss_dssp             HHHHTTEEEEEE
T ss_pred             hhhcccccccee
Confidence            899999987553

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.46  E-value=0.33  Score=36.88  Aligned_cols=101  Identities=17%  Similarity=0.150  Sum_probs=60.2

Q ss_pred             HhhcccCCCeEEEEcCCcC-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC------
Q 019957          160 EYFKSAQGGLLVDVSCGSG-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------  232 (333)
Q Consensus       160 ~~l~~~~~~~vLDiGcG~G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------  232 (333)
                      +..+.+++.+||=+|+|.+ .....+++......|+++|.+++-++.+++.         .--.++...-++..      
T Consensus        22 ~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~---------GAd~~in~~~~~~~~~~~~~   92 (175)
T d1cdoa2          22 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF---------GATDFVNPNDHSEPISQVLS   92 (175)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT---------TCCEEECGGGCSSCHHHHHH
T ss_pred             HhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc---------CCcEEEcCCCcchhHHHHHH
Confidence            3445678899999999984 4444455554356899999999988888872         22233332211111      


Q ss_pred             -CCCCCcceEEeccccccCCChHHHHHHHHHhccCC-cEEEEEEe
Q 019957          233 -FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSG-GVFVGTTF  275 (333)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~~~  275 (333)
                       ...+.+|+|+-.-.     . ...+......+++| |++++...
T Consensus        93 ~~~~~G~d~vid~~G-----~-~~~~~~a~~~~~~g~~~~~~~g~  131 (175)
T d1cdoa2          93 KMTNGGVDFSLECVG-----N-VGVMRNALESCLKGWGVSVLVGW  131 (175)
T ss_dssp             HHHTSCBSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             hhccCCcceeeeecC-----C-HHHHHHHHHHhhCCCcceeEEEe
Confidence             11346888864332     2 34466677776665 55444433

>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.014  Score=36.33  Aligned_cols=33  Identities=12%  Similarity=0.292  Sum_probs=23.5

Q ss_pred             ccCeecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      ....+.||.|++.......        ..|.+.|..||.+-
T Consensus         8 ~~~~~~Cp~Cgs~~ii~D~--------~~Ge~vC~~CG~Vl   40 (58)
T d1dl6a_           8 ALPRVTCPNHPDAILVEDY--------RAGDMICPECGLVV   40 (58)
T ss_dssp             CCSCCSBTTBSSSCCEECS--------SSCCEECTTTCCEE
T ss_pred             cccccCCCCCCCCCEEEEC--------CCCcEecccCCCEe
Confidence            4567899999997543321        13789999999753

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=94.18  E-value=0.13  Score=44.64  Aligned_cols=47  Identities=11%  Similarity=0.116  Sum_probs=34.8

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhC-------CCCeEEEEeCCHHHHHHHHHHHHh
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSG-------TYSGVVALDFSENMLRQCYDFIKQ  212 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~-------~~~~v~g~D~s~~~~~~a~~~~~~  212 (333)
                      ....|+|+|+|+|.++..+.+..       ...+++.+|.|+...+.-++.+..
T Consensus        79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~  132 (365)
T d1zkda1          79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  132 (365)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc
Confidence            34579999999999988776542       234689999999876666665543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.17  E-value=0.33  Score=37.24  Aligned_cols=101  Identities=11%  Similarity=0.009  Sum_probs=64.2

Q ss_pred             hcccCCCeEEEEcCC--cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC-CC-CCCCCCC
Q 019957          162 FKSAQGGLLVDVSCG--SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV-CR-LPFASGF  237 (333)
Q Consensus       162 l~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~-~~-lp~~~~~  237 (333)
                      -...++.+||=-|.+  .|.++..+++.. +.+|+++.-+++-.+.+++.    |   ...+.-...+. +. .....+.
T Consensus        27 g~~~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~l----G---a~~vi~~~~~~~~~~~~~~~~g   98 (176)
T d1xa0a2          27 GLTPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVL----G---AKEVLAREDVMAERIRPLDKQR   98 (176)
T ss_dssp             TCCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHT----T---CSEEEECC---------CCSCC
T ss_pred             CCCCCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhc----c---cceeeecchhHHHHHHHhhccC
Confidence            344557789999864  468888888775 56899999888877777763    1   11111111111 11 1123568


Q ss_pred             cceEEeccccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          238 VDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       238 fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      +|+|+-.-.       ...+....+.|++||+++......
T Consensus        99 vD~vid~vg-------g~~~~~~l~~l~~~Griv~~G~~~  131 (176)
T d1xa0a2          99 WAAAVDPVG-------GRTLATVLSRMRYGGAVAVSGLTG  131 (176)
T ss_dssp             EEEEEECST-------TTTHHHHHHTEEEEEEEEECSCCS
T ss_pred             cCEEEEcCC-------chhHHHHHHHhCCCceEEEeeccc
Confidence            998875432       224888999999999999877654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.14  E-value=0.019  Score=44.47  Aligned_cols=92  Identities=20%  Similarity=0.157  Sum_probs=60.4

Q ss_pred             hcccCCCeEEEEcC-Cc-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---CCCC
Q 019957          162 FKSAQGGLLVDVSC-GS-GLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---FASG  236 (333)
Q Consensus       162 l~~~~~~~vLDiGc-G~-G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~  236 (333)
                      .+..++.+||=.|. |. |.+...+++.. +.++++++.++..++.+++.    |    .. ..+  |..+..   -..+
T Consensus        23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~l----G----a~-~~i--~~~~~~~~~~~~~   90 (171)
T d1iz0a2          23 AQARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLAL----G----AE-EAA--TYAEVPERAKAWG   90 (171)
T ss_dssp             TTCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHT----T----CS-EEE--EGGGHHHHHHHTT
T ss_pred             hCCCCCCEEEEEeccccchhhhhhhhccc-cccccccccccccccccccc----c----cc-eee--ehhhhhhhhhccc
Confidence            45567889999885 43 77888888775 45999999988877777652    2    11 111  222211   1235


Q ss_pred             CcceEEeccccccCCChHHHHHHHHHhccCCcEEEEE
Q 019957          237 FVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT  273 (333)
Q Consensus       237 ~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~  273 (333)
                      .+|+|+-..     .+   .+....+.|+++|+++..
T Consensus        91 g~D~v~d~~-----G~---~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          91 GLDLVLEVR-----GK---EVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             SEEEEEECS-----CT---THHHHHTTEEEEEEEEEC
T ss_pred             ccccccccc-----ch---hHHHHHHHHhcCCcEEEE
Confidence            699988532     11   257788899999999875

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.57  E-value=0.014  Score=35.10  Aligned_cols=41  Identities=17%  Similarity=0.381  Sum_probs=24.0

Q ss_pred             ccCeecccCCCccccc-cCCCCccccccccCceeeCCCCccc
Q 019957           57 EGDLFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        57 ~~~~l~CP~C~~~l~~-~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      ..+++.||.|++.-.. ......+.++-..-.+.|.+||+.+
T Consensus         6 ~T~~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~W   47 (50)
T d1tfia_           6 QTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             ECCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             ccCCEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCee
Confidence            3578999999994211 0000111222233478999999976

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=93.36  E-value=0.12  Score=42.20  Aligned_cols=108  Identities=17%  Similarity=0.099  Sum_probs=70.8

Q ss_pred             cCCCeEEEEcCCcCHHHHHHHHhC----------------------------------------CCCeEEEEeCCHHHHH
Q 019957          165 AQGGLLVDVSCGSGLFSRKFAKSG----------------------------------------TYSGVVALDFSENMLR  204 (333)
Q Consensus       165 ~~~~~vLDiGcG~G~~~~~l~~~~----------------------------------------~~~~v~g~D~s~~~~~  204 (333)
                      ..+..++|--||+|.++..++...                                        ....++|.|+++.+++
T Consensus        49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~  128 (249)
T d1o9ga_          49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  128 (249)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence            345579999999999988765421                                        0124679999999998


Q ss_pred             HHH---HHHHhcCcCCCCCeEEEEccCCCCC-C----CCCCcceEEecccccc-CC----Ch----HHHHHHHHHhccCC
Q 019957          205 QCY---DFIKQDNTILTSNLALVRADVCRLP-F----ASGFVDAVHAGAALHC-WP----SP----SNAVAEISRILRSG  267 (333)
Q Consensus       205 ~a~---~~~~~~~~~~~~~i~~~~~d~~~lp-~----~~~~fD~V~~~~vl~h-~~----d~----~~~l~~~~r~Lkpg  267 (333)
                      .|+   +++...|+  ...+.+.+.|+.+.. .    .....++|+++=-.-+ +.    .+    ..+...+.+++...
T Consensus       129 ~A~~~r~n~~~Agl--~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~  206 (249)
T d1o9ga_         129 AARRLRERLTAEGG--ALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH  206 (249)
T ss_dssp             HHHHHHHHHHHTTS--SCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHcCC--CceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCC
Confidence            884   57778876  678999999986542 1    2346789998643321 21    12    34455566777555


Q ss_pred             cEEEEEE
Q 019957          268 GVFVGTT  274 (333)
Q Consensus       268 G~l~i~~  274 (333)
                      ..++++.
T Consensus       207 s~~~it~  213 (249)
T d1o9ga_         207 AVIAVTD  213 (249)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEeC
Confidence            5555544

>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Archaeon Thermococcus celer [TaxId: 2264]

Probab=93.12  E-value=0.023  Score=35.20  Aligned_cols=42  Identities=21%  Similarity=0.305  Sum_probs=23.7

Q ss_pred             cCeecccCCCcccccc-CCCCccccccccCceeeCCCCccccC
Q 019957           58 GDLFSCPICYEPLIRK-GPTGLTLGAIYRSGFKCRKCDKTYSS   99 (333)
Q Consensus        58 ~~~l~CP~C~~~l~~~-~~~~~~~~~~~~~~~~C~~C~~~~~~   99 (333)
                      ...+.||.|++.-... .....+..+-..-.+.|.+||+.|..
T Consensus        13 t~~~~CpkC~~~~a~~~~~QtRsaDE~~T~fy~C~~Cg~~wre   55 (57)
T d1qypa_          13 TTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS   55 (57)
T ss_dssp             EEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred             cccCCCCCCCCCceEEEEeecccccCCCeEEEEeCCCCCccee
Confidence            3457899999942111 00011122233347889999998743

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=93.05  E-value=0.023  Score=36.30  Aligned_cols=29  Identities=24%  Similarity=0.575  Sum_probs=22.2

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCcccc
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYS   98 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~   98 (333)
                      +.+.||.|+.+|....           +.++|..|...|.
T Consensus         1 m~~~CP~C~~eL~~~~-----------~~~~C~~C~~~~~   29 (71)
T d2jnea1           1 MELHCPQCQHVLDQDN-----------GHARCRSCGEFIE   29 (71)
T ss_dssp             CCCBCSSSCSBEEEET-----------TEEEETTTCCEEE
T ss_pred             CCCcCCCccCcccccC-----------CCEehhhhhhhhe
Confidence            3578999999987654           4788888887773

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=92.77  E-value=0.4  Score=36.09  Aligned_cols=137  Identities=11%  Similarity=0.044  Sum_probs=76.5

Q ss_pred             HHHHHhhcccCCCeEEEEcCCc-CH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF  233 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~  233 (333)
                      +...+.+....+.+||=||.|. |. .+..|...+ ..+++.+..+..-.+...+.+   +      ...  .++.++.-
T Consensus        13 ~la~~~~~~l~~~~ilviGaG~~g~~v~~~L~~~g-~~~i~v~nRt~~ka~~l~~~~---~------~~~--~~~~~~~~   80 (159)
T d1gpja2          13 ELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRG-VRAVLVANRTYERAVELARDL---G------GEA--VRFDELVD   80 (159)
T ss_dssp             HHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHC-CSEEEEECSSHHHHHHHHHHH---T------CEE--CCGGGHHH
T ss_pred             HHHHHHhCCcccCeEEEECCCHHHHHHHHHHHhcC-CcEEEEEcCcHHHHHHHHHhh---h------ccc--ccchhHHH
Confidence            4555566656788999999875 43 344555555 347999998855433332221   1      222  23334331


Q ss_pred             CCCCcceEEecccccc-CCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHh
Q 019957          234 ASGFVDAVHAGAALHC-WPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTS  311 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h-~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~  311 (333)
                      .-..+|+|++...-.+ +-+ ...++...+.-+.+..+++.+...+....+....      ......++.+++..+.++
T Consensus        81 ~l~~~Divi~atss~~~ii~-~~~i~~~~~~r~~~~~~~iiDlavPr~vd~~v~~------~~~v~l~~ld~l~~~~~~  152 (159)
T d1gpja2          81 HLARSDVVVSATAAPHPVIH-VDDVREALRKRDRRSPILIIDIANPRDVEEGVEN------IEDVEVRTIDDLRVIARE  152 (159)
T ss_dssp             HHHTCSEEEECCSSSSCCBC-HHHHHHHHHHCSSCCCEEEEECCSSCSBCTTGGG------STTEEEEEHHHHHHHHHH
T ss_pred             HhccCCEEEEecCCCCcccc-HhhhHHHHHhcccCCCeEEEeecCCCCcChhhhc------cCCeEEEeHHHHHHHHHH
Confidence            2247999998655333 222 3345555444455666777777655333333111      134566788888877654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.77  E-value=0.53  Score=38.31  Aligned_cols=81  Identities=17%  Similarity=0.116  Sum_probs=59.6

Q ss_pred             cCCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---------
Q 019957          165 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------  232 (333)
Q Consensus       165 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------  232 (333)
                      .+++++|=.|++.|   ..+..|++.|.  +|+++|.+++.++.+.+.+...+.  ..++.++.+|+.+..         
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~--~~~~~~~~~Dls~~~~v~~~v~~~   83 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGY--PGTLIPYRCDLSNEEDILSMFSAI   83 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--SSEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CceEEEEEccCCCHHHHHHHHHHH
Confidence            34778999998876   35566677765  999999999999888888777652  346888899997632         


Q ss_pred             -CCCCCcceEEecccccc
Q 019957          233 -FASGFVDAVHAGAALHC  249 (333)
Q Consensus       233 -~~~~~fD~V~~~~vl~h  249 (333)
                       -.-+..|+++.+....+
T Consensus        84 ~~~~g~iD~lVnnAg~~~  101 (257)
T d1xg5a_          84 RSQHSGVDICINNAGLAR  101 (257)
T ss_dssp             HHHHCCCSEEEECCCCCC
T ss_pred             HHhcCCCCEEEecccccC
Confidence             11257999987765544

>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=91.73  E-value=0.027  Score=36.49  Aligned_cols=32  Identities=22%  Similarity=0.608  Sum_probs=23.0

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCccccC
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~   99 (333)
                      ....||.|+..-.....         .|++.|..|+..|.-
T Consensus        26 ~ky~Cp~Cgk~~vkR~a---------~GIW~C~kC~~~~AG   57 (73)
T d1vqoz1          26 EDHACPNCGEDRVDRQG---------TGIWQCSYCDYKFTG   57 (73)
T ss_dssp             SCBCCSSSSCSCEEEEE---------TTEEEETTTCCEEEC
T ss_pred             CCccCCCCCCceeEEEE---------EEEEECCCCCCEEeC
Confidence            35689999986433222         379999999988743

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.33  E-value=0.061  Score=34.88  Aligned_cols=40  Identities=18%  Similarity=0.223  Sum_probs=23.4

Q ss_pred             eecccCCCccccc-cCCCCccccccccCceeeCCCCccccC
Q 019957           60 LFSCPICYEPLIR-KGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (333)
Q Consensus        60 ~l~CP~C~~~l~~-~~~~~~~~~~~~~~~~~C~~C~~~~~~   99 (333)
                      ...||.|++.-.. ......+..+-..-.+.|.+|||.|..
T Consensus        23 ~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~   63 (72)
T d1twfi2          23 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTS   63 (72)
T ss_dssp             CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEEC
T ss_pred             CCCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCccc
Confidence            4689999984211 111111222333347899999999854

>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=91.25  E-value=0.032  Score=36.12  Aligned_cols=32  Identities=16%  Similarity=0.501  Sum_probs=22.6

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCccccC
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~   99 (333)
                      ....||.|+..-.....         .|++.|..|+..|.-
T Consensus        26 ~ky~Cp~Cgk~~vkR~a---------~GIW~C~kC~~~~AG   57 (73)
T d1jj2y_          26 KKHKCPVCGFKKLKRAG---------TGIWMCGHCGYKIAG   57 (73)
T ss_dssp             SCBCCSSSCCSCEEEEE---------TTEEEETTTCCEEEC
T ss_pred             CCccCCCCCCCceEEEE---------EEEEECCCCCCEEeC
Confidence            35689999975433221         379999999988743

>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.13  E-value=0.047  Score=32.78  Aligned_cols=30  Identities=23%  Similarity=0.429  Sum_probs=20.5

Q ss_pred             eecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           60 LFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        60 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      ...||.|++......        ...|.+.|.+||.+-
T Consensus         5 ~~~Cp~Cgs~~iv~D--------~~~Ge~vC~~CG~Vi   34 (50)
T d1pfta_           5 QKVCPACESAELIYD--------PERGEIVCAKCGYVI   34 (50)
T ss_dssp             CCSCTTTSCCCEEEE--------TTTTEEEESSSCCBC
T ss_pred             cccCcCCCCCcEEEE--------CCCCeEecccCCcEe
Confidence            347999998643322        123789999999753

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.94  E-value=1.2  Score=34.10  Aligned_cols=100  Identities=13%  Similarity=0.026  Sum_probs=60.6

Q ss_pred             HHhhcccCC--CeEEEEc--CCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--
Q 019957          159 QEYFKSAQG--GLLVDVS--CGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--  232 (333)
Q Consensus       159 ~~~l~~~~~--~~vLDiG--cG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--  232 (333)
                      .+..+.+++  .+||=.|  .|.|.++..+++......+++++-+++......+.+        ..-.++...-+++.  
T Consensus        21 ~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~--------gad~vi~~~~~~~~~~   92 (187)
T d1vj1a2          21 QEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL--------GFDAAVNYKTGNVAEQ   92 (187)
T ss_dssp             HHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS--------CCSEEEETTSSCHHHH
T ss_pred             HHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc--------cceEEeeccchhHHHH
Confidence            334334444  6799877  356899999999763446777777766554443321        11222322212211  


Q ss_pred             ---CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEE
Q 019957          233 ---FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGT  273 (333)
Q Consensus       233 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~  273 (333)
                         ..++.+|+|+-.-.       ...+....+.|+++|+++..
T Consensus        93 ~~~~~~~GvDvv~D~vG-------g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2          93 LREACPGGVDVYFDNVG-------GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             HHHHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHhccCceEEEecCC-------chhHHHHhhhccccccEEEe
Confidence               12356999974332       34688999999999999875

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=90.63  E-value=0.47  Score=39.57  Aligned_cols=68  Identities=18%  Similarity=0.308  Sum_probs=51.7

Q ss_pred             eEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC-CCCcceEEeccc
Q 019957          169 LLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAGAA  246 (333)
Q Consensus       169 ~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~~v  246 (333)
                      +|||+=||.|.+..-+...|. ..+.++|+++.+.+..+.+        .+ -.++.+|+.++... -...|+++...-
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~-~~~~a~e~d~~a~~~~~~N--------~~-~~~~~~Di~~~~~~~~~~~dll~~g~P   70 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESN--------HS-AKLIKGDISKISSDEFPKCDGIIGGPP   70 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTC-EEEEEEECCHHHHHHHHHH--------CC-SEEEESCTTTSCGGGSCCCSEEEECCC
T ss_pred             eEEEeCcCcCHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHH--------CC-CCCccCChhhCCHhHcccccEEeeccc
Confidence            699999999999999988874 3567999999888777765        22 35677899887532 246899987533

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=90.31  E-value=1.2  Score=37.08  Aligned_cols=127  Identities=14%  Similarity=0.088  Sum_probs=76.8

Q ss_pred             CCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCC-CCCcceEEec
Q 019957          166 QGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFA-SGFVDAVHAG  244 (333)
Q Consensus       166 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~-~~~fD~V~~~  244 (333)
                      .+.+|||+=||.|.+...|.+.|. ..+.++|+++.+++..+.+...          ...+|+.++... -..+|+++..
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~-~~v~a~e~d~~a~~~~~~N~~~----------~~~~Di~~~~~~~~~~~Dll~gg   78 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGE----------KPEGDITQVNEKTIPDHDILCAG   78 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSC----------CCBSCGGGSCGGGSCCCSEEEEE
T ss_pred             CCCeEEEECccccHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHCCC----------CCcCchhcCchhhcceeeeeecc
Confidence            467999999999999999998884 3467799999999888876532          124677665422 2468999874


Q ss_pred             cccccC---------CChH----HHHHHHHHhccCCcEEEEEEecccCCCcchhhHHHHHhhhccCCCCCHHHHHHHHHh
Q 019957          245 AALHCW---------PSPS----NAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRVLRERILQNYNYLTEEEIEDLCTS  311 (333)
Q Consensus       245 ~vl~h~---------~d~~----~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~  311 (333)
                      .--.-+         .|+.    ..+-++.+.++|.=  ++.+....     + ..        ....-..+.+...|++
T Consensus        79 pPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~~--~~lENV~~-----~-~~--------~~~~~~~~~i~~~l~~  142 (327)
T d2c7pa1          79 FPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKV--VFMENVKN-----F-AS--------HDNGNTLEVVKNTMNE  142 (327)
T ss_dssp             CCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSE--EEEEEEGG-----G-GT--------GGGGHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhcCCcccchhHHHHHHHHHhccCCcE--Eecccchh-----h-hh--------hccchhhHHhhhHHHh
Confidence            332211         2222    22333445567753  33332221     0 00        0011123677888999


Q ss_pred             CCCcEEEE
Q 019957          312 CGLTNYTS  319 (333)
Q Consensus       312 aGf~~v~~  319 (333)
                      .|+.+...
T Consensus       143 lGY~~~~~  150 (327)
T d2c7pa1         143 LDYSFHAK  150 (327)
T ss_dssp             TTBCCEEE
T ss_pred             cCCcceee
Confidence            99976543

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.22  E-value=0.044  Score=34.38  Aligned_cols=43  Identities=19%  Similarity=0.412  Sum_probs=26.0

Q ss_pred             cCcccccCeecccCCCccccccCCCCccccccccCceeeCCCCcc
Q 019957           52 QTLELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKT   96 (333)
Q Consensus        52 ~~~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~   96 (333)
                      .........+.||.|+........  ..+-....+.|+|..|+..
T Consensus         6 ~rd~~~~~~y~Cp~C~~~ys~Lda--~~L~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_           6 ERDSTNRASFKCPVCSSTFTDLEA--NQLFDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             SSSCCSSSEEECSSSCCEEEHHHH--HHHEETTTTEEBCSSSCCB
T ss_pred             hhccccCCceECCCCCCCcchhhH--HHhcCcCCCeEEecCCCCE
Confidence            344456678999999995322110  0111223479999999865

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.13  E-value=0.43  Score=34.42  Aligned_cols=85  Identities=9%  Similarity=0.182  Sum_probs=52.2

Q ss_pred             eEEEEcCCc-CH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC----CCCCCcceEE
Q 019957          169 LLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----FASGFVDAVH  242 (333)
Q Consensus       169 ~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----~~~~~fD~V~  242 (333)
                      +|+=+|+|. |. ++..|.+.+.  +|+.+|.+++.++.+.+.         .+..++.+|..+..    ..-...|.++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~--~v~vid~d~~~~~~~~~~---------~~~~vi~Gd~~~~~~l~~~~i~~a~~vv   70 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH--DIVLIDIDKDICKKASAE---------IDALVINGDCTKIKTLEDAGIEDADMYI   70 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH---------CSSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC--CcceecCChhhhhhhhhh---------hhhhhccCcccchhhhhhcChhhhhhhc
Confidence            567777754 43 2334444454  899999999988877653         25678899987642    1234678877


Q ss_pred             eccccccCCChH--HHHHHHHHhccCCcE
Q 019957          243 AGAALHCWPSPS--NAVAEISRILRSGGV  269 (333)
Q Consensus       243 ~~~vl~h~~d~~--~~l~~~~r~LkpgG~  269 (333)
                      +..     .+..  ..+..+.+.+.+.-.
T Consensus        71 ~~t-----~~d~~N~~~~~~~k~~~~~~i   94 (132)
T d1lssa_          71 AVT-----GKEEVNLMSSLLAKSYGINKT   94 (132)
T ss_dssp             ECC-----SCHHHHHHHHHHHHHTTCCCE
T ss_pred             ccC-----CcHHHHHHHHHHHHHcCCceE
Confidence            642     2232  234445566766643

>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain
family: Methionyl-tRNA synthetase (MetRS), Zn-domain
domain: Methionyl-tRNA synthetase (MetRS), Zn-domain
species: Pyrococcus abyssi [TaxId: 29292]

Probab=89.57  E-value=0.13  Score=28.05  Aligned_cols=26  Identities=23%  Similarity=0.657  Sum_probs=19.1

Q ss_pred             cccCCCccccccCCCCccccccccCceeeCCCCccccCcC
Q 019957           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD  101 (333)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~  101 (333)
                      .||.|+..-..              .-.|..||+.|...+
T Consensus         4 ~CP~C~~~~a~--------------GDqCe~CG~~~~p~e   29 (35)
T d1rqga3           4 TCPYCGAEDQK--------------GDQCEVCGRPLTPEI   29 (35)
T ss_dssp             BCSSSCCSCCC--------------TTTCSSSCCCCCTTS
T ss_pred             ECCCCCCCccc--------------CcchhhcCCccCHHH
Confidence            59999876533              347999999985554

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=89.47  E-value=0.41  Score=36.36  Aligned_cols=96  Identities=14%  Similarity=0.104  Sum_probs=61.4

Q ss_pred             CCCeEEEEcC--CcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC--CCC-CCCCCCcce
Q 019957          166 QGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV--CRL-PFASGFVDA  240 (333)
Q Consensus       166 ~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~--~~l-p~~~~~fD~  240 (333)
                      ++.+||=-|+  |-|.++..+++.. ..+|+++.-+++-.+.+++.        .....+...|.  ... ....+.+|+
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~~l--------Gad~vi~~~~~~~~~~~~~~~~gvd~   93 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQL--------GASEVISREDVYDGTLKALSKQQWQG   93 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHH--------TCSEEEEHHHHCSSCCCSSCCCCEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHHhh--------cccceEeccchhchhhhcccCCCceE
Confidence            4556887774  3478888888874 45999999888777777663        11221221222  111 123467898


Q ss_pred             EEeccccccCCChHHHHHHHHHhccCCcEEEEEEecc
Q 019957          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      |+-.     +.  ...+.+..+.|+++|++++.-...
T Consensus        94 vid~-----vg--g~~~~~~~~~l~~~G~iv~~G~~~  123 (167)
T d1tt7a2          94 AVDP-----VG--GKQLASLLSKIQYGGSVAVSGLTG  123 (167)
T ss_dssp             EEES-----CC--THHHHHHHTTEEEEEEEEECCCSS
T ss_pred             EEec-----Cc--HHHHHHHHHHhccCceEEEeeccC
Confidence            7643     22  345889999999999998865443

>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain
family: Methionyl-tRNA synthetase (MetRS), Zn-domain
domain: Methionyl-tRNA synthetase (MetRS), Zn-domain
species: Escherichia coli [TaxId: 562]

Probab=88.78  E-value=0.098  Score=28.56  Aligned_cols=26  Identities=38%  Similarity=0.871  Sum_probs=19.0

Q ss_pred             cccCCCccccccCCCCccccccccCceeeCCCCccccCcC
Q 019957           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSKD  101 (333)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~  101 (333)
                      .||.|+..-..              .-.|..||+.|...+
T Consensus         4 ~CP~C~~~~a~--------------GDqCe~CG~~~~p~e   29 (35)
T d1pfva3           4 TCPKCKSPDQY--------------GDNCEVCGATYSPTE   29 (35)
T ss_dssp             ECTTTCCSSEE--------------TTBCTTTCCBCCGGG
T ss_pred             ECCCCCCcccc--------------cccHHHcCCcCCHHH
Confidence            59999886533              337999999985443

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=87.62  E-value=0.46  Score=41.44  Aligned_cols=51  Identities=10%  Similarity=0.092  Sum_probs=41.1

Q ss_pred             ccCCCeEEEEcCCcCHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHhcC
Q 019957          164 SAQGGLLVDVSCGSGLFSRKFAKSG--TYSGVVALDFSENMLRQCYDFIKQDN  214 (333)
Q Consensus       164 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~g~D~s~~~~~~a~~~~~~~~  214 (333)
                      ..++..++|||+-.|.++..+....  ...+|+++|+++...+..++++..++
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~  262 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYT  262 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcc
Confidence            4567799999999999888776542  23589999999999999998877543

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=87.54  E-value=4.5  Score=30.44  Aligned_cols=94  Identities=15%  Similarity=0.114  Sum_probs=59.9

Q ss_pred             CCCeEEEEcC--CcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCC--CCCCCCCcceE
Q 019957          166 QGGLLVDVSC--GSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCR--LPFASGFVDAV  241 (333)
Q Consensus       166 ~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~--lp~~~~~fD~V  241 (333)
                      ++++||=.|.  |.|..+..+++.. +.+|+++.-+++..+.+++.    |     --.++.-+-.+  -.+....+|.|
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~~~~~~l----G-----ad~vi~~~~~~~~~~l~~~~~~~v  100 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKSL----G-----ASRVLPRDEFAESRPLEKQVWAGA  100 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHH----T-----EEEEEEGGGSSSCCSSCCCCEEEE
T ss_pred             CCCcEEEEEccccchHHHHHHHHHc-CCCeEEEecchhHHHHHHhh----c-----cccccccccHHHHHHHHhhcCCee
Confidence            3457776664  3467888888875 55999999998887777653    1     12223222211  12345567876


Q ss_pred             EeccccccCCChHHHHHHHHHhccCCcEEEEEEec
Q 019957          242 HAGAALHCWPSPSNAVAEISRILRSGGVFVGTTFL  276 (333)
Q Consensus       242 ~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  276 (333)
                      +     +.+.  ...+.+..+.|+++|+++..-..
T Consensus       101 v-----D~Vg--g~~~~~~l~~l~~~Griv~~G~~  128 (177)
T d1o89a2         101 I-----DTVG--DKVLAKVLAQMNYGGCVAACGLA  128 (177)
T ss_dssp             E-----ESSC--HHHHHHHHHTEEEEEEEEECCCT
T ss_pred             E-----EEcc--hHHHHHHHHHhccccceEeeccc
Confidence            5     2222  34688999999999999987543

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: IBR domain
domain: Ring finger protein 31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.65  E-value=0.41  Score=30.87  Aligned_cols=35  Identities=20%  Similarity=0.472  Sum_probs=25.2

Q ss_pred             cccccCeecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           54 LELEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        54 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      ..-+...-.||.|+..+.....         ...+.|+.|++.|
T Consensus        12 l~~~~~~k~CP~C~~~~~~~~~---------~~~~~C~~C~~~f   46 (73)
T d2ct7a1          12 LMRDPKFLWCAQCSFGFIYERE---------QLEATCPQCHQTF   46 (73)
T ss_dssp             CCSCCCEECCSSSCCCEECCCS---------CSCEECTTTCCEE
T ss_pred             HHHCCCCCCCCCCCCEeEECCC---------CCEEEcCCCCCeE
Confidence            3445567789999998765432         2478899999887

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.47  E-value=1.3  Score=35.61  Aligned_cols=84  Identities=15%  Similarity=0.200  Sum_probs=59.7

Q ss_pred             CCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC----------C
Q 019957          167 GGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------F  233 (333)
Q Consensus       167 ~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----------~  233 (333)
                      ++++|=-|++.|   ..+..+++.|.  +|+.+|.+++.++.+.+.+.....  ..++.++.+|+.+..          -
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~   78 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFE--PQKTLFIQCDVADQQQLRDTFRKVVD   78 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSC--GGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcC--CCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            667888887765   34556666665  999999999888887776654321  347888999997742          0


Q ss_pred             CCCCcceEEeccccccCCChH
Q 019957          234 ASGFVDAVHAGAALHCWPSPS  254 (333)
Q Consensus       234 ~~~~fD~V~~~~vl~h~~d~~  254 (333)
                      .-+..|+++.+..+....+..
T Consensus        79 ~~G~iDilVnnAg~~~~~~~~   99 (254)
T d2gdza1          79 HFGRLDILVNNAGVNNEKNWE   99 (254)
T ss_dssp             HHSCCCEEEECCCCCCSSSHH
T ss_pred             HcCCcCeecccccccccccch
Confidence            125799999888777666554

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.20  E-value=2.1  Score=34.48  Aligned_cols=105  Identities=17%  Similarity=0.218  Sum_probs=70.5

Q ss_pred             cCCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEE-eCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--------
Q 019957          165 AQGGLLVDVSCGSG---LFSRKFAKSGTYSGVVAL-DFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------  232 (333)
Q Consensus       165 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~-D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------  232 (333)
                      ..++++|=.|++.|   ..+..|++.|.  +|+.. +.++..++...+.+...|    .++.++.+|+.+..        
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~~~~~~~~~~~~~~~g----~~~~~~~~D~~~~~~v~~~~~~   77 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG----AQGVAIQADISKPSEVVALFDK   77 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHHcC----CCceEecCCCCCHHHHHHHHHH
Confidence            45778898886655   45666777765  77764 566777777777777653    47888999997632        


Q ss_pred             --CCCCCcceEEeccccccCCCh-------------------HHHHHHHHHhccCCcEEEEEEe
Q 019957          233 --FASGFVDAVHAGAALHCWPSP-------------------SNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 --~~~~~fD~V~~~~vl~h~~d~-------------------~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                        ..-+..|+++.+..+.+..+.                   ...++.+...|+.+|.+++...
T Consensus        78 ~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s  141 (259)
T d1ja9a_          78 AVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSS  141 (259)
T ss_dssp             HHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             HHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccc
Confidence              123579999987776654432                   1346667777877777666543

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.72  E-value=1.7  Score=35.41  Aligned_cols=104  Identities=13%  Similarity=0.156  Sum_probs=69.4

Q ss_pred             CCeE-EEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC--------C-
Q 019957          167 GGLL-VDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP--------F-  233 (333)
Q Consensus       167 ~~~v-LDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp--------~-  233 (333)
                      +++| |==|++.|   ..+..|++.+ ...|+..+.+++.++.+.+.++..+    .++.++.+|+.+..        . 
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~-g~~Vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dvs~~~sv~~~~~~~~   76 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLF-SGDVVLTARDVTRGQAAVQQLQAEG----LSPRFHQLDIDDLQSIRALRDFLR   76 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHS-SSEEEEEESSHHHHHHHHHHHHHTT----CCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEEEecCCHHHHHHHHHHHH
Confidence            4455 44455544   2344556552 3499999999999988888887753    47889999997753        1 


Q ss_pred             -CCCCcceEEeccccccCC---Ch----------------HHHHHHHHHhccCCcEEEEEEe
Q 019957          234 -ASGFVDAVHAGAALHCWP---SP----------------SNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       234 -~~~~fD~V~~~~vl~h~~---d~----------------~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                       .-+..|+++.+..+.+..   +.                ..+.+.+...|+++|.++....
T Consensus        77 ~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          77 KEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             HHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             HhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence             125799999877654321   11                1346677788899999877653

>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Putative zinc binding domain
domain: Hypothetical UPF0222 protein MGC4549
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.29  E-value=0.12  Score=34.44  Aligned_cols=41  Identities=17%  Similarity=0.321  Sum_probs=24.7

Q ss_pred             ccCeecccCCCccccccCCCCccccccccCceeeCCCCccccCc
Q 019957           57 EGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (333)
Q Consensus        57 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  100 (333)
                      ....|.||.|++.-.....-   ......+.+.|..||..|...
T Consensus        20 L~t~F~CPfCnh~~sV~vk~---dkk~~~g~l~C~vCg~~~~~~   60 (85)
T d1wiia_          20 LETQFTCPFCNHEKSCDVKM---DRARNTGVISCTVCLEEFQTP   60 (85)
T ss_dssp             CSSCCCCTTTCCSSCEEEEE---ETTTTEEEEEESSSCCEEEEE
T ss_pred             CCceEcCCCCCCCCeEEEEE---EecCCEEEEEEecCCCeEEec
Confidence            44679999999732111100   001113689999999988554

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=84.70  E-value=1.8  Score=33.02  Aligned_cols=104  Identities=13%  Similarity=0.118  Sum_probs=56.6

Q ss_pred             HHHhhcccCCCeEEEEcCC---cCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEcc---CCCC
Q 019957          158 AQEYFKSAQGGLLVDVSCG---SGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRAD---VCRL  231 (333)
Q Consensus       158 ~~~~l~~~~~~~vLDiGcG---~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d---~~~l  231 (333)
                      +.+.....++.+||=+.+|   .|..+..+++.. +.+++++--+.+..+...+.+++.|     --.++..+   ..+.
T Consensus        20 l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~-Ga~vI~~v~~~~~~~~~~~~~~~lG-----ad~vi~~~~~~~~~~   93 (189)
T d1gu7a2          20 LTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELG-----ATQVITEDQNNSREF   93 (189)
T ss_dssp             HHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHT-----CSEEEEHHHHHCGGG
T ss_pred             HHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhc-CCeEEEEEecccccchHHhhhhhcc-----ccEEEeccccchhHH
Confidence            3344455677778777333   366777777764 4488777434333333333333333     11223222   1111


Q ss_pred             C--------CCCCCcceEEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          232 P--------FASGFVDAVHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       232 p--------~~~~~fD~V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      .        ...+.+|+|+-.     +.  ...+....+.|+++|+++..-
T Consensus        94 ~~~v~~~~~~~g~~vdvv~D~-----vg--~~~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2          94 GPTIKEWIKQSGGEAKLALNC-----VG--GKSSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             HHHHHHHHHHHTCCEEEEEES-----SC--HHHHHHHHHTSCTTCEEEECC
T ss_pred             HHHHHHHHhhccCCceEEEEC-----CC--cchhhhhhhhhcCCcEEEEEC
Confidence            0        013458888742     22  334678889999999998753

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.38  E-value=10  Score=31.55  Aligned_cols=120  Identities=13%  Similarity=0.173  Sum_probs=70.1

Q ss_pred             HHHHHhhcccCCCeEEEEcCCcCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcC------------------cCC
Q 019957          156 KMAQEYFKSAQGGLLVDVSCGSGLFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDN------------------TIL  217 (333)
Q Consensus       156 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~------------------~~~  217 (333)
                      ..+.+++...+...|+-+|||.=.....+....++..++=+|. ++.++.=++.+.+..                  ...
T Consensus        86 ~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~  164 (328)
T d1rjda_          86 AAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLID  164 (328)
T ss_dssp             HHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEE
T ss_pred             HHHHHHHHHCCCcEEEEeCCccchHHHHhhccCCCcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccCC
Confidence            3445555555566899999999887777877666444455554 333322222222110                  001


Q ss_pred             CCCeEEEEccCCCCC---------CCCCCcceEEeccccccCCCh--HHHHHHHHHhccCCcEEEEEEecc
Q 019957          218 TSNLALVRADVCRLP---------FASGFVDAVHAGAALHCWPSP--SNAVAEISRILRSGGVFVGTTFLR  277 (333)
Q Consensus       218 ~~~i~~~~~d~~~lp---------~~~~~fD~V~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~  277 (333)
                      ..+..++.+|+.++.         +....-=++++-.|+.+++..  .++|+.+.+.. |+|.+++.++..
T Consensus       165 s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f-~~~~~i~YE~i~  234 (328)
T d1rjda_         165 QGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIG  234 (328)
T ss_dssp             CSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECC
T ss_pred             CCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhC-CCceEEEeccCC
Confidence            346788888987642         111223367777888887543  46777777766 456677767653

>d2k4xa1 g.41.8.8 (A:1-55) Ribosomal protein S27ae {Thermoplasma acidophilum [TaxId: 2303]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein S27a
domain: Ribosomal protein S27ae
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=83.35  E-value=0.29  Score=29.38  Aligned_cols=35  Identities=20%  Similarity=0.363  Sum_probs=22.7

Q ss_pred             cccCeecccCCCccccccCCCCccccccccCceeeCCCCccccC
Q 019957           56 LEGDLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSS   99 (333)
Q Consensus        56 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~   99 (333)
                      +....-.||.||........         .+.+.|-.||.....
T Consensus        14 v~r~~k~CP~CG~GvFmA~H---------~dR~~CGKCgyTefk   48 (55)
T d2k4xa1          14 LVRKHRFCPRCGPGVFLAEH---------ADRYSCGRCGYTEFK   48 (55)
T ss_dssp             CCCSSCCCTTTTTTCCCEEC---------SSEEECTTTCCCEEC
T ss_pred             EEEecCcCcCCCCcEEeeec---------CCCccccCCcccEEe
Confidence            44445579999875432222         158899999887643

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=83.02  E-value=5.3  Score=31.61  Aligned_cols=101  Identities=17%  Similarity=0.153  Sum_probs=65.8

Q ss_pred             CCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC----------
Q 019957          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (333)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----------  232 (333)
                      .++++|=-|++.|   ..+..+++.|.  +|+.+|.+++.++...+.+..       +...+.+|+.+..          
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~   73 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLGA-------NGKGLMLNVTDPASIESVLEKIR   73 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGG-------GEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhCC-------CCcEEEEEecCHHHhhhhhhhhh
Confidence            4667888887765   35566677765  999999999888877765533       5677888987632          


Q ss_pred             CCCCCcceEEeccccccCCCh-------------------HHHHHHHHHhc--cCCcEEEEEEe
Q 019957          233 FASGFVDAVHAGAALHCWPSP-------------------SNAVAEISRIL--RSGGVFVGTTF  275 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~~d~-------------------~~~l~~~~r~L--kpgG~l~i~~~  275 (333)
                      -.-+..|+++.+....+....                   -...+.+...|  +.+|.++....
T Consensus        74 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS  137 (243)
T d1q7ba_          74 AEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGS  137 (243)
T ss_dssp             HHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             cccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecc
Confidence            112579999877655443321                   12345555665  34688777653

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.37  E-value=3.4  Score=32.87  Aligned_cols=75  Identities=20%  Similarity=0.174  Sum_probs=53.7

Q ss_pred             CCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC------CCCC
Q 019957          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP------FASG  236 (333)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp------~~~~  236 (333)
                      .++++|=.|++.|   ..+..|++.|.  +|+.+|.+++.++...+.        ..++..+..|+.+..      -.-+
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~--------~~~~~~~~~Dv~d~~~v~~~~~~~g   75 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRE--------CPGIEPVCVDLGDWEATERALGSVG   75 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH--------STTCEEEECCTTCHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHh--------cCCCeEEEEeCCCHHHHHHHHHHhC
Confidence            4778999998776   45666777765  999999999877766553        446778888986632      1235


Q ss_pred             CcceEEeccccccC
Q 019957          237 FVDAVHAGAALHCW  250 (333)
Q Consensus       237 ~fD~V~~~~vl~h~  250 (333)
                      +.|+++.+..+.+.
T Consensus        76 ~iDilVnnAg~~~~   89 (244)
T d1pr9a_          76 PVDLLVNNAAVALL   89 (244)
T ss_dssp             CCCEEEECCCCCCC
T ss_pred             CceEEEeccccccc
Confidence            79999876655443

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.26  E-value=2.1  Score=29.61  Aligned_cols=90  Identities=12%  Similarity=0.052  Sum_probs=54.5

Q ss_pred             cCCCeEEEEcCCc-C-HHHHHHHHhCCCCeEEEEeC--CHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCCCCCCcce
Q 019957          165 AQGGLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDF--SENMLRQCYDFIKQDNTILTSNLALVRADVCRLPFASGFVDA  240 (333)
Q Consensus       165 ~~~~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~--s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~  240 (333)
                      ..+.+||=||.|. | .-+..+.+.+.  +++.++.  ++.....+.          ..++.+....+..-.+.  .+|+
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll~~ga--~v~v~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~dl~--~~~l   75 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLLEAGA--RLTVNALTFIPQFTVWAN----------EGMLTLVEGPFDETLLD--SCWL   75 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTB--EEEEEESSCCHHHHHHHT----------TTSCEEEESSCCGGGGT--TCSE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEeccCChHHHHHHh----------cCCceeeccCCCHHHhC--CCcE
Confidence            3577999999987 3 23445555554  6666654  444433332          34678887766554332  5677


Q ss_pred             EEeccccccCCChHHHHHHHHHhccCCcEEEEEE
Q 019957          241 VHAGAALHCWPSPSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       241 V~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      |+...      +....-.++.+..|+.|.++-..
T Consensus        76 v~~at------~d~~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          76 AIAAT------DDDTVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             EEECC------SCHHHHHHHHHHHHHTTCEEEET
T ss_pred             EeecC------CCHHHHHHHHHHHHHcCCEEEeC
Confidence            76643      22344457777888888886543

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=81.70  E-value=0.91  Score=36.79  Aligned_cols=84  Identities=13%  Similarity=0.017  Sum_probs=48.6

Q ss_pred             EEEEccCCCC--CCCCCCcceEEeccc----cc-------cCCChHHHHHHHHHhccCCcEEEEEEecccCCCcchhhHH
Q 019957          222 ALVRADVCRL--PFASGFVDAVHAGAA----LH-------CWPSPSNAVAEISRILRSGGVFVGTTFLRYTSSTSLTGRV  288 (333)
Q Consensus       222 ~~~~~d~~~l--p~~~~~fD~V~~~~v----l~-------h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~  288 (333)
                      .|+.+|..+.  .++++++|+|+..=-    ..       ++......+.++.|+|||+|.+++..........      
T Consensus         6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~------   79 (279)
T d1eg2a_           6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEA------   79 (279)
T ss_dssp             EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCT------
T ss_pred             eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccc------
Confidence            3555665432  245778888887321    11       1122356789999999999999986543321100      


Q ss_pred             HHHhhhccCCCCCHHHHHHHHHhCCCcEEEE
Q 019957          289 LRERILQNYNYLTEEEIEDLCTSCGLTNYTS  319 (333)
Q Consensus       289 ~~~~~~~~~~~~t~~~l~~ll~~aGf~~v~~  319 (333)
                              ........+..+++..||.....
T Consensus        80 --------~~~~~~~~~~~~~~~~~~~~~~~  102 (279)
T d1eg2a_          80 --------GSGDLISIISHMRQNSKMLLANL  102 (279)
T ss_dssp             --------TBCCHHHHHHHHHHHCCCEEEEE
T ss_pred             --------cccchhhHHHHHHhccCceeeee
Confidence                    11112244567788889876543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=81.53  E-value=4.9  Score=29.76  Aligned_cols=98  Identities=16%  Similarity=0.136  Sum_probs=55.4

Q ss_pred             CeEEEEcCCc-C-HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccC---CCCCCCCCCcceEE
Q 019957          168 GLLVDVSCGS-G-LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADV---CRLPFASGFVDAVH  242 (333)
Q Consensus       168 ~~vLDiGcG~-G-~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~---~~lp~~~~~fD~V~  242 (333)
                      ++|-=||+|. | .++..|++.|.  +|+.+|.++..++..++.-.....  .+.........   .++.-.-...|+|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~aD~ii   77 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAE--GPGLAGTAHPDLLTSDIGLAVKDADVIL   77 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEE--SSSCCEEECCSEEESCHHHHHTTCSEEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCCchh--hhhhhhhhhhhhhhhhhHhHhcCCCEEE
Confidence            4677899997 3 45666677765  999999999887776653110000  00111110000   00000013578888


Q ss_pred             eccccccCCChHHHHHHHHHhccCCcEEEE
Q 019957          243 AGAALHCWPSPSNAVAEISRILRSGGVFVG  272 (333)
Q Consensus       243 ~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i  272 (333)
                      ..--   ......+++++...|+++-.+++
T Consensus        78 i~v~---~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          78 IVVP---AIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             ECSC---GGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             EEEc---hhHHHHHHHHhhhccCCCCEEEE
Confidence            6421   11236788999999999886553

>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: RNA polymerase subunits
family: RBP12 subunit of RNA polymerase II
domain: RBP12 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.42  E-value=0.39  Score=27.70  Aligned_cols=29  Identities=17%  Similarity=0.512  Sum_probs=22.0

Q ss_pred             CeecccCCCccccccCCCCccccccccCceeeCCCCccc
Q 019957           59 DLFSCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTY   97 (333)
Q Consensus        59 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~   97 (333)
                      ..+.|-.|+........          ..++|.+||+.-
T Consensus         3 v~YiCgeCg~~~~l~~~----------d~irCreCG~RI   31 (46)
T d1twfl_           3 LKYICAECSSKLSLSRT----------DAVRCKDCGHRI   31 (46)
T ss_dssp             CCEECSSSCCEECCCTT----------STTCCSSSCCCC
T ss_pred             eEEEcccCCCceEeCCC----------CcEEeccCCcEE
Confidence            35679999997765543          488999999864

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.30  E-value=3.4  Score=32.94  Aligned_cols=79  Identities=19%  Similarity=0.175  Sum_probs=60.0

Q ss_pred             CCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC----------
Q 019957          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLP----------  232 (333)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp----------  232 (333)
                      .|+++|=-|++.|   .++..+++.|.  +|+.+|.+++.++...+.+...    ..++..+.+|+.+..          
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~----~~~~~~~~~Dvs~~~~v~~~~~~i~   79 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGL----GAKVHTFVVDCSNREDIYSSAKKVK   79 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEeeCCCHHHHHHHHHHHH
Confidence            4678888898876   46677777776  9999999999888888877664    457889999998742          


Q ss_pred             CCCCCcceEEeccccccC
Q 019957          233 FASGFVDAVHAGAALHCW  250 (333)
Q Consensus       233 ~~~~~fD~V~~~~vl~h~  250 (333)
                      -..+..|+++.+..+.+.
T Consensus        80 ~~~g~idilinnag~~~~   97 (244)
T d1yb1a_          80 AEIGDVSILVNNAGVVYT   97 (244)
T ss_dssp             HHTCCCSEEEECCCCCCC
T ss_pred             HHcCCCceeEeecccccc
Confidence            124578998887666544

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=81.00  E-value=5.1  Score=28.12  Aligned_cols=90  Identities=11%  Similarity=0.052  Sum_probs=51.1

Q ss_pred             eEEEEcCCc-CH-HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCCC----CCCCcceEE
Q 019957          169 LLVDVSCGS-GL-FSRKFAKSGTYSGVVALDFSENMLRQCYDFIKQDNTILTSNLALVRADVCRLPF----ASGFVDAVH  242 (333)
Q Consensus       169 ~vLDiGcG~-G~-~~~~l~~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~V~  242 (333)
                      +++=+|+|. |. +...|.+.+.  +|+.+|.+++.++.++.          .....+.+|..+...    .-...|.|+
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~--~vvvid~d~~~~~~~~~----------~~~~~~~gd~~~~~~l~~a~i~~a~~vi   69 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGH--EVLAVDINEEKVNAYAS----------YATHAVIANATEENELLSLGIRNFEYVI   69 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC--CCEEEESCHHHHHHTTT----------TCSEEEECCTTCTTHHHHHTGGGCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC--eEEEecCcHHHHHHHHH----------hCCcceeeecccchhhhccCCccccEEE
Confidence            345566654 43 3344455554  89999999998877653          234677788876541    123567665


Q ss_pred             eccccccCCC-hHHHHHHHHHhccCCcEEEEEE
Q 019957          243 AGAALHCWPS-PSNAVAEISRILRSGGVFVGTT  274 (333)
Q Consensus       243 ~~~vl~h~~d-~~~~l~~~~r~LkpgG~l~i~~  274 (333)
                      ....    .+ ....+-.+.+.+.+...++...
T Consensus        70 ~~~~----~~~~~~~~~~~~~~~~~~~~iiar~   98 (134)
T d2hmva1          70 VAIG----ANIQASTLTTLLLKELDIPNIWVKA   98 (134)
T ss_dssp             ECCC----SCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             EEcC----chHHhHHHHHHHHHHcCCCcEEeec
Confidence            5321    12 2233344444555666666554

>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Small proteins
fold: Zinc-binding domain of translation initiation factor 2 beta
superfamily: Zinc-binding domain of translation initiation factor 2 beta
family: Zinc-binding domain of translation initiation factor 2 beta
domain: Zinc-binding domain of translation initiation factor 2 beta
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=80.94  E-value=0.32  Score=26.83  Aligned_cols=33  Identities=27%  Similarity=0.334  Sum_probs=21.0

Q ss_pred             cccCCCccccccCCCCccccccccCceeeCCCCccccCc
Q 019957           62 SCPICYEPLIRKGPTGLTLGAIYRSGFKCRKCDKTYSSK  100 (333)
Q Consensus        62 ~CP~C~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  100 (333)
                      .|+.|+++-......      -..-.++|..||..-+++
T Consensus         3 ~C~~C~spDT~l~ke------~R~~~l~C~aCGa~r~V~   35 (37)
T d1neea2           3 ICHECNRPDTRIIRE------GRISLLKCEACGAKAPLK   35 (37)
T ss_dssp             HHTCCSSCSSCCEEE------TTTTEEECSTTSCCCCSC
T ss_pred             ECCCCCCCCCEEEEc------CCEEEEEeccCCCCcccc
Confidence            599999974332210      012478999999876554

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=80.32  E-value=7.5  Score=31.13  Aligned_cols=104  Identities=18%  Similarity=0.206  Sum_probs=69.2

Q ss_pred             CCCeEEEEcCCcC---HHHHHHHHhCCCCeEEEEeCC-HHHHHHHHHHHHhcCcCCCCCeEEEEccCCCCC---------
Q 019957          166 QGGLLVDVSCGSG---LFSRKFAKSGTYSGVVALDFS-ENMLRQCYDFIKQDNTILTSNLALVRADVCRLP---------  232 (333)
Q Consensus       166 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~g~D~s-~~~~~~a~~~~~~~~~~~~~~i~~~~~d~~~lp---------  232 (333)
                      .++++|=.|++.|   ..+..|++.|.  +|+..|.+ ++.++...+.++..    ..++.++.+|+.+..         
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~----g~~~~~~~~D~~~~~~v~~~~~~~   90 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKN----GSDAACVKANVGVVEDIVRMFEEA   90 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhh----CCceeeEeCCCCCHHHHHHHHHHH
Confidence            4678888888776   35667777765  89999887 55666666666654    357888999997632         


Q ss_pred             -CCCCCcceEEeccccccCCCh-------------------HHHHHHHHHhccCCcEEEEEEe
Q 019957          233 -FASGFVDAVHAGAALHCWPSP-------------------SNAVAEISRILRSGGVFVGTTF  275 (333)
Q Consensus       233 -~~~~~fD~V~~~~vl~h~~d~-------------------~~~l~~~~r~LkpgG~l~i~~~  275 (333)
                       -..+..|+++.+.........                   ....+.+...|+.+|..++...
T Consensus        91 ~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s  153 (272)
T d1g0oa_          91 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  153 (272)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             HHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccc
Confidence             112578988876655443211                   1346677788888887766543