Citrus Sinensis ID: 019972

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
MSSNPGIGSFCKANGYVLFVFVLFRLAASPCCASLSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNGTERSDPANASLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQTCSMTNG
ccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHcccccccccccEEEEccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHcccccccccHHHHHHHHHHccccccccHHHccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccccccccccc
ccccccHHHHHHHHHHHHHHHHHHHHcccccccccEccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHcccccccccHccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccEccEEcccccHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHHHccEEEHHHcHHHHHcccccccccccccccHHHHHHHHHHcccccccccEEEcccccccccccHHHHHHHccccccHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHHHHHHcccccEEHHHcEcccccccccc
mssnpgigsfckaNGYVLFVFVLFRLaaspccaslsfnfyaascpsaeFMVANTVrsassfdrtipgKLLRLLFHDCFvegcdasvllqgngtersdpanaslggfevIDSAKRVLEifcpgtvsCADIIALAARDsveiaggpaiqiptgrrdgrasaAENVRANIVDTTFTMNEMIKAFsskglsmddlVTLSgahtigsahCNAFndrfredpkgkltlidtSLDSSYANELMrkcpanasssvtvnndpetsfvfdNQYYRNLLAhkglfqsdsvllhDERTRKQVENFANDqesffsnwglSFLKVTSigvktedegeirqtcsmtng
MSSNPGIGSFCKANGYVLFVFVLFRLAASPCCASLSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNGTERSDPANASLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARdsveiaggpaiqiptgrrdgrasaaenvranivdttftMNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPanasssvtvnnDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQesffsnwglsFLKVTSigvktedegeirqtcsmtng
MSSNPGIGSFCKANGYVLFVFVLFRLAASPCCASLSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNGTERSDPANASLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQTCSMTNG
******IGSFCKANGYVLFVFVLFRLAASPCCASLSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQG***********SLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIP************NVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFR*****KLTLIDT*****************************TSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGVK****************
**************GYVLFVFVLFRLAASPCCASLSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNGTERSDPANASLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMR**P***S*SVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQTCSMTNG
MSSNPGIGSFCKANGYVLFVFVLFRLAASPCCASLSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNGTERSDPANASLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPT********AAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQTCSMTNG
*******GSFCKANGYVLFVFVLFRLAASPCCASLSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNGTERS*PANASLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQTCSM***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSNPGIGSFCKANGYVLFVFVLFRLAASPCCASLSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNGTERSDPANASLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQTCSMTNG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query333 2.2.26 [Sep-21-2011]
Q9SK52329 Peroxidase 18 OS=Arabidop yes no 0.900 0.911 0.687 1e-121
O81772326 Peroxidase 46 OS=Arabidop no no 0.978 1.0 0.638 1e-120
Q9LT91322 Peroxidase 66 OS=Arabidop no no 0.933 0.965 0.426 6e-69
P22196330 Cationic peroxidase 2 OS= N/A no 0.873 0.881 0.432 4e-63
Q43872317 Peroxidase 64 OS=Arabidop no no 0.927 0.974 0.421 6e-63
Q9SZB9325 Peroxidase 47 OS=Arabidop no no 0.912 0.935 0.412 3e-62
Q9FJZ9336 Peroxidase 72 OS=Arabidop no no 0.876 0.869 0.418 7e-62
O49293319 Peroxidase 13 OS=Arabidop no no 0.912 0.952 0.423 3e-61
Q43387328 Peroxidase 71 OS=Arabidop no no 0.876 0.890 0.429 3e-61
Q96509330 Peroxidase 55 OS=Arabidop no no 0.924 0.933 0.405 4e-61
>sp|Q9SK52|PER18_ARATH Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=2 SV=1 Back     alignment and function desciption
 Score =  434 bits (1115), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/301 (68%), Positives = 243/301 (80%), Gaps = 1/301 (0%)

Query: 33  ASLSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNG 92
           A LSFNFYA SCP AE +V NTVRSASS D ++ GKLLRL+FHDCFV+GCD SVL++GNG
Sbjct: 29  AELSFNFYAGSCPGAELIVRNTVRSASSSDPSVLGKLLRLIFHDCFVQGCDGSVLIRGNG 88

Query: 93  TERSDPANASLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGR 152
           TERSDP NASLGGF VI+S K +LEIFCPGTVSCADI+ LAARD+VE  GGP + IPTGR
Sbjct: 89  TERSDPGNASLGGFAVIESVKNILEIFCPGTVSCADILVLAARDAVEALGGPVVPIPTGR 148

Query: 153 RDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRF 212
           RDGR S A NVR NI+DT FT+++MI  FSSKGLS+ DLV LSGAHTIG+AHCN FN RF
Sbjct: 149 RDGRVSMAANVRPNIIDTDFTVDKMINIFSSKGLSVHDLVVLSGAHTIGAAHCNTFNSRF 208

Query: 213 REDPKGKLTLIDTSLDSSYANELMRKCPANASSSVT-VNNDPETSFVFDNQYYRNLLAHK 271
           + DPKG L LID SLD+SYA  L+ KC ++   + T V+NDPETS  FDNQYY+NLLAHK
Sbjct: 209 KLDPKGNLELIDASLDNSYAQTLVNKCSSSLDPTTTVVDNDPETSSTFDNQYYKNLLAHK 268

Query: 272 GLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQTCSMT 331
           GLFQ+DS L+ D+RTRK VE  ANDQESFF  W  SFLK++ +GV+  +EGEIR++CS  
Sbjct: 269 GLFQTDSALMEDDRTRKIVEILANDQESFFDRWTESFLKMSLMGVRVGEEGEIRRSCSAV 328

Query: 332 N 332
           N
Sbjct: 329 N 329
Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 7
>sp|O81772|PER46_ARATH Peroxidase 46 OS=Arabidopsis thaliana GN=PER46 PE=2 SV=1 Back     alignment and function description
>sp|Q9LT91|PER66_ARATH Peroxidase 66 OS=Arabidopsis thaliana GN=PER66 PE=2 SV=1 Back     alignment and function description
>sp|P22196|PER2_ARAHY Cationic peroxidase 2 OS=Arachis hypogaea GN=PNC2 PE=2 SV=1 Back     alignment and function description
>sp|Q43872|PER64_ARATH Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=1 SV=1 Back     alignment and function description
>sp|Q9SZB9|PER47_ARATH Peroxidase 47 OS=Arabidopsis thaliana GN=PER47 PE=2 SV=2 Back     alignment and function description
>sp|Q9FJZ9|PER72_ARATH Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=1 SV=1 Back     alignment and function description
>sp|O49293|PER13_ARATH Peroxidase 13 OS=Arabidopsis thaliana GN=PER13 PE=1 SV=2 Back     alignment and function description
>sp|Q43387|PER71_ARATH Peroxidase 71 OS=Arabidopsis thaliana GN=PER71 PE=1 SV=1 Back     alignment and function description
>sp|Q96509|PER55_ARATH Peroxidase 55 OS=Arabidopsis thaliana GN=PER55 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query333
224143363334 predicted protein [Populus trichocarpa] 0.924 0.922 0.782 1e-142
224092657332 predicted protein [Populus trichocarpa] 0.948 0.951 0.753 1e-140
211906534332 class III peroxidase [Gossypium hirsutum 0.945 0.948 0.781 1e-140
225430543329 PREDICTED: peroxidase 46 isoform 1 [Viti 0.948 0.960 0.767 1e-139
255548668 760 RNA lariat debranching enzyme, putative 0.903 0.396 0.796 1e-139
449455675327 PREDICTED: peroxidase 46-like [Cucumis s 0.936 0.954 0.709 1e-131
356563981330 PREDICTED: peroxidase 46-like [Glycine m 0.942 0.951 0.719 1e-129
356552426329 PREDICTED: peroxidase 46-like [Glycine m 0.939 0.951 0.726 1e-128
297825495329 hypothetical protein ARALYDRAFT_481340 [ 0.909 0.920 0.684 1e-119
15224621329 peroxidase 18 [Arabidopsis thaliana] gi| 0.900 0.911 0.687 1e-119
>gi|224143363|ref|XP_002324930.1| predicted protein [Populus trichocarpa] gi|222866364|gb|EEF03495.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/308 (78%), Positives = 275/308 (89%)

Query: 26  LAASPCCASLSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDAS 85
           + ASP  ASL FNFY ASCP+AE +V+NTVRSASS D TIPGKLLRL+FHDCFVEGCDAS
Sbjct: 27  VVASPASASLFFNFYGASCPTAELIVSNTVRSASSSDPTIPGKLLRLVFHDCFVEGCDAS 86

Query: 86  VLLQGNGTERSDPANASLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPA 145
           VLLQGNGTERSDP N SLGGF+VIDSAKR+LEIFCPGTVSCAD++ALAARD+V I GGP 
Sbjct: 87  VLLQGNGTERSDPGNRSLGGFQVIDSAKRMLEIFCPGTVSCADVVALAARDAVAITGGPQ 146

Query: 146 IQIPTGRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHC 205
           +QIPTGRRDGR SAA NVR NI+DTTFTMNEMI  F++KGLS++DLV LSGAHTIGSAHC
Sbjct: 147 LQIPTGRRDGRLSAAANVRPNIIDTTFTMNEMINIFTAKGLSLEDLVVLSGAHTIGSAHC 206

Query: 206 NAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYR 265
           +AF+DRF+ED KGKLTLIDTSLD +YANELM++CP +AS+S+TV NDPETS  FDNQYYR
Sbjct: 207 SAFSDRFQEDSKGKLTLIDTSLDRNYANELMQRCPVDASASITVVNDPETSSSFDNQYYR 266

Query: 266 NLLAHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIR 325
           NL+AHKGLFQSDSVLL D+RTR  V++FANDQE FF +W  SFLK+TSIGVKT +EGEIR
Sbjct: 267 NLVAHKGLFQSDSVLLDDKRTRNLVQDFANDQEKFFQSWSQSFLKLTSIGVKTGEEGEIR 326

Query: 326 QTCSMTNG 333
           Q+CSMT+G
Sbjct: 327 QSCSMTSG 334

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224092657|ref|XP_002309694.1| predicted protein [Populus trichocarpa] gi|222855670|gb|EEE93217.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|211906534|gb|ACJ11760.1| class III peroxidase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|225430543|ref|XP_002285587.1| PREDICTED: peroxidase 46 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255548668|ref|XP_002515390.1| RNA lariat debranching enzyme, putative [Ricinus communis] gi|223545334|gb|EEF46839.1| RNA lariat debranching enzyme, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449455675|ref|XP_004145577.1| PREDICTED: peroxidase 46-like [Cucumis sativus] gi|449485318|ref|XP_004157132.1| PREDICTED: peroxidase 46-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356563981|ref|XP_003550235.1| PREDICTED: peroxidase 46-like [Glycine max] Back     alignment and taxonomy information
>gi|356552426|ref|XP_003544569.1| PREDICTED: peroxidase 46-like [Glycine max] Back     alignment and taxonomy information
>gi|297825495|ref|XP_002880630.1| hypothetical protein ARALYDRAFT_481340 [Arabidopsis lyrata subsp. lyrata] gi|297326469|gb|EFH56889.1| hypothetical protein ARALYDRAFT_481340 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15224621|ref|NP_180053.1| peroxidase 18 [Arabidopsis thaliana] gi|25453218|sp|Q9SK52.1|PER18_ARATH RecName: Full=Peroxidase 18; Short=Atperox P18; Flags: Precursor gi|4559371|gb|AAD23032.1| putative peroxidase [Arabidopsis thaliana] gi|330252536|gb|AEC07630.1| peroxidase 18 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query333
TAIR|locus:2047380329 AT2G24800 [Arabidopsis thalian 0.963 0.975 0.659 2.9e-112
TAIR|locus:2166508322 AT5G51890 [Arabidopsis thalian 0.933 0.965 0.426 2.5e-65
TAIR|locus:2119251325 AT4G33420 [Arabidopsis thalian 0.924 0.947 0.412 2.7e-59
TAIR|locus:2174693330 AT5G14130 [Arabidopsis thalian 0.921 0.930 0.406 5.7e-59
TAIR|locus:2164865319 AT5G39580 [Arabidopsis thalian 0.867 0.905 0.452 9.3e-59
TAIR|locus:2165820317 PER64 "peroxidase 64" [Arabido 0.927 0.974 0.421 1.2e-58
TAIR|locus:2207210326 RCI3 "RARE COLD INDUCIBLE GENE 0.897 0.917 0.443 3.2e-58
TAIR|locus:2154925336 AT5G66390 [Arabidopsis thalian 0.873 0.866 0.423 3.2e-58
TAIR|locus:2164366328 AT5G64120 [Arabidopsis thalian 0.867 0.881 0.437 8.4e-58
TAIR|locus:2044485323 AT2G18980 [Arabidopsis thalian 0.918 0.947 0.414 2.2e-57
TAIR|locus:2047380 AT2G24800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
 Identities = 213/323 (65%), Positives = 250/323 (77%)

Query:    11 CKANGYVLFVFVLFRLAASPCCASLSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLL 70
             CK   Y     +L  L  S   A LSFNFYA SCP AE +V NTVRSASS D ++ GKLL
Sbjct:     8 CKPK-YTFLSSLLLLLLLSSSVAELSFNFYAGSCPGAELIVRNTVRSASSSDPSVLGKLL 66

Query:    71 RLLFHDCFVEGCDASVLLQGNGTERSDPANASLGGFEVIDSAKRVLEIFCPGTVSCADII 130
             RL+FHDCFV+GCD SVL++GNGTERSDP NASLGGF VI+S K +LEIFCPGTVSCADI+
Sbjct:    67 RLIFHDCFVQGCDGSVLIRGNGTERSDPGNASLGGFAVIESVKNILEIFCPGTVSCADIL 126

Query:   131 ALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD 190
              LAARD+VE  GGP + IPTGRRDGR S A NVR NI+DT FT+++MI  FSSKGLS+ D
Sbjct:   127 VLAARDAVEALGGPVVPIPTGRRDGRVSMAANVRPNIIDTDFTVDKMINIFSSKGLSVHD 186

Query:   191 LVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTV- 249
             LV LSGAHTIG+AHCN FN RF+ DPKG L LID SLD+SYA  L+ KC ++   + TV 
Sbjct:   187 LVVLSGAHTIGAAHCNTFNSRFKLDPKGNLELIDASLDNSYAQTLVNKCSSSLDPTTTVV 246

Query:   250 NNDPETSFVFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFL 309
             +NDPETS  FDNQYY+NLLAHKGLFQ+DS L+ D+RTRK VE  ANDQESFF  W  SFL
Sbjct:   247 DNDPETSSTFDNQYYKNLLAHKGLFQTDSALMEDDRTRKIVEILANDQESFFDRWTESFL 306

Query:   310 KVTSIGVKTEDEGEIRQTCSMTN 332
             K++ +GV+  +EGEIR++CS  N
Sbjct:   307 KMSLMGVRVGEEGEIRRSCSAVN 329
GO:0004601 "peroxidase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0006979 "response to oxidative stress" evidence=IEA
GO:0020037 "heme binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2166508 AT5G51890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119251 AT4G33420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174693 AT5G14130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164865 AT5G39580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165820 PER64 "peroxidase 64" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207210 RCI3 "RARE COLD INDUCIBLE GENE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154925 AT5G66390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164366 AT5G64120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044485 AT2G18980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SK52PER18_ARATH1, ., 1, 1, ., 1, ., 70.68770.90090.9118yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.11.1.70.991
3rd Layer1.11.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query333
cd00693298 cd00693, secretory_peroxidase, Horseradish peroxid 1e-148
PLN03030324 PLN03030, PLN03030, cationic peroxidase; Provision 5e-76
pfam00141180 pfam00141, peroxidase, Peroxidase 2e-59
cd00314255 cd00314, plant_peroxidase_like, Heme-dependent per 2e-23
cd00691253 cd00691, ascorbate_peroxidase, Ascorbate peroxidas 2e-22
PLN02608289 PLN02608, PLN02608, L-ascorbate peroxidase 4e-15
PLN02364250 PLN02364, PLN02364, L-ascorbate peroxidase 1 2e-14
PLN02879251 PLN02879, PLN02879, L-ascorbate peroxidase 2e-14
cd08201264 cd08201, plant_peroxidase_like_1, Uncharacterized 1e-08
cd00692328 cd00692, ligninase, Ligninase and other manganese- 2e-08
pfam00141180 pfam00141, peroxidase, Peroxidase 6e-06
COG0376 730 COG0376, KatG, Catalase (peroxidase I) [Inorganic 2e-04
>gnl|CDD|173827 cd00693, secretory_peroxidase, Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information 
 Score =  418 bits (1077), Expect = e-148
 Identities = 149/298 (50%), Positives = 196/298 (65%), Gaps = 6/298 (2%)

Query: 35  LSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQG---N 91
           LS  FY+ SCP+AE +V + VR+A   D  +   LLRL FHDCFV GCDASVLL     N
Sbjct: 2   LSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANN 61

Query: 92  GTERSDPANASLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTG 151
            +E+  P N SL GF+VID  K  LE  CPG VSCADI+ALAARD+V +AGGP+ ++P G
Sbjct: 62  TSEKDAPPNLSLRGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLG 121

Query: 152 RRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAFNDR 211
           RRDGR S+A +V  N+    F+++++I  F+SKGL++ DLV LSGAHTIG AHC++F+DR
Sbjct: 122 RRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTVTDLVALSGAHTIGRAHCSSFSDR 180

Query: 212 FREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLAHK 271
                       D +LD +YA +L +KCPA       V  DP T   FDN YY+NLLA +
Sbjct: 181 L--YNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGR 238

Query: 272 GLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQTCS 329
           GL  SD  LL D RTR  V  +A +Q++FF ++  + +K+ +IGV T  +GEIR+ C 
Sbjct: 239 GLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCR 296

Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. Length = 298
>gnl|CDD|215545 PLN03030, PLN03030, cationic peroxidase; Provisional Back     alignment and domain information
>gnl|CDD|215745 pfam00141, peroxidase, Peroxidase Back     alignment and domain information
>gnl|CDD|173823 cd00314, plant_peroxidase_like, Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>gnl|CDD|173825 cd00691, ascorbate_peroxidase, Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>gnl|CDD|178218 PLN02608, PLN02608, L-ascorbate peroxidase Back     alignment and domain information
>gnl|CDD|166005 PLN02364, PLN02364, L-ascorbate peroxidase 1 Back     alignment and domain information
>gnl|CDD|178467 PLN02879, PLN02879, L-ascorbate peroxidase Back     alignment and domain information
>gnl|CDD|173829 cd08201, plant_peroxidase_like_1, Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information
>gnl|CDD|173826 cd00692, ligninase, Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>gnl|CDD|215745 pfam00141, peroxidase, Peroxidase Back     alignment and domain information
>gnl|CDD|223453 COG0376, KatG, Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 333
PLN03030324 cationic peroxidase; Provisional 100.0
cd00693298 secretory_peroxidase Horseradish peroxidase and re 100.0
PF00141230 peroxidase: Peroxidase; InterPro: IPR002016 Peroxi 100.0
PLN02608289 L-ascorbate peroxidase 100.0
cd00691253 ascorbate_peroxidase Ascorbate peroxidases and cyt 100.0
PLN02364250 L-ascorbate peroxidase 1 100.0
cd00692328 ligninase Ligninase and other manganese-dependent 100.0
PLN02879251 L-ascorbate peroxidase 100.0
cd00314255 plant_peroxidase_like Heme-dependent peroxidases s 100.0
cd00649409 catalase_peroxidase_1 N-terminal catalytic domain 100.0
TIGR00198 716 cat_per_HPI catalase/peroxidase HPI. Note that the 100.0
cd08201264 plant_peroxidase_like_1 Uncharacterized family of 100.0
PRK15061 726 catalase/hydroperoxidase HPI(I); Provisional 100.0
cd08200297 catalase_peroxidase_2 C-terminal non-catalytic dom 100.0
TIGR00198716 cat_per_HPI catalase/peroxidase HPI. Note that the 100.0
PRK15061726 catalase/hydroperoxidase HPI(I); Provisional 100.0
COG0376 730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.96
COG0376730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.45
>PLN03030 cationic peroxidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.3e-108  Score=788.59  Aligned_cols=310  Identities=42%  Similarity=0.668  Sum_probs=289.0

Q ss_pred             HHHHHHhhc-ccCCCCCCcccccccChhHHHHHHHHHHhhhhcCCCchhhHHHHhhhcccccCCCceeecCCCCCCCCCc
Q 019972           20 VFVLFRLAA-SPCCASLSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNGTERSDP   98 (333)
Q Consensus        20 ~~~~~~~~~-~~~~~~l~~~fY~~sCP~~e~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv~GcDgSill~~~~~E~~~~   98 (333)
                      .+++++.++ ...+++|+++||++|||++|+||+++|++++.+||+++|++|||+||||||+||||||||+++..||+++
T Consensus         9 ~~~~~~~~~~~~~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~~~Ek~a~   88 (324)
T PLN03030          9 FFLLAMMATTLVQGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGSNTEKTAL   88 (324)
T ss_pred             HHHHHHHhcccchhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCCcccccCC
Confidence            333333333 3345679999999999999999999999999999999999999999999999999999999766899999


Q ss_pred             CCCCCchhHHHHHHHHHHHhhCCCCCCHHHHHHHhhHHHHHHcCCCcccCCCCCCCCCCccccccccCCCCCCCCHHHHH
Q 019972           99 ANASLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMNEMI  178 (333)
Q Consensus        99 ~N~~l~g~~~I~~iK~~le~~cp~~VScADilalAar~aV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~  178 (333)
                      +|.+|+||++|+.||++||++||++||||||||+||||||+++|||.|+|++||||+++|...++. +||+|+.++++|+
T Consensus        89 ~N~~l~Gf~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~  167 (324)
T PLN03030         89 PNLLLRGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQK  167 (324)
T ss_pred             CCcCcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999998877664 8999999999999


Q ss_pred             HHHHhCCCCCCCceeeeccccccccccccccccccCCCCCCCc-CCCCcCCHHHHHHHhhhCCCCCCCCccccCCCCCcc
Q 019972          179 KAFSSKGLSMDDLVTLSGAHTIGSAHCNAFNDRFREDPKGKLT-LIDTSLDSSYANELMRKCPANASSSVTVNNDPETSF  257 (333)
Q Consensus       179 ~~F~~~Gl~~~dlVaLsGaHTiG~~hc~~f~~Rl~~~nf~g~~-~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~Tp~  257 (333)
                      +.|+++||+.+|||+||||||||++||.+|.+||  |||.+++ .+||+||+.|+.+||+.||..++.+..+++|+.||.
T Consensus       168 ~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rl--ynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~  245 (324)
T PLN03030        168 QKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRL--YNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSN  245 (324)
T ss_pred             HHHHHcCCCHHHheeeeeccccceeeeecccccc--ccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCc
Confidence            9999999999999999999999999999999999  9998875 479999999999999999963333346889999999


Q ss_pred             ccchHHHHHhhhCcccccchhhhccChhhHHHHHHhhhCH----HHHHHHHHHHHHHHhcCCCCCCCCCcccccccCCC
Q 019972          258 VFDNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQ----ESFFSNWGLSFLKVTSIGVKTEDEGEIRQTCSMTN  332 (333)
Q Consensus       258 ~FDN~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~yA~~~----~~F~~~Fa~Am~Km~~lgv~tg~~GeIR~~C~~~N  332 (333)
                      +|||+||+||+.++|+|+|||+|++|++|+.+|++||.|+    +.|+++|++||+|||+|+|+||.+||||++|+++|
T Consensus       246 ~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN  324 (324)
T PLN03030        246 RFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN  324 (324)
T ss_pred             ccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence            9999999999999999999999999999999999999875    59999999999999999999999999999999998

>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions Back     alignment and domain information
>PLN02608 L-ascorbate peroxidase Back     alignment and domain information
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>PLN02364 L-ascorbate peroxidase 1 Back     alignment and domain information
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>PLN02879 L-ascorbate peroxidase Back     alignment and domain information
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query333
1bgp_A309 Crystal Structure Of Barley Grain Peroxidase 1 Leng 6e-59
3hdl_A304 Crystal Structure Of Highly Glycosylated Peroxidase 1e-58
1sch_A294 Peanut Peroxidase Length = 294 4e-56
1pa2_A306 Arabidopsis Thaliana Peroxidase A2 Length = 306 2e-53
4a5g_A308 Raphanus Sativus Anionic Peroxidase. Length = 308 1e-50
1qgj_A300 Arabidopsis Thaliana Peroxidase N Length = 300 2e-50
1gx2_A309 Recombinant Horseradish Peroxidase Phe209ser Comple 3e-49
1gwo_A309 Recombinant Horseradish Peroxidase C1a Ala170gln Le 4e-49
1gwu_A309 Recombinant Horseradish Peroxidase C1a Ala140gly Le 5e-49
3atj_A309 Heme Ligand Mutant Of Recombinant Horseradish Perox 5e-49
1w4w_A323 Ferric Horseradish Peroxidase C1a In Complex With F 7e-49
2atj_A308 Recombinant Horseradish Peroxidase Complex With Ben 7e-49
6atj_A308 Recombinant Horseradish Peroxidase C Complex With F 7e-49
1atj_A306 Recombinant Horseradish Peroxidase C1a Length = 306 7e-49
1fhf_A304 The Structure Of Soybean Peroxidase Length = 304 1e-48
1gw2_A308 Recombinant Horseradish Peroxidase C1a Thr171ser In 2e-48
2ylj_A306 Horse Radish Peroxidase, Mutant S167y Length = 306 3e-48
4atj_A309 Distal Heme Pocket Mutant (H42e) Of Recombinant Hor 7e-48
1kzm_A308 Distal Heme Pocket Mutant (r38s/h42e) Of Recombinan 5e-47
1apx_A249 Crystal Structure Of Recombinant Ascorbate Peroxida 1e-13
2cl4_X261 Ascorbate Peroxidase R172a Mutant Length = 261 9e-13
3zcy_A249 Ascorbate Peroxidase W41a-h42y Mutant Length = 249 2e-12
3zcg_A261 Ascorbate Peroxidase W41a-h42c Mutant Length = 261 2e-12
3zch_A261 Ascorbate Peroxidase W41a-h42m Mutant Length = 261 2e-12
2y6b_A249 Ascorbate Peroxidase R38k Mutant Length = 249 2e-12
2ggn_X261 Conformational Mobility In The Active Site Of A Hem 2e-12
2y6a_A249 Ascorbate Peroxidase R38a Mutant Length = 249 2e-12
2xif_A249 The Structure Of Ascorbate Peroxidase Compound Ii L 2e-12
2vcs_A261 Structure Of Isoniazid (Inh) Bound To Cytosolic Soy 2e-12
2vcf_X264 Structure Of Isoniazid (Inh) Bound To Cytosolic Soy 2e-12
1oaf_A261 Ascobate Peroxidase From Soybean Cytosol In Complex 3e-12
4ged_A268 Crystal Structure Of The Leishmania Major Peroxidas 6e-11
3riv_A271 The Crystal Structure Of Leishmania Major Peroxidas 6e-11
3riw_A271 The Crystal Structure Of Leishmania Major Peroxidas 6e-11
1iyn_A295 Crystal Structure Of Chloroplastic Ascorbate Peroxi 6e-09
1stq_A294 Cyrstal Structure Of Cytochrome C Peroxidase Mutant 9e-08
1sog_A294 Cyrstal Structure Of Cytochrome C Peroxidase Mutant 3e-07
1jdr_A294 Crystal Structure Of A Proximal Domain Potassium Bi 5e-07
1krj_A294 Engineering Calcium-Binding Site Into Cytochrome C 6e-07
1jci_A294 Stabilization Of The Engineered Cation-Binding Loop 8e-07
1bem_A291 Interaction Between Proximal And Distals Regions Of 4e-06
2xil_A294 The Structure Of Cytochrome C Peroxidase Compound I 5e-06
2xj5_A294 The Structure Of Cytochrome C Peroxidase Compound I 5e-06
1ebe_A294 Laue Diffraction Study On The Structure Of Cytochro 5e-06
1mk8_A294 Crystal Structure Of A Mutant Cytochrome C Peroxida 5e-06
1kok_A294 Crystal Structure Of Mesopone Cytochrome C Peroxida 5e-06
3r98_A293 Joint Neutron And X-Ray Structure Of Cytochrome C P 5e-06
4a78_A296 Cytochrome C Peroxidase M119w In Complex With Guiac 5e-06
1ccl_A291 Probing The Strength And Character Of An Asp-His-X 6e-06
1cpg_A296 A Cation Binding Motif Stabilizes The Compound I Ra 6e-06
3m23_A291 Crystallographic And Single Crystal Spectral Analys 6e-06
1cci_A294 How Flexible Are Proteins? Trapping Of A Flexible L 6e-06
2v23_A296 Structure Of Cytochrome C Peroxidase Mutant N184r Y 7e-06
2v2e_A294 Structure Of Isoniazid (Inh) Bound To Cytochrome C 7e-06
2cep_A296 Role Of Met-230 In Intramolecular Electron Transfer 7e-06
4ccx_A294 Altering Substrate Specificity At The Heme Edge Of 7e-06
4a7m_A296 Cytochrome C Peroxidase S81w Mutant Length = 296 8e-06
1cck_A291 Altering Substrate Specificity Of Cytochrome C Pero 8e-06
4a71_A296 Cytochrome C Peroxidase In Complex With Phenol Leng 8e-06
1a2f_A291 Probing The Strength And Character Of An Asp-His-X 8e-06
1beq_A291 Interaction Between Proximal And Distals Regions Of 9e-06
1bep_A291 Effect Of Unnatural Heme Substitution On Kinetics O 1e-05
2anz_A294 Cytochrome C Peroxidase In Complex With 2,6-Diamino 1e-05
4ccp_A296 X-Ray Structures Of Recombinant Yeast Cytochrome C 1e-05
2pcb_A296 Crystal Structure Of A Complex Between Electron Tra 1e-05
6ccp_A296 Effect Of Arginine-48 Replacement On The Reaction B 1e-05
3ccx_A294 Altering Substrate Specificity At The Heme Edge Of 1e-05
7ccp_A296 Effect Of Arginine-48 Replacement On The Reaction B 1e-05
3e2n_A287 Engineering Ascorbate Peroxidase Activity Into Cyto 1e-05
5ccp_A296 Histidine 52 Is A Critical Residue For Rapid Format 1e-05
1dj1_A291 Crystal Structure Of R48a Mutant Of Cytochrome C Pe 1e-05
1bek_A291 Effect Of Unnatural Heme Substitution On Kinetics O 1e-05
1bej_A291 Interaction Between Proximal And Distals Regions Of 1e-05
1cca_A297 The Asp-His-Fe Triad Of Cytochrome C Peroxidase Con 1e-05
2rbu_X292 Cytochrome C Peroxidase In Complex With Cyclopentan 1e-05
2gb8_A294 Solution Structure Of The Complex Between Yeast Iso 1e-05
2aqd_A294 Cytochrome C Peroxidase (Ccp) In Complex With 2,5- 1e-05
1cpd_A296 A Cation Binding Motif Stabilizes The Compound I Ra 1e-05
1bva_A294 Manganese Binding Mutant In Cytochrome C Peroxidase 1e-05
1s6v_A294 Structure Of A Cytochrome C Peroxidase-Cytochrome C 1e-05
2x07_A293 Cytochrome C Peroxidase: Engineered Ascorbate Bindi 1e-05
1cyf_A296 Identifying The Physiological Electron Transfer Sit 2e-05
1dcc_A296 2.2 Angstrom Structure Of Oxyperoxidase: A Model Fo 2e-05
1a2g_A291 Probing The Strength And Character Of An Asp-His-X 3e-05
1ccb_A297 The Asp-His-Fe Triad Of Cytochrome C Peroxidase Con 4e-05
2ccp_A296 X-Ray Structures Of Recombinant Yeast Cytochrome C 4e-05
1cmu_A294 The Role Of Aspartate-235 In The Binding Of Cations 5e-05
3e2o_A294 Crystal Structure Of Cytochrome C Peroxidase, N184r 5e-05
2ia8_A291 Kinetic And Crystallographic Studies Of A Redesigne 1e-04
1ccc_A297 The Asp-His-Fe Triad Of Cytochrome C Peroxidase Con 1e-04
3exb_A295 Crystal Structure Of Cytochrome C Peroxidase With A 1e-04
1kxn_A289 Crystal Structure Of Cytochrome C Peroxidase With A 1e-04
1kxm_A290 Crystal Structure Of Cytochrome C Peroxidase With A 1e-04
1ds4_A292 Cytochrome C Peroxidase H175g Mutant, Imidazole Com 2e-04
1cce_A291 Construction Of A Bis-Aquo Heme Enzyme And Replacem 2e-04
1dse_A292 Cytochrome C Peroxidase H175g Mutant, Imidazole Com 3e-04
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1 Length = 309 Back     alignment and structure 
Iteration: 1

 Score =  224 bits (571), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 131/313 (41%), Positives = 185/313 (59%), Gaps = 15/313 (4%)
Query: 27  AASPCCASLSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASV 86
           A  P    LSF+FY  +CP AE +V   V+ A   D  +   LLRL FHDCFV+GCDASV
Sbjct: 1   AEPPVAPGLSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASV 60
Query: 87  LLQGNGT---ERSDPANASL--GGFEVIDSAKRVLEIFCPG-TVSCADIIALAARDSVEI 140
           LL G+ T   E+  P N +L    F+ ++  +  LE  C G  VSC+DI+ALAARDSV +
Sbjct: 61  LLDGSATGPGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVV 120
Query: 141 AGGPAIQIPTGRRDGRASAA-ENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHT 199
           +GGP  ++P GRRD R+ A+ ++V +++   +  +  ++      GL   DLVT+SG HT
Sbjct: 121 SGGPDYRVPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHT 180
Query: 200 IGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVF 259
           IG AHC++F DR    P       D ++  ++ + L R CPA  +   TV  D  T  VF
Sbjct: 181 IGLAHCSSFEDRLFPRP-------DPTISPTFLSRLKRTCPAKGTDRRTVL-DVRTPNVF 232
Query: 260 DNQYYRNLLAHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTE 319
           DN+YY +L+  +GLF SD  L  +  TR  VE FA  Q+ FF  +G+S  K+  + V+T 
Sbjct: 233 DNKYYIDLVNREGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTS 292
Query: 320 DEGEIRQTCSMTN 332
           D+GE+R+ CS+ N
Sbjct: 293 DQGEVRRNCSVRN 305
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree Length = 304 Back     alignment and structure
>pdb|1SCH|A Chain A, Peanut Peroxidase Length = 294 Back     alignment and structure
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2 Length = 306 Back     alignment and structure
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase. Length = 308 Back     alignment and structure
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N Length = 300 Back     alignment and structure
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln Length = 309 Back     alignment and structure
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly Length = 309 Back     alignment and structure
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate Length = 323 Back     alignment and structure
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With Benzhydroxamic Acid Length = 308 Back     alignment and structure
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Length = 306 Back     alignment and structure
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase Length = 304 Back     alignment and structure
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y Length = 306 Back     alignment and structure
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant Horseradish Peroxidase C (hrp C) Length = 308 Back     alignment and structure
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase Length = 249 Back     alignment and structure
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant Length = 261 Back     alignment and structure
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant Length = 249 Back     alignment and structure
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant Length = 261 Back     alignment and structure
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant Length = 261 Back     alignment and structure
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant Length = 249 Back     alignment and structure
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme Peroxidase Length = 261 Back     alignment and structure
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant Length = 249 Back     alignment and structure
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii Length = 249 Back     alignment and structure
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean Ascorbate Peroxidase Mutant H42a Length = 261 Back     alignment and structure
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean Ascorbate Peroxidase Length = 264 Back     alignment and structure
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With Ascorbate Length = 261 Back     alignment and structure
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major Peroxidase-Cytochrome C Complex Length = 268 Back     alignment and structure
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase Length = 271 Back     alignment and structure
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase Mutant C197t Length = 271 Back     alignment and structure
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase From Tobacco Plants And Structural Insights For Its Instability Length = 295 Back     alignment and structure
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant: Ccpk2m3 Length = 294 Back     alignment and structure
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant: Ccpk2m2 Length = 294 Back     alignment and structure
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding Variant Of Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C Peroxidase (Ccp) Length = 294 Back     alignment and structure
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In Cytochrome C Peroxidase (Ccp) Length = 294 Back     alignment and structure
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I Length = 294 Back     alignment and structure
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii Length = 294 Back     alignment and structure
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C Peroxidase Compound I Length = 294 Back     alignment and structure
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase Showing A Novel Trp-Tyr Covalent Cross-Link Length = 294 Back     alignment and structure
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (Mpccp) Length = 294 Back     alignment and structure
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C Peroxidase Length = 293 Back     alignment and structure
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol Length = 296 Back     alignment and structure
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X Hydrogen Bond By Introducing Buried Charges Length = 291 Back     alignment and structure
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical Of Cytochrome C Peroxidase Length = 296 Back     alignment and structure
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of The Peroxidase Ferryl Intermediate Length = 291 Back     alignment and structure
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop Length = 294 Back     alignment and structure
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a Length = 296 Back     alignment and structure
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C Peroxidase Mutant N184r Y36a Length = 294 Back     alignment and structure
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer Between The Oxyferryl Heme And Trp 191 In Cytochrome C Peroxidase Compound Ii Length = 296 Back     alignment and structure
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant Length = 296 Back     alignment and structure
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase Towards A Small Molecular Substrate Peroxidase By Substituting Tyrosine For Phe 202 Length = 291 Back     alignment and structure
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol Length = 296 Back     alignment and structure
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X Hydrogen Bond By Introducing Buried Charges Length = 291 Back     alignment and structure
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of Electron Transfer In Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With 2,6-Diaminopyridine Length = 294 Back     alignment and structure
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C Peroxidase And Three Heme-Cleft Mutants Prepared By Site-Directed Mutagenesis Length = 296 Back     alignment and structure
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer Partners, Cytochrome C Peroxidase And Cytochrome C Length = 296 Back     alignment and structure
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between Cytochrome C Peroxidase And Hydrogen Peroxide Length = 296 Back     alignment and structure
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between Cytochrome C Peroxidase And Hydrogen Peroxide Length = 296 Back     alignment and structure
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome C Peroxidase Length = 287 Back     alignment and structure
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of Cytochrome C Peroxidase Compound I Length = 296 Back     alignment and structure
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of Electron Transfer In Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls The Reduction Potential, Electronic Structure, And Coupling Of The Tryptophan Free-Radical To The Heme Length = 297 Back     alignment and structure
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With Cyclopentane-Carboximidamide Length = 292 Back     alignment and structure
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1- Cytochrome C And Yeast Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5- Diaminopyridine Length = 294 Back     alignment and structure
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical Of Cytochrome C Peroxidase Length = 296 Back     alignment and structure
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site Specific Cross-Link Length = 294 Back     alignment and structure
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site Length = 293 Back     alignment and structure
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of Cytochrome C Peroxidase By Structure-Based Engineering Length = 296 Back     alignment and structure
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The Enzyme:peroxide Complex Length = 296 Back     alignment and structure
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X Hydrogen Bond By Introducing Buried Charges Length = 291 Back     alignment and structure
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls The Reduction Potential, Electronic Structure, And Coupling Of The Tryptophan Free-Radical To The Heme Length = 297 Back     alignment and structure
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C Peroxidase And Three Heme-Cleft Mutants Prepared By Site-Directed Mutagenesis Length = 296 Back     alignment and structure
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An Artificial Cavity At The Radical Site Of Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant Length = 294 Back     alignment and structure
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned Manganese-Binding Site In Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls The Reduction Potential, Electronic Structure, And Coupling Of The Tryptophan Free-Radical To The Heme Length = 297 Back     alignment and structure
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A Proposed Electron Pathway Excised In A Complex With A Peptide Wire Length = 295 Back     alignment and structure
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A Proposed Electron Transfer Pathway Excised To Form A Ligand Binding Channel Length = 289 Back     alignment and structure
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A Proposed Electron Transfer Pathway Excised To Form A Ligand Binding Channel Length = 290 Back     alignment and structure
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex, Ph 6, 100k Length = 292 Back     alignment and structure
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement With Exogenous Ligand Length = 291 Back     alignment and structure
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex, With Phosphate Bound, Ph 6, 100k Length = 292 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query333
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 1e-139
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 1e-139
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 1e-139
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 1e-139
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 1e-136
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 1e-136
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 1e-135
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 2e-76
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 5e-65
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 1e-60
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 6e-60
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 3e-55
2e39_A344 Peroxidase; heme protein, coordination geometry of 3e-55
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 1e-51
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 4e-28
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 4e-21
3rrw_A268 Thylakoid lumenal 29 kDa protein, chloroplastic; c 3e-05
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} Length = 304 Back     alignment and structure
 Score =  396 bits (1020), Expect = e-139
 Identities = 128/305 (41%), Positives = 174/305 (57%), Gaps = 10/305 (3%)

Query: 35  LSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLL---QGN 91
           L   FY  SCP+AE +V   V +A + +  I   L+R+ FHDCFV GCDASVLL     N
Sbjct: 2   LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61

Query: 92  GTERSDPANA-SLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPT 150
             E+    N  SL GFEVI +AK  +E  CP TVSCADI+A AARDS  +AG    Q+P+
Sbjct: 62  TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121

Query: 151 GRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAFND 210
           GRRDG  S A    A I    F   ++I +F++K L+ D++VTLSGAH+IG AHC++F +
Sbjct: 122 GRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTN 181

Query: 211 R-FREDPKGKLTLIDTSLDSSYANELMRKCPANASS--SVTVNNDPETSFVFDNQYYRNL 267
           R +  +       ID +L  SYA  L   CPAN++    +TV+ D  T  V DN YY  +
Sbjct: 182 RLYNFNSGSG---IDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGV 238

Query: 268 LAHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQT 327
               GL  SD  L+ +      V+  A +  ++ S +  + +K+  I V T  +GEIR  
Sbjct: 239 QLTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTN 298

Query: 328 CSMTN 332
           CS+ N
Sbjct: 299 CSVVN 303
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Length = 294 Back     alignment and structure
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Length = 304 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Length = 309 Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Length = 306 Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Length = 300 Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Length = 309 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Length = 295 Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Length = 261 Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Length = 357 Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* Length = 331 Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} Length = 338 Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Length = 344 Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Length = 343 Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* Length = 271 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} PDB: 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* 1mk8_A* 1mkq_A* ... Length = 294 Back     alignment and structure
>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana} Length = 268 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query333
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 100.0
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 100.0
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 100.0
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 100.0
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 100.0
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 100.0
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 100.0
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 100.0
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 100.0
2e39_A344 Peroxidase; heme protein, coordination geometry of 100.0
2cca_A 740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
1ub2_A 720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 100.0
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 100.0
1itk_A 731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 100.0
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 100.0
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 100.0
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 100.0
3ut2_A 764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
3vli_A 737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
3n3r_A 748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
1u2k_A309 Peroxidase/catalase HPI; KATG, catalase-peroxidase 100.0
2cca_A740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
3rrw_A268 Thylakoid lumenal 29 kDa protein, chloroplastic; c 100.0
1itk_A731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
1ub2_A720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3vli_A737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
3n3r_A748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
3ut2_A764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} SCOP: a.93.1.0 Back     alignment and structure
Probab=100.00  E-value=9.3e-110  Score=793.51  Aligned_cols=297  Identities=43%  Similarity=0.695  Sum_probs=288.0

Q ss_pred             CCcccccccChhHHHHHHHHHHhhhhcCCCchhhHHHHhhhcccccCCCceeecCCCC---CCCCCcCCC-CCchhHHHH
Q 019972           35 LSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNG---TERSDPANA-SLGGFEVID  110 (333)
Q Consensus        35 l~~~fY~~sCP~~e~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv~GcDgSill~~~~---~E~~~~~N~-~l~g~~~I~  110 (333)
                      |+++||++|||++|+|||++|++++.+|++++|++||||||||||+||||||||++++   +||++++|. +||||++||
T Consensus         2 L~~~fY~~sCP~~e~iVr~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDgSiLld~t~~~~~Ek~~~~N~~~lrgf~vid   81 (304)
T 3hdl_A            2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANNTAEKDAIPNNPSLRGFEVIT   81 (304)
T ss_dssp             CEETTTTTTCTTHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHTTTSSSSGGGCCCBTTBCCGGGSTTTTTTCCCHHHHH
T ss_pred             CccChhhCcCcCHHHHHHHHHHHHHHhCCcchHHHHHHheecccCCCCCeeeeecCCCCCcccccCCCcccchHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999999999864   799999998 899999999


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHhhHHHHHHcCCCcccCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHhCCCCCCC
Q 019972          111 SAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDD  190 (333)
Q Consensus       111 ~iK~~le~~cp~~VScADilalAar~aV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d  190 (333)
                      .||++||++||++||||||||||||+||+++|||.|+|++||||++++...+++.+||+|+.++++|++.|++|||+++|
T Consensus        82 ~iK~~le~~Cp~~VScADilalAardav~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d  161 (304)
T 3hdl_A           82 AAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADE  161 (304)
T ss_dssp             HHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHCCCCCCEECCCBCSCCCHHHHHHHSCCTTCCHHHHHHHHHTTTCCHHH
T ss_pred             HHHHHHHhhCCCCccHHHHHHHHHhhhhhccCCCccccccCccCCCCCCccccccCCCCCCCCHHHHHHHHHHcCCCHHH
Confidence            99999999999999999999999999999999999999999999999988888889999999999999999999999999


Q ss_pred             ceeeeccccccccccccccccccCCCCCCCcCCCCcCCHHHHHHHhhhCCCCCC--CCccccCCCCCccccchHHHHHhh
Q 019972          191 LVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANAS--SSVTVNNDPETSFVFDNQYYRNLL  268 (333)
Q Consensus       191 lVaLsGaHTiG~~hc~~f~~Rl~~~nf~g~~~~Dp~~d~~~~~~L~~~Cp~~~~--~~~~~~~d~~Tp~~FDN~Yy~~l~  268 (333)
                      |||||||||||++||.+|.+||  |||+|++.+||+||+.|++.||+.||..++  +++.++||+.||.+|||+||+||+
T Consensus       162 ~VaLsGaHTiG~ahC~~f~~Rl--y~f~~~~~~DP~ld~~~a~~L~~~Cp~~~~~~~~~~~~lD~~TP~~FDN~Yy~nL~  239 (304)
T 3hdl_A          162 MVTLSGAHSIGVAHCSSFTNRL--YNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQ  239 (304)
T ss_dssp             HHHHGGGGGSSEEEGGGTGGGT--SSCSSSSSSCTTSCHHHHHHHHHHSCTTCCTTSCCEEESCSSSTTSCSTHHHHHHH
T ss_pred             hhhhhccccccccccchhhhhh--cccCCCCCCCCcccHHHHHHHhccCCCCCCCCCccccCCCCCCcccccHHHHHHHH
Confidence            9999999999999999999999  999999889999999999999999998655  566789999999999999999999


Q ss_pred             hCcccccchhhhccChhhHHHHHHhhhCHHHHHHHHHHHHHHHhcCCCCCCCCCcccccccCCCC
Q 019972          269 AHKGLFQSDSVLLHDERTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQTCSMTNG  333 (333)
Q Consensus       269 ~~~glL~SD~~L~~d~~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~lgv~tg~~GeIR~~C~~~N~  333 (333)
                      .++|||+|||+|+.|++|+++|++||.||++|+++|++||+||++||||||.+||||++|+++|+
T Consensus       240 ~~~glL~SDq~L~~d~~t~~~V~~yA~~~~~F~~~Fa~AmvKmg~igv~tg~~GeIR~~C~~~N~  304 (304)
T 3hdl_A          240 LTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSVVNS  304 (304)
T ss_dssp             TTCCCSHHHHGGGSSHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTTCCCTTSSBCCSBTTBCC-
T ss_pred             hCcCCCCCCHHHhcCccHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCCCCCCCeeeCCccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999995
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Back     alignment and structure
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* 4fcn_A* 4g05_A* 4fcs_A* 4fef_A* 4fdq_A* Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* 4ged_A* Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} SCOP: a.93.1.0 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} SCOP: a.93.1.1 PDB: 4a71_A* 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 4a6z_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* ... Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>1u2k_A Peroxidase/catalase HPI; KATG, catalase-peroxidase, C-terminal domain, oxidoreductase; 2.00A {Escherichia coli} SCOP: a.93.1.3 PDB: 1u2l_A 1u2j_A Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana} Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 333
d1fhfa_304 a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine m 1e-103
d1pa2a_306 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 1e-102
d1qgja_300 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 1e-99
d1gwua_307 a.93.1.1 (A:) Plant peroxidase {Horseradish (Armor 2e-98
d1bgpa_309 a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vu 1e-95
d1scha_294 a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hy 3e-95
d1yyda1357 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) { 1e-54
d2e39a1336 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) { 2e-54
d1llpa_343 a.93.1.1 (A:) Fungal peroxidase (ligninase) {White 8e-52
d2euta1291 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {B 9e-41
d1iyna_275 a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco 1e-38
d1oafa_250 a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glyci 5e-37
d1mwva1406 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burk 1e-05
d1itka1406 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Arch 6e-05
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 304 Back     information, alignment and structure

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

 Score =  303 bits (776), Expect = e-103
 Identities = 121/305 (39%), Positives = 168/305 (55%), Gaps = 8/305 (2%)

Query: 35  LSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNGT- 93
           L+  FY  +CP+   +V   +  AS  D  I   L+RL FHDCFV+GCD SVLL    T 
Sbjct: 2   LTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTI 61

Query: 94  --ERSDPANA-SLGGFEVIDSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPT 150
             E+    N  S+ G +V++  K  +E  CP TVSCADI+A+AA  +  + GGP   +P 
Sbjct: 62  ESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPL 121

Query: 151 GRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMDDLVTLSGAHTIGSAHCNAFND 210
           GRRD   +       N+    F + ++  +F+ +GL+  DLVTLSG HT G A C+ F +
Sbjct: 122 GRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFIN 181

Query: 211 RFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLAH 270
           R            D +L+++Y   L  +CP NA+     N D  T   FDN+YY NLL  
Sbjct: 182 RLYNFSNT--GNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQL 239

Query: 271 KGLFQSDSVLLHDE--RTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQTC 328
            GL QSD  L       T   V +F+++Q +FFSN+ +S +K+ +IGV T DEGEIR  C
Sbjct: 240 NGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQC 299

Query: 329 SMTNG 333
           +  NG
Sbjct: 300 NFVNG 304
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Length = 306 Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Length = 300 Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Length = 307 Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Length = 309 Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Length = 294 Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 357 Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Length = 336 Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 343 Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 291 Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 275 Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 250 Back     information, alignment and structure
>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Length = 406 Back     information, alignment and structure
>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 406 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query333
d1fhfa_304 Plant peroxidase {Soybean (Glycine max) [TaxId: 38 100.0
d1pa2a_306 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1qgja_300 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1gwua_307 Plant peroxidase {Horseradish (Armoracia rusticana 100.0
d1bgpa_309 Plant peroxidase {Barley (Hordeum vulgare), peroxi 100.0
d1scha_294 Plant peroxidase {Peanut (Arachis hypogaea) [TaxId 100.0
d1iyna_275 Ascorbate peroxidase {Common tobacco (Nicotiana ta 100.0
d1yyda1357 Fungal peroxidase (ligninase) {Basidomycetos fungu 100.0
d2e39a1336 Fungal peroxidase (ligninase) {Arthromyces ramosus 100.0
d1oafa_250 Ascorbate peroxidase {Soybean (Glycine max) [TaxId 100.0
d1llpa_343 Fungal peroxidase (ligninase) {White rot basidiomy 100.0
d2euta1291 Cytochrome c peroxidase, CCP {Baker's yeast (Sacch 100.0
d1mwva2308 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d1u2ka_292 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d1itka1406 Catalase-peroxidase KatG {Archaeon Haloarcula mari 100.0
d1ub2a2294 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 100.0
d1itka2308 Catalase-peroxidase KatG {Archaeon Haloarcula mari 100.0
d1mwva1406 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d2ccaa1410 Catalase-peroxidase KatG {Mycobacterium tuberculos 100.0
d1ub2a1406 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 100.0
d2ccaa2285 Catalase-peroxidase KatG {Mycobacterium tuberculos 99.98
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

Probab=100.00  E-value=1.8e-104  Score=757.18  Aligned_cols=298  Identities=40%  Similarity=0.671  Sum_probs=289.0

Q ss_pred             CCCcccccccChhHHHHHHHHHHhhhhcCCCchhhHHHHhhhcccccCCCceeecCCCC---CCCCCcCCCC-CchhHHH
Q 019972           34 SLSFNFYAASCPSAEFMVANTVRSASSFDRTIPGKLLRLLFHDCFVEGCDASVLLQGNG---TERSDPANAS-LGGFEVI  109 (333)
Q Consensus        34 ~l~~~fY~~sCP~~e~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv~GcDgSill~~~~---~E~~~~~N~~-l~g~~~I  109 (333)
                      ||+.+||++|||++|+||+++|++++.+|++++|++|||+||||||+||||||||+++.   +|+++++|.+ ++||++|
T Consensus         1 qL~~~~Y~~sCp~~e~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDgSill~~~~~~~~E~~~~~N~~~~~g~~~i   80 (304)
T d1fhfa_           1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTIESEQDALPNINSIRGLDVV   80 (304)
T ss_dssp             CCBTTTTTTTSTTHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTTCSSSGGGCCCCSSCCCGGGSTTTTTTCCCHHHH
T ss_pred             CCCCccccccCcCHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhccCCCCeeEeecCCCCccccccCCcccccchhHHHH
Confidence            79999999999999999999999999999999999999999999999999999999865   7999999975 5999999


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHhhHHHHHHcCCCcccCCCCCCCCCCccccccccCCCCCCCCHHHHHHHHHhCCCCCC
Q 019972          110 DSAKRVLEIFCPGTVSCADIIALAARDSVEIAGGPAIQIPTGRRDGRASAAENVRANIVDTTFTMNEMIKAFSSKGLSMD  189 (333)
Q Consensus       110 ~~iK~~le~~cp~~VScADilalAar~aV~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~  189 (333)
                      +.||++||++||++|||||||+||||+||+.+|||.|+|++||+|+++|+..++..+||.|+.++++|++.|++|||+.+
T Consensus        81 d~iK~~le~~cp~~VScADIlalAardAv~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~  160 (304)
T d1fhfa_          81 NDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTL  160 (304)
T ss_dssp             HHHHHHHHTTSTTTSCHHHHHHHHHHHHHHTTTCCCCCCCBCCCBCSCCCHHHHHHHSCCTTCCHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHhhCCCccCHHHHHHHHHhhhhhhcCCCcccccCCCcCcCccccccccccCCCCCCCHHHHHHHHHHcCCCHH
Confidence            99999999999999999999999999999999999999999999999998888888999999999999999999999999


Q ss_pred             CceeeeccccccccccccccccccCCCCCCCcCCCCcCCHHHHHHHhhhCCCCCCCCccccCCCCCccccchHHHHHhhh
Q 019972          190 DLVTLSGAHTIGSAHCNAFNDRFREDPKGKLTLIDTSLDSSYANELMRKCPANASSSVTVNNDPETSFVFDNQYYRNLLA  269 (333)
Q Consensus       190 dlVaLsGaHTiG~~hc~~f~~Rl~~~nf~g~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~Tp~~FDN~Yy~~l~~  269 (333)
                      ||||||||||||++||.+|..|+  |+|.+++.+||++|+.|+..|++.||.++...+.+++|+.||.+|||+||++++.
T Consensus       161 d~VaLsGaHTiG~ahc~~~~~rl--~~~~~~~~~d~~~~~~~~~~L~~~c~~~~~~~~~~~~d~~tp~~fDn~Yy~~l~~  238 (304)
T d1fhfa_         161 DLVTLSGGHTFGRARCSTFINRL--YNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQ  238 (304)
T ss_dssp             HHHHHGGGGGSCEEEGGGTGGGT--SCGGGSSSCCTTSCHHHHHHHHHHSCSSCSSCCEEESCSSSTTSCSTHHHHHHHT
T ss_pred             HHHHHhhhhhhcccccccccccc--cCCCCCCCCCcccCHHHHHHHHHhcCCCCCCCcccccCCCCCCccccHHHHHHhh
Confidence            99999999999999999999999  9999998899999999999999999987766678899999999999999999999


Q ss_pred             CcccccchhhhccCh--hhHHHHHHhhhCHHHHHHHHHHHHHHHhcCCCCCCCCCcccccccCCCC
Q 019972          270 HKGLFQSDSVLLHDE--RTRKQVENFANDQESFFSNWGLSFLKVTSIGVKTEDEGEIRQTCSMTNG  333 (333)
Q Consensus       270 ~~glL~SD~~L~~d~--~t~~~V~~yA~~~~~F~~~Fa~Am~Km~~lgv~tg~~GeIR~~C~~~N~  333 (333)
                      ++|+|+|||+|+.|+  +|+++|++||.||++|+++|++||+||++||||||.+||||++|+++||
T Consensus       239 ~~glL~SD~~L~~dp~~~t~~~V~~yA~d~~~F~~~F~~Am~Km~~lgv~tg~~GeiR~~C~~~N~  304 (304)
T d1fhfa_         239 LNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNFVNG  304 (304)
T ss_dssp             TCCSSHHHHTTTSSTTCSSHHHHHHHHHCHHHHHHHHHHHHHHHTTTTCCCTTSSBCCSBTTBCCC
T ss_pred             cCcccHhhHHHHhCCCchHHHHHHHHhhCHHHHHHHHHHHHHHHhcCCCCCCCCCcccCcccCcCC
Confidence            999999999999997  7999999999999999999999999999999999999999999999997
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure