Citrus Sinensis ID: 019978

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
Protein Sequence
MVQTNEVVNDSLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVMHGMGRSWQKGD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHHHccccccccEEEEEEccHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHccccccccccccccEEEEccHHHHHccccEEEEEcccHHHHHHHHHHHHHHcccccccEEEEEEEccccccccccccccHHHHHHHHHccccccEEEEcccccHHHHHcccccEEEEccccccHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEcccccccccccccccHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHHccccccccEEEEEEccHHHHHHHHHHHHHHHHccHHHHHHHHHHcHHHccccccccccccccHHHccccccccccccccccccEEcccHHHHHccccEEEEEEccHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccEEcHHHHHHHHccccHccEEEEEcHHHHHHHHHccccEEEEEccHHHHHHHHHHHHcccEEEEccccEEEEHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mvqtnevvndslssnglihhtngsLEERLDELRRLMgkaegdplrivgvgagAWGSVFTAMLQDSYGYLRDKVLIRIwrrpgrsvdrATAEHLFEVINSREDVLRRLIRRCAYLKYVEARlgdrtlhadeilkdgfclnmidtplcplkVVTNLQEavwdadivinglpstetKEVFEEISRYWKERITVPVIISLAKGVeaeleavpriitptqminratgvpienilylggpniaseIYNKEYANARICGAEKWRKPLAkflrrphftvwdngdlvtHEVMGGLKNVYAIGAGMVAALTNesatsksvYFAHCTSEMVVMhgmgrswqkgd
Flexible Loop (DISEMBL)
mvqtnevvndslssnglihhtngsLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWrrpgrsvdrataehlfevinsredVLRRLIRRCAYLKYvearlgdrtlhaDEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADivinglpstetkEVFEEISRywkeritvPVIISLAKGVEAeleavpriitptqminraTGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVMHGMGRSWQKGD
Low Complexity Region (SEG)
MVQTNEVVNDSLSSNGLIHHTNGSleerldelrrlMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVMHGMGRSWQKGD
Disordered region (IsUnstruct)
***************************************EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVMHG*********
Disordered Region (DISOPRED)
********************************************RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVMHGMGRSWQK**
Disordered Region (DISEMBL)
*********DSLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVMHGM********
Disordered Region (DISPRO)
***TNEVVNDSLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVMHGMGRSW****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVQTNEVVNDSLSSNGLIHHTxxxxxxxxxxxxxxxxxxxxxPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVMHGMGRSWQKGD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	333	2.2.26 [Sep-21-2011]
O22216	462	Glycerol-3-phosphate dehy	yes	no	0.936	0.675	0.842	1e-160
Q8S0G4	456	Probable glycerol-3-phosp	yes	no	0.933	0.682	0.849	1e-158
Q8S2G5	467	Probable glycerol-3-phosp	no	no	0.909	0.648	0.858	1e-158
Q65X70	465	Probable glycerol-3-phosp	no	no	0.885	0.634	0.854	1e-152
Q3V7H1	357	Glycerol-3-phosphate dehy	yes	no	0.540	0.504	0.343	9e-13
Q0SE35	335	Glycerol-3-phosphate dehy	yes	no	0.642	0.638	0.269	7e-11
P61738	331	Glycerol-3-phosphate dehy	yes	no	0.426	0.429	0.307	8e-11
B0V862	357	Glycerol-3-phosphate dehy	yes	no	0.480	0.448	0.312	1e-10
A3M6Y6	357	Glycerol-3-phosphate dehy	yes	no	0.480	0.448	0.312	1e-10
B2HUU0	357	Glycerol-3-phosphate dehy	yes	no	0.480	0.448	0.312	1e-10

>sp|O22216|GPDHC_ARATH Glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic OS=Arabidopsis thaliana GN=GPDHC1 PE=2 SV=1

 Score =  564 bits (1453), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 263/312 (84%), Positives = 289/312 (92%)

Query: 11  SLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLR 70
           SL SNG +HH   +LEE+LDE RRL+GK+E DPLRIV VGAGAWGSVF A+LQ+SYG  R
Sbjct: 9   SLQSNGSVHHIGLNLEEKLDEFRRLLGKSEKDPLRIVSVGAGAWGSVFAALLQESYGGFR 68

Query: 71  DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADE 130
           DK  IRIWRR GR+VDR TAEHLFEVINSRED+LRRLIRRCAYLKYVEARLGDRTL+ADE
Sbjct: 69  DKFQIRIWRRAGRAVDRETAEHLFEVINSREDILRRLIRRCAYLKYVEARLGDRTLYADE 128

Query: 131 ILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITV 190
           ILKDGFCLNM+DTPLCPLKVVTNLQEAVWDADIV+NGLPSTET+EVFEEIS+YWKERITV
Sbjct: 129 ILKDGFCLNMVDTPLCPLKVVTNLQEAVWDADIVVNGLPSTETREVFEEISKYWKERITV 188

Query: 191 PVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI 250
           P+IISL+KG+E  LE VP IITPT+MI++ATGVPI+N+LYLGGPNIA+EIYNKEYANARI
Sbjct: 189 PIIISLSKGIETALEPVPHIITPTKMIHQATGVPIDNVLYLGGPNIAAEIYNKEYANARI 248

Query: 251 CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 310
           CGA KWRKPLAKFLR+PHF VWDN DLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV
Sbjct: 249 CGAAKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 308

Query: 311 YFAHCTSEMVVM 322
           YFAHCTSEM+ +
Sbjct: 309 YFAHCTSEMIFI 320

Involved in cell redox homeostasis. Required for maintaining a steady state cellular NADH/NAD(+) ratio through a mitochondrial glycerol-3-phosphate redox shuttle. May function with the mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase SDP6 to shuttle reducing equivalents into the mitochondria for respiration.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8

>sp|Q8S0G4|GPDH1_ORYSJ Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic OS=Oryza sativa subsp. japonica GN=Os01g0939600 PE=2 SV=1

 Score =  559 bits (1440), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 265/312 (84%), Positives = 291/312 (93%), Gaps = 1/312 (0%)

Query: 11  SLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLR 70
           S+  NG ++  NG+ EERLDELRRL+GK++GD L+IVG+GAGAWGSVF A+LQD+YG  R
Sbjct: 4   SVHVNGSVNGGNGT-EERLDELRRLLGKSDGDLLKIVGIGAGAWGSVFAALLQDAYGRFR 62

Query: 71  DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADE 130
           +KV IRIWRR GRSVDR TAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTL+ADE
Sbjct: 63  EKVQIRIWRRAGRSVDRTTAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLYADE 122

Query: 131 ILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITV 190
           IL+DGFCLNMIDTPLCPLKVVTNLQEAVWDADIV+NGLPSTET+EVFEEIS+YWKERI+V
Sbjct: 123 ILRDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVVNGLPSTETREVFEEISKYWKERISV 182

Query: 191 PVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI 250
           PVIISLAKG+EA L+ +PRIITPTQMI+ ATGVP ENILYLGGPNIASEIYNKEYANARI
Sbjct: 183 PVIISLAKGIEASLDPIPRIITPTQMISSATGVPTENILYLGGPNIASEIYNKEYANARI 242

Query: 251 CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 310
           CG+ KWRKPLAKFLR+PHF VWDN DLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV
Sbjct: 243 CGSNKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 302

Query: 311 YFAHCTSEMVVM 322
           YFAHCTSEM+ +
Sbjct: 303 YFAHCTSEMIFI 314

May be involved in cell redox homeostasis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

>sp|Q8S2G5|GPDH2_ORYSJ Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 2, cytosolic OS=Oryza sativa subsp. japonica GN=Os01g0801600 PE=2 SV=1

 Score =  557 bits (1435), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 261/304 (85%), Positives = 289/304 (95%), Gaps = 1/304 (0%)

Query: 20  HTNG-SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW 78
           H NG ++EE+LDELRRL+GKA+GDPLRIVGVGAGAWGSVF A++QD+YG+LRDKV +RIW
Sbjct: 16  HGNGATVEEKLDELRRLLGKADGDPLRIVGVGAGAWGSVFCALMQDAYGHLRDKVQVRIW 75

Query: 79  RRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCL 138
           RRPGR+VDRATAEHLFEVIN+REDVLRRLIRRCAYLKYVE RLGDRTL+ADEIL+DGFCL
Sbjct: 76  RRPGRAVDRATAEHLFEVINAREDVLRRLIRRCAYLKYVEGRLGDRTLYADEILRDGFCL 135

Query: 139 NMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198
           NMIDTPLCPLKVVTNLQEAVWDADIVINGLPST+T+EVF EI RYWKERIT P+I+SLAK
Sbjct: 136 NMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTDTREVFGEIGRYWKERITAPIILSLAK 195

Query: 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRK 258
           G+EA L+ +PRIITPTQMI+ ATGVP+ENILYLGGPNIASEIYNKEYANARICGA+KWRK
Sbjct: 196 GIEASLDPLPRIITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRK 255

Query: 259 PLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSE 318
           PLAKFLR+PHF VWDN DL+THEVMGGLKNVYAIGAGMVAALTNESATSKSVYFA CTSE
Sbjct: 256 PLAKFLRQPHFIVWDNSDLITHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFALCTSE 315

Query: 319 MVVM 322
           M+ +
Sbjct: 316 MIYI 319

May be involved in cell redox homeostasis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

>sp|Q65X70|GPDH3_ORYSJ Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 3, cytosolic OS=Oryza sativa subsp. japonica GN=Os05g0495700 PE=2 SV=1

 Score =  536 bits (1382), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 252/295 (85%), Positives = 275/295 (93%)

Query: 28  RLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87
           +LDELRR MGKA+GD LRIVGVG GAWGS F A+LQD+YG  RDK  +R+WRRPGR+VDR
Sbjct: 22  KLDELRRRMGKADGDLLRIVGVGGGAWGSAFCALLQDAYGRHRDKAQVRVWRRPGRAVDR 81

Query: 88  ATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCP 147
           ATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTL+ADEIL+DGFCLNM+DTPLCP
Sbjct: 82  ATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLYADEILRDGFCLNMVDTPLCP 141

Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAV 207
           LKVVTNLQEAVWDADIVINGLPSTET+EVF EI RYWKERI  PVIISLAKG+EA ++ V
Sbjct: 142 LKVVTNLQEAVWDADIVINGLPSTETREVFGEIGRYWKERIRPPVIISLAKGIEASIDPV 201

Query: 208 PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRP 267
           PRIITPTQMI+ ATGVP+ENILYLGGPNIASEIYNKEYANARICGA+KWRKPLAKFLR+P
Sbjct: 202 PRIITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAKFLRQP 261

Query: 268 HFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM 322
           HF VWDN DL+THEVMGGLKN+YAIGAGMVAALTNESATSKSVYF+ CTSEM+ +
Sbjct: 262 HFIVWDNSDLITHEVMGGLKNIYAIGAGMVAALTNESATSKSVYFSLCTSEMIYI 316

May be involved in cell redox homeostasis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

>sp|Q3V7H1|GPDA_ACIAD Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Acinetobacter sp. (strain ADP1) GN=gpsA PE=3 SV=1

 Score = 74.7 bits (182), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/195 (34%), Positives = 94/195 (48%), Gaps = 15/195 (7%)

Query: 128 ADEILKDGFCLNMI-DTPLCP-LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWK 185
           ADEI +  F    + D  L P LK V++L+ AV D DI+   +PS   +EV ++IS Y  
Sbjct: 56  ADEINQTHFNQRYLPDFNLEPELKAVSDLELAVRDRDIIFVAIPSHSFREVVKQISPY-- 113

Query: 186 ERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEY 245
             IT   I+SL KG+EA   +    I   ++     GV       L GPN+A EI     
Sbjct: 114 --ITAQAIVSLTKGIEANTFSFMSDIIREELPEVPYGV-------LSGPNLAKEIVAGMP 164

Query: 246 ANARICG-AEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNES 304
           +   I   +E  R  +   L    F V+ + D+   E+ G LKN+YAI  GM AA  N  
Sbjct: 165 SGTVIASDSELVRYAVQHALHSALFRVFGSDDVHGVELGGALKNIYAIAMGMAAAY-NIG 223

Query: 305 ATSKSVYFAHCTSEM 319
             +KS+      +EM
Sbjct: 224 ENTKSMIITRALAEM 238

Acinetobacter sp. (strain ADP1) (taxid: 62977)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|Q0SE35|GPDA1_RHOSR Glycerol-3-phosphate dehydrogenase [NAD(P)+] 1 OS=Rhodococcus sp. (strain RHA1) GN=gpsA1 PE=3 SV=1

 Score = 68.6 bits (166), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 118/282 (41%), Gaps = 68/282 (24%)

Query: 43  PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSRED 102
           P+R+V +GAG+WG+    +   +   L       +W R   + D    EH     NSR  
Sbjct: 4   PVRVVVLGAGSWGTTVAGLAAHNTPTL-------LWARNSDTADEINNEHR----NSR-- 50

Query: 103 VLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDAD 162
                             LGDR L                     ++   +L EA  +AD
Sbjct: 51  -----------------YLGDRPLPDS------------------MRSTADLVEAAHEAD 75

Query: 163 IVINGLPSTETKEVFEEIS---RYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINR 219
           +++ G+PS   +    +I+   R W     VPV+ SLAKG+E         + PT++I  
Sbjct: 76  VLVVGVPSHAVRSTLAQIANEVRAW-----VPVL-SLAKGLEPGTR-----LRPTEVI-- 122

Query: 220 ATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWR--KPLAKFLRRPHFTVWDNGDL 277
           A  +P   +  L GPNIA EI +   A A +   +  R    L        F V+ N D+
Sbjct: 123 AECLPGHPVGLLAGPNIAREIVDG-LAAASVVATQDVRVATALQPLFASAVFRVYRNTDV 181

Query: 278 VTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEM 319
           +  E+ G LKN+ AI +GM   L +    ++++  A   +EM
Sbjct: 182 LGCELGGVLKNIVAIASGMADGL-DVGDNTRAMVLARGLAEM 222

Rhodococcus sp. (strain RHA1) (taxid: 101510)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|P61738|GPDA_CORDI Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) GN=gpsA PE=3 SV=1

 Score = 68.2 bits (165), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 11/153 (7%)

Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITV-PVIISLAKGVEAELEA 206
           L   T   +A+ DAD+V+  +PS   +    E    W   I    +++SLAKG+E E   
Sbjct: 58  LTATTQPTQALCDADVVVLAVPSQTLRGNLAE----WCADIPQDALLLSLAKGIEKET-- 111

Query: 207 VPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLR 265
               +  +++I   TG   + +  L GPN+A EI  ++ A   I C  EK  + +   L 
Sbjct: 112 ---FLRMSEVIAEVTGAQPDKVAVLSGPNLAREIAEEQPAATVIACTNEKNAQRIQHALA 168

Query: 266 RPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVA 298
            P+F  + N D++  E+ G  KNV A+  GM +
Sbjct: 169 APYFRPYTNTDVIGCEIGGACKNVIALACGMAS 201

Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) (taxid: 257309)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|B0V862|GPDA_ACIBY Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Acinetobacter baumannii (strain AYE) GN=gpsA PE=3 SV=1

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 13/173 (7%)

Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAV 207
           L+ V++L++AV D DI++  +PS   ++V ++I+ Y    IT   ++SL KGVEA+  + 
Sbjct: 78  LRAVSDLEQAVCDRDIILVAIPSHSFRDVLKQIAPY----ITAQAVVSLTKGVEAKTFSF 133

Query: 208 PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLRR 266
              I   ++     GV       L GPN+A EI     +   I   +E  R  +   L  
Sbjct: 134 MSDIIREELPEVPYGV-------LSGPNLAKEIMAGMPSGTVIASDSELVRYAVQHALHS 186

Query: 267 PHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEM 319
             F V+ + D+   E+ G LKN+YA+  G+ AA      T KS+      +EM
Sbjct: 187 ALFRVFGSDDVHGVELGGALKNIYAVAMGIGAAYKIGENT-KSMILTRALAEM 238

Acinetobacter baumannii (strain AYE) (taxid: 509173)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|A3M6Y6|GPDA_ACIBT Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=gpsA PE=3 SV=2

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 13/173 (7%)

Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAV 207
           L+ V++L++AV D DI++  +PS   ++V ++I+ Y    IT   ++SL KGVEA+  + 
Sbjct: 78  LRAVSDLEQAVCDRDIILVAIPSHSFRDVLKQIAPY----ITAQAVVSLTKGVEAKTFSF 133

Query: 208 PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLRR 266
              I   ++     GV       L GPN+A EI     +   I   +E  R  +   L  
Sbjct: 134 MSDIIREELPEVPYGV-------LSGPNLAKEIMAGMPSGTVIASDSELVRYAVQHALHS 186

Query: 267 PHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEM 319
             F V+ + D+   E+ G LKN+YA+  G+ AA      T KS+      +EM
Sbjct: 187 ALFRVFGSDDVHGVELGGALKNIYAVAMGIGAAYKIGENT-KSMILTRALAEM 238

Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) (taxid: 400667)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|B2HUU0|GPDA_ACIBC Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Acinetobacter baumannii (strain ACICU) GN=gpsA PE=3 SV=1

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 13/173 (7%)

Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAV 207
           L+ V++L++AV D DI++  +PS   ++V ++I+ Y    IT   ++SL KGVEA+  + 
Sbjct: 78  LRAVSDLEQAVCDRDIILVAIPSHSFRDVLKQIAPY----ITAQAVVSLTKGVEAKTFSF 133

Query: 208 PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLRR 266
              I   ++     GV       L GPN+A EI     +   I   +E  R  +   L  
Sbjct: 134 MSDIIREELPEVPYGV-------LSGPNLAKEIMAGMPSGTVIASDSELVRYAVQHALHS 186

Query: 267 PHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEM 319
             F V+ + D+   E+ G LKN+YA+  G+ AA      T KS+      +EM
Sbjct: 187 ALFRVFGSDDVHGVELGGALKNIYAVAMGIGAAYKIGENT-KSMILTRALAEM 238

Acinetobacter baumannii (strain ACICU) (taxid: 405416)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
TAIR|locus:2062734	462	GPDHC1 [Arabidopsis thaliana (	0.963	0.694	0.795	1.9e-138
TAIR|locus:2077387	466	AT3G07690 [Arabidopsis thalian	0.888	0.635	0.791	7.3e-130
UNIPROTKB|P95113	334	gpsA "Glycerol-3-phosphate deh	0.495	0.494	0.272	2.8e-09
UNIPROTKB|F1P0W8	380	GPD1L "Uncharacterized protein	0.441	0.386	0.315	5.8e-09
MGI|MGI:1289257	351	Gpd1l "glycerol-3-phosphate de	0.444	0.421	0.304	7.5e-09
UNIPROTKB|I3LLU0	351	GPD1L "Uncharacterized protein	0.441	0.418	0.309	1.5e-08
RGD|1560123	351	Gpd1l "glycerol-3-phosphate de	0.441	0.418	0.309	1.7e-08
UNIPROTKB|Q8N335	351	GPD1L "Glycerol-3-phosphate de	0.441	0.418	0.303	2.2e-08
UNIPROTKB|A6QQR7	351	GPD1L "GPD1L protein" [Bos tau	0.441	0.418	0.309	3e-08
UNIPROTKB|J9NS24	434	GPD1L "Uncharacterized protein	0.441	0.338	0.303	4.9e-08

TAIR|locus:2062734 GPDHC1 [Arabidopsis thaliana (taxid:3702)]

 Score = 1355 (482.0 bits), Expect = 1.9e-138, P = 1.9e-138
 Identities = 256/322 (79%), Positives = 283/322 (87%)

Query:    11 SLSSNGLIHHTNGSXXXXXXXXXXXMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLR 70
             SL SNG +HH   +           +GK+E DPLRIV VGAGAWGSVF A+LQ+SYG  R
Sbjct:     9 SLQSNGSVHHIGLNLEEKLDEFRRLLGKSEKDPLRIVSVGAGAWGSVFAALLQESYGGFR 68

Query:    71 DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADE 130
             DK  IRIWRR GR+VDR TAEHLFEVINSRED+LRRLIRRCAYLKYVEARLGDRTL+ADE
Sbjct:    69 DKFQIRIWRRAGRAVDRETAEHLFEVINSREDILRRLIRRCAYLKYVEARLGDRTLYADE 128

Query:   131 ILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITV 190
             ILKDGFCLNM+DTPLCPLKVVTNLQEAVWDADIV+NGLPSTET+EVFEEIS+YWKERITV
Sbjct:   129 ILKDGFCLNMVDTPLCPLKVVTNLQEAVWDADIVVNGLPSTETREVFEEISKYWKERITV 188

Query:   191 PVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI 250
             P+IISL+KG+E  LE VP IITPT+MI++ATGVPI+N+LYLGGPNIA+EIYNKEYANARI
Sbjct:   189 PIIISLSKGIETALEPVPHIITPTKMIHQATGVPIDNVLYLGGPNIAAEIYNKEYANARI 248

Query:   251 CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 310
             CGA KWRKPLAKFLR+PHF VWDN DLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV
Sbjct:   249 CGAAKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 308

Query:   311 YFAHCTSEMV-VMHGMGRSWQK 331
             YFAHCTSEM+ + H +    +K
Sbjct:   309 YFAHCTSEMIFITHLLAEEPEK 330

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA;ISS

GO:0009331 "glycerol-3-phosphate dehydrogenase complex" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0046168 "glycerol-3-phosphate catabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA;TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2077387 AT3G07690 [Arabidopsis thaliana (taxid:3702)]

 Score = 1274 (453.5 bits), Expect = 7.3e-130, P = 7.3e-130
 Identities = 243/307 (79%), Positives = 270/307 (87%)

Query:    36 MGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFE 95
             MGKA+ DPLRIVGVGAGAWGSVF AMLQ++YG  R KV +RIWRR GR++D+ATAEHLFE
Sbjct:    27 MGKADDDPLRIVGVGAGAWGSVFIAMLQENYGKFRGKVSVRIWRRGGRAIDKATAEHLFE 86

Query:    96 VINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQ 155
             VINSRE++LRRLIRRCAYLKYVEARLGDR L+ADEILKDGFCLNMI+TPLCPLKVVTNLQ
Sbjct:    87 VINSREELLRRLIRRCAYLKYVEARLGDRVLYADEILKDGFCLNMIETPLCPLKVVTNLQ 146

Query:   156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQ 215
             EAVWDADIVINGLPSTET +VF EIS+YWKER+  PVIISLAKGVEAE E  PRI+TPTQ
Sbjct:   147 EAVWDADIVINGLPSTETFQVFNEISKYWKERVNAPVIISLAKGVEAEFEPHPRIVTPTQ 206

Query:   216 MINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG 275
             MI+RATG+P+ENILYLGGPNIASE+YNKEYANARICG+EKWRKPL KFLR+ HF VWDN 
Sbjct:   207 MIHRATGIPLENILYLGGPNIASEVYNKEYANARICGSEKWRKPLGKFLRQSHFIVWDNS 266

Query:   276 DLVTHEVMGGLKNVYAIGA----------GMVAALTNESATSKSVYFAHCTSEMV-VMHG 324
             DL+THEVMGGLKNVYAIGA          GMVA LT ESATSKSVYFAHCTSEM+ + H 
Sbjct:   267 DLITHEVMGGLKNVYAIGAVFVLAFLYSTGMVATLTKESATSKSVYFAHCTSEMIFITHL 326

Query:   325 MGRSWQK 331
             + +  +K
Sbjct:   327 LAKEPEK 333

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA;ISS

GO:0009331 "glycerol-3-phosphate dehydrogenase complex" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0046168 "glycerol-3-phosphate catabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=IMP

UNIPROTKB|P95113 gpsA "Glycerol-3-phosphate dehydrogenase [NAD(P)+]" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 146 (56.5 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
 Identities = 48/176 (27%), Positives = 83/176 (47%)

Query:   128 ADEILKDGFCLNMIDTPLCP--LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWK 185
             AD+I    +  + +   L P  +    + +EA+  A  V+ G+P+   +   E  +    
Sbjct:    41 ADQINTTRYNPDYLPGALLPPSIHATADAEEALGGASTVLLGVPAQTMRANLERWAPLLP 100

Query:   186 ERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEY 245
             E  T   ++SLAKG+E  L  + R+   +Q+I   TG     +  + GPN+ASEI   + 
Sbjct:   101 EGAT---LVSLAKGIE--LGTLMRM---SQVIISVTGAEPPQVAVISGPNLASEIAECQP 152

Query:   246 ANARICGAEKWRK-PLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAAL 300
             A   +  ++  R   L + L   +F  + N D+V  E+ G  KN+ A+  GM   +
Sbjct:   153 AATVVACSDSGRAVALQRALNSGYFRPYTNADVVGTEIGGACKNIIALACGMAVGI 208

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1P0W8 GPD1L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 141 (54.7 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
 Identities = 52/165 (31%), Positives = 85/165 (51%)

Query:   151 VTNLQEAVWDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGVEAELEAVPR 209
             V NL EAV DAD+++  +P     +V +EI+ R  K+ +     I+L KG++   E +  
Sbjct:   107 VPNLNEAVQDADLLVFVVPHQFIHKVCDEITGRVPKKALG----ITLIKGIDEGPEGLKL 162

Query:   210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLA--KFLRRP 267
             I   + +I    G+ I  ++   G NIA+E+  +++    I G++     L   + L+ P
Sbjct:   163 I---SDIIREKMGIDISVLM---GANIANEVAAEKFCETTI-GSKILENGLLFKELLQTP 215

Query:   268 HF--TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 310
             +F  TV D+ D V  E+ G LKN+ A+GAG    L     T  +V
Sbjct:   216 NFRITVVDDADTV--ELCGALKNIVAVGAGFCDGLRCGDNTKAAV 258

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0009331 "glycerol-3-phosphate dehydrogenase complex" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0046168 "glycerol-3-phosphate catabolic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0006734 "NADH metabolic process" evidence=IEA

MGI|MGI:1289257 Gpd1l "glycerol-3-phosphate dehydrogenase 1-like" [Mus musculus (taxid:10090)]

 Score = 145 (56.1 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
 Identities = 50/164 (30%), Positives = 85/164 (51%)

Query:   151 VTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRI 210
             V NL EAV DAD+++  +P     ++ +EI+    E+    + I+L KG++   + +  I
Sbjct:    78 VPNLSEAVQDADLLVFVIPHQFIHKICDEITGRVPEKA---LGITLIKGIDEGPDGLKLI 134

Query:   211 ITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLA--KFLRRPH 268
                + +I    G+ I  ++   G NIASE+  +++    I G++  +  L   + L+ P+
Sbjct:   135 ---SDIIREKMGIDISVLM---GANIASEVAAEKFCETTI-GSKVMQNGLLFKELLQTPN 187

Query:   269 F--TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 310
             F  TV D+ D V  E+ G LKN+ A+GAG    L     T  +V
Sbjct:   188 FRITVVDDADTV--ELCGALKNIVAVGAGFCDGLRCGDNTKAAV 229

GO:0000166 "nucleotide binding" evidence=IEA

GO:0002027 "regulation of heart rate" evidence=ISO

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0006734 "NADH metabolic process" evidence=IMP

GO:0009331 "glycerol-3-phosphate dehydrogenase complex" evidence=IEA

GO:0010765 "positive regulation of sodium ion transport" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0017080 "sodium channel regulator activity" evidence=ISO

GO:0019674 "NAD metabolic process" evidence=ISO

GO:0033137 "negative regulation of peptidyl-serine phosphorylation" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0044325 "ion channel binding" evidence=ISO

GO:0046168 "glycerol-3-phosphate catabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0060373 "regulation of ventricular cardiac muscle cell membrane depolarization" evidence=ISO

GO:0086005 "regulation of ventricular cardiac muscle cell action potential" evidence=ISO

GO:0090038 "negative regulation of protein kinase C signaling cascade" evidence=ISO

GO:2000010 "positive regulation of protein localization to cell surface" evidence=ISO

GO:2000649 "regulation of sodium ion transmembrane transporter activity" evidence=ISO

UNIPROTKB|I3LLU0 GPD1L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 138 (53.6 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
 Identities = 51/165 (30%), Positives = 83/165 (50%)

Query:   151 VTNLQEAVWDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGVEAELEAVPR 209
             V NL EAV DAD+++  +P      + +EI+ R  K+ +     I+L KG++   E +  
Sbjct:    78 VANLGEAVKDADLLVFVIPHQFIHRICDEITGRVPKDALG----ITLIKGIDEGPEGLKL 133

Query:   210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLA--KFLRRP 267
             I   + +I    G+ I  ++   G NIA+E+   ++    I G++     L   + L+ P
Sbjct:   134 I---SDIIREKMGIDISVLM---GANIANEVAAGKFCETTI-GSKVMENGLLFKELLQTP 186

Query:   268 HF--TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 310
             +F  TV D+ D V  E+ G LKN+ A+GAG    L     T  +V
Sbjct:   187 NFRITVVDDADTV--ELCGALKNIVAVGAGFCDGLRCGDNTKAAV 229

GO:0006734 "NADH metabolic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0046168 "glycerol-3-phosphate catabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0009331 "glycerol-3-phosphate dehydrogenase complex" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

RGD|1560123 Gpd1l "glycerol-3-phosphate dehydrogenase 1-like" [Rattus norvegicus (taxid:10116)]

 Score = 142 (55.0 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
 Identities = 51/165 (30%), Positives = 86/165 (52%)

Query:   151 VTNLQEAVWDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGVEAELEAVPR 209
             V NL EAV DAD+++  +P     ++ +EI+ R  K+ +     I+L KG++   + +  
Sbjct:    78 VPNLGEAVQDADLLVFVIPHQFIHKICDEITGRVPKKAVG----ITLIKGIDEGPDGLKL 133

Query:   210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLA--KFLRRP 267
             I   + +I    G+ I  ++   G NIASE+  +++    I G++  +  L   + L+ P
Sbjct:   134 I---SDIIREKMGIDISVLM---GANIASEVAAEKFCETTI-GSKVLQNGLLFKELLQTP 186

Query:   268 HF--TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 310
             +F  TV D+ D V  E+ G LKN+ A+GAG    L     T  +V
Sbjct:   187 NFRITVVDDADTV--ELCGALKNIVAVGAGFCDGLCCGDNTKAAV 229

GO:0002027 "regulation of heart rate" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006734 "NADH metabolic process" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0009331 "glycerol-3-phosphate dehydrogenase complex" evidence=IEA

GO:0010765 "positive regulation of sodium ion transport" evidence=ISO

GO:0017080 "sodium channel regulator activity" evidence=ISO

GO:0019674 "NAD metabolic process" evidence=ISO

GO:0033137 "negative regulation of peptidyl-serine phosphorylation" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0044325 "ion channel binding" evidence=ISO

GO:0046168 "glycerol-3-phosphate catabolic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0060373 "regulation of ventricular cardiac muscle cell membrane depolarization" evidence=ISO

GO:0086005 "regulation of ventricular cardiac muscle cell action potential" evidence=ISO

GO:0090038 "negative regulation of protein kinase C signaling cascade" evidence=ISO

GO:2000010 "positive regulation of protein localization to cell surface" evidence=ISO

GO:2000649 "regulation of sodium ion transmembrane transporter activity" evidence=ISO

UNIPROTKB|Q8N335 GPD1L "Glycerol-3-phosphate dehydrogenase 1-like protein" [Homo sapiens (taxid:9606)]

 Score = 141 (54.7 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
 Identities = 50/165 (30%), Positives = 85/165 (51%)

Query:   151 VTNLQEAVWDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGVEAELEAVPR 209
             ++NL EAV DAD+++  +P      + +EI+ R  K+ +     I+L KG++   E +  
Sbjct:    78 MSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALG----ITLIKGIDEGPEGLKL 133

Query:   210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLA--KFLRRP 267
             I   + +I    G+ I  ++   G NIA+E+  +++    I G++     L   + L+ P
Sbjct:   134 I---SDIIREKMGIDISVLM---GANIANEVAAEKFCETTI-GSKVMENGLLFKELLQTP 186

Query:   268 HF--TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 310
             +F  TV D+ D V  E+ G LKN+ A+GAG    L     T  +V
Sbjct:   187 NFRITVVDDADTV--ELCGALKNIVAVGAGFCDGLRCGDNTKAAV 229

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0009331 "glycerol-3-phosphate dehydrogenase complex" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0046168 "glycerol-3-phosphate catabolic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

GO:0006734 "NADH metabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0006644 "phospholipid metabolic process" evidence=TAS

GO:0006654 "phosphatidic acid biosynthetic process" evidence=TAS

GO:0019432 "triglyceride biosynthetic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046474 "glycerophospholipid biosynthetic process" evidence=TAS

GO:0017080 "sodium channel regulator activity" evidence=IMP

GO:0033137 "negative regulation of peptidyl-serine phosphorylation" evidence=IMP

GO:0044325 "ion channel binding" evidence=IPI

GO:0010765 "positive regulation of sodium ion transport" evidence=IMP

GO:0090038 "negative regulation of protein kinase C signaling cascade" evidence=IMP

GO:2000010 "positive regulation of protein localization to cell surface" evidence=IMP

GO:0002027 "regulation of heart rate" evidence=IMP

GO:0086005 "regulation of ventricular cardiac muscle cell action potential" evidence=IMP

GO:2000649 "regulation of sodium ion transmembrane transporter activity" evidence=IMP

GO:0060373 "regulation of ventricular cardiac muscle cell membrane depolarization" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0019674 "NAD metabolic process" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|A6QQR7 GPD1L "GPD1L protein" [Bos taurus (taxid:9913)]

 Score = 140 (54.3 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
 Identities = 51/165 (30%), Positives = 83/165 (50%)

Query:   151 VTNLQEAVWDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGVEAELEAVPR 209
             V NL EAV DAD+++  +P      + +EI+ R  K+ +     I+L KG++   E +  
Sbjct:    78 VANLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKDALG----ITLIKGIDEGPEGLKL 133

Query:   210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLA--KFLRRP 267
             I   + +I    G+ I  ++   G NIA+E+   ++    I G++     L   + L+ P
Sbjct:   134 I---SDIIREKMGIDISVLM---GANIANEVAAGKFCETTI-GSKIMENGLLFKELLQTP 186

Query:   268 HF--TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 310
             +F  TV D+ D V  E+ G LKN+ A+GAG    L     T  +V
Sbjct:   187 NFRITVVDDADTV--ELCGALKNIVAVGAGFCDGLLCGDNTKAAV 229

GO:0006734 "NADH metabolic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0046168 "glycerol-3-phosphate catabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0009331 "glycerol-3-phosphate dehydrogenase complex" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

UNIPROTKB|J9NS24 GPD1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 142 (55.0 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
 Identities = 50/165 (30%), Positives = 85/165 (51%)

Query:   151 VTNLQEAVWDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGVEAELEAVPR 209
             V NL EAV DAD+++  +P      + +E++ R  K+ +     I+L KG++   E +  
Sbjct:   161 VPNLGEAVKDADLLVFVIPHQFIHRICDELTGRVPKDALG----ITLIKGIDEGPEGLKL 216

Query:   210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLA--KFLRRP 267
             I   + +I    G+ +  ++   G NIASE+  +++    I G++     L   + L+ P
Sbjct:   217 I---SDIIREKMGIDVSVLM---GANIASEVAAEKFCETTI-GSKIMENGLLFKELLQTP 269

Query:   268 HF--TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 310
             +F  TV D+ D V  E+ G LKN+ A+GAG    L +   T  +V
Sbjct:   270 NFRITVVDDADTV--ELCGALKNIVAVGAGFCDGLHSGDNTKAAV 312

GO:0051287 "NAD binding" evidence=IEA

GO:0046168 "glycerol-3-phosphate catabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0009331 "glycerol-3-phosphate dehydrogenase complex" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004367 "glycerol-3-phosphate dehydrogenase [NAD+

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22216	GPDHC_ARATH	1, ., 1, ., 1, ., 8	0.8429	0.9369	0.6753	yes	no
Q8S0G4	GPDH1_ORYSJ	1, ., 1, ., 1, ., 8	0.8493	0.9339	0.6820	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	LOW CONFIDENCE prediction!
4th Layer	1.1.1.94	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028665001 SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (465 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	333
COG0240	329	COG0240, GpsA, Glycerol-3-phosphate dehydrogenase	5e-19
PRK00094	325	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosp	3e-18
PRK12439	341	PRK12439, PRK12439, NAD(P)H-dependent glycerol-3-p	1e-13
PTZ00345	365	PTZ00345, PTZ00345, glycerol-3-phosphate dehydroge	7e-12
TIGR03376	342	TIGR03376, glycerol3P_DH, glycerol-3-phosphate deh	6e-11
pfam07479	145	pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-	7e-11
pfam01210	157	pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-	7e-09
PRK14618	328	PRK14618, PRK14618, NAD(P)H-dependent glycerol-3-p	3e-06
PRK14619	308	PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-p	8e-06

>gnl|CDD|223318 COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

 Score = 86.1 bits (214), Expect = 5e-19
 Identities = 62/265 (23%), Positives = 105/265 (39%), Gaps = 70/265 (26%)

Query: 43  PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINSRE 101
            ++I  +GAG+WG+    +L  + G+   +V  R+W R           E + E+  +RE
Sbjct: 1   MMKIAVIGAGSWGTALAKVLARN-GH---EV--RLWGRDE---------EIVAEINETRE 45

Query: 102 DVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDA 161
           +          YL  +              L               LK  T+L EA+  A
Sbjct: 46  NP--------KYLPGIL-------------LPPN------------LKATTDLAEALDGA 72

Query: 162 DIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRAT 221
           DI++  +PS   +EV  ++     +     +I+S  KG+E E          +++I    
Sbjct: 73  DIIVIAVPSQALREVLRQLKPLLLKD---AIIVSATKGLEPE-----TGRLLSEIIEEEL 124

Query: 222 GVPIENILYLGGPNIASEIYNKEYANARICGA------EKWRKPLAKFLRRPHFTVWDNG 275
             P   I  L GP+ A E+     A             ++  + +      P+F V+ + 
Sbjct: 125 --PDNPIAVLSGPSFAKEV-----AQGLPTAVVVASNDQEAAEKVQALFSSPYFRVYTST 177

Query: 276 DLVTHEVMGGLKNVYAIGAGMVAAL 300
           D++  E+ G LKNV AI AG+   L
Sbjct: 178 DVIGVEIGGALKNVIAIAAGIADGL 202

Length = 329

>gnl|CDD|234629 PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

 Score = 83.6 bits (208), Expect = 3e-18
 Identities = 58/264 (21%), Positives = 96/264 (36%), Gaps = 79/264 (29%)

Query: 49  VGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLI 108
           +GAG+WG+    +L  + G+    V   +W R          E   E+   RE+      
Sbjct: 7   LGAGSWGTALAIVLARN-GH---DV--TLWAR--------DPEQAAEINADRENP----- 47

Query: 109 RRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL 168
               YL                 L D             L+  T+L EA+ DAD+++  +
Sbjct: 48  ---RYLP-------------GIKLPDN------------LRATTDLAEALADADLILVAV 79

Query: 169 PSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228
           PS   +EV +++            I+   KG+E            ++++          I
Sbjct: 80  PSQALREVLKQLKPLLPPD---APIVWATKGIEPGTGK-----LLSEVLEEELPDL-API 130

Query: 229 LYLGGPNIASEI------------YNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276
             L GP+ A E+             ++E A             + +    P+F V+ N D
Sbjct: 131 AVLSGPSFAKEVARGLPTAVVIASTDEELAER-----------VQELFHSPYFRVYTNTD 179

Query: 277 LVTHEVMGGLKNVYAIGAGMVAAL 300
           ++  E+ G LKNV AI AG+   L
Sbjct: 180 VIGVELGGALKNVIAIAAGIADGL 203

Length = 325

>gnl|CDD|171500 PRK12439, PRK12439, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

 Score = 70.2 bits (172), Expect = 1e-13
 Identities = 52/158 (32%), Positives = 74/158 (46%), Gaps = 14/158 (8%)

Query: 142 DTPLCP-LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200
           D  L   L+  T+  EA   AD+V+ G+PS   + V  E+++    R  VPV+ SL KG+
Sbjct: 58  DVVLSDTLRATTDFAEAANCADVVVMGVPSHGFRGVLTELAKEL--RPWVPVV-SLVKGL 114

Query: 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWR--K 258
           E         +  +Q+I     +P      L GPNIA E+    YA A +          
Sbjct: 115 EQGTN-----MRMSQIIEEV--LPGHPAGILAGPNIAREVAEG-YAAAAVLAMPDQHLAT 166

Query: 259 PLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGM 296
            L+   R   F V+   D+V  E+ G LKNV+AI  GM
Sbjct: 167 RLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGM 204

Length = 341

>gnl|CDD|240373 PTZ00345, PTZ00345, glycerol-3-phosphate dehydrogenase; Provisional

 Score = 65.4 bits (160), Expect = 7e-12
 Identities = 69/279 (24%), Positives = 119/279 (42%), Gaps = 66/279 (23%)

Query: 43  PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV---LIRIWRRPGRSVDRATAEHLFEVINS 99
           PL++  +G+G WGS  + ++       R+ +    +R+W       +    E L ++IN+
Sbjct: 11  PLKVSVIGSGNWGSAISKVV--GENTQRNYIFHNEVRMWVLE----EIVEGEKLSDIINT 64

Query: 100 R-EDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV 158
           + E+V         YL  ++          D I+                  V++L+EAV
Sbjct: 65  KHENV--------KYLPGIKL--------PDNIV-----------------AVSDLKEAV 91

Query: 159 WDADIVINGLPSTETKEVFEEISRYWKERITVP---VIISLAKGVEAELEAVPRIITPTQ 215
            DAD++I  +P    + V  +I    KE   +      ISL KG+  E    P + +   
Sbjct: 92  EDADLLIFVIPHQFLESVLSQI----KENNNLKKHARAISLTKGIIVE-NGKPVLCSDV- 145

Query: 216 MINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEK-----WRKPLAKFLRRPHFT 270
            I    G+P      L G N+A+++  +E++ A I   +K     W++       RP+F 
Sbjct: 146 -IEEELGIPC---CALSGANVANDVAREEFSEATIGCEDKDDALIWQR----LFDRPYFK 197

Query: 271 VWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKS 309
           +    D++  EV G LKN+ A+ AG    L      +KS
Sbjct: 198 INCVPDVIGVEVCGALKNIIALAAGFCDGL-GLGTNTKS 235

Length = 365

>gnl|CDD|234190 TIGR03376, glycerol3P_DH, glycerol-3-phosphate dehydrogenase (NAD(+))

 Score = 62.4 bits (152), Expect = 6e-11
 Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 16/162 (9%)

Query: 146 CPLKVVTN--LQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203
            P  +V    L EA   ADI++  +P    + + +++  + K        IS  KG+E  
Sbjct: 66  LPANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNA---RAISCIKGLEVS 122

Query: 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-----CGAEKWRK 258
            + V      + +I    G+P      L G N+A+E+  ++++   +        +   +
Sbjct: 123 KDGV---KLLSDIIEEELGIPCG---VLSGANLANEVAKEKFSETTVGYRDPADFDVDAR 176

Query: 259 PLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAAL 300
            L     RP+F V    D+   E+ G LKNV AI AG V  L
Sbjct: 177 VLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGL 218

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. Length = 342

>gnl|CDD|116100 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus

 Score = 59.1 bits (144), Expect = 7e-11
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 276 DLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEM 319
           D+V  E+ G LKNV AI AG++  L      +K+        EM
Sbjct: 2   DVVGVEIGGALKNVIAIAAGILDGLGFG-DNTKAALITRGLMEM 44

NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the C-terminal substrate-binding domain. Length = 145

>gnl|CDD|201664 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus

 Score = 53.8 bits (130), Expect = 7e-09
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 146 CPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELE 205
             L+  T+L+EA+  ADI++  +PS   +EV +++           +++SL KG+E    
Sbjct: 55  DNLRATTDLEEAIKGADIIVLAVPSQALREVLKQLKGLLSPG---AILVSLTKGIEPGTL 111

Query: 206 AVPRIITPTQMINRATGVPIENILYLGGPNIASEI 240
            +   I   ++       PI  I  L GP+ A E+
Sbjct: 112 KLLSEIIEEEL-------PINPIAVLSGPSHAEEV 139

NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain. Length = 157

>gnl|CDD|237770 PRK14618, PRK14618, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 14/154 (9%)

Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAV 207
           L    + +EA+  AD  +  +PS   +E    + R           +S AKG+  +    
Sbjct: 62  LYPTADPEEALAGADFAVVAVPSKALRETLAGLPR-------ALGYVSCAKGLAPDGG-- 112

Query: 208 PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEK-WRKPLAKFLRR 266
            R+    +++   T   +     L GPN A EI     A   +   E    + +      
Sbjct: 113 -RLSELARVLEFLTQARV---AVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAFSG 168

Query: 267 PHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAAL 300
           P F V+ + D V  E+ G LKNV A+ AGMV  L
Sbjct: 169 PSFRVYTSRDRVGVELGGALKNVIALAAGMVDGL 202

Length = 328

>gnl|CDD|237771 PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 16/148 (10%)

Query: 152 TNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVP---VIISLAKGVEAELEAVP 208
            +L   + DAD++++ +     + V E++     + + +P   +I++  KG++ E     
Sbjct: 39  LSLAAVLADADVIVSAVSMKGVRPVAEQV-----QALNLPPETIIVTATKGLDPE----- 88

Query: 209 RIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWR-KPLAKFLRRP 267
              TP+Q+   A   P   ++ L GPN++ EI     A   +   +    + + +     
Sbjct: 89  TTRTPSQIWQAA--FPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSE 146

Query: 268 HFTVWDNGDLVTHEVMGGLKNVYAIGAG 295
            F V+ N D +  E+ G LKNV AI AG
Sbjct: 147 RFRVYTNSDPLGTELGGTLKNVIAIAAG 174

Length = 308

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	333
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	100.0
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	100.0
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	100.0
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	100.0
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	100.0
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	100.0
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.98
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.97
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	99.97
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	99.95
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	99.86
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	99.82
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	99.79
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	99.78
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	99.76
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	99.74
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	99.72
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.69
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	99.69
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	99.66
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	99.66
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	99.63
PRK07680	273	late competence protein ComER; Validated	99.61
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	99.59
PTZ00431	260	pyrroline carboxylate reductase; Provisional	99.58
PLN02688	266	pyrroline-5-carboxylate reductase	99.55
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	99.52
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	99.5
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	99.45
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	99.42
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.42
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.42
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.41
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.4
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	99.4
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	99.38
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.38
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.37
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.36
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.36
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.36
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.36
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.35
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.35
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.35
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.34
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	99.34
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.33
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	99.33
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.33
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.32
PF07479	149	NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate	99.32
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.32
PLN02353	473	probable UDP-glucose 6-dehydrogenase	99.31
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	99.3
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.3
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.29
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	99.26
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	99.26
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	99.24
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	99.24
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.24
PRK08655	437	prephenate dehydrogenase; Provisional	99.22
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.22
PRK07417	279	arogenate dehydrogenase; Reviewed	99.22
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	99.21
PRK08507	275	prephenate dehydrogenase; Validated	99.2
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.18
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.17
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.15
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.14
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	99.14
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.09
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.09
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.08
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	99.07
PLN02858	1378	fructose-bisphosphate aldolase	99.06
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.06
PLN02256	304	arogenate dehydrogenase	99.03
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.01
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.0
PRK06545	359	prephenate dehydrogenase; Validated	98.99
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.98
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.98
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.92
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.91
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.88
KOG0409	327	consensus Predicted dehydrogenase [General functio	98.87
PLN02858	1378	fructose-bisphosphate aldolase	98.83
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	98.81
PRK13403	335	ketol-acid reductoisomerase; Provisional	98.68
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	98.67
PLN02712	667	arogenate dehydrogenase	98.67
PLN02712	667	arogenate dehydrogenase	98.65
PRK08818	370	prephenate dehydrogenase; Provisional	98.65
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.59
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.55
PRK12480	330	D-lactate dehydrogenase; Provisional	98.54
PRK06223	307	malate dehydrogenase; Reviewed	98.49
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	98.49
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.46
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.41
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	98.37
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	98.35
PRK08605	332	D-lactate dehydrogenase; Validated	98.32
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.32
PTZ00082	321	L-lactate dehydrogenase; Provisional	98.28
PTZ00117	319	malate dehydrogenase; Provisional	98.18
PRK05225	487	ketol-acid reductoisomerase; Validated	98.14
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.12
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	98.1
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.06
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	98.06
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.06
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	98.05
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.04
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	98.01
PRK15076	431	alpha-galactosidase; Provisional	97.99
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	97.98
PLN02602	350	lactate dehydrogenase	97.96
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	97.95
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	97.91
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	97.87
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	97.83
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	97.83
PRK13243	333	glyoxylate reductase; Reviewed	97.83
PRK07574	385	formate dehydrogenase; Provisional	97.82
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.8
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.78
PLN03139	386	formate dehydrogenase; Provisional	97.76
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.74
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	97.73
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.72
PRK06444	197	prephenate dehydrogenase; Provisional	97.72
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.69
PRK06436	303	glycerate dehydrogenase; Provisional	97.65
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	97.64
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	97.62
PRK06141	314	ornithine cyclodeaminase; Validated	97.62
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.61
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.61
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	97.59
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	97.58
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	97.55
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.54
PRK00048	257	dihydrodipicolinate reductase; Provisional	97.52
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.5
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	97.49
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	97.49
TIGR00036	266	dapB dihydrodipicolinate reductase.	97.48
PRK05442	326	malate dehydrogenase; Provisional	97.44
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	97.43
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	97.42
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	97.41
PRK09496	453	trkA potassium transporter peripheral membrane com	97.41
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.4
PRK08618	325	ornithine cyclodeaminase; Validated	97.39
PRK08291	330	ectoine utilization protein EutC; Validated	97.38
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	97.38
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	97.37
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.35
PRK13303	265	L-aspartate dehydrogenase; Provisional	97.33
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.33
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	97.32
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	97.32
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.3
COG2344	211	AT-rich DNA-binding protein [General function pred	97.28
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.27
PLN02928	347	oxidoreductase family protein	97.27
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.27
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	97.25
PF10100	429	DUF2338: Uncharacterized protein conserved in bact	97.22
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.15
PRK09496	453	trkA potassium transporter peripheral membrane com	97.15
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	97.14
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.14
PRK05086	312	malate dehydrogenase; Provisional	97.13
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	97.13
PLN00106	323	malate dehydrogenase	97.12
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.12
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	97.11
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.11
PLN00203	519	glutamyl-tRNA reductase	97.1
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	97.1
PLN02306	386	hydroxypyruvate reductase	97.09
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	97.08
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	97.08
PRK07589	346	ornithine cyclodeaminase; Validated	97.07
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.07
PRK06487	317	glycerate dehydrogenase; Provisional	97.07
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.07
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	97.06
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	97.06
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.05
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	97.03
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	97.0
PRK06932	314	glycerate dehydrogenase; Provisional	97.0
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	96.99
PRK06407	301	ornithine cyclodeaminase; Provisional	96.97
PRK07340	304	ornithine cyclodeaminase; Validated	96.97
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	96.96
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	96.91
PRK06823	315	ornithine cyclodeaminase; Validated	96.91
PTZ00325	321	malate dehydrogenase; Provisional	96.9
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	96.88
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	96.86
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	96.84
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	96.84
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	96.84
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	96.84
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	96.84
PLN00112	444	malate dehydrogenase (NADP); Provisional	96.83
PRK06046	326	alanine dehydrogenase; Validated	96.8
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.76
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.75
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.75
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.74
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.73
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.72
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.69
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	96.66
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.62
PRK11579	346	putative oxidoreductase; Provisional	96.62
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.59
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	96.56
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.55
COG0673	342	MviM Predicted dehydrogenases and related proteins	96.53
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.5
PRK06199	379	ornithine cyclodeaminase; Validated	96.49
PLN02494	477	adenosylhomocysteinase	96.47
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.47
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.46
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.45
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.45
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.45
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.44
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	96.44
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	96.43
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.42
PRK10669	558	putative cation:proton antiport protein; Provision	96.42
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.41
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.41
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.41
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	96.4
PTZ00075	476	Adenosylhomocysteinase; Provisional	96.37
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.36
PRK04148	134	hypothetical protein; Provisional	96.29
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.27
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.21
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	96.2
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.19
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.14
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.13
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.1
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.09
COG2910	211	Putative NADH-flavin reductase [General function p	96.06
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.05
PRK08300	302	acetaldehyde dehydrogenase; Validated	96.04
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.97
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	95.88
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	95.86
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.83
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	95.8
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.79
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.68
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.67
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	95.58
CHL00194	317	ycf39 Ycf39; Provisional	95.57
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.51
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	95.51
PRK08328	231	hypothetical protein; Provisional	95.5
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	95.46
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	95.42
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	95.41
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	95.41
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.38
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	95.25
PRK12548	289	shikimate 5-dehydrogenase; Provisional	95.25
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.19
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	95.12
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.11
PRK06153	393	hypothetical protein; Provisional	95.07
PRK06753	373	hypothetical protein; Provisional	95.04
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	94.98
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	94.96
PLN02383	344	aspartate semialdehyde dehydrogenase	94.95
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	94.94
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	94.86
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	94.84
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.78
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	94.76
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	94.76
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	94.72
PRK10206	344	putative oxidoreductase; Provisional	94.7
PRK06349	426	homoserine dehydrogenase; Provisional	94.69
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	94.67
PRK05868	372	hypothetical protein; Validated	94.64
PRK06847	375	hypothetical protein; Provisional	94.56
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.5
COG4408	431	Uncharacterized protein conserved in bacteria [Fun	94.49
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	94.48
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	94.48
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	94.42
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	94.37
PRK08163	396	salicylate hydroxylase; Provisional	94.36
PRK06270	341	homoserine dehydrogenase; Provisional	94.33
PRK07588	391	hypothetical protein; Provisional	94.23
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	94.19
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	94.14
PRK07538	413	hypothetical protein; Provisional	94.07
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	94.01
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	93.96
PRK07236	386	hypothetical protein; Provisional	93.95
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	93.92
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	93.89
PRK10537	393	voltage-gated potassium channel; Provisional	93.78
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	93.73
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	93.66
KOG1495	332	consensus Lactate dehydrogenase [Energy production	93.63
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	93.63
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	93.61
PRK14982	340	acyl-ACP reductase; Provisional	93.53
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	93.51
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	93.5
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	93.47
PRK06392	326	homoserine dehydrogenase; Provisional	93.46
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.36
COG0300	265	DltE Short-chain dehydrogenases of various substra	93.32
PRK07411	390	hypothetical protein; Validated	93.3
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	93.23
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	93.22
PRK06475	400	salicylate hydroxylase; Provisional	93.18
PRK06185	407	hypothetical protein; Provisional	93.15
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	93.13
PRK08223	287	hypothetical protein; Validated	93.03
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	93.02
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	92.93
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	92.92
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	92.91
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.89
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	92.87
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	92.87
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.82
PRK07045	388	putative monooxygenase; Reviewed	92.76
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	92.72
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	92.72
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	92.7
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	92.69
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	92.68
PRK08013	400	oxidoreductase; Provisional	92.67
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	92.67
PRK00961	342	H(2)-dependent methylenetetrahydromethanopterin de	92.59
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	92.58
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	92.46
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.43
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	92.41
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	92.37
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	92.31
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	92.29
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	92.29
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	92.18
PRK15116	268	sulfur acceptor protein CsdL; Provisional	92.12
PLN02464	627	glycerol-3-phosphate dehydrogenase	92.03
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	92.0
PF08484	160	Methyltransf_14: C-methyltransferase C-terminal do	91.94
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	91.88
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	91.87
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	91.79
PLN02985	514	squalene monooxygenase	91.79
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.79
PRK06126	545	hypothetical protein; Provisional	91.78
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	91.76
PRK08132	547	FAD-dependent oxidoreductase; Provisional	91.75
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	91.75
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	91.74
PTZ00367	567	squalene epoxidase; Provisional	91.7
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	91.62
TIGR01723	340	hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr	91.61
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	91.61
PRK12770	352	putative glutamate synthase subunit beta; Provisio	91.59
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	91.54
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	91.5
PRK12814	652	putative NADPH-dependent glutamate synthase small	91.49
PRK12779	944	putative bifunctional glutamate synthase subunit b	91.48
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	91.43
PRK07877	722	hypothetical protein; Provisional	91.42
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	91.37
PRK09126	392	hypothetical protein; Provisional	91.36
PRK00536	262	speE spermidine synthase; Provisional	91.36
PRK08374	336	homoserine dehydrogenase; Provisional	91.33
PLN02852	491	ferredoxin-NADP+ reductase	91.32
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	91.32
PRK10538	248	malonic semialdehyde reductase; Provisional	91.3
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	91.17
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	91.03
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.0
PRK05884	223	short chain dehydrogenase; Provisional	90.9
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	90.9
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	90.87
PLN00016	378	RNA-binding protein; Provisional	90.84
PRK08340	259	glucose-1-dehydrogenase; Provisional	90.81
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	90.77
PRK07454	241	short chain dehydrogenase; Provisional	90.74
PRK08267	260	short chain dehydrogenase; Provisional	90.73
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	90.72
PRK07102	243	short chain dehydrogenase; Provisional	90.66
COG3349	485	Uncharacterized conserved protein [Function unknow	90.66
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	90.65
PRK07023	243	short chain dehydrogenase; Provisional	90.59
PRK08244	493	hypothetical protein; Provisional	90.59
PRK08177	225	short chain dehydrogenase; Provisional	90.55
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	90.52
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	90.47
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	90.45
PRK06184	502	hypothetical protein; Provisional	90.43
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	90.37
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	90.37
PTZ00188	506	adrenodoxin reductase; Provisional	90.33
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.26
PRK08017	256	oxidoreductase; Provisional	90.23
PRK11728	393	hydroxyglutarate oxidase; Provisional	90.22
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	90.17
PTZ00383	497	malate:quinone oxidoreductase; Provisional	90.14
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	90.0
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	89.95
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	89.92
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	89.89
TIGR02130	275	dapB_plant dihydrodipicolinate reductase. This nar	89.88
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	89.8
PRK11445	351	putative oxidoreductase; Provisional	89.78
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	89.75
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	89.71
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	89.68
PLN02695	370	GDP-D-mannose-3',5'-epimerase	89.67
PRK08294	634	phenol 2-monooxygenase; Provisional	89.64
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	89.64
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.63
PLN03075	296	nicotianamine synthase; Provisional	89.58
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	89.58
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	89.5
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	89.48
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	89.48
PRK12831	464	putative oxidoreductase; Provisional	89.31
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	89.25
PRK07326	237	short chain dehydrogenase; Provisional	89.19
PRK13512	438	coenzyme A disulfide reductase; Provisional	89.01
PRK06101	240	short chain dehydrogenase; Provisional	89.0
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	88.97
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	88.94
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	88.91
PRK05562	223	precorrin-2 dehydrogenase; Provisional	88.8
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	88.79
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	88.78
PRK07233	434	hypothetical protein; Provisional	88.76
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.67
PRK07190	487	hypothetical protein; Provisional	88.67
PRK13977	576	myosin-cross-reactive antigen; Provisional	88.62
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	88.62
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	88.6
PRK05257	494	malate:quinone oxidoreductase; Validated	88.58
PRK06194	287	hypothetical protein; Provisional	88.54
PRK06834	488	hypothetical protein; Provisional	88.53
PRK10157	428	putative oxidoreductase FixC; Provisional	88.5
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	88.49
PRK07208	479	hypothetical protein; Provisional	88.48
PRK07024	257	short chain dehydrogenase; Provisional	88.46
PRK10675	338	UDP-galactose-4-epimerase; Provisional	88.4
PRK05993	277	short chain dehydrogenase; Provisional	88.39
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	88.38
PRK12939	250	short chain dehydrogenase; Provisional	88.34
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	88.26
PRK07523	255	gluconate 5-dehydrogenase; Provisional	88.21
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.2
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	88.2
COG5495	289	Uncharacterized conserved protein [Function unknow	88.19
PRK06567	1028	putative bifunctional glutamate synthase subunit b	88.16
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	88.1
PLN02214	342	cinnamoyl-CoA reductase	88.09
PRK07109	334	short chain dehydrogenase; Provisional	88.08
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	88.08
PRK07774	250	short chain dehydrogenase; Provisional	88.03
PLN02778	298	3,5-epimerase/4-reductase	88.01
PRK06057	255	short chain dehydrogenase; Provisional	88.0
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	87.94
PRK07060	245	short chain dehydrogenase; Provisional	87.91
PRK12829	264	short chain dehydrogenase; Provisional	87.9
PRK06124	256	gluconate 5-dehydrogenase; Provisional	87.87
PRK07845	466	flavoprotein disulfide reductase; Reviewed	87.83
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	87.82
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	87.81
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	87.71
PRK08703	239	short chain dehydrogenase; Provisional	87.67
PRK07890	258	short chain dehydrogenase; Provisional	87.64
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	87.58
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	87.57
PLN02896	353	cinnamyl-alcohol dehydrogenase	87.49
PLN02487	569	zeta-carotene desaturase	87.48
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	87.44
PRK06949	258	short chain dehydrogenase; Provisional	87.39
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	87.38

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=4.4e-49  Score=375.24  Aligned_cols=229  Identities=26%  Similarity=0.422  Sum_probs=208.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +|||+|+|+|+||++||..|+++ |     |+|++|.|+++.+++|+.+|                +|++|+|++     
T Consensus         1 ~~kI~ViGaGswGTALA~~la~n-g-----~~V~lw~r~~~~~~~i~~~~----------------~N~~yLp~i-----   53 (329)
T COG0240           1 MMKIAVIGAGSWGTALAKVLARN-G-----HEVRLWGRDEEIVAEINETR----------------ENPKYLPGI-----   53 (329)
T ss_pred             CceEEEEcCChHHHHHHHHHHhc-C-----CeeEEEecCHHHHHHHHhcC----------------cCccccCCc-----
Confidence            48999999999999999999999 8     99999999999877654322                488899875     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                        .+|+                  ++.+++|++++++++|+|+++||+++++++++++++++.+   ++.+|+++||+++
T Consensus        54 --~lp~------------------~l~at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~---~~~iv~~sKGie~  110 (329)
T COG0240          54 --LLPP------------------NLKATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLK---DAIIVSATKGLEP  110 (329)
T ss_pred             --cCCc------------------ccccccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccC---CCeEEEEeccccC
Confidence              3442                  6899999999999999999999999999999999988877   7899999999999


Q ss_pred             cccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCChhHHH
Q 019978          203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE  281 (333)
Q Consensus       203 ~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di~gve  281 (333)
                      +     +.+++|+++++.+|.  .++++++||+||.|++++.|+.+++ +.+.+.++.++.+|++.+|++|.++|++|+|
T Consensus       111 ~-----t~~l~seii~e~l~~--~~~~vLSGPs~A~EVa~g~pta~~vas~d~~~a~~v~~~f~~~~Frvy~~~Dv~Gve  183 (329)
T COG0240         111 E-----TGRLLSEIIEEELPD--NPIAVLSGPSFAKEVAQGLPTAVVVASNDQEAAEKVQALFSSPYFRVYTSTDVIGVE  183 (329)
T ss_pred             C-----CcchHHHHHHHHcCC--CeEEEEECccHHHHHhcCCCcEEEEecCCHHHHHHHHHHhCCCcEEEEecCchhhhH
Confidence            7     579999999999974  3489999999999999999998766 5677899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCC
Q 019978          282 VMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSW  329 (333)
Q Consensus       282 ~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~  329 (333)
                      ++||||||+||+|||++|+++ |+|++++|++|+++||..+ .+||++.
T Consensus       184 igGAlKNViAIA~Gi~dGlg~-G~NakaalitrGL~Em~rlg~~lG~~~  231 (329)
T COG0240         184 IGGALKNVIAIAAGIADGLGL-GDNAKAALITRGLAEMTRLGVALGAKP  231 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHhHHHHHHHHHHHhCCCc
Confidence            999999999999999999999 7999999999999999999 9999984

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=5.1e-46  Score=363.12  Aligned_cols=248  Identities=27%  Similarity=0.399  Sum_probs=211.1

Q ss_pred             HHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCC--CCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhc
Q 019978           33 RRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYL--RDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRR  110 (333)
Q Consensus        33 ~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~--~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~  110 (333)
                      |.|+++..++.|||+|||+|+||+++|..|+++ |.-  ..+|+|.+|.|+++.-    .+++.+.|++.+       +|
T Consensus         1 ~~~~~~~~~~~~ki~ViGaG~wGtAlA~~l~~n-~~~~~~~~~~V~lw~~~~~~~----~~~~~~~in~~~-------~N   68 (365)
T PTZ00345          1 RSLFQKLRCGPLKVSVIGSGNWGSAISKVVGEN-TQRNYIFHNEVRMWVLEEIVE----GEKLSDIINTKH-------EN   68 (365)
T ss_pred             CcchhhcccCCCeEEEECCCHHHHHHHHHHHhc-CCcccCCCCeEEEEEeccccc----chHHHHHHHhcC-------CC
Confidence            346788889999999999999999999999998 510  0016999999998631    112233344443       58


Q ss_pred             ccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHh--hhhccC
Q 019978          111 CAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR--YWKERI  188 (333)
Q Consensus       111 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~--~l~~~~  188 (333)
                      ++|+|++       +||                  .++.+++|++++++++|+||++||++.++++++++++  ++++  
T Consensus        69 ~~ylp~~-------~Lp------------------~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~--  121 (365)
T PTZ00345         69 VKYLPGI-------KLP------------------DNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKK--  121 (365)
T ss_pred             cccCCCC-------cCC------------------CceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCC--
Confidence            8888875       354                  2788999999999999999999999999999999998  7765  


Q ss_pred             CCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCC
Q 019978          189 TVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRP  267 (333)
Q Consensus       189 ~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~  267 (333)
                       ++++||++||++.++   ++..++++++++.++.   ++++++||+||.|++++.|+.+++ +.+.+.++.++++|+++
T Consensus       122 -~~~iIS~aKGIe~~t---~~~~~~sevi~e~l~~---~~~~LsGPs~A~Eva~~~pt~~vias~~~~~a~~~~~lf~~~  194 (365)
T PTZ00345        122 -HARAISLTKGIIVEN---GKPVLCSDVIEEELGI---PCCALSGANVANDVAREEFSEATIGCEDKDDALIWQRLFDRP  194 (365)
T ss_pred             -CCEEEEEeCCcccCC---CCcccHHHHHHHHhCC---CeEEEECCCHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCC
Confidence             678999999999863   1247899999999963   588999999999999999988765 66778999999999999


Q ss_pred             CeEEEecCChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCC
Q 019978          268 HFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGR  327 (333)
Q Consensus       268 ~~~v~~s~Di~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~  327 (333)
                      +|+++.++|++|+|+||+|||||||++||++|+++ |+|++++|++++++||..+ +++|+
T Consensus       195 ~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~-G~N~kaalitrgl~Em~~l~~a~g~  254 (365)
T PTZ00345        195 YFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGL-GTNTKSAIIRIGLEEMKLFGKIFFP  254 (365)
T ss_pred             cEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999 7999999999999999999 99975

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=100.00  E-value=5.4e-44  Score=346.48  Aligned_cols=239  Identities=24%  Similarity=0.347  Sum_probs=203.0

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCC---CeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRD---KVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~---~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ||+|||+|+||+++|..|+++ |...+   .|+|++|.|+++.-    .+.+.+.|++.+       .|++|+|++    
T Consensus         1 kI~VIGaG~wGtALA~~la~n-g~~~~~~~~~~V~lw~~~~~~~----~~~~~~~in~~~-------~n~~ylpgi----   64 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAEN-ARALPELFEESVRMWVFEEEIE----GRNLTEIINTTH-------ENVKYLPGI----   64 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHc-CCcccccCCceEEEEEeccccC----CHHHHHHHHhcC-------CCccccCCC----
Confidence            699999999999999999998 51100   17999999965210    112334455443       477888764    


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                         ++|                  .++++++|++++++++|+||++||+++++++++++++++++   ++++|+++||++
T Consensus        65 ---~Lp------------------~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~---~~~iVs~tKGie  120 (342)
T TIGR03376        65 ---KLP------------------ANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKP---NARAISCIKGLE  120 (342)
T ss_pred             ---cCC------------------CCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCC---CCEEEEEeCCcc
Confidence               343                  26889999999999999999999999999999999999976   789999999998


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCC----hhhHHHHHHHhCCCCeEEEecCC
Q 019978          202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGA----EKWRKPLAKFLRRPHFTVWDNGD  276 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~----~~~~~~l~~ll~~~~~~v~~s~D  276 (333)
                      .+.   ++..++++++++.++   .++++++||++|.|++++.|+.+++ +.+    .+.++.++++|++++|+++.++|
T Consensus       121 ~~~---~~~~~~se~i~e~l~---~~~~~lsGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~D  194 (342)
T TIGR03376       121 VSK---DGVKLLSDIIEEELG---IPCGVLSGANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDD  194 (342)
T ss_pred             cCC---CcCccHHHHHHHHhC---CCeEEeeCcchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCC
Confidence            762   357899999999995   3588999999999999999988765 556    68899999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCCC
Q 019978          277 LVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSWQ  330 (333)
Q Consensus       277 i~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~~  330 (333)
                      ++|+|+||+|||||||++||++|+++ |+|++++|++++++||..+ +++|++.+
T Consensus       195 v~GvEl~galKNv~AIa~Gi~~Gl~~-g~N~~aalitrgl~Em~~l~~~~g~~~~  248 (342)
T TIGR03376       195 VAGVEIAGALKNVVAIAAGFVDGLGW-GDNAKAAVMRRGLLEMIKFARMFFPTGE  248 (342)
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999 7999999999999999999 99999764

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=100.00  E-value=1.9e-40  Score=313.51  Aligned_cols=261  Identities=35%  Similarity=0.446  Sum_probs=225.6

Q ss_pred             hHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCC-CCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhH
Q 019978           25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYL-RDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV  103 (333)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~-~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~  103 (333)
                      .++++++.++..+..+..+.||+|||+|+||+++|+.++.+++.+ ....+|++|.+.++.-.+  .++|.++||++|+ 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~--~~~L~eiIN~~he-   79 (372)
T KOG2711|consen    3 DEIKLDESIRNLGKAERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE--AEKLTEIINSRHE-   79 (372)
T ss_pred             cccccchhhhccCchhcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh--hHHHHHHhccccc-
Confidence            467889999999999999999999999999999999999885322 111479999998865443  4789999999984 


Q ss_pred             HHHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhh
Q 019978          104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY  183 (333)
Q Consensus       104 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~  183 (333)
                            |++|+|+.       ++|+                  ++.+++|+.+++++||++|+++|.|++..++++|+.+
T Consensus        80 ------N~KYlpg~-------~lP~------------------NvvAv~dl~ea~~dADilvf~vPhQf~~~ic~~l~g~  128 (372)
T KOG2711|consen   80 ------NVKYLPGI-------KLPE------------------NVVAVPDLVEAAKDADILVFVVPHQFIPRICEQLKGY  128 (372)
T ss_pred             ------cccccCCc-------cCCC------------------CeEecchHHHHhccCCEEEEeCChhhHHHHHHHHhcc
Confidence                  89999875       4542                  6889999999999999999999999999999999999


Q ss_pred             hhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChh--hHHHHH
Q 019978          184 WKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEK--WRKPLA  261 (333)
Q Consensus       184 l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~--~~~~l~  261 (333)
                      +++   +...||++||++.... .++..++|++|.+.+|.+   +.++.|||+|.|++++.++.++++..++  .-..++
T Consensus       129 vk~---~~~aISL~KG~e~~~~-g~~i~liS~iI~~~lgI~---~~vL~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~  201 (372)
T KOG2711|consen  129 VKP---GATAISLIKGVEVGEE-GPGIRLISQIIHRALGIP---CSVLMGANIASEVANEKFCETTIGYKDKKEAGILLK  201 (372)
T ss_pred             cCC---CCeEEEeecceeccCC-CCceeehHHHHHHHhCCC---ceeecCCchHHHHHhccccceeEeccchhhcchHHH
Confidence            998   7888999999997531 124789999999999864   6799999999999999999888765433  233599


Q ss_pred             HHhCCCCeEEEecCChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH--HHCCC
Q 019978          262 KFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM--HGMGR  327 (333)
Q Consensus       262 ~ll~~~~~~v~~s~Di~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l--~~~G~  327 (333)
                      ++|++++|+++..+|..++|+||+||||+|+++|+++||++ ++|.+++++.+++.||..+  .=+.+
T Consensus       202 ~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~-g~NTkaAi~r~Gl~Em~~F~~~f~p~  268 (372)
T KOG2711|consen  202 KLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGL-GNNTKAAIIRLGLLEMIKFATHFYPG  268 (372)
T ss_pred             HHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccC-CcchHHHHHHhhHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999 7999999999999999998  35555

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=2.1e-38  Score=307.67  Aligned_cols=232  Identities=28%  Similarity=0.432  Sum_probs=197.9

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ..+|||+|||+|+||+++|..|+++ |      +|++|.|+++++++++.++                .|..+++.    
T Consensus         5 ~~~mkI~IiGaGa~G~alA~~La~~-g------~v~l~~~~~~~~~~i~~~~----------------~~~~~l~~----   57 (341)
T PRK12439          5 KREPKVVVLGGGSWGTTVASICARR-G------PTLQWVRSAETADDINDNH----------------RNSRYLGN----   57 (341)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHC-C------CEEEEeCCHHHHHHHHhcC----------------CCcccCCC----
Confidence            3468999999999999999999998 5      5889999988776554322                13334431    


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                        +.+++                  .++.+++|++++++++|+||++||+++++++++++++++++   ++++|+++||+
T Consensus        58 --~~~l~------------------~~i~~t~d~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~---~~~vIsl~kGi  114 (341)
T PRK12439         58 --DVVLS------------------DTLRATTDFAEAANCADVVVMGVPSHGFRGVLTELAKELRP---WVPVVSLVKGL  114 (341)
T ss_pred             --CcccC------------------CCeEEECCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEEEeCC
Confidence              01121                  25778899988899999999999999999999999999986   67899999999


Q ss_pred             cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCChhH
Q 019978          201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVT  279 (333)
Q Consensus       201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di~g  279 (333)
                      +.+     +.+++++++++.++.  .++.+++||+++.++.++.++.+++ +.+++.++.++++|++++|+++.++|++|
T Consensus       115 ~~~-----t~~~~se~i~~~l~~--~~~~~l~GP~~a~ev~~g~~t~~via~~~~~~~~~v~~lf~~~~~~v~~s~Di~g  187 (341)
T PRK12439        115 EQG-----TNMRMSQIIEEVLPG--HPAGILAGPNIAREVAEGYAAAAVLAMPDQHLATRLSPLFRTRRFRVYTTDDVVG  187 (341)
T ss_pred             cCC-----CCCcHHHHHHHHcCC--CCeEEEECCCHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCCEEEEEcCchHH
Confidence            986     568999999998863  4577899999999999999887655 55667899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCCC
Q 019978          280 HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSWQ  330 (333)
Q Consensus       280 ve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~~  330 (333)
                      +||||++||++||++|+++|+++ ++|+++++++++++||..+ +++|++..
T Consensus       188 ve~~~alkNv~aia~G~~~g~~~-g~n~~aali~~~~~E~~~~~~a~G~~~~  238 (341)
T PRK12439        188 VEMAGALKNVFAIAVGMGYSLGI-GENTRAMVIARALREMTKLGVAMGGNPE  238 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            99999999999999999999998 6899999999999999999 99999765

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=8.9e-34  Score=272.97  Aligned_cols=230  Identities=19%  Similarity=0.331  Sum_probs=192.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|+||+++|..|+++ |     ++|++|+|++++++.++.++                ++..++++.      
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~-g-----~~V~l~~r~~~~~~~i~~~~----------------~~~~~~~~~------   52 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSK-K-----ISVNLWGRNHTTFESINTKR----------------KNLKYLPTC------   52 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHC-C-----CeEEEEecCHHHHHHHHHcC----------------CCcccCCCC------
Confidence            6899999999999999999999 8     99999999987766543211                133334321      


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCchhHHHHHHHHHh-hhhccCCCCEEEEeeecCc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKGVE  201 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~-~~aDlIIlaVps~~~~~vl~~i~~-~l~~~~~~~~Ivs~~kGi~  201 (333)
                       .++                  .++.+++++++++ +++|+||++||+++++++++++++ ++++   ++.+++++||+.
T Consensus        53 -~~~------------------~~i~~~~~~~~~~~~~~Dliiiavks~~~~~~l~~l~~~~l~~---~~~vv~~~nGi~  110 (326)
T PRK14620         53 -HLP------------------DNISVKSAIDEVLSDNATCIILAVPTQQLRTICQQLQDCHLKK---NTPILICSKGIE  110 (326)
T ss_pred             -cCC------------------CCeEEeCCHHHHHhCCCCEEEEEeCHHHHHHHHHHHHHhcCCC---CCEEEEEEcCee
Confidence             121                  2577888888776 589999999999999999999998 8776   678899999998


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCChhHH
Q 019978          202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH  280 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di~gv  280 (333)
                      ..     +..++++.+.+.++.  .++.+++||+++.+++.+.++.+.. +.+.+..+.++++|++.+|+++.++|++|+
T Consensus       111 ~~-----~~~~~~~~l~~~~~~--~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Di~g~  183 (326)
T PRK14620        111 KS-----SLKFPSEIVNEILPN--NPIAILSGPSFAKEIAEKLPCSIVLAGQNETLGSSLISKLSNENLKIIYSQDIIGV  183 (326)
T ss_pred             CC-----CCccHHHHHHHHcCC--CceEeecCCcHHHHHHcCCCcEEEEecCCHHHHHHHHHHHCCCCeEEEecCcchhh
Confidence            76     457788999988863  4677889999999999887765554 445567899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCCCC
Q 019978          281 EVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSWQK  331 (333)
Q Consensus       281 e~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~~~  331 (333)
                      +|++++||++++++|+..|+.+ +.|.++++++++++||..+ +++|+.+++
T Consensus       184 ~~~k~~~N~ia~~~g~~~g~~~-~~n~~~~l~~~~~~E~~~v~~a~G~~~~~  234 (326)
T PRK14620        184 QIGAALKNIIAIACGIVLGKNL-GNNAHAAVITKGMNEIKTLYSAKNGSIDL  234 (326)
T ss_pred             hhHHHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            9999999999999999999998 5678999999999999999 999986543

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.98  E-value=7.9e-31  Score=252.82  Aligned_cols=229  Identities=27%  Similarity=0.389  Sum_probs=184.5

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      +++|||+|||+|+||+++|..|+++ |     |+|++|+|++++++.++..+                .++.++++.   
T Consensus         2 ~~~m~I~iIG~G~mG~~ia~~L~~~-G-----~~V~~~~r~~~~~~~i~~~~----------------~~~~~~~g~---   56 (328)
T PRK14618          2 HHGMRVAVLGAGAWGTALAVLAASK-G-----VPVRLWARRPEFAAALAAER----------------ENREYLPGV---   56 (328)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHHhC----------------cccccCCCC---
Confidence            4679999999999999999999999 8     99999999987665433211                122333221   


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                          .++                  .++..+++++++++++|+||+++|+++++++++.++    +   +.+++++++|+
T Consensus        57 ----~~~------------------~~~~~~~~~~e~~~~aD~Vi~~v~~~~~~~v~~~l~----~---~~~vi~~~~Gi  107 (328)
T PRK14618         57 ----ALP------------------AELYPTADPEEALAGADFAVVAVPSKALRETLAGLP----R---ALGYVSCAKGL  107 (328)
T ss_pred             ----cCC------------------CCeEEeCCHHHHHcCCCEEEEECchHHHHHHHHhcC----c---CCEEEEEeecc
Confidence                111                  136677888888899999999999999888886553    3   57899999999


Q ss_pred             cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCChhH
Q 019978          201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVT  279 (333)
Q Consensus       201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di~g  279 (333)
                      .+..   .....+++++.+...   ..+.++.||+++.++..+.++..+. +++++..+.++++|+..+++++.++|++|
T Consensus       108 ~~~~---~~~~~l~~~l~~~~~---~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~~~~v~~~~di~g  181 (328)
T PRK14618        108 APDG---GRLSELARVLEFLTQ---ARVAVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAFSGPSFRVYTSRDRVG  181 (328)
T ss_pred             ccCC---CccchHHHHHHHhcC---CCeEEEECccHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCccc
Confidence            8752   124456666654221   2356889999999999988766544 66778899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCCC
Q 019978          280 HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSWQ  330 (333)
Q Consensus       280 ve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~~  330 (333)
                      ++|++++||++|+++|++.++++ ++|.+++++.++++|+..+ +++|++++
T Consensus       182 ~~~~~~lkN~~ai~~G~~~~~k~-~~n~~~~~~~~~~~E~~~la~~~G~~~~  232 (328)
T PRK14618        182 VELGGALKNVIALAAGMVDGLKL-GDNAKAALITRGLREMVRFGVALGAEEA  232 (328)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            99999999999999999999998 6899999999999999999 99999875

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.97  E-value=8.5e-29  Score=237.09  Aligned_cols=204  Identities=26%  Similarity=0.444  Sum_probs=177.8

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ..|||+|||+|+||+++|..|+++ |     |+|++|+|++.                                      
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~-G-----~~V~~~~r~~~--------------------------------------   38 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASAN-G-----HRVRVWSRRSG--------------------------------------   38 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHC-C-----CEEEEEeCCCC--------------------------------------
Confidence            348999999999999999999999 8     99999999752                                      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhh-hhccCCCCEEEEeeecC
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGV  200 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~-l~~~~~~~~Ivs~~kGi  200 (333)
                                                    ++++++++++|+||+++|+.+++++++++.++ +++   ++++|+++||+
T Consensus        39 ------------------------------~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~---~~ivi~~s~gi   85 (308)
T PRK14619         39 ------------------------------LSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPP---ETIIVTATKGL   85 (308)
T ss_pred             ------------------------------CCHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCC---CcEEEEeCCcc
Confidence                                          12335567899999999999999999999874 555   68899999999


Q ss_pred             cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCChhH
Q 019978          201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVT  279 (333)
Q Consensus       201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di~g  279 (333)
                      .+.     +...+++.+++.++.  .++.+++||+++.++..+.++.++. +.+.+..+.++++|+..+++++.++|++|
T Consensus        86 ~~~-----~~~~~s~~~~~~~~~--~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~~~~~~~d~~G  158 (308)
T PRK14619         86 DPE-----TTRTPSQIWQAAFPN--HPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSERFRVYTNSDPLG  158 (308)
T ss_pred             cCC-----CCcCHHHHHHHHcCC--CceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCchh
Confidence            986     467888888877752  4677889999999999887766555 56778899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCCC
Q 019978          280 HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSWQ  330 (333)
Q Consensus       280 ve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~~  330 (333)
                      ++||+++||++||++|+.+++.+ ++|.+++++.+++.|+..+ +++|++..
T Consensus       159 ~~~~~alkNv~ai~~G~~~~~~l-~~N~~~a~~~~~~~E~~~l~~~~G~~~~  209 (308)
T PRK14619        159 TELGGTLKNVIAIAAGVCDGLQL-GTNAKAALVTRALPEMIRVGTHLGAQTE  209 (308)
T ss_pred             hhhHHHHHHHHHHHHHHHHHcCC-CccHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            99999999999999999999988 6899999999999999999 99999764

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=99.97  E-value=1.7e-28  Score=234.70  Aligned_cols=231  Identities=24%  Similarity=0.401  Sum_probs=190.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      ||||+|||+|+||+++|..|+++ |     ++|++|+|+++++++++.++                .++.+.++.     
T Consensus         1 mmkI~iiG~G~mG~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~-----   53 (325)
T PRK00094          1 MMKIAVLGAGSWGTALAIVLARN-G-----HDVTLWARDPEQAAEINADR----------------ENPRYLPGI-----   53 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHHcC----------------cccccCCCC-----
Confidence            58999999999999999999999 8     99999999987765443211                011222211     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                        .++                  .++..+++++++++++|+||+|||+++++++++++.+++++   ++++|+++||+.+
T Consensus        54 --~~~------------------~~~~~~~~~~~~~~~~D~vi~~v~~~~~~~v~~~l~~~~~~---~~~vi~~~ngv~~  110 (325)
T PRK00094         54 --KLP------------------DNLRATTDLAEALADADLILVAVPSQALREVLKQLKPLLPP---DAPIVWATKGIEP  110 (325)
T ss_pred             --cCC------------------CCeEEeCCHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhcCC---CCEEEEEeecccC
Confidence              110                  14666788888888999999999999999999999998876   7899999999998


Q ss_pred             cccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCChhHHH
Q 019978          203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE  281 (333)
Q Consensus       203 ~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di~gve  281 (333)
                      +     +...+++.+++.++.. ....++.||+++.+...+.++.+.. +.+.+..++++++|+..++++..++|+.|.+
T Consensus       111 ~-----~~~~~~~~l~~~~~~~-~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~  184 (325)
T PRK00094        111 G-----TGKLLSEVLEEELPDL-APIAVLSGPSFAKEVARGLPTAVVIASTDEELAERVQELFHSPYFRVYTNTDVIGVE  184 (325)
T ss_pred             C-----CCCcHHHHHHHHcCCC-CceEEEECccHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCCEEEEecCCcchhh
Confidence            6     3567888888877531 2467889999999988887665544 5567789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCCC
Q 019978          282 VMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSWQ  330 (333)
Q Consensus       282 ~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~~  330 (333)
                      |++++||++++++|+..++++ ++|...+++..+++|+..+ +++|.+++
T Consensus       185 ~~k~~~N~~~~~~g~~~~~k~-~~n~~~~~~~~~~~E~~~la~~~G~d~~  233 (325)
T PRK00094        185 LGGALKNVIAIAAGIADGLGL-GDNARAALITRGLAEITRLGVALGANPE  233 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHcCC-CccHHHHHHHHHHHHHHHHHHHhCCChh
Confidence            999999999999999999998 6888999999999999999 99999754

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=99.95  E-value=5.9e-27  Score=203.81  Aligned_cols=153  Identities=32%  Similarity=0.562  Sum_probs=122.0

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR  124 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~  124 (333)
                      ||+|+|+|+||+++|..|+++ |     |+|++|+|+++.++.++.++                .|+.|+++.       
T Consensus         1 KI~ViGaG~~G~AlA~~la~~-g-----~~V~l~~~~~~~~~~i~~~~----------------~n~~~~~~~-------   51 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADN-G-----HEVTLWGRDEEQIEEINETR----------------QNPKYLPGI-------   51 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHC-T-----EEEEEETSCHHHHHHHHHHT----------------SETTTSTTS-------
T ss_pred             CEEEECcCHHHHHHHHHHHHc-C-----CEEEEEeccHHHHHHHHHhC----------------CCCCCCCCc-------
Confidence            799999999999999999999 8     99999999997776544322                466677653       


Q ss_pred             cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcccc
Q 019978          125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAEL  204 (333)
Q Consensus       125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~  204 (333)
                      +++                  .++.+++|++++++++|+||++||+++++++++++++++++   ++++|+++||++.+ 
T Consensus        52 ~l~------------------~~i~~t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~---~~~ii~~~KG~~~~-  109 (157)
T PF01210_consen   52 KLP------------------ENIKATTDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKK---GQIIISATKGFEPG-  109 (157)
T ss_dssp             BEE------------------TTEEEESSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHT---T-EEEETS-SEETT-
T ss_pred             ccC------------------cccccccCHHHHhCcccEEEecccHHHHHHHHHHHhhccCC---CCEEEEecCCcccC-
Confidence            333                  26889999999999999999999999999999999999987   78999999999765 


Q ss_pred             cCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCCh
Q 019978          205 EAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAE  254 (333)
Q Consensus       205 ~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~  254 (333)
                          +..++++++++.++.+  .+++++||++|.|++.+.|+.+++ +.+.
T Consensus       110 ----~~~~~~~~i~~~~~~~--~~~~lsGP~~A~Ei~~~~pt~~~~as~~~  154 (157)
T PF01210_consen  110 ----TLLLLSEVIEEILPIP--RIAVLSGPSFAEEIAEGKPTAVVIASKNE  154 (157)
T ss_dssp             ----EEEEHHHHHHHHHSSC--GEEEEESS--HHHHHTT--EEEEEEESSH
T ss_pred             ----CCccHHHHHHHHhhhc--ceEEeeCccHHHHHHcCCCeEEEEEeccc
Confidence                5789999999999753  389999999999999999988766 4443

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=99.86  E-value=5.8e-21  Score=180.92  Aligned_cols=223  Identities=17%  Similarity=0.170  Sum_probs=162.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|+||+++|..|++. |     ++|++|+|++++++.++.+++                   .+.+  +    
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~~g~-------------------~~~~--~----   49 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQA-G-----HDVTLVARRGAHLDALNENGL-------------------RLED--G----   49 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECChHHHHHHHHcCC-------------------cccC--C----
Confidence            6899999999999999999998 8     999999998766554332111                   1100  0    


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                       ...                  .++..+++.++. +++|+||++||+++++++++++++++.+   ++.||+++||+...
T Consensus        50 -~~~------------------~~~~~~~~~~~~-~~~d~vila~k~~~~~~~~~~l~~~l~~---~~~iv~~~nG~~~~  106 (304)
T PRK06522         50 -EIT------------------VPVLAADDPAEL-GPQDLVILAVKAYQLPAALPSLAPLLGP---DTPVLFLQNGVGHL  106 (304)
T ss_pred             -cee------------------ecccCCCChhHc-CCCCEEEEecccccHHHHHHHHhhhcCC---CCEEEEecCCCCcH
Confidence             000                  023344566554 8999999999999999999999998876   68899999998764


Q ss_pred             ccCCccCCCHHHHHHhHhCCCC------CcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCCh
Q 019978          204 LEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL  277 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~------~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di  277 (333)
                                 +.+.+.++...      ...+.+.+|++......+...........+..+.+.++|+..++.+..++|+
T Consensus       107 -----------~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~~~~l~~~l~~~~~~~~~~~di  175 (304)
T PRK06522        107 -----------EELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAAAEALADLLNAAGLDVEWSPDI  175 (304)
T ss_pred             -----------HHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHHHHHHHHHHHhcCCCCCCChHH
Confidence                       34555554211      0113467888876665443221111122244788999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCC---CCccHHHHHHHHHHHHHHH-HHCCCCCCC
Q 019978          278 VTHEVMGGLKNVYAIGAGMVAALTNE---SATSKSVYFAHCTSEMVVM-HGMGRSWQK  331 (333)
Q Consensus       278 ~gve~~~alkNv~Ai~~Gi~~gl~~~---~~n~~~~l~~~~~~E~~~l-~~~G~~~~~  331 (333)
                      .+.+|.+.+.|+.....+.+.+..++   .++....++..++.|+..+ +++|.++..
T Consensus       176 ~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~  233 (304)
T PRK06522        176 RTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLSV  233 (304)
T ss_pred             HHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCCh
Confidence            99999999999877777777776652   2345679999999999999 999988753

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=99.82  E-value=3.5e-19  Score=169.16  Aligned_cols=222  Identities=18%  Similarity=0.156  Sum_probs=153.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|+||+++|..|+++ |     |+|++|+| +++++.++.++                   .......   ++
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~-g-----~~V~~~~r-~~~~~~~~~~g-------------------~~~~~~~---~~   51 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEA-G-----RDVTFLVR-PKRAKALRERG-------------------LVIRSDH---GD   51 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-C-----CceEEEec-HHHHHHHHhCC-------------------eEEEeCC---Ce
Confidence            7999999999999999999999 8     99999999 65555432211                   1111100   00


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                      ...                    .....++.+++.+++|+||+|+|+++++++++++++++.+   +++|++++||+...
T Consensus        52 ~~~--------------------~~~~~~~~~~~~~~~d~vilavk~~~~~~~~~~l~~~~~~---~~~ii~~~nG~~~~  108 (305)
T PRK12921         52 AVV--------------------PGPVITDPEELTGPFDLVILAVKAYQLDAAIPDLKPLVGE---DTVIIPLQNGIGQL  108 (305)
T ss_pred             EEe--------------------cceeecCHHHccCCCCEEEEEecccCHHHHHHHHHhhcCC---CCEEEEeeCCCChH
Confidence            000                    2234566666668999999999999999999999998876   68899999999764


Q ss_pred             ccCCccCCCHHHHHHhHhCCCCCcE------EEEcCCCchHHHhccCceeEEEe----CChhhHHHHHHHhCCCCeEEEe
Q 019978          204 LEAVPRIITPTQMINRATGVPIENI------LYLGGPNIASEIYNKEYANARIC----GAEKWRKPLAKFLRRPHFTVWD  273 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~~~~------~vl~GP~~a~ev~~~~~~~~~~~----~~~~~~~~l~~ll~~~~~~v~~  273 (333)
                                 +.+.+.++....-.      +.+.+|+......   +..+.++    ...+..+.+.++|...++++..
T Consensus       109 -----------~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~---~~~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~  174 (305)
T PRK12921        109 -----------EQLEPYFGRERVLGGVVFISAQLNGDGVVVQRA---DHRLTFGEIPGQRSERTRAVRDALAGARLEVVL  174 (305)
T ss_pred             -----------HHHHHhCCcccEEEEEEEEEEEECCCeEEEEcC---CCcEEEcCCCCCcCHHHHHHHHHHHhCCCCcee
Confidence                       34566665321101      1222443332221   1111221    1235677899999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHhccCCC---CCccHHHHHHHHHHHHHHH-HHCCCCCCC
Q 019978          274 NGDLVTHEVMGGLKNVYAIGAGMVAALTNE---SATSKSVYFAHCTSEMVVM-HGMGRSWQK  331 (333)
Q Consensus       274 s~Di~gve~~~alkNv~Ai~~Gi~~gl~~~---~~n~~~~l~~~~~~E~~~l-~~~G~~~~~  331 (333)
                      ++|+...+|.+.+.|..-.....+.+.+++   .++....++..+++|+..+ +++|.++..
T Consensus       175 ~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~  236 (305)
T PRK12921        175 SENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPLRD  236 (305)
T ss_pred             cHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCCCh
Confidence            999999999999999755555555554431   2445679999999999999 999988753

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=99.79  E-value=3.1e-18  Score=165.46  Aligned_cols=223  Identities=18%  Similarity=0.166  Sum_probs=153.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +|||+|||+|+||+++|..|+++ |     |+|++|+|++. .+.++.++                   ....+..+  .
T Consensus         2 ~mkI~IiG~G~mG~~~A~~L~~~-G-----~~V~~~~r~~~-~~~~~~~g-------------------~~~~~~~~--~   53 (341)
T PRK08229          2 MARICVLGAGSIGCYLGGRLAAA-G-----ADVTLIGRARI-GDELRAHG-------------------LTLTDYRG--R   53 (341)
T ss_pred             CceEEEECCCHHHHHHHHHHHhc-C-----CcEEEEecHHH-HHHHHhcC-------------------ceeecCCC--c
Confidence            47999999999999999999999 8     99999999752 23222111                   01110000  0


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                      +....                 ..++.++++. +++.++|+||++||+..+.++++.+.+++++   +++|++++||+..
T Consensus        54 ~~~~~-----------------~~~~~~~~~~-~~~~~~D~vil~vk~~~~~~~~~~l~~~~~~---~~iii~~~nG~~~  112 (341)
T PRK08229         54 DVRVP-----------------PSAIAFSTDP-AALATADLVLVTVKSAATADAAAALAGHARP---GAVVVSFQNGVRN  112 (341)
T ss_pred             ceecc-----------------cceeEeccCh-hhccCCCEEEEEecCcchHHHHHHHHhhCCC---CCEEEEeCCCCCc
Confidence            00000                 0135556666 4578999999999999999999999998876   7889999999886


Q ss_pred             cccCCccCCCHHHHHHhHhCCCCC-----cE-EEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCC
Q 019978          203 ELEAVPRIITPTQMINRATGVPIE-----NI-LYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD  276 (333)
Q Consensus       203 ~~~~~~~~~~~se~i~~~lg~~~~-----~~-~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~D  276 (333)
                      .           +.+++.++....     ++ ++..||.++.....+..   .+. ..+..+.++++|+..+++++.++|
T Consensus       113 ~-----------~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l---~~~-~~~~~~~~~~~l~~~g~~~~~~~d  177 (341)
T PRK08229        113 A-----------DVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGAL---AIE-ASPALRPFAAAFARAGLPLVTHED  177 (341)
T ss_pred             H-----------HHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCce---Eec-CCchHHHHHHHHHhcCCCceecch
Confidence            4           345665543110     11 24568877653333321   122 234568999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhccCCC---CCccHHHHHHHHHHHHHHH-HHCCCCCC
Q 019978          277 LVTHEVMGGLKNVYAIGAGMVAALTNE---SATSKSVYFAHCTSEMVVM-HGMGRSWQ  330 (333)
Q Consensus       277 i~gve~~~alkNv~Ai~~Gi~~gl~~~---~~n~~~~l~~~~~~E~~~l-~~~G~~~~  330 (333)
                      +.+.+|.+.++|.. .+...+.+..++   .+.....++..++.|...+ ++.|.++.
T Consensus       178 i~~~~w~Kl~~N~~-~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a~Gi~~~  234 (341)
T PRK08229        178 MRAVQWAKLLLNLN-NAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKAAGIRPA  234 (341)
T ss_pred             hHHHHHHHHHHHhc-cHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHHcCCCcc
Confidence            99999999999974 333333343331   1334558999999999999 99998754

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=99.78  E-value=4.3e-18  Score=163.39  Aligned_cols=226  Identities=16%  Similarity=0.163  Sum_probs=155.5

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ..|||+|||+|+||+.+|..|+++ |     ++|++|.|++.  +.++.++                   ..+....   
T Consensus         4 ~~m~I~IiG~GaiG~~lA~~L~~~-g-----~~V~~~~r~~~--~~~~~~g-------------------~~~~~~~---   53 (313)
T PRK06249          4 ETPRIGIIGTGAIGGFYGAMLARA-G-----FDVHFLLRSDY--EAVRENG-------------------LQVDSVH---   53 (313)
T ss_pred             cCcEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEEeCCH--HHHHhCC-------------------eEEEeCC---
Confidence            348999999999999999999999 8     99999999862  3222211                   1111000   


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                      ++...                   ..+.+.++.+ ....+|+||+|||+.++.++++.+++++.+   ++.|++++||+.
T Consensus        54 ~~~~~-------------------~~~~~~~~~~-~~~~~D~vilavK~~~~~~~~~~l~~~~~~---~~~iv~lqNG~~  110 (313)
T PRK06249         54 GDFHL-------------------PPVQAYRSAE-DMPPCDWVLVGLKTTANALLAPLIPQVAAP---DAKVLLLQNGLG  110 (313)
T ss_pred             CCeee-------------------cCceEEcchh-hcCCCCEEEEEecCCChHhHHHHHhhhcCC---CCEEEEecCCCC
Confidence            00000                   1244455554 367899999999999999999999999887   788999999998


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCc------EEEEcCCCchHHHhccCceeEEEeC-C-----hhhHHHHHHHhCCCCe
Q 019978          202 AELEAVPRIITPTQMINRATGVPIEN------ILYLGGPNIASEIYNKEYANARICG-A-----EKWRKPLAKFLRRPHF  269 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~------~~vl~GP~~a~ev~~~~~~~~~~~~-~-----~~~~~~l~~ll~~~~~  269 (333)
                      ..           +.+.+.+|....-      -+...+|.+......+........+ +     .+..+.+.++|+..++
T Consensus       111 ~~-----------e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~  179 (313)
T PRK06249        111 VE-----------EQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGPAADDGITARVEEGAALFRAAGI  179 (313)
T ss_pred             cH-----------HHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCCCcccchHHHHHHHHHHHHHhCCC
Confidence            75           4566667532100      1233466554432223222111222 2     3456788999999999


Q ss_pred             EEEecCChhHHHHHHHHHHHHHHHHHHHhccCCCC---CccHHHHHHHHHHHHHHH-HHCCCCCCC
Q 019978          270 TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNES---ATSKSVYFAHCTSEMVVM-HGMGRSWQK  331 (333)
Q Consensus       270 ~v~~s~Di~gve~~~alkNv~Ai~~Gi~~gl~~~~---~n~~~~l~~~~~~E~~~l-~~~G~~~~~  331 (333)
                      .+..++|+....|.+.+.|..-.....+.+..++.   +.....++.+++.|+..+ ++.|.++..
T Consensus       180 ~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~Gi~~~~  245 (313)
T PRK06249        180 DSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVIQGAAACGHTLPE  245 (313)
T ss_pred             CceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHHHHHHhcCCCCCh
Confidence            99999999999999999998555555555554421   223458999999999999 899987653

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=99.76  E-value=6.6e-18  Score=161.82  Aligned_cols=222  Identities=11%  Similarity=0.033  Sum_probs=150.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      .|||+|+|+|++|+.+|..|++. |     ++|++++|+++++++++.++                  ...+...    +
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~-G-----~~V~lv~r~~~~~~~i~~~~------------------Gl~i~~~----g   53 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARA-G-----LPVRLILRDRQRLAAYQQAG------------------GLTLVEQ----G   53 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEechHHHHHHhhcC------------------CeEEeeC----C
Confidence            48999999999999999999999 8     99999999877776554321                  0011100    0


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                      + .          +  .      .++...+.  +..+.+|+||+|||++++.++++++++++.+   ++.||+++||+..
T Consensus        54 ~-~----------~--~------~~~~~~~~--~~~~~~D~viv~vK~~~~~~al~~l~~~l~~---~t~vv~lQNGv~~  109 (305)
T PRK05708         54 Q-A----------S--L------YAIPAETA--DAAEPIHRLLLACKAYDAEPAVASLAHRLAP---GAELLLLQNGLGS  109 (305)
T ss_pred             c-c----------e--e------eccCCCCc--ccccccCEEEEECCHHhHHHHHHHHHhhCCC---CCEEEEEeCCCCC
Confidence            0 0          0  0      01111111  2245789999999999999999999999987   7899999999997


Q ss_pred             cccCCccCCCHHHHHHhHhCCCCCcE------EEEcCCCchHHHhccCceeEEEe-CChhhHHHHHHHhCCCCeEEEecC
Q 019978          203 ELEAVPRIITPTQMINRATGVPIENI------LYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNG  275 (333)
Q Consensus       203 ~~~~~~~~~~~se~i~~~lg~~~~~~------~vl~GP~~a~ev~~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~v~~s~  275 (333)
                      .           +.+++.++....-.      +...+|........+.   ..++ .+.+..+.+.++|+..++.+.+++
T Consensus       110 ~-----------e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~---~~~G~~~~~~~~~l~~~l~~ag~~~~~~~  175 (305)
T PRK05708        110 Q-----------DAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGF---TWLGDPRNPTAPAWLDDLREAGIPHEWTV  175 (305)
T ss_pred             H-----------HHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEE---EEEcCCCCcchHHHHHHHHhcCCCCccCH
Confidence            6           45666675321101      1222454433222111   1122 223567889999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCCC
Q 019978          276 DLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSWQ  330 (333)
Q Consensus       276 Di~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~~  330 (333)
                      |+.+..|.+.+.|..-.....+.+..++.--....++...+.|+..+ ++.|.+..
T Consensus       176 di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~  231 (305)
T PRK05708        176 DILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAA  231 (305)
T ss_pred             HHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            99999999999998545555555555532111126788999999999 89997654

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=99.74  E-value=4.1e-17  Score=156.67  Aligned_cols=224  Identities=17%  Similarity=0.197  Sum_probs=159.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|+|+|+||+.++..|++. |     ++|+++.|++. +++++.++|                   .+.+..+    
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~-g-----~~V~~~~R~~~-~~~l~~~GL-------------------~i~~~~~----   50 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKA-G-----HDVTLLVRSRR-LEALKKKGL-------------------RIEDEGG----   50 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhC-C-----CeEEEEecHHH-HHHHHhCCe-------------------EEecCCC----
Confidence            7999999999999999999999 8     89999999985 666554432                   1111100    


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                      ...                   .....+++. +....+|+||++||+.+++++++.+.+++++   ++.|++++||+...
T Consensus        51 ~~~-------------------~~~~~~~~~-~~~~~~Dlviv~vKa~q~~~al~~l~~~~~~---~t~vl~lqNG~g~~  107 (307)
T COG1893          51 NFT-------------------TPVVAATDA-EALGPADLVIVTVKAYQLEEALPSLAPLLGP---NTVVLFLQNGLGHE  107 (307)
T ss_pred             ccc-------------------cccccccCh-hhcCCCCEEEEEeccccHHHHHHHhhhcCCC---CcEEEEEeCCCcHH
Confidence            000                   012223333 4466999999999999999999999999998   88999999999986


Q ss_pred             ccCCccCCCHHHHHHhHhCCCC------CcEEEEcCCCchHHHhccCceeEEEe-CChhhHHHHHHHhCCCCeEEEecCC
Q 019978          204 LEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNGD  276 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~------~~~~vl~GP~~a~ev~~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~v~~s~D  276 (333)
                                 |.+.+.++...      ...++..||........+........ ..++..+.+.++|+..++++.+++|
T Consensus       108 -----------e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~~~~~~i~~~~~~a~~~~~~~~d  176 (307)
T COG1893         108 -----------EELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRDELVKALAELFKEAGLEVELHPD  176 (307)
T ss_pred             -----------HHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence                       44666554320      11235556666654443333332222 2346899999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhccCCCC--Cc-cHHHHHHHHHHHHHHH-HHCCCCCCC
Q 019978          277 LVTHEVMGGLKNVYAIGAGMVAALTNES--AT-SKSVYFAHCTSEMVVM-HGMGRSWQK  331 (333)
Q Consensus       277 i~gve~~~alkNv~Ai~~Gi~~gl~~~~--~n-~~~~l~~~~~~E~~~l-~~~G~~~~~  331 (333)
                      +....|-+.+.|..-.....+....++.  .+ ....++.+.+.|...+ .+.|..+..
T Consensus       177 i~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~~  235 (307)
T COG1893         177 ILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELPE  235 (307)
T ss_pred             HHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCCH
Confidence            9999999999997444455554444322  33 3459999999999999 888866543

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=99.72  E-value=2.4e-16  Score=156.75  Aligned_cols=218  Identities=17%  Similarity=0.186  Sum_probs=148.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|.||..+|..|+++ |     |+|++|++++++++.++         .+        ..+.+.+++.     
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~-G-----~~V~~~d~~~~~v~~l~---------~g--------~~~~~e~~l~-----   52 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADL-G-----HEVTGVDIDQEKVDKLN---------KG--------KSPIYEPGLD-----   52 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhc-C-----CeEEEEECCHHHHHHhh---------cC--------CCCCCCCCHH-----
Confidence            6899999999999999999999 8     99999999998776543         11        1233333321     


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------hHHHHHHHHHhhhhccCCCCEE
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI  193 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~----------~~~~vl~~i~~~l~~~~~~~~I  193 (333)
                            |++.+....       .+++++++++++++++|+||+|||+.          .+.++++.+.+.+++   +++|
T Consensus        53 ------~~~~~~~~~-------g~l~~~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~---g~lv  116 (411)
T TIGR03026        53 ------ELLAKALAA-------GRLRATTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRK---GATV  116 (411)
T ss_pred             ------HHHHHhhhc-------CCeEEECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCC---CCEE
Confidence                  122111100       14778889888889999999999975          488888888888776   6666


Q ss_pred             EEeeecCcccccCCccCCCH-HHHHHhHhCCC-CCcEEEEcCCCchHHHhc----cCceeEEEeCChhhHHHHHHHhCCC
Q 019978          194 ISLAKGVEAELEAVPRIITP-TQMINRATGVP-IENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLRRP  267 (333)
Q Consensus       194 vs~~kGi~~~~~~~~~~~~~-se~i~~~lg~~-~~~~~vl~GP~~a~ev~~----~~~~~~~~~~~~~~~~~l~~ll~~~  267 (333)
                      +. ..++.+++     ...+ .+++++..|.. ...+.+.++|.++.+...    ..+..++++.+++..+.++++|+..
T Consensus       117 i~-~STv~pgt-----~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~  190 (411)
T TIGR03026       117 VL-ESTVPPGT-----TEEVVKPILERASGLKLGEDFYLAYNPEFLREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPI  190 (411)
T ss_pred             EE-eCcCCCCc-----hHHHHHHHHHhhcCCCCCCCceEEECCCcCCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHh
Confidence            64 44777663     2223 23333323321 233668899999876542    2234455567778889999999876


Q ss_pred             C-eEEEecCChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCC
Q 019978          268 H-FTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSW  329 (333)
Q Consensus       268 ~-~~v~~s~Di~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~  329 (333)
                      + ..++...|+...|.++.+.|.+.                  +.....++|+..+ +++|.++
T Consensus       191 ~~~~~~~~~~~~~Ae~~Kl~~N~~~------------------a~~ia~~nE~~~la~~~GiD~  236 (411)
T TIGR03026       191 IEDGPVLVTSIETAEMIKLAENTFR------------------AVKIAFANELARICEALGIDV  236 (411)
T ss_pred             ccCCCEEcCCHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhCCCH
Confidence            5 36677889999999999999861                  1122346777777 6777654

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.69  E-value=1e-15  Score=144.67  Aligned_cols=164  Identities=16%  Similarity=0.073  Sum_probs=125.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      +||+|||+|+||.+|+..|.++ |++.+ .+|++|+|++++++++.        ++                        
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~-g~~~~-~~I~v~~r~~~~~~~l~--------~~------------------------   48 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINK-NIVSP-DQIICSDLNVSNLKNAS--------DK------------------------   48 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHC-CCCCC-ceEEEECCCHHHHHHHH--------Hh------------------------
Confidence            5899999999999999999988 74333 57999999876543210        00                        


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                        +                    .+..+++.++.+++||+||+|||++.+.++++++.+++++   ++++||+..|+..+
T Consensus        49 --~--------------------g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl~~l~~~~~~---~~lvISi~AGi~i~  103 (272)
T PRK12491         49 --Y--------------------GITITTNNNEVANSADILILSIKPDLYSSVINQIKDQIKN---DVIVVTIAAGKSIK  103 (272)
T ss_pred             --c--------------------CcEEeCCcHHHHhhCCEEEEEeChHHHHHHHHHHHHhhcC---CcEEEEeCCCCcHH
Confidence              0                    2344566777788999999999999999999999998876   68999999999985


Q ss_pred             ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCChhHH
Q 019978          204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH  280 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di~gv  280 (333)
                                  .|++.++..  .-.++.+||++..+.++...+... ..++++.+.+.++|+..|..++..++.+.+
T Consensus       104 ------------~l~~~l~~~--~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~E~~~d~  167 (272)
T PRK12491        104 ------------STENEFDRK--LKVIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQTEVVNEKLMDV  167 (272)
T ss_pred             ------------HHHHhcCCC--CcEEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCCEEEEcHHHhhh
Confidence                        377777532  236899999999999885554321 234567899999999998877777665553

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=99.69  E-value=3.4e-16  Score=147.34  Aligned_cols=215  Identities=16%  Similarity=0.148  Sum_probs=148.6

Q ss_pred             HHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcCCcccchhhh
Q 019978           53 AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEIL  132 (333)
Q Consensus        53 ~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~  132 (333)
                      +||+.+|..|+++ |     |+|++|+|+ ++++.++.+++                   .+.+..+   +...      
T Consensus         1 aiG~~~a~~L~~~-G-----~~V~l~~r~-~~~~~i~~~Gl-------------------~i~~~~~---~~~~------   45 (293)
T TIGR00745         1 AVGSLYGAYLARA-G-----HDVTLLARG-EQLEALNQEGL-------------------RIVSLGG---EFQF------   45 (293)
T ss_pred             CchHHHHHHHHhC-C-----CcEEEEecH-HHHHHHHHCCc-------------------EEEecCC---cEEE------
Confidence            5899999999999 8     999999997 45554433221                   1111000   0000      


Q ss_pred             hccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCC
Q 019978          133 KDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIIT  212 (333)
Q Consensus       133 ~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~  212 (333)
                                   .++.+++++++ ...+|+||+|||+++++++++.+++++.+   +++|++++||+...         
T Consensus        46 -------------~~~~~~~~~~~-~~~~D~iiv~vKs~~~~~~l~~l~~~l~~---~~~iv~~qNG~g~~---------   99 (293)
T TIGR00745        46 -------------RPVSAATSPEE-LPPADLVIITVKAYQTEEAAALLLPLIGK---NTKVLFLQNGLGHE---------   99 (293)
T ss_pred             -------------cccccccChhh-cCCCCEEEEeccchhHHHHHHHhHhhcCC---CCEEEEccCCCCCH---------
Confidence                         02345566665 67899999999999999999999999987   78999999999875         


Q ss_pred             HHHHHHhHhCCCC------CcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCChhHHHHHHHH
Q 019978          213 PTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGL  286 (333)
Q Consensus       213 ~se~i~~~lg~~~------~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di~gve~~~al  286 (333)
                        +.+.+.++.+.      ...+.+.+|++......+...........+..+.+.++|+..++++..++|+.+.+|.+.+
T Consensus       100 --~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~  177 (293)
T TIGR00745       100 --ERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAELLNEAGIPAELHGDILAAIWKKLL  177 (293)
T ss_pred             --HHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHHHHhCCCCCEecchHHHHHHHHHh
Confidence              45666665321      0113455776554443332211111111255788999999999999999999999999999


Q ss_pred             HHH-HHHHHHHHhccCCC---CCccHHHHHHHHHHHHHHH-HHCCCCCCC
Q 019978          287 KNV-YAIGAGMVAALTNE---SATSKSVYFAHCTSEMVVM-HGMGRSWQK  331 (333)
Q Consensus       287 kNv-~Ai~~Gi~~gl~~~---~~n~~~~l~~~~~~E~~~l-~~~G~~~~~  331 (333)
                      .|+ ++..+++.. ..++   .+.....++...+.|+..+ +++|.++..
T Consensus       178 ~N~~~n~l~al~~-~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~  226 (293)
T TIGR00745       178 VNAAINPLTALLD-CKNGELLENPEARELLRRLMDEVVRVARAEGVDLPD  226 (293)
T ss_pred             heechhHHHHHHC-CccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence            998 444555554 3332   1223559999999999999 999987754

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.66  E-value=1.1e-14  Score=134.39  Aligned_cols=161  Identities=16%  Similarity=0.157  Sum_probs=119.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC-CcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP-GRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~-~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .+||+|||+|.||++++..+.++ |.... .++.+++|+ +++++++.         .                      
T Consensus         4 ~~kI~iIG~G~mg~ala~~l~~~-~~~~~-~~i~~~~~~~~~~~~~~~---------~----------------------   50 (245)
T PRK07634          4 KHRILFIGAGRMAEAIFSGLLKT-SKEYI-EEIIVSNRSNVEKLDQLQ---------A----------------------   50 (245)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhC-CCCCc-CeEEEECCCCHHHHHHHH---------H----------------------
Confidence            47999999999999999999887 52110 136677764 33322110         0                      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                         .                    .++..++|.+++++++|+||+++|++.++++++++.++++    +++|||+++|+.
T Consensus        51 ---~--------------------~~~~~~~~~~~~~~~~DiViiavp~~~~~~v~~~l~~~~~----~~~vis~~~gi~  103 (245)
T PRK07634         51 ---R--------------------YNVSTTTDWKQHVTSVDTIVLAMPPSAHEELLAELSPLLS----NQLVVTVAAGIG  103 (245)
T ss_pred             ---H--------------------cCcEEeCChHHHHhcCCEEEEecCHHHHHHHHHHHHhhcc----CCEEEEECCCCC
Confidence               0                    0234557788888999999999999999999999998765    468999999998


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCCh
Q 019978          202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDL  277 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di  277 (333)
                      .+            .|++.++..  ...++.||+++.++..+.+..... +.+++..+.++++|+..|-.+++.++.
T Consensus       104 ~~------------~l~~~~~~~--~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~e~~  166 (245)
T PRK07634        104 PS------------YLEERLPKG--TPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQLCTEEE  166 (245)
T ss_pred             HH------------HHHHHcCCC--CeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEEEECHHH
Confidence            75            377777632  235689999999999997776543 456678899999999988777665443

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.66  E-value=4.2e-15  Score=139.59  Aligned_cols=185  Identities=22%  Similarity=0.205  Sum_probs=137.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +|||+|||+|+||.+|+..|.++ |.+.+ .+|.+.+|++++.+++.         .                       
T Consensus         1 ~~~IgfIG~G~Mg~Ai~~gl~~~-g~~~~-~~I~v~~~~~e~~~~l~---------~-----------------------   46 (266)
T COG0345           1 MMKIGFIGAGNMGEAILSGLLKS-GALPP-EEIIVTNRSEEKRAALA---------A-----------------------   46 (266)
T ss_pred             CceEEEEccCHHHHHHHHHHHhc-CCCCc-ceEEEeCCCHHHHHHHH---------H-----------------------
Confidence            57999999999999999999998 74444 68999999887543110         0                       


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                        .+                    ++..+++.+++++.+|+||+|||++.+++++.++++ +.+   +++|||+..|+..
T Consensus        47 --~~--------------------g~~~~~~~~~~~~~advv~LavKPq~~~~vl~~l~~-~~~---~~lvISiaAGv~~  100 (266)
T COG0345          47 --EY--------------------GVVTTTDNQEAVEEADVVFLAVKPQDLEEVLSKLKP-LTK---DKLVISIAAGVSI  100 (266)
T ss_pred             --Hc--------------------CCcccCcHHHHHhhCCEEEEEeChHhHHHHHHHhhc-ccC---CCEEEEEeCCCCH
Confidence              01                    122367777889999999999999999999999998 444   7899999999997


Q ss_pred             cccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEE-EeCChhhHHHHHHHhCCCCeEEEecCChhHHH
Q 019978          203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANAR-ICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE  281 (333)
Q Consensus       203 ~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~-~~~~~~~~~~l~~ll~~~~~~v~~s~Di~gve  281 (333)
                      +            .+++.+| . . ..++.+||++..+.++.+.+.. ...+++..+.+.++|+..|-.+++.++.+.+-
T Consensus       101 ~------------~l~~~l~-~-~-~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~v~~v~E~~~da~  165 (266)
T COG0345         101 E------------TLERLLG-G-L-RVVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGKVVEVEESLMDAV  165 (266)
T ss_pred             H------------HHHHHcC-C-C-ceEEeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCCeEEechHHhhHH
Confidence            5            4788887 2 2 3588999999999998665432 23456788899999999998888877766542


Q ss_pred             --HHH---H--HHHHHHHH-HHHHhccCC
Q 019978          282 --VMG---G--LKNVYAIG-AGMVAALTN  302 (333)
Q Consensus       282 --~~~---a--lkNv~Ai~-~Gi~~gl~~  302 (333)
                        ++|   +  +.-+-|+. +|+-.|+..
T Consensus       166 TaisGSgPAyv~~~iEal~~agv~~Gl~~  194 (266)
T COG0345         166 TALSGSGPAYVFLFIEALADAGVRLGLPR  194 (266)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHcCCCH
Confidence              222   2  22334554 566566654

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.63  E-value=6.1e-15  Score=139.56  Aligned_cols=164  Identities=12%  Similarity=0.061  Sum_probs=122.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc-hhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~-~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      |+||+|||+|+||++++..|.++ |.+.+ ++|.+|+|+++. ++.+         ..            . .       
T Consensus         1 m~~I~iIG~G~mG~ala~~L~~~-g~~~~-~~V~~~~r~~~~~~~~l---------~~------------~-~-------   49 (277)
T PRK06928          1 MEKIGFIGYGSMADMIATKLLET-EVATP-EEIILYSSSKNEHFNQL---------YD------------K-Y-------   49 (277)
T ss_pred             CCEEEEECccHHHHHHHHHHHHC-CCCCc-ccEEEEeCCcHHHHHHH---------HH------------H-c-------
Confidence            47999999999999999999988 63333 689999987532 1110         00            0 0       


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                              ..+.++.+.+++++++|+||+|+|++.+.++++++++++.+   ++.|||+++|++
T Consensus        50 ------------------------~~~~~~~~~~e~~~~aDvVilavpp~~~~~vl~~l~~~l~~---~~~ivS~~aGi~  102 (277)
T PRK06928         50 ------------------------PTVELADNEAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTP---DRHVVSIAAGVS  102 (277)
T ss_pred             ------------------------CCeEEeCCHHHHHhhCCEEEEecCHHHHHHHHHHHHhhcCC---CCEEEEECCCCC
Confidence                                    02344567777788999999999999999999999998876   678999999999


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCChhH
Q 019978          202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVT  279 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di~g  279 (333)
                      .+            .|++.++.  . -.++.+||++..+.++.+.+... ..+++..+.+..+|+..|..++++++.+.
T Consensus       103 ~~------------~l~~~~~~--~-~vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~~~d  166 (277)
T PRK06928        103 LD------------DLLEITPG--L-QVSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVMTIREENMD  166 (277)
T ss_pred             HH------------HHHHHcCC--C-CEEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCCEEEEchhhCc
Confidence            75            36777753  2 36899999999999885543221 23456788999999999888777665444

>PRK07680 late competence protein ComER; Validated

Probab=99.61  E-value=6.1e-14  Score=132.14  Aligned_cols=162  Identities=11%  Similarity=0.175  Sum_probs=119.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|+||++++..|.++ |.+.+ ++|.+|+|++++++++.         +             ..+        
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~-g~~~~-~~v~v~~r~~~~~~~~~---------~-------------~~~--------   48 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLES-GAVKP-SQLTITNRTPAKAYHIK---------E-------------RYP--------   48 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHC-CCCCc-ceEEEECCCHHHHHHHH---------H-------------HcC--------
Confidence            6899999999999999999988 73322 47999999876543210         0             000        


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                                             .+..+.+.++++.++|+||+|+|++.+.++++++.+++.+   +++|+++++|+...
T Consensus        49 -----------------------g~~~~~~~~~~~~~aDiVilav~p~~~~~vl~~l~~~l~~---~~~iis~~ag~~~~  102 (273)
T PRK07680         49 -----------------------GIHVAKTIEEVISQSDLIFICVKPLDIYPLLQKLAPHLTD---EHCLVSITSPISVE  102 (273)
T ss_pred             -----------------------CeEEECCHHHHHHhCCEEEEecCHHHHHHHHHHHHhhcCC---CCEEEEECCCCCHH
Confidence                                   2445667777788999999999999999999999998876   67999999988643


Q ss_pred             ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEe--CChhhHHHHHHHhCCCCeEEEecCChhHH
Q 019978          204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLVTH  280 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v~~s~Di~gv  280 (333)
                                  .+++.++.    ..+...|+.+.....|.... ..+  .+++..+.+.++|+..|..+++.+|+...
T Consensus       103 ------------~L~~~~~~----~~~r~~p~~~~~~~~G~t~~-~~g~~~~~~~~~~~~~ll~~~G~~~~i~e~~~~~  164 (273)
T PRK07680        103 ------------QLETLVPC----QVARIIPSITNRALSGASLF-TFGSRCSEEDQQKLERLFSNISTPLVIEEDITRV  164 (273)
T ss_pred             ------------HHHHHcCC----CEEEECCChHHHHhhccEEE-eeCCCCCHHHHHHHHHHHHcCCCEEEEChHhcch
Confidence                        36666652    24667898886665664332 222  24456789999999999888888885443

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.59  E-value=1.5e-13  Score=129.95  Aligned_cols=163  Identities=17%  Similarity=0.168  Sum_probs=118.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc-chhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .|||+|||+|+||++|+..|.++ |.+.+ ++|++|+|+.+ +++.+.         .               .      
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~-g~~~~-~~v~v~~r~~~~~~~~l~---------~---------------~------   50 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHA-NVVKG-EQITVSNRSNETRLQELH---------Q---------------K------   50 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHC-CCCCc-ceEEEECCCCHHHHHHHH---------H---------------h------
Confidence            37999999999999999999988 63333 78999999763 222110         0               0      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                              .++..+.++.++++++|+||+|||++.+.++++++.+.+.+   +++||++++|+.
T Consensus        51 ------------------------~g~~~~~~~~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~---~~liIs~~aGi~  103 (279)
T PRK07679         51 ------------------------YGVKGTHNKKELLTDANILFLAMKPKDVAEALIPFKEYIHN---NQLIISLLAGVS  103 (279)
T ss_pred             ------------------------cCceEeCCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEECCCCC
Confidence                                    02445567778888999999999999999999999988766   689999999998


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEe--CChhhHHHHHHHhCCCCeEEEecCChhH
Q 019978          202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLVT  279 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v~~s~Di~g  279 (333)
                      .+            .+++.++..  ...+...|+++..+..+.+.. ...  .+++..+.++.+|+..|-.+++.++.+.
T Consensus       104 ~~------------~l~~~~~~~--~~v~r~mPn~~~~~~~~~t~~-~~~~~~~~~~~~~v~~l~~~~G~~~~v~e~~~~  168 (279)
T PRK07679        104 TH------------SIRNLLQKD--VPIIRAMPNTSAAILKSATAI-SPSKHATAEHIQTAKALFETIGLVSVVEEEDMH  168 (279)
T ss_pred             HH------------HHHHHcCCC--CeEEEECCCHHHHHhcccEEE-eeCCCCCHHHHHHHHHHHHhCCcEEEeCHHHhh
Confidence            75            255555421  235788999988777664432 222  2345788999999998877776655444

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=99.58  E-value=9.4e-14  Score=130.26  Aligned_cols=155  Identities=15%  Similarity=0.166  Sum_probs=115.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|+||++++..|.++ +.+.+ .++++++|+++..                                      
T Consensus         4 mkI~iIG~G~mG~ai~~~l~~~-~~~~~-~~i~~~~~~~~~~--------------------------------------   43 (260)
T PTZ00431          4 IRVGFIGLGKMGSALAYGIENS-NIIGK-ENIYYHTPSKKNT--------------------------------------   43 (260)
T ss_pred             CEEEEECccHHHHHHHHHHHhC-CCCCc-ceEEEECCChhcC--------------------------------------
Confidence            7999999999999999999987 64332 3577777765321                                      


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                                             .+....+..++++++|+||+|+|++.++++++++++++++    ..|||.++|+..+
T Consensus        44 -----------------------~~~~~~~~~~~~~~~D~Vilavkp~~~~~vl~~i~~~l~~----~~iIS~~aGi~~~   96 (260)
T PTZ00431         44 -----------------------PFVYLQSNEELAKTCDIIVLAVKPDLAGKVLLEIKPYLGS----KLLISICGGLNLK   96 (260)
T ss_pred             -----------------------CeEEeCChHHHHHhCCEEEEEeCHHHHHHHHHHHHhhccC----CEEEEEeCCccHH
Confidence                                   1123355666778999999999999999999999988764    5789999999964


Q ss_pred             ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCChhH
Q 019978          204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVT  279 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di~g  279 (333)
                                  .+++.++..  ...++.+|+++..+.++...+... ..+++..+.++++|+..|..+++.++.+.
T Consensus        97 ------------~l~~~~~~~--~~vvr~mPn~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~~~d  159 (260)
T PTZ00431         97 ------------TLEEMVGVE--AKIVRVMPNTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGIIQEIKEKDMD  159 (260)
T ss_pred             ------------HHHHHcCCC--CeEEEECCCchhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCcEEEEChHHcc
Confidence                        366766532  235789999998887664333211 22446789999999999998888766444

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.55  E-value=4e-13  Score=125.68  Aligned_cols=157  Identities=16%  Similarity=0.115  Sum_probs=113.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEE-ecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~-~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      |||+|||+|+||++|+..|.++ |++.+ .+|++| +|++++.+.+.                          .      
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~-g~~~~-~~i~v~~~r~~~~~~~~~--------------------------~------   46 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVAS-GVVPP-SRISTADDSNPARRDVFQ--------------------------S------   46 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHC-CCCCc-ceEEEEeCCCHHHHHHHH--------------------------H------
Confidence            7999999999999999999998 72222 388888 88876432210                          0      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                                             ..+...++.+++++++|+||+|+|++.++++++++.+.+.+   +++||++++|+..
T Consensus        47 -----------------------~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~~l~~~~~~---~~~iIs~~~g~~~  100 (266)
T PLN02688         47 -----------------------LGVKTAASNTEVVKSSDVIILAVKPQVVKDVLTELRPLLSK---DKLLVSVAAGITL  100 (266)
T ss_pred             -----------------------cCCEEeCChHHHHhcCCEEEEEECcHHHHHHHHHHHhhcCC---CCEEEEecCCCcH
Confidence                                   02345567777788999999999999999999999887766   6889999988865


Q ss_pred             cccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecC
Q 019978          203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNG  275 (333)
Q Consensus       203 ~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~  275 (333)
                      +            .+++.++..  + .+..+|+++..+..+...++.. ..+++..+.++.+|+..|-.++..+
T Consensus       101 ~------------~l~~~~~~~--~-vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~~~~~~e  159 (266)
T PLN02688        101 A------------DLQEWAGGR--R-VVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGKIWVVDE  159 (266)
T ss_pred             H------------HHHHHcCCC--C-EEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCH
Confidence            4            355656532  2 3557999998776664333222 2356788999999998887334433

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.52  E-value=1e-12  Score=123.01  Aligned_cols=155  Identities=20%  Similarity=0.190  Sum_probs=112.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +|||+|||+|+||++++..|.++ |. .. ++|.+|+|++++++++..                      .+        
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~-g~-~~-~~v~v~~r~~~~~~~~~~----------------------~~--------   48 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLAS-GV-PA-KDIIVSDPSPEKRAALAE----------------------EY--------   48 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhC-CC-Cc-ceEEEEcCCHHHHHHHHH----------------------hc--------
Confidence            58999999999999999999987 62 22 579999999865432110                      00        


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                                              .+.++++.++.+.++|+||+|+|++.+.++++++.+++ +    +.||++++|+..
T Consensus        49 ------------------------g~~~~~~~~~~~~~advVil~v~~~~~~~v~~~l~~~~-~----~~vvs~~~gi~~   99 (267)
T PRK11880         49 ------------------------GVRAATDNQEAAQEADVVVLAVKPQVMEEVLSELKGQL-D----KLVVSIAAGVTL   99 (267)
T ss_pred             ------------------------CCeecCChHHHHhcCCEEEEEcCHHHHHHHHHHHHhhc-C----CEEEEecCCCCH
Confidence                                    12344566677889999999999999999999998876 3    589999999865


Q ss_pred             cccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEe--CChhhHHHHHHHhCCCCeEEEec
Q 019978          203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN  274 (333)
Q Consensus       203 ~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v~~s  274 (333)
                      +            .+++.++.. . -.+...|+++..+..+... ++..  .+++..+.++.+|+..|..+++.
T Consensus       100 ~------------~l~~~~~~~-~-~iv~~~P~~p~~~~~~~~~-i~~~~~~~~~~~~~v~~l~~~lG~~~~~~  158 (267)
T PRK11880        100 A------------RLERLLGAD-L-PVVRAMPNTPALVGAGMTA-LTANALVSAEDRELVENLLSAFGKVVWVD  158 (267)
T ss_pred             H------------HHHHhcCCC-C-cEEEecCCchHHHcCceEE-EecCCCCCHHHHHHHHHHHHhCCeEEEEC
Confidence            3            466666522 2 2466889998776665332 2222  35667889999999988766665

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=99.50  E-value=9.8e-13  Score=120.24  Aligned_cols=179  Identities=19%  Similarity=0.202  Sum_probs=120.7

Q ss_pred             ceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        44 ~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      |||+||| +|+||++++..|+++ |     |+|++|+|++++++.+..+.+                  ..+..      
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~-G-----~~V~v~~r~~~~~~~l~~~~~------------------~~~~~------   50 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKA-G-----NKIIIGSRDLEKAEEAAAKAL------------------EELGH------   50 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhC-C-----CEEEEEEcCHHHHHHHHHHHH------------------hhccc------
Confidence            7999997 899999999999999 8     999999999877654321110                  00110      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                                 .|+.        ..+.. ++..++++++|+||+|||++.+.++++++.+.+.    +++||+++||+..
T Consensus        51 -----------~g~~--------~~~~~-~~~~ea~~~aDvVilavp~~~~~~~l~~l~~~l~----~~vvI~~~ngi~~  106 (219)
T TIGR01915        51 -----------GGSD--------IKVTG-ADNAEAAKRADVVILAVPWDHVLKTLESLRDELS----GKLVISPVVPLAS  106 (219)
T ss_pred             -----------cCCC--------ceEEE-eChHHHHhcCCEEEEECCHHHHHHHHHHHHHhcc----CCEEEEeccCcee
Confidence                       0000        02233 3456778899999999999999999999987665    4789999999986


Q ss_pred             cc-c----CCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCc----eeEEEeCC-hhhHHHHHHHhCCC-CeEE
Q 019978          203 EL-E----AVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEY----ANARICGA-EKWRKPLAKFLRRP-HFTV  271 (333)
Q Consensus       203 ~~-~----~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~----~~~~~~~~-~~~~~~l~~ll~~~-~~~v  271 (333)
                      .. .    ..+.....++.+++.++..  .-.+...|+.+.++..+..    ..+.++++ ++..+.+.++.+.. ||+.
T Consensus       107 ~~~~~~~~~~~~~~s~~e~l~~~~p~~--~~VVka~~~~~a~~~~~~~~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~  184 (219)
T TIGR01915       107 DGGKGARYLPPEEGSAAEQAAALLPET--SRVVAAFHNLSAVLLQDVDDEVDCDVLVCGDDEEAKEVVAELAGRIDGLRA  184 (219)
T ss_pred             cCCCCceecCCCCCcHHHHHHHhCCCC--CeEeeccccCCHHHhcCCCCCCCCCEEEECCCHHHHHHHHHHHHhcCCCCc
Confidence            20 0    0111234568888888631  2346677888777665421    22345665 45677888888887 8987


Q ss_pred             EecCChh
Q 019978          272 WDNGDLV  278 (333)
Q Consensus       272 ~~s~Di~  278 (333)
                      .....+.
T Consensus       185 vd~G~l~  191 (219)
T TIGR01915       185 LDAGPLE  191 (219)
T ss_pred             ccCCchh
Confidence            6544433

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=99.45  E-value=4.8e-13  Score=106.05  Aligned_cols=94  Identities=27%  Similarity=0.321  Sum_probs=71.7

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEE-ecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~-~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ||+|||+|+||++|+..|.++ |. .+ ++|.++ +|++++++++..                         .       
T Consensus         1 kI~iIG~G~mg~al~~~l~~~-g~-~~-~~v~~~~~r~~~~~~~~~~-------------------------~-------   45 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLAS-GI-KP-HEVIIVSSRSPEKAAELAK-------------------------E-------   45 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHT-TS--G-GEEEEEEESSHHHHHHHHH-------------------------H-------
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CC-Cc-eeEEeeccCcHHHHHHHHH-------------------------h-------
Confidence            799999999999999999998 74 33 789966 999876543210                         0       


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEec-CHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVT-NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~-d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                        +                    .+.+.. +..++++.+|+||+|||++.+.++++++ +...+   ++.+||+++|
T Consensus        46 --~--------------------~~~~~~~~~~~~~~~advvilav~p~~~~~v~~~i-~~~~~---~~~vis~~ag   96 (96)
T PF03807_consen   46 --Y--------------------GVQATADDNEEAAQEADVVILAVKPQQLPEVLSEI-PHLLK---GKLVISIAAG   96 (96)
T ss_dssp             --C--------------------TTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHHHH-HHHHT---TSEEEEESTT
T ss_pred             --h--------------------ccccccCChHHhhccCCEEEEEECHHHHHHHHHHH-hhccC---CCEEEEeCCC
Confidence              0                    223333 6788899999999999999999999999 55555   7899999876

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.42  E-value=3.6e-12  Score=121.14  Aligned_cols=201  Identities=15%  Similarity=0.110  Sum_probs=124.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +.||+|||+|.||+++|..|+.+ |     ++|++|+++++.+++....     +.+....+++...... ....     
T Consensus         3 i~~I~ViGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~l~~~~~~-----i~~~~~~l~~~~~~g~-~~~~-----   65 (291)
T PRK06035          3 IKVIGVVGSGVMGQGIAQVFART-G-----YDVTIVDVSEEILKNAMEL-----IESGPYGLRNLVEKGK-MSED-----   65 (291)
T ss_pred             CcEEEEECccHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHHH-----HHhhhhhHHHHHHcCC-CCHH-----
Confidence            46899999999999999999999 8     9999999999876543211     1110000000000000 0000     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~--~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                        ..  ++             .+.++.++++. ++++++|+||+|+|++.  ..++++++.+++++   +++++|.++|+
T Consensus        66 --~~--~~-------------~~~~i~~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~---~~il~S~tsg~  124 (291)
T PRK06035         66 --EA--KA-------------IMARIRTSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSP---ETIIASNTSGI  124 (291)
T ss_pred             --HH--HH-------------HHhCcEeeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCC---CeEEEEcCCCC
Confidence              00  00             01256677777 46899999999999885  89999999998887   78888889887


Q ss_pred             cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE--eCChhhHHHHHHHhCCCCeEEEecCChh
Q 019978          201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGDLV  278 (333)
Q Consensus       201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~v~~s~Di~  278 (333)
                      ...            .+.+.+..+ ..+ +-..|..+..+...  ..++.  ..+++..+.+..++...+..+....|.-
T Consensus       125 ~~~------------~la~~~~~~-~r~-ig~hf~~P~~~~~~--vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~p  188 (291)
T PRK06035        125 MIA------------EIATALERK-DRF-IGMHWFNPAPVMKL--IEVVRAALTSEETFNTTVELSKKIGKIPIEVADVP  188 (291)
T ss_pred             CHH------------HHHhhcCCc-ccE-EEEecCCCcccCcc--EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCC
Confidence            754            245555432 111 22223332211111  11111  2256778888889988887777667877


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 019978          279 THEVMGGLKNVYAIGAGMV  297 (333)
Q Consensus       279 gve~~~alkNv~Ai~~Gi~  297 (333)
                      |--....+.|.+.-+.-++
T Consensus       189 gfv~nRl~~~~~~ea~~~~  207 (291)
T PRK06035        189 GFFTTRFIEGWLLEAIRSF  207 (291)
T ss_pred             CeeHHHHHHHHHHHHHHHH
Confidence            7666666666666555444

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.42  E-value=6.3e-12  Score=120.34  Aligned_cols=181  Identities=16%  Similarity=0.180  Sum_probs=116.8

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .++||+|||+|.||+++|..|+++ |     ++|++|+++++.+++++..     +....         +...+.     
T Consensus         3 ~~~~I~vIGaG~mG~~iA~~l~~~-g-----~~V~~~d~~~~~~~~~~~~-----~~~~~---------~~~~~~-----   57 (311)
T PRK06130          3 PIQNLAIIGAGTMGSGIAALFARK-G-----LQVVLIDVMEGALERARGV-----IERAL---------GVYAPL-----   57 (311)
T ss_pred             CccEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHHH-----HHHHH---------HHhhhc-----
Confidence            357999999999999999999998 8     9999999998876654321     00000         000000     


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~--~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                         ...              ...+.++.++++++++++++|+||+|||++.  ...+++++.+++++   +++|+|.+.|
T Consensus        58 ---~~~--------------~~~~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~---~~ii~s~tsg  117 (311)
T PRK06130         58 ---GIA--------------SAGMGRIRMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDP---DTIFATNTSG  117 (311)
T ss_pred             ---ccH--------------HHHhhceEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHHhCCC---CcEEEECCCC
Confidence               000              0000146777888888899999999999874  88899999988776   6777788888


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEe--CChhhHHHHHHHhCCCCeEEEe-cCC
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWD-NGD  276 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v~~-s~D  276 (333)
                      +...            .+++.++.+ .. .+...|+.+.....  ...++.+  .+++..+.+..+|+..+..+.. ..|
T Consensus       118 ~~~~------------~l~~~~~~~-~~-~ig~h~~~p~~~~~--l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d  181 (311)
T PRK06130        118 LPIT------------AIAQAVTRP-ER-FVGTHFFTPADVIP--LVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKD  181 (311)
T ss_pred             CCHH------------HHHhhcCCc-cc-EEEEccCCCCccCc--eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCC
Confidence            7643            255555432 11 23345555543222  1212222  2467889999999988876554 457


Q ss_pred             hhHHHHH
Q 019978          277 LVTHEVM  283 (333)
Q Consensus       277 i~gve~~  283 (333)
                      .-|.-+.
T Consensus       182 ~~G~i~n  188 (311)
T PRK06130        182 IPGFIAN  188 (311)
T ss_pred             CCCcHHH
Confidence            7665333

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.42  E-value=5.3e-12  Score=120.66  Aligned_cols=183  Identities=12%  Similarity=0.097  Sum_probs=113.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|.||+++|..|+++ |     ++|.+|+|++++++++..++                     ..        
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~-g-----~~V~~~dr~~~~~~~l~~~g---------------------~~--------   45 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKR-G-----HDCVGYDHDQDAVKAMKEDR---------------------TT--------   45 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHHcC---------------------Cc--------
Confidence            6899999999999999999999 8     99999999987654322100                     00        


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                                             ......++.+.+..+|+||+++|+..++++++++.+.+++   +++||.++++....
T Consensus        46 -----------------------~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~~~l~~---g~ivid~st~~~~~   99 (298)
T TIGR00872        46 -----------------------GVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELAPTLEK---GDIVIDGGNSYYKD   99 (298)
T ss_pred             -----------------------ccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHHhhCCC---CCEEEECCCCCccc
Confidence                                   0000122333456789999999999999999999998876   67888888776554


Q ss_pred             ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchH-HHhccCceeEEEeCChhhHHHHHHHhCCCCe---EEEecCChhH
Q 019978          204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIAS-EIYNKEYANARICGAEKWRKPLAKFLRRPHF---TVWDNGDLVT  279 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~-ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~---~v~~s~Di~g  279 (333)
                      +     .+ ..+.+++ .|     +.++..|.... ...+..+ ..+++++++..+.++.+|+..+-   .+.+..+.=.
T Consensus       100 t-----~~-~~~~~~~-~g-----~~~vda~vsGg~~~a~~G~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~  166 (298)
T TIGR00872       100 S-----LR-RYKLLKE-KG-----IHLLDCGTSGGVWGRERGY-CFMIGGDGEAFARAEPLFADVAPEEQGYLYCGPCGS  166 (298)
T ss_pred             H-----HH-HHHHHHh-cC-----CeEEecCCCCCHHHHhcCC-eeeeCCCHHHHHHHHHHHHHhcCcCCCEEEECCccH
Confidence            2     11 1111211 12     12233333211 1122223 34567777788888888775432   2344444433


Q ss_pred             HHHHHHHHHHH--HHHHHHHhcc
Q 019978          280 HEVMGGLKNVY--AIGAGMVAAL  300 (333)
Q Consensus       280 ve~~~alkNv~--Ai~~Gi~~gl  300 (333)
                      ....+.+.|.+  +..+.+++++
T Consensus       167 ~~~~K~~~n~l~~~~~~~~aE~~  189 (298)
T TIGR00872       167 GHFVKMVHNGIEYGMMAAIAEGF  189 (298)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777777752  3335555544

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.41  E-value=4.8e-12  Score=123.55  Aligned_cols=193  Identities=19%  Similarity=0.158  Sum_probs=134.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|+|+|++|...|.+|++. |     |+|+.+|.++++++.++         .+        +-|.|.|+++     
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~-G-----HeVv~vDid~~KV~~ln---------~g--------~~PI~EpgLe-----   52 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAEL-G-----HEVVCVDIDESKVELLN---------KG--------ISPIYEPGLE-----   52 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHc-C-----CeEEEEeCCHHHHHHHh---------CC--------CCCCcCccHH-----
Confidence            8999999999999999999999 8     99999999999887543         33        2477888765     


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------hhHHHHHHHHHhhhhccCCCCEE
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------TETKEVFEEISRYWKERITVPVI  193 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps----------~~~~~vl~~i~~~l~~~~~~~~I  193 (333)
                            |+|.++...       .++.+|+|.+++++++|++|+|||.          .++++++++|.+++++   .+ +
T Consensus        53 ------~ll~~~~~~-------gRl~fTtd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~---~~-v  115 (414)
T COG1004          53 ------ELLKENLAS-------GRLRFTTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDG---KA-V  115 (414)
T ss_pred             ------HHHHhcccc-------CcEEEEcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCC---Ce-E
Confidence                  344432211       2599999999999999999999975          2689999999998875   33 3


Q ss_pred             EEeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhcc----CceeEEEeC-ChhhHHHHHHHhCCC-
Q 019978          194 ISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNK----EYANARICG-AEKWRKPLAKFLRRP-  267 (333)
Q Consensus       194 vs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~----~~~~~~~~~-~~~~~~~l~~ll~~~-  267 (333)
                      |..-+.++++     +...+.+.+.+....  ..+.+.+-|.|-+|...-    .|.-++++. ++...+.+.+++... 
T Consensus       116 vV~KSTVPvG-----t~~~v~~~i~~~~~~--~~f~v~~NPEFLREG~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~  188 (414)
T COG1004         116 VVIKSTVPVG-----TTEEVRAKIREENSG--KDFEVASNPEFLREGSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFL  188 (414)
T ss_pred             EEEcCCCCCC-----chHHHHHHHHhhccc--CCceEecChHHhcCcchhhhccCCCeEEEccCChhHHHHHHHHHhhhh
Confidence            3333334444     344444444443322  257799999998876542    244455544 334577777777542 


Q ss_pred             --CeEEEecCChhHHHHHHHHHHH
Q 019978          268 --HFTVWDNGDLVTHEVMGGLKNV  289 (333)
Q Consensus       268 --~~~v~~s~Di~gve~~~alkNv  289 (333)
                        ..++ ...|+..+|+-+..-|.
T Consensus       189 ~~~~p~-l~t~~~~AE~IKyaaNa  211 (414)
T COG1004         189 RQDVPI-LFTDLREAELIKYAANA  211 (414)
T ss_pred             hcCCCE-EEecchHHHHHHHHHHH
Confidence              3333 57788888876655553

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.40  E-value=1.1e-12  Score=114.60  Aligned_cols=152  Identities=20%  Similarity=0.260  Sum_probs=98.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      ||||+|||.|.||+.||..|.++ |     ++|++|+|++++++++..                                
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~-g-----~~v~~~d~~~~~~~~~~~--------------------------------   42 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKA-G-----YEVTVYDRSPEKAEALAE--------------------------------   42 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHT-T-----TEEEEEESSHHHHHHHHH--------------------------------
T ss_pred             CCEEEEEchHHHHHHHHHHHHhc-C-----CeEEeeccchhhhhhhHH--------------------------------
Confidence            68999999999999999999999 8     999999999876543210                                


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-hhHHHHHHH--HHhhhhccCCCCEEEEeeec
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEE--ISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps-~~~~~vl~~--i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                             ......++++++++.+|+||+++|. ..+++++..  +.+.+.+   ++++|.++ .
T Consensus        43 -----------------------~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~---g~iiid~s-T   95 (163)
T PF03446_consen   43 -----------------------AGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENILAGLRP---GKIIIDMS-T   95 (163)
T ss_dssp             -----------------------TTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-T---TEEEEE-S-S
T ss_pred             -----------------------hhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHhhcccc---ceEEEecC-C
Confidence                                   0355678899999999999999998 679999999  8887776   67777654 2


Q ss_pred             CcccccCCccCCCHHHHHHhHh---CCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEE
Q 019978          200 VEAELEAVPRIITPTQMINRAT---GVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW  272 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~l---g~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~  272 (333)
                      +.+++         ++.+.+.+   |.......+..||.-+   ..+..+ .+++++++..++++.+|+..+-+++
T Consensus        96 ~~p~~---------~~~~~~~~~~~g~~~vdapV~Gg~~~a---~~g~l~-~~~gG~~~~~~~~~~~l~~~~~~v~  158 (163)
T PF03446_consen   96 ISPET---------SRELAERLAAKGVRYVDAPVSGGPPGA---EEGTLT-IMVGGDEEAFERVRPLLEAMGKNVY  158 (163)
T ss_dssp             --HHH---------HHHHHHHHHHTTEEEEEEEEESHHHHH---HHTTEE-EEEES-HHHHHHHHHHHHHHEEEEE
T ss_pred             cchhh---------hhhhhhhhhhccceeeeeeeecccccc---cccceE-EEccCCHHHHHHHHHHHHHHhCCce
Confidence            33321         12233333   2111112233444322   233223 4567888888899998886555554

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=99.40  E-value=1.2e-11  Score=123.49  Aligned_cols=192  Identities=14%  Similarity=-0.006  Sum_probs=120.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +|||+|||+|.||..+|..|++. |     |+|++|++++++++.++.         +.        -+.+.+++.    
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~-G-----~~V~~~D~~~~~v~~l~~---------g~--------~~~~e~~l~----   55 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASR-Q-----KQVIGVDINQHAVDTINR---------GE--------IHIVEPDLD----   55 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhC-C-----CEEEEEeCCHHHHHHHHC---------CC--------CCcCCCCHH----
Confidence            48999999999999999999999 8     999999999987765432         11        112222221    


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------hhHHHHHHHHHhhhhccCCCCE
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------TETKEVFEEISRYWKERITVPV  192 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps----------~~~~~vl~~i~~~l~~~~~~~~  192 (333)
                             |++.+....       ..+.++++.    ++||+||+|||.          ..+.++++.+.+++++   +++
T Consensus        56 -------~~l~~~~~~-------g~l~~~~~~----~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~---g~i  114 (415)
T PRK11064         56 -------MVVKTAVEG-------GYLRATTTP----EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKK---GDL  114 (415)
T ss_pred             -------HHHHHHhhc-------Cceeeeccc----ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCC---CCE
Confidence                   121111000       135555543    479999999997          5888899999998876   665


Q ss_pred             EEEeeecCcccccCCccCCCHHHHHHhHhCC--------CCCcEEEEcCCCchHHHhc----cCceeEEEeC-ChhhHHH
Q 019978          193 IISLAKGVEAELEAVPRIITPTQMINRATGV--------PIENILYLGGPNIASEIYN----KEYANARICG-AEKWRKP  259 (333)
Q Consensus       193 Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~--------~~~~~~vl~GP~~a~ev~~----~~~~~~~~~~-~~~~~~~  259 (333)
                      || ....+.+++     .+.+...+.+.-..        ....+.+...|.+..+...    ..+..+ +++ +++..++
T Consensus       115 VI-~~STv~pgt-----t~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~G~~~~~~~~~~~v-vgG~~~~~~~~  187 (415)
T PRK11064        115 VI-LESTSPVGA-----TEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLPGQVMVELIKNDRV-IGGMTPVCSAR  187 (415)
T ss_pred             EE-EeCCCCCCH-----HHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCCCChhhhhcCCCEE-EEeCCHHHHHH
Confidence            54 344555542     23333334332100        0123556778866543221    123333 344 6777888


Q ss_pred             HHHHhCCCCeEEEecCChhHHHHHHHHHHH
Q 019978          260 LAKFLRRPHFTVWDNGDLVTHEVMGGLKNV  289 (333)
Q Consensus       260 l~~ll~~~~~~v~~s~Di~gve~~~alkNv  289 (333)
                      ++.+|+.-.-.+....++...|..+..-|.
T Consensus       188 ~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~  217 (415)
T PRK11064        188 ASELYKIFLEGECVVTNSRTAEMCKLTENS  217 (415)
T ss_pred             HHHHHHHhcCCCeeeCCHHHHHHHHHHHHH
Confidence            888887654344456688888999888876

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=99.38  E-value=2.5e-11  Score=120.22  Aligned_cols=184  Identities=15%  Similarity=0.116  Sum_probs=116.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|.||..+|..++ . |     |+|++|+++++++++++.         +.        -+.+.+++.     
T Consensus         1 mkI~VIGlGyvGl~~A~~lA-~-G-----~~VigvD~d~~kv~~l~~---------g~--------~~~~e~~l~-----   51 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA-Q-N-----HEVVALDILPSRVAMLND---------RI--------SPIVDKEIQ-----   51 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH-h-C-----CcEEEEECCHHHHHHHHc---------CC--------CCCCCcCHH-----
Confidence            69999999999999998887 5 6     999999999988765432         11        112222221     


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-----------hHHHHHHHHHhhhhccCCCCE
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----------ETKEVFEEISRYWKERITVPV  192 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-----------~~~~vl~~i~~~l~~~~~~~~  192 (333)
                            |++.++         ..++..+++..+++.++|+||+|||..           +++++++.+.+ +++   +++
T Consensus        52 ------~~l~~~---------~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~---g~l  112 (388)
T PRK15057         52 ------QFLQSD---------KIHFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INP---YAV  112 (388)
T ss_pred             ------HHHHhC---------CCcEEEecchhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCC---CCE
Confidence                  111110         014666777778889999999999964           67888888877 554   555


Q ss_pred             EEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhc----cCceeEEEeCChhhHHHHHHHhCCCC
Q 019978          193 IISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLRRPH  268 (333)
Q Consensus       193 Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~----~~~~~~~~~~~~~~~~~l~~ll~~~~  268 (333)
                      || ....+++++     .    +.+.+.+..    ..+.+.|.++.+...    ..|..++++++++..+++.++|....
T Consensus       113 VV-~~STv~pgt-----t----~~l~~~~~~----~~v~~~PE~l~~G~a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~  178 (388)
T PRK15057        113 MV-IKSTVPVGF-----T----AAMHKKYRT----ENIIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGA  178 (388)
T ss_pred             EE-EeeecCCch-----H----HHHHHHhhc----CcEEECcccccCCcccccccCCCEEEEEcCcHHHHHHHHHHHhhh
Confidence            54 344455542     1    223333311    135568988865432    11334455666666777777775421


Q ss_pred             e--EEE-ecCChhHHHHHHHHHHH
Q 019978          269 F--TVW-DNGDLVTHEVMGGLKNV  289 (333)
Q Consensus       269 ~--~v~-~s~Di~gve~~~alkNv  289 (333)
                      +  .+. +..|+...|..+..-|.
T Consensus       179 ~~~~~~~~~~~~~~AE~~Kl~~N~  202 (388)
T PRK15057        179 IKQNIPTLFTDSTEAEAIKLFANT  202 (388)
T ss_pred             hcCCCceeeCCHHHHHHHHHHHHH
Confidence            1  222 46888889999988886

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.38  E-value=1.1e-11  Score=118.47  Aligned_cols=179  Identities=13%  Similarity=0.141  Sum_probs=116.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|.||..+|..|.+. |     ++|++|+|++++++++.         +                        
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~-g-----~~v~v~dr~~~~~~~~~---------~------------------------   41 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLRED-G-----HEVVGYDVNQEAVDVAG---------K------------------------   41 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHH---------H------------------------
Confidence            6899999999999999999999 8     89999999986544211         0                        


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCch-hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~---aDlIIlaVps~-~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                            .......+++++++.   +|+||+++|.. .++++++.+.+.+++   ++++|.++..
T Consensus        42 ----------------------~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i~~~l~~---g~ivid~st~   96 (299)
T PRK12490         42 ----------------------LGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDLYPLLSP---GDIVVDGGNS   96 (299)
T ss_pred             ----------------------CCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHHhccCCC---CCEEEECCCC
Confidence                                  012344567776655   69999999998 899999998887766   6788877643


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH--HhccCceeEEEeCChhhHHHHHHHhCCCCe---EEEec
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRPHF---TVWDN  274 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e--v~~~~~~~~~~~~~~~~~~~l~~ll~~~~~---~v~~s  274 (333)
                      -...      ...+.+.+.+ .+     +.++-.|.....  ...+.  .++++++++..++++.+|+..+-   +++..
T Consensus        97 ~~~~------~~~~~~~~~~-~g-----~~~vdapV~G~~~~a~~g~--~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~  162 (299)
T PRK12490         97 RYKD------DLRRAEELAE-RG-----IHYVDCGTSGGVWGLRNGY--CLMVGGDKEIYDRLEPVFKALAPEGPGYVHA  162 (299)
T ss_pred             Cchh------HHHHHHHHHH-cC-----CeEEeCCCCCCHHHHhcCC--eEEecCCHHHHHHHHHHHHHhcCcCCcEEEE
Confidence            3322      1112222221 12     223444444321  12342  34567888888888888887654   45555


Q ss_pred             CChhHHHHHHHHHHHHHH--HHHHHhcc
Q 019978          275 GDLVTHEVMGGLKNVYAI--GAGMVAAL  300 (333)
Q Consensus       275 ~Di~gve~~~alkNv~Ai--~~Gi~~gl  300 (333)
                      .++-.....+.+.|.+..  ..++.+++
T Consensus       163 G~~g~a~~~Kl~~n~~~~~~~~~~aEa~  190 (299)
T PRK12490        163 GPVGSGHFLKMVHNGIEYGMMQAYAEGL  190 (299)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665555677777776333  35555544

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.37  E-value=1.1e-11  Score=118.42  Aligned_cols=170  Identities=14%  Similarity=0.104  Sum_probs=109.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      +||+|||+|.||.++|..|+++ |     ++|++|+|++++++++...                                
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~-G-----~~V~v~d~~~~~~~~~~~~--------------------------------   43 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQ-G-----HQLQVFDVNPQAVDALVDK--------------------------------   43 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHHc--------------------------------
Confidence            5999999999999999999999 8     9999999998765432100                                


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHH---HHhhhhccCCCCEEEEeeec
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE---ISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~~---i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                             .....+++.++++++|+||+++|+. .+++++..   +.+.+++   ++++|.++.+
T Consensus        44 -----------------------g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~---g~lvid~sT~   97 (296)
T PRK15461         44 -----------------------GATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSR---DALVIDMSTI   97 (296)
T ss_pred             -----------------------CCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCC---CCEEEECCCC
Confidence                                   1223456777889999999999997 47878743   4444554   6777777655


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH--HhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCCh
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL  277 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e--v~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di  277 (333)
                      -+..          ++.+.+.+..  ..+.++-.|.....  ...+..+ ++.+++++..++++.+|+..+-++++..+.
T Consensus        98 ~p~~----------~~~l~~~l~~--~g~~~ldapV~g~~~~a~~g~l~-~~~gg~~~~~~~~~p~l~~~g~~~~~~g~~  164 (296)
T PRK15461         98 HPLQ----------TDKLIADMQA--KGFSMMDVPVGRTSDNAITGTLL-LLAGGTAEQVERATPILMAMGNELINAGGP  164 (296)
T ss_pred             CHHH----------HHHHHHHHHH--cCCcEEEccCCCCHHHHHhCcEE-EEECCCHHHHHHHHHHHHHHcCCeEeeCCC
Confidence            4432          1223222211  11123333433221  1233233 345677788889999998777677777776


Q ss_pred             hHHHHHHHHHHHH
Q 019978          278 VTHEVMGGLKNVY  290 (333)
Q Consensus       278 ~gve~~~alkNv~  290 (333)
                      =.....+...|.+
T Consensus       165 G~g~~~Kl~~N~~  177 (296)
T PRK15461        165 GMGIRVKLINNYM  177 (296)
T ss_pred             CHHHHHHHHHHHH
Confidence            4445666666653

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.36  E-value=1.6e-11  Score=116.19  Aligned_cols=180  Identities=17%  Similarity=0.157  Sum_probs=117.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhccc-ccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCA-YLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~-~l~~~~~~~  121 (333)
                      ++||+|||+|.||..+|..++.. |     ++|++|+++++.+++...     .+++.   ++++..... ......   
T Consensus         3 ~~kI~VIG~G~mG~~ia~~la~~-g-----~~V~~~d~~~~~~~~~~~-----~i~~~---l~~~~~~g~~~~~~~~---   65 (282)
T PRK05808          3 IQKIGVIGAGTMGNGIAQVCAVA-G-----YDVVMVDISDAAVDRGLA-----TITKS---LDRLVKKGKMTEADKE---   65 (282)
T ss_pred             ccEEEEEccCHHHHHHHHHHHHC-C-----CceEEEeCCHHHHHHHHH-----HHHHH---HHHHHHcCCCCHHHHH---
Confidence            46899999999999999999999 8     899999999987643211     11111   111111110 000000   


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~--~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                           ..+.++++++|.++ +++||+||+|+|++.  ..++++++.+++++   +++++|.+.|
T Consensus        66 ---------------------~~~~~l~~~~~~~~-~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~---~~il~s~ts~  120 (282)
T PRK05808         66 ---------------------AALARITGTTDLDD-LKDADLVIEAATENMDLKKKIFAQLDEIAKP---EAILATNTSS  120 (282)
T ss_pred             ---------------------HHHhCeEEeCCHHH-hccCCeeeecccccHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence                                 00125777888764 789999999999754  47999999999987   7888888888


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE--eCChhhHHHHHHHhCCCCeEEEecCCh
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGDL  277 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~v~~s~Di  277 (333)
                      +...            .+++.++.+.  -.+...|..+..+.... . ++.  ..+++..+.+..+|...|..+....|.
T Consensus       121 ~~~~------------~la~~~~~~~--r~ig~h~~~P~~~~~~v-e-v~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~  184 (282)
T PRK05808        121 LSIT------------ELAAATKRPD--KVIGMHFFNPVPVMKLV-E-IIRGLATSDATHEAVEALAKKIGKTPVEVKNA  184 (282)
T ss_pred             CCHH------------HHHHhhCCCc--ceEEeeccCCcccCccE-E-EeCCCCCCHHHHHHHHHHHHHcCCeeEEecCc
Confidence            7764            3566665432  23455666655443332 1 221  345678889999999888777655565


Q ss_pred             hHH
Q 019978          278 VTH  280 (333)
Q Consensus       278 ~gv  280 (333)
                      -|-
T Consensus       185 ~g~  187 (282)
T PRK05808        185 PGF  187 (282)
T ss_pred             cCh
Confidence            553

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.36  E-value=2.1e-11  Score=115.84  Aligned_cols=182  Identities=19%  Similarity=0.226  Sum_probs=108.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      ++||+|||+|.||+++|..|+.+ |     ++|++|+++++.+++++..     +...   +      ..+.+..     
T Consensus         3 ~~kIaViGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~l~~~~~~-----~~~~---~------~~~~~~~-----   57 (287)
T PRK08293          3 IKNVTVAGAGVLGSQIAFQTAFH-G-----FDVTIYDISDEALEKAKER-----IAKL---A------DRYVRDL-----   57 (287)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHHH-----HHHH---H------HHHHHcC-----
Confidence            47999999999999999999999 8     9999999998876654321     1000   0      0111100     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                        .+.+++     +.    +..+.++.+++|++++++++|+||+|+|++  ...++++++.+++++   +++|++.+.++
T Consensus        58 --~~~~~~-----~~----~~~~~~i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~---~~ii~sntSt~  123 (287)
T PRK08293         58 --EATKEA-----PA----EAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPE---KTIFATNSSTL  123 (287)
T ss_pred             --CCChhh-----hH----HHHHcCeEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCC---CCEEEECcccC
Confidence              000000     00    000126788899998899999999999976  689999999998876   67666655444


Q ss_pred             cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE--eCChhhHHHHHHHhCCCCeEEE-ecCCh
Q 019978          201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVW-DNGDL  277 (333)
Q Consensus       201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~v~-~s~Di  277 (333)
                      ..           ++ +.+.+..+ ..+.. ..|-.+  ........++.  ..+++..+.+..++...+.++. ...|.
T Consensus       124 ~~-----------~~-~~~~~~~~-~r~vg-~Hf~~p--~~~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~  187 (287)
T PRK08293        124 LP-----------SQ-FAEATGRP-EKFLA-LHFANE--IWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQ  187 (287)
T ss_pred             CH-----------HH-HHhhcCCc-ccEEE-EcCCCC--CCcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCC
Confidence            33           33 34444332 22211 122111  11111222222  2356678888888888776543 33454


Q ss_pred             hH
Q 019978          278 VT  279 (333)
Q Consensus       278 ~g  279 (333)
                      -|
T Consensus       188 pg  189 (287)
T PRK08293        188 PG  189 (287)
T ss_pred             CC
Confidence            44

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.36  E-value=6e-11  Score=114.90  Aligned_cols=196  Identities=19%  Similarity=0.220  Sum_probs=129.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ++|+|||+|+||.++|..|.+. |     ++|+++.++.....+.                         ...       
T Consensus        18 ktIgIIG~GsmG~AlA~~L~~s-G-----~~Vvv~~r~~~~s~~~-------------------------A~~-------   59 (330)
T PRK05479         18 KKVAIIGYGSQGHAHALNLRDS-G-----VDVVVGLREGSKSWKK-------------------------AEA-------   59 (330)
T ss_pred             CEEEEEeeHHHHHHHHHHHHHC-C-----CEEEEEECCchhhHHH-------------------------HHH-------
Confidence            6899999999999999999998 8     8999888775432110                         000       


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHH-HHHHhhhhccCCCCEEEEeeecCcc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVF-EEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                                .            .+.+ .+.+++++.||+|++++|+....+++ +++.+.+++   +++| +++.|+..
T Consensus        60 ----------~------------G~~~-~s~~eaa~~ADVVvLaVPd~~~~~V~~~~I~~~Lk~---g~iL-~~a~G~~i  112 (330)
T PRK05479         60 ----------D------------GFEV-LTVAEAAKWADVIMILLPDEVQAEVYEEEIEPNLKE---GAAL-AFAHGFNI  112 (330)
T ss_pred             ----------C------------CCee-CCHHHHHhcCCEEEEcCCHHHHHHHHHHHHHhcCCC---CCEE-EECCCCCh
Confidence                      0            1223 36788899999999999999889999 789988886   5655 88889887


Q ss_pred             cccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH-------HhccCceeEEEeCC--hhhHHHHHHHhCCCC-----
Q 019978          203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-------IYNKEYANARICGA--EKWRKPLAKFLRRPH-----  268 (333)
Q Consensus       203 ~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e-------v~~~~~~~~~~~~~--~~~~~~l~~ll~~~~-----  268 (333)
                      ..            .+...+. .. -+++..|+.+..       ++.|.++.+.+..+  .+..+.+..+|...|     
T Consensus       113 ~~------------~~~~p~~-~~-~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~~g  178 (330)
T PRK05479        113 HF------------GQIVPPA-DV-DVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTRAG  178 (330)
T ss_pred             hh------------ceeccCC-CC-cEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCccc
Confidence            52            2222332 12 246677998877       55666665433332  445666666666433     


Q ss_pred             -----eEEEecCChhHHH--HHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH
Q 019978          269 -----FTVWDNGDLVTHE--VMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM  322 (333)
Q Consensus       269 -----~~v~~s~Di~gve--~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l  322 (333)
                           |+-....|+.|.+  +||.+.-++..+.-.+-..+|.    .....-.+++|++.+
T Consensus       179 ~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~----pe~Ay~e~~~e~k~i  235 (330)
T PRK05479        179 VIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQ----PEMAYFECLHELKLI  235 (330)
T ss_pred             eeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHH
Confidence                 3333457888864  5666665666665555555551    223334567888665

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.36  E-value=1.5e-11  Score=116.74  Aligned_cols=171  Identities=15%  Similarity=0.123  Sum_probs=107.5

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR  124 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~  124 (333)
                      ||+|||+|.||..+|..|+++ |     ++|++|+|++++++++..                        .         
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~-G-----~~V~~~dr~~~~~~~~~~------------------------~---------   41 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKA-G-----YQLHVTTIGPEVADELLA------------------------A---------   41 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHH------------------------C---------
Confidence            699999999999999999999 8     999999999875543110                        0         


Q ss_pred             cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH---HHHHhhhhccCCCCEEEEeeecC
Q 019978          125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF---EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl---~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                            .....++.+++++++|+||+++|.. .++.++   +.+.+.+++   +++++.++.. 
T Consensus        42 ----------------------g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~---g~iivd~st~-   95 (291)
T TIGR01505        42 ----------------------GAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKP---GKTLVDMSSI-   95 (291)
T ss_pred             ----------------------CCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCC---CCEEEECCCC-
Confidence                                  1122356777889999999999975 566665   335555555   6777765533 


Q ss_pred             cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccC-ceeEEEeCChhhHHHHHHHhCCCCeEEEecCChhH
Q 019978          201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKE-YANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT  279 (333)
Q Consensus       201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~-~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di~g  279 (333)
                      .+.+         ++.+.+.+...  .+.++..|.+..+..... ...++++++++..+.++.+|+..+.+++.....-.
T Consensus        96 ~~~~---------~~~l~~~l~~~--g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g~~g~  164 (291)
T TIGR01505        96 SPIE---------SKRFAKAVKEK--GIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVGGNGD  164 (291)
T ss_pred             CHHH---------HHHHHHHHHHc--CCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeCCCCH
Confidence            3321         12233333211  122445665543322211 12234567777888899999887766665555444


Q ss_pred             HHHHHHHHHHHH
Q 019978          280 HEVMGGLKNVYA  291 (333)
Q Consensus       280 ve~~~alkNv~A  291 (333)
                      .+.++...|.+.
T Consensus       165 a~~~Kl~~n~~~  176 (291)
T TIGR01505       165 GQTCKVANQIIV  176 (291)
T ss_pred             HHHHHHHHHHHH
Confidence            566676666643

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.35  E-value=1.9e-11  Score=116.87  Aligned_cols=179  Identities=13%  Similarity=0.152  Sum_probs=115.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|.||+++|..|+++ |     ++|.+|+|++++++++..                                 
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~-g-----~~v~v~dr~~~~~~~~~~---------------------------------   41 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRG-G-----HEVVGYDRNPEAVEALAE---------------------------------   41 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHHHHH---------------------------------
Confidence            6899999999999999999999 8     999999999876542110                                 


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCch-hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~---aDlIIlaVps~-~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                            ..+.+.+++++.++.   +|+||+++|.. .++++++.+.+.+++   ++++|.++++
T Consensus        42 ----------------------~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l~~~l~~---g~ivid~st~   96 (301)
T PRK09599         42 ----------------------EGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDELAPLLSP---GDIVIDGGNS   96 (301)
T ss_pred             ----------------------CCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHHHhhCCC---CCEEEeCCCC
Confidence                                  023344566666654   69999999987 889999988888876   6788887765


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchH--HHhccCceeEEEeCChhhHHHHHHHhCCCCe----EEEe
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS--EIYNKEYANARICGAEKWRKPLAKFLRRPHF----TVWD  273 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~--ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~----~v~~  273 (333)
                      -....      ....+.+.+ .|     +.++-.|....  ....+ . .++++++++..++++.+|+..+-    ++++
T Consensus        97 ~~~~~------~~~~~~~~~-~g-----~~~~dapvsG~~~~a~~g-~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~  162 (301)
T PRK09599         97 YYKDD------IRRAELLAE-KG-----IHFVDVGTSGGVWGLERG-Y-CLMIGGDKEAVERLEPIFKALAPRAEDGYLH  162 (301)
T ss_pred             ChhHH------HHHHHHHHH-cC-----CEEEeCCCCcCHHHHhcC-C-eEEecCCHHHHHHHHHHHHHHcccccCCeEe
Confidence            44321      112222221 12     22333443322  12234 3 34567888888888888886654    4555


Q ss_pred             cCChhHHHHHHHHHHHH--HHHHHHHhcc
Q 019978          274 NGDLVTHEVMGGLKNVY--AIGAGMVAAL  300 (333)
Q Consensus       274 s~Di~gve~~~alkNv~--Ai~~Gi~~gl  300 (333)
                      ..+.=.....+.+.|.+  +...++++++
T Consensus       163 ~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~  191 (301)
T PRK09599        163 AGPVGAGHFVKMVHNGIEYGMMQAYAEGF  191 (301)
T ss_pred             ECCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56653346677777763  2234444443

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.35  E-value=1.5e-11  Score=116.73  Aligned_cols=183  Identities=18%  Similarity=0.206  Sum_probs=121.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      +||++||.|.||..||..|.++ |     |+|++|+|++++..+.        ...                        
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~a-G-----~~v~v~~r~~~ka~~~--------~~~------------------------   42 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKA-G-----HEVTVYNRTPEKAAEL--------LAA------------------------   42 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHC-C-----CEEEEEeCChhhhhHH--------HHH------------------------
Confidence            5899999999999999999999 8     9999999999763210        000                        


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH---HHHhhhhccCCCCEEEEeeec
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE---EISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~---~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                            .......++.+++..+|+||.++|.. ++++++-   .+...+++   ++++|.++ .
T Consensus        43 ----------------------~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~---G~i~IDmS-T   96 (286)
T COG2084          43 ----------------------AGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKP---GAIVIDMS-T   96 (286)
T ss_pred             ----------------------cCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCC---CCEEEECC-C
Confidence                                  02334566778899999999999965 7888884   46666666   77777765 3


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCChhH
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT  279 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di~g  279 (333)
                      +.++.     .+.+.+.+++ .|.......|..|+.-+.   .+..+ ++++++++..++++.+|+..+-+++...+.=.
T Consensus        97 isp~~-----a~~~a~~~~~-~G~~~lDAPVsGg~~~A~---~GtLt-imvGG~~~~f~r~~pvl~~~g~~i~~~G~~G~  166 (286)
T COG2084          97 ISPET-----ARELAAALAA-KGLEFLDAPVSGGVPGAA---AGTLT-IMVGGDAEAFERAKPVLEAMGKNIVHVGPVGA  166 (286)
T ss_pred             CCHHH-----HHHHHHHHHh-cCCcEEecCccCCchhhh---hCceE-EEeCCCHHHHHHHHHHHHHhcCceEEECCCCc
Confidence            44431     1222333322 232211112344443332   23222 35678889999999999999888887777733


Q ss_pred             HHHHHHHHHHHHH--HHHHHhcc
Q 019978          280 HEVMGGLKNVYAI--GAGMVAAL  300 (333)
Q Consensus       280 ve~~~alkNv~Ai--~~Gi~~gl  300 (333)
                      -+.++...|++..  ..++++++
T Consensus       167 G~~~Kl~nn~l~~~~~~a~aEAl  189 (286)
T COG2084         167 GQAAKLANNILLAGNIAALAEAL  189 (286)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Confidence            4778888887443  25555544

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.35  E-value=1.2e-11  Score=117.41  Aligned_cols=177  Identities=18%  Similarity=0.171  Sum_probs=115.8

Q ss_pred             EECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcCCccc
Q 019978           48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLH  127 (333)
Q Consensus        48 IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~  127 (333)
                      |||+|.||.++|..|+++ |     |+|++|+|++++++++..                                     
T Consensus         1 ~IGlG~mG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~l~~-------------------------------------   37 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKA-G-----HPVRVFDLFPDAVEEAVA-------------------------------------   37 (288)
T ss_pred             CCcccHhHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-------------------------------------
Confidence            689999999999999999 8     999999999876543210                                     


Q ss_pred             chhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-hhHHHHH---HHHHhhhhccCCCCEEEEeeecCccc
Q 019978          128 ADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps-~~~~~vl---~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                                        ..+..++++.++++++|+||++||+ ..+++++   +.+.+.+++   ++++|.++ ++.++
T Consensus        38 ------------------~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~~~---g~~vid~s-t~~p~   95 (288)
T TIGR01692        38 ------------------AGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKVAK---GSLLIDCS-TIDPD   95 (288)
T ss_pred             ------------------cCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcCCC---CCEEEECC-CCCHH
Confidence                              0233456788889999999999998 6688888   677777765   67777776 66665


Q ss_pred             ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHH--hccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCChhHHH
Q 019978          204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI--YNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE  281 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev--~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di~gve  281 (333)
                      +     .+.+++.+.+ .|.     .++-.|......  ..+..+ .+++++++..++++.+|+..+-++.+..+.-..+
T Consensus        96 ~-----~~~~~~~~~~-~g~-----~~vdaPv~Gg~~~a~~g~l~-~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g~g~  163 (288)
T TIGR01692        96 S-----ARKLAELAAA-HGA-----VFMDAPVSGGVGGARAGTLT-FMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQ  163 (288)
T ss_pred             H-----HHHHHHHHHH-cCC-----cEEECCCCCCHHHHhhCcEE-EEECCCHHHHHHHHHHHHHhcCCeEeeCCCCHHH
Confidence            2     2333343332 232     234444332211  123222 3456777788889999987766666665555556


Q ss_pred             HHHHHHHHHHH--HHHHHhccC
Q 019978          282 VMGGLKNVYAI--GAGMVAALT  301 (333)
Q Consensus       282 ~~~alkNv~Ai--~~Gi~~gl~  301 (333)
                      ..+...|.+..  ..++.+++.
T Consensus       164 ~~Kl~~n~~~~~~~~~~~Ea~~  185 (288)
T TIGR01692       164 AAKICNNMLLGISMIGTAEAMA  185 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            77777776322  234555443

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.34  E-value=2.6e-11  Score=115.27  Aligned_cols=170  Identities=18%  Similarity=0.210  Sum_probs=108.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +|||+|||+|.||..+|..|++. |     ++|.+|+|+++..+++.         +                       
T Consensus         2 ~~~IgviG~G~mG~~~a~~l~~~-g-----~~v~~~d~~~~~~~~~~---------~-----------------------   43 (296)
T PRK11559          2 TMKVGFIGLGIMGKPMSKNLLKA-G-----YSLVVYDRNPEAVAEVI---------A-----------------------   43 (296)
T ss_pred             CceEEEEccCHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHH---------H-----------------------
Confidence            37999999999999999999998 8     99999999986543210         0                       


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH---HHHHhhhhccCCCCEEEEeee
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF---EEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl---~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                             ..+...++++++++++|+||+++|.. .++.++   +.+.+.+++   +++++.++.
T Consensus        44 -----------------------~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~---g~iiid~st   97 (296)
T PRK11559         44 -----------------------AGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKP---GTVVIDMSS   97 (296)
T ss_pred             -----------------------CCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCC---CcEEEECCC
Confidence                                   02334567778888999999999954 566665   446666665   677776653


Q ss_pred             cCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHH--hccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCC
Q 019978          199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI--YNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD  276 (333)
Q Consensus       199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev--~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~D  276 (333)
                      . .+.+         ++.+.+.+...  ...++..|.+....  ..+... ++++++++..+.++.+|...+.++....+
T Consensus        98 ~-~~~~---------~~~l~~~~~~~--g~~~~d~pv~g~~~~a~~g~l~-i~~gg~~~~~~~~~~~l~~~~~~~~~~g~  164 (296)
T PRK11559         98 I-APLA---------SREIAAALKAK--GIEMLDAPVSGGEPKAIDGTLS-VMVGGDKAIFDKYYDLMKAMAGSVVHTGD  164 (296)
T ss_pred             C-CHHH---------HHHHHHHHHHc--CCcEEEcCCCCCHHHHhhCcEE-EEECCCHHHHHHHHHHHHHhcCCeEEeCC
Confidence            3 2221         12233333211  12244455443221  123222 34566777888899998877666665556


Q ss_pred             hhHHHHHHHHHHH
Q 019978          277 LVTHEVMGGLKNV  289 (333)
Q Consensus       277 i~gve~~~alkNv  289 (333)
                      .-..+..+...|.
T Consensus       165 ~g~a~~~Kl~~n~  177 (296)
T PRK11559        165 IGAGNVTKLANQV  177 (296)
T ss_pred             cCHHHHHHHHHHH
Confidence            5555777777775

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=99.34  E-value=9.1e-12  Score=111.48  Aligned_cols=168  Identities=18%  Similarity=0.219  Sum_probs=97.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|.+|..+|..||+. |     |+|+.||.++++++.++         ++.        -|.+.+++      
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~-G-----~~V~g~D~~~~~v~~l~---------~g~--------~p~~E~~l------   51 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEK-G-----HQVIGVDIDEEKVEALN---------NGE--------LPIYEPGL------   51 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHT-T-----SEEEEE-S-HHHHHHHH---------TTS--------SSS-CTTH------
T ss_pred             CEEEEECCCcchHHHHHHHHhC-C-----CEEEEEeCChHHHHHHh---------hcc--------ccccccch------
Confidence            8999999999999999999999 8     99999999998876543         321        22333332      


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------hHHHHHHHHHhhhhccCCCCEE
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI  193 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~----------~~~~vl~~i~~~l~~~~~~~~I  193 (333)
                           +|++.+...-       .++.+++|.++++.++|++|+|||..          ++.+++++|.+.+.+   ++ +
T Consensus        52 -----~~ll~~~~~~-------~~l~~t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~---~~-l  115 (185)
T PF03721_consen   52 -----DELLKENVSA-------GRLRATTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRP---GD-L  115 (185)
T ss_dssp             -----HHHHHHHHHT-------TSEEEESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCS---CE-E
T ss_pred             -----hhhhcccccc-------ccchhhhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhh---cc-e
Confidence                 2344443211       27899999999999999999999852          589999999999886   44 4


Q ss_pred             EEeeecCcccccCCccCC-CHHHHHHhHhCCCCCcEEEEcCCCchHHHhc----cCceeEEEeCChh-hHHHHHH
Q 019978          194 ISLAKGVEAELEAVPRII-TPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGAEK-WRKPLAK  262 (333)
Q Consensus       194 vs~~kGi~~~~~~~~~~~-~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~----~~~~~~~~~~~~~-~~~~l~~  262 (333)
                      |.+-..+.+++     .+ ....++++.-+.. ..+.+.+-|.+..+...    ..+..++.+.+++ ..+.+++
T Consensus       116 vV~~STvppGt-----t~~~~~~ile~~~~~~-~~f~la~~PErl~~G~a~~d~~~~~rvV~G~~~~~~~~~~~~  184 (185)
T PF03721_consen  116 VVIESTVPPGT-----TEELLKPILEKRSGKK-EDFHLAYSPERLREGRAIEDFRNPPRVVGGCDDESAEERLKE  184 (185)
T ss_dssp             EEESSSSSTTH-----HHHHHHHHHHHHCCTT-TCEEEEE------TTSHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred             EEEccEEEEee-----ehHhhhhhhhhhcccc-cCCeEEECCCccCCCCcchhccCCCEEEEeCCcHHHHHHHhc
Confidence            44555666653     22 3334444433322 45777788888664321    1234444443333 3435554

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.33  E-value=2e-11  Score=123.68  Aligned_cols=186  Identities=15%  Similarity=0.083  Sum_probs=121.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +.+|+|||+|.||++||..|+++ |     |+|++|+|++++++++....        .        +    ++      
T Consensus         1 ~~~IgvIGLG~MG~~lA~nL~~~-G-----~~V~v~dr~~~~~~~l~~~~--------~--------~----~g------   48 (470)
T PTZ00142          1 MSDIGLIGLAVMGQNLALNIASR-G-----FKISVYNRTYEKTEEFVKKA--------K--------E----GN------   48 (470)
T ss_pred             CCEEEEEeEhHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHHhh--------h--------h----cC------
Confidence            35899999999999999999999 8     99999999998765432110        0        0    00      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc---CCCEEEEecC-chhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW---DADIVINGLP-STETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~---~aDlIIlaVp-s~~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                             ..+..++++++++.   ++|+||+++| +..++++++++.+++.+   +.+||.+++
T Consensus        49 -----------------------~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~---g~iIID~gn  102 (470)
T PTZ00142         49 -----------------------TRVKGYHTLEELVNSLKKPRKVILLIKAGEAVDETIDNLLPLLEK---GDIIIDGGN  102 (470)
T ss_pred             -----------------------CcceecCCHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHhhCCC---CCEEEECCC
Confidence                                   02445677888775   5898888865 56899999999999987   789999998


Q ss_pred             cCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchH-HHhccCceeEEEeCChhhHHHHHHHhCCCCeE------E
Q 019978          199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS-EIYNKEYANARICGAEKWRKPLAKFLRRPHFT------V  271 (333)
Q Consensus       199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~-ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~------v  271 (333)
                      +....+     .++..+ +.+ .|     +.++..|.... +.++..+ ..+++++++..++++.+|+..+-+      +
T Consensus       103 ~~~~dt-----~~r~~~-l~~-~G-----i~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~piL~~ia~~~~~~~~~  169 (470)
T PTZ00142        103 EWYLNT-----ERRIKR-CEE-KG-----ILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILEKCSAKVGDSPCV  169 (470)
T ss_pred             CCHHHH-----HHHHHH-HHH-cC-----CeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhcCCCCeE
Confidence            877653     111111 111 12     22444444432 2233334 457788888888888888875444      3


Q ss_pred             EecCChhHH-HHHHHHHHH--HHHHHHHHhcc
Q 019978          272 WDNGDLVTH-EVMGGLKNV--YAIGAGMVAAL  300 (333)
Q Consensus       272 ~~s~Di~gv-e~~~alkNv--~Ai~~Gi~~gl  300 (333)
                      .+..+. |. ...+..-|.  |+....+++++
T Consensus       170 ~~~G~~-GaGh~vKmvhN~ie~~~m~~iaEa~  200 (470)
T PTZ00142        170 TYVGPG-SSGHYVKMVHNGIEYGDMQLISESY  200 (470)
T ss_pred             EEECCC-CHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            333343 43 456677775  34445555554

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=99.33  E-value=8.4e-11  Score=119.97  Aligned_cols=177  Identities=18%  Similarity=0.207  Sum_probs=117.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      .|||+|||+|.||+++|..|+++ |     ++|++|+++++.++++..     .+...       ..+..++...     
T Consensus         4 i~kIavIG~G~MG~~iA~~la~~-G-----~~V~v~D~~~~~~~~~~~-----~~~~~-------~~~~~~l~~~-----   60 (495)
T PRK07531          4 IMKAACIGGGVIGGGWAARFLLA-G-----IDVAVFDPHPEAERIIGE-----VLANA-------ERAYAMLTDA-----   60 (495)
T ss_pred             cCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-----HHHHH-------HHHHhhhccc-----
Confidence            47999999999999999999999 8     999999999987654321     11100       0000111110     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~--~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                        .+.                ...++.+++++++++++||+||+++|++.  .+.++.++.+++++   +++|.|.+.|+
T Consensus        61 --~~~----------------~~g~i~~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~---~~iI~SsTsgi  119 (495)
T PRK07531         61 --PLP----------------PEGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARP---DALIGSSTSGF  119 (495)
T ss_pred             --hhh----------------hhhceEeeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence              000                00146788899889999999999999984  77788888888776   67888888887


Q ss_pred             cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeC---ChhhHHHHHHHhCCCCeEEEec-CC
Q 019978          201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG---AEKWRKPLAKFLRRPHFTVWDN-GD  276 (333)
Q Consensus       201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~---~~~~~~~l~~ll~~~~~~v~~s-~D  276 (333)
                      ...           + +.+.+..+  ...++..|..+....   +...++.+   +++..+.++.+|+..+-.+... .|
T Consensus       120 ~~s-----------~-l~~~~~~~--~r~~~~hP~nP~~~~---~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k~  182 (495)
T PRK07531        120 LPS-----------D-LQEGMTHP--ERLFVAHPYNPVYLL---PLVELVGGGKTSPETIRRAKEILREIGMKPVHIAKE  182 (495)
T ss_pred             CHH-----------H-HHhhcCCc--ceEEEEecCCCcccC---ceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEeecCC
Confidence            754           2 45555432  234667776654222   22223333   3578899999999887666544 45


Q ss_pred             hhHH
Q 019978          277 LVTH  280 (333)
Q Consensus       277 i~gv  280 (333)
                      +-|.
T Consensus       183 ~~gf  186 (495)
T PRK07531        183 IDAF  186 (495)
T ss_pred             Ccch
Confidence            5553

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.33  E-value=6e-11  Score=118.89  Aligned_cols=194  Identities=10%  Similarity=0.089  Sum_probs=120.6

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .++|||+|||.|+||..+|..|++.       |+|+.||+++++++.++         .+.        .+.+.+.+   
T Consensus         4 ~~~mkI~vIGlGyvGlpmA~~la~~-------~~V~g~D~~~~~ve~l~---------~G~--------~~~~e~~~---   56 (425)
T PRK15182          4 IDEVKIAIIGLGYVGLPLAVEFGKS-------RQVVGFDVNKKRILELK---------NGV--------DVNLETTE---   56 (425)
T ss_pred             CCCCeEEEECcCcchHHHHHHHhcC-------CEEEEEeCCHHHHHHHH---------CcC--------CCCCCCCH---
Confidence            4569999999999999999998764       89999999998877644         111        11122211   


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------hHHHHHHHHHhhhhccCCC
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITV  190 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~----------~~~~vl~~i~~~l~~~~~~  190 (333)
                              +|+...           ..+.++++.+ ++++||++|+|||..          ++....+.|.+++++   +
T Consensus        57 --------~~l~~~-----------g~l~~t~~~~-~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~---g  113 (425)
T PRK15182         57 --------EELREA-----------RYLKFTSEIE-KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNR---G  113 (425)
T ss_pred             --------HHHHhh-----------CCeeEEeCHH-HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCC---C
Confidence                    112111           1466777775 588999999999853          566666788888876   5


Q ss_pred             CEEEEeeecCcccccCCccCCCHHHHHHhHhCCC-CCcEEEEcCCCchHHHhccC----ceeEEEeCChhhHHHHHHHhC
Q 019978          191 PVIISLAKGVEAELEAVPRIITPTQMINRATGVP-IENILYLGGPNIASEIYNKE----YANARICGAEKWRKPLAKFLR  265 (333)
Q Consensus       191 ~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~-~~~~~vl~GP~~a~ev~~~~----~~~~~~~~~~~~~~~l~~ll~  265 (333)
                      ++|| ..+.+.+++    +.+.....+++..|.. ...+.+.+-|.+..+.....    +..++.+.++...+.++.++.
T Consensus       114 ~lVI-~~STv~pgt----t~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~  188 (425)
T PRK15182        114 DIVV-YESTVYPGC----TEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRLTNIKKITSGSTAQIAELIDEVYQ  188 (425)
T ss_pred             CEEE-EecCCCCcc----hHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccccCCCeEEECCCHHHHHHHHHHHH
Confidence            5554 444566653    1112233344322321 12355666777765543221    233344555556677777776


Q ss_pred             CCC-eEEEecCChhHHHHHHHHHHH
Q 019978          266 RPH-FTVWDNGDLVTHEVMGGLKNV  289 (333)
Q Consensus       266 ~~~-~~v~~s~Di~gve~~~alkNv  289 (333)
                      ... ...+...++...|..|.+-|.
T Consensus       189 ~~~~~~~~~~~~~~~AE~~Kl~~N~  213 (425)
T PRK15182        189 QIISAGTYKAESIKVAEAAKVIENT  213 (425)
T ss_pred             HHhhcCcEEecCHHHHHHHHHHHHH
Confidence            532 224567788889999988886

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.32  E-value=6.1e-11  Score=114.39  Aligned_cols=163  Identities=20%  Similarity=0.199  Sum_probs=114.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc-chhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +||+|||+|+||.++|..|.+. |     ++|+++.++.. ..+++                          ..      
T Consensus         4 kkIgiIG~G~mG~AiA~~L~~s-G-----~~Viv~~~~~~~~~~~a--------------------------~~------   45 (314)
T TIGR00465         4 KTVAIIGYGSQGHAQALNLRDS-G-----LNVIVGLRKGGASWKKA--------------------------TE------   45 (314)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHC-C-----CeEEEEECcChhhHHHH--------------------------HH------
Confidence            7899999999999999999998 8     78877666542 21110                          00      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                 .            .+.+. +..++++++|+|++++|++ +...+++++.+.+++   + .+||++.|+.
T Consensus        46 -----------~------------Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~~ei~~~l~~---g-~iVs~aaG~~   97 (314)
T TIGR00465        46 -----------D------------GFKVG-TVEEAIPQADLIMNLLPDEVQHEVYEAEIQPLLKE---G-KTLGFSHGFN   97 (314)
T ss_pred             -----------C------------CCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHHHHHHhhCCC---C-cEEEEeCCcc
Confidence                       0            23333 4677889999999999999 777778889888875   4 4899999999


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH-H------hccCceeEEEe--CChhhHHHHHHHhCCCCeE--
Q 019978          202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-I------YNKEYANARIC--GAEKWRKPLAKFLRRPHFT--  270 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e-v------~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~--  270 (333)
                      ...            ++..+|.  ..-.++.+|+.+.. +      +.|.++.+.+.  .+.+..+.+..+|...|..  
T Consensus        98 i~~------------~~~~~~~--~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~~~  163 (314)
T TIGR00465        98 IHF------------VQIVPPK--DVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAIGGGRA  163 (314)
T ss_pred             Hhh------------ccccCCC--CCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCcc
Confidence            752            4444542  22358899999998 4      77766654332  2345667777888776554  


Q ss_pred             -----E---EecCChhHHH--HHHHH
Q 019978          271 -----V---WDNGDLVTHE--VMGGL  286 (333)
Q Consensus       271 -----v---~~s~Di~gve--~~~al  286 (333)
                           .   ++.+|..+..  +||..
T Consensus       164 ~~~~t~f~~e~~edl~~~~t~l~Gs~  189 (314)
T TIGR00465       164 GVLETTFKEETESDLFGEQAVLCGGL  189 (314)
T ss_pred             ceeechhHhhhhHHhcCcchhHHhHH
Confidence                 2   5667777754  56543

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1

Probab=99.32  E-value=1.3e-12  Score=113.19  Aligned_cols=55  Identities=31%  Similarity=0.487  Sum_probs=51.8

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCCC
Q 019978          275 GDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSWQ  330 (333)
Q Consensus       275 ~Di~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~~  330 (333)
                      +|++|+|+|++|||||||++||++|+++ |+|+++++++++++||..+ +++|++..
T Consensus         1 ~Dv~GvEl~galKNi~Aia~Gi~~g~~~-g~N~~aal~t~g~~Em~~l~~~~gg~~~   56 (149)
T PF07479_consen    1 SDVVGVELCGALKNIYAIAAGIADGLGL-GDNTKAALITRGLAEMSRLAKALGGDPE   56 (149)
T ss_dssp             S-HHHHHHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHHHTSSCC
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            6999999999999999999999999998 6999999999999999999 99999865

1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B ....

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.32  E-value=7.3e-11  Score=112.17  Aligned_cols=180  Identities=16%  Similarity=0.181  Sum_probs=110.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      .+||+|||+|.||+++|..|+.+ |     ++|++|+++++.++++..     .+...   +.++.... .++..     
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~~~~~~~-----~i~~~---~~~~~~~g-~~~~~-----   63 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALA-G-----YDVLLNDVSADRLEAGLA-----TINGN---LARQVAKG-KISEE-----   63 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHH-----HHHHH---HHHHHHcC-CCCHH-----
Confidence            46899999999999999999999 8     999999999887654221     11110   00000000 01100     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                        ..               +..+.+++++++++ ++.+||+||+|+|+.  ..+.+++++.+++++   +++++|.+.++
T Consensus        64 --~~---------------~~~~~~i~~~~~~~-~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~---~~ii~s~ts~~  122 (292)
T PRK07530         64 --AR---------------AAALARISTATDLE-DLADCDLVIEAATEDETVKRKIFAQLCPVLKP---EAILATNTSSI  122 (292)
T ss_pred             --HH---------------HHHHhCeEeeCCHH-HhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence              00               00012577778885 478999999999985  578889999998887   78888877776


Q ss_pred             cccccCCccCCCHHHHHHhHhCCCCCcEEE-EcCCCchHHHhccCceeEEE--eCChhhHHHHHHHhCCCCeEEEecCCh
Q 019978          201 EAELEAVPRIITPTQMINRATGVPIENILY-LGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGDL  277 (333)
Q Consensus       201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~v-l~GP~~a~ev~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~v~~s~Di  277 (333)
                      ...           + +++.+..+..-+.+ ..-|....   ..  ..++.  ..+++..+.+..+|...+..+.+..|.
T Consensus       123 ~~s-----------~-la~~~~~~~r~~g~h~~~p~~~~---~~--vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~  185 (292)
T PRK07530        123 SIT-----------R-LASATDRPERFIGIHFMNPVPVM---KL--VELIRGIATDEATFEAAKEFVTKLGKTITVAEDF  185 (292)
T ss_pred             CHH-----------H-HHhhcCCcccEEEeeccCCcccC---ce--EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCc
Confidence            643           2 44444322111111 11222211   11  11121  356778899999999888777766775


Q ss_pred             hHH
Q 019978          278 VTH  280 (333)
Q Consensus       278 ~gv  280 (333)
                      -|-
T Consensus       186 pg~  188 (292)
T PRK07530        186 PAF  188 (292)
T ss_pred             CCh
Confidence            553

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=99.31  E-value=8.2e-11  Score=119.26  Aligned_cols=197  Identities=17%  Similarity=0.115  Sum_probs=127.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +|||+|||+|++|..+|..|++. |   .+++|+.|+.+++++++++...+                 +.+.+++     
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~-g---~g~~V~gvD~~~~~v~~l~~g~~-----------------~~~e~gl-----   54 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALK-C---PDIEVVVVDISVPRIDAWNSDQL-----------------PIYEPGL-----   54 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc-C---CCCeEEEEECCHHHHHHHHcCCC-----------------ccCCCCH-----
Confidence            58999999999999999999987 5   12679999999998876553221                 1122222     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC--ch-------------hHHHHHHHHHhhhhcc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--ST-------------ETKEVFEEISRYWKER  187 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVp--s~-------------~~~~vl~~i~~~l~~~  187 (333)
                            +|++.++..        .++.++++..+++.+||++|+|||  ..             ++.+++++|.+++++ 
T Consensus        55 ------~ell~~~~~--------~~l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~-  119 (473)
T PLN02353         55 ------DEVVKQCRG--------KNLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKS-  119 (473)
T ss_pred             ------HHHHHHhhc--------CCEEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCC-
Confidence                  233332110        258899999888999999999985  31             689999999999876 


Q ss_pred             CCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhcc----CceeEEEeC-Ch----hhHH
Q 019978          188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNK----EYANARICG-AE----KWRK  258 (333)
Q Consensus       188 ~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~----~~~~~~~~~-~~----~~~~  258 (333)
                        +++|| .-..+++++     .+.+...+.+...  ...+.+.+-|.+..+...-    .+..+++++ ++    +..+
T Consensus       120 --~~lVv-~~STvp~Gt-----t~~~~~~l~~~~~--g~~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~  189 (473)
T PLN02353        120 --DKIVV-EKSTVPVKT-----AEAIEKILTHNSK--GINFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQ  189 (473)
T ss_pred             --CcEEE-EeCCCCCCh-----HHHHHHHHHhhCC--CCCeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHH
Confidence              55443 343455542     2333333433211  1346788899887654321    133344443 22    2467


Q ss_pred             HHHHHhCCCC-eEEEecCChhHHHHHHHHHHHH
Q 019978          259 PLAKFLRRPH-FTVWDNGDLVTHEVMGGLKNVY  290 (333)
Q Consensus       259 ~l~~ll~~~~-~~v~~s~Di~gve~~~alkNv~  290 (333)
                      .+++++...- -......++..+|+++..-|.+
T Consensus       190 ~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~  222 (473)
T PLN02353        190 ALKDVYAHWVPEERIITTNLWSAELSKLAANAF  222 (473)
T ss_pred             HHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHH
Confidence            7777776432 1345679999999999988863

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.30  E-value=1.3e-11  Score=109.99  Aligned_cols=173  Identities=24%  Similarity=0.341  Sum_probs=103.1

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR  124 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~  124 (333)
                      ||+|||+|.||..+|..++.+ |     ++|++|+++++.+++... .    +...   +++..+.. .+...       
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~----i~~~---l~~~~~~~-~~~~~-------   58 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARA-G-----YEVTLYDRSPEALERARK-R----IERL---LDRLVRKG-RLSQE-------   58 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHT-T-----SEEEEE-SSHHHHHHHHH-H----HHHH---HHHHHHTT-TTTHH-------
T ss_pred             CEEEEcCCHHHHHHHHHHHhC-C-----CcEEEEECChHHHHhhhh-H----HHHH---Hhhhhhhc-cchhh-------
Confidence            799999999999999999999 8     999999999987665332 1    1111   11111111 11100       


Q ss_pred             cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                      .  ++             ..+.++.+++|++++. +||+||.|+|..  ..++++.++..++++   ++++.|.+.++..
T Consensus        59 ~--~~-------------~~~~~i~~~~dl~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~---~~ilasnTSsl~i  119 (180)
T PF02737_consen   59 E--AD-------------AALARISFTTDLEEAV-DADLVIEAIPEDLELKQELFAELDEICPP---DTILASNTSSLSI  119 (180)
T ss_dssp             H--HH-------------HHHHTEEEESSGGGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-T---TSEEEE--SSS-H
T ss_pred             h--hh-------------hhhhhcccccCHHHHh-hhheehhhccccHHHHHHHHHHHHHHhCC---CceEEecCCCCCH
Confidence            0  00             0113789999999877 999999999986  689999999999988   8999888888776


Q ss_pred             cccCCccCCCHHHHHHhHhCCCCCcEEEE--cCCCchHHHhccCceeEEEe--CChhhHHHHHHHhCCCCeEEEecCC
Q 019978          203 ELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD  276 (333)
Q Consensus       203 ~~~~~~~~~~~se~i~~~lg~~~~~~~vl--~GP~~a~ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v~~s~D  276 (333)
                      .           + +.+.++.+ ..+..+  ..|.+...     ...++.+  .+++.++.+..++...|..+....|
T Consensus       120 ~-----------~-la~~~~~p-~R~ig~Hf~~P~~~~~-----lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v~D  179 (180)
T PF02737_consen  120 S-----------E-LAAALSRP-ERFIGMHFFNPPHLMP-----LVEVVPGPKTSPETVDRVRALLRSLGKTPVVVKD  179 (180)
T ss_dssp             H-----------H-HHTTSSTG-GGEEEEEE-SSTTT-------EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred             H-----------H-HHhccCcC-ceEEEEecccccccCc-----eEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence            4           2 44545433 222211  23433211     1112222  2456788888888887777665554

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.30  E-value=2.1e-10  Score=108.90  Aligned_cols=177  Identities=19%  Similarity=0.185  Sum_probs=110.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      +||+|||+|.||..+|..|+++ |     ++|++|+++++.++++... +........       ... .+...      
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~-G-----~~V~~~d~~~~~~~~~~~~-~~~~~~~~~-------~~g-~~~~~------   60 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVS-G-----FQTTLVDIKQEQLESAQQE-IASIFEQGV-------ARG-KLTEA------   60 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhC-C-----CcEEEEeCCHHHHHHHHHH-HHHHHHHHH-------HcC-CCCHH------
Confidence            5899999999999999999999 8     9999999999877664422 111111100       000 00000      


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~--~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                       ..               +..+.++..++++++++++||+||+|+|...  ...++.++.+++++   ++++++.+..+.
T Consensus        61 -~~---------------~~~~~~i~~~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~---~~il~~~tSt~~  121 (288)
T PRK09260         61 -AR---------------QAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPA---ECYIATNTSTMS  121 (288)
T ss_pred             -HH---------------HHHHhCeEEeCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCCC
Confidence             00               0001257788899888999999999999875  66788888888876   676666665555


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCC--cEEEEcCCCchHHHhccCceeEEEeC---ChhhHHHHHHHhCCCCeEEEecCC
Q 019978          202 AELEAVPRIITPTQMINRATGVPIE--NILYLGGPNIASEIYNKEYANARICG---AEKWRKPLAKFLRRPHFTVWDNGD  276 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~--~~~vl~GP~~a~ev~~~~~~~~~~~~---~~~~~~~l~~ll~~~~~~v~~s~D  276 (333)
                      +.           + +.+.+..+..  ...++ .|...      .+-..++.+   +++..+.++.+|...+-.+....|
T Consensus       122 ~~-----------~-l~~~~~~~~r~~g~h~~-~Pv~~------~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d  182 (288)
T PRK09260        122 PT-----------E-IASFTKRPERVIAMHFF-NPVHK------MKLVELIRGLETSDETVQVAKEVAEQMGKETVVVNE  182 (288)
T ss_pred             HH-----------H-HHhhcCCcccEEEEecC-CCccc------CceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence            43           2 4444432211  11122 34322      122223333   667889999999988877666667


Q ss_pred             hhH
Q 019978          277 LVT  279 (333)
Q Consensus       277 i~g  279 (333)
                      .-|
T Consensus       183 ~~G  185 (288)
T PRK09260        183 FPG  185 (288)
T ss_pred             ccc
Confidence            555

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.29  E-value=2.8e-10  Score=108.39  Aligned_cols=182  Identities=20%  Similarity=0.232  Sum_probs=111.1

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .++||+|||+|.||.++|..|+.. |     ++|++|+++++.+++... .    +...   ++++.......+.     
T Consensus         3 ~~~~V~vIG~G~mG~~iA~~l~~~-G-----~~V~~~d~~~~~~~~~~~-~----~~~~---~~~~~~~g~~~~~-----   63 (295)
T PLN02545          3 EIKKVGVVGAGQMGSGIAQLAAAA-G-----MDVWLLDSDPAALSRGLD-S----ISSS---LARLVKKGKMSQE-----   63 (295)
T ss_pred             CcCEEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHH-H----HHHH---HHHHHHcCCCCHH-----
Confidence            356899999999999999999999 8     999999999876653211 1    1110   0111101000000     


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC--chhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--STETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVp--s~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                         ..               +..+..+.++++.+ ++++||+||+|+|  ......+++++.+++++   +++|+|.+.|
T Consensus        64 ---~~---------------~~~~~~~~~~~~~~-~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~---~~il~s~tS~  121 (295)
T PLN02545         64 ---EA---------------DATLGRIRCTTNLE-ELRDADFIIEAIVESEDLKKKLFSELDRICKP---SAILASNTSS  121 (295)
T ss_pred             ---HH---------------HHHHhceEeeCCHH-HhCCCCEEEEcCccCHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence               00               00001355666764 5799999999999  66788999999988887   6778788888


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE--eCChhhHHHHHHHhCCCCeEEEecCCh
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGDL  277 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~v~~s~Di  277 (333)
                      +...            .+++.++.+ ..+.. ..|..+...  .....++.  ..+++..+.++.+|...+..+.+..|.
T Consensus       122 i~~~------------~l~~~~~~~-~r~~g-~h~~~pp~~--~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~  185 (295)
T PLN02545        122 ISIT------------RLASATQRP-QQVIG-MHFMNPPPI--MKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDY  185 (295)
T ss_pred             CCHH------------HHHhhcCCC-cceEE-EeccCCccc--CceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCc
Confidence            7654            245544432 12211 112222111  11122222  235678899999999888777766665


Q ss_pred             hHH
Q 019978          278 VTH  280 (333)
Q Consensus       278 ~gv  280 (333)
                      -|-
T Consensus       186 ~g~  188 (295)
T PLN02545        186 PGF  188 (295)
T ss_pred             ccH
Confidence            553

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.26  E-value=2.8e-10  Score=106.33  Aligned_cols=149  Identities=16%  Similarity=0.104  Sum_probs=102.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|.||.+++..|.+. |. .. ..+.+|+|++++++++.         .             .+.        
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~-g~-~~-~~i~v~~r~~~~~~~l~---------~-------------~~~--------   47 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTS-PA-DV-SEIIVSPRNAQIAARLA---------E-------------RFP--------   47 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhC-CC-Ch-heEEEECCCHHHHHHHH---------H-------------HcC--------
Confidence            6899999999999999999987 61 11 34678998876543211         0             000        


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                                             .+.+.++.+++++++|+||+|+|++.+.++++++.  +.+   ++++|++..|+..+
T Consensus        48 -----------------------~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~~l~--~~~---~~~vis~~ag~~~~   99 (258)
T PRK06476         48 -----------------------KVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLRALR--FRP---GQTVISVIAATDRA   99 (258)
T ss_pred             -----------------------CceEeCCHHHHHHhCCEEEEEeCHHHHHHHHHHhc--cCC---CCEEEEECCCCCHH
Confidence                                   23455677777889999999999999999998873  344   67899988777754


Q ss_pred             ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEe
Q 019978          204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD  273 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~  273 (333)
                                  .+++.++..  ...++..|+++.....+...   ++...   +.++++|+..|-.++.
T Consensus       100 ------------~l~~~~~~~--~~~~r~~P~~~~a~~~g~t~---~~~~~---~~~~~l~~~lG~~~~~  149 (258)
T PRK06476        100 ------------ALLEWIGHD--VKLVRAIPLPFVAERKGVTA---IYPPD---PFVAALFDALGTAVEC  149 (258)
T ss_pred             ------------HHHHHhCCC--CCEEEECCCChhhhCCCCeE---ecCCH---HHHHHHHHhcCCcEEE
Confidence                        467766532  23578899988765554322   23222   4777888877765554

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=99.26  E-value=1.3e-11  Score=105.56  Aligned_cols=116  Identities=22%  Similarity=0.361  Sum_probs=83.7

Q ss_pred             EEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcCCc
Q 019978           46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRT  125 (333)
Q Consensus        46 I~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~  125 (333)
                      |+|+|+|++|+.+|..|++. |     ++|+++.|++ +++.++.+++                   .+....   ++..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~-g-----~~V~l~~r~~-~~~~~~~~g~-------------------~~~~~~---~~~~   51 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQA-G-----HDVTLVSRSP-RLEAIKEQGL-------------------TITGPD---GDET   51 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHT-T-----CEEEEEESHH-HHHHHHHHCE-------------------EEEETT---EEEE
T ss_pred             CEEECcCHHHHHHHHHHHHC-C-----CceEEEEccc-cHHhhhheeE-------------------EEEecc---ccee
Confidence            78999999999999999998 8     9999999998 6665443331                   111100   0000


Q ss_pred             ccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccccc
Q 019978          126 LHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELE  205 (333)
Q Consensus       126 l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~  205 (333)
                      +.                   ......+..+..+.+|+||+|||+.+++++++.+++++.+   ++.|++++||+...  
T Consensus        52 ~~-------------------~~~~~~~~~~~~~~~D~viv~vKa~~~~~~l~~l~~~~~~---~t~iv~~qNG~g~~--  107 (151)
T PF02558_consen   52 VQ-------------------PPIVISAPSADAGPYDLVIVAVKAYQLEQALQSLKPYLDP---NTTIVSLQNGMGNE--  107 (151)
T ss_dssp             EE-------------------EEEEESSHGHHHSTESEEEE-SSGGGHHHHHHHHCTGEET---TEEEEEESSSSSHH--
T ss_pred             cc-------------------cccccCcchhccCCCcEEEEEecccchHHHHHHHhhccCC---CcEEEEEeCCCCcH--
Confidence            10                   1222333323467899999999999999999999999987   78999999999975  


Q ss_pred             CCccCCCHHHHHHhHhCC
Q 019978          206 AVPRIITPTQMINRATGV  223 (333)
Q Consensus       206 ~~~~~~~~se~i~~~lg~  223 (333)
                               +.+++.++.
T Consensus       108 ---------~~l~~~~~~  116 (151)
T PF02558_consen  108 ---------EVLAEYFPR  116 (151)
T ss_dssp             ---------HHHHCHSTG
T ss_pred             ---------HHHHHHcCC
Confidence                     567777753

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=99.24  E-value=1.7e-10  Score=112.56  Aligned_cols=189  Identities=14%  Similarity=0.095  Sum_probs=122.1

Q ss_pred             ceEEEECCCH--------------------HHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhH
Q 019978           44 LRIVGVGAGA--------------------WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV  103 (333)
Q Consensus        44 ~kI~IIGaG~--------------------mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~  103 (333)
                      |||+|.|+|+                    -|+++|..|+++ |     |+|++|+|+++.++.   +++    +     
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a-G-----~~V~v~Dr~~~~l~~---~~~----~-----   62 (342)
T PRK12557          1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA-G-----HDVVLAEPNRSILSE---ELW----K-----   62 (342)
T ss_pred             CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC-C-----CeEEEEECCHHHhhH---HHH----H-----
Confidence            6788888886                    488999999999 8     999999998864321   000    0     


Q ss_pred             HHHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHHHHHHh
Q 019978          104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVFEEISR  182 (333)
Q Consensus       104 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~-~~~vl~~i~~  182 (333)
                               .+..                             ..+.++++..++++++|+||+++|+.. ++++++.+.+
T Consensus        63 ---------~l~~-----------------------------~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~  104 (342)
T PRK12557         63 ---------KVED-----------------------------AGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILP  104 (342)
T ss_pred             ---------HHHH-----------------------------CCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHh
Confidence                     0000                             135566788888899999999999988 9999999999


Q ss_pred             hhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCC--------CCcEEEEcCCCchHHHhccCceeEEEeCCh
Q 019978          183 YWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP--------IENILYLGGPNIASEIYNKEYANARICGAE  254 (333)
Q Consensus       183 ~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~--------~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~  254 (333)
                      .+++   +++|++++++ .+.        ..++.+++.++.+        .++..+..+|++...+..+.++......++
T Consensus       105 ~L~~---g~IVId~ST~-~~~--------~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~~~  172 (342)
T PRK12557        105 HLPE---NAVICNTCTV-SPV--------VLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELATE  172 (342)
T ss_pred             hCCC---CCEEEEecCC-CHH--------HHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCCCH
Confidence            8876   6777776644 221        2224454544311        122333455566555554444422334467


Q ss_pred             hhHHHHHHHhCCCCeEEEecCChhHHHHHHHHHHHH-HH-HHHHHhccC
Q 019978          255 KWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVY-AI-GAGMVAALT  301 (333)
Q Consensus       255 ~~~~~l~~ll~~~~~~v~~s~Di~gve~~~alkNv~-Ai-~~Gi~~gl~  301 (333)
                      +..++++.+|+..+.+++..+. --....+.+-|++ ++ .+|+++.+-
T Consensus       173 e~~e~v~~LL~a~G~~v~~~~~-g~~~~vk~~~n~l~av~~a~~aE~~~  220 (342)
T PRK12557        173 EQIEKCVELAESIGKEPYVVPA-DVVSAVADMGSLVTAVALSGVLDYYS  220 (342)
T ss_pred             HHHHHHHHHHHHcCCEEEEeCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999999998876652 2234445566653 23 256655543

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.24  E-value=4.7e-10  Score=107.63  Aligned_cols=181  Identities=18%  Similarity=0.180  Sum_probs=111.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +|+|+|||+|.||+++|..|+++ |     ++|++|+++++.++++...     +...   +.++... .++...     
T Consensus         2 ~~~V~VIG~G~mG~~iA~~la~~-G-----~~V~v~d~~~~~~~~~~~~-----~~~~---l~~l~~~-g~~~~~-----   61 (308)
T PRK06129          2 MGSVAIIGAGLIGRAWAIVFARA-G-----HEVRLWDADPAAAAAAPAY-----IAGR---LEDLAAF-DLLDGE-----   61 (308)
T ss_pred             CcEEEEECccHHHHHHHHHHHHC-C-----CeeEEEeCCHHHHHHHHHH-----HHHH---HHHHHHc-CCCchh-----
Confidence            46999999999999999999999 8     9999999998766543211     1110   0000000 011100     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                        .  .             +..+.++..+++++++++++|+|++++|+.  ....++.++..+.++   +.++.|.++++
T Consensus        62 --~--~-------------~~~~~~i~~~~~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~---~~ii~ssts~~  121 (308)
T PRK06129         62 --A--P-------------DAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPP---HAILASSTSAL  121 (308)
T ss_pred             --h--H-------------HHHhcCeEEECcHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCC---cceEEEeCCCC
Confidence              0  0             001125778899988899999999999986  578888888887665   56666666654


Q ss_pred             cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE---eCChhhHHHHHHHhCCCCeEEEec-CC
Q 019978          201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI---CGAEKWRKPLAKFLRRPHFTVWDN-GD  276 (333)
Q Consensus       201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~---~~~~~~~~~l~~ll~~~~~~v~~s-~D  276 (333)
                      ..            ..+.+.+..+.  ..+...|-.+....   +...++   .++++..+.+..+|...+.++... .|
T Consensus       122 ~~------------~~la~~~~~~~--~~~~~hp~~p~~~~---~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~  184 (308)
T PRK06129        122 LA------------SAFTEHLAGRE--RCLVAHPINPPYLI---PVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRRE  184 (308)
T ss_pred             CH------------HHHHHhcCCcc--cEEEEecCCCcccC---ceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCC
Confidence            43            23555554321  23444444331111   111123   256678889999998888765543 56


Q ss_pred             hhHH
Q 019978          277 LVTH  280 (333)
Q Consensus       277 i~gv  280 (333)
                      .-|.
T Consensus       185 ~~G~  188 (308)
T PRK06129        185 IDGF  188 (308)
T ss_pred             CccH
Confidence            5553

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.24  E-value=1.1e-10  Score=118.58  Aligned_cols=192  Identities=17%  Similarity=0.114  Sum_probs=122.5

Q ss_pred             CCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhh
Q 019978           39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE  118 (333)
Q Consensus        39 ~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~  118 (333)
                      .+..+++|+|||.|.||+.||..|+++ |     ++|++|+|++++++++...        ..            ..+. 
T Consensus         2 ~~~~~~~IG~IGLG~MG~~mA~nL~~~-G-----~~V~V~NRt~~k~~~l~~~--------~~------------~~Ga-   54 (493)
T PLN02350          2 ASAALSRIGLAGLAVMGQNLALNIAEK-G-----FPISVYNRTTSKVDETVER--------AK------------KEGN-   54 (493)
T ss_pred             CCCCCCCEEEEeeHHHHHHHHHHHHhC-C-----CeEEEECCCHHHHHHHHHh--------hh------------hcCC-
Confidence            456778999999999999999999999 8     9999999998876542210        00            0000 


Q ss_pred             hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCch-hHHHHHHHHHhhhhccCCCCEEE
Q 019978          119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVII  194 (333)
Q Consensus       119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~---aDlIIlaVps~-~~~~vl~~i~~~l~~~~~~~~Iv  194 (333)
                                                 ..+....+++++++.   +|+||++||.. .++++++.+.+.+.+   +.+||
T Consensus        55 ---------------------------~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~---G~iiI  104 (493)
T PLN02350         55 ---------------------------LPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEP---GDCII  104 (493)
T ss_pred             ---------------------------cccccCCCHHHHHhcCCCCCEEEEECCCcHHHHHHHHHHHhhcCC---CCEEE
Confidence                                       012344667777765   99999999975 789999888888876   67888


Q ss_pred             EeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH-HhccCceeEEEeCChhhHHHHHHHhCCCCeE---
Q 019978          195 SLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-IYNKEYANARICGAEKWRKPLAKFLRRPHFT---  270 (333)
Q Consensus       195 s~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e-v~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~---  270 (333)
                      .+++.-...+      ....+.+.+ -|     +.++..|....+ .++..+ .++++++++..++++.+|+..+-+   
T Consensus       105 D~sT~~~~~t------~~~~~~l~~-~G-----i~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~pvL~~ia~k~~~  171 (493)
T PLN02350        105 DGGNEWYENT------ERRIKEAAE-KG-----LLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIEDILEKVAAQVDD  171 (493)
T ss_pred             ECCCCCHHHH------HHHHHHHHH-cC-----CeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHHHHHHHHhhhcCC
Confidence            8765543331      111222221 12     234444444322 233334 456788888889999988865432   


Q ss_pred             ---EEecCChhHHHHHHHHHHH--HHHHHHHHhcc
Q 019978          271 ---VWDNGDLVTHEVMGGLKNV--YAIGAGMVAAL  300 (333)
Q Consensus       271 ---v~~s~Di~gve~~~alkNv--~Ai~~Gi~~gl  300 (333)
                         +.+..+.=.-...+...|.  ++...++++++
T Consensus       172 ~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~  206 (493)
T PLN02350        172 GPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAY  206 (493)
T ss_pred             CCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               4444554333566777775  34445555554

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.22  E-value=4.8e-10  Score=112.77  Aligned_cols=159  Identities=19%  Similarity=0.270  Sum_probs=107.8

Q ss_pred             ceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        44 ~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      |||+||| +|.||.++|..|.+. |     ++|++|+|+++.+.++.        .+                       
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~-G-----~~V~v~~r~~~~~~~~a--------~~-----------------------   43 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEK-G-----FEVIVTGRDPKKGKEVA--------KE-----------------------   43 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHC-C-----CEEEEEECChHHHHHHH--------HH-----------------------
Confidence            6999998 799999999999998 8     89999999876432110        00                       


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                                             ..+.++++.++++.++|+||+|+|...+.++++++.+++++   +++|++++.. . 
T Consensus        44 -----------------------~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~~l~~~l~~---~~iViDvsSv-K-   95 (437)
T PRK08655         44 -----------------------LGVEYANDNIDAAKDADIVIISVPINVTEDVIKEVAPHVKE---GSLLMDVTSV-K-   95 (437)
T ss_pred             -----------------------cCCeeccCHHHHhccCCEEEEecCHHHHHHHHHHHHhhCCC---CCEEEEcccc-c-
Confidence                                   02334567777889999999999999999999999998887   7888876531 1 


Q ss_pred             cccCCccCCCHHHHHHhHhCCCCCcEE---EEcCCCchHHHhccCceeEEEe--CChhhHHHHHHHhCCCCeEEEecCCh
Q 019978          203 ELEAVPRIITPTQMINRATGVPIENIL---YLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDL  277 (333)
Q Consensus       203 ~~~~~~~~~~~se~i~~~lg~~~~~~~---vl~GP~~a~ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v~~s~Di  277 (333)
                              ..+.+.+.+.++.. ..+.   -+.||+.+  ...+.....+..  .+++..+.++++|+..|.+++..+.-
T Consensus        96 --------~~~~~~l~~~~~~~-~~~V~~HPmaGp~~~--~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~~~e  164 (437)
T PRK08655         96 --------ERPVEAMEEYAPEG-VEILPTHPMFGPRTP--SLKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVTSPE  164 (437)
T ss_pred             --------HHHHHHHHHhcCCC-CEEEEcCCCCCCCCc--ccCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHH
Confidence                    12234455555421 1111   12356554  233433332222  34567899999999999988865443


Q ss_pred             h
Q 019978          278 V  278 (333)
Q Consensus       278 ~  278 (333)
                      .
T Consensus       165 ~  165 (437)
T PRK08655        165 E  165 (437)
T ss_pred             H
Confidence            3

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.22  E-value=3e-10  Score=109.90  Aligned_cols=176  Identities=19%  Similarity=0.178  Sum_probs=111.1

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      +.+||+|||+|.||+.+|..++.. |     ++|++|+++++.+++... .    +...   ++++....          
T Consensus         6 ~i~~VaVIGaG~MG~giA~~~a~a-G-----~~V~l~D~~~~~~~~~~~-~----i~~~---~~~~~~~~----------   61 (321)
T PRK07066          6 DIKTFAAIGSGVIGSGWVARALAH-G-----LDVVAWDPAPGAEAALRA-N----VANA---WPALERQG----------   61 (321)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-H----HHHH---HHHHHHcC----------
Confidence            357999999999999999999999 8     999999999876654321 1    1111   11111010          


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                          +.++             ....++..++++++++.+||+|+.++|..  ...++++++.+++++   +++|.|.|.+
T Consensus        62 ----~~~~-------------~~~~~i~~~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~---~aIlaSnTS~  121 (321)
T PRK07066         62 ----LAPG-------------ASPARLRFVATIEACVADADFIQESAPEREALKLELHERISRAAKP---DAIIASSTSG  121 (321)
T ss_pred             ----CChh-------------hHHhhceecCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCC---CeEEEECCCc
Confidence                0000             01126778889999999999999999986  588888999999887   7777777766


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEE--cCCCchHHHhccCceeEEE-e--CChhhHHHHHHHhCCCCeEEE-e
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARI-C--GAEKWRKPLAKFLRRPHFTVW-D  273 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl--~GP~~a~ev~~~~~~~~~~-~--~~~~~~~~l~~ll~~~~~~v~-~  273 (333)
                      +...           + +.+.+..+ ..+...  .-|.+..      +..-++ +  .+++..+.+.+++...|..+. +
T Consensus       122 l~~s-----------~-la~~~~~p-~R~~g~HffnP~~~~------pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v  182 (321)
T PRK07066        122 LLPT-----------D-FYARATHP-ERCVVGHPFNPVYLL------PLVEVLGGERTAPEAVDAAMGIYRALGMRPLHV  182 (321)
T ss_pred             cCHH-----------H-HHHhcCCc-ccEEEEecCCccccC------ceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEec
Confidence            6543           2 44445433 222221  2222211      111122 1  245677888888888775554 3


Q ss_pred             cCChhHH
Q 019978          274 NGDLVTH  280 (333)
Q Consensus       274 s~Di~gv  280 (333)
                      ..|.-|-
T Consensus       183 ~kd~pGF  189 (321)
T PRK07066        183 RKEVPGF  189 (321)
T ss_pred             CCCCccH
Confidence            3566653

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.22  E-value=2.2e-10  Score=108.37  Aligned_cols=170  Identities=13%  Similarity=0.077  Sum_probs=103.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|.||.++|..|.++ |     ++|++|+++++.++++..        .                +.      
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~-g-----~~V~~~d~~~~~~~~a~~--------~----------------g~------   44 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSL-G-----HTVYGVSRRESTCERAIE--------R----------------GL------   44 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHH--------C----------------CC------
Confidence            6899999999999999999998 8     999999998865432110        0                00      


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                                             -...+++. +++.++|+||+|+|...+.++++++.+++++   +++| +-+.++...
T Consensus        45 -----------------------~~~~~~~~-~~~~~aDlVilavp~~~~~~~~~~l~~~l~~---~~ii-~d~~Svk~~   96 (279)
T PRK07417         45 -----------------------VDEASTDL-SLLKDCDLVILALPIGLLLPPSEQLIPALPP---EAIV-TDVGSVKAP   96 (279)
T ss_pred             -----------------------cccccCCH-hHhcCCCEEEEcCCHHHHHHHHHHHHHhCCC---CcEE-EeCcchHHH
Confidence                                   00122344 3578999999999999999999999998876   5544 444344332


Q ss_pred             ccCCccCCCHHHHHHhHhCCCCCcEE--EEcCCCc-----hH-HHhccCceeEEEe--CChhhHHHHHHHhCCCCeEEEe
Q 019978          204 LEAVPRIITPTQMINRATGVPIENIL--YLGGPNI-----AS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWD  273 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~~~~~--vl~GP~~-----a~-ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v~~  273 (333)
                                  .+++........+.  -+.||..     +. ....+.+..++..  .+++..+.++.+++..|.++..
T Consensus        97 ------------~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~~v~  164 (279)
T PRK07417         97 ------------IVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGSKIYT  164 (279)
T ss_pred             ------------HHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence                        22222111001000  1223321     11 1234444433332  3456788899999998888765


Q ss_pred             cCChhHHHHHHHHHHH
Q 019978          274 NGDLVTHEVMGGLKNV  289 (333)
Q Consensus       274 s~Di~gve~~~alkNv  289 (333)
                      .+.-...+..+..-+.
T Consensus       165 ~~~~~hD~~~a~~shl  180 (279)
T PRK07417        165 ADPEEHDRAVALISHL  180 (279)
T ss_pred             cCHHHHHHHHHHHcch
Confidence            5544444444443343

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=99.21  E-value=2.6e-10  Score=103.31  Aligned_cols=164  Identities=16%  Similarity=0.163  Sum_probs=110.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      ||+++|+|+|++|+++|..|++. |     |+|++-+|+.+...+..        .+             ++.       
T Consensus         1 m~~~~i~GtGniG~alA~~~a~a-g-----~eV~igs~r~~~~~~a~--------a~-------------~l~-------   46 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKA-G-----HEVIIGSSRGPKALAAA--------AA-------------ALG-------   46 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhC-C-----CeEEEecCCChhHHHHH--------HH-------------hhc-------
Confidence            68999999999999999999999 8     99999977665432110        00             110       


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                                             ..+.. .++++|++.+|+||++||-..+.+++++++..+.    +++||++++.+..
T Consensus        47 -----------------------~~i~~-~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~----~KIvID~tnp~~~   98 (211)
T COG2085          47 -----------------------PLITG-GSNEDAAALADVVVLAVPFEAIPDVLAELRDALG----GKIVIDATNPIEV   98 (211)
T ss_pred             -----------------------ccccc-CChHHHHhcCCEEEEeccHHHHHhHHHHHHHHhC----CeEEEecCCCccc
Confidence                                   02322 3456788999999999999999999999998776    5799999998542


Q ss_pred             ----cc-cCCccCCCHHHHHHhHhCCCCCcEEEEcCCCc--hHHHhcc----CceeEEEeCCh-hhHHHHHHHhCCCCeE
Q 019978          203 ----EL-EAVPRIITPTQMINRATGVPIENILYLGGPNI--ASEIYNK----EYANARICGAE-KWRKPLAKFLRRPHFT  270 (333)
Q Consensus       203 ----~~-~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~--a~ev~~~----~~~~~~~~~~~-~~~~~l~~ll~~~~~~  270 (333)
                          .. ...+.....++.++++++...    ++..-++  +..+...    .-+.+.+|+|+ +..+.+.++.+..||+
T Consensus        99 ~~~~~~~~~~~~~~saae~va~~lp~ak----VVkAFn~i~a~~l~~~~~~~~~~~v~vagDD~~Ak~~v~~L~~~iG~~  174 (211)
T COG2085          99 NGEPGDLYLVPSEGSAAEIVAKLLPGAK----VVKAFNTIPAAVLADLAKPGGRRDVLVAGDDAEAKAVVAELAEDIGFR  174 (211)
T ss_pred             cCCccccccCCCCCcHHHHHHHHCCCcc----hhhhhcccCHHHhccCCCcCCceeEEEecCcHHHHHHHHHHHHhcCcc
Confidence                11 112345677899999987431    2333333  1112111    11223346554 5677888888888887


Q ss_pred             EE
Q 019978          271 VW  272 (333)
Q Consensus       271 v~  272 (333)
                      ..
T Consensus       175 ~l  176 (211)
T COG2085         175 PL  176 (211)
T ss_pred             ee
Confidence            76

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.20  E-value=3.4e-10  Score=106.75  Aligned_cols=169  Identities=14%  Similarity=0.180  Sum_probs=103.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|.||+++|..|.++ |.  . ++|+.|+|+++.++++.         +              . +       
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~-g~--~-~~v~~~d~~~~~~~~~~---------~--------------~-g-------   45 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEK-GL--I-SKVYGYDHNELHLKKAL---------E--------------L-G-------   45 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhc-CC--C-CEEEEEcCCHHHHHHHH---------H--------------C-C-------
Confidence            6899999999999999999988 71  0 36888888876543210         0              0 0       


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                                             -+....+.+++. ++|+||+|||++.+.++++++.+ +++   +++|+.+  |....
T Consensus        46 -----------------------~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~~l~~-l~~---~~iv~d~--gs~k~   95 (275)
T PRK08507         46 -----------------------LVDEIVSFEELK-KCDVIFLAIPVDAIIEILPKLLD-IKE---NTTIIDL--GSTKA   95 (275)
T ss_pred             -----------------------CCcccCCHHHHh-cCCEEEEeCcHHHHHHHHHHHhc-cCC---CCEEEEC--ccchH
Confidence                                   011123455544 59999999999999999999988 776   6777653  22211


Q ss_pred             ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCC---------chH-HHhccCceeEEEe--CChhhHHHHHHHhCCCCeEE
Q 019978          204 LEAVPRIITPTQMINRATGVPIENILYLGGPN---------IAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTV  271 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~---------~a~-ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v  271 (333)
                              .+.+.+.+..+   .. .+-..|.         .+. ...++..+..+..  .+++..+.++.+|+..|.++
T Consensus        96 --------~i~~~~~~~~~---~~-~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~  163 (275)
T PRK08507         96 --------KIIESVPKHIR---KN-FIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMRI  163 (275)
T ss_pred             --------HHHHHHHHhcC---CC-EEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCCEE
Confidence                    12233333221   11 1222244         332 2334444433322  34557889999999999888


Q ss_pred             EecCChhHHHHHHHHHHH
Q 019978          272 WDNGDLVTHEVMGGLKNV  289 (333)
Q Consensus       272 ~~s~Di~gve~~~alkNv  289 (333)
                      ...+.-..-+..+..-++
T Consensus       164 ~~~~~~~hD~~~a~vs~l  181 (275)
T PRK08507        164 VYMDAKEHDLHAAYISHL  181 (275)
T ss_pred             EEeCHHHHHHHHHHHhHH
Confidence            776665555555544444

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.18  E-value=1e-09  Score=104.50  Aligned_cols=120  Identities=20%  Similarity=0.280  Sum_probs=83.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +.||+|||+|.||..+|..++.+ |     ++|++|+++++.+++... .+.+.+       ++..+... +...     
T Consensus         5 ~~~V~ViGaG~mG~~iA~~~a~~-G-----~~V~l~d~~~~~~~~~~~-~i~~~~-------~~~~~~g~-~~~~-----   64 (286)
T PRK07819          5 IQRVGVVGAGQMGAGIAEVCARA-G-----VDVLVFETTEELATAGRN-RIEKSL-------ERAVSRGK-LTER-----   64 (286)
T ss_pred             ccEEEEEcccHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHH-HHHHHH-------HHHHhccc-CChh-----
Confidence            45999999999999999999999 8     999999999987765321 111111       11111111 1100     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhh-hccCCCCEEEEeeec
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYW-KERITVPVIISLAKG  199 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l-~~~~~~~~Ivs~~kG  199 (333)
                        .  +             +..+.++++++|++ ++.+||+||.|+|.+  ...+++.++.+++ ++   +++++|.+.+
T Consensus        65 --~--~-------------~~~~~~l~~~~~~~-~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~---~~il~snTS~  123 (286)
T PRK07819         65 --E--R-------------DAALARLRFTTDLG-DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDP---DAVLASNTSS  123 (286)
T ss_pred             --h--H-------------HHHHhCeEeeCCHH-HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence              0  0             00123688889994 589999999999986  5778889999887 66   7888888877


Q ss_pred             Cccc
Q 019978          200 VEAE  203 (333)
Q Consensus       200 i~~~  203 (333)
                      +...
T Consensus       124 ~~~~  127 (286)
T PRK07819        124 IPIM  127 (286)
T ss_pred             CCHH
Confidence            6654

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.17  E-value=5e-10  Score=106.97  Aligned_cols=179  Identities=15%  Similarity=0.119  Sum_probs=107.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|.||.+||..|.++ |     ++|++|+|++. .+++         .+                        
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~-G-----~~v~v~~~~~~-~~~~---------~~------------------------   40 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARA-G-----HQLHVTTIGPV-ADEL---------LS------------------------   40 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHC-C-----CeEEEEeCCHh-HHHH---------HH------------------------
Confidence            5899999999999999999999 8     99999999863 2211         00                        


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHH---HHhhhhccCCCCEEEEeeec
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE---ISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~~---i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                            .......++.++++.+|+||+++|.. .+++++..   +.+.+.+   ++++|.++ .
T Consensus        41 ----------------------~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~---g~ivvd~s-T   94 (292)
T PRK15059         41 ----------------------LGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLK---GKTIVDMS-S   94 (292)
T ss_pred             ----------------------cCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCC---CCEEEECC-C
Confidence                                  01223456777788999999999976 67777633   3333444   56777654 3


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHh--ccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCCh
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY--NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL  277 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~--~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di  277 (333)
                      +.+.+     .+.+.+.+.+ .|.     .++..|.......  .+..+ ++++++++..++++.+|+..+-++++-.+.
T Consensus        95 ~~p~~-----~~~~~~~~~~-~G~-----~~vdaPVsGg~~~a~~g~l~-~~~gG~~~~~~~~~p~l~~~g~~~~~~G~~  162 (292)
T PRK15059         95 ISPIE-----TKRFARQVNE-LGG-----DYLDAPVSGGEIGAREGTLS-IMVGGDEAVFERVKPLFELLGKNITLVGGN  162 (292)
T ss_pred             CCHHH-----HHHHHHHHHH-cCC-----CEEEecCCCCHHHHhcCcEE-EEEcCCHHHHHHHHHHHHHHcCCcEEeCCc
Confidence            33331     1112222222 232     1333444332222  23222 345777888899999998776666555554


Q ss_pred             hHHHHHHHHHHHHHH--HHHHHhcc
Q 019978          278 VTHEVMGGLKNVYAI--GAGMVAAL  300 (333)
Q Consensus       278 ~gve~~~alkNv~Ai--~~Gi~~gl  300 (333)
                      -.....+...|.+..  ..++.+++
T Consensus       163 G~g~~~Kl~~N~l~~~~~~a~~Ea~  187 (292)
T PRK15059        163 GDGQTCKVANQIIVALNIEAVSEAL  187 (292)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334566666676432  23444443

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.15  E-value=4.5e-10  Score=113.77  Aligned_cols=185  Identities=14%  Similarity=0.083  Sum_probs=116.3

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR  124 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~  124 (333)
                      +|+|||+|.||.+||..|+++ |     ++|++|+|++++++++..        .             +..+        
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~-G-----~~V~v~drt~~~~~~l~~--------~-------------~~~g--------   45 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADH-G-----FTVSVYNRTPEKTDEFLA--------E-------------HAKG--------   45 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHh--------h-------------ccCC--------
Confidence            489999999999999999999 8     999999999987654221        0             0000        


Q ss_pred             cccchhhhhccccccCCCCCCCCeEEecCHHHHh---cCCCEEEEecCc-hhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV---WDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~---~~aDlIIlaVps-~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                           ..+...+++++.+   +.+|+||+++|+ ..++++++++.+++.+   +.+||.+++..
T Consensus        46 ---------------------~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi~~l~~~L~~---g~iIID~gns~  101 (467)
T TIGR00873        46 ---------------------KKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVINQLLPLLEK---GDIIIDGGNSH  101 (467)
T ss_pred             ---------------------CCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHHHHHHhhCCC---CCEEEECCCcC
Confidence                                 0122334455543   578999999998 6899999999999877   78898888766


Q ss_pred             cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchH-HHhccCceeEEEeCChhhHHHHHHHhCCCCeE------EEe
Q 019978          201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS-EIYNKEYANARICGAEKWRKPLAKFLRRPHFT------VWD  273 (333)
Q Consensus       201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~-ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~------v~~  273 (333)
                      ...+     .    +..++...   ..+.++.+|...- +.++..+ ..+++++++..++++.+|...+-+      +.+
T Consensus       102 ~~~t-----~----~~~~~l~~---~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~ia~~~~~~~~~~~  168 (467)
T TIGR00873       102 YPDT-----E----RRYKELKA---KGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKIAAKVDGEPCCTW  168 (467)
T ss_pred             HHHH-----H----HHHHHHHh---cCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHHHhhhcCCCCceEE
Confidence            5542     1    11122111   1133455554432 2333334 345778888888898888865433      123


Q ss_pred             cCChhHHHHHHHHHHH--HHHHHHHHhccC
Q 019978          274 NGDLVTHEVMGGLKNV--YAIGAGMVAALT  301 (333)
Q Consensus       274 s~Di~gve~~~alkNv--~Ai~~Gi~~gl~  301 (333)
                      ..+.=.-...+..-|.  |+...++++++.
T Consensus       169 ~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~  198 (467)
T TIGR00873       169 IGPDGAGHYVKMVHNGIEYGDMQLICEAYD  198 (467)
T ss_pred             ECCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333223566666675  344455555543

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.14  E-value=2.3e-09  Score=102.71  Aligned_cols=163  Identities=21%  Similarity=0.196  Sum_probs=100.7

Q ss_pred             CCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhh
Q 019978           39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE  118 (333)
Q Consensus        39 ~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~  118 (333)
                      ++...+||+|||+|.||.++|..|.+. |.   .++|++|+|+++..+.+.         +              . +. 
T Consensus         2 ~~~~~~~I~IIG~G~mG~sla~~l~~~-g~---~~~V~~~dr~~~~~~~a~---------~--------------~-g~-   52 (307)
T PRK07502          2 SAPLFDRVALIGIGLIGSSLARAIRRL-GL---AGEIVGADRSAETRARAR---------E--------------L-GL-   52 (307)
T ss_pred             CccCCcEEEEEeeCHHHHHHHHHHHhc-CC---CcEEEEEECCHHHHHHHH---------h--------------C-CC-
Confidence            444557999999999999999999988 71   038999999886543211         0              0 00 


Q ss_pred             hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                                  .....++++++++++|+||+|+|...+.++++++.+++++   +++|+.+ .
T Consensus        53 ----------------------------~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~~l~~~l~~---~~iv~dv-g  100 (307)
T PRK07502         53 ----------------------------GDRVTTSAAEAVKGADLVILCVPVGASGAVAAEIAPHLKP---GAIVTDV-G  100 (307)
T ss_pred             ----------------------------CceecCCHHHHhcCCCEEEECCCHHHHHHHHHHHHhhCCC---CCEEEeC-c
Confidence                                        1123355667788999999999999999999999888876   5655443 2


Q ss_pred             cCcccccCCccCCCHHHHHHhHhCCCCCcEEEEc----------CCCch-HHHhccCceeEEE--eCChhhHHHHHHHhC
Q 019978          199 GVEAELEAVPRIITPTQMINRATGVPIENILYLG----------GPNIA-SEIYNKEYANARI--CGAEKWRKPLAKFLR  265 (333)
Q Consensus       199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~----------GP~~a-~ev~~~~~~~~~~--~~~~~~~~~l~~ll~  265 (333)
                      ++...         +.+.+.+.++..   +.++.          ||..+ .++..+.++.++.  ..+++..+.+.++|+
T Consensus       101 s~k~~---------~~~~~~~~~~~~---~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~  168 (307)
T PRK07502        101 SVKAS---------VIAAMAPHLPEG---VHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWR  168 (307)
T ss_pred             cchHH---------HHHHHHHhCCCC---CeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence            22221         112233333211   11222          22222 1333444443332  234567888999999


Q ss_pred             CCCeEEEec
Q 019978          266 RPHFTVWDN  274 (333)
Q Consensus       266 ~~~~~v~~s  274 (333)
                      ..|.+++..
T Consensus       169 ~lG~~~~~~  177 (307)
T PRK07502        169 ALGARVEEM  177 (307)
T ss_pred             HcCCEEEEc
Confidence            988877653

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.14  E-value=1.1e-09  Score=107.05  Aligned_cols=196  Identities=18%  Similarity=0.171  Sum_probs=125.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ++|+|||.|.+|..+|..++++ |     ++|+.+|.++.++++++         +++          .|....      
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~-G-----~~ViG~DIn~~~Vd~ln---------~G~----------~~i~e~------   58 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASA-G-----FKVIGVDINQKKVDKLN---------RGE----------SYIEEP------   58 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHc-C-----CceEeEeCCHHHHHHHh---------CCc----------ceeecC------
Confidence            8999999999999999999999 8     99999999998887654         332          122211      


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------hHHHHHHHHHhhhhccCCCCEE
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI  193 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~----------~~~~vl~~i~~~l~~~~~~~~I  193 (333)
                         +-+|+++.-+..       .++++|+|.++ +..||++|+|||..          ++++..+.|++++++   +.+|
T Consensus        59 ---~~~~~v~~~v~~-------g~lraTtd~~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~k---G~LV  124 (436)
T COG0677          59 ---DLDEVVKEAVES-------GKLRATTDPEE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKK---GDLV  124 (436)
T ss_pred             ---cHHHHHHHHHhc-------CCceEecChhh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCC---CCEE
Confidence               011222221111       36899999987 56999999999973          789999999999997   5544


Q ss_pred             EEeeecCcccccCCccCCCHHHHHHhH-hCCC-CCcEEEEcCCCchHHHh--ccCcee-EEEeC-ChhhHHHHHHHhCCC
Q 019978          194 ISLAKGVEAELEAVPRIITPTQMINRA-TGVP-IENILYLGGPNIASEIY--NKEYAN-ARICG-AEKWRKPLAKFLRRP  267 (333)
Q Consensus       194 vs~~kGi~~~~~~~~~~~~~se~i~~~-lg~~-~~~~~vl~GP~~a~ev~--~~~~~~-~~~~~-~~~~~~~l~~ll~~~  267 (333)
                      | +-+...++     +.+.+...+.+. .|.. ...+.+-.-|.......  ...... -++++ ++...+..+.++++.
T Consensus       125 I-lEST~~PG-----TTe~v~~plle~~sgL~~~~Df~laysPERv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~i  198 (436)
T COG0677         125 I-LESTTPPG-----TTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTI  198 (436)
T ss_pred             E-EecCCCCC-----cHHHHHHHHHhhcCCCcccceeeEeeCccccCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHh
Confidence            4 44455555     333333334443 2221 13344445554432111  111111 13343 455666666666654


Q ss_pred             CeEEEecCChhHHHHHHHHHHHH
Q 019978          268 HFTVWDNGDLVTHEVMGGLKNVY  290 (333)
Q Consensus       268 ~~~v~~s~Di~gve~~~alkNv~  290 (333)
                      --.+..-+|...+|.++.+-|++
T Consensus       199 v~~~~~vts~~tAEm~Kl~EN~f  221 (436)
T COG0677         199 VEGVIPVTSARTAEMVKLTENTF  221 (436)
T ss_pred             eEEEEEcCChHHHHHHHHHhhhh
Confidence            44577899999999999998873

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.09  E-value=1.9e-09  Score=114.60  Aligned_cols=121  Identities=12%  Similarity=0.179  Sum_probs=87.1

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ...||+|||+|.||..||..++.+ |     ++|++|+++++.+++... .+.+.+       ++...... +...    
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~l-------~~~~~~g~-~~~~----  372 (715)
T PRK11730        312 PVKQAAVLGAGIMGGGIAYQSASK-G-----VPVIMKDINQKALDLGMT-EAAKLL-------NKQVERGK-IDGA----  372 (715)
T ss_pred             ccceEEEECCchhHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHH-------HHHHHcCC-CChh----
Confidence            357899999999999999999999 8     999999999987654221 111111       11111111 1100    


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                         .  +             +..+.++++++|++ ++.+||+||.|||.+  ...+++.++.+++++   ++++.|.|.+
T Consensus       373 ---~--~-------------~~~~~~i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~---~~ilasNTSs  430 (715)
T PRK11730        373 ---K--M-------------AGVLSSIRPTLDYA-GFERVDVVVEAVVENPKVKAAVLAEVEQKVRE---DTILASNTST  430 (715)
T ss_pred             ---h--H-------------HHHHhCeEEeCCHH-HhcCCCEEEecccCcHHHHHHHHHHHHhhCCC---CcEEEEcCCC
Confidence               0  0             01123788999985 579999999999986  689999999999998   7888888888


Q ss_pred             Cccc
Q 019978          200 VEAE  203 (333)
Q Consensus       200 i~~~  203 (333)
                      ++..
T Consensus       431 l~i~  434 (715)
T PRK11730        431 ISIS  434 (715)
T ss_pred             CCHH
Confidence            7764

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=99.09  E-value=2.5e-10  Score=109.44  Aligned_cols=121  Identities=24%  Similarity=0.337  Sum_probs=88.4

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ..+||+|||+|.||+.+|..++.. |     ++|+++|++++.+++...     .+...   ++++....+ +...    
T Consensus         2 ~i~kv~ViGaG~MG~gIA~~~A~~-G-----~~V~l~D~~~~~~~~~~~-----~i~~~---l~k~~~~g~-l~~~----   62 (307)
T COG1250           2 EIKKVAVIGAGVMGAGIAAVFALA-G-----YDVVLKDISPEALERALA-----YIEKN---LEKLVEKGK-LTEE----   62 (307)
T ss_pred             CccEEEEEcccchhHHHHHHHhhc-C-----CceEEEeCCHHHHHHHHH-----HHHHH---HHHHHhcCC-CChh----
Confidence            357999999999999999999998 8     999999999877665332     11111   222211111 1110    


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                         .               .+..+.+++.++++. ++.+||+||.+|+..  ..+++++++..+.++   ++++-|.|++
T Consensus        63 ---~---------------~~~~l~~i~~~~~~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~---~aIlASNTSs  120 (307)
T COG1250          63 ---E---------------ADAALARITPTTDLA-ALKDADLVIEAVVEDLELKKQVFAELEALAKP---DAILASNTSS  120 (307)
T ss_pred             ---h---------------HHHHHhhccccCchh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCC---CcEEeeccCC
Confidence               0               011234788888886 689999999999986  689999999999988   8899999999


Q ss_pred             Cccc
Q 019978          200 VEAE  203 (333)
Q Consensus       200 i~~~  203 (333)
                      ++..
T Consensus       121 l~it  124 (307)
T COG1250         121 LSIT  124 (307)
T ss_pred             CCHH
Confidence            8875

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.08  E-value=6.4e-09  Score=106.41  Aligned_cols=179  Identities=18%  Similarity=0.191  Sum_probs=109.1

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      +.+||+|||+|.||+.||..++++ |     ++|++|+++++.+++... .    +...   ++++..... +...    
T Consensus         4 ~~~kV~VIGaG~MG~gIA~~la~a-G-----~~V~l~d~~~e~l~~~~~-~----i~~~---l~~~~~~G~-~~~~----   64 (503)
T TIGR02279         4 NVVTVAVIGAGAMGAGIAQVAASA-G-----HQVLLYDIRAEALARAIA-G----IEAR---LNSLVTKGK-LTAE----   64 (503)
T ss_pred             CccEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-H----HHHH---HHHHHhcCC-CCHH----
Confidence            457999999999999999999999 8     999999999987764321 1    1111   111111110 1000    


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                           .+++             .+.++..++++++ +.+||+||.|+|..  ..+.++.++.+++++   ++++.|.+.+
T Consensus        65 -----~~~~-------------~~~~i~~~~~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~---~~IlasnTSt  122 (503)
T TIGR02279        65 -----ECER-------------TLKRLIPVTDLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPA---DTIIASNTSS  122 (503)
T ss_pred             -----HHHH-------------HHhccEEeCCHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCC---CeEEEECCCC
Confidence                 0000             1136888899865 67999999999974  577788889888887   6777767766


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEE-EEcCCCchHHHhccCceeEEEeC---ChhhHHHHHHHhCCCCeEEEecC
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENIL-YLGGPNIASEIYNKEYANARICG---AEKWRKPLAKFLRRPHFTVWDNG  275 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~-vl~GP~~a~ev~~~~~~~~~~~~---~~~~~~~l~~ll~~~~~~v~~s~  275 (333)
                      +...           + +.+.+..+...+. -..-|....      +-..++.+   +++.++.+..++...+-.+....
T Consensus       123 l~i~-----------~-iA~~~~~p~r~~G~HFf~Papv~------~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~  184 (503)
T TIGR02279       123 LSIT-----------A-IAAGLARPERVAGLHFFNPAPVM------ALVEVVSGLATAAEVAEQLYETALAWGKQPVHCH  184 (503)
T ss_pred             CCHH-----------H-HHHhcCcccceEEEeccCccccC------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeC
Confidence            6653           2 4444433211110 112222211      11113333   56778888888887776666556


Q ss_pred             ChhH
Q 019978          276 DLVT  279 (333)
Q Consensus       276 Di~g  279 (333)
                      |.-|
T Consensus       185 d~pG  188 (503)
T TIGR02279       185 STPG  188 (503)
T ss_pred             CCCC
Confidence            6555

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=99.07  E-value=4.1e-09  Score=98.15  Aligned_cols=116  Identities=22%  Similarity=0.172  Sum_probs=89.4

Q ss_pred             eEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCc
Q 019978          148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN  227 (333)
Q Consensus       148 i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~  227 (333)
                      +.+.++.+++++++|+||+|||++.++++++++.+++.+   +++|||+++|+..+            .+++.++..  .
T Consensus        31 ~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~---~~~ivS~~agi~~~------------~l~~~~~~~--~   93 (245)
T TIGR00112        31 IVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGK---DKLLISIAAGVTLE------------KLSQLLGGT--R   93 (245)
T ss_pred             cEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccC---CCEEEEecCCCCHH------------HHHHHcCCC--C
Confidence            344567777788999999999999999999999987755   68999999999975            367778632  2


Q ss_pred             EEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCChhHH
Q 019978          228 ILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH  280 (333)
Q Consensus       228 ~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di~gv  280 (333)
                      ..++.+||.+..+.++...+... ..+++..+.++++|+..|..+++.++.+..
T Consensus        94 ~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~  147 (245)
T TIGR00112        94 RVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDA  147 (245)
T ss_pred             eEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcch
Confidence            46889999999988875443221 224467889999999999888777665553

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>PLN02858 fructose-bisphosphate aldolase

Probab=99.06  E-value=3.8e-09  Score=118.83  Aligned_cols=192  Identities=14%  Similarity=0.074  Sum_probs=119.7

Q ss_pred             HhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccc
Q 019978           34 RLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAY  113 (333)
Q Consensus        34 ~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~  113 (333)
                      +...|.....++|+|||.|+||.+||..|++. |     ++|++|+|++++++++..                       
T Consensus       315 ~~~~~~~~~~~~IGfIGlG~MG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~l~~-----------------------  365 (1378)
T PLN02858        315 KQITMQAKPVKRIGFIGLGAMGFGMASHLLKS-N-----FSVCGYDVYKPTLVRFEN-----------------------  365 (1378)
T ss_pred             HHhhccccCCCeEEEECchHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHH-----------------------
Confidence            34445555678999999999999999999999 8     999999999865542110                       


Q ss_pred             cchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-chhHHHHHH---HHHhhhhccCC
Q 019978          114 LKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFE---EISRYWKERIT  189 (333)
Q Consensus       114 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVp-s~~~~~vl~---~i~~~l~~~~~  189 (333)
                       .                               .....+++.++++++|+||+++| +..+++++.   .+...+.+   
T Consensus       366 -~-------------------------------Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~---  410 (1378)
T PLN02858        366 -A-------------------------------GGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPA---  410 (1378)
T ss_pred             -c-------------------------------CCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCC---
Confidence             0                               12234677788899999999999 677888873   34444454   


Q ss_pred             CCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH--HhccCceeEEEeCChhhHHHHHHHhCCC
Q 019978          190 VPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRP  267 (333)
Q Consensus       190 ~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e--v~~~~~~~~~~~~~~~~~~~l~~ll~~~  267 (333)
                      ++++|.++ .+.+++     .+.+.+.+.+. +.   .+.++-.|.....  ...+..+ .+++++++..++++.+|+..
T Consensus       411 g~ivVd~S-TvsP~~-----~~~la~~l~~~-g~---g~~~lDAPVsGg~~~A~~G~L~-imvgG~~~~~~~~~plL~~l  479 (1378)
T PLN02858        411 GASIVLSS-TVSPGF-----VIQLERRLENE-GR---DIKLVDAPVSGGVKRAAMGTLT-IMASGTDEALKSAGSVLSAL  479 (1378)
T ss_pred             CCEEEECC-CCCHHH-----HHHHHHHHHhh-CC---CcEEEEccCCCChhhhhcCCce-EEEECCHHHHHHHHHHHHHH
Confidence            66777654 333331     11222222221 11   1233444433221  1233333 35677778888999999876


Q ss_pred             CeEEEe-cCChhHHHHHHHHHHHHHH--HHHHHhcc
Q 019978          268 HFTVWD-NGDLVTHEVMGGLKNVYAI--GAGMVAAL  300 (333)
Q Consensus       268 ~~~v~~-s~Di~gve~~~alkNv~Ai--~~Gi~~gl  300 (333)
                      +-++++ ..+.-..+..+.+.|.+..  .+++.+++
T Consensus       480 g~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal  515 (1378)
T PLN02858        480 SEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAM  515 (1378)
T ss_pred             hCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666654 5677667888888887433  24444443

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=99.06  E-value=4.2e-09  Score=111.73  Aligned_cols=121  Identities=15%  Similarity=0.215  Sum_probs=85.9

Q ss_pred             CCceEEEECCCHHHHHHHHHHH-HhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La-~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ..+||+|||+|.||+.+|..++ .. |     ++|++|+.+++.+++... .+.+.       +++.......-+..   
T Consensus       303 ~i~~v~ViGaG~mG~~iA~~~a~~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~-------l~~~~~~~~~~~~~---  365 (699)
T TIGR02440       303 KIKKVGILGGGLMGGGIASVTATKA-G-----IPVRIKDINPQGINNALK-YAWKL-------LDKGVKRRHMTPAE---  365 (699)
T ss_pred             cccEEEEECCcHHHHHHHHHHHHHc-C-----CeEEEEeCCHHHHHHHHH-HHHHH-------HHHHHHcCCCCHHH---
Confidence            4578999999999999999998 57 8     999999999886654321 11111       11111111110000   


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                             +             +..+.+++.++|++ ++.+||+||.|+|..  ...+++.++.+++++   ++++.|.|.
T Consensus       366 -------~-------------~~~~~~i~~~~~~~-~~~~adlViEav~E~l~~K~~v~~~l~~~~~~---~~ilasnTS  421 (699)
T TIGR02440       366 -------R-------------DNQMALITGTTDYR-GFKDVDIVIEAVFEDLALKHQMVKDIEQECAA---HTIFASNTS  421 (699)
T ss_pred             -------H-------------HHHHcCeEEeCChH-HhccCCEEEEeccccHHHHHHHHHHHHhhCCC---CcEEEeCCC
Confidence                   0             01123788999985 689999999999986  689999999999988   888888888


Q ss_pred             cCccc
Q 019978          199 GVEAE  203 (333)
Q Consensus       199 Gi~~~  203 (333)
                      +++..
T Consensus       422 ~l~i~  426 (699)
T TIGR02440       422 SLPIG  426 (699)
T ss_pred             CCCHH
Confidence            88765

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PLN02256 arogenate dehydrogenase

Probab=99.03  E-value=1.1e-08  Score=98.40  Aligned_cols=157  Identities=13%  Similarity=0.098  Sum_probs=103.9

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ..|+|+|||+|.||.++|..|.+. |     ++|++|++++.. +.         ...              +       
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L~~~-G-----~~V~~~d~~~~~-~~---------a~~--------------~-------   77 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTFVKQ-G-----HTVLATSRSDYS-DI---------AAE--------------L-------   77 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhC-C-----CEEEEEECccHH-HH---------HHH--------------c-------
Confidence            458999999999999999999988 7     899999998631 10         000              0       


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCchhHHHHHHHH-HhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEI-SRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~-~~aDlIIlaVps~~~~~vl~~i-~~~l~~~~~~~~Ivs~~kG  199 (333)
                                               .+...++.++++ .++|+||+|||...+.++++++ .+++++   +++|++++.+
T Consensus        78 -------------------------gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~l~~~~l~~---~~iviDv~Sv  129 (304)
T PLN02256         78 -------------------------GVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRSLPLQRLKR---STLFVDVLSV  129 (304)
T ss_pred             -------------------------CCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHhhhhhccCC---CCEEEecCCc
Confidence                                     122345666655 4799999999999999999998 566776   6888877542


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhcc----CceeEEE------eCChhhHHHHHHHhCCCCe
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNK----EYANARI------CGAEKWRKPLAKFLRRPHF  269 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~----~~~~~~~------~~~~~~~~~l~~ll~~~~~  269 (333)
                      -..          +.+.+.+.++.. . ..+...|.+..+...+    .+.....      ..+++..+.+++++...|.
T Consensus       130 K~~----------~~~~~~~~l~~~-~-~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa  197 (304)
T PLN02256        130 KEF----------PKNLLLQVLPEE-F-DILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERFLDIFEEEGC  197 (304)
T ss_pred             hHH----------HHHHHHHhCCCC-C-eEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHHHHHHHHCCC
Confidence            111          123456666421 1 2456678777665422    2221111      1134567889999988887


Q ss_pred             EEEecC
Q 019978          270 TVWDNG  275 (333)
Q Consensus       270 ~v~~s~  275 (333)
                      ++...+
T Consensus       198 ~v~~~~  203 (304)
T PLN02256        198 RMVEMS  203 (304)
T ss_pred             EEEEeC
Confidence            776544

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.01  E-value=6.5e-09  Score=110.41  Aligned_cols=121  Identities=15%  Similarity=0.225  Sum_probs=86.4

Q ss_pred             CCceEEEECCCHHHHHHHHHHH-HhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La-~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ..+||+|||+|.||..||..++ .. |     ++|++|+++++.+++... .+.+.+       .+..+... +...   
T Consensus       308 ~i~~v~ViGaG~mG~giA~~~a~~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~l-------~~~~~~~~-~~~~---  369 (708)
T PRK11154        308 PVNKVGVLGGGLMGGGIAYVTATKA-G-----LPVRIKDINPQGINHALK-YSWDLL-------DKKVKRRH-LKPS---  369 (708)
T ss_pred             cccEEEEECCchhhHHHHHHHHHHc-C-----CeEEEEeCCHHHHHHHHH-HHHHHH-------HHHHHcCC-CCHH---
Confidence            4579999999999999999999 77 7     999999999876654321 111111       11111111 1100   


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                          .  +             +..+.++++++|++ ++.+||+||.|||..  ...+++.++.+++++   ++++.|.|.
T Consensus       370 ----~--~-------------~~~~~~i~~~~~~~-~~~~aDlViEav~E~~~~K~~v~~~le~~~~~---~~ilasnTS  426 (708)
T PRK11154        370 ----E--R-------------DKQMALISGTTDYR-GFKHADVVIEAVFEDLALKQQMVAEVEQNCAP---HTIFASNTS  426 (708)
T ss_pred             ----H--H-------------HHHHhcEEEeCChH-HhccCCEEeecccccHHHHHHHHHHHHhhCCC---CcEEEECCC
Confidence                0  0             01123788999984 689999999999986  689999999999998   888888888


Q ss_pred             cCccc
Q 019978          199 GVEAE  203 (333)
Q Consensus       199 Gi~~~  203 (333)
                      +++..
T Consensus       427 ~l~i~  431 (708)
T PRK11154        427 SLPIG  431 (708)
T ss_pred             CCCHH
Confidence            88765

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.00  E-value=7.9e-09  Score=109.80  Aligned_cols=122  Identities=16%  Similarity=0.175  Sum_probs=87.8

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .+.+||+|||+|.||..||..++.+ |     ++|++|+++++.+++... .+.+.+.       +...... +...   
T Consensus       311 ~~i~~v~ViGaG~mG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~~~-------~~~~~g~-~~~~---  372 (714)
T TIGR02437       311 KDVKQAAVLGAGIMGGGIAYQSASK-G-----TPIVMKDINQHSLDLGLT-EAAKLLN-------KQVERGR-ITPA---  372 (714)
T ss_pred             cccceEEEECCchHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHH-------HHHHcCC-CChh---
Confidence            3567999999999999999999999 8     999999999987764321 1111111       1111111 1100   


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                          .  .             +..+.+++.++|++ ++.+||+||.|||.+  ..++++.++.+++++   ++++.|.|.
T Consensus       373 ----~--~-------------~~~~~~i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~---~~ilasnTS  429 (714)
T TIGR02437       373 ----K--M-------------AGVLNGITPTLSYA-GFDNVDIVVEAVVENPKVKAAVLAEVEQHVRE---DAILASNTS  429 (714)
T ss_pred             ----h--H-------------HHHHhCeEEeCCHH-HhcCCCEEEEcCcccHHHHHHHHHHHHhhCCC---CcEEEECCC
Confidence                0  0             11123788899985 579999999999986  689999999999998   888888888


Q ss_pred             cCccc
Q 019978          199 GVEAE  203 (333)
Q Consensus       199 Gi~~~  203 (333)
                      +++..
T Consensus       430 ~l~i~  434 (714)
T TIGR02437       430 TISIS  434 (714)
T ss_pred             CCCHH
Confidence            88765

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK06545 prephenate dehydrogenase; Validated

Probab=98.99  E-value=8.6e-09  Score=101.14  Aligned_cols=160  Identities=15%  Similarity=0.109  Sum_probs=100.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      +||+|||+|.||+++|..|.++ |     ++|.+|+++++..+...         .               .+.      
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~-G-----~~v~i~~~~~~~~~~~~---------a---------------~~~------   44 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAA-G-----PDVFIIGYDPSAAQLAR---------A---------------LGF------   44 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhc-C-----CCeEEEEeCCCHHHHHH---------H---------------hcC------
Confidence            4799999999999999999999 8     89999999886432100         0               000      


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHh-hhhccCCCCEEEEeeecCcc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~-~l~~~~~~~~Ivs~~kGi~~  202 (333)
                       ..                    .-..++++++++++||+||+|||++.+.++++++.+ .+++   ++ +|+-..++..
T Consensus        45 -~~--------------------~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~l~~~~l~~---~~-ivtDv~SvK~   99 (359)
T PRK06545         45 -GV--------------------IDELAADLQRAAAEADLIVLAVPVDATAALLAELADLELKP---GV-IVTDVGSVKG   99 (359)
T ss_pred             -CC--------------------CcccccCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhcCCCC---Cc-EEEeCccccH
Confidence             00                    012346777888999999999999999999999987 3665   54 4443434332


Q ss_pred             cccCCccCCCHHHHHHhHhCCCC-----CcEE--EEcCCCchH-HHhccCceeEEEe--CChhhHHHHHHHhCCCCeEEE
Q 019978          203 ELEAVPRIITPTQMINRATGVPI-----ENIL--YLGGPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVW  272 (333)
Q Consensus       203 ~~~~~~~~~~~se~i~~~lg~~~-----~~~~--vl~GP~~a~-ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v~  272 (333)
                      .         +.+.+++.++...     +|+.  -.+||..+. ++..+.++.++..  .+++..+.++++|+..|.++.
T Consensus       100 ~---------i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v  170 (359)
T PRK06545        100 A---------ILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAELKDLLSGTGAKFV  170 (359)
T ss_pred             H---------HHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEE
Confidence            2         1122344332111     1111  012233332 4455555544432  355678899999999887775


Q ss_pred             e
Q 019978          273 D  273 (333)
Q Consensus       273 ~  273 (333)
                      .
T Consensus       171 ~  171 (359)
T PRK06545        171 V  171 (359)
T ss_pred             E
Confidence            3

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.98  E-value=7.8e-09  Score=110.19  Aligned_cols=122  Identities=17%  Similarity=0.238  Sum_probs=87.9

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ....+|+|||+|.||..||..++.+ |     ++|++|+++++.+++... .+.+.+       .+...... +...   
T Consensus       333 ~~i~~v~ViGaG~MG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~i~~~l-------~~~~~~g~-~~~~---  394 (737)
T TIGR02441       333 RPVKTLAVLGAGLMGAGIAQVSVDK-G-----LKTVLKDATPAGLDRGQQ-QVFKGL-------NKKVKRKK-ITSL---  394 (737)
T ss_pred             CcccEEEEECCCHhHHHHHHHHHhC-C-----CcEEEecCCHHHHHHHHH-HHHHHH-------HHHHHcCC-CCHH---
Confidence            3567999999999999999999999 8     999999999987765321 111111       11111111 1100   


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                            ..             +..+.+++.++|++ ++.+||+||.+||.+  ...+++.++.+++++   ++++.|.|.
T Consensus       395 ------~~-------------~~~~~~i~~~~~~~-~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~---~~ilasNTS  451 (737)
T TIGR02441       395 ------ER-------------DSILSNLTPTLDYS-GFKNADMVIEAVFEDLSLKHKVIKEVEAVVPP---HCIIASNTS  451 (737)
T ss_pred             ------HH-------------HHHHhCeEEeCCHH-HhccCCeehhhccccHHHHHHHHHHHHhhCCC---CcEEEEcCC
Confidence                  00             11123788899986 579999999999986  699999999999998   888888888


Q ss_pred             cCccc
Q 019978          199 GVEAE  203 (333)
Q Consensus       199 Gi~~~  203 (333)
                      ++...
T Consensus       452 sl~i~  456 (737)
T TIGR02441       452 ALPIK  456 (737)
T ss_pred             CCCHH
Confidence            88765

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.98  E-value=3.2e-08  Score=101.36  Aligned_cols=179  Identities=16%  Similarity=0.163  Sum_probs=108.4

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ...||+|||+|.||..||..++.+ |     ++|++|+++++.+++... .+.+.+       +++....+ +...    
T Consensus         6 ~i~~V~VIGaG~MG~gIA~~la~a-G-----~~V~l~D~~~e~l~~~~~-~i~~~l-------~~~~~~G~-~~~~----   66 (507)
T PRK08268          6 SIATVAVIGAGAMGAGIAQVAAQA-G-----HTVLLYDARAGAAAAARD-GIAARL-------AKLVEKGK-LTAE----   66 (507)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHH-------HHHHHcCC-CCHH----
Confidence            457999999999999999999999 8     999999999987765321 111111       11111111 1000    


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                         .  .             +..+.++..++++++ +.+||+||.|+|..  ..+.++.++..++++   ++++.+.+..
T Consensus        67 ---~--~-------------~~~~~~i~~~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~---~ailasntSt  124 (507)
T PRK08268         67 ---Q--A-------------DAALARLRPVEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSP---DCILATNTSS  124 (507)
T ss_pred             ---H--H-------------HHHHhCeEEeCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence               0  0             011236888889865 67999999999986  466777888887776   6777677766


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcE-EEEcCCCchHHHhccCceeEEEe---CChhhHHHHHHHhCCCCeEEEecC
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENI-LYLGGPNIASEIYNKEYANARIC---GAEKWRKPLAKFLRRPHFTVWDNG  275 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~-~vl~GP~~a~ev~~~~~~~~~~~---~~~~~~~~l~~ll~~~~~~v~~s~  275 (333)
                      +.+.           + +++.+..+..-+ .-..-|....      +-..++.   .+++.++.+..++...+-.+....
T Consensus       125 l~i~-----------~-la~~~~~p~r~~G~hff~Pa~v~------~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~  186 (507)
T PRK08268        125 LSIT-----------A-IAAALKHPERVAGLHFFNPVPLM------KLVEVVSGLATDPAVADALYALARAWGKTPVRAK  186 (507)
T ss_pred             CCHH-----------H-HHhhcCCcccEEEEeecCCcccC------eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEec
Confidence            6653           2 455444321101 1112233221      1111232   356778888888877765555445


Q ss_pred             ChhH
Q 019978          276 DLVT  279 (333)
Q Consensus       276 Di~g  279 (333)
                      |.-|
T Consensus       187 d~pG  190 (507)
T PRK08268        187 DTPG  190 (507)
T ss_pred             CCCC
Confidence            6544

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.92  E-value=2e-08  Score=106.92  Aligned_cols=157  Identities=18%  Similarity=0.172  Sum_probs=99.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      +||+|||+|.||.+++..|... |.   .++|++|+++++.++.+.         +              . +.      
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~-G~---~~~V~~~d~~~~~~~~a~---------~--------------~-g~------   49 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRER-GL---AREVVAVDRRAKSLELAV---------S--------------L-GV------   49 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhc-CC---CCEEEEEECChhHHHHHH---------H--------------C-CC------
Confidence            6899999999999999999988 61   147999999986543211         0              0 00      


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                                             .....++.+++++++|+||+|+|++.+.++++++++++++   ++ +|+...++...
T Consensus        50 -----------------------~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l~~~~~~---~~-ii~d~~svk~~  102 (735)
T PRK14806         50 -----------------------IDRGEEDLAEAVSGADVIVLAVPVLAMEKVLADLKPLLSE---HA-IVTDVGSTKGN  102 (735)
T ss_pred             -----------------------CCcccCCHHHHhcCCCEEEECCCHHHHHHHHHHHHHhcCC---Cc-EEEEcCCCchH
Confidence                                   0112356667788999999999999999999999998875   54 44444444322


Q ss_pred             ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchH-------------HHhccCceeEEEe--CChhhHHHHHHHhCCCC
Q 019978          204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIAS-------------EIYNKEYANARIC--GAEKWRKPLAKFLRRPH  268 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~-------------ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~  268 (333)
                               +.+.+++.++..    .+...|+++.             +...+.++.++..  .+++..+.++++|+..|
T Consensus       103 ---------~~~~l~~~~~~~----~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G  169 (735)
T PRK14806        103 ---------VVDAARAVFGEL----PAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALARVDRLWRAVG  169 (735)
T ss_pred             ---------HHHHHHHhcccc----CCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcC
Confidence                     123355555321    1223344442             1223333333322  34457888999999988


Q ss_pred             eEEEec
Q 019978          269 FTVWDN  274 (333)
Q Consensus       269 ~~v~~s  274 (333)
                      -+++..
T Consensus       170 ~~~~~~  175 (735)
T PRK14806        170 ADVLHM  175 (735)
T ss_pred             CEEEEc
Confidence            766543

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.91  E-value=8.8e-10  Score=92.99  Aligned_cols=98  Identities=26%  Similarity=0.499  Sum_probs=62.2

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ..+||+|||+|.+|++|+..|.++ |     |.|. +|+|+.+..+++.                      ..++     
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~a-g-----~~v~~v~srs~~sa~~a~----------------------~~~~-----   55 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARA-G-----HEVVGVYSRSPASAERAA----------------------AFIG-----   55 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHT-T-----SEEEEESSCHH-HHHHHH----------------------C--T-----
T ss_pred             CccEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEEeCCcccccccc----------------------cccc-----
Confidence            458999999999999999999999 8     8876 4577765433211                      0111     


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhh--hhccCCCCEEEEeee
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY--WKERITVPVIISLAK  198 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~--l~~~~~~~~Ivs~~k  198 (333)
                                                ... ..++++.+.++|++|++||.+.+.+++++|..+  +.+   +++|+.++-
T Consensus        56 --------------------------~~~-~~~~~~~~~~aDlv~iavpDdaI~~va~~La~~~~~~~---g~iVvHtSG  105 (127)
T PF10727_consen   56 --------------------------AGA-ILDLEEILRDADLVFIAVPDDAIAEVAEQLAQYGAWRP---GQIVVHTSG  105 (127)
T ss_dssp             --------------------------T------TTGGGCC-SEEEE-S-CCHHHHHHHHHHCC--S-T---T-EEEES-S
T ss_pred             --------------------------ccc-ccccccccccCCEEEEEechHHHHHHHHHHHHhccCCC---CcEEEECCC
Confidence                                      111 234556788999999999999999999999987  555   678887764


Q ss_pred             cCcc
Q 019978          199 GVEA  202 (333)
Q Consensus       199 Gi~~  202 (333)
                      .++.
T Consensus       106 a~~~  109 (127)
T PF10727_consen  106 ALGS  109 (127)
T ss_dssp             S--G
T ss_pred             CChH
Confidence            4443

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.88  E-value=6.1e-08  Score=95.76  Aligned_cols=149  Identities=23%  Similarity=0.273  Sum_probs=95.4

Q ss_pred             CCCCCceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchh
Q 019978           39 AEGDPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV  117 (333)
Q Consensus        39 ~~~~~~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~  117 (333)
                      .++.+++|+||| +|.||..+|..|.++ |     ++|++|++++.                                  
T Consensus        94 ~~~~~~~I~IiGG~GlmG~slA~~l~~~-G-----~~V~~~d~~~~----------------------------------  133 (374)
T PRK11199         94 LNPDLRPVVIVGGKGQLGRLFAKMLTLS-G-----YQVRILEQDDW----------------------------------  133 (374)
T ss_pred             cCcccceEEEEcCCChhhHHHHHHHHHC-C-----CeEEEeCCCcc----------------------------------
Confidence            344568999999 999999999999999 8     99999998531                                  


Q ss_pred             hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEee
Q 019978          118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA  197 (333)
Q Consensus       118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~  197 (333)
                                                        +++++++.+||+||+|||.....++++++.+ +++   +++|+.++
T Consensus       134 ----------------------------------~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~---~~iv~Dv~  175 (374)
T PRK11199        134 ----------------------------------DRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPE---DCILVDLT  175 (374)
T ss_pred             ----------------------------------hhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCC---CcEEEECC
Confidence                                              0123456789999999999999999999988 776   77777663


Q ss_pred             ecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeC-ChhhHHHHHHHhCCCCeEEEecCC
Q 019978          198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLRRPHFTVWDNGD  276 (333)
Q Consensus       198 kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~-~~~~~~~l~~ll~~~~~~v~~s~D  276 (333)
                      . +..         .+.+.+.+.++.+.....-+.||....  ..+. ..+...+ +++..+.+.+++...|.++...+.
T Consensus       176 S-vK~---------~~~~~~~~~~~~~fvg~HPm~G~~~~~--~~~~-~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~~  242 (374)
T PRK11199        176 S-VKN---------APLQAMLAAHSGPVLGLHPMFGPDVGS--LAKQ-VVVVCDGRQPEAYQWLLEQIQVWGARLHRISA  242 (374)
T ss_pred             C-ccH---------HHHHHHHHhCCCCEEeeCCCCCCCCcc--cCCC-EEEEcCCCCchHHHHHHHHHHHCCCEEEECCH
Confidence            1 111         112233333321100011235554421  1221 1112222 345678889999988888876553


Q ss_pred             hh
Q 019978          277 LV  278 (333)
Q Consensus       277 i~  278 (333)
                      -.
T Consensus       243 ~~  244 (374)
T PRK11199        243 VE  244 (374)
T ss_pred             HH
Confidence            33

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=98.87  E-value=3.6e-08  Score=93.45  Aligned_cols=184  Identities=16%  Similarity=0.169  Sum_probs=112.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      .++|++||.|+||++++..|.++ |     |.|++|+|+.++.+++...                               
T Consensus        35 ~~~iGFIGLG~MG~~M~~nLik~-G-----~kVtV~dr~~~k~~~f~~~-------------------------------   77 (327)
T KOG0409|consen   35 KTRIGFIGLGNMGSAMVSNLIKA-G-----YKVTVYDRTKDKCKEFQEA-------------------------------   77 (327)
T ss_pred             cceeeEEeeccchHHHHHHHHHc-C-----CEEEEEeCcHHHHHHHHHh-------------------------------
Confidence            47999999999999999999999 8     9999999998876542210                               


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHHHHhhhh---ccCCCCEEEEeee
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISRYWK---ERITVPVIISLAK  198 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~~i~~~l~---~~~~~~~Ivs~~k  198 (333)
                                              ..++.+.+.|..+++|+||.+||.. +.++++-.-...+.   +.  ++..|. +.
T Consensus        78 ------------------------Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g--~~~~vD-mS  130 (327)
T KOG0409|consen   78 ------------------------GARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPG--KKATVD-MS  130 (327)
T ss_pred             ------------------------chhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceeeccCC--CceEEe-cc
Confidence                                    2234467888899999999999864 66666644333222   21  122121 11


Q ss_pred             cCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHh--ccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCC
Q 019978          199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY--NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD  276 (333)
Q Consensus       199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~--~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~D  276 (333)
                      .+.++         .+..|++..-.  ....++-.|.....-.  ++..+ ++++++++..+....+|...+-++.+-..
T Consensus       131 Tidp~---------~s~ei~~~i~~--~~~~~vDAPVSGg~~~A~~G~Lt-imagGde~~~~~~~~~~~~mGk~~~~~G~  198 (327)
T KOG0409|consen  131 TIDPD---------TSLEIAKAISN--KGGRFVDAPVSGGVKGAEEGTLT-IMAGGDEALFEAASPVFKLMGKNVVFLGG  198 (327)
T ss_pred             ccCHH---------HHHHHHHHHHh--CCCeEEeccccCCchhhhcCeEE-EEecCcHHHHHHHHHHHHHhcceEEEecc
Confidence            23332         12334444421  1233556665543222  23222 24578888999999999998866665444


Q ss_pred             hhHHHHHHHHHHH-HHH-HHHHHhccCC
Q 019978          277 LVTHEVMGGLKNV-YAI-GAGMVAALTN  302 (333)
Q Consensus       277 i~gve~~~alkNv-~Ai-~~Gi~~gl~~  302 (333)
                      .=.-+-++...|. +++ -.|.++++-+
T Consensus       199 ~GnG~~~Kl~nnm~~g~~M~g~aEal~l  226 (327)
T KOG0409|consen  199 VGNGQAAKLCNNMLLGSSMVGLAEALAL  226 (327)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555565 222 2555555543

>PLN02858 fructose-bisphosphate aldolase

Probab=98.83  E-value=8.5e-08  Score=108.18  Aligned_cols=182  Identities=13%  Similarity=0.078  Sum_probs=114.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      .||++||.|.||..||..|.+. |     |+|++|+|++++++++..                                 
T Consensus         5 ~~IGfIGLG~MG~~mA~~L~~~-G-----~~v~v~dr~~~~~~~l~~---------------------------------   45 (1378)
T PLN02858          5 GVVGFVGLDSLSFELASSLLRS-G-----FKVQAFEISTPLMEKFCE---------------------------------   45 (1378)
T ss_pred             CeEEEEchhHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHH---------------------------------
Confidence            5899999999999999999999 8     999999999876543210                                 


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH---HHHHhhhhccCCCCEEEEeeec
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF---EEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl---~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                            ......+++.+++++||+||+++|.. .+++++   +.+.+.+.+   ++++|.++ .
T Consensus        46 ----------------------~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~---g~iivd~S-T   99 (1378)
T PLN02858         46 ----------------------LGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQK---GAVILIRS-T   99 (1378)
T ss_pred             ----------------------cCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCC---cCEEEECC-C
Confidence                                  02334567888899999999999975 677776   345555555   56777654 3


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH-H-hccCceeEEEeCChhhHHHHHHHhCCCCeEEEe-cCC
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-I-YNKEYANARICGAEKWRKPLAKFLRRPHFTVWD-NGD  276 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e-v-~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~-s~D  276 (333)
                      +.+.+         ++.+.+.+......+.++-.|..... . ..|..+ ++++++++..++++.+|+..+-+++. ..+
T Consensus       100 i~p~~---------~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~-imvGG~~~~~~~~~p~l~~~g~~i~~~~G~  169 (1378)
T PLN02858        100 ILPLQ---------LQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLM-IIASGRSDAITRAQPFLSAMCQKLYTFEGE  169 (1378)
T ss_pred             CCHHH---------HHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeE-EEEcCCHHHHHHHHHHHHHhcCceEEecCC
Confidence            33331         12233323111101223444443221 1 233222 35678888899999999877766653 455


Q ss_pred             hhHHHHHHHHHHHHHH--HHHHHhcc
Q 019978          277 LVTHEVMGGLKNVYAI--GAGMVAAL  300 (333)
Q Consensus       277 i~gve~~~alkNv~Ai--~~Gi~~gl  300 (333)
                      .=.....+.+.|.+..  ..++.+++
T Consensus       170 ~G~g~~~KL~nN~l~~~~~~a~aEAl  195 (1378)
T PLN02858        170 IGAGSKVKMVNELLEGIHLVASAEAM  195 (1378)
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5444677777776332  24444444

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=98.81  E-value=8.5e-08  Score=91.18  Aligned_cols=166  Identities=16%  Similarity=0.225  Sum_probs=102.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +++|+|+|+|.||..||..|.+. |     +.|.+|+++......          ...           ..+ ++     
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~-g-----~~v~i~g~d~~~~~~----------~~a-----------~~l-gv-----   49 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEA-G-----LVVRIIGRDRSAATL----------KAA-----------LEL-GV-----   49 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHc-C-----CeEEEEeecCcHHHH----------HHH-----------hhc-Cc-----
Confidence            57999999999999999999999 8     899999998753211          000           000 00     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCH-HHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNL-QEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~-~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                              .-+.+.+. .+++.++|+||+|||-..+.++++++.+.+++   +++|..++.-  
T Consensus        50 ------------------------~d~~~~~~~~~~~~~aD~VivavPi~~~~~~l~~l~~~l~~---g~iv~Dv~S~--  100 (279)
T COG0287          50 ------------------------IDELTVAGLAEAAAEADLVIVAVPIEATEEVLKELAPHLKK---GAIVTDVGSV--  100 (279)
T ss_pred             ------------------------ccccccchhhhhcccCCEEEEeccHHHHHHHHHHhcccCCC---CCEEEecccc--
Confidence                                    01122232 45677899999999999999999999998887   7777655411  


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCcEE---EEcCCCchHHHhccCceeEEEeC--ChhhHHHHHHHhCCCCeEEEecCC
Q 019978          202 AELEAVPRIITPTQMINRATGVPIENIL---YLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNGD  276 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~---vl~GP~~a~ev~~~~~~~~~~~~--~~~~~~~l~~ll~~~~~~v~~s~D  276 (333)
                              ...+-+.+++..+.. ..+.   -+.||.--....++.....+...  +.+++..+.+++...|-++...+-
T Consensus       101 --------K~~v~~a~~~~~~~~-~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~  171 (279)
T COG0287         101 --------KSSVVEAMEKYLPGD-VRFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLWEALGARLVEMDA  171 (279)
T ss_pred             --------cHHHHHHHHHhccCC-CeeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcCh
Confidence                    112224444444321 1110   12455301122334333333322  346899999999998877775544


Q ss_pred             hhH
Q 019978          277 LVT  279 (333)
Q Consensus       277 i~g  279 (333)
                      -..
T Consensus       172 eeH  174 (279)
T COG0287         172 EEH  174 (279)
T ss_pred             HHH
Confidence            433

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=98.68  E-value=1.2e-06  Score=84.53  Aligned_cols=196  Identities=20%  Similarity=0.276  Sum_probs=116.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ++|+|||.|+||.++|..|.+. |     ++|++|+|.....+.                          ...       
T Consensus        17 KtVGIIG~GsIG~amA~nL~d~-G-----~~ViV~~r~~~s~~~--------------------------A~~-------   57 (335)
T PRK13403         17 KTVAVIGYGSQGHAQAQNLRDS-G-----VEVVVGVRPGKSFEV--------------------------AKA-------   57 (335)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHC-c-----CEEEEEECcchhhHH--------------------------HHH-------
Confidence            7999999999999999999998 8     999999876432110                          000       


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHH-HHHhhhhccCCCCEEEEeeecCcc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~-~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                                +            .+.+ .++++++..||+|++.+|....+.++. .+.+.+++   ++ ++.++-|+..
T Consensus        58 ----------~------------G~~v-~sl~Eaak~ADVV~llLPd~~t~~V~~~eil~~MK~---Ga-iL~f~hgfni  110 (335)
T PRK13403         58 ----------D------------GFEV-MSVSEAVRTAQVVQMLLPDEQQAHVYKAEVEENLRE---GQ-MLLFSHGFNI  110 (335)
T ss_pred             ----------c------------CCEE-CCHHHHHhcCCEEEEeCCChHHHHHHHHHHHhcCCC---CC-EEEECCCcce
Confidence                      0            1222 368889999999999999876677774 57777776   44 5667888876


Q ss_pred             cccCCccCCCHHHHHHhHhCCCCCcEEEE--cCCCchH--HHh--ccCceeEEEeCC-----hhhHHHHHHHhCCC--C-
Q 019978          203 ELEAVPRIITPTQMINRATGVPIENILYL--GGPNIAS--EIY--NKEYANARICGA-----EKWRKPLAKFLRRP--H-  268 (333)
Q Consensus       203 ~~~~~~~~~~~se~i~~~lg~~~~~~~vl--~GP~~a~--ev~--~~~~~~~~~~~~-----~~~~~~l~~ll~~~--~-  268 (333)
                      -.             ....|.....+..+  -||.+..  +..  .|.|+.+.+-.|     .+.+.....-+-+.  | 
T Consensus       111 ~~-------------~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala~a~~iG~~ragv  177 (335)
T PRK13403        111 HF-------------GQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALAYAKGVGCTRAGV  177 (335)
T ss_pred             ec-------------CceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHHHHHHcCCCceeE
Confidence            42             12222222233333  3777743  222  345666543222     13444444444432  2 


Q ss_pred             ----eEEEecCChhHHH--HHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH
Q 019978          269 ----FTVWDNGDLVTHE--VMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM  322 (333)
Q Consensus       269 ----~~v~~s~Di~gve--~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l  322 (333)
                          |+-...+|+.|-+  +||.+.-++-.+.-.+-.-+|   ...-|+ -.+++|++.+
T Consensus       178 ~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy---~pe~Ay-fe~~he~kli  233 (335)
T PRK13403        178 IETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGY---RPEIAY-FECLHELKLI  233 (335)
T ss_pred             EecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCC---CHHHHH-HHHHHHHHHH
Confidence                3334678898865  666655543333333322333   223333 3678888665

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.67  E-value=1.2e-07  Score=88.02  Aligned_cols=164  Identities=16%  Similarity=0.145  Sum_probs=116.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |+|++||+|.|..+++..+... |.... +++..+..++....                         ..+..       
T Consensus         1 ~~~gfigag~ma~ala~g~~~~-Gi~~~-~~i~~s~~~~~~~~-------------------------~~~~~-------   46 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVAS-GIIEA-NRIWASVQTERSLG-------------------------LMFEA-------   46 (267)
T ss_pred             CceeEechhhhHHHHHhccccc-CCCch-hheeeecCchhhhh-------------------------hhhhc-------
Confidence            6899999999999999999888 85544 44444443211000                         00110       


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                                            ..++.+.+..+.++.+|++++++|++.+.+++.++...+..   +.+|+|+..|....
T Consensus        47 ----------------------~g~~~~~~n~~~~~~s~v~~~svKp~~i~~vls~~~~~~~~---~~iivS~aaG~tl~  101 (267)
T KOG3124|consen   47 ----------------------LGVKTVFTNLEVLQASDVVFLSVKPQVIESVLSEIKPKVSK---GKIIVSVAAGKTLS  101 (267)
T ss_pred             ----------------------CCceeeechHHHHhhccceeEeecchhHHHHhhcCcccccc---ceEEEEEeecccHH
Confidence                                  12334334467788999999999999999999999885544   67999999998875


Q ss_pred             ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEe-CChhhHHHHHHHhCCCCeEEEecCChhHH
Q 019978          204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNGDLVTH  280 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~v~~s~Di~gv  280 (333)
                      .            +++.++.+  .-.++.+||++..+..+...+..-+ ...++.+.++.+|+..|+-..+.+|.+.+
T Consensus       102 ~------------l~~~l~~~--~rviRvmpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~~~evpE~~iDa  165 (267)
T KOG3124|consen  102 S------------LESKLSPP--TRVIRVMPNTPSVVGEGASVYAIGCHATNEDLELVEELLSAVGLCEEVPEKCIDA  165 (267)
T ss_pred             H------------HHHhcCCC--CceEEecCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhcCcceeCcHHhhhH
Confidence            2            56667622  2357889999999888866544332 23467799999999999988887776653

>PLN02712 arogenate dehydrogenase

Probab=98.67  E-value=6e-07  Score=94.86  Aligned_cols=156  Identities=14%  Similarity=0.185  Sum_probs=99.6

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ..|||+|||+|.||.++|..|.+. |     ++|.+|+|+.+. +..                          ..     
T Consensus       368 ~~~kIgIIGlG~mG~slA~~L~~~-G-----~~V~~~dr~~~~-~~a--------------------------~~-----  409 (667)
T PLN02712        368 SKLKIAIVGFGNFGQFLAKTMVKQ-G-----HTVLAYSRSDYS-DEA--------------------------QK-----  409 (667)
T ss_pred             CCCEEEEEecCHHHHHHHHHHHHC-c-----CEEEEEECChHH-HHH--------------------------HH-----
Confidence            458999999999999999999988 8     899999998531 110                          00     


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc-CCCEEEEecCchhHHHHHHHHHh-hhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW-DADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~-~aDlIIlaVps~~~~~vl~~i~~-~l~~~~~~~~Ivs~~kG  199 (333)
                          +                    .+...+++++++. .+|+||+|||...+.++++++.. .+++   ++++++++.+
T Consensus       410 ----~--------------------Gv~~~~~~~el~~~~aDvVILavP~~~~~~vi~~l~~~~lk~---g~ivvDv~Sv  462 (667)
T PLN02712        410 ----L--------------------GVSYFSDADDLCEEHPEVILLCTSILSTEKVLKSLPFQRLKR---STLFVDVLSV  462 (667)
T ss_pred             ----c--------------------CCeEeCCHHHHHhcCCCEEEECCChHHHHHHHHHHHHhcCCC---CcEEEECCCc
Confidence                0                    1234467777664 58999999999999999999876 4665   6788887533


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhc-c---Ccee---EEEeCCh---hhHHHHHHHhCCCCe
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN-K---EYAN---ARICGAE---KWRKPLAKFLRRPHF  269 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~-~---~~~~---~~~~~~~---~~~~~l~~ll~~~~~  269 (333)
                      -.          .+.+.+.+.++.. .. .+...|.+..+... |   .+..   ..+.++.   +.++.+.++|...|-
T Consensus       463 K~----------~~~~~~~~~l~~~-~~-~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa  530 (667)
T PLN02712        463 KE----------FPRNLFLQHLPQD-FD-ILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGC  530 (667)
T ss_pred             cH----------HHHHHHHHhccCC-Cc-eEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCC
Confidence            11          1224455655421 11 24456666555431 2   1111   1122222   345666788888887


Q ss_pred             EEEec
Q 019978          270 TVWDN  274 (333)
Q Consensus       270 ~v~~s  274 (333)
                      ++...
T Consensus       531 ~vv~m  535 (667)
T PLN02712        531 RMVEM  535 (667)
T ss_pred             EEEEe
Confidence            77643

>PLN02712 arogenate dehydrogenase

Probab=98.65  E-value=4.2e-07  Score=96.02  Aligned_cols=160  Identities=13%  Similarity=0.143  Sum_probs=99.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +|||+|||+|.||.++|..|.+. |     ++|++|+|+... +.                          ...      
T Consensus        52 ~~kIgIIG~G~mG~slA~~L~~~-G-----~~V~~~dr~~~~-~~--------------------------A~~------   92 (667)
T PLN02712         52 QLKIAIIGFGNYGQFLAKTLISQ-G-----HTVLAHSRSDHS-LA--------------------------ARS------   92 (667)
T ss_pred             CCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEEeCCHHH-HH--------------------------HHH------
Confidence            48999999999999999999988 8     899999998432 10                          000      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCchhHHHHHHHHH-hhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~-~~aDlIIlaVps~~~~~vl~~i~-~~l~~~~~~~~Ivs~~kGi  200 (333)
                         +                    .+...+++++.+ +++|+||+|||...+.++++++. +++++   +++|+.++   
T Consensus        93 ---~--------------------Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l~~~~l~~---g~iVvDv~---  143 (667)
T PLN02712         93 ---L--------------------GVSFFLDPHDLCERHPDVILLCTSIISTENVLKSLPLQRLKR---NTLFVDVL---  143 (667)
T ss_pred             ---c--------------------CCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhhhhhcCCC---CeEEEECC---
Confidence               0                    233456676644 56999999999999999999986 56666   67787763   


Q ss_pred             cccccCCccCCCHHHHHHhHhCCCCCcEEEE----cCCCchHHHhccCceeEE--EeCCh----hhHHHHHHHhCCCCeE
Q 019978          201 EAELEAVPRIITPTQMINRATGVPIENILYL----GGPNIASEIYNKEYANAR--ICGAE----KWRKPLAKFLRRPHFT  270 (333)
Q Consensus       201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl----~GP~~a~ev~~~~~~~~~--~~~~~----~~~~~l~~ll~~~~~~  270 (333)
                      +.       ...+.+.+.+.++.. .. .+.    .||..+.....+.+....  ...++    +.++.+.++|...|.+
T Consensus       144 Sv-------K~~~~~~l~~~l~~~-~~-~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~  214 (667)
T PLN02712        144 SV-------KEFAKNLLLDYLPED-FD-IICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREGCK  214 (667)
T ss_pred             CC-------cHHHHHHHHHhcCCC-Ce-EEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHcCCE
Confidence            11       122334455555421 11 222    345433222333332111  11222    2356667888888888


Q ss_pred             EEecCChhH
Q 019978          271 VWDNGDLVT  279 (333)
Q Consensus       271 v~~s~Di~g  279 (333)
                      +...+--..
T Consensus       215 v~~ms~eeH  223 (667)
T PLN02712        215 MVEMSCTEH  223 (667)
T ss_pred             EEEeCHHHH
Confidence            775543333

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.65  E-value=1.2e-06  Score=86.53  Aligned_cols=146  Identities=11%  Similarity=0.097  Sum_probs=91.8

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ..+||+|||. |.||..||..|.+..|     ++|+.|++..+.                                    
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~-----~~V~g~D~~d~~------------------------------------   41 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQ-----LEVIGHDPADPG------------------------------------   41 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCC-----CEEEEEcCCccc------------------------------------
Confidence            3579999999 9999999999986424     788888874210                                    


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhh---hhccCCCCEEEEee
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY---WKERITVPVIISLA  197 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~---l~~~~~~~~Ivs~~  197 (333)
                                                    .+++++++.+||+||+|||...+.+++++++++   +++   +++|..+.
T Consensus        42 ------------------------------~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~---~~iVtDVg   88 (370)
T PRK08818         42 ------------------------------SLDPATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAA---GQLWLDVT   88 (370)
T ss_pred             ------------------------------cCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCC---CeEEEECC
Confidence                                          123456688999999999999999999999987   566   66665443


Q ss_pred             ecCcccccCCccCCCHHHHHHhHhCCCCCcEE---EEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEec
Q 019978          198 KGVEAELEAVPRIITPTQMINRATGVPIENIL---YLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDN  274 (333)
Q Consensus       198 kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~---vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s  274 (333)
                      .           .+  ..+++...+.. .++.   =+.||... ...++.+..++.....+....+++++...|.++...
T Consensus        89 S-----------vK--~~i~~~~~~~~-~~fVG~HPMaG~E~s-~lf~g~~~iltp~~~~~~~~~v~~l~~~~Ga~v~~~  153 (370)
T PRK08818         89 S-----------IK--QAPVAAMLASQ-AEVVGLHPMTAPPKS-PTLKGRVMVVCEARLQHWSPWVQSLCSALQAECVYA  153 (370)
T ss_pred             C-----------Cc--HHHHHHHHhcC-CCEEeeCCCCCCCCC-cccCCCeEEEeCCCchhHHHHHHHHHHHcCCEEEEc
Confidence            1           11  01122222111 0110   12455433 234455443333333345677889998888777654


Q ss_pred             CC
Q 019978          275 GD  276 (333)
Q Consensus       275 ~D  276 (333)
                      +-
T Consensus       154 ~a  155 (370)
T PRK08818        154 TP  155 (370)
T ss_pred             CH
Confidence            43

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.59  E-value=8.9e-09  Score=93.99  Aligned_cols=163  Identities=19%  Similarity=0.284  Sum_probs=106.5

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .+..|+|||+|-||+.+|+..+.. |     ++|.+++++++.+.+.++     .|.+.   ++|.......-.      
T Consensus        10 ~~~~V~ivGaG~MGSGIAQv~a~s-g-----~~V~l~d~~~~aL~~A~~-----~I~~s---l~rvakKk~~~~------   69 (298)
T KOG2304|consen   10 EIKNVAIVGAGQMGSGIAQVAATS-G-----LNVWLVDANEDALSRATK-----AISSS---LKRVAKKKKADD------   69 (298)
T ss_pred             cccceEEEcccccchhHHHHHHhc-C-----CceEEecCCHHHHHHHHH-----HHHHH---HHHHHhhcccCC------
Confidence            457899999999999999999999 8     999999999988776542     23332   222221111000      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                         +..-+|+..         ..+.+++.+++..+++.++|+||.++-..  ..+.+++++....++   ++++.+.+..
T Consensus        70 ---~~~~~e~v~---------~~l~ri~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~---~~il~tNTSS  134 (298)
T KOG2304|consen   70 ---PVALEEFVD---------DTLDRIKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKS---STILATNTSS  134 (298)
T ss_pred             ---hhhHHHHHH---------HHHHHHHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhccc---ceEEeecccc
Confidence               000011111         23347888999999999999999999764  688999999998887   7777777776


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCc----EEEEcCCCchHHHh
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIEN----ILYLGGPNIASEIY  241 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~----~~vl~GP~~a~ev~  241 (333)
                      +..... ....+.++++..-+|-.| .|    +.++.++.+..+..
T Consensus       135 l~lt~i-a~~~~~~srf~GlHFfNP-vPvMKLvEVir~~~TS~eTf  178 (298)
T KOG2304|consen  135 LSLTDI-ASATQRPSRFAGLHFFNP-VPVMKLVEVIRTDDTSDETF  178 (298)
T ss_pred             eeHHHH-HhhccChhhhceeeccCC-chhHHHhhhhcCCCCCHHHH
Confidence            665421 123455666555444322 12    24667777665544

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.55  E-value=2.2e-06  Score=82.55  Aligned_cols=95  Identities=19%  Similarity=0.134  Sum_probs=69.5

Q ss_pred             ceEEEECCCH--------------------HHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhH
Q 019978           44 LRIVGVGAGA--------------------WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV  103 (333)
Q Consensus        44 ~kI~IIGaG~--------------------mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~  103 (333)
                      |||+|.|+|+                    -|.+||..|+++ |     |+|++|+|+++.++.-..+.           
T Consensus         1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA-G-----heV~V~Drnrsa~e~e~~e~-----------   63 (341)
T TIGR01724         1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA-G-----HDVVLAEPNREFMSDDLWKK-----------   63 (341)
T ss_pred             CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC-C-----CEEEEEeCChhhhhhhhhHH-----------
Confidence            6888888886                    488999999999 8     99999999876432100000           


Q ss_pred             HHHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHHHHh
Q 019978          104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISR  182 (333)
Q Consensus       104 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~~i~~  182 (333)
                                +..                             ....+.+++.++++++|+||+++|.. +++++++.+.+
T Consensus        64 ----------Lae-----------------------------aGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa  104 (341)
T TIGR01724        64 ----------VED-----------------------------AGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIE  104 (341)
T ss_pred             ----------HHH-----------------------------CCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHh
Confidence                      100                             13445677888999999999999976 47888888888


Q ss_pred             hhhccCCCCEEEEee
Q 019978          183 YWKERITVPVIISLA  197 (333)
Q Consensus       183 ~l~~~~~~~~Ivs~~  197 (333)
                      .+++   +++||.++
T Consensus       105 ~L~~---GaIVID~S  116 (341)
T TIGR01724       105 HVPE---NAVICNTC  116 (341)
T ss_pred             cCCC---CCEEEECC
Confidence            7776   67777553

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=98.54  E-value=3.4e-07  Score=89.07  Aligned_cols=92  Identities=17%  Similarity=0.238  Sum_probs=70.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |+|+|||+|.||.++|..|... |     ++|..|+++++...                            .        
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~-G-----~~V~~~d~~~~~~~----------------------------~--------  184 (330)
T PRK12480        147 MTVAIIGTGRIGAATAKIYAGF-G-----ATITAYDAYPNKDL----------------------------D--------  184 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeCChhHhh----------------------------h--------
Confidence            7999999999999999999887 8     99999999864210                            0        


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-H-HHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-T-KEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~-~-~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                             .+...++++++++++|+|++++|... . .-+.+.+...+++   ++++|+++.|-.
T Consensus       185 -----------------------~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~---gavlIN~aRG~~  238 (330)
T PRK12480        185 -----------------------FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKK---GAILVNAARGAV  238 (330)
T ss_pred             -----------------------hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCC---CcEEEEcCCccc
Confidence                                   01123568888999999999999763 3 3344556667776   789999999977


Q ss_pred             cc
Q 019978          202 AE  203 (333)
Q Consensus       202 ~~  203 (333)
                      .+
T Consensus       239 vd  240 (330)
T PRK12480        239 IN  240 (330)
T ss_pred             cC
Confidence            65

>PRK06223 malate dehydrogenase; Reviewed

Probab=98.49  E-value=1.7e-06  Score=82.88  Aligned_cols=105  Identities=16%  Similarity=0.237  Sum_probs=69.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ||||+|||+|.||+.+|..++.. |     + +|.++|++++.++..   .    ..-     ++    .....      
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~-~-----~~ev~L~D~~~~~~~~~---~----~dl-----~~----~~~~~------   53 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALK-E-----LGDVVLFDIVEGVPQGK---A----LDI-----AE----AAPVE------   53 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEEECCCchhHHH---H----HHH-----Hh----hhhhc------
Confidence            58999999999999999999987 6     5 899999988754311   0    000     00    00000      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--------------hhHHHHHHHHHhhhh
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWK  185 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaV--ps--------------~~~~~vl~~i~~~l~  185 (333)
                         ..                  ...++.++|.+ ++.+||+||+++  |.              ..+.++++++.++.+
T Consensus        54 ---~~------------------~~~i~~~~d~~-~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~  111 (307)
T PRK06223         54 ---GF------------------DTKITGTNDYE-DIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAP  111 (307)
T ss_pred             ---CC------------------CcEEEeCCCHH-HHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence               00                  01466667774 589999999986  33              347777777877764


Q ss_pred             ccCCCCEEEEeeecCc
Q 019978          186 ERITVPVIISLAKGVE  201 (333)
Q Consensus       186 ~~~~~~~Ivs~~kGi~  201 (333)
                          +..++..+|-..
T Consensus       112 ----~~~viv~tNP~d  123 (307)
T PRK06223        112 ----DAIVIVVTNPVD  123 (307)
T ss_pred             ----CeEEEEecCcHH
Confidence                456776776443

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=98.49  E-value=1.4e-07  Score=93.41  Aligned_cols=226  Identities=12%  Similarity=0.069  Sum_probs=123.7

Q ss_pred             ceEEEECCCHHHHHH-HHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           44 LRIVGVGAGAWGSVF-TAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        44 ~kI~IIGaG~mG~al-A~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      |||+++|+|+||+++ +..|++. |     ++|++++++++++++++.+++-.+.                ..+..   .
T Consensus         1 mki~~~GaGa~gr~~~~~~l~~~-g-----~~V~~vd~~~~~v~aL~~qglY~v~----------------~~~~~---~   55 (381)
T PRK02318          1 MKAVHFGAGNIGRGFIGKLLADN-G-----FEVTFVDVNQELIDALNKRKSYQVI----------------VVGEN---E   55 (381)
T ss_pred             CceEEECCchhhHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHhcCCCeEEE----------------EecCC---C
Confidence            799999999999855 7788887 7     9999999988887776554321000                11100   0


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEe--cCHHH---HhcCCCEEEEecCchhHHHHHHHHHhhhhccC-----CCCE
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVV--TNLQE---AVWDADIVINGLPSTETKEVFEEISRYWKERI-----TVPV  192 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t--~d~~e---a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~-----~~~~  192 (333)
                      +  .         ..       ...+...  .+.++   .+.++|+|.++|++...+.++..+.+.+.++.     +.-.
T Consensus        56 ~--~---------~~-------i~~v~~~~~~~~~~~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~  117 (381)
T PRK02318         56 Q--V---------ET-------VSNVSAINSADEEAVIEAIAEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLN  117 (381)
T ss_pred             c--E---------EE-------EeeEeeeCCCCHHHHHHHhcCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCE
Confidence            0  0         00       0022222  12122   34588999999999999999999988775421     1126


Q ss_pred             EEEeeecCcccccCCccCCCHHHHH------------HhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHH
Q 019978          193 IISLAKGVEAELEAVPRIITPTQMI------------NRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPL  260 (333)
Q Consensus       193 Ivs~~kGi~~~~~~~~~~~~~se~i------------~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l  260 (333)
                      |++|.||+..+.       .+.+.+            ....+.+ ...+-+.+|...   ..+...  +.+.  +..+.+
T Consensus       118 VlsceN~~~ng~-------~L~~~V~~~~~~~~~~wi~~~~~f~-~t~VDrI~P~~~---~~d~~~--v~~E--~f~~wv  182 (381)
T PRK02318        118 IIACENMIRGTS-------FLKKHVLKALSEDEKAWLEEHVGFV-DSAVDRIVPAQK---NEDPLD--VTVE--PFSEWI  182 (381)
T ss_pred             EEecCChhhHHH-------HHHHHHHHhCCHHHHHHHHhcCCCC-CcHHhcCCCCCC---ccCCcc--cccc--cceEEE
Confidence            899999999752       112222            1222222 112344555221   111000  0000  000000


Q ss_pred             HHHh--CC---CCeEEEecCChhHHHHHHHHHHHHHH-HHH---HHhccCC----CCCccHHHHHHHHHHHHHHH-H-HC
Q 019978          261 AKFL--RR---PHFTVWDNGDLVTHEVMGGLKNVYAI-GAG---MVAALTN----ESATSKSVYFAHCTSEMVVM-H-GM  325 (333)
Q Consensus       261 ~~ll--~~---~~~~v~~s~Di~gve~~~alkNv~Ai-~~G---i~~gl~~----~~~n~~~~l~~~~~~E~~~l-~-~~  325 (333)
                      .+-+  ..   +...+.+++|+...+|.+...|-..- .++   .+.|...    ..+.....++.+.+.|+..+ . +.
T Consensus       183 iE~~~~~~~~p~~~~v~~~~dv~~~~~~Kl~~ln~~ha~~A~~g~l~G~~tv~ea~~d~~~~~~v~~l~~E~~~v~~~~~  262 (381)
T PRK02318        183 VDKTQFKGALPKIKGMEYVDNLMPFIERKLFTVNTGHATTAYLGYLKGYKTIREAILDPSIRAVVKGALEESGAVLIKKY  262 (381)
T ss_pred             EecccccCCCCCCCCcEEccCccHHHHHHHHhccHHHHHHHHHHHHcCcchHHHHHcCHHHHHHHHHHHHHHHhhcCCcC
Confidence            0000  00   11267789999999999976554333 233   3333321    12334568899999999888 3 55


Q ss_pred             CC
Q 019978          326 GR  327 (333)
Q Consensus       326 G~  327 (333)
                      |-
T Consensus       263 g~  264 (381)
T PRK02318        263 GF  264 (381)
T ss_pred             Cc
Confidence            63

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.46  E-value=1.9e-06  Score=87.38  Aligned_cols=175  Identities=14%  Similarity=0.058  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcCCcccchhhhh
Q 019978           54 WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILK  133 (333)
Q Consensus        54 mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~  133 (333)
                      ||..||..|+++ |     ++|.+|+|++++.+++..        ...             ++                 
T Consensus         1 MG~~mA~nL~~~-G-----~~V~v~nrt~~~~~~l~~--------~~g-------------~~-----------------   36 (459)
T PRK09287          1 MGKNLALNIASH-G-----YTVAVYNRTPEKTDEFLA--------EEG-------------KG-----------------   36 (459)
T ss_pred             CcHHHHHHHHhC-C-----CeEEEECCCHHHHHHHHH--------hhC-------------CC-----------------
Confidence            899999999999 8     999999999987653211        000             00                 


Q ss_pred             ccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCch-hHHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCcc
Q 019978          134 DGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPR  209 (333)
Q Consensus       134 ~~~~~~~~~~~~~~i~~t~d~~ea~~~---aDlIIlaVps~-~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~  209 (333)
                                  ..+....++++++..   +|+||++||.. .++++++.+.+++.+   +.+||..++.....+     
T Consensus        37 ------------~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l~~---GdiiID~gn~~~~~t-----   96 (459)
T PRK09287         37 ------------KKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLLEK---GDIIIDGGNSNYKDT-----   96 (459)
T ss_pred             ------------CCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcCCC---CCEEEECCCCCHHHH-----
Confidence                        034566778887764   89999999976 799999999998887   678888776544432     


Q ss_pred             CCCHHHHHHhHhCCCCCcEEEEcCCCchH-HHhccCceeEEEeCChhhHHHHHHHhCCCCeEE-------EecCChhHHH
Q 019978          210 IITPTQMINRATGVPIENILYLGGPNIAS-EIYNKEYANARICGAEKWRKPLAKFLRRPHFTV-------WDNGDLVTHE  281 (333)
Q Consensus       210 ~~~~se~i~~~lg~~~~~~~vl~GP~~a~-ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v-------~~s~Di~gve  281 (333)
                           ....+.+..  ..+.++..|...- +.++..+ .++++++++..++++.+|+..+-++       .+..+.=.-.
T Consensus        97 -----~~~~~~l~~--~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh  168 (459)
T PRK09287         97 -----IRREKELAE--KGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGH  168 (459)
T ss_pred             -----HHHHHHHHh--cCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHH
Confidence                 112222211  1122444444432 2233335 4567888888888888888644332       2333332235


Q ss_pred             HHHHHHHH--HHHHHHHHhcc
Q 019978          282 VMGGLKNV--YAIGAGMVAAL  300 (333)
Q Consensus       282 ~~~alkNv--~Ai~~Gi~~gl  300 (333)
                      ..+...|.  |+...++++++
T Consensus       169 ~vKmvhN~ie~~~mq~iaEa~  189 (459)
T PRK09287        169 YVKMVHNGIEYGDMQLIAEAY  189 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            66677775  34445555554

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.41  E-value=1.7e-06  Score=75.68  Aligned_cols=93  Identities=35%  Similarity=0.477  Sum_probs=65.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc-chhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      ++|+|||.|+.|.+-|..|.++ |     .+|++..|+.. ..++.+                                 
T Consensus         5 k~IAViGyGsQG~a~AlNLrDS-G-----~~V~Vglr~~s~s~~~A~---------------------------------   45 (165)
T PF07991_consen    5 KTIAVIGYGSQGHAHALNLRDS-G-----VNVIVGLREGSASWEKAK---------------------------------   45 (165)
T ss_dssp             SEEEEES-SHHHHHHHHHHHHC-C------EEEEEE-TTCHHHHHHH---------------------------------
T ss_pred             CEEEEECCChHHHHHHHHHHhC-C-----CCEEEEecCCCcCHHHHH---------------------------------
Confidence            6999999999999999999999 8     99999988875 222110                                 


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHH-HHHHhhhhccCCCCEEEEeeecCc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVF-EEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                .+||            ++ .+.+|+++.+|+|++.+|.....+++ ++|.+.+++   ++ .+.++-|+.
T Consensus        46 ----------~~Gf------------~v-~~~~eAv~~aDvV~~L~PD~~q~~vy~~~I~p~l~~---G~-~L~fahGfn   98 (165)
T PF07991_consen   46 ----------ADGF------------EV-MSVAEAVKKADVVMLLLPDEVQPEVYEEEIAPNLKP---GA-TLVFAHGFN   98 (165)
T ss_dssp             ----------HTT-------------EC-CEHHHHHHC-SEEEE-S-HHHHHHHHHHHHHHHS-T---T--EEEESSSHH
T ss_pred             ----------HCCC------------ee-ccHHHHHhhCCEEEEeCChHHHHHHHHHHHHhhCCC---CC-EEEeCCcch
Confidence                      0222            22 35678899999999999999999998 889999997   55 445676766


Q ss_pred             c
Q 019978          202 A  202 (333)
Q Consensus       202 ~  202 (333)
                      .
T Consensus        99 i   99 (165)
T PF07991_consen   99 I   99 (165)
T ss_dssp             H
T ss_pred             h
Confidence            4

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=98.37  E-value=3.7e-06  Score=80.97  Aligned_cols=104  Identities=15%  Similarity=0.148  Sum_probs=70.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      |||+|||+|.||+.+|..++.. |     + +|.++|++++..+.   +.    ..             .+.+...    
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~-g-----~~~VvlvDi~~~l~~g---~a----~d-------------~~~~~~~----   51 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEK-E-----LADLVLLDVVEGIPQG---KA----LD-------------MYEASPV----   51 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHc-C-----CCeEEEEeCCCChhHH---HH----Hh-------------hhhhhhc----
Confidence            6999999999999999999998 7     5 89999997653221   00    00             0111000    


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------hhHHHHHHHHHhhhhc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKE  186 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps----------------~~~~~vl~~i~~~l~~  186 (333)
                      . ..                  ..+++.++|.++ +.+||+||+++..                ..++++.+++.++.+ 
T Consensus        52 ~-~~------------------~~~i~~t~d~~~-~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p-  110 (305)
T TIGR01763        52 G-GF------------------DTKVTGTNNYAD-TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP-  110 (305)
T ss_pred             c-CC------------------CcEEEecCCHHH-hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-
Confidence            0 00                  025777788876 7899999999872                246667777777643 


Q ss_pred             cCCCCEEEEeeecCc
Q 019978          187 RITVPVIISLAKGVE  201 (333)
Q Consensus       187 ~~~~~~Ivs~~kGi~  201 (333)
                         +..+|.++|-..
T Consensus       111 ---~~~iIv~tNP~d  122 (305)
T TIGR01763       111 ---NPIIVVVSNPLD  122 (305)
T ss_pred             ---CeEEEEecCcHH
Confidence               567888887544

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=98.35  E-value=2.1e-06  Score=86.18  Aligned_cols=78  Identities=21%  Similarity=0.174  Sum_probs=54.8

Q ss_pred             ceEEEECCCHHHHHHHH--HHH----HhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchh
Q 019978           44 LRIVGVGAGAWGSVFTA--MLQ----DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV  117 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~--~La----~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~  117 (333)
                      +||+|||+|+||.+++.  .++    .+ |     ++|.+||++++.++.+...     +.             ++++..
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~-g-----~eV~L~Did~e~l~~~~~~-----~~-------------~~~~~~   56 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELS-G-----STIALMDIDEERLETVEIL-----AK-------------KIVEEL   56 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCC-C-----CEEEEECCCHHHHHHHHHH-----HH-------------HHHHhc
Confidence            58999999999999776  343    33 4     8999999999876543211     10             111110


Q ss_pred             hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc
Q 019978          118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS  170 (333)
Q Consensus       118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps  170 (333)
                             ..                  ..++..++|+++++++||+||+++++
T Consensus        57 -------~~------------------~~~I~~ttD~~eal~~AD~Vi~ai~~   84 (423)
T cd05297          57 -------GA------------------PLKIEATTDRREALDGADFVINTIQV   84 (423)
T ss_pred             -------CC------------------CeEEEEeCCHHHHhcCCCEEEEeeEe
Confidence                   00                  02578899999999999999999995

linked to 3D####ucture

>PRK08605 D-lactate dehydrogenase; Validated

Probab=98.32  E-value=2.5e-06  Score=83.01  Aligned_cols=95  Identities=20%  Similarity=0.321  Sum_probs=67.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||+|.||.++|..|++.+|     .+|..|+++.+..                            ...      
T Consensus       146 g~~VgIIG~G~IG~~vA~~L~~~~g-----~~V~~~d~~~~~~----------------------------~~~------  186 (332)
T PRK08605        146 DLKVAVIGTGRIGLAVAKIFAKGYG-----SDVVAYDPFPNAK----------------------------AAT------  186 (332)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC-----CEEEEECCCccHh----------------------------HHh------
Confidence            3799999999999999999954325     7888887765311                            000      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHH--HHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVF--EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl--~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                              .+...++++++++++|+|++++|.......+  +...+.+++   ++++|.+++|.
T Consensus       187 ------------------------~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~---gailIN~sRG~  239 (332)
T PRK08605        187 ------------------------YVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKK---GAVFVNCARGS  239 (332)
T ss_pred             ------------------------hccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCC---CcEEEECCCCc
Confidence                                    1223357888899999999999986533333  334455676   78999999997


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ..+
T Consensus       240 ~vd  242 (332)
T PRK08605        240 LVD  242 (332)
T ss_pred             ccC
Confidence            765

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.32  E-value=1.7e-05  Score=76.69  Aligned_cols=174  Identities=17%  Similarity=0.121  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhh--hhHHHHHhhhhhHHHHhhhcccccchhhhhhcCCcccchhh
Q 019978           54 WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATA--EHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEI  131 (333)
Q Consensus        54 mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~--~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~  131 (333)
                      ||+.||..++.+ |     ++|++|+++++..++++.  +...+.+...   +++....+. +..-       .  +   
T Consensus         1 MG~giA~~~a~~-G-----~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~g~-~~~~-------~--~---   58 (314)
T PRK08269          1 MGQGIALAFAFA-G-----HDVTLIDFKPRDAAGWRALDAEARAEIERT---LAALVALGR-IDAA-------Q--A---   58 (314)
T ss_pred             CcHHHHHHHHhC-C-----CeEEEEeCCcccchhhHHHHHHHHHHHHHH---HHHHHHcCC-CChh-------h--H---
Confidence            799999999999 8     999999999964321000  0000011110   111111111 1100       0  0   


Q ss_pred             hhccccccCCCCCCCCeEEecC--HHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeecCcccccCC
Q 019978          132 LKDGFCLNMIDTPLCPLKVVTN--LQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVEAELEAV  207 (333)
Q Consensus       132 ~~~~~~~~~~~~~~~~i~~t~d--~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~  207 (333)
                                +..+.+++++++  +.+++++||+||.+||..  ....++.++.+.+++   ++++.|.+.++...    
T Consensus        59 ----------~~~~~~i~~~~~~~~~~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~---~~ilaSntS~~~~~----  121 (314)
T PRK08269         59 ----------DAVLARIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDA---DAIIASTTSTFLVT----  121 (314)
T ss_pred             ----------HHHHhCeEeecCcchHHHhccCCEEEECCcCCHHHHHHHHHHHHhhCCC---CcEEEEccccCCHH----
Confidence                      011236777654  667889999999999986  588888999998887   78887777766653    


Q ss_pred             ccCCCHHHHHHhHhCCCCCcEE-EEcCCCchHHHhccCceeEEE--eCChhhHHHHHHHhCCCCeEEEecCChhH
Q 019978          208 PRIITPTQMINRATGVPIENIL-YLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGDLVT  279 (333)
Q Consensus       208 ~~~~~~se~i~~~lg~~~~~~~-vl~GP~~a~ev~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~v~~s~Di~g  279 (333)
                              .|.+.+..+..-+. -..-|.+...     ...++.  ..+++..+.+..+|...+..+....|.-|
T Consensus       122 --------~la~~~~~p~r~~g~Hf~~Pp~~~~-----lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~G  183 (314)
T PRK08269        122 --------DLQRHVAHPERFLNAHWLNPAYLMP-----LVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSPG  183 (314)
T ss_pred             --------HHHhhcCCcccEEEEecCCccccCc-----eEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCC
Confidence                    24454433211111 1112221110     011111  23556778888888877766655566545

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=98.28  E-value=7.4e-06  Score=79.44  Aligned_cols=39  Identities=13%  Similarity=0.141  Sum_probs=33.4

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      ..+||+|||+|.||+.+|..++.. |.    .+|.|+|++++.+
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~~-gl----~~i~LvDi~~~~~   43 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVLK-NL----GDVVLFDIVKNIP   43 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-CC----CeEEEEeCCCchh
Confidence            447999999999999999999887 72    2799999999864

>PTZ00117 malate dehydrogenase; Provisional

Probab=98.18  E-value=1.9e-05  Score=76.47  Aligned_cols=105  Identities=14%  Similarity=0.224  Sum_probs=69.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      .+||+|||+|.+|..+|..++.. |.    .++.|+|++++.++..       .+.-.+           ... .     
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~~-~~----~~l~L~Di~~~~~~g~-------~lDl~~-----------~~~-~-----   55 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQK-NL----GDVVLYDVIKGVPQGK-------ALDLKH-----------FST-L-----   55 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHC-CC----CeEEEEECCCccchhH-------HHHHhh-----------hcc-c-----
Confidence            47999999999999999999887 62    4799999998764321       011110           000 0     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--------------hhHHHHHHHHHhhhhc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWKE  186 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaV--ps--------------~~~~~vl~~i~~~l~~  186 (333)
                         ..                ....+..++|.+ ++.+||+||++.  |.              ..+.++++++.++.+ 
T Consensus        56 ---~~----------------~~~~i~~~~d~~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p-  114 (319)
T PTZ00117         56 ---VG----------------SNINILGTNNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCP-  114 (319)
T ss_pred             ---cC----------------CCeEEEeCCCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-
Confidence               00                001455667877 689999999988  33              346677777777754 


Q ss_pred             cCCCCEEEEeeecC
Q 019978          187 RITVPVIISLAKGV  200 (333)
Q Consensus       187 ~~~~~~Ivs~~kGi  200 (333)
                         +..++..+|-.
T Consensus       115 ---~a~vivvsNP~  125 (319)
T PTZ00117        115 ---NAFVICVTNPL  125 (319)
T ss_pred             ---CeEEEEecChH
Confidence               45666666644

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.14  E-value=1.5e-05  Score=80.00  Aligned_cols=100  Identities=27%  Similarity=0.352  Sum_probs=71.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ++|+|||.|+.|.+-|..|.+. |     ++|++--|... ++.          ++            ...+..      
T Consensus        37 KtIaIIGyGSqG~AqAlNLrdS-G-----vnVvvglr~~~-id~----------~~------------~s~~kA------   81 (487)
T PRK05225         37 KKIVIVGCGAQGLNQGLNMRDS-G-----LDISYALRKEA-IAE----------KR------------ASWRKA------   81 (487)
T ss_pred             CEEEEEccCHHHHHHhCCCccc-c-----ceeEEeccccc-ccc----------cc------------chHHHH------
Confidence            7999999999999999999988 8     88887666541 110          00            000000      


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                         .     .+||            .+ .+.++++..||+|++.+|......+.+++.+++++   ++ .+.++-|+...
T Consensus        82 ---~-----~dGF------------~v-~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~---Ga-~L~fsHGFni~  136 (487)
T PRK05225         82 ---T-----ENGF------------KV-GTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQ---GA-ALGYSHGFNIV  136 (487)
T ss_pred             ---H-----hcCC------------cc-CCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCC---CC-EEEecCCceee
Confidence               0     0222            22 45788999999999999999888888999999987   44 55677787754

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.12  E-value=2.2e-05  Score=72.73  Aligned_cols=147  Identities=16%  Similarity=0.138  Sum_probs=93.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |+|+.||.|.||..+...|.+. |     |+|+.|+++++.++++..++                               
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~-g-----hdvV~yD~n~~av~~~~~~g-------------------------------   43 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDG-G-----HDVVGYDVNQTAVEELKDEG-------------------------------   43 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhC-C-----CeEEEEcCCHHHHHHHHhcC-------------------------------
Confidence            7899999999999999999999 8     99999999998765432111                               


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHH---HhcCCCEEEEecCch-hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE---AVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~e---a~~~aDlIIlaVps~-~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                              .+..+++++   -+.....|.+.||.. .+.++++++++.+..   +.+||.--|.
T Consensus        44 ------------------------a~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~la~~L~~---GDivIDGGNS   96 (300)
T COG1023          44 ------------------------ATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDLAPLLSA---GDIVIDGGNS   96 (300)
T ss_pred             ------------------------CccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHHHhhcCC---CCEEEECCcc
Confidence                                    111122332   345678999999987 899999999999987   5677765544


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCC
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRR  266 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~  266 (333)
                      -..++        . +.-++..... ..+. =.|.+-.....+.-++ .++.++++..+++..+|..
T Consensus        97 ~y~Ds--------~-rr~~~l~~kg-i~fl-D~GTSGG~~G~~~G~~-lMiGG~~~a~~~~~pif~~  151 (300)
T COG1023          97 NYKDS--------L-RRAKLLAEKG-IHFL-DVGTSGGVWGAERGYC-LMIGGDEEAVERLEPIFKA  151 (300)
T ss_pred             chHHH--------H-HHHHHHHhcC-CeEE-eccCCCCchhhhcCce-EEecCcHHHHHHHHHHHHh
Confidence            33321        0 1111111111 1121 1233322222222234 3567788888888888875

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=98.10  E-value=5.3e-05  Score=63.36  Aligned_cols=122  Identities=19%  Similarity=0.180  Sum_probs=73.8

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      |||+|+|+ |.||..++..+.+..+     +++. .++++++...             +           +....+.   
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~-----~~lv~~v~~~~~~~~-------------g-----------~d~g~~~---   48 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPG-----FELVGAVDRKPSAKV-------------G-----------KDVGELA---   48 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTT-----EEEEEEEETTTSTTT-------------T-----------SBCHHHC---
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCC-----cEEEEEEecCCcccc-------------c-----------chhhhhh---
Confidence            79999999 9999999999988524     6744 5677662211             0           0011100   


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                       +  .                 ....+.+++|+++.++.+|++|-++-+....+.++...++      +..+|+.+.|+.
T Consensus        49 -~--~-----------------~~~~~~v~~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~------g~~~ViGTTG~~  102 (124)
T PF01113_consen   49 -G--I-----------------GPLGVPVTDDLEELLEEADVVIDFTNPDAVYDNLEYALKH------GVPLVIGTTGFS  102 (124)
T ss_dssp             -T--S-----------------ST-SSBEBS-HHHHTTH-SEEEEES-HHHHHHHHHHHHHH------T-EEEEE-SSSH
T ss_pred             -C--c-----------------CCcccccchhHHHhcccCCEEEEcCChHHhHHHHHHHHhC------CCCEEEECCCCC
Confidence             0  0                 0125678899999999999999999776666666665543      467888888987


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCc
Q 019978          202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNI  236 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~  236 (333)
                      .+.         .+.+++.-.    ...++..|||
T Consensus       103 ~~~---------~~~l~~~a~----~~~vl~a~Nf  124 (124)
T PF01113_consen  103 DEQ---------IDELEELAK----KIPVLIAPNF  124 (124)
T ss_dssp             HHH---------HHHHHHHTT----TSEEEE-SSS
T ss_pred             HHH---------HHHHHHHhc----cCCEEEeCCC
Confidence            652         133444321    1457777775

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.06  E-value=2.6e-05  Score=66.73  Aligned_cols=39  Identities=21%  Similarity=0.333  Sum_probs=33.2

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      |||+|||+ |.+|+++|..|... +..   .++.|+|++++.++
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~-~l~---~ei~L~D~~~~~~~   40 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQ-GLA---DEIVLIDINEDKAE   40 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHT-TTS---SEEEEEESSHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhC-CCC---CceEEeccCcccce
Confidence            79999999 99999999999988 621   47999999987543

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=98.06  E-value=3.1e-05  Score=74.16  Aligned_cols=34  Identities=18%  Similarity=0.170  Sum_probs=30.3

Q ss_pred             EEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcch
Q 019978           46 IVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSV   85 (333)
Q Consensus        46 I~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~   85 (333)
                      |+|||+|.||+.+|..++.. |     . +|.++|++++.+
T Consensus         1 I~IIGaG~vG~~ia~~la~~-~-----l~eV~L~Di~e~~~   35 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALK-E-----LGDVVLLDIVEGLP   35 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhC-C-----CcEEEEEeCCCcHH
Confidence            68999999999999999988 6     5 999999998643

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.06  E-value=2.3e-05  Score=73.88  Aligned_cols=82  Identities=22%  Similarity=0.242  Sum_probs=59.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCee-EEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ||||+|||+|.||..++..+.+. + .  +.+ +.+|++++++++++.         +                .     
T Consensus         1 mmrIgIIG~G~iG~~ia~~l~~~-~-~--~~elv~v~d~~~~~a~~~a---------~----------------~-----   46 (265)
T PRK13304          1 MLKIGIVGCGAIASLITKAILSG-R-I--NAELYAFYDRNLEKAENLA---------S----------------K-----   46 (265)
T ss_pred             CCEEEEECccHHHHHHHHHHHcC-C-C--CeEEEEEECCCHHHHHHHH---------H----------------h-----
Confidence            48999999999999999998765 2 0  144 557888876543210         0                0     


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHh
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                          +                    .....+++++.+.++|+|++|+|+....+++.++..
T Consensus        47 ----~--------------------~~~~~~~~~ell~~~DvVvi~a~~~~~~~~~~~al~   83 (265)
T PRK13304         47 ----T--------------------GAKACLSIDELVEDVDLVVECASVNAVEEVVPKSLE   83 (265)
T ss_pred             ----c--------------------CCeeECCHHHHhcCCCEEEEcCChHHHHHHHHHHHH
Confidence                0                    123456788877899999999999988888877654

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=98.05  E-value=6.3e-05  Score=70.60  Aligned_cols=106  Identities=23%  Similarity=0.277  Sum_probs=70.8

Q ss_pred             EEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcCC
Q 019978           46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR  124 (333)
Q Consensus        46 I~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~  124 (333)
                      |+|||+ |.||..++..|+.. |.+.. .+|.++|+++++++....+            +++...   ...         
T Consensus         1 I~IIGagG~vG~~ia~~l~~~-~~~~~-~el~L~D~~~~~l~~~~~d------------l~~~~~---~~~---------   54 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADG-SVLLA-IELVLYDIDEEKLKGVAMD------------LQDAVE---PLA---------   54 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhC-CCCcc-eEEEEEeCCcccchHHHHH------------HHHhhh---hcc---------
Confidence            689999 99999999999987 52111 5899999998776532211            111000   000         


Q ss_pred             cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------hhHHHHHHHHHhhhhccC
Q 019978          125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKERI  188 (333)
Q Consensus       125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps----------------~~~~~vl~~i~~~l~~~~  188 (333)
                                          ..++..++|+.+++++||+||++.-.                ..++++++++.++.+   
T Consensus        55 --------------------~~~i~~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p---  111 (263)
T cd00650          55 --------------------DIKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSP---  111 (263)
T ss_pred             --------------------CcEEEECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC---
Confidence                                02577788888889999999996522                247777777777664   


Q ss_pred             CCCEEEEeeecCc
Q 019978          189 TVPVIISLAKGVE  201 (333)
Q Consensus       189 ~~~~Ivs~~kGi~  201 (333)
                       +..++..+|-..
T Consensus       112 -~a~~i~~tNP~d  123 (263)
T cd00650         112 -DAWIIVVSNPVD  123 (263)
T ss_pred             -CeEEEEecCcHH
Confidence             567777776544

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.04  E-value=3e-05  Score=73.42  Aligned_cols=83  Identities=22%  Similarity=0.269  Sum_probs=58.4

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHh-cCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDS-YGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~-~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      .++||+|||+|.||..++..|.+. .+     +++. +|+|++++.+++.         +             .+.    
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~-----~el~aV~dr~~~~a~~~a---------~-------------~~g----   53 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPG-----LTLSAVAVRDPQRHADFI---------W-------------GLR----   53 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCC-----eEEEEEECCCHHHHHHHH---------H-------------hcC----
Confidence            458999999999999999999762 13     6765 7888876543210         0             000    


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHh
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                                                 .....+++++.+.++|+|++|+|.....++......
T Consensus        54 ---------------------------~~~~~~~~eell~~~D~Vvi~tp~~~h~e~~~~aL~   89 (271)
T PRK13302         54 ---------------------------RPPPVVPLDQLATHADIVVEAAPASVLRAIVEPVLA   89 (271)
T ss_pred             ---------------------------CCcccCCHHHHhcCCCEEEECCCcHHHHHHHHHHHH
Confidence                                       012346677777889999999999988888766543

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=98.01  E-value=0.00013  Score=70.14  Aligned_cols=194  Identities=14%  Similarity=0.123  Sum_probs=120.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      ++||.-||||.+|..-...+|...    |...|++++.+..++.+++.+.                 -|.|.|++.    
T Consensus         1 ~~kiccigagyvggptcavia~kc----p~i~vtvvd~s~~ri~~wnsd~-----------------lpiyepgld----   55 (481)
T KOG2666|consen    1 MVKICCIGAGYVGGPTCAVIALKC----PDIEVTVVDISVPRINAWNSDK-----------------LPIYEPGLD----   55 (481)
T ss_pred             CceEEEecCcccCCcchheeeecC----CceEEEEEecCchHhhcccCCC-----------------CcccCCCHH----
Confidence            479999999999999988887763    2267999999998877766443                 256777653    


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc---------------hhHHHHHHHHHhhhhcc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS---------------TETKEVFEEISRYWKER  187 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps---------------~~~~~vl~~i~~~l~~~  187 (333)
                             |+++.  |.+      .++.+++|.+.++..+|+|++.|..               .+.++..+.|+.+-.. 
T Consensus        56 -------evv~~--crg------knlffstdiekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~-  119 (481)
T KOG2666|consen   56 -------EVVKQ--CRG------KNLFFSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVS-  119 (481)
T ss_pred             -------HHHHH--hcC------CceeeecchHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccC-
Confidence                   23322  111      2688999999999999999998743               2577777777766443 


Q ss_pred             CCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCC--CCCcEEEEcCCCchHHHhc--c--CceeEEEeCCh-----hh
Q 019978          188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGV--PIENILYLGGPNIASEIYN--K--EYANARICGAE-----KW  256 (333)
Q Consensus       188 ~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~--~~~~~~vl~GP~~a~ev~~--~--~~~~~~~~~~~-----~~  256 (333)
                        +++++  -|...+-        ...|-|...+..  +...+-+++.|.|..|...  .  .|--+.+++.+     ..
T Consensus       120 --~kivv--ekstvpv--------~aaesi~~il~~n~~~i~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~a  187 (481)
T KOG2666|consen  120 --DKIVV--EKSTVPV--------KAAESIEKILNHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQA  187 (481)
T ss_pred             --CeEEE--eeccccc--------hHHHHHHHHHhcCCCCceeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHH
Confidence              44333  3333321        223556666632  2345779999999765332  1  13334554432     34


Q ss_pred             HHHHHHHhCCC-CeEEEecCChhHHHHHHHHHHH
Q 019978          257 RKPLAKFLRRP-HFTVWDNGDLVTHEVMGGLKNV  289 (333)
Q Consensus       257 ~~~l~~ll~~~-~~~v~~s~Di~gve~~~alkNv  289 (333)
                      ++.+..+++.= ...-.++.+....|+.+...|.
T Consensus       188 v~~l~~vyehwvp~~~iittntwsselsklaana  221 (481)
T KOG2666|consen  188 VQALKDVYEHWVPREQIITTNTWSSELSKLAANA  221 (481)
T ss_pred             HHHHHHHHHhhCcccceeeccccHHHHHHHHHHH
Confidence            55555665531 1122356666677777766664

>PRK15076 alpha-galactosidase; Provisional

Probab=97.99  E-value=4.5e-05  Score=76.89  Aligned_cols=82  Identities=21%  Similarity=0.182  Sum_probs=52.9

Q ss_pred             CceEEEECCCHHHHHHHH--HHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTA--MLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~--~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ++||+|||+|++|.+.+.  .++.. ..+.. .+|.|+|+++++++....     .+..             .....   
T Consensus         1 ~~KIaIIGaGsvg~~~~~~~~i~~~-~~l~~-~evvLvDid~er~~~~~~-----l~~~-------------~~~~~---   57 (431)
T PRK15076          1 MPKITFIGAGSTVFTKNLLGDILSV-PALRD-AEIALMDIDPERLEESEI-----VARK-------------LAESL---   57 (431)
T ss_pred             CcEEEEECCCHHHhHHHHHHHHhhC-ccCCC-CEEEEECCCHHHHHHHHH-----HHHH-------------HHHhc---
Confidence            479999999999977766  55522 11221 689999999987653211     0111             01100   


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP  169 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVp  169 (333)
                          ..                  ..++..++|..+++++||+||+++-
T Consensus        58 ----~~------------------~~~i~~ttD~~eal~dADfVv~ti~   84 (431)
T PRK15076         58 ----GA------------------SAKITATTDRREALQGADYVINAIQ   84 (431)
T ss_pred             ----CC------------------CeEEEEECCHHHHhCCCCEEeEeee
Confidence                00                  0257888998899999999999763

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=97.98  E-value=0.00044  Score=66.09  Aligned_cols=164  Identities=28%  Similarity=0.331  Sum_probs=103.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc-hhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~-~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      ++|+|||.|+=|.+=|..|.++ |     .+|++--|.... .++..                                 
T Consensus        19 K~iaIIGYGsQG~ahalNLRDS-G-----lnViiGlr~g~~s~~kA~---------------------------------   59 (338)
T COG0059          19 KKVAIIGYGSQGHAQALNLRDS-G-----LNVIIGLRKGSSSWKKAK---------------------------------   59 (338)
T ss_pred             CeEEEEecChHHHHHHhhhhhc-C-----CcEEEEecCCchhHHHHH---------------------------------
Confidence            5999999999999999999999 8     898877776532 11100                                 


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHH-HHHhhhhccCCCCEEEEeeecCc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~-~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                .+||            ++ -+.+|+++.||+|++-+|.....++++ +|.|.+++   +. .+.++-|+.
T Consensus        60 ----------~dGf------------~V-~~v~ea~k~ADvim~L~PDe~q~~vy~~~I~p~Lk~---G~-aL~FaHGfN  112 (338)
T COG0059          60 ----------EDGF------------KV-YTVEEAAKRADVVMILLPDEQQKEVYEKEIAPNLKE---GA-ALGFAHGFN  112 (338)
T ss_pred             ----------hcCC------------Ee-ecHHHHhhcCCEEEEeCchhhHHHHHHHHhhhhhcC---Cc-eEEeccccc
Confidence                      0222            22 346788999999999999999999998 89999987   44 566777877


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCcEEEE--cCCCchH--HHh--ccCceeEEEeCC-----hhhHHHHHHHhCC--CC
Q 019978          202 AELEAVPRIITPTQMINRATGVPIENILYL--GGPNIAS--EIY--NKEYANARICGA-----EKWRKPLAKFLRR--PH  268 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl--~GP~~a~--ev~--~~~~~~~~~~~~-----~~~~~~l~~ll~~--~~  268 (333)
                      .-.             ...-+.....+..+  -||.+..  +-.  .|.|+.+.+-.|     .+.+..+..-.-.  .|
T Consensus       113 ihf-------------~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG~a~~~Ala~AkgiGg~RaG  179 (338)
T COG0059         113 IHF-------------GLIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASGKALDIALAYAKGIGGTRAG  179 (338)
T ss_pred             eec-------------ceecCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEeCCCchHHHHHHHHHHhcCCCccc
Confidence            642             11112111222222  3777743  222  244666533221     1344444444432  22


Q ss_pred             -----eEEEecCChhHHH--HHHHH
Q 019978          269 -----FTVWDNGDLVTHE--VMGGL  286 (333)
Q Consensus       269 -----~~v~~s~Di~gve--~~~al  286 (333)
                           |+-...+|+.|-+  +||.+
T Consensus       180 vieTTFkeEtetDLfGEQ~vLcGgl  204 (338)
T COG0059         180 VIETTFKEETETDLFGEQAVLCGGL  204 (338)
T ss_pred             eEeeeeHHhhhcccccchhhhhhHH
Confidence                 4445788999966  45443

>PLN02602 lactate dehydrogenase

Probab=97.96  E-value=0.00011  Score=72.20  Aligned_cols=67  Identities=9%  Similarity=0.095  Sum_probs=45.8

Q ss_pred             cccccccccchHHhhhHHHHhhccCCCCC-----ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           15 NGLIHHTNGSLEERLDELRRLMGKAEGDP-----LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ++-+|-.||-+- +...+.-||-.++.+|     +||+|||+|.+|+++|..|+.. +..   .++.|+|++++.++
T Consensus         5 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~m~~~~~~KI~IIGaG~VG~~~a~~l~~~-~l~---~el~LiDi~~~~~~   76 (350)
T PLN02602          5 SSASSLGPGGLD-LSQAFFKPIHNSSPPSPTRRHTKVSVVGVGNVGMAIAQTILTQ-DLA---DELALVDVNPDKLR   76 (350)
T ss_pred             ccccccccchhh-hhhhhhhcccccccccccCCCCEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCCCchhh
Confidence            344455665555 4444444444444423     6999999999999999999877 621   37999999887653

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=97.95  E-value=6.7e-05  Score=72.56  Aligned_cols=95  Identities=26%  Similarity=0.388  Sum_probs=68.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|+||..+|..|..- |     .+|..|++..+....                          ..       
T Consensus       136 g~tvgIvG~G~IG~~vA~~l~af-G-----~~V~~~~~~~~~~~~--------------------------~~-------  176 (312)
T PRK15469        136 DFTIGILGAGVLGSKVAQSLQTW-G-----FPLRCWSRSRKSWPG--------------------------VQ-------  176 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCCCCCCC--------------------------ce-------
Confidence            37999999999999999999876 8     899999986532100                          00       


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~-~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                              ......++++++.+||+|++++|.. .++.++. +....+++   ++++|.+.-|-
T Consensus       177 ------------------------~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~  229 (312)
T PRK15469        177 ------------------------SFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPD---GAYLLNLARGV  229 (312)
T ss_pred             ------------------------eecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCC---CcEEEECCCcc
Confidence                                    0111246888999999999999964 5666653 34445666   78999998885


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ...
T Consensus       230 vVd  232 (312)
T PRK15469        230 HVV  232 (312)
T ss_pred             ccC
Confidence            544

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.91  E-value=4.9e-05  Score=74.75  Aligned_cols=154  Identities=14%  Similarity=0.116  Sum_probs=98.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      +.|++||.|.||+-||..++++ |     +.|.+|+|+.++.++.        ++++.           ..+.+      
T Consensus         4 ~~iGviGLaVMG~NLaLNi~~~-G-----~~VavyNRt~~ktd~f--------~~~~~-----------~~k~i------   52 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNIADH-G-----YTVAVYNRTTEKTDEF--------LAERA-----------KGKNI------   52 (473)
T ss_pred             cceeeEehhhhhHHHHHHHHhc-C-----ceEEEEeCCHHHHHHH--------HHhCc-----------cCCCc------
Confidence            5799999999999999999999 8     9999999999877642        22210           01100      


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-hhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps-~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                                            .+.+...++-..++...-|++.|++ ..+++++++|.|++.+   +-+||.--|....
T Consensus        53 ----------------------~~~~sieefV~~Le~PRkI~lMVkAG~~VD~~I~~L~p~Le~---gDIiIDGGNs~y~  107 (473)
T COG0362          53 ----------------------VPAYSIEEFVASLEKPRKILLMVKAGTPVDAVIEQLLPLLEK---GDIIIDGGNSHYK  107 (473)
T ss_pred             ----------------------cccCcHHHHHHHhcCCceEEEEEecCCcHHHHHHHHHhhcCC---CCEEEeCCCcCCc
Confidence                                  0112223344457788999999998 4689999999999988   6688887776665


Q ss_pred             cccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhC
Q 019978          203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLR  265 (333)
Q Consensus       203 ~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~  265 (333)
                      ++     ..+    ..++.... . ..+=.|-+-.+|.+...|+. +..++++.-+.++.+|.
T Consensus       108 DT-----~RR----~~eL~~~G-i-~FvG~GVSGGEeGA~~GPSi-MpGG~~eay~~v~pil~  158 (473)
T COG0362         108 DT-----IRR----NKELSEKG-I-LFVGMGVSGGEEGARHGPSI-MPGGQKEAYELVAPILT  158 (473)
T ss_pred             hH-----HHH----HHHHHhcC-C-eEEeccccccccccccCCCc-CCCCCHHHHHHHHHHHH
Confidence            53     111    12211111 1 11223555555665555653 55666666666666665

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=97.87  E-value=0.00011  Score=59.96  Aligned_cols=94  Identities=19%  Similarity=0.218  Sum_probs=64.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +||+|||+|.||......+.+. .   ++.++. +++++++..++..         +                       
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~-~---~~~~v~~v~d~~~~~~~~~~---------~-----------------------   44 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRS-S---PDFEVVAVCDPDPERAEAFA---------E-----------------------   44 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHT-T---TTEEEEEEECSSHHHHHHHH---------H-----------------------
T ss_pred             CEEEEECCcHHHHHHHHHHHhc-C---CCcEEEEEEeCCHHHHHHHH---------H-----------------------
Confidence            5899999999999999888776 2   125654 7788876543210         0                       


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                        .                    ..+...+|.++.+.  +.|+|++++|+....+.+......      +..| .+-|-+
T Consensus        45 --~--------------------~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~------g~~v-~~EKP~   95 (120)
T PF01408_consen   45 --K--------------------YGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAKKALEA------GKHV-LVEKPL   95 (120)
T ss_dssp             --H--------------------TTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHT------TSEE-EEESSS
T ss_pred             --H--------------------hcccchhHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHc------CCEE-EEEcCC
Confidence              0                    02346678888776  789999999999888888876652      3433 456655


Q ss_pred             cc
Q 019978          201 EA  202 (333)
Q Consensus       201 ~~  202 (333)
                      ..
T Consensus        96 ~~   97 (120)
T PF01408_consen   96 AL   97 (120)
T ss_dssp             SS
T ss_pred             cC
Confidence            54

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=97.83  E-value=0.0005  Score=64.38  Aligned_cols=169  Identities=18%  Similarity=0.151  Sum_probs=103.4

Q ss_pred             CceEEEECCCH--------------------HHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhh
Q 019978           43 PLRIVGVGAGA--------------------WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSRED  102 (333)
Q Consensus        43 ~~kI~IIGaG~--------------------mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~  102 (333)
                      +|||+|.|+|+                    -|+.+|-.+|.. |     |+|.|.+.+.+..+.   +|          
T Consensus         1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA-G-----HDVVLaePn~d~~dd---~~----------   61 (340)
T COG4007           1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA-G-----HDVVLAEPNRDIMDD---EH----------   61 (340)
T ss_pred             CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc-C-----CcEEeecCCccccCH---HH----------
Confidence            48899999986                    378899999999 8     999999998875432   11          


Q ss_pred             HHHHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHHHH
Q 019978          103 VLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEIS  181 (333)
Q Consensus       103 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~~i~  181 (333)
                                 .+.++    +                      ..+++++|-.++++.+++.++.+|-. .+-.+++.|.
T Consensus        62 -----------w~~ve----d----------------------AGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~  104 (340)
T COG4007          62 -----------WKRVE----D----------------------AGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIAREIL  104 (340)
T ss_pred             -----------HHHHH----h----------------------cCcEEecCchhhhhcceEEEEecccchhhHHHHHHHH
Confidence                       11111    1                      26778777778899999999999987 8999999999


Q ss_pred             hhhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCC--------CCcEEEEcCCCchHHHhccCceeEEEeCC
Q 019978          182 RYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP--------IENILYLGGPNIASEIYNKEYANARICGA  253 (333)
Q Consensus       182 ~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~--------~~~~~vl~GP~~a~ev~~~~~~~~~~~~~  253 (333)
                      .++++   +.+|+. +=.+++-.        +-..++..+-.+        .+|..+=.-|++-.-+..+..+...--..
T Consensus       105 ~hvpE---gAVicn-TCT~sp~v--------Ly~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~yviagr~t~g~elAT  172 (340)
T COG4007         105 EHVPE---GAVICN-TCTVSPVV--------LYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELAT  172 (340)
T ss_pred             hhCcC---CcEecc-cccCchhH--------HHHHhhhhhcCchhhcCccccCCCCCCCCCCCceEEEeccCCCceeecc
Confidence            99987   665553 22222210        011122222111        12222212233221111122221111234


Q ss_pred             hhhHHHHHHHhCCCCeEEEec-CChhH
Q 019978          254 EKWRKPLAKFLRRPHFTVWDN-GDLVT  279 (333)
Q Consensus       254 ~~~~~~l~~ll~~~~~~v~~s-~Di~g  279 (333)
                      +++.++..++.++.|..+|.. .|++.
T Consensus       173 eEQi~r~velaes~Gk~~yv~padv~s  199 (340)
T COG4007         173 EEQIERCVELAESTGKEVYVLPADVVS  199 (340)
T ss_pred             HHHHHHHHHHHHhcCCceEecCHHHHH
Confidence            678999999999998887754 45444

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=97.83  E-value=0.00017  Score=69.47  Aligned_cols=39  Identities=23%  Similarity=0.192  Sum_probs=33.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      |||+|||+|.+|+++|..|+.. |..   ++|.++++++++++
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~-g~~---~ev~l~D~~~~~~~   39 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLR-GLA---SEIVLVDINKAKAE   39 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCC---CEEEEEECCchhhh
Confidence            6999999999999999999988 621   47999999987543

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK13243 glyoxylate reductase; Reviewed

Probab=97.83  E-value=6.6e-05  Score=73.16  Aligned_cols=95  Identities=23%  Similarity=0.279  Sum_probs=68.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|.||..+|..|... |     .+|..|+|+.+...                           ...      
T Consensus       150 gktvgIiG~G~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~~---------------------------~~~------  190 (333)
T PRK13243        150 GKTIGIIGFGRIGQAVARRAKGF-G-----MRILYYSRTRKPEA---------------------------EKE------  190 (333)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCChhh---------------------------HHH------
Confidence            37999999999999999999877 7     89999999764210                           000      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                         .                    .... .++++.+..||+|++++|.. .+..++ ++....+++   ++++|.++-|-
T Consensus       191 ---~--------------------~~~~-~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~---ga~lIN~aRg~  243 (333)
T PRK13243        191 ---L--------------------GAEY-RPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKP---TAILVNTARGK  243 (333)
T ss_pred             ---c--------------------CCEe-cCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCC---CeEEEECcCch
Confidence               0                    1222 46888899999999999964 455555 345555676   78899988775


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ..+
T Consensus       244 ~vd  246 (333)
T PRK13243        244 VVD  246 (333)
T ss_pred             hcC
Confidence            544

>PRK07574 formate dehydrogenase; Provisional

Probab=97.82  E-value=0.00012  Score=72.76  Aligned_cols=96  Identities=20%  Similarity=0.200  Sum_probs=69.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ++|+|||.|+||..+|..|..- |     .+|..|+|.....+.                          ...       
T Consensus       193 ktVGIvG~G~IG~~vA~~l~~f-G-----~~V~~~dr~~~~~~~--------------------------~~~-------  233 (385)
T PRK07574        193 MTVGIVGAGRIGLAVLRRLKPF-D-----VKLHYTDRHRLPEEV--------------------------EQE-------  233 (385)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCchhh--------------------------Hhh-------
Confidence            7999999999999999999876 7     899999987632110                          000       


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHhhhhccCCCCEEEEeeecCc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~-~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                            ..+....++++++..||+|++++|-. .++.++. +....+++   ++++|+++-|=.
T Consensus       234 ----------------------~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~i  288 (385)
T PRK07574        234 ----------------------LGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKR---GSYLVNTARGKI  288 (385)
T ss_pred             ----------------------cCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCC---CcEEEECCCCch
Confidence                                  02333357889999999999999954 5666663 34445666   789999887744


Q ss_pred             cc
Q 019978          202 AE  203 (333)
Q Consensus       202 ~~  203 (333)
                      .+
T Consensus       289 VD  290 (385)
T PRK07574        289 VD  290 (385)
T ss_pred             hh
Confidence            43

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.80  E-value=0.00022  Score=68.99  Aligned_cols=42  Identities=24%  Similarity=0.261  Sum_probs=34.6

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ...+||+|||+|.+|+++|..|+.. |..   .++.|+|++++.++
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~~-~~~---~el~L~D~~~~~~~   45 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVNQ-GIA---DELVIIDINKEKAE   45 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCCchhH
Confidence            3457999999999999999999988 721   27999999887654

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.78  E-value=0.0002  Score=68.76  Aligned_cols=39  Identities=23%  Similarity=0.294  Sum_probs=33.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +||+|||+|.+|+++|..|+.. |..   ++|.++++++++++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~-g~~---~ei~l~D~~~~~~~   39 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQ-GIA---DELVLIDINEEKAE   39 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCcchhh
Confidence            4899999999999999999988 621   48999999988654

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PLN03139 formate dehydrogenase; Provisional

Probab=97.76  E-value=0.00015  Score=72.04  Aligned_cols=97  Identities=22%  Similarity=0.216  Sum_probs=69.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|+||..+|..|..- |     .+|..|++.....+.                          ...      
T Consensus       199 gktVGIVG~G~IG~~vA~~L~af-G-----~~V~~~d~~~~~~~~--------------------------~~~------  240 (386)
T PLN03139        199 GKTVGTVGAGRIGRLLLQRLKPF-N-----CNLLYHDRLKMDPEL--------------------------EKE------  240 (386)
T ss_pred             CCEEEEEeecHHHHHHHHHHHHC-C-----CEEEEECCCCcchhh--------------------------Hhh------
Confidence            37999999999999999999876 7     899999987521110                          000      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                             ..+...+++++.+..+|+|++++|.. .+..++ +++...+++   ++++|.++-|=
T Consensus       241 -----------------------~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~  294 (386)
T PLN03139        241 -----------------------TGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKK---GVLIVNNARGA  294 (386)
T ss_pred             -----------------------cCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCC---CeEEEECCCCc
Confidence                                   02333457889999999999999953 566665 334455666   78999988774


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ..+
T Consensus       295 iVD  297 (386)
T PLN03139        295 IMD  297 (386)
T ss_pred             hhh
Confidence            443

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.74  E-value=8.4e-05  Score=63.39  Aligned_cols=40  Identities=20%  Similarity=0.220  Sum_probs=33.6

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ..++|+|+|+|.||.+++..|++. |    .++|++|+|+++.++
T Consensus        18 ~~~~i~iiG~G~~g~~~a~~l~~~-g----~~~v~v~~r~~~~~~   57 (155)
T cd01065          18 KGKKVLILGAGGAARAVAYALAEL-G----AAKIVIVNRTLEKAK   57 (155)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC-C----CCEEEEEcCCHHHHH
Confidence            347999999999999999999887 5    168999999986554

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=97.73  E-value=3.9e-05  Score=70.55  Aligned_cols=119  Identities=23%  Similarity=0.303  Sum_probs=82.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      .||+|+|.|-.|+++|..||.. |     ++|.+||..++++..    .|..+-   + .++++..++ .+.+       
T Consensus         4 ~ki~ivgSgl~g~~WAmlFAs~-G-----yqVqlYDI~e~Ql~~----ALen~~---K-el~~Lee~g-~lrG-------   61 (313)
T KOG2305|consen    4 GKIAIVGSGLVGSSWAMLFASS-G-----YQVQLYDILEKQLQT----ALENVE---K-ELRKLEEHG-LLRG-------   61 (313)
T ss_pred             cceeEeecccccchHHHHHhcc-C-----ceEEEeeccHHHHHH----HHHHHH---H-HHHHHHHhh-hhcc-------
Confidence            5999999999999999999999 8     999999999877542    111111   1 133332222 1221       


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                       .+.++|             ++..|..+++++|++++|=.|-.|+|..  ....+++++...+.+   .+++-|.+..+.
T Consensus        62 -nlsa~e-------------qla~is~t~~l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~---~tIlaSSTSt~m  124 (313)
T KOG2305|consen   62 -NLSADE-------------QLALISGTTSLNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADP---TTILASSTSTFM  124 (313)
T ss_pred             -CccHHH-------------HHHHHhCCccHHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCC---ceEEeccccccC
Confidence             233322             3346778899999999999999999997  578888999888876   454444443333

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.72  E-value=0.00011  Score=65.14  Aligned_cols=97  Identities=23%  Similarity=0.257  Sum_probs=64.1

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .-++|+|||.|.+|..+|..+..- |     .+|..|+|.......                          ...     
T Consensus        35 ~g~tvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~~~~--------------------------~~~-----   77 (178)
T PF02826_consen   35 RGKTVGIIGYGRIGRAVARRLKAF-G-----MRVIGYDRSPKPEEG--------------------------ADE-----   77 (178)
T ss_dssp             TTSEEEEESTSHHHHHHHHHHHHT-T------EEEEEESSCHHHHH--------------------------HHH-----
T ss_pred             CCCEEEEEEEcCCcCeEeeeeecC-C-----ceeEEecccCChhhh--------------------------ccc-----
Confidence            348999999999999999999876 8     899999999853210                          000     


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                              ..+ ...++++.+..||+|++++|.. ....++ ++.-..+++   ++++|+++.|
T Consensus        78 ------------------------~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~---ga~lvN~aRG  129 (178)
T PF02826_consen   78 ------------------------FGV-EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKP---GAVLVNVARG  129 (178)
T ss_dssp             ------------------------TTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTT---TEEEEESSSG
T ss_pred             ------------------------ccc-eeeehhhhcchhhhhhhhhccccccceeeeeeeeecccc---ceEEEeccch
Confidence                                    022 2357889999999999999953 233332 222233455   7889998877


Q ss_pred             Cccc
Q 019978          200 VEAE  203 (333)
Q Consensus       200 i~~~  203 (333)
                      =..+
T Consensus       130 ~~vd  133 (178)
T PF02826_consen  130 ELVD  133 (178)
T ss_dssp             GGB-
T ss_pred             hhhh
Confidence            4443

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK06444 prephenate dehydrogenase; Provisional

Probab=97.72  E-value=7.2e-05  Score=67.78  Aligned_cols=23  Identities=30%  Similarity=0.632  Sum_probs=21.6

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcC
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYG   67 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G   67 (333)
                      |||+|||+ |.||..++..|.++ |
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~-g   24 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDN-G   24 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhC-C
Confidence            69999999 99999999999888 7

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.69  E-value=9.4e-05  Score=70.69  Aligned_cols=36  Identities=14%  Similarity=0.190  Sum_probs=32.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      -++|+|+|+|.+|.++|..|... |     .+|++++|++++
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~-G-----~~V~v~~R~~~~  186 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSAL-G-----ARVFVGARSSAD  186 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHC-C-----CEEEEEeCCHHH
Confidence            36999999999999999999988 8     899999998754

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK06436 glycerate dehydrogenase; Provisional

Probab=97.65  E-value=0.00028  Score=68.04  Aligned_cols=92  Identities=18%  Similarity=0.277  Sum_probs=64.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|+||..+|..+..- |     .+|..|+|+... +                             +.     
T Consensus       122 gktvgIiG~G~IG~~vA~~l~af-G-----~~V~~~~r~~~~-~-----------------------------~~-----  160 (303)
T PRK06436        122 NKSLGILGYGGIGRRVALLAKAF-G-----MNIYAYTRSYVN-D-----------------------------GI-----  160 (303)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCcc-c-----------------------------Cc-----
Confidence            37999999999999999987655 7     899999986421 0                             00     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~-~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                              . ....++++.+..||+|++++|.. .++.++. +....+++   ++++|.++-|=
T Consensus       161 ------------------------~-~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~---ga~lIN~sRG~  212 (303)
T PRK06436        161 ------------------------S-SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRK---GLAIINVARAD  212 (303)
T ss_pred             ------------------------c-cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCC---CeEEEECCCcc
Confidence                                    0 01246788889999999999964 4554442 23344566   78899888774


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ...
T Consensus       213 ~vd  215 (303)
T PRK06436        213 VVD  215 (303)
T ss_pred             ccC
Confidence            443

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=97.64  E-value=0.00063  Score=63.83  Aligned_cols=106  Identities=19%  Similarity=0.228  Sum_probs=62.9

Q ss_pred             HHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcE---EEE
Q 019978          155 QEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI---LYL  231 (333)
Q Consensus       155 ~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~---~vl  231 (333)
                      .++++++|+||+|||...+.++++++.+++++   +++|+.++ ++-         ..+-+.+++.++.. ..+   -=+
T Consensus        40 ~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~---~~iv~Dv~-SvK---------~~~~~~~~~~~~~~-~~~v~~HPM  105 (258)
T PF02153_consen   40 IEAVEDADLVVLAVPVSAIEDVLEEIAPYLKP---GAIVTDVG-SVK---------APIVEAMERLLPEG-VRFVGGHPM  105 (258)
T ss_dssp             HHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-T---TSEEEE---S-C---------HHHHHHHHHHHTSS-GEEEEEEES
T ss_pred             HhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCC---CcEEEEeC-CCC---------HHHHHHHHHhcCcc-cceeecCCC
Confidence            46789999999999999999999999999887   77776553 211         12334556666511 111   123


Q ss_pred             cCC-----CchH-HHhccCceeEEEeC--ChhhHHHHHHHhCCCCeEEEec
Q 019978          232 GGP-----NIAS-EIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDN  274 (333)
Q Consensus       232 ~GP-----~~a~-ev~~~~~~~~~~~~--~~~~~~~l~~ll~~~~~~v~~s  274 (333)
                      .||     ..+. +..++.+..++...  +.+.++.+++++...|.++...
T Consensus       106 ~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~  156 (258)
T PF02153_consen  106 AGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEM  156 (258)
T ss_dssp             CSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE-
T ss_pred             CCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEc
Confidence            455     2221 33345555444332  3467899999999888888754

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=97.62  E-value=0.00055  Score=66.38  Aligned_cols=171  Identities=11%  Similarity=0.095  Sum_probs=102.8

Q ss_pred             chHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhH
Q 019978           24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV  103 (333)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~  103 (333)
                      ++..-|.++..--.|.+  ..+|+|||-|+||..+|..|.+. |     |.|...+|++  .+.+.         +    
T Consensus        35 ~i~d~~~~~~s~~~~k~--tl~IaIIGfGnmGqflAetli~a-G-----h~li~hsRsd--yssaa---------~----   91 (480)
T KOG2380|consen   35 QIFDYMVSEDSIEQWKA--TLVIAIIGFGNMGQFLAETLIDA-G-----HGLICHSRSD--YSSAA---------E----   91 (480)
T ss_pred             hhhhcccCcchhhhccc--ceEEEEEecCcHHHHHHHHHHhc-C-----ceeEecCcch--hHHHH---------H----
Confidence            34444444443333332  46999999999999999999999 8     9999999986  22211         1    


Q ss_pred             HHHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhh
Q 019978          104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY  183 (333)
Q Consensus       104 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~  183 (333)
                              +|-..                              ..+...|+  .-+..|+|++||..-.++.+++..-+.
T Consensus        92 --------~yg~~------------------------------~ft~lhdl--cerhpDvvLlctsilsiekilatypfq  131 (480)
T KOG2380|consen   92 --------KYGSA------------------------------KFTLLHDL--CERHPDVVLLCTSILSIEKILATYPFQ  131 (480)
T ss_pred             --------Hhccc------------------------------ccccHHHH--HhcCCCEEEEEehhhhHHHHHHhcCch
Confidence                    01000                              11112232  225789999999999999999988765


Q ss_pred             -hhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCc--EEEEcCCCchHHHhccCceeEE-E-eC----Ch
Q 019978          184 -WKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN--ILYLGGPNIASEIYNKEYANAR-I-CG----AE  254 (333)
Q Consensus       184 -l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~--~~vl~GP~~a~ev~~~~~~~~~-~-~~----~~  254 (333)
                       ++.   +++++..+.--.+          .-+.+.+.+|....-  .--+.||.....-.+|.|-... . .+    .+
T Consensus       132 rlrr---gtlfvdvlSvKef----------ek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~  198 (480)
T KOG2380|consen  132 RLRR---GTLFVDVLSVKEF----------EKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRP  198 (480)
T ss_pred             hhcc---ceeEeeeeecchh----------HHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccch
Confidence             554   6666654422111          224556667643111  1234678754444555554322 1 22    25


Q ss_pred             hhHHHHHHHhCCCCeE
Q 019978          255 KWRKPLAKFLRRPHFT  270 (333)
Q Consensus       255 ~~~~~l~~ll~~~~~~  270 (333)
                      +..+.+-++|.+.+-+
T Consensus       199 ercE~fleIf~cegck  214 (480)
T KOG2380|consen  199 ERCEFFLEIFACEGCK  214 (480)
T ss_pred             HHHHHHHHHHHhcCCe
Confidence            6788888888887643

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.62  E-value=0.00015  Score=70.04  Aligned_cols=94  Identities=23%  Similarity=0.284  Sum_probs=62.0

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .+..+|+|||+|.||...+..+....+    ..+|++|+|++++++++..     .+.+              . +    
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~----~~~V~V~~Rs~~~a~~~a~-----~~~~--------------~-g----  174 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRP----IKQVRVWGRDPAKAEALAA-----ELRA--------------Q-G----  174 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCC----CCEEEEEcCCHHHHHHHHH-----HHHh--------------c-C----
Confidence            456799999999999999986654212    1689999999877653211     0000              0 0    


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEE
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVII  194 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Iv  194 (333)
                                               ..+.+..++++++.+||+|+.++++.  ..++..  ..+++   ++.|.
T Consensus       175 -------------------------~~~~~~~~~~~av~~aDIVi~aT~s~--~pvl~~--~~l~~---g~~i~  216 (314)
T PRK06141        175 -------------------------FDAEVVTDLEAAVRQADIISCATLST--EPLVRG--EWLKP---GTHLD  216 (314)
T ss_pred             -------------------------CceEEeCCHHHHHhcCCEEEEeeCCC--CCEecH--HHcCC---CCEEE
Confidence                                     02445678888899999999999987  333322  34555   56443

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.61  E-value=0.00012  Score=62.06  Aligned_cols=40  Identities=25%  Similarity=0.280  Sum_probs=34.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      ..++.|||+|-+|.+++..|+.. |.    .+|++++|+.+++++
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~-g~----~~i~i~nRt~~ra~~   51 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAAL-GA----KEITIVNRTPERAEA   51 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHT-TS----SEEEEEESSHHHHHH
T ss_pred             CCEEEEECCHHHHHHHHHHHHHc-CC----CEEEEEECCHHHHHH
Confidence            36999999999999999999998 82    359999999887654

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.61  E-value=0.00022  Score=68.71  Aligned_cols=97  Identities=21%  Similarity=0.243  Sum_probs=63.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      .++|+|||+|.||..++..|... |    .++|++++|++++++++..        +              +..      
T Consensus       178 ~~~V~ViGaG~iG~~~a~~L~~~-g----~~~V~v~~r~~~ra~~la~--------~--------------~g~------  224 (311)
T cd05213         178 GKKVLVIGAGEMGELAAKHLAAK-G----VAEITIANRTYERAEELAK--------E--------------LGG------  224 (311)
T ss_pred             CCEEEEECcHHHHHHHHHHHHHc-C----CCEEEEEeCCHHHHHHHHH--------H--------------cCC------
Confidence            47999999999999999999875 4    1689999999875432210        0              000      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                              .....+++.+++.++|+||.|+++......++.+......  ++.+++.++.
T Consensus       225 ------------------------~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~--~~~~viDlav  274 (311)
T cd05213         225 ------------------------NAVPLDELLELLNEADVVISATGAPHYAKIVERAMKKRSG--KPRLIVDLAV  274 (311)
T ss_pred             ------------------------eEEeHHHHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCC--CCeEEEEeCC
Confidence                                    1111235667788999999999988775555544332211  1456666653

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=97.59  E-value=0.0007  Score=65.50  Aligned_cols=39  Identities=13%  Similarity=0.132  Sum_probs=32.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +||+|||+|.+|+++|..|+.. |..   .++.|+|++++.++
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~-~~~---~el~LiD~~~~~~~   42 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAK-GLA---DELVLVDVVEDKLK   42 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCccHHH
Confidence            6999999999999999999887 621   47999999887543

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=97.58  E-value=0.00059  Score=65.84  Aligned_cols=35  Identities=26%  Similarity=0.426  Sum_probs=29.8

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      |||+|+|+ |..|..++..|+.. |..   .+|+++++++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~-g~~---~~v~lvd~~~   36 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKE-DVV---KEINLISRPK   36 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhC-CCC---CEEEEEECcc
Confidence            79999998 99999999999988 721   2599999965

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=97.55  E-value=0.00023  Score=73.54  Aligned_cols=95  Identities=22%  Similarity=0.268  Sum_probs=67.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ++|+|||.|.||..+|..+..- |     .+|..|++.... +.                          ...       
T Consensus       139 ktvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~-~~--------------------------~~~-------  178 (525)
T TIGR01327       139 KTLGVIGLGRIGSIVAKRAKAF-G-----MKVLAYDPYISP-ER--------------------------AEQ-------  178 (525)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCh-hH--------------------------HHh-------
Confidence            7999999999999999999876 7     899999885321 10                          000       


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecCc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                        +                    .+...+++++.+..||+|++++|.. .++.++ ++....+++   ++++|.++-|=.
T Consensus       179 --~--------------------g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~~  233 (525)
T TIGR01327       179 --L--------------------GVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKK---GVIIVNCARGGI  233 (525)
T ss_pred             --c--------------------CCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCC---CeEEEEcCCCce
Confidence              0                    2333457889999999999999965 555555 233335666   788999887744


Q ss_pred             cc
Q 019978          202 AE  203 (333)
Q Consensus       202 ~~  203 (333)
                      .+
T Consensus       234 vd  235 (525)
T TIGR01327       234 ID  235 (525)
T ss_pred             eC
Confidence            43

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.54  E-value=0.00086  Score=55.56  Aligned_cols=99  Identities=19%  Similarity=0.183  Sum_probs=61.9

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeE-EEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           45 RIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        45 kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      ||+|+| .|++|..+...|.+. -    ..++ .+++++.+.-+.+.         ..         .+ ...+.     
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~h-p----~~e~~~~~~~~~~~g~~~~---------~~---------~~-~~~~~-----   51 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEH-P----DFELVALVSSSRSAGKPLS---------EV---------FP-HPKGF-----   51 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-S----TEEEEEEEESTTTTTSBHH---------HT---------TG-GGTTT-----
T ss_pred             CEEEECCCCHHHHHHHHHHhcC-C----CccEEEeeeeccccCCeee---------hh---------cc-ccccc-----
Confidence            799999 799999999999986 2    1554 45566552222111         10         00 01100     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEec-CHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVT-NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~-d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                             ..+.+.+ +.+ .+.++|+||+|+|.....++...+.   +.   +..||.++.-+.
T Consensus        52 -----------------------~~~~~~~~~~~-~~~~~Dvvf~a~~~~~~~~~~~~~~---~~---g~~ViD~s~~~R  101 (121)
T PF01118_consen   52 -----------------------EDLSVEDADPE-ELSDVDVVFLALPHGASKELAPKLL---KA---GIKVIDLSGDFR  101 (121)
T ss_dssp             -----------------------EEEBEEETSGH-HHTTESEEEE-SCHHHHHHHHHHHH---HT---TSEEEESSSTTT
T ss_pred             -----------------------cceeEeecchh-HhhcCCEEEecCchhHHHHHHHHHh---hC---CcEEEeCCHHHh
Confidence                                   0223333 444 4689999999999999999888874   34   678888875554


Q ss_pred             c
Q 019978          202 A  202 (333)
Q Consensus       202 ~  202 (333)
                      .
T Consensus       102 ~  102 (121)
T PF01118_consen  102 L  102 (121)
T ss_dssp             T
T ss_pred             C
Confidence            3

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=97.52  E-value=0.00052  Score=64.47  Aligned_cols=95  Identities=18%  Similarity=0.231  Sum_probs=64.3

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      +|||+|+|+ |.||..++..+.+. .    +.++. +++++++....                         . .     
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~-~----~~elvav~d~~~~~~~~-------------------------~-~-----   44 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAA-E----DLELVAAVDRPGSPLVG-------------------------Q-G-----   44 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhC-C----CCEEEEEEecCCccccc-------------------------c-C-----
Confidence            489999998 99999999888764 2    15544 57777653211                         0 0     


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                          .                    ..+...+|+++.++++|+||.++|+....+.+......      +..++..+-|+
T Consensus        45 ----~--------------------~~i~~~~dl~~ll~~~DvVid~t~p~~~~~~~~~al~~------G~~vvigttG~   94 (257)
T PRK00048         45 ----A--------------------LGVAITDDLEAVLADADVLIDFTTPEATLENLEFALEH------GKPLVIGTTGF   94 (257)
T ss_pred             ----C--------------------CCccccCCHHHhccCCCEEEECCCHHHHHHHHHHHHHc------CCCEEEECCCC
Confidence                0                    02345678888787899999888888877777665542      44555556676


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ..+
T Consensus        95 s~~   97 (257)
T PRK00048         95 TEE   97 (257)
T ss_pred             CHH
Confidence            654

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.50  E-value=0.00035  Score=64.39  Aligned_cols=88  Identities=24%  Similarity=0.274  Sum_probs=61.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |+|.|+|+|.+|..+|..|++. |     |+|++++++++.+++..        .+..          ...- +.   ++
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~-g-----~~Vv~Id~d~~~~~~~~--------~~~~----------~~~~-v~---gd   52 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEE-G-----HNVVLIDRDEERVEEFL--------ADEL----------DTHV-VI---GD   52 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhC-C-----CceEEEEcCHHHHHHHh--------hhhc----------ceEE-EE---ec
Confidence            7999999999999999999999 8     99999999998765311        1000          0000 00   00


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHH-hcCCCEEEEecCchhHHHHHHHHHhh
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISRY  183 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea-~~~aDlIIlaVps~~~~~vl~~i~~~  183 (333)
                                              -.-.+-++++ ++++|+++.++..+....++-.++..
T Consensus        53 ------------------------~t~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~   89 (225)
T COG0569          53 ------------------------ATDEDVLEEAGIDDADAVVAATGNDEVNSVLALLALK   89 (225)
T ss_pred             ------------------------CCCHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHH
Confidence                                    0001223343 67899999999999999999988854

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=97.49  E-value=0.0003  Score=69.86  Aligned_cols=92  Identities=17%  Similarity=0.241  Sum_probs=64.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|++|..+|..+..- |     .+|.+|++.....+                             +      
T Consensus       116 gktvGIIG~G~IG~~va~~l~a~-G-----~~V~~~Dp~~~~~~-----------------------------~------  154 (381)
T PRK00257        116 ERTYGVVGAGHVGGRLVRVLRGL-G-----WKVLVCDPPRQEAE-----------------------------G------  154 (381)
T ss_pred             cCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCcccccc-----------------------------c------
Confidence            37999999999999999999876 8     89999987542100                             0      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-----HHHHH-HHHHhhhhccCCCCEEEEe
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-----TKEVF-EEISRYWKERITVPVIISL  196 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~-----~~~vl-~~i~~~l~~~~~~~~Ivs~  196 (333)
                                              ... ..++++.++.||+|++.+|-..     ..-++ ++.-..+++   ++++|++
T Consensus       155 ------------------------~~~-~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~---gailIN~  206 (381)
T PRK00257        155 ------------------------DGD-FVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRP---GAWLINA  206 (381)
T ss_pred             ------------------------Ccc-ccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCC---CeEEEEC
Confidence                                    011 1457888889999999999542     33343 223334565   7899998


Q ss_pred             eecCccc
Q 019978          197 AKGVEAE  203 (333)
Q Consensus       197 ~kGi~~~  203 (333)
                      +-|=..+
T Consensus       207 aRG~vVd  213 (381)
T PRK00257        207 SRGAVVD  213 (381)
T ss_pred             CCCcccC
Confidence            8775544

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.49  E-value=0.00037  Score=72.04  Aligned_cols=95  Identities=23%  Similarity=0.206  Sum_probs=68.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|.||..+|..+..- |     ++|..|++.... +.                          ...      
T Consensus       140 gktvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~-~~--------------------------~~~------  180 (526)
T PRK13581        140 GKTLGIIGLGRIGSEVAKRAKAF-G-----MKVIAYDPYISP-ER--------------------------AAQ------  180 (526)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCh-hH--------------------------HHh------
Confidence            37999999999999999999877 7     899999986421 10                          000      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                         +                    .+... ++++.+..||+|++++|.. .+..++ ++....+++   ++++|.++.|=
T Consensus       181 ---~--------------------g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~---ga~lIN~aRG~  233 (526)
T PRK13581        181 ---L--------------------GVELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKP---GVRIINCARGG  233 (526)
T ss_pred             ---c--------------------CCEEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCC---CeEEEECCCCc
Confidence               0                    12233 6888899999999999975 566665 445555676   78899888775


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ..+
T Consensus       234 ~vd  236 (526)
T PRK13581        234 IID  236 (526)
T ss_pred             eeC
Confidence            443

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=97.48  E-value=0.0014  Score=61.84  Aligned_cols=126  Identities=15%  Similarity=0.146  Sum_probs=75.2

Q ss_pred             CceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCc-chhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        43 ~~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      +|||+|+| +|.||..++..+.+..+     .++. +++|... ...+    .+    .              .+.+.  
T Consensus         1 ~ikV~IiGa~G~MG~~i~~~i~~~~~-----~elvav~d~~~~~~~~~----~~----~--------------~~~~~--   51 (266)
T TIGR00036         1 TIKVAVAGAAGRMGRELIKAALAAEG-----LQLVAAFERHGSSLQGT----DA----G--------------ELAGI--   51 (266)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCC-----CEEEEEEecCCccccCC----CH----H--------------HhcCc--
Confidence            47999999 59999999999986523     5544 5665432 1110    00    0              00000  


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                             .                 ...+.+++|+++....+|+||.++|+....+.+......      +..+|+.+.|
T Consensus        52 -------~-----------------~~gv~~~~d~~~l~~~~DvVIdfT~p~~~~~~~~~al~~------g~~vVigttg  101 (266)
T TIGR00036        52 -------G-----------------KVGVPVTDDLEAVETDPDVLIDFTTPEGVLNHLKFALEH------GVRLVVGTTG  101 (266)
T ss_pred             -------C-----------------cCCceeeCCHHHhcCCCCEEEECCChHHHHHHHHHHHHC------CCCEEEECCC
Confidence                   0                 013566788877645689999999998888877776542      4556655558


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchH
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS  238 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~  238 (333)
                      +..+.         .+.+.+...  .....++.+||++.
T Consensus       102 ~~~e~---------~~~l~~aA~--~~g~~v~~a~NfSl  129 (266)
T TIGR00036       102 FSEED---------KQELADLAE--KAGIAAVIAPNFSI  129 (266)
T ss_pred             CCHHH---------HHHHHHHHh--cCCccEEEECcccH
Confidence            76542         122333321  11245777888865

>PRK05442 malate dehydrogenase; Provisional

Probab=97.44  E-value=0.0015  Score=63.63  Aligned_cols=42  Identities=21%  Similarity=0.393  Sum_probs=32.2

Q ss_pred             CCCceEEEECC-CHHHHHHHHHHHHhcCCCC--CCeeEEEEecCCc
Q 019978           41 GDPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR   83 (333)
Q Consensus        41 ~~~~kI~IIGa-G~mG~alA~~La~~~G~~~--~~~~V~l~~r~~~   83 (333)
                      .+++||+|||+ |.+|+.+|..|+.. +.+.  .-.++.|+|++++
T Consensus         2 ~~~~KV~IiGaaG~VG~~~a~~l~~~-~~~~~~~~~el~LiDi~~~   46 (326)
T PRK05442          2 KAPVRVAVTGAAGQIGYSLLFRIASG-DMLGKDQPVILQLLEIPPA   46 (326)
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHhh-hhcCCCCccEEEEEecCCc
Confidence            46789999998 99999999998876 5331  0027999999653

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=97.43  E-value=0.00041  Score=68.80  Aligned_cols=92  Identities=23%  Similarity=0.239  Sum_probs=64.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|++|+.+|..+..- |     .+|..|++.....                            ..       
T Consensus       116 gktvGIIG~G~IG~~vA~~l~a~-G-----~~V~~~dp~~~~~----------------------------~~-------  154 (378)
T PRK15438        116 DRTVGIVGVGNVGRRLQARLEAL-G-----IKTLLCDPPRADR----------------------------GD-------  154 (378)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCccccc----------------------------cc-------
Confidence            47999999999999999999876 8     8999998643100                            00       


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-----HHHHH-HHHHhhhhccCCCCEEEEe
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-----TKEVF-EEISRYWKERITVPVIISL  196 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~-----~~~vl-~~i~~~l~~~~~~~~Ivs~  196 (333)
                                              .. ...++++.+..||+|++.+|-..     ..-++ ++.-..+++   ++++|++
T Consensus       155 ------------------------~~-~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~---gailIN~  206 (378)
T PRK15438        155 ------------------------EG-DFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKP---GAILINA  206 (378)
T ss_pred             ------------------------cc-ccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCC---CcEEEEC
Confidence                                    00 12468888889999999998432     33333 233344565   7899999


Q ss_pred             eecCccc
Q 019978          197 AKGVEAE  203 (333)
Q Consensus       197 ~kGi~~~  203 (333)
                      +-|=..+
T Consensus       207 aRG~vVD  213 (378)
T PRK15438        207 CRGAVVD  213 (378)
T ss_pred             CCchhcC
Confidence            8885544

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=97.42  E-value=0.0014  Score=58.82  Aligned_cols=85  Identities=19%  Similarity=0.126  Sum_probs=50.5

Q ss_pred             eEEEECCCHHHHHHHH--HHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           45 RIVGVGAGAWGSVFTA--MLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        45 kI~IIGaG~mG~alA~--~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      ||+|||+|+.-+..-.  .+... ..+.. .++.|+|+++++++.+.  .+.+.+                .+..     
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~-~~l~~-~ei~L~Did~~RL~~~~--~~~~~~----------------~~~~-----   55 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRT-EELSG-SEIVLMDIDEERLEIVE--RLARRM----------------VEEA-----   55 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCT-TTSTE-EEEEEE-SCHHHHHHHH--HHHHHH----------------HHHC-----
T ss_pred             CEEEECCchHhhHHHHHHHHhcC-ccCCC-cEEEEEcCCHHHHHHHH--HHHHHH----------------HHhc-----
Confidence            8999999987665333  33333 33332 58999999998776432  111111                1100     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHH
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETK  174 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~  174 (333)
                        ..                  ...+..++|.++|+++||+||.++-....+
T Consensus        56 --~~------------------~~~v~~ttd~~eAl~gADfVi~~irvGg~~   87 (183)
T PF02056_consen   56 --GA------------------DLKVEATTDRREALEGADFVINQIRVGGLE   87 (183)
T ss_dssp             --TT------------------SSEEEEESSHHHHHTTESEEEE---TTHHH
T ss_pred             --CC------------------CeEEEEeCCHHHHhCCCCEEEEEeeecchH
Confidence              00                  025788999999999999999988764333

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=97.41  E-value=0.00096  Score=64.05  Aligned_cols=37  Identities=19%  Similarity=0.204  Sum_probs=31.3

Q ss_pred             EEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        46 I~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      |+|||+|.+|+++|..|+.. |..   .++.++|+++++++
T Consensus         1 i~iiGaG~VG~~~a~~l~~~-~~~---~el~l~D~~~~~~~   37 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAK-GLA---SELVLVDVNEEKAK   37 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCccHHH
Confidence            68999999999999999987 621   47999999987654

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.41  E-value=0.00049  Score=68.93  Aligned_cols=38  Identities=21%  Similarity=0.323  Sum_probs=34.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      |+|.|+|+|.+|..++..|.+. |     ++|++++++++.+++
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~-g-----~~v~vid~~~~~~~~   38 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGE-N-----NDVTVIDTDEERLRR   38 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECCHHHHHH
Confidence            6999999999999999999988 7     899999999876543

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.40  E-value=0.00052  Score=66.65  Aligned_cols=96  Identities=21%  Similarity=0.243  Sum_probs=63.8

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .+..+++|||+|.+|.+.+..+... -   +..+|.+|+|++++++++..     .+.+             +  +    
T Consensus       126 ~~~~~lgiiG~G~qA~~~l~al~~~-~---~~~~v~V~~r~~~~~~~~~~-----~~~~-------------~--g----  177 (325)
T TIGR02371       126 KDSSVLGIIGAGRQAWTQLEALSRV-F---DLEEVSVYCRTPSTREKFAL-----RASD-------------Y--E----  177 (325)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhc-C---CCCEEEEECCCHHHHHHHHH-----HHHh-------------h--C----
Confidence            4568999999999999977776543 1   12689999999987653211     0000             0  0    


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEe
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL  196 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~  196 (333)
                                               ..+.+.++.+++++++|+|+.|||+..  .++.  ..++++   ++.|.++
T Consensus       178 -------------------------~~v~~~~~~~eav~~aDiVitaT~s~~--P~~~--~~~l~~---g~~v~~v  221 (325)
T TIGR02371       178 -------------------------VPVRAATDPREAVEGCDILVTTTPSRK--PVVK--ADWVSE---GTHINAI  221 (325)
T ss_pred             -------------------------CcEEEeCCHHHHhccCCEEEEecCCCC--cEec--HHHcCC---CCEEEec
Confidence                                     035567899999999999999999853  2221  134455   6666544

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.39  E-value=0.00084  Score=65.14  Aligned_cols=96  Identities=19%  Similarity=0.205  Sum_probs=63.7

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .+..+++|||+|.+|...+..++...+    -.+|.+|+|++++++++.     +.+...             +.     
T Consensus       125 ~~~~~v~iiGaG~~a~~~~~al~~~~~----~~~v~v~~r~~~~a~~~~-----~~~~~~-------------~~-----  177 (325)
T PRK08618        125 EDAKTLCLIGTGGQAKGQLEAVLAVRD----IERVRVYSRTFEKAYAFA-----QEIQSK-------------FN-----  177 (325)
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHhcCC----ccEEEEECCCHHHHHHHH-----HHHHHh-------------cC-----
Confidence            356799999999999988877754313    157999999988765321     111100             00     


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEe
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL  196 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~  196 (333)
                                               ..+...++.++++.++|+|+.|+|+..  .++.   ..+++   ++.|+++
T Consensus       178 -------------------------~~~~~~~~~~~~~~~aDiVi~aT~s~~--p~i~---~~l~~---G~hV~~i  220 (325)
T PRK08618        178 -------------------------TEIYVVNSADEAIEEADIIVTVTNAKT--PVFS---EKLKK---GVHINAV  220 (325)
T ss_pred             -------------------------CcEEEeCCHHHHHhcCCEEEEccCCCC--cchH---HhcCC---CcEEEec
Confidence                                     024456788889999999999999883  3333   34455   6766554

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.38  E-value=0.00063  Score=66.17  Aligned_cols=82  Identities=28%  Similarity=0.365  Sum_probs=57.7

Q ss_pred             CCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhh
Q 019978           39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE  118 (333)
Q Consensus        39 ~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~  118 (333)
                      ...+.++|+|||+|.+|.+.+..++...+    -.+|++|+|++++++++..     .+.+             .+ +  
T Consensus       128 a~~~~~~v~IiGaG~~a~~~~~al~~~~~----~~~V~v~~R~~~~a~~l~~-----~~~~-------------~~-g--  182 (330)
T PRK08291        128 AREDASRAAVIGAGEQARLQLEALTLVRP----IREVRVWARDAAKAEAYAA-----DLRA-------------EL-G--  182 (330)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhcCC----CCEEEEEcCCHHHHHHHHH-----HHhh-------------cc-C--
Confidence            34556899999999999998888875312    1579999999887654321     0100             00 0  


Q ss_pred             hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh
Q 019978          119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE  172 (333)
Q Consensus       119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~  172 (333)
                                                 ..+...+|+++++.++|+|+.|+|+..
T Consensus       183 ---------------------------~~v~~~~d~~~al~~aDiVi~aT~s~~  209 (330)
T PRK08291        183 ---------------------------IPVTVARDVHEAVAGADIIVTTTPSEE  209 (330)
T ss_pred             ---------------------------ceEEEeCCHHHHHccCCEEEEeeCCCC
Confidence                                       034556888899999999999999863

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=97.38  E-value=0.00059  Score=66.37  Aligned_cols=95  Identities=22%  Similarity=0.225  Sum_probs=68.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC-cchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG-RSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~-~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      -++++|||+|.+|+.+|..+..- |     .+|..|++.. .....                          .       
T Consensus       142 gkTvGIiG~G~IG~~va~~l~af-g-----m~v~~~d~~~~~~~~~--------------------------~-------  182 (324)
T COG0111         142 GKTVGIIGLGRIGRAVAKRLKAF-G-----MKVIGYDPYSPRERAG--------------------------V-------  182 (324)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEECCCCchhhhc--------------------------c-------
Confidence            37999999999999999999876 7     8999999933 21100                          0       


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHH-HHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE-ISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~~-i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                              .......++++.+..||+|.+.+|-. .++.++.. .-..+++   ++++|.++-|
T Consensus       183 ------------------------~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~---gailIN~aRG  235 (324)
T COG0111         183 ------------------------DGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKP---GAILINAARG  235 (324)
T ss_pred             ------------------------ccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCC---CeEEEECCCc
Confidence                                    02334467889999999999999965 46655522 2234566   6789999888


Q ss_pred             Cccc
Q 019978          200 VEAE  203 (333)
Q Consensus       200 i~~~  203 (333)
                      -..+
T Consensus       236 ~vVd  239 (324)
T COG0111         236 GVVD  239 (324)
T ss_pred             ceec
Confidence            5544

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.37  E-value=0.00073  Score=67.72  Aligned_cols=92  Identities=21%  Similarity=0.300  Sum_probs=67.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ++|+|||.|++|..+|..+..- |     .+|..|++.+...                            ..        
T Consensus       152 ktvGIiG~G~IG~~vA~~~~~f-G-----m~V~~~d~~~~~~----------------------------~~--------  189 (409)
T PRK11790        152 KTLGIVGYGHIGTQLSVLAESL-G-----MRVYFYDIEDKLP----------------------------LG--------  189 (409)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCCcccc----------------------------cC--------
Confidence            7999999999999999999766 7     8999999764210                            00        


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecCc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                             .+....++++.+..||+|++.+|.. ....++ ++.-..+++   ++++|+++-|-.
T Consensus       190 -----------------------~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~---ga~lIN~aRG~~  243 (409)
T PRK11790        190 -----------------------NARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKP---GAILINASRGTV  243 (409)
T ss_pred             -----------------------CceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCC---CeEEEECCCCcc
Confidence                                   1223357889999999999999964 455555 233344566   789999887755


Q ss_pred             cc
Q 019978          202 AE  203 (333)
Q Consensus       202 ~~  203 (333)
                      .+
T Consensus       244 vd  245 (409)
T PRK11790        244 VD  245 (409)
T ss_pred             cC
Confidence            44

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.35  E-value=0.00072  Score=64.88  Aligned_cols=36  Identities=17%  Similarity=0.236  Sum_probs=32.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      .+|+.|+|+|.+|..++..|... |     .+|++++|+++.
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~-G-----a~V~v~~r~~~~  187 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKAL-G-----ANVTVGARKSAH  187 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEECCHHH
Confidence            47999999999999999999887 8     899999999754

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=97.33  E-value=0.0016  Score=61.44  Aligned_cols=93  Identities=17%  Similarity=0.198  Sum_probs=58.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEE-EecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRI-WRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l-~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ||||+|||+|+||..++..+.+. ..    .++.. +.++. ..++.         .+             .+.      
T Consensus         1 m~rVgIiG~G~iG~~~~~~l~~~-~~----~~l~~v~~~~~-~~~~~---------~~-------------~~~------   46 (265)
T PRK13303          1 MMKVAMIGFGAIGAAVLELLEHD-PD----LRVDWVIVPEH-SIDAV---------RR-------------ALG------   46 (265)
T ss_pred             CcEEEEECCCHHHHHHHHHHhhC-CC----ceEEEEEEcCC-CHHHH---------hh-------------hhc------
Confidence            58999999999999999999775 21    45443 33332 21110         00             000      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                              ..+.+++|+++...+.|+|++|+|+....+...+...   .   ++.+++...|
T Consensus        47 ------------------------~~~~~~~d~~~l~~~~DvVve~t~~~~~~e~~~~aL~---a---Gk~Vvi~s~~   94 (265)
T PRK13303         47 ------------------------EAVRVVSSVDALPQRPDLVVECAGHAALKEHVVPILK---A---GIDCAVISVG   94 (265)
T ss_pred             ------------------------cCCeeeCCHHHhccCCCEEEECCCHHHHHHHHHHHHH---c---CCCEEEeChH
Confidence                                    0244567777653568999999999887776666543   3   4556655544

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.33  E-value=0.0026  Score=61.91  Aligned_cols=40  Identities=20%  Similarity=0.389  Sum_probs=31.8

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCC--CCeeEEEEecCC
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG   82 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~--~~~~V~l~~r~~   82 (333)
                      ++.||+|||+ |.+|+++|..|+.. |.+.  ...++.|+|+++
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~-~~~~~~~~~el~L~Di~~   44 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASG-ELFGKDQPVVLHLLDIPP   44 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhC-CcccCCCccEEEEEecCC
Confidence            5789999998 99999999999887 6321  001799999965

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=97.32  E-value=0.0022  Score=62.30  Aligned_cols=40  Identities=20%  Similarity=0.406  Sum_probs=31.2

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCC--CCeeEEEEecCCc
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~--~~~~V~l~~r~~~   83 (333)
                      ++||+|||+ |.+|+++|..|+.. |.+.  .-.++.|+|++++
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~-~~~~~~~~~el~L~Di~~~   44 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASG-EMFGPDQPVILQLLELPQA   44 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhc-cccCCCCceEEEEEecCCc
Confidence            579999999 99999999999887 6331  0017999999654

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=97.32  E-value=0.00087  Score=64.74  Aligned_cols=92  Identities=17%  Similarity=0.281  Sum_probs=64.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|++|..+|..+..- |     .+|..|+|.....+                            .       
T Consensus       145 gktvGIiG~G~IG~~vA~~~~~f-g-----m~V~~~d~~~~~~~----------------------------~-------  183 (311)
T PRK08410        145 GKKWGIIGLGTIGKRVAKIAQAF-G-----AKVVYYSTSGKNKN----------------------------E-------  183 (311)
T ss_pred             CCEEEEECCCHHHHHHHHHHhhc-C-----CEEEEECCCccccc----------------------------c-------
Confidence            37999999999999999998654 7     89999988542100                            0       


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~-~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                              .+. ..++++.+..||+|++++|-. ..+.++. +.-..+++   ++++|+++-|=
T Consensus       184 ------------------------~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~---~a~lIN~aRG~  235 (311)
T PRK08410        184 ------------------------EYE-RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKD---GAILINVGRGG  235 (311)
T ss_pred             ------------------------Cce-eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCC---CeEEEECCCcc
Confidence                                    111 236888899999999999954 4544442 23334566   78999998875


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ..+
T Consensus       236 vVD  238 (311)
T PRK08410        236 IVN  238 (311)
T ss_pred             ccC
Confidence            444

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.30  E-value=0.0028  Score=57.43  Aligned_cols=32  Identities=19%  Similarity=0.231  Sum_probs=30.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRP   81 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~   81 (333)
                      .||+|+|+|.||+.+|..|++. |     . +++++|++
T Consensus        22 ~~V~IvG~GglGs~ia~~La~~-G-----vg~i~lvD~D   54 (200)
T TIGR02354        22 ATVAICGLGGLGSNVAINLARA-G-----IGKLILVDFD   54 (200)
T ss_pred             CcEEEECcCHHHHHHHHHHHHc-C-----CCEEEEECCC
Confidence            6999999999999999999999 8     5 79999998

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=97.28  E-value=0.001  Score=59.54  Aligned_cols=98  Identities=18%  Similarity=0.333  Sum_probs=69.3

Q ss_pred             chHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHH-HHHhcCCCCCCee-EEEEecCCcchhhhhhhhHHHHHhhhh
Q 019978           24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAM-LQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSRE  101 (333)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~-La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~  101 (333)
                      +.+.-+++|..+.|-.+  +-++.|||+|++|.|++.+ +.++.|     .+ |-++|.+++.+-.              
T Consensus        67 nV~~L~~ff~~~Lg~~~--~tnviiVG~GnlG~All~Y~f~~~~~-----~~iv~~FDv~~~~VG~--------------  125 (211)
T COG2344          67 NVKYLRDFFDDLLGQDK--TTNVIIVGVGNLGRALLNYNFSKKNG-----MKIVAAFDVDPDKVGT--------------  125 (211)
T ss_pred             cHHHHHHHHHHHhCCCc--ceeEEEEccChHHHHHhcCcchhhcC-----ceEEEEecCCHHHhCc--------------
Confidence            56667788888888443  4599999999999999988 554424     44 4578888764310              


Q ss_pred             hHHHHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHH
Q 019978          102 DVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEE  179 (333)
Q Consensus       102 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~  179 (333)
                                 ...+         +                    .++-.++++..++  +.|+.|+|||+..-+++++.
T Consensus       126 -----------~~~~---------v--------------------~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~vad~  165 (211)
T COG2344         126 -----------KIGD---------V--------------------PVYDLDDLEKFVKKNDVEIAILTVPAEHAQEVADR  165 (211)
T ss_pred             -----------ccCC---------e--------------------eeechHHHHHHHHhcCccEEEEEccHHHHHHHHHH
Confidence                       1111         1                    2444466776666  78999999999999999988


Q ss_pred             HHh
Q 019978          180 ISR  182 (333)
Q Consensus       180 i~~  182 (333)
                      +-.
T Consensus       166 Lv~  168 (211)
T COG2344         166 LVK  168 (211)
T ss_pred             HHH
Confidence            765

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.27  E-value=0.0028  Score=58.46  Aligned_cols=82  Identities=20%  Similarity=0.390  Sum_probs=59.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |+|+|||+|++|..+...+-+.  .. +-.-|.+|+|+.+++.++.         .             .+         
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~--~~-~~e~v~v~D~~~ek~~~~~---------~-------------~~---------   46 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDG--RV-DFELVAVYDRDEEKAKELE---------A-------------SV---------   46 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcC--Cc-ceeEEEEecCCHHHHHHHH---------h-------------hc---------
Confidence            6899999999999999988643  21 1034789999998764311         0             00         


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHh
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                                             ..+..+++.+.+.+.|+++.|-..+++++...++..
T Consensus        47 -----------------------~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~~~L~   82 (255)
T COG1712          47 -----------------------GRRCVSDIDELIAEVDLVVEAASPEAVREYVPKILK   82 (255)
T ss_pred             -----------------------CCCccccHHHHhhccceeeeeCCHHHHHHHhHHHHh
Confidence                                   112237788878999999999999999998888765

>PLN02928 oxidoreductase family protein

Probab=97.27  E-value=0.00081  Score=65.97  Aligned_cols=108  Identities=21%  Similarity=0.169  Sum_probs=67.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|.+|..+|..+..- |     .+|+.|+|+......   ..+    . .         ........     
T Consensus       159 gktvGIiG~G~IG~~vA~~l~af-G-----~~V~~~dr~~~~~~~---~~~----~-~---------~~~~~~~~-----  210 (347)
T PLN02928        159 GKTVFILGYGAIGIELAKRLRPF-G-----VKLLATRRSWTSEPE---DGL----L-I---------PNGDVDDL-----  210 (347)
T ss_pred             CCEEEEECCCHHHHHHHHHHhhC-C-----CEEEEECCCCChhhh---hhh----c-c---------cccccccc-----
Confidence            37999999999999999999876 7     899999987431100   000    0 0         00000000     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                         .                   .......++++++..||+|++++|.. ..+.++ ++.-..+++   ++++|+++-|-
T Consensus       211 ---~-------------------~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~---ga~lINvaRG~  265 (347)
T PLN02928        211 ---V-------------------DEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKK---GALLVNIARGG  265 (347)
T ss_pred             ---c-------------------cccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCC---CeEEEECCCcc
Confidence               0                   00012357889999999999999954 344444 223344566   78999988774


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ..+
T Consensus       266 lVd  268 (347)
T PLN02928        266 LLD  268 (347)
T ss_pred             ccC
Confidence            443

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.27  E-value=0.00075  Score=67.02  Aligned_cols=88  Identities=23%  Similarity=0.266  Sum_probs=61.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      ||||.|||+|.+|++.|..|+.+ |.    .+|++.+|+.++++++....     .            + ..+-.     
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~-~d----~~V~iAdRs~~~~~~i~~~~-----~------------~-~v~~~-----   52 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQN-GD----GEVTIADRSKEKCARIAELI-----G------------G-KVEAL-----   52 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhC-CC----ceEEEEeCCHHHHHHHHhhc-----c------------c-cceeE-----
Confidence            58999999999999999999999 62    69999999988876543210     0            0 01100     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHH
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEI  180 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i  180 (333)
                        .+                    .+.-...+.+++.+.|+||-+.|+.....+++..
T Consensus        53 --~v--------------------D~~d~~al~~li~~~d~VIn~~p~~~~~~i~ka~   88 (389)
T COG1748          53 --QV--------------------DAADVDALVALIKDFDLVINAAPPFVDLTILKAC   88 (389)
T ss_pred             --Ee--------------------cccChHHHHHHHhcCCEEEEeCCchhhHHHHHHH
Confidence              00                    1111234567788999999999998766666443

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=97.25  E-value=0.0024  Score=64.43  Aligned_cols=110  Identities=14%  Similarity=0.147  Sum_probs=68.8

Q ss_pred             ceEEEECCCHH-HHHHHHHHHHhcC-CCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           44 LRIVGVGAGAW-GSVFTAMLQDSYG-YLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        44 ~kI~IIGaG~m-G~alA~~La~~~G-~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      |||+|||+|+. .--+...|+.. . .+.. .+|.|+|.++++++.+.  .+.+.+                ....    
T Consensus         1 ~KI~iIGgGS~~tp~li~~l~~~-~~~l~~-~ei~L~Did~~Rl~~v~--~l~~~~----------------~~~~----   56 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKT-PEELPI-SEVTLYDIDEERLDIIL--TIAKRY----------------VEEV----   56 (425)
T ss_pred             CEEEEECCchHhHHHHHHHHHcC-hhhCCC-CEEEEEcCCHHHHHHHH--HHHHHH----------------HHhh----
Confidence            79999999983 22334444444 2 2333 68999999998765321  111111                1100    


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch------------------------------
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST------------------------------  171 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~------------------------------  171 (333)
                         ..                  ...+..|+|.++|+++||+||..+-..                              
T Consensus        57 ---g~------------------~~~v~~ttD~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~  115 (425)
T cd05197          57 ---GA------------------DIKFEKTMDLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFS  115 (425)
T ss_pred             ---CC------------------CeEEEEeCCHHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhh
Confidence               00                  015888999999999999999987541                              


Q ss_pred             ------hHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          172 ------ETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       172 ------~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                            .+.++++++.++.+    ++.++..+|-+..
T Consensus       116 alrni~ii~~i~~~i~~~~P----~a~lin~TNP~di  148 (425)
T cd05197         116 GLRQIPYVLDIARKXEKLSP----DAWYLNFTNPAGE  148 (425)
T ss_pred             hhhhHHHHHHHHHHHHHhCC----CcEEEecCChHHH
Confidence                  34455666666543    6788888887654

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.22  E-value=0.039  Score=54.93  Aligned_cols=238  Identities=14%  Similarity=0.183  Sum_probs=136.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccc-hhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLK-YVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~-~~~~~~  121 (333)
                      |.+|.|+|+|..+--+|..+.+. +    ++.|-+++|+..+.++     +.+.+..          +...+. .+.-. 
T Consensus         1 m~~VLI~GtGPvAiQLAv~lk~~-~----~~~vGi~~R~S~rSq~-----f~~aL~~----------~~~~~~v~vqn~-   59 (429)
T PF10100_consen    1 MGNVLIVGTGPVAIQLAVILKKH-G----NCRVGIVGRESVRSQR-----FFEALAR----------SDGLFEVSVQNE-   59 (429)
T ss_pred             CCceEEEcCCHHHHHHHHHHHhc-c----CceeeeecCcchhHHH-----HHHHHHh----------CCCEEEEeecch-
Confidence            35899999999999999999877 5    2579999997654432     3333322          111111 10000 


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                      ....+       .|=         ..+ .+..|.++...+-|.+|+|||+++..+|+++|....-++  -+.||-++..+
T Consensus        60 ~h~~l-------~G~---------~~id~~~~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~--vk~iVLvSPtf  121 (429)
T PF10100_consen   60 QHQAL-------SGE---------CTIDHVFQDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKR--VKSIVLVSPTF  121 (429)
T ss_pred             hhhhh-------cCe---------EEhhHhhcCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhh--CCEEEEECccc
Confidence            00000       000         011 134677777788999999999999999999998653332  34555566556


Q ss_pred             cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCce----------eEEE-e--CChhhHHHHHHHhCCC
Q 019978          201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYA----------NARI-C--GAEKWRKPLAKFLRRP  267 (333)
Q Consensus       201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~----------~~~~-~--~~~~~~~~l~~ll~~~  267 (333)
                      +..       ..+..++.+ .+.. ..+..++--=-+.....+.++          .+.+ +  ++......++.+|...
T Consensus       122 GS~-------~lv~~~l~~-~~~~-~EVISFStY~gdTr~~d~~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~  192 (429)
T PF10100_consen  122 GSH-------LLVKGFLND-LGPD-AEVISFSTYYGDTRWSDGEQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQL  192 (429)
T ss_pred             chH-------HHHHHHHHh-cCCC-ceEEEeecccccceeccCCCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHc
Confidence            543       334444433 2211 122222111001111111110          1122 2  2346899999999999


Q ss_pred             CeEEEecCChhHHHHHH--------HHHHHHHHHHHHHh-ccC-------CCCCcc--HHHHHHHHHHHHHHH-HHCCCC
Q 019978          268 HFTVWDNGDLVTHEVMG--------GLKNVYAIGAGMVA-ALT-------NESATS--KSVYFAHCTSEMVVM-HGMGRS  328 (333)
Q Consensus       268 ~~~v~~s~Di~gve~~~--------alkNv~Ai~~Gi~~-gl~-------~~~~n~--~~~l~~~~~~E~~~l-~~~G~~  328 (333)
                      ++.+...+....+|--.        .+.|-.++.+=.-. +..       -.|.=.  .-.=|...-+||..+ .++|+.
T Consensus       193 gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~  272 (429)
T PF10100_consen  193 GIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPKYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIE  272 (429)
T ss_pred             CCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999998443        57777777543332 111       112222  225577788999999 899875

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.15  E-value=0.0045  Score=59.89  Aligned_cols=34  Identities=15%  Similarity=0.335  Sum_probs=29.3

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      |||+|||+ |.+|+++|..|+.. +..   .++.|+|++
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~-~~~---~elvLiDi~   35 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLN-PLV---SELALYDIV   35 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-CCC---cEEEEEecC
Confidence            79999999 99999999999877 521   379999998

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.15  E-value=0.0025  Score=63.87  Aligned_cols=56  Identities=20%  Similarity=0.377  Sum_probs=47.8

Q ss_pred             HHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           26 EERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      .+.+..+.+.++.....+++|.|+|+|.+|..++..|.+. |     ++|++++++++.+++
T Consensus       214 ~~~l~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~-~-----~~v~vid~~~~~~~~  269 (453)
T PRK09496        214 REHIRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKE-G-----YSVKLIERDPERAEE  269 (453)
T ss_pred             HHHHHHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHH
Confidence            3457777888887777789999999999999999999988 7     899999999876553

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=97.14  E-value=0.0055  Score=59.16  Aligned_cols=38  Identities=21%  Similarity=0.243  Sum_probs=31.9

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ||+|||+|.+|+++|..|+.+ +..   .++.|+|++++.++
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~-~~~---~elvL~Di~~~~a~   38 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALAL-GLF---SEIVLIDVNEGVAE   38 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCcchhh
Confidence            799999999999999999887 622   37999999887653

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.14  E-value=0.0019  Score=62.94  Aligned_cols=97  Identities=26%  Similarity=0.274  Sum_probs=66.8

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ++...++|||+|..+..-...+..-.+    --+|.+|+|+++..++...     .                 +.+    
T Consensus       128 ~da~~laiIGaG~qA~~ql~a~~~v~~----~~~I~i~~r~~~~~e~~a~-----~-----------------l~~----  177 (330)
T COG2423         128 KDASTLAIIGAGAQARTQLEALKAVRD----IREIRVYSRDPEAAEAFAA-----R-----------------LRK----  177 (330)
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHhhCC----ccEEEEEcCCHHHHHHHHH-----H-----------------HHh----
Confidence            466799999999999999998876422    1579999999987654211     0                 100    


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEe
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL  196 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~  196 (333)
                          .++                  ..+...++.++++++||+|+-|||+..  .+++.  .++++   ++.|..+
T Consensus       178 ----~~~------------------~~v~a~~s~~~av~~aDiIvt~T~s~~--Pil~~--~~l~~---G~hI~ai  224 (330)
T COG2423         178 ----RGG------------------EAVGAADSAEEAVEGADIVVTATPSTE--PVLKA--EWLKP---GTHINAI  224 (330)
T ss_pred             ----hcC------------------ccceeccCHHHHhhcCCEEEEecCCCC--CeecH--hhcCC---CcEEEec
Confidence                000                  135677889999999999999999987  33321  34555   5665444

>PRK05086 malate dehydrogenase; Provisional

Probab=97.13  E-value=0.0036  Score=60.50  Aligned_cols=37  Identities=14%  Similarity=0.300  Sum_probs=29.2

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      |||+|||| |.+|++++..+...++.   .+++.++++++.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~---~~el~L~d~~~~   38 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPA---GSELSLYDIAPV   38 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCC---ccEEEEEecCCC
Confidence            79999999 99999999988552121   168999999853

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=97.13  E-value=0.0043  Score=61.81  Aligned_cols=44  Identities=14%  Similarity=0.318  Sum_probs=32.1

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCC--eeEEEE--ecCCcchh
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDK--VLIRIW--RRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~--~~V~l~--~r~~~~~~   86 (333)
                      .+.||+|||+ |.+|+++|..|+.. |.+..+  ..+.|+  +++++.++
T Consensus        43 ~p~KV~IIGAaG~VG~~~A~~l~~~-~l~~~~~ei~L~L~diD~~~~~a~   91 (387)
T TIGR01757        43 KTVNVAVSGAAGMISNHLLFMLASG-EVFGQDQPIALKLLGSERSKEALE   91 (387)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhc-cccCCCCceEEEEeccCccchhhh
Confidence            4689999999 99999999999987 754311  234455  77776543

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PLN00106 malate dehydrogenase

Probab=97.12  E-value=0.0044  Score=60.27  Aligned_cols=48  Identities=15%  Similarity=0.310  Sum_probs=35.8

Q ss_pred             HHHHhhccCCCCCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           31 ELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        31 ~~~~~~~~~~~~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      |+|.-..+-...+.||+|+|+ |.+|+.+|..|+.+ +..   .++.++|+++
T Consensus         6 ~~~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~-~~~---~el~L~Di~~   54 (323)
T PLN00106          6 SLRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMN-PLV---SELHLYDIAN   54 (323)
T ss_pred             hhhccccccCCCCCEEEEECCCCHHHHHHHHHHHhC-CCC---CEEEEEecCC
Confidence            344333333444579999999 99999999999976 521   4799999987

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.12  E-value=0.0018  Score=61.82  Aligned_cols=66  Identities=20%  Similarity=0.237  Sum_probs=45.2

Q ss_pred             cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +|-++-.|-.-.-=+.+++...  .....++|.|+|+|..|.+++..|+.. |.    .+|++++|+.++++.
T Consensus       101 ~g~l~G~NTD~~G~~~~l~~~~--~~~~~k~vlIlGaGGaaraia~aL~~~-G~----~~I~I~nR~~~ka~~  166 (284)
T PRK12549        101 DGRRIGHNTDWSGFAESFRRGL--PDASLERVVQLGAGGAGAAVAHALLTL-GV----ERLTIFDVDPARAAA  166 (284)
T ss_pred             CCEEEEEcCCHHHHHHHHHhhc--cCccCCEEEEECCcHHHHHHHHHHHHc-CC----CEEEEECCCHHHHHH
Confidence            4444445544444444554321  122347999999999999999999988 71    379999999876654

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=97.11  E-value=0.0036  Score=60.53  Aligned_cols=38  Identities=18%  Similarity=0.268  Sum_probs=31.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      +||+|||+|.+|+++|..|... +.   ..++.|+|++++.+
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~-~~---~~el~LiDi~~~~~   38 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQ-GL---GSELVLIDINEEKA   38 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcc-cc---cceEEEEEcccccc
Confidence            6999999999999999999766 41   14899999997654

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.11  E-value=0.0034  Score=61.44  Aligned_cols=41  Identities=17%  Similarity=0.235  Sum_probs=32.3

Q ss_pred             HhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       157 a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                      ...++|+|++|+|.....++...+..   .   ++.||.++..+...
T Consensus        65 ~~~~vD~Vf~alP~~~~~~~v~~a~~---a---G~~VID~S~~fR~~  105 (343)
T PRK00436         65 ILAGADVVFLALPHGVSMDLAPQLLE---A---GVKVIDLSADFRLK  105 (343)
T ss_pred             HhcCCCEEEECCCcHHHHHHHHHHHh---C---CCEEEECCcccCCC
Confidence            45689999999999988888887754   2   67899988776653

>PLN00203 glutamyl-tRNA reductase

Probab=97.10  E-value=0.0011  Score=68.33  Aligned_cols=50  Identities=18%  Similarity=0.288  Sum_probs=37.6

Q ss_pred             HHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           33 RRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        33 ~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      ++.++...-...+|+|||+|.||.+++..|... |.    .+|++++|+.++++.
T Consensus       256 ~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~-G~----~~V~V~nRs~era~~  305 (519)
T PLN00203        256 LMKLPESSHASARVLVIGAGKMGKLLVKHLVSK-GC----TKMVVVNRSEERVAA  305 (519)
T ss_pred             HHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhC-CC----CeEEEEeCCHHHHHH
Confidence            344443222347999999999999999999988 71    379999999876543

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=97.10  E-value=0.0026  Score=61.89  Aligned_cols=94  Identities=22%  Similarity=0.297  Sum_probs=65.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ++++|||.|.+|.++|..+.-- |     .+|..|+|.+. -+.           +               .        
T Consensus       147 ktvGIiG~GrIG~avA~r~~~F-g-----m~v~y~~~~~~-~~~-----------~---------------~--------  185 (324)
T COG1052         147 KTLGIIGLGRIGQAVARRLKGF-G-----MKVLYYDRSPN-PEA-----------E---------------K--------  185 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHhcC-C-----CEEEEECCCCC-hHH-----------H---------------h--------
Confidence            7999999999999999999844 6     89999999873 110           0               0        


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHhhhhccCCCCEEEEeeecCc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~-~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                       .+                    .....+ +++.++.+|+|.+.+|.. ...-++. +.-..+++   +.++|.++-|=.
T Consensus       186 -~~--------------------~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~---ga~lVNtaRG~~  240 (324)
T COG1052         186 -EL--------------------GARYVD-LDELLAESDIISLHCPLTPETRHLINAEELAKMKP---GAILVNTARGGL  240 (324)
T ss_pred             -hc--------------------Cceecc-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCC---CeEEEECCCccc
Confidence             00                    122223 788899999999999965 4555552 23334565   688898887754


Q ss_pred             cc
Q 019978          202 AE  203 (333)
Q Consensus       202 ~~  203 (333)
                      .+
T Consensus       241 VD  242 (324)
T COG1052         241 VD  242 (324)
T ss_pred             cC
Confidence            43

>PLN02306 hydroxypyruvate reductase

Probab=97.09  E-value=0.0024  Score=63.61  Aligned_cols=112  Identities=15%  Similarity=0.204  Sum_probs=68.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|.+|..+|..+...+|     .+|..|++.......    .   .....          ...+...     
T Consensus       165 gktvGIiG~G~IG~~vA~~l~~~fG-----m~V~~~d~~~~~~~~----~---~~~~~----------~~~l~~~-----  217 (386)
T PLN02306        165 GQTVGVIGAGRIGSAYARMMVEGFK-----MNLIYYDLYQSTRLE----K---FVTAY----------GQFLKAN-----  217 (386)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC-----CEEEEECCCCchhhh----h---hhhhh----------ccccccc-----
Confidence            3799999999999999999864446     899999987531100    0   00000          0000000     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~-~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                        ..                 ....++...++++.+..||+|++++|-. .+..++. +.-..+++   ++++|.++-|=
T Consensus       218 --~~-----------------~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~---ga~lIN~aRG~  275 (386)
T PLN02306        218 --GE-----------------QPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKK---EAVLVNASRGP  275 (386)
T ss_pred             --cc-----------------ccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCC---CeEEEECCCcc
Confidence              00                 0001223468999999999999999954 4555552 23344566   78999988774


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ..+
T Consensus       276 lVD  278 (386)
T PLN02306        276 VID  278 (386)
T ss_pred             ccC
Confidence            443

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=97.08  E-value=0.0039  Score=60.35  Aligned_cols=34  Identities=21%  Similarity=0.475  Sum_probs=29.3

Q ss_pred             eEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ||+|||+ |.+|+++|..|+.+ +..   .++.|+|+++
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~-~~~---~elvL~Di~~   35 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQ-PYV---SELSLYDIAG   35 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhC-CCC---cEEEEecCCC
Confidence            7999999 99999999999887 621   3799999987

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=97.08  E-value=0.0058  Score=61.83  Aligned_cols=52  Identities=21%  Similarity=0.274  Sum_probs=39.0

Q ss_pred             CeEEecCHHHHhcCCCEEEEecCch------------------------------------hHHHHHHHHHhhhhccCCC
Q 019978          147 PLKVVTNLQEAVWDADIVINGLPST------------------------------------ETKEVFEEISRYWKERITV  190 (333)
Q Consensus       147 ~i~~t~d~~ea~~~aDlIIlaVps~------------------------------------~~~~vl~~i~~~l~~~~~~  190 (333)
                      .+..|+|.++|+++||+||..+-..                                    .+.++++++.++.+    +
T Consensus        61 ~v~~Ttdr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~p----d  136 (437)
T cd05298          61 KFVYTTDPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSP----D  136 (437)
T ss_pred             EEEEECCHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCC----C
Confidence            5889999999999999999987442                                    34555666666543    5


Q ss_pred             CEEEEeeecCcc
Q 019978          191 PVIISLAKGVEA  202 (333)
Q Consensus       191 ~~Ivs~~kGi~~  202 (333)
                      ..++..+|....
T Consensus       137 a~lin~tNP~~~  148 (437)
T cd05298         137 AWILNYSNPAAI  148 (437)
T ss_pred             eEEEEecCcHHH
Confidence            788888887654

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.07  E-value=0.0023  Score=62.82  Aligned_cols=98  Identities=13%  Similarity=0.099  Sum_probs=65.3

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .+..+++|||+|..|..-...+..- -   +-.+|++|+|++++++++..     .+.+               .+    
T Consensus       127 ~da~~l~iiGaG~QA~~~l~a~~~v-r---~i~~V~v~~r~~~~a~~~~~-----~~~~---------------~~----  178 (346)
T PRK07589        127 PDSRTMALIGNGAQSEFQALAFKAL-L---GIEEIRLYDIDPAATAKLAR-----NLAG---------------PG----  178 (346)
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHh-C---CceEEEEEeCCHHHHHHHHH-----HHHh---------------cC----
Confidence            4567999999999998887776654 1   11689999999987653211     0100               00    


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEe
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL  196 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~  196 (333)
                                               .++.+.++.++++++||+|+.|+++.....+++.  .++++   ++.|..+
T Consensus       179 -------------------------~~v~~~~~~~~av~~ADIIvtaT~S~~~~Pvl~~--~~lkp---G~hV~aI  224 (346)
T PRK07589        179 -------------------------LRIVACRSVAEAVEGADIITTVTADKTNATILTD--DMVEP---GMHINAV  224 (346)
T ss_pred             -------------------------CcEEEeCCHHHHHhcCCEEEEecCCCCCCceecH--HHcCC---CcEEEec
Confidence                                     1356678999999999999999987653333332  34565   6665443

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.07  E-value=0.0018  Score=62.37  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=29.2

Q ss_pred             ceEEEECCC-HHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           44 LRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        44 ~kI~IIGaG-~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      ++|+|||.| .||..+|..|.++ |     +.|++|++.
T Consensus       160 k~V~vIG~s~ivG~PmA~~L~~~-g-----atVtv~~~~  192 (301)
T PRK14194        160 KHAVVIGRSNIVGKPMAALLLQA-H-----CSVTVVHSR  192 (301)
T ss_pred             CEEEEECCCCccHHHHHHHHHHC-C-----CEEEEECCC
Confidence            799999996 9999999999999 8     899999654

>PRK06487 glycerate dehydrogenase; Provisional

Probab=97.07  E-value=0.0019  Score=62.52  Aligned_cols=90  Identities=20%  Similarity=0.224  Sum_probs=63.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|.+|..+|..+..- |     .+|..|++.... +                          .         
T Consensus       148 gktvgIiG~G~IG~~vA~~l~~f-g-----m~V~~~~~~~~~-~--------------------------~---------  185 (317)
T PRK06487        148 GKTLGLLGHGELGGAVARLAEAF-G-----MRVLIGQLPGRP-A--------------------------R---------  185 (317)
T ss_pred             CCEEEEECCCHHHHHHHHHHhhC-C-----CEEEEECCCCCc-c--------------------------c---------
Confidence            37999999999999999998755 7     899989875310 0                          0         


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~-~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                               .. ..++++.+..||+|++++|-. .++.++. +.-..+++   ++++|+++-|=
T Consensus       186 -------------------------~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~---ga~lIN~aRG~  236 (317)
T PRK06487        186 -------------------------PD-RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKP---GALLINTARGG  236 (317)
T ss_pred             -------------------------cc-ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCC---CeEEEECCCcc
Confidence                                     00 125788899999999999954 4555552 23334566   78999988875


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ..+
T Consensus       237 vVd  239 (317)
T PRK06487        237 LVD  239 (317)
T ss_pred             ccC
Confidence            444

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.07  E-value=0.0012  Score=66.50  Aligned_cols=38  Identities=24%  Similarity=0.417  Sum_probs=32.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~   86 (333)
                      .++|+|+|+|.||..++..|... |     . +|++++|++++++
T Consensus       182 ~~~vlViGaG~iG~~~a~~L~~~-G-----~~~V~v~~r~~~ra~  220 (423)
T PRK00045        182 GKKVLVIGAGEMGELVAKHLAEK-G-----VRKITVANRTLERAE  220 (423)
T ss_pred             CCEEEEECchHHHHHHHHHHHHC-C-----CCeEEEEeCCHHHHH
Confidence            37999999999999999999887 7     5 7999999986543

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=97.06  E-value=0.0027  Score=61.76  Aligned_cols=96  Identities=20%  Similarity=0.197  Sum_probs=65.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++++|||.|++|..+|..+...+|     .+|..|++......                           ...      
T Consensus       145 gktvGIiG~G~IG~~va~~l~~~fg-----m~V~~~~~~~~~~~---------------------------~~~------  186 (323)
T PRK15409        145 HKTLGIVGMGRIGMALAQRAHFGFN-----MPILYNARRHHKEA---------------------------EER------  186 (323)
T ss_pred             CCEEEEEcccHHHHHHHHHHHhcCC-----CEEEEECCCCchhh---------------------------HHh------
Confidence            3799999999999999999862336     78888887642100                           000      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                             ..++. .++++.++.||+|++++|-. .++.++ ++.-..+++   ++++|+++-|=
T Consensus       187 -----------------------~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~---ga~lIN~aRG~  239 (323)
T PRK15409        187 -----------------------FNARY-CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKS---SAIFINAGRGP  239 (323)
T ss_pred             -----------------------cCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCC---CeEEEECCCcc
Confidence                                   01222 37888999999999999954 455555 223344566   78999998875


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ..+
T Consensus       240 vVd  242 (323)
T PRK15409        240 VVD  242 (323)
T ss_pred             ccC
Confidence            443

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=97.06  E-value=0.0067  Score=59.01  Aligned_cols=40  Identities=20%  Similarity=0.429  Sum_probs=31.9

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCC--CCeeEEEEecCCc
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~--~~~~V~l~~r~~~   83 (333)
                      +.||+|+|| |.+|+.++..|+.. +.+.  .+.+|.++++++.
T Consensus         2 ~~kV~I~GAaG~VG~~la~~L~~~-~~~~~~~~~el~L~D~~~~   44 (325)
T cd01336           2 PIRVLVTGAAGQIAYSLLPMIAKG-DVFGPDQPVILHLLDIPPA   44 (325)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhC-cccCCCCCcEEEEEEcCCc
Confidence            579999999 99999999999886 5331  1148999999763

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.05  E-value=0.0034  Score=56.82  Aligned_cols=38  Identities=16%  Similarity=0.184  Sum_probs=33.7

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      .-++|+|+|.|+||..+|..|.+. |     ++|++++++++.+
T Consensus        27 ~gk~v~I~G~G~vG~~~A~~L~~~-G-----~~Vvv~D~~~~~~   64 (200)
T cd01075          27 EGKTVAVQGLGKVGYKLAEHLLEE-G-----AKLIVADINEEAV   64 (200)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHHH
Confidence            337999999999999999999998 8     9999999987644

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.03  E-value=0.003  Score=61.71  Aligned_cols=156  Identities=13%  Similarity=0.137  Sum_probs=98.4

Q ss_pred             CCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhh
Q 019978           39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE  118 (333)
Q Consensus        39 ~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~  118 (333)
                      +....+.|+.||.+.||..|+...+++ |     +.|..|.|+..++++.-       -++.+        +   .    
T Consensus         2 ~q~~~~digLiGLaVMGqnLiLN~~d~-G-----f~v~~yNRT~skvD~fl-------aneak--------~---~----   53 (487)
T KOG2653|consen    2 SQTPKADIGLIGLAVMGQNLILNIADK-G-----FTVCAYNRTTSKVDEFL-------ANEAK--------G---T----   53 (487)
T ss_pred             CCccccchhhhhHhhhhhhhhhccccc-C-----ceEEEeccchHhHHHHH-------HHhhc--------C---C----
Confidence            344568999999999999999999999 8     99999999998876421       11110        0   0    


Q ss_pred             hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHH---hcCCCEEEEecCch-hHHHHHHHHHhhhhccCCCCEEE
Q 019978          119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA---VWDADIVINGLPST-ETKEVFEEISRYWKERITVPVII  194 (333)
Q Consensus       119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea---~~~aDlIIlaVps~-~~~~vl~~i~~~l~~~~~~~~Iv  194 (333)
                                                  .+....++++.   ++....|++-|++. .++.+++++.+++.+   +.+||
T Consensus        54 ----------------------------~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~~I~~L~p~Lek---gDiII  102 (487)
T KOG2653|consen   54 ----------------------------KIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQFIEELVPYLEK---GDIII  102 (487)
T ss_pred             ----------------------------cccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHHHHHHHHhhcCC---CCEEE
Confidence                                        12222444443   56789999999875 699999999999987   66777


Q ss_pred             EeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhC
Q 019978          195 SLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLR  265 (333)
Q Consensus       195 s~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~  265 (333)
                      .--|.-..++     ..+..+ +.+ .|.    ..+=+|-+-.+|.++-.|+. +..++.+.-..++.+|.
T Consensus       103 DGGNs~y~dT-----~RR~~e-l~k-~Gi----lfvG~GVSGGEEGAR~GPSl-MpGg~~~Awp~ik~ifq  161 (487)
T KOG2653|consen  103 DGGNSEYQDT-----ERRCRE-LAK-KGI----LFVGSGVSGGEEGARYGPSL-MPGGSKEAWPHIKDIFQ  161 (487)
T ss_pred             eCCcccCcch-----HHHHHH-HHh-cCc----EEEecCccCcccccccCCcc-CCCCChHHHHHHHHHHH
Confidence            6554433332     111111 111 221    22335555566666555553 45555555555555554

>cd00704 MDH Malate dehydrogenase

Probab=97.00  E-value=0.0056  Score=59.55  Aligned_cols=38  Identities=18%  Similarity=0.364  Sum_probs=30.6

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCC--CCeeEEEEecCC
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~--~~~~V~l~~r~~   82 (333)
                      .||+|+|| |.+|+.+|..|+.. |.+.  ..+++.|+|+++
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~-~~~~~~~~~~l~L~Di~~   41 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASG-ELFGDDQPVILHLLDIPP   41 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhC-CccCCCCceEEEEEecCC
Confidence            38999999 99999999999976 5432  113699999987

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06932 glycerate dehydrogenase; Provisional

Probab=97.00  E-value=0.0023  Score=61.91  Aligned_cols=90  Identities=22%  Similarity=0.233  Sum_probs=63.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ++|+|||.|.+|..+|..+..- |     .+|..|++....                            ..         
T Consensus       148 ktvgIiG~G~IG~~va~~l~~f-g-----~~V~~~~~~~~~----------------------------~~---------  184 (314)
T PRK06932        148 STLGVFGKGCLGTEVGRLAQAL-G-----MKVLYAEHKGAS----------------------------VC---------  184 (314)
T ss_pred             CEEEEECCCHHHHHHHHHHhcC-C-----CEEEEECCCccc----------------------------cc---------
Confidence            7999999999999999998654 7     789888764310                            00         


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecCc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                             .. ...++++.+..||+|++++|-. ....++ ++.-..+++   ++++|+++-|-.
T Consensus       185 -----------------------~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~---ga~lIN~aRG~~  237 (314)
T PRK06932        185 -----------------------RE-GYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKP---TAFLINTGRGPL  237 (314)
T ss_pred             -----------------------cc-ccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCC---CeEEEECCCccc
Confidence                                   00 0136788899999999999954 454444 223334566   789999988755


Q ss_pred             cc
Q 019978          202 AE  203 (333)
Q Consensus       202 ~~  203 (333)
                      .+
T Consensus       238 Vd  239 (314)
T PRK06932        238 VD  239 (314)
T ss_pred             cC
Confidence            44

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=96.99  E-value=0.0057  Score=50.39  Aligned_cols=40  Identities=23%  Similarity=0.270  Sum_probs=31.5

Q ss_pred             cCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          159 WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       159 ~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                      .++|+||+|+|.....+++..+.+.+.+   ++++|.++.-+.
T Consensus        64 ~~~DvV~~~~~~~~~~~~~~~~~~~~~~---g~~viD~s~~~~  103 (122)
T smart00859       64 LAVDIVFLALPHGVSKEIAPLLPKAAEA---GVKVIDLSSAFR  103 (122)
T ss_pred             cCCCEEEEcCCcHHHHHHHHHHHhhhcC---CCEEEECCcccc
Confidence            4899999999999999988766665555   788888775444

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=96.97  E-value=0.0024  Score=61.52  Aligned_cols=80  Identities=16%  Similarity=0.154  Sum_probs=58.3

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .+..+++|||+|..|..-+..++.-.    +-.+|.+|+|++++++++..     .+.+             .+ +    
T Consensus       115 ~da~~l~iiGaG~QA~~~~~a~~~v~----~i~~v~v~~r~~~~a~~f~~-----~~~~-------------~~-~----  167 (301)
T PRK06407        115 KNVENFTIIGSGFQAETQLEGMASVY----NPKRIRVYSRNFDHARAFAE-----RFSK-------------EF-G----  167 (301)
T ss_pred             cCCcEEEEECCcHHHHHHHHHHHhcC----CCCEEEEECCCHHHHHHHHH-----HHHH-------------hc-C----
Confidence            46789999999999999998887641    11589999999987654211     1110             00 0    


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE  172 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~  172 (333)
                                               ..+.+.+++++++.+||+|+-+|++..
T Consensus       168 -------------------------~~v~~~~~~~eav~~aDIV~taT~s~~  194 (301)
T PRK06407        168 -------------------------VDIRPVDNAEAALRDADTITSITNSDT  194 (301)
T ss_pred             -------------------------CcEEEeCCHHHHHhcCCEEEEecCCCC
Confidence                                     146667889999999999999999874

>PRK07340 ornithine cyclodeaminase; Validated

Probab=96.97  E-value=0.0029  Score=60.90  Aligned_cols=94  Identities=13%  Similarity=0.119  Sum_probs=62.4

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .+..+++|||+|.+|...+..++...+    -.+|.+|+|++++++++..     .+..              . +    
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~----~~~v~v~~r~~~~a~~~a~-----~~~~--------------~-~----  174 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLP----VRRVWVRGRTAASAAAFCA-----HARA--------------L-G----  174 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCC----CCEEEEEcCCHHHHHHHHH-----HHHh--------------c-C----
Confidence            456799999999999999999875313    1579999999877653211     0000              0 0    


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEe
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL  196 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~  196 (333)
                                               ..+. ..+.++++.++|+|+.|+|+..  .++..   .+++   ++.|..+
T Consensus       175 -------------------------~~~~-~~~~~~av~~aDiVitaT~s~~--Pl~~~---~~~~---g~hi~~i  216 (304)
T PRK07340        175 -------------------------PTAE-PLDGEAIPEAVDLVVTATTSRT--PVYPE---AARA---GRLVVAV  216 (304)
T ss_pred             -------------------------CeeE-ECCHHHHhhcCCEEEEccCCCC--ceeCc---cCCC---CCEEEec
Confidence                                     0122 4678888999999999999874  33322   2455   6666544

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=96.96  E-value=0.0029  Score=61.43  Aligned_cols=80  Identities=23%  Similarity=0.258  Sum_probs=56.6

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .+..+++|||+|.+|.+.+..|+...+.    .+|++|+|++++++++..     .+.+             .+ +    
T Consensus       127 ~~~~~v~iiGaG~qA~~~~~al~~~~~i----~~v~V~~R~~~~a~~~a~-----~~~~-------------~~-g----  179 (326)
T TIGR02992       127 EDSSVVAIFGAGMQARLQLEALTLVRDI----RSARIWARDSAKAEALAL-----QLSS-------------LL-G----  179 (326)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHhCCc----cEEEEECCCHHHHHHHHH-----HHHh-------------hc-C----
Confidence            3567999999999999999998743131    479999999987654211     1100             00 0    


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE  172 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~  172 (333)
                                               ..+...+++++++.++|+|+.|||+..
T Consensus       180 -------------------------~~v~~~~~~~~av~~aDiVvtaT~s~~  206 (326)
T TIGR02992       180 -------------------------IDVTAATDPRAAMSGADIIVTTTPSET  206 (326)
T ss_pred             -------------------------ceEEEeCCHHHHhccCCEEEEecCCCC
Confidence                                     034556888899999999999999854

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=96.91  E-value=0.0088  Score=60.21  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.6

Q ss_pred             CeEEecCHHHHhcCCCEEEEecC
Q 019978          147 PLKVVTNLQEAVWDADIVINGLP  169 (333)
Q Consensus       147 ~i~~t~d~~ea~~~aDlIIlaVp  169 (333)
                      .+..|+|.++|+++||+||.++-
T Consensus        62 ~v~~t~d~~~al~gadfVi~~~~   84 (419)
T cd05296          62 KVHLTTDRREALEGADFVFTQIR   84 (419)
T ss_pred             EEEEeCCHHHHhCCCCEEEEEEe
Confidence            57889999999999999999773

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PRK06823 ornithine cyclodeaminase; Validated

Probab=96.91  E-value=0.0044  Score=60.04  Aligned_cols=97  Identities=15%  Similarity=0.226  Sum_probs=66.4

Q ss_pred             CCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        40 ~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      ..+..+++|||+|..|..-+..+..- -   +-.+|++|+|+++++++..     +.+.+              . +   
T Consensus       125 ~~d~~~l~iiG~G~qA~~~~~a~~~v-~---~i~~v~v~~r~~~~a~~~~-----~~~~~--------------~-~---  177 (315)
T PRK06823        125 PQHVSAIGIVGTGIQARMQLMYLKNV-T---DCRQLWVWGRSETALEEYR-----QYAQA--------------L-G---  177 (315)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhc-C---CCCEEEEECCCHHHHHHHH-----HHHHh--------------c-C---
Confidence            45678999999999999998887654 1   1158999999998765421     11100              0 0   


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEe
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL  196 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~  196 (333)
                                                ..+.+.++.++++++||+|+.||++..  .+++  ..++++   ++.|..+
T Consensus       178 --------------------------~~v~~~~~~~~av~~ADIV~taT~s~~--P~~~--~~~l~~---G~hi~~i  221 (315)
T PRK06823        178 --------------------------FAVNTTLDAAEVAHAANLIVTTTPSRE--PLLQ--AEDIQP---GTHITAV  221 (315)
T ss_pred             --------------------------CcEEEECCHHHHhcCCCEEEEecCCCC--ceeC--HHHcCC---CcEEEec
Confidence                                      145667889999999999999999874  3332  134555   6666544

>PTZ00325 malate dehydrogenase; Provisional

Probab=96.90  E-value=0.0072  Score=58.78  Aligned_cols=35  Identities=14%  Similarity=0.334  Sum_probs=29.1

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      |.||+|+|+ |.+|+.+|..|+.. +..   .++.|+|++
T Consensus         8 ~~KI~IiGaaG~VGs~~a~~l~~~-~~~---~elvL~Di~   43 (321)
T PTZ00325          8 MFKVAVLGAAGGIGQPLSLLLKQN-PHV---SELSLYDIV   43 (321)
T ss_pred             CCEEEEECCCCHHHHHHHHHHhcC-CCC---CEEEEEecC
Confidence            469999999 99999999999865 421   589999993

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=96.88  E-value=0.012  Score=57.36  Aligned_cols=38  Identities=24%  Similarity=0.444  Sum_probs=30.8

Q ss_pred             eEEEECC-CHHHHHHHHHHHHhcCCCC--CCeeEEEEecCCc
Q 019978           45 RIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR   83 (333)
Q Consensus        45 kI~IIGa-G~mG~alA~~La~~~G~~~--~~~~V~l~~r~~~   83 (333)
                      ||+|||+ |.+|+.+|..|+.. +.+.  ..+++.|+|++++
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~-~~~~~~~e~el~LiD~~~~   41 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARG-RMLGKDQPIILHLLDIPPA   41 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhc-cccCCCCccEEEEEecCCc
Confidence            6999999 99999999999987 6442  2247999999664

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=96.86  E-value=0.004  Score=60.56  Aligned_cols=35  Identities=23%  Similarity=0.378  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~   82 (333)
                      ++||+|+|+|+||...+..+.++.+     .++. +|++++
T Consensus         3 kIRVgIVG~GnIGr~~a~al~~~pd-----~ELVgV~dr~~   38 (324)
T TIGR01921         3 KIRAAIVGYGNLGRSVEKAIQQQPD-----MELVGVFSRRG   38 (324)
T ss_pred             CcEEEEEeecHHHHHHHHHHHhCCC-----cEEEEEEcCCc
Confidence            4799999999999999998876522     5654 678875

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=96.84  E-value=0.0046  Score=56.30  Aligned_cols=99  Identities=21%  Similarity=0.308  Sum_probs=63.1

Q ss_pred             cchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHh-cCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhh
Q 019978           23 GSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDS-YGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSR  100 (333)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~-~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~  100 (333)
                      -.+.+=+..++...++..  ..+|+|||+|.+|..++..+... .|     +++. +++++++...+             
T Consensus        66 y~v~~l~~~~~~~l~~~~--~~rV~IIGaG~iG~~l~~~~~~~~~g-----~~ivgv~D~d~~~~~~-------------  125 (213)
T PRK05472         66 YNVEELLEFIEKILGLDR--TWNVALVGAGNLGRALLNYNGFEKRG-----FKIVAAFDVDPEKIGT-------------  125 (213)
T ss_pred             eeHHHHHHHHHHHhCCCC--CcEEEEECCCHHHHHHHHhhhcccCC-----cEEEEEEECChhhcCC-------------
Confidence            345556667777777663  46999999999999999864321 14     5544 67776643210             


Q ss_pred             hhHHHHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHH
Q 019978          101 EDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFE  178 (333)
Q Consensus       101 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~  178 (333)
                                  ...+.                             ++...+++.+.++  +.|.+++|+|.....++.+
T Consensus       126 ------------~i~g~-----------------------------~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~  164 (213)
T PRK05472        126 ------------KIGGI-----------------------------PVYHIDELEEVVKENDIEIGILTVPAEAAQEVAD  164 (213)
T ss_pred             ------------EeCCe-----------------------------EEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHH
Confidence                        11110                             1222345555554  4999999999998887777


Q ss_pred             HHHh
Q 019978          179 EISR  182 (333)
Q Consensus       179 ~i~~  182 (333)
                      .+..
T Consensus       165 ~l~~  168 (213)
T PRK05472        165 RLVE  168 (213)
T ss_pred             HHHH
Confidence            6653

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=96.84  E-value=0.016  Score=46.08  Aligned_cols=90  Identities=18%  Similarity=0.229  Sum_probs=58.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCee-EEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ..||.|+|+|..|.+++..+-+..|     +. +.+++.+++..-+                         ...      
T Consensus         3 ~~~v~ivGag~~G~a~~~~~~~~~g-----~~i~~~~dv~~~~~G~-------------------------~i~------   46 (96)
T PF02629_consen    3 KTNVIIVGAGNLGRALLYNGFSMRG-----FGIVAVFDVDPEKIGK-------------------------EIG------   46 (96)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHHC-----ECEEEEEEECTTTTTS-------------------------EET------
T ss_pred             CCeEEEECCCCcHHHHHHhHHHHcC-----CCCEEEEEcCCCccCc-------------------------EEC------
Confidence            3589999999999999865544435     54 5678888864311                         111      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~--aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                               .+.+..++.++.+.  .|+-+++||+...++++.++...   +  -+.|+.++.
T Consensus        47 -------------------------gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~~~~~~~---g--Ik~i~nft~   95 (96)
T PF02629_consen   47 -------------------------GIPVYGSMDELEEFIEIDIAIITVPAEAAQEVADELVEA---G--IKGIVNFTP   95 (96)
T ss_dssp             -------------------------TEEEESSHHHHHHHCTTSEEEEES-HHHHHHHHHHHHHT---T---SEEEEESS
T ss_pred             -------------------------CEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHHHHHHHc---C--CCEEEEeCC
Confidence                                     23344445444433  99999999999999998887652   1  245666654

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=96.84  E-value=0.0037  Score=60.39  Aligned_cols=98  Identities=24%  Similarity=0.312  Sum_probs=56.5

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .+..+++|||+|..|..-+..++.-.+    -.+|.+|+|++++++++..     .+.             . + +    
T Consensus       126 ~~~~~l~viGaG~QA~~~~~a~~~~~~----i~~v~v~~r~~~~~~~~~~-----~~~-------------~-~-~----  177 (313)
T PF02423_consen  126 PDARTLGVIGAGVQARWHLRALAAVRP----IKEVRVYSRSPERAEAFAA-----RLR-------------D-L-G----  177 (313)
T ss_dssp             TT--EEEEE--SHHHHHHHHHHHHHS------SEEEEE-SSHHHHHHHHH-----HHH-------------C-C-C----
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHhCC----ceEEEEEccChhHHHHHHH-----hhc-------------c-c-c----
Confidence            355799999999999999998876522    1589999999876654211     000             0 0 1    


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEe
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL  196 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~  196 (333)
                                               ..+...+|.++++.+||+|+.|+|+.....+++.  .++++   ++.|.++
T Consensus       178 -------------------------~~v~~~~~~~~av~~aDii~taT~s~~~~P~~~~--~~l~~---g~hi~~i  223 (313)
T PF02423_consen  178 -------------------------VPVVAVDSAEEAVRGADIIVTATPSTTPAPVFDA--EWLKP---GTHINAI  223 (313)
T ss_dssp             -------------------------TCEEEESSHHHHHTTSSEEEE----SSEEESB-G--GGS-T---T-EEEE-
T ss_pred             -------------------------ccceeccchhhhcccCCEEEEccCCCCCCccccH--HHcCC---CcEEEEe
Confidence                                     1477788999999999999999998763122221  34555   6666554

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=96.84  E-value=0.0096  Score=56.32  Aligned_cols=80  Identities=20%  Similarity=0.212  Sum_probs=55.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeE-EEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +||+|||+|+||..++..+... + .. +.++ .+++|++++.++                          +.+      
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~-~-~~-~~~l~~V~~~~~~~~~~--------------------------~~~------   47 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLAD-A-AQ-PCQLAALTRNAADLPPA--------------------------LAG------   47 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcC-C-CC-ceEEEEEecCCHHHHHH--------------------------hhc------
Confidence            6999999999999999998654 2 11 1443 356666543221                          000      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHH-hcCCCEEEEecCchhHHHHHHHHHh
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea-~~~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                                              .+.+.+|+++. .+.+|+|+.|-..+.+++....+..
T Consensus        48 ------------------------~~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~~~iL~   84 (267)
T PRK13301         48 ------------------------RVALLDGLPGLLAWRPDLVVEAAGQQAIAEHAEGCLT   84 (267)
T ss_pred             ------------------------cCcccCCHHHHhhcCCCEEEECCCHHHHHHHHHHHHh
Confidence                                    12344677774 5789999999999999999988764

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=96.84  E-value=0.0075  Score=59.12  Aligned_cols=45  Identities=24%  Similarity=0.286  Sum_probs=33.5

Q ss_pred             CHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       153 d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                      +.++...++|++|+|+|.....++..++..   .   ++.||.++..+-..
T Consensus        61 ~~~~~~~~~DvVf~alP~~~s~~~~~~~~~---~---G~~VIDlS~~fR~~  105 (346)
T TIGR01850        61 DEEEIAEDADVVFLALPHGVSAELAPELLA---A---GVKVIDLSADFRLK  105 (346)
T ss_pred             CHHHhhcCCCEEEECCCchHHHHHHHHHHh---C---CCEEEeCChhhhcC
Confidence            444555689999999999988888887654   2   57888887666543

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=96.83  E-value=0.013  Score=59.42  Aligned_cols=44  Identities=11%  Similarity=0.142  Sum_probs=33.6

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCC--e--eEEEEecCCcchh
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDK--V--LIRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~--~--~V~l~~r~~~~~~   86 (333)
                      .+-||+|||+ |.+|+++|..|+.. +.|..+  .  ++.+++++++.++
T Consensus        99 ~~~KV~IIGAaG~VG~~~A~~L~~~-~v~g~~~~i~~eLvliD~~~~~a~  147 (444)
T PLN00112         99 KLINVAVSGAAGMISNHLLFKLASG-EVFGPDQPIALKLLGSERSKQALE  147 (444)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhc-ccccCCCCcccEEEEEcCCcchhH
Confidence            3579999999 99999999999875 333211  2  6888999988654

>PRK06046 alanine dehydrogenase; Validated

Probab=96.80  E-value=0.0048  Score=59.91  Aligned_cols=96  Identities=23%  Similarity=0.365  Sum_probs=62.4

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .+..+|+|||+|.+|...+..++...+ +   ..|.+|+|++++.++...     .+.+                     
T Consensus       127 ~~~~~vgiiG~G~qa~~h~~al~~~~~-i---~~v~v~~r~~~~~~~~~~-----~~~~---------------------  176 (326)
T PRK06046        127 KDSKVVGIIGAGNQARTQLLALSEVFD-L---EEVRVYDRTKSSAEKFVE-----RMSS---------------------  176 (326)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCC-c---eEEEEECCCHHHHHHHHH-----HHHh---------------------
Confidence            456799999999999999998875412 1   579999999876543211     0000                     


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEe
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL  196 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~  196 (333)
                          .++                  ..+.+.++.+++++ +|+|+.|+|+..  .+++  ..++++   ++.|.++
T Consensus       177 ----~~~------------------~~v~~~~~~~~~l~-aDiVv~aTps~~--P~~~--~~~l~~---g~hV~~i  222 (326)
T PRK06046        177 ----VVG------------------CDVTVAEDIEEACD-CDILVTTTPSRK--PVVK--AEWIKE---GTHINAI  222 (326)
T ss_pred             ----hcC------------------ceEEEeCCHHHHhh-CCEEEEecCCCC--cEec--HHHcCC---CCEEEec
Confidence                000                  03455678888887 999999999863  3322  123455   6665544

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.76  E-value=0.0034  Score=56.01  Aligned_cols=37  Identities=19%  Similarity=0.232  Sum_probs=33.1

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +++.|+|+ |.+|..++..|++. |     ++|++++|+.++++
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~-g-----~~V~l~~R~~~~~~   66 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLARE-G-----ARVVLVGRDLERAQ   66 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHH
Confidence            79999996 99999999999998 7     89999999976554

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.75  E-value=0.015  Score=52.53  Aligned_cols=34  Identities=26%  Similarity=0.275  Sum_probs=30.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||.|+|+|.+|+.++..|+.. |.    .+++++|.+.
T Consensus        22 ~~VlviG~GglGs~ia~~La~~-Gv----~~i~lvD~d~   55 (202)
T TIGR02356        22 SHVLIIGAGGLGSPAALYLAGA-GV----GTIVIVDDDH   55 (202)
T ss_pred             CCEEEECCCHHHHHHHHHHHHc-CC----CeEEEecCCE
Confidence            6999999999999999999999 82    3799999885

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.75  E-value=0.0073  Score=56.91  Aligned_cols=38  Identities=18%  Similarity=0.198  Sum_probs=33.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+++.|+|+|.+|.+++..|++. |     .+|++++|++++++
T Consensus       117 ~k~vliiGaGg~g~aia~~L~~~-g-----~~v~v~~R~~~~~~  154 (270)
T TIGR00507       117 NQRVLIIGAGGAARAVALPLLKA-D-----CNVIIANRTVSKAE  154 (270)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence            46899999999999999999998 8     89999999986654

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.74  E-value=0.021  Score=50.54  Aligned_cols=33  Identities=24%  Similarity=0.281  Sum_probs=29.4

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ||.|+|+|.+|+.++..|++. |.    .+++++|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~-Gv----g~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARS-GV----GNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence            689999999999999999999 82    3699999986

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.73  E-value=0.0027  Score=63.83  Aligned_cols=38  Identities=16%  Similarity=0.153  Sum_probs=33.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +||.|||+|-||.+++..|+.. |.    .++++++|+.++++
T Consensus       182 kkvlviGaG~~a~~va~~L~~~-g~----~~I~V~nRt~~ra~  219 (414)
T PRK13940        182 KNVLIIGAGQTGELLFRHVTAL-AP----KQIMLANRTIEKAQ  219 (414)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHc-CC----CEEEEECCCHHHHH
Confidence            6899999999999999999988 72    47999999987654

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.72  E-value=0.0068  Score=49.06  Aligned_cols=37  Identities=22%  Similarity=0.390  Sum_probs=31.5

Q ss_pred             EEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhh
Q 019978           46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA   88 (333)
Q Consensus        46 I~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~   88 (333)
                      |.|+|.|.+|..++..|.+. +     .+|++++++++.++++
T Consensus         1 vvI~G~g~~~~~i~~~L~~~-~-----~~vvvid~d~~~~~~~   37 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEG-G-----IDVVVIDRDPERVEEL   37 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHT-T-----SEEEEEESSHHHHHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhC-C-----CEEEEEECCcHHHHHH
Confidence            68999999999999999997 5     7999999999876543

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.69  E-value=0.003  Score=63.47  Aligned_cols=38  Identities=24%  Similarity=0.274  Sum_probs=32.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+|+|+|+|.||..++..|... |.    .+|++|+|+.++++
T Consensus       181 ~~VlViGaG~iG~~~a~~L~~~-G~----~~V~v~~rs~~ra~  218 (417)
T TIGR01035       181 KKALLIGAGEMGELVAKHLLRK-GV----GKILIANRTYERAE  218 (417)
T ss_pred             CEEEEECChHHHHHHHHHHHHC-CC----CEEEEEeCCHHHHH
Confidence            6999999999999999999887 62    57999999986543

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=96.66  E-value=0.012  Score=51.83  Aligned_cols=34  Identities=21%  Similarity=0.241  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +++.|+|.|..|..+|..|... |     ..|++++++|-
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~-G-----a~V~V~e~DPi   57 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGL-G-----ARVTVTEIDPI   57 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHT-T------EEEEE-SSHH
T ss_pred             CEEEEeCCCcccHHHHHHHhhC-C-----CEEEEEECChH
Confidence            6899999999999999999888 8     89999999984

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.62  E-value=0.014  Score=64.76  Aligned_cols=44  Identities=11%  Similarity=0.058  Sum_probs=32.1

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCC---------CCeeEEEEecCCcchh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLR---------DKVLIRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~---------~~~~V~l~~r~~~~~~   86 (333)
                      .++||+|||||.||...+..|++. ..++         +...|.+.+++.+.++
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~  620 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAK  620 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHH
Confidence            367999999999999999999886 3111         0013888888876544

>PRK11579 putative oxidoreductase; Provisional

Probab=96.62  E-value=0.015  Score=56.63  Aligned_cols=34  Identities=15%  Similarity=0.172  Sum_probs=25.3

Q ss_pred             EEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHh
Q 019978          149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       149 ~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                      .+.+|+++.+.  +.|+|++|+|+....+++.+...
T Consensus        51 ~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~~al~   86 (346)
T PRK11579         51 TVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAKAALE   86 (346)
T ss_pred             ceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHH
Confidence            34578888775  57999999999877776666543

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.59  E-value=0.0067  Score=58.34  Aligned_cols=30  Identities=20%  Similarity=0.302  Sum_probs=28.2

Q ss_pred             ceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 019978           44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWR   79 (333)
Q Consensus        44 ~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~   79 (333)
                      ++|+||| .|.||..||..|.+. |     +.|++|.
T Consensus       159 k~V~viGrs~~mG~PmA~~L~~~-g-----~tVtv~~  189 (296)
T PRK14188        159 LNAVVIGRSNLVGKPMAQLLLAA-N-----ATVTIAH  189 (296)
T ss_pred             CEEEEEcCCcchHHHHHHHHHhC-C-----CEEEEEC
Confidence            7999999 999999999999998 8     8999994

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=96.56  E-value=0.0086  Score=58.41  Aligned_cols=95  Identities=20%  Similarity=0.340  Sum_probs=64.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ++|+|+|+|++|..+|+.|..- |     ..+..+.|++..-+..          .            .+..        
T Consensus       163 K~vgilG~G~IG~~ia~rL~~F-g-----~~i~y~~r~~~~~~~~----------~------------~~~~--------  206 (336)
T KOG0069|consen  163 KTVGILGLGRIGKAIAKRLKPF-G-----CVILYHSRTQLPPEEA----------Y------------EYYA--------  206 (336)
T ss_pred             CEEEEecCcHHHHHHHHhhhhc-c-----ceeeeecccCCchhhH----------H------------Hhcc--------
Confidence            6999999999999999999775 5     4555556655322110          0            0100        


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHhhhhccCCCCEEEEeeecCc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~-~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                               . ..|.++.+..+|+|+++.|-. .+..++. ++-..+++   +.+||+++-|=.
T Consensus       207 -------------------------~-~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~---g~vlVN~aRG~i  257 (336)
T KOG0069|consen  207 -------------------------E-FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKD---GAVLVNTARGAI  257 (336)
T ss_pred             -------------------------c-ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCC---CeEEEecccccc
Confidence                                     0 245667788999999999965 5777764 34555676   678899888855


Q ss_pred             cc
Q 019978          202 AE  203 (333)
Q Consensus       202 ~~  203 (333)
                      .+
T Consensus       258 id  259 (336)
T KOG0069|consen  258 ID  259 (336)
T ss_pred             cc
Confidence            54

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.55  E-value=0.061  Score=45.11  Aligned_cols=34  Identities=29%  Similarity=0.282  Sum_probs=29.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||+|+|+|.+|+.++..|+.. |.    -+++++|.+.
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~-Gv----~~i~lvD~d~   36 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARS-GV----GKITLVDDDI   36 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHH-TT----SEEEEEESSB
T ss_pred             CEEEEECcCHHHHHHHHHHHHh-CC----CceeecCCcc
Confidence            6999999999999999999999 82    3799999875

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=96.53  E-value=0.011  Score=56.65  Aligned_cols=98  Identities=18%  Similarity=0.152  Sum_probs=61.3

Q ss_pred             CCceEEEECCCHHH-HHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           42 DPLRIVGVGAGAWG-SVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        42 ~~~kI~IIGaG~mG-~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .++||+|||+|.++ ...+..+... +.. - .-|-+++++++++++...        +                     
T Consensus         2 ~~irvgiiG~G~~~~~~~~~~~~~~-~~~-~-~~vav~d~~~~~a~~~a~--------~---------------------   49 (342)
T COG0673           2 KMIRVGIIGAGGIAGKAHLPALAAL-GGG-L-ELVAVVDRDPERAEAFAE--------E---------------------   49 (342)
T ss_pred             CeeEEEEEcccHHHHHHhHHHHHhC-CCc-e-EEEEEecCCHHHHHHHHH--------H---------------------
Confidence            35899999999555 5677777765 410 0 236678888876543110        0                     


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEee
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA  197 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~d~~ea~~~--aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~  197 (333)
                           +                    .+ ...+|+++.+.+  .|+|++|+|+....++.....   ..   ++.| -+-
T Consensus        50 -----~--------------------~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL---~a---GkhV-l~E   97 (342)
T COG0673          50 -----F--------------------GIAKAYTDLEELLADPDIDAVYIATPNALHAELALAAL---EA---GKHV-LCE   97 (342)
T ss_pred             -----c--------------------CCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHH---hc---CCEE-EEc
Confidence                 0                    11 356788887765  599999999987777764433   32   4444 356


Q ss_pred             ecCccc
Q 019978          198 KGVEAE  203 (333)
Q Consensus       198 kGi~~~  203 (333)
                      |-+...
T Consensus        98 KPla~t  103 (342)
T COG0673          98 KPLALT  103 (342)
T ss_pred             CCCCCC
Confidence            666543

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.50  E-value=0.0081  Score=52.18  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=31.8

Q ss_pred             EEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        46 I~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      |.|+|+ |.+|..++..|.++ |     ++|++..|++++.+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~-~-----~~V~~~~R~~~~~~   36 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRR-G-----HEVTALVRSPSKAE   36 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-T-----SEEEEEESSGGGHH
T ss_pred             eEEECCCChHHHHHHHHHHHC-C-----CEEEEEecCchhcc
Confidence            789997 99999999999999 8     99999999987643

...

>PRK06199 ornithine cyclodeaminase; Validated

Probab=96.49  E-value=0.0095  Score=59.23  Aligned_cols=82  Identities=21%  Similarity=0.212  Sum_probs=57.3

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .+..+++|||+|..|..-...++.- -  .+-.+|++|+|+++++++..     +.+.+             .+++.   
T Consensus       153 ~da~~l~iiG~G~QA~~~l~a~~~v-~--~~i~~V~v~~r~~~~a~~f~-----~~~~~-------------~~~~~---  208 (379)
T PRK06199        153 KDSKVVGLLGPGVMGKTILAAFMAV-C--PGIDTIKIKGRGQKSLDSFA-----TWVAE-------------TYPQI---  208 (379)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHh-c--CCccEEEEECCCHHHHHHHH-----HHHHH-------------hcCCC---
Confidence            4668999999999999999888763 1  00158999999998765421     11110             01100   


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST  171 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~  171 (333)
                                               ..+.+.++.++++.+||+|+.|+++.
T Consensus       209 -------------------------~~v~~~~s~~eav~~ADIVvtaT~s~  234 (379)
T PRK06199        209 -------------------------TNVEVVDSIEEVVRGSDIVTYCNSGE  234 (379)
T ss_pred             -------------------------ceEEEeCCHHHHHcCCCEEEEccCCC
Confidence                                     03667789999999999999999763

>PLN02494 adenosylhomocysteinase

Probab=96.47  E-value=0.015  Score=59.15  Aligned_cols=49  Identities=18%  Similarity=0.060  Sum_probs=36.7

Q ss_pred             hhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        29 ~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      +|.+-|..+.. ..-++|+|+|+|.+|..+|..+... |     .+|+++++++.+
T Consensus       241 ~d~i~r~t~i~-LaGKtVvViGyG~IGr~vA~~aka~-G-----a~VIV~e~dp~r  289 (477)
T PLN02494        241 PDGLMRATDVM-IAGKVAVICGYGDVGKGCAAAMKAA-G-----ARVIVTEIDPIC  289 (477)
T ss_pred             HHHHHHhcCCc-cCCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCchh
Confidence            44444444431 1236999999999999999999776 7     899999998754

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.47  E-value=0.014  Score=58.83  Aligned_cols=35  Identities=17%  Similarity=0.104  Sum_probs=31.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      ++|+|+|+|.+|..+|..+... |     .+|+++++++.+
T Consensus       213 k~VlViG~G~IG~~vA~~lr~~-G-----a~ViV~d~dp~r  247 (425)
T PRK05476        213 KVVVVAGYGDVGKGCAQRLRGL-G-----ARVIVTEVDPIC  247 (425)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcCCchh
Confidence            6999999999999999999887 8     899999998854

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.46  E-value=0.0089  Score=56.91  Aligned_cols=68  Identities=19%  Similarity=0.163  Sum_probs=45.4

Q ss_pred             cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +|-++-.|-.-.==+..+++.........+++.|||+|-+|.+++..|++. |.    .+|++++|+.+++++
T Consensus        97 ~g~l~G~NTD~~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~-G~----~~i~I~nRt~~ka~~  164 (282)
T TIGR01809        97 NGIWKGDNTDWDGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALASL-GV----TDITVINRNPDKLSR  164 (282)
T ss_pred             CCcEEEecCCHHHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHHc-CC----CeEEEEeCCHHHHHH
Confidence            444444455444444555542211112236899999999999999999988 72    479999999876654

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.45  E-value=0.053  Score=45.82  Aligned_cols=33  Identities=30%  Similarity=0.313  Sum_probs=29.0

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ||.|+|+|.+|+.++..|+.. |.    .+++++|.+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~-Gv----~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARS-GV----GKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHC-CC----CEEEEEcCCC
Confidence            689999999999999999999 82    3799998874

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.45  E-value=0.012  Score=55.84  Aligned_cols=67  Identities=22%  Similarity=0.199  Sum_probs=44.5

Q ss_pred             cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +|-++-.|-.-.-=+..+++..+. ....+++.|+|+|.+|.+++..|+.. |.    .+|++++|+.+++++
T Consensus        96 ~g~l~G~NTD~~G~~~~l~~~~~~-~~~~k~vlVlGaGg~a~ai~~aL~~~-g~----~~V~v~~R~~~~a~~  162 (278)
T PRK00258         96 DGRLIGDNTDGIGFVRALEERLGV-DLKGKRILILGAGGAARAVILPLLDL-GV----AEITIVNRTVERAEE  162 (278)
T ss_pred             CCEEEEEcccHHHHHHHHHhccCC-CCCCCEEEEEcCcHHHHHHHHHHHHc-CC----CEEEEEeCCHHHHHH
Confidence            344444454444444444432222 12236899999999999999999987 62    589999999876543

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.45  E-value=0.019  Score=56.20  Aligned_cols=33  Identities=30%  Similarity=0.383  Sum_probs=30.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~   82 (333)
                      .||.|||+|.+|+.+|..|+.. |     + +++++|++.
T Consensus        25 ~~VlIiG~GglGs~va~~La~a-G-----vg~i~lvD~D~   58 (338)
T PRK12475         25 KHVLIVGAGALGAANAEALVRA-G-----IGKLTIADRDY   58 (338)
T ss_pred             CcEEEECCCHHHHHHHHHHHHc-C-----CCEEEEEcCCc
Confidence            6899999999999999999999 8     5 799999986

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.44  E-value=0.014  Score=57.70  Aligned_cols=39  Identities=18%  Similarity=0.246  Sum_probs=33.9

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ...+|.|+|+|.+|...+..+... |     .+|++++|++++++
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~l-G-----a~V~v~d~~~~~~~  204 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGL-G-----ATVTILDINIDRLR  204 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHC-C-----CeEEEEECCHHHHH
Confidence            457899999999999999999887 8     78999999876543

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=96.44  E-value=0.023  Score=46.94  Aligned_cols=74  Identities=20%  Similarity=0.268  Sum_probs=52.0

Q ss_pred             ceEEEEC----CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           44 LRIVGVG----AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        44 ~kI~IIG----aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      ++|+|||    .+.+|..+...|.+. |     ++|+.++...+.++                                 
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~-G-----~~v~~Vnp~~~~i~---------------------------------   41 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAA-G-----YEVYPVNPKGGEIL---------------------------------   41 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHT-T------EEEEESTTCSEET---------------------------------
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhC-C-----CEEEEECCCceEEC---------------------------------
Confidence            4799999    699999999999998 8     88877755543221                                 


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhh
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY  183 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~  183 (333)
                                                 .+.+..+++|.-+..|++++++|+..+.++++++...
T Consensus        42 ---------------------------G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~   78 (116)
T PF13380_consen   42 ---------------------------GIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAAL   78 (116)
T ss_dssp             ---------------------------TEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHH
T ss_pred             ---------------------------cEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHc
Confidence                                       2334455555236889999999999999999999864

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=96.43  E-value=0.028  Score=56.68  Aligned_cols=83  Identities=16%  Similarity=0.176  Sum_probs=53.2

Q ss_pred             CceEEEECCCHHHHHHHHH--HHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAM--LQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~--La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .+||+|||+|+.++..-..  +.+. -.+.. .++.|+|.++++.+.+.      .+.+      +      +...    
T Consensus         3 ~~KI~iIGgGSt~tp~~v~g~l~~~-e~l~~-~el~L~Did~~r~~~i~------~~~~------~------~v~~----   58 (442)
T COG1486           3 KFKIVIIGGGSTYTPKLLLGDLART-EELPV-RELALYDIDEERLKIIA------ILAK------K------LVEE----   58 (442)
T ss_pred             cceEEEECCCccccHHHHHHHHhcC-ccCCc-ceEEEEeCCHHHHHHHH------HHHH------H------HHHh----
Confidence            4799999999987764332  3333 33433 68999999998655221      1111      0      1111    


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS  170 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps  170 (333)
                           ..        .        ...+..++|.++|+++||+|+.++-.
T Consensus        59 -----~g--------~--------~~kv~~ttd~~eAl~gAdfVi~~~rv   87 (442)
T COG1486          59 -----AG--------A--------PVKVEATTDRREALEGADFVITQIRV   87 (442)
T ss_pred             -----hC--------C--------CeEEEEecCHHHHhcCCCEEEEEEee
Confidence                 00        0        02578899999999999999998755

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.42  E-value=0.03  Score=56.26  Aligned_cols=36  Identities=17%  Similarity=0.090  Sum_probs=32.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      .+|+|+|+|.+|..++..+... |     .+|+++++++.++
T Consensus       203 ktVvViG~G~IG~~va~~ak~~-G-----a~ViV~d~d~~R~  238 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQ-G-----ARVIVTEVDPICA  238 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEECChhhH
Confidence            6999999999999999999887 8     7899999988654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.42  E-value=0.0083  Score=62.31  Aligned_cols=39  Identities=23%  Similarity=0.298  Sum_probs=35.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA   88 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~   88 (333)
                      -+|.|+|+|.+|..++..|.++ |     ++|+++|.|+++++++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~-g-----~~vvvId~d~~~~~~~  456 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAA-G-----IPLVVIETSRTRVDEL  456 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHC-C-----CCEEEEECCHHHHHHH
Confidence            5899999999999999999998 7     9999999999876543

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.41  E-value=0.022  Score=57.13  Aligned_cols=35  Identities=14%  Similarity=0.072  Sum_probs=31.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      ++|+|+|+|.+|..+|..+... |     .+|++|++++.+
T Consensus       196 k~VvViG~G~IG~~vA~~ak~~-G-----a~ViV~d~dp~r  230 (406)
T TIGR00936       196 KTVVVAGYGWCGKGIAMRARGM-G-----ARVIVTEVDPIR  230 (406)
T ss_pred             CEEEEECCCHHHHHHHHHHhhC-c-----CEEEEEeCChhh
Confidence            6999999999999999999877 7     899999998854

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.41  E-value=0.013  Score=58.29  Aligned_cols=38  Identities=21%  Similarity=0.286  Sum_probs=30.8

Q ss_pred             CCCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           41 GDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        41 ~~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ..+|||+|+|| |..|..+...|..+ .    .++|+++.++..
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~h-P----~~el~~l~s~~s   74 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANH-P----DFEITVMTADRK   74 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhC-C----CCeEEEEEChhh
Confidence            35679999998 99999999999877 2    268888877643

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.41  E-value=0.0084  Score=60.06  Aligned_cols=39  Identities=23%  Similarity=0.378  Sum_probs=34.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      .|+.|||||-||...|.+|+.. |.    .+|++.+|+.+++.+
T Consensus       179 ~~vlvIGAGem~~lva~~L~~~-g~----~~i~IaNRT~erA~~  217 (414)
T COG0373         179 KKVLVIGAGEMGELVAKHLAEK-GV----KKITIANRTLERAEE  217 (414)
T ss_pred             CeEEEEcccHHHHHHHHHHHhC-CC----CEEEEEcCCHHHHHH
Confidence            5899999999999999999998 73    689999999987754

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=96.40  E-value=0.023  Score=54.69  Aligned_cols=35  Identities=23%  Similarity=0.185  Sum_probs=28.9

Q ss_pred             EECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        48 IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      |||+|.+|+++|..|+.. +..   .++.|+|++++.++
T Consensus         1 iIGaG~VG~~~a~~l~~~-~l~---~el~L~Di~~~~~~   35 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQ-GIA---DEIVLIDINKDKAE   35 (299)
T ss_pred             CCCcCHHHHHHHHHHHhc-CCC---CEEEEEeCCCChhh
Confidence            799999999999999887 632   37999999887654

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=96.37  E-value=0.01  Score=60.46  Aligned_cols=35  Identities=17%  Similarity=0.123  Sum_probs=31.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      ++|+|+|.|.+|..+|..+... |     .+|+++++++..
T Consensus       255 KtVgVIG~G~IGr~vA~rL~a~-G-----a~ViV~e~dp~~  289 (476)
T PTZ00075        255 KTVVVCGYGDVGKGCAQALRGF-G-----ARVVVTEIDPIC  289 (476)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCchh
Confidence            6999999999999999999877 7     899999998753

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.36  E-value=0.017  Score=56.25  Aligned_cols=96  Identities=18%  Similarity=0.159  Sum_probs=60.0

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      +|||+|+|| |..|..+...|++. ++  +..++....++.+.-+.+                        .+.+     
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~-~h--p~~~l~~l~s~~~~g~~l------------------------~~~g-----   48 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEER-NF--PVDKLRLLASARSAGKEL------------------------SFKG-----   48 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC-CC--CcceEEEEEccccCCCee------------------------eeCC-----
Confidence            479999997 99999999999987 51  002456666654321110                        0100     


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                              ..+.+.+.....+.++|+||+|+|.....++..++..   .   +..||.++..+
T Consensus        49 ------------------------~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~~~~~~---~---G~~VIDlS~~~   97 (334)
T PRK14874         49 ------------------------KELKVEDLTTFDFSGVDIALFSAGGSVSKKYAPKAAA---A---GAVVIDNSSAF   97 (334)
T ss_pred             ------------------------ceeEEeeCCHHHHcCCCEEEECCChHHHHHHHHHHHh---C---CCEEEECCchh
Confidence                                    0122221111235789999999999988888877643   2   56788766543

>PRK04148 hypothetical protein; Provisional

Probab=96.29  E-value=0.018  Score=49.07  Aligned_cols=87  Identities=20%  Similarity=0.230  Sum_probs=62.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      .+||.+||+| .|..+|..|++. |     ++|+..|.+++.++.++..                     ......   .
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~-G-----~~ViaIDi~~~aV~~a~~~---------------------~~~~v~---d   65 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKES-G-----FDVIVIDINEKAVEKAKKL---------------------GLNAFV---D   65 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHHh---------------------CCeEEE---C
Confidence            3799999999 999999999998 8     9999999999765432210                     011000   0


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKE  186 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~  186 (333)
                                              .+ +..++ +.-+++|+|.-.=|+..+..-+-++++.++-
T Consensus        66 ------------------------Dl-f~p~~-~~y~~a~liysirpp~el~~~~~~la~~~~~  103 (134)
T PRK04148         66 ------------------------DL-FNPNL-EIYKNAKLIYSIRPPRDLQPFILELAKKINV  103 (134)
T ss_pred             ------------------------cC-CCCCH-HHHhcCCEEEEeCCCHHHHHHHHHHHHHcCC
Confidence                                    01 11223 3467999999999999988888888887654

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.27  E-value=0.0074  Score=59.53  Aligned_cols=37  Identities=27%  Similarity=0.436  Sum_probs=30.0

Q ss_pred             EEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchhh
Q 019978           46 IVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDR   87 (333)
Q Consensus        46 I~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~   87 (333)
                      |.|+|+|.+|++++..|++. +    .+ +|++.+|+.+++++
T Consensus         1 IlvlG~G~vG~~~~~~L~~~-~----~~~~v~va~r~~~~~~~   38 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARR-G----PFEEVTVADRNPEKAER   38 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCT-T----CE-EEEEEESSHHHHHH
T ss_pred             CEEEcCcHHHHHHHHHHhcC-C----CCCcEEEEECCHHHHHH
Confidence            78999999999999999998 4    15 89999999987654

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.21  E-value=0.064  Score=48.41  Aligned_cols=34  Identities=24%  Similarity=0.212  Sum_probs=30.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||.|+|+|.+|+.++..|+.. |.    .+++++|.+.
T Consensus        22 s~VlIiG~gglG~evak~La~~-GV----g~i~lvD~d~   55 (197)
T cd01492          22 ARILLIGLKGLGAEIAKNLVLS-GI----GSLTILDDRT   55 (197)
T ss_pred             CcEEEEcCCHHHHHHHHHHHHc-CC----CEEEEEECCc
Confidence            6999999999999999999999 83    4799998875

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.20  E-value=0.034  Score=54.50  Aligned_cols=36  Identities=19%  Similarity=0.267  Sum_probs=28.2

Q ss_pred             CeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHh
Q 019978          147 PLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       147 ~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                      .+.+..++++.+.++|+||.|+|+....+.++....
T Consensus        65 ~i~V~~~~~el~~~vDVVIdaT~~~~~~e~a~~~~~  100 (341)
T PRK04207         65 GIPVAGTIEDLLEKADIVVDATPGGVGAKNKELYEK  100 (341)
T ss_pred             ceEEcCChhHhhccCCEEEECCCchhhHHHHHHHHH
Confidence            466667777777889999999999988777775544

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.19  E-value=0.014  Score=51.64  Aligned_cols=33  Identities=18%  Similarity=0.320  Sum_probs=28.5

Q ss_pred             ceEEEECCCHH-HHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~m-G~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ++|.|||+|-| |..+|..|.+. |     .+|++.+|+.
T Consensus        45 k~vlViG~G~~~G~~~a~~L~~~-g-----~~V~v~~r~~   78 (168)
T cd01080          45 KKVVVVGRSNIVGKPLAALLLNR-N-----ATVTVCHSKT   78 (168)
T ss_pred             CEEEEECCcHHHHHHHHHHHhhC-C-----CEEEEEECCc
Confidence            79999999987 88899999988 7     7888887763

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.14  E-value=0.016  Score=59.36  Aligned_cols=64  Identities=22%  Similarity=0.251  Sum_probs=44.4

Q ss_pred             cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +|-++-.|-.-.-=+..+++. +. ....++++|+|+|.+|.+++..|++. |     .+|++++|++++++
T Consensus       306 ~g~l~G~NTD~~G~~~~l~~~-~~-~~~~k~vlIiGaGgiG~aia~~L~~~-G-----~~V~i~~R~~~~~~  369 (477)
T PRK09310        306 NGKIEGYNTDGEGLFSLLKQK-NI-PLNNQHVAIVGAGGAAKAIATTLARA-G-----AELLIFNRTKAHAE  369 (477)
T ss_pred             CCEEEEEecCHHHHHHHHHhc-CC-CcCCCEEEEEcCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence            444444554444444455432 21 12346899999999999999999998 8     89999999876543

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.13  E-value=0.031  Score=48.66  Aligned_cols=30  Identities=20%  Similarity=0.308  Sum_probs=28.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWR   79 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~   79 (333)
                      ++|.|||+|.+|...+..|.+. |     ++|++++
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~-g-----a~V~VIs   43 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDT-G-----AFVTVVS   43 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEc
Confidence            7999999999999999999998 8     9999995

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.10  E-value=0.085  Score=48.51  Aligned_cols=34  Identities=26%  Similarity=0.306  Sum_probs=30.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||.|+|+|.+|+.+|..|+.. |.    .+++++|.+.
T Consensus        22 ~~VlivG~GglGs~va~~La~~-Gv----g~i~lvD~D~   55 (228)
T cd00757          22 ARVLVVGAGGLGSPAAEYLAAA-GV----GKLGLVDDDV   55 (228)
T ss_pred             CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCE
Confidence            6999999999999999999999 82    4788888775

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.09  E-value=0.036  Score=50.30  Aligned_cols=34  Identities=24%  Similarity=0.157  Sum_probs=30.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      -++|.|||+|.+|...+..|.+. |     ++|++++++.
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~-g-----a~V~VIs~~~   43 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKY-G-----AHIVVISPEL   43 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEcCCC
Confidence            36999999999999999999998 8     8999998653

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.06  E-value=0.011  Score=53.11  Aligned_cols=37  Identities=22%  Similarity=0.247  Sum_probs=34.2

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      |||+|||| |..|+.|+.-..++ |     |+|+-+.|++.++.
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~R-G-----HeVTAivRn~~K~~   38 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKR-G-----HEVTAIVRNASKLA   38 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhC-C-----CeeEEEEeChHhcc
Confidence            89999997 99999999999999 8     99999999997653

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.05  E-value=0.016  Score=60.85  Aligned_cols=39  Identities=23%  Similarity=0.362  Sum_probs=35.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      .++|.|+|.|.+|..++..|.+. |     +++++++.|++++++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~-g-----~~vvvID~d~~~v~~  438 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMAN-K-----MRITVLERDISAVNL  438 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhC-C-----CCEEEEECCHHHHHH
Confidence            46899999999999999999988 7     999999999987654

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=96.04  E-value=0.06  Score=51.97  Aligned_cols=36  Identities=14%  Similarity=0.163  Sum_probs=27.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~   83 (333)
                      ++||+|||+|.+|+.+...+.+. .    +.++. +++++++
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~-~----~velvAVvdid~e   40 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRS-E----HLEPGAMVGIDPE   40 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcC-C----CcEEEEEEeCChh
Confidence            47999999999999988887654 2    15654 6788775

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.97  E-value=0.045  Score=53.63  Aligned_cols=34  Identities=29%  Similarity=0.361  Sum_probs=30.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||.|||+|.+|+.+|..|+.. |.    .+++++|.+.
T Consensus        25 ~~VlVvG~GglGs~va~~La~a-Gv----g~i~lvD~D~   58 (339)
T PRK07688         25 KHVLIIGAGALGTANAEMLVRA-GV----GKVTIVDRDY   58 (339)
T ss_pred             CcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCc
Confidence            6999999999999999999999 82    3899999975

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.88  E-value=0.054  Score=53.01  Aligned_cols=24  Identities=38%  Similarity=0.686  Sum_probs=21.8

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHh
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDS   65 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~   65 (333)
                      +|+||+|+|| |..|.-+...|.+.
T Consensus         3 ~~~~IaIvGATG~vG~eLlrlL~~~   27 (336)
T PRK05671          3 QPLDIAVVGATGTVGEALVQILEER   27 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhhC
Confidence            4589999997 99999999999976

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=95.86  E-value=0.034  Score=53.58  Aligned_cols=44  Identities=23%  Similarity=0.229  Sum_probs=34.7

Q ss_pred             HHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          154 LQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       154 ~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                      +++.++++|+||.++-+...+.++..+....     ++++++..-|+..
T Consensus       102 l~~li~~~DvV~d~tDn~esR~L~~~~~~~~-----~k~~I~aalGfdg  145 (307)
T cd01486         102 LEELIKDHDVIFLLTDSRESRWLPTLLSAAK-----NKLVINAALGFDS  145 (307)
T ss_pred             HHHHHhhCCEEEECCCCHHHHHHHHHHHHHh-----CCcEEEEEeccce
Confidence            4567899999999999999998888887654     3467777767664

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.83  E-value=0.066  Score=48.91  Aligned_cols=34  Identities=24%  Similarity=0.227  Sum_probs=30.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .+|+|||+|.+|+.+|..|+.. |.    .+++++|.+.
T Consensus        29 ~~V~ViG~GglGs~ia~~La~~-Gv----g~i~lvD~D~   62 (212)
T PRK08644         29 AKVGIAGAGGLGSNIAVALARS-GV----GNLKLVDFDV   62 (212)
T ss_pred             CCEEEECcCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence            6899999999999999999999 82    4699999884

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=95.80  E-value=0.094  Score=50.23  Aligned_cols=36  Identities=17%  Similarity=0.205  Sum_probs=27.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRS   84 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~   84 (333)
                      +||+|||+|.||+.++..+.+. .    +.++. +++++++.
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~-~----~~elvaV~d~d~es   38 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRS-E----HLEMVAMVGIDPES   38 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhC-C----CcEEEEEEeCCccc
Confidence            6999999999999887777654 2    15544 67888764

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.79  E-value=0.022  Score=43.33  Aligned_cols=35  Identities=26%  Similarity=0.437  Sum_probs=32.5

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      ||+|||+|..|.-+|..|++. |     .+|+++.+.+...
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~-g-----~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAEL-G-----KEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHT-T-----SEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHh-C-----cEEEEEeccchhh
Confidence            789999999999999999998 8     8999999998765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.68  E-value=0.031  Score=53.50  Aligned_cols=29  Identities=17%  Similarity=0.257  Sum_probs=27.6

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEE
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIW   78 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~   78 (333)
                      ++|+|||. |.||..+|..|.++ |     +.|++|
T Consensus       159 k~v~vIG~S~ivG~Pla~lL~~~-g-----atVtv~  188 (284)
T PRK14179        159 KHAVVIGRSNIVGKPMAQLLLDK-N-----ATVTLT  188 (284)
T ss_pred             CEEEEECCCCcCcHHHHHHHHHC-C-----CEEEEE
Confidence            79999998 99999999999998 8     899999

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.67  E-value=0.075  Score=49.02  Aligned_cols=34  Identities=32%  Similarity=0.386  Sum_probs=30.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCe--eEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~--~V~l~~r~~   82 (333)
                      +||.|+|+|.+|.+++..|.+. |.    .  ++.+++|+.
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~-G~----~~~~i~ivdr~g   61 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAA-GA----KPENIVVVDSKG   61 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHc-Cc----CcceEEEEeCCC
Confidence            6999999999999999999988 72    2  699999984

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=95.58  E-value=0.075  Score=53.92  Aligned_cols=92  Identities=18%  Similarity=0.261  Sum_probs=63.1

Q ss_pred             CCceEEEECC----CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchh
Q 019978           42 DPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV  117 (333)
Q Consensus        42 ~~~kI~IIGa----G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~  117 (333)
                      ++.+|+|||+    |.+|..+...|.+. |     +.-.+|..++.. ++                          ..  
T Consensus         6 ~p~siavvGaS~~~~~~g~~~~~~l~~~-g-----f~g~v~~Vnp~~-~~--------------------------i~--   50 (447)
T TIGR02717         6 NPKSVAVIGASRDPGKVGYAIMKNLIEG-G-----YKGKIYPVNPKA-GE--------------------------IL--   50 (447)
T ss_pred             CCCEEEEEccCCCCCchHHHHHHHHHhC-C-----CCCcEEEECCCC-Cc--------------------------cC--
Confidence            3579999999    88999999999887 7     533344444421 10                          00  


Q ss_pred             hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEee
Q 019978          118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA  197 (333)
Q Consensus       118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~  197 (333)
                                                   .+.+..++++.-+..|+++++||+..+.+++++.... +    -..++.++
T Consensus        51 -----------------------------G~~~~~sl~~lp~~~Dlavi~vp~~~~~~~l~e~~~~-g----v~~~vi~s   96 (447)
T TIGR02717        51 -----------------------------GVKAYPSVLEIPDPVDLAVIVVPAKYVPQVVEECGEK-G----VKGAVVIT   96 (447)
T ss_pred             -----------------------------CccccCCHHHCCCCCCEEEEecCHHHHHHHHHHHHhc-C----CCEEEEEC
Confidence                                         1223344555445689999999999999999998763 2    23566678


Q ss_pred             ecCcc
Q 019978          198 KGVEA  202 (333)
Q Consensus       198 kGi~~  202 (333)
                      .|+..
T Consensus        97 ~gf~e  101 (447)
T TIGR02717        97 AGFKE  101 (447)
T ss_pred             CCccc
Confidence            88875

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>CHL00194 ycf39 Ycf39; Provisional

Probab=95.57  E-value=0.02  Score=54.67  Aligned_cols=35  Identities=26%  Similarity=0.392  Sum_probs=31.7

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      |||.|.|+ |.+|+.++..|.+. |     |+|+..+|+.+.
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~-g-----~~V~~l~R~~~~   36 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDE-G-----YQVRCLVRNLRK   36 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-C-----CeEEEEEcChHH
Confidence            69999996 99999999999999 8     999999998643

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.51  E-value=0.12  Score=46.57  Aligned_cols=34  Identities=26%  Similarity=0.274  Sum_probs=30.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||.|+|+|.+|+.++..|+.. |.    .+++++|.+.
T Consensus        20 s~VlviG~gglGsevak~L~~~-GV----g~i~lvD~d~   53 (198)
T cd01485          20 AKVLIIGAGALGAEIAKNLVLA-GI----DSITIVDHRL   53 (198)
T ss_pred             CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEECCc
Confidence            6999999999999999999999 83    5799998875

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=95.51  E-value=0.084  Score=43.06  Aligned_cols=48  Identities=25%  Similarity=0.353  Sum_probs=33.2

Q ss_pred             EEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       149 ~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                      ..++++++.+.  +.|+||.|+++....+.+.++   +..   +..||+..||...
T Consensus        46 ~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~---L~~---G~~VVt~nk~ala   95 (117)
T PF03447_consen   46 AFTTDLEELIDDPDIDVVVECTSSEAVAEYYEKA---LER---GKHVVTANKGALA   95 (117)
T ss_dssp             CEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHH---HHT---TCEEEES-HHHHH
T ss_pred             cccCCHHHHhcCcCCCEEEECCCchHHHHHHHHH---HHC---CCeEEEECHHHhh
Confidence            35678888777  899999999887777665544   444   6789999888554

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK08328 hypothetical protein; Provisional

Probab=95.50  E-value=0.079  Score=48.98  Aligned_cols=38  Identities=21%  Similarity=0.274  Sum_probs=31.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .||+|+|+|..|+.++..|+.. |.    .+++++|.+.-...
T Consensus        28 ~~VlIiG~GGlGs~ia~~La~~-Gv----g~i~lvD~D~ve~s   65 (231)
T PRK08328         28 AKVAVVGVGGLGSPVAYYLAAA-GV----GRILLIDEQTPELS   65 (231)
T ss_pred             CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCccChh
Confidence            6899999999999999999999 82    47889987764333

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=95.46  E-value=0.09  Score=49.61  Aligned_cols=126  Identities=17%  Similarity=0.196  Sum_probs=76.2

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeE-EEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      +|||+|.|+ |.||..+.+.+... .    ++++ -.++|.+....  .        ...           ..+-+..  
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~-~----~~~L~aa~~~~~~~~~--g--------~d~-----------ge~~g~~--   53 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEA-P----DLELVAAFDRPGSLSL--G--------SDA-----------GELAGLG--   53 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcC-C----CceEEEEEecCCcccc--c--------cch-----------hhhcccc--
Confidence            689999998 99999999999877 3    1443 34566553210  0        000           0011100  


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                          .                    -.+.+++|+.....++|++|=.+-+....+.++....+      +..+|.-|.|+
T Consensus        54 ----~--------------------~gv~v~~~~~~~~~~~DV~IDFT~P~~~~~~l~~~~~~------~~~lVIGTTGf  103 (266)
T COG0289          54 ----L--------------------LGVPVTDDLLLVKADADVLIDFTTPEATLENLEFALEH------GKPLVIGTTGF  103 (266)
T ss_pred             ----c--------------------cCceeecchhhcccCCCEEEECCCchhhHHHHHHHHHc------CCCeEEECCCC
Confidence                0                    14556677777778999999888777776666655442      34566677799


Q ss_pred             cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH
Q 019978          201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE  239 (333)
Q Consensus       201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e  239 (333)
                      +.+.     .    +.+++..-    .+.++..||++.-
T Consensus       104 ~~e~-----~----~~l~~~a~----~v~vv~a~NfSiG  129 (266)
T COG0289         104 TEEQ-----L----EKLREAAE----KVPVVIAPNFSLG  129 (266)
T ss_pred             CHHH-----H----HHHHHHHh----hCCEEEeccchHH
Confidence            8763     1    22333221    1347788888753

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=95.42  E-value=0.078  Score=51.88  Aligned_cols=35  Identities=20%  Similarity=0.190  Sum_probs=27.9

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ++||+|+|+ |.-|.-|...|+.+ .    ..++.++..++
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~H-p----~ve~~~~ss~~   37 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGH-P----DVELILISSRE   37 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcC-C----CeEEEEeechh
Confidence            689999997 99999999999887 3    25666665554

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=95.41  E-value=0.021  Score=56.44  Aligned_cols=33  Identities=24%  Similarity=0.356  Sum_probs=31.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .+|+|||+|.+|.+.|..|++. |     ++|+++++..
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~-g-----~~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQR-G-----YQVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence            4999999999999999999999 8     9999999975

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=95.41  E-value=0.09  Score=51.64  Aligned_cols=40  Identities=15%  Similarity=0.213  Sum_probs=28.8

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCee-EEEEecCCcchh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~   86 (333)
                      +..||+|||+ .||...+..+... ..   +.+ |-++++++++++
T Consensus         2 ~~~rVgViG~-~~G~~h~~al~~~-~~---~~eLvaV~d~~~erA~   42 (343)
T TIGR01761         2 DVQSVVVCGT-RFGQFYLAAFAAA-PE---RFELAGILAQGSERSR   42 (343)
T ss_pred             CCcEEEEEeH-HHHHHHHHHHHhC-CC---CcEEEEEEcCCHHHHH
Confidence            4579999999 6899888888765 20   144 457888877654

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.38  E-value=0.033  Score=58.86  Aligned_cols=40  Identities=20%  Similarity=0.406  Sum_probs=35.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA   88 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~   88 (333)
                      ..+|.|+|.|.+|..++..|.++ |     +++++++.|+++++++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~-g-----~~vvvID~d~~~v~~~  439 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSS-G-----VKMTVLDHDPDHIETL  439 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhC-C-----CCEEEEECCHHHHHHH
Confidence            46899999999999999999998 7     8999999999877653

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=95.25  E-value=0.071  Score=48.35  Aligned_cols=32  Identities=28%  Similarity=0.360  Sum_probs=29.6

Q ss_pred             EEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        46 I~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      |+|+|+ |..|..++..|.+. +     ++|++..|+..
T Consensus         1 I~V~GatG~~G~~v~~~L~~~-~-----~~V~~l~R~~~   33 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSA-G-----FSVRALVRDPS   33 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-T-----GCEEEEESSSH
T ss_pred             CEEECCccHHHHHHHHHHHhC-C-----CCcEEEEeccc
Confidence            789997 99999999999998 7     99999999984

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=95.25  E-value=0.068  Score=51.01  Aligned_cols=60  Identities=15%  Similarity=0.114  Sum_probs=41.2

Q ss_pred             cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCee-EEEEecCC
Q 019978           15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPG   82 (333)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~-V~l~~r~~   82 (333)
                      +|-++-.|-.-.==+..+++.+.  .-..+++.|+|+|-.|.+++..|++. |     .. |++++|++
T Consensus       100 ~g~l~G~NTD~~G~~~~l~~~~~--~~~~k~vlI~GAGGagrAia~~La~~-G-----~~~V~I~~R~~  160 (289)
T PRK12548        100 DGKLTGHITDGLGFVRNLREHGV--DVKGKKLTVIGAGGAATAIQVQCALD-G-----AKEITIFNIKD  160 (289)
T ss_pred             CCEEEEEecCHHHHHHHHHhcCC--CcCCCEEEEECCcHHHHHHHHHHHHC-C-----CCEEEEEeCCc
Confidence            44444455544444444544322  11235899999999999999999988 8     64 99999997

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.19  E-value=0.16  Score=47.38  Aligned_cols=35  Identities=20%  Similarity=0.280  Sum_probs=30.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ..||.|||+|.+|+.++..|+.. |.    .+++++|.+.
T Consensus        32 ~~~VliiG~GglGs~va~~La~~-Gv----g~i~lvD~D~   66 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAAA-GV----GTLTLVDFDT   66 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCE
Confidence            36999999999999999999999 82    4788888875

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=95.12  E-value=0.028  Score=55.39  Aligned_cols=34  Identities=24%  Similarity=0.375  Sum_probs=31.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      |+|+|||+|.+|.+.|..|++. |     ++|++++++..
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~-g-----~~V~vle~~~~   34 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQA-G-----HEVTVIDRQPG   34 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEeCCCc
Confidence            6899999999999999999999 8     99999999753

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.11  E-value=0.38  Score=47.74  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=30.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||.|+|+|.+|+.++..|+.. |.    .+++++|.+.
T Consensus        42 ~~VliiG~GglG~~v~~~La~~-Gv----g~i~ivD~D~   75 (370)
T PRK05600         42 ARVLVIGAGGLGCPAMQSLASA-GV----GTITLIDDDT   75 (370)
T ss_pred             CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEeCCE
Confidence            6899999999999999999999 82    4799998884

>PRK06153 hypothetical protein; Provisional

Probab=95.07  E-value=0.14  Score=51.01  Aligned_cols=34  Identities=21%  Similarity=0.295  Sum_probs=29.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||+|||+|..|+.++..|++. |.    -+++++|.+.
T Consensus       177 ~~VaIVG~GG~GS~Va~~LAR~-GV----geI~LVD~D~  210 (393)
T PRK06153        177 QRIAIIGLGGTGSYILDLVAKT-PV----REIHLFDGDD  210 (393)
T ss_pred             CcEEEEcCCccHHHHHHHHHHc-CC----CEEEEECCCE
Confidence            5999999999999999999999 82    4788888774

>PRK06753 hypothetical protein; Provisional

Probab=95.04  E-value=0.03  Score=54.37  Aligned_cols=34  Identities=26%  Similarity=0.512  Sum_probs=32.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      |+|.|||+|.-|.++|..|++. |     ++|+++.++++
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~-g-----~~v~v~E~~~~   34 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQ-G-----HEVKVFEKNES   34 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence            6899999999999999999999 8     99999999875

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=94.98  E-value=0.17  Score=47.12  Aligned_cols=37  Identities=22%  Similarity=0.263  Sum_probs=31.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      .||.|+|+|.+|+.++..|+.. |.    .+++++|.+.-..
T Consensus        25 ~~VlvvG~GglGs~va~~La~~-Gv----g~i~lvD~D~ve~   61 (240)
T TIGR02355        25 SRVLIVGLGGLGCAASQYLAAA-GV----GNLTLLDFDTVSL   61 (240)
T ss_pred             CcEEEECcCHHHHHHHHHHHHc-CC----CEEEEEeCCcccc
Confidence            6999999999999999999999 82    4788988876433

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=94.96  E-value=0.025  Score=55.83  Aligned_cols=46  Identities=22%  Similarity=0.242  Sum_probs=38.5

Q ss_pred             hHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           30 DELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        30 ~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +||+-+.+++.  .++|.|||+|.-|.++|..|++. |     ++|+++++.+.
T Consensus         7 ~~~~~~~~~~~--~~dV~IvGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~   52 (415)
T PRK07364          7 TSPTLPSTRSL--TYDVAIVGGGIVGLTLAAALKDS-G-----LRIALIEAQPA   52 (415)
T ss_pred             CCCCCCCCCcc--ccCEEEECcCHHHHHHHHHHhcC-C-----CEEEEEecCCc
Confidence            45555666555  46899999999999999999999 8     99999999764

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=94.95  E-value=0.17  Score=49.74  Aligned_cols=41  Identities=10%  Similarity=0.055  Sum_probs=30.6

Q ss_pred             HHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       156 ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                      +++.++|+||+|+|...-.++..++..   .   ++.||.++.-+-.
T Consensus        65 ~~~~~~D~vf~a~p~~~s~~~~~~~~~---~---g~~VIDlS~~fR~  105 (344)
T PLN02383         65 DSFDGVDIALFSAGGSISKKFGPIAVD---K---GAVVVDNSSAFRM  105 (344)
T ss_pred             HHHcCCCEEEECCCcHHHHHHHHHHHh---C---CCEEEECCchhhc
Confidence            346789999999999988877776543   2   5788888755543

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.94  E-value=0.35  Score=47.67  Aligned_cols=34  Identities=26%  Similarity=0.304  Sum_probs=30.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||.|+|+|..|+.++..|+.. |.    .+++++|.+.
T Consensus        29 ~~VlivG~GGlGs~~a~~La~~-Gv----g~i~lvD~D~   62 (355)
T PRK05597         29 AKVAVIGAGGLGSPALLYLAGA-GV----GHITIIDDDT   62 (355)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence            6999999999999999999999 82    4789998885

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=94.86  E-value=0.096  Score=50.12  Aligned_cols=68  Identities=18%  Similarity=0.180  Sum_probs=46.3

Q ss_pred             cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +|-++-.|-.-.-=+..+++...-....-+++.|+|||-.+.+++..|++. |.    .++++++|+.+++++
T Consensus        98 ~g~l~G~NTD~~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-g~----~~i~V~NRt~~ra~~  165 (283)
T COG0169          98 DGKLRGYNTDGIGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-GA----KRITVVNRTRERAEE  165 (283)
T ss_pred             CCEEEEEcCCHHHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-CC----CEEEEEeCCHHHHHH
Confidence            455555555444444444442211111237899999999999999999999 82    479999999987654

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.84  E-value=0.45  Score=47.09  Aligned_cols=34  Identities=26%  Similarity=0.309  Sum_probs=30.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||.|+|+|..|+.++..|+.. |.    -+++++|++.
T Consensus       136 ~~VlvvG~GG~Gs~ia~~La~~-Gv----g~i~lvD~d~  169 (376)
T PRK08762        136 ARVLLIGAGGLGSPAALYLAAA-GV----GTLGIVDHDV  169 (376)
T ss_pred             CcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence            6899999999999999999999 82    3799999883

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.78  E-value=0.12  Score=41.64  Aligned_cols=34  Identities=18%  Similarity=0.251  Sum_probs=30.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ..+|.|||+|.+|..=+..|.+. |     .+|++++.+.
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~-g-----A~v~vis~~~   40 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEA-G-----AKVTVISPEI   40 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCC-T-----BEEEEEESSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCch
Confidence            36999999999999999999998 8     8999999885

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=94.76  E-value=0.15  Score=49.42  Aligned_cols=39  Identities=21%  Similarity=0.270  Sum_probs=29.1

Q ss_pred             HhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       157 a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                      ...++|++|+|+|...-.++..++..   .   ++.||.++.-+-
T Consensus        47 ~~~~~DvvFlalp~~~s~~~~~~~~~---~---g~~VIDlSadfR   85 (313)
T PRK11863         47 LLNAADVAILCLPDDAAREAVALIDN---P---ATRVIDASTAHR   85 (313)
T ss_pred             hhcCCCEEEECCCHHHHHHHHHHHHh---C---CCEEEECChhhh
Confidence            34679999999999987777777643   2   577888775554

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=94.76  E-value=0.23  Score=48.90  Aligned_cols=39  Identities=8%  Similarity=0.093  Sum_probs=29.5

Q ss_pred             HhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       157 a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                      .+.+.|++|+|+|...-.++..++..   .   ++.||.++.-+-
T Consensus        65 ~~~~~Divf~a~~~~~s~~~~~~~~~---~---G~~VID~Ss~fR  103 (347)
T PRK06728         65 SFEGVDIAFFSAGGEVSRQFVNQAVS---S---GAIVIDNTSEYR  103 (347)
T ss_pred             HhcCCCEEEECCChHHHHHHHHHHHH---C---CCEEEECchhhc
Confidence            35789999999999988877777543   2   578888775554

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=94.72  E-value=0.048  Score=51.53  Aligned_cols=35  Identities=26%  Similarity=0.318  Sum_probs=30.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      .+|+|||+|.-|.++|..|+++ |     ++|+++.+.++.
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~-G-----~~v~i~E~~~~~   36 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARA-G-----IDVTIIERRPDP   36 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHT-T-----CEEEEEESSSSC
T ss_pred             ceEEEECCCHHHHHHHHHHHhc-c-----cccccchhcccc
Confidence            4799999999999999999999 8     999999998764

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK10206 putative oxidoreductase; Provisional

Probab=94.70  E-value=0.14  Score=50.04  Aligned_cols=33  Identities=15%  Similarity=0.162  Sum_probs=24.8

Q ss_pred             EEecCHHHHhc--CCCEEEEecCchhHHHHHHHHH
Q 019978          149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS  181 (333)
Q Consensus       149 ~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~  181 (333)
                      .+.+|.++.++  +.|+|++++|.....++.....
T Consensus        51 ~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~~~al   85 (344)
T PRK10206         51 HFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKRAL   85 (344)
T ss_pred             cccCCHHHHhcCCCCCEEEEeCCchHHHHHHHHHH
Confidence            34577888775  5799999999987766665544

>PRK06349 homoserine dehydrogenase; Provisional

Probab=94.69  E-value=0.15  Score=51.50  Aligned_cols=23  Identities=30%  Similarity=0.556  Sum_probs=20.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDS   65 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~   65 (333)
                      ++||+|+|+|.+|..++..|.++
T Consensus         3 ~i~VgiiG~G~VG~~~~~~L~~~   25 (426)
T PRK06349          3 PLKVGLLGLGTVGSGVVRILEEN   25 (426)
T ss_pred             eEEEEEEeeCHHHHHHHHHHHHh
Confidence            47999999999999999888654

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=94.67  E-value=0.046  Score=53.66  Aligned_cols=36  Identities=22%  Similarity=0.287  Sum_probs=32.6

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ..+.+|.|||+|..|.++|..|++. |     ++|+++++.+
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~-G-----~~v~liE~~~   39 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADA-G-----LSVALVEGRE   39 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcC-C-----CEEEEEeCCC
Confidence            4556899999999999999999999 8     9999999975

>PRK05868 hypothetical protein; Validated

Probab=94.64  E-value=0.043  Score=53.92  Aligned_cols=36  Identities=19%  Similarity=0.138  Sum_probs=32.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      |++|+|||+|..|.++|..|++. |     ++|+++++.++.
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~-G-----~~v~viE~~~~~   36 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRH-G-----YSVTMVERHPGL   36 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC-C-----CCEEEEcCCCCC
Confidence            57999999999999999999999 8     999999998753

>PRK06847 hypothetical protein; Provisional

Probab=94.56  E-value=0.053  Score=52.60  Aligned_cols=36  Identities=17%  Similarity=0.237  Sum_probs=32.7

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .+++|+|||+|.-|.++|..|++. |     ++|+++.++++
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~-g-----~~v~v~E~~~~   38 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRA-G-----IAVDLVEIDPE   38 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence            357999999999999999999998 8     99999998764

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.50  E-value=0.12  Score=49.47  Aligned_cols=32  Identities=16%  Similarity=0.211  Sum_probs=27.9

Q ss_pred             ceEEEECCCH-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           44 LRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        44 ~kI~IIGaG~-mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      ++|+|||.|. +|..+|..|... |     ..|+++.+.
T Consensus       159 k~vvVIGrs~~VG~pla~lL~~~-g-----atVtv~~s~  191 (286)
T PRK14175        159 KNAVVIGRSHIVGQPVSKLLLQK-N-----ASVTILHSR  191 (286)
T ss_pred             CEEEEECCCchhHHHHHHHHHHC-C-----CeEEEEeCC
Confidence            7999999988 999999999988 7     788887653

>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.49  E-value=0.52  Score=45.98  Aligned_cols=240  Identities=17%  Similarity=0.196  Sum_probs=133.9

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      +++.++.++|+|...--+|.-+..+ |    +..+-+++|...+-++     +.+.++...         ..++++.. .
T Consensus         2 ~~m~~vLllGtGpvaIQlAv~l~~h-~----d~~lg~~~r~s~rse~-----l~qala~~~---------ql~l~~q~-e   61 (431)
T COG4408           2 HNMLPVLLLGTGPVAIQLAVDLSAH-G----DARLGLYNRPSTRSER-----LKQALALTP---------QLYLQGQG-E   61 (431)
T ss_pred             CcccceeEeecCcHHHHHHHHHHhc-c----CceeeccCCCCchhHH-----HHHHHhcCC---------eEEEEecc-H
Confidence            4577999999999999999999888 6    2678889887754333     333333221         12232210 0


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHh-hhhccCCCCEEEEeeec
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKG  199 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~-~l~~~~~~~~Ivs~~kG  199 (333)
                      . .+.+      +-.+.++         .+..|++++..+-+-+|+|||.++.-+++.+|.- .++.   -+.+|-++..
T Consensus        62 a-hr~l------eg~~~id---------~~~kd~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~---vk~viLiSpt  122 (431)
T COG4408          62 A-HRQL------EGSVTID---------CYIKDLAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQ---VKSVILISPT  122 (431)
T ss_pred             H-HHhh------cCceehh---------HHHhhHHHhhchhheEEEEeecHHHHHHHhcCCHhHhcc---ccEEEEeccc
Confidence            0 0000      0001111         1346788888899999999999999999999863 2332   3344444444


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCC-----------cEEEEcCCCchHHHhccCceeEE-EeCChhhHHHHHHHhCCC
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIE-----------NILYLGGPNIASEIYNKEYANAR-ICGAEKWRKPLAKFLRRP  267 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~-----------~~~vl~GP~~a~ev~~~~~~~~~-~~~~~~~~~~l~~ll~~~  267 (333)
                      ++..       ..++.++.+ +|....           .+.--.-|+++-.-+-++-.+.. --++...++.+..+|...
T Consensus       123 fGsn-------~lv~~~mnk-~~~daeViS~SsY~~dTk~id~~~p~~alTkavKkriYlgs~~~ns~~~e~l~~v~aq~  194 (431)
T COG4408         123 FGSN-------LLVQNLMNK-AGRDAEVISLSSYYADTKYIDAEQPNRALTKAVKKRIYLGSQHGNSGSAEMLTAVLAQH  194 (431)
T ss_pred             cccc-------HHHHHHHhh-hCCCceEEEeehhcccceeecccCcchHHHHHHhHheeeccCCCCChHHHHHHHHHHhc
Confidence            4432       223333322 332210           01111235554322211111111 123456788999999999


Q ss_pred             CeEEEecCChhHHHHHH--------HHHHHHHHHHHHHhccC---------CCCCc--cHHHHHHHHHHHHHHH-HHCCC
Q 019978          268 HFTVWDNGDLVTHEVMG--------GLKNVYAIGAGMVAALT---------NESAT--SKSVYFAHCTSEMVVM-HGMGR  327 (333)
Q Consensus       268 ~~~v~~s~Di~gve~~~--------alkNv~Ai~~Gi~~gl~---------~~~~n--~~~~l~~~~~~E~~~l-~~~G~  327 (333)
                      ++.+...+....+|--.        .+.|=.++.+ |..+..         -.|.-  ..-.-|..--+|+..+ .++|.
T Consensus       195 ~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~a-if~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~v  273 (431)
T COG4408         195 GIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQA-IFYPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGV  273 (431)
T ss_pred             CCceEEcCChhhhhhcccceeecCcchhhhhHHHH-HhCCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999988443        2444444432 222111         11222  2224566777899998 89986


Q ss_pred             C
Q 019978          328 S  328 (333)
Q Consensus       328 ~  328 (333)
                      .
T Consensus       274 e  274 (431)
T COG4408         274 E  274 (431)
T ss_pred             C
Confidence            5

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=94.48  E-value=0.39  Score=46.63  Aligned_cols=36  Identities=25%  Similarity=0.306  Sum_probs=30.5

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      ||.|||+|.+|+.++..|+.. |.    .+++++|.+.=..
T Consensus         1 kVlIVGaGGlG~EiaKnLal~-Gv----g~ItIvD~D~Ve~   36 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLT-GF----GEIHIIDLDTIDL   36 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHh-cC----CeEEEEcCCCcch
Confidence            689999999999999999999 83    5799998876333

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=94.48  E-value=0.2  Score=47.89  Aligned_cols=62  Identities=18%  Similarity=0.214  Sum_probs=41.2

Q ss_pred             cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +|-++-.|-.-.==+..++.. +.. ...+++.|+|+|-.+.+++..|+.. |.    .+|++++|+++
T Consensus        98 ~g~l~G~NTD~~Gf~~~l~~~-~~~-~~~k~vlvlGaGGaarAi~~~l~~~-g~----~~i~i~nRt~~  159 (288)
T PRK12749         98 DGYLRGYNTDGTGHIRAIKES-GFD-IKGKTMVLLGAGGASTAIGAQGAIE-GL----KEIKLFNRRDE  159 (288)
T ss_pred             CCEEEEEecCHHHHHHHHHhc-CCC-cCCCEEEEECCcHHHHHHHHHHHHC-CC----CEEEEEeCCcc
Confidence            344444454444434444432 211 1235899999999999999999887 72    48999999965

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=94.42  E-value=0.15  Score=49.95  Aligned_cols=39  Identities=15%  Similarity=0.162  Sum_probs=28.9

Q ss_pred             HHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       156 ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                      +.+.++|++|+|+|+....+++..+..   .   +..||+++.-+
T Consensus        57 ~~~~~~D~v~~a~g~~~s~~~a~~~~~---~---G~~VID~ss~~   95 (339)
T TIGR01296        57 ESFEGIDIALFSAGGSVSKEFAPKAAK---C---GAIVIDNTSAF   95 (339)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHHHH---C---CCEEEECCHHH
Confidence            345789999999999988888776643   3   56788766433

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=94.37  E-value=0.29  Score=47.78  Aligned_cols=38  Identities=32%  Similarity=0.330  Sum_probs=27.3

Q ss_pred             HhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       157 a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                      ...++|+|++|+|+....++.+.+..   .   ++.+|.++.-+
T Consensus        70 ~~~~~DvVf~a~p~~~s~~~~~~~~~---~---G~~VIDlsg~f  107 (341)
T TIGR00978        70 ASKDVDIVFSALPSEVAEEVEPKLAE---A---GKPVFSNASNH  107 (341)
T ss_pred             HhccCCEEEEeCCHHHHHHHHHHHHH---C---CCEEEECChhh
Confidence            45789999999999988877766543   2   45666665443

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PRK08163 salicylate hydroxylase; Provisional

Probab=94.36  E-value=0.062  Score=52.61  Aligned_cols=35  Identities=17%  Similarity=0.306  Sum_probs=32.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +++|+|||+|..|.++|..|++. |     ++|+++++.++
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~-g-----~~v~v~Er~~~   38 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQ-G-----IKVKLLEQAAE   38 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhC-C-----CcEEEEeeCcc
Confidence            46999999999999999999999 8     99999999875

>PRK06270 homoserine dehydrogenase; Provisional

Probab=94.33  E-value=0.2  Score=48.96  Aligned_cols=48  Identities=17%  Similarity=0.231  Sum_probs=30.7

Q ss_pred             ecCHHHHhc--CCCEEEEecCchh--HHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          151 VTNLQEAVW--DADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       151 t~d~~ea~~--~aDlIIlaVps~~--~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                      +.|+++.+.  +.|+|+.++|+..  .+...+.+...+..   +..||+..|+..
T Consensus        78 ~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~---GkhVVtaNK~pl  129 (341)
T PRK06270         78 EISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALER---GKHVVTSNKGPL  129 (341)
T ss_pred             cCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHC---CCEEEcCCcHHH
Confidence            457777663  6899999999854  23334444555555   677887666543

>PRK07588 hypothetical protein; Provisional

Probab=94.23  E-value=0.059  Score=52.89  Aligned_cols=34  Identities=21%  Similarity=0.279  Sum_probs=31.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      |+|+|||+|..|.++|..|++. |     ++|+++.+.++
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRY-G-----HEPTLIERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHC-C-----CceEEEeCCCC
Confidence            5899999999999999999999 8     99999998764

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=94.19  E-value=0.49  Score=45.35  Aligned_cols=35  Identities=14%  Similarity=0.126  Sum_probs=30.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .||.|+|+|.+|+.+|..|+.. |.    ..++++|.+.=
T Consensus        20 s~VLIvG~gGLG~EiaKnLala-GV----g~itI~D~d~v   54 (286)
T cd01491          20 SNVLISGLGGLGVEIAKNLILA-GV----KSVTLHDTKPC   54 (286)
T ss_pred             CcEEEEcCCHHHHHHHHHHHHc-CC----CeEEEEcCCcc
Confidence            6999999999999999999999 83    47999988763

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=94.14  E-value=0.29  Score=51.71  Aligned_cols=45  Identities=24%  Similarity=0.258  Sum_probs=34.4

Q ss_pred             CHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       153 d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                      ++.+.++++|+||.|+-+...+.++..+....     ++++|+.+-|+..
T Consensus       441 ~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~-----~kplI~aAlGfdg  485 (664)
T TIGR01381       441 RLEQLIKDHDVVFLLLDSREARWLPTVLCSRH-----KKIAISAALGFDS  485 (664)
T ss_pred             HHHHHHhhCCEEEECCCCHHHHHHHHHHHHHh-----CCCEEEEEeccce
Confidence            35567889999999999999998888877543     3567777667654

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK07538 hypothetical protein; Provisional

Probab=94.07  E-value=0.066  Score=53.13  Aligned_cols=34  Identities=15%  Similarity=0.390  Sum_probs=31.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      |+|+|||+|.-|.++|..|++. |     ++|+++.+.++
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~   34 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQR-G-----IEVVVFEAAPE   34 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-C-----CcEEEEEcCCc
Confidence            6899999999999999999999 8     99999999874

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=94.01  E-value=0.33  Score=47.60  Aligned_cols=98  Identities=15%  Similarity=0.122  Sum_probs=60.7

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      +.+||+|||| |..|.-|...|++. . + +..++.++..+.. +-                         +.+. +   
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~-~-h-P~~~l~~laS~~s-aG-------------------------~~~~-~---   49 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAER-Q-F-PVGELYALASEES-AG-------------------------ETLR-F---   49 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcC-C-C-CceEEEEEEccCc-CC-------------------------ceEE-E---
Confidence            5689999998 99999999999984 2 0 1146666644432 11                         0111 0   


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHH-HhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE-AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~e-a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                       ..                      ..+.+. ++++ ...++|++|+|+|...-.++..++..   .   ++.||.++.-
T Consensus        50 -~~----------------------~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s~~~~~~~~~---~---g~~VIDlS~~   99 (336)
T PRK08040         50 -GG----------------------KSVTVQ-DAAEFDWSQAQLAFFVAGREASAAYAEEATN---A---GCLVIDSSGL   99 (336)
T ss_pred             -CC----------------------cceEEE-eCchhhccCCCEEEECCCHHHHHHHHHHHHH---C---CCEEEECChH
Confidence             00                      012332 2222 23689999999999977777776643   2   5788888755


Q ss_pred             Ccc
Q 019978          200 VEA  202 (333)
Q Consensus       200 i~~  202 (333)
                      +-.
T Consensus       100 fRl  102 (336)
T PRK08040        100 FAL  102 (336)
T ss_pred             hcC
Confidence            543

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=93.96  E-value=0.12  Score=50.01  Aligned_cols=43  Identities=16%  Similarity=0.149  Sum_probs=34.6

Q ss_pred             cCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           38 KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        38 ~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      -+...+-||+|||.|..|+--|+...-- |     -+|++.+++.+++.
T Consensus       163 vpGV~~~kv~iiGGGvvgtnaAkiA~gl-g-----A~Vtild~n~~rl~  205 (371)
T COG0686         163 VPGVLPAKVVVLGGGVVGTNAAKIAIGL-G-----ADVTILDLNIDRLR  205 (371)
T ss_pred             CCCCCCccEEEECCccccchHHHHHhcc-C-----CeeEEEecCHHHHh
Confidence            3445567999999999999988887655 6     89999999986543

>PRK07236 hypothetical protein; Provisional

Probab=93.95  E-value=0.093  Score=51.52  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=32.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +++|+|||+|.-|.++|..|++. |     ++|+++.+.+.
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~   40 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRA-G-----WDVDVFERSPT   40 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence            37999999999999999999999 8     99999999864

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=93.92  E-value=0.54  Score=42.72  Aligned_cols=33  Identities=18%  Similarity=0.221  Sum_probs=30.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      +||.|||+|.+|..-+..|.+. |     .+|++++.+.
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~-g-----a~VtVvsp~~   42 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKA-G-----AQLRVIAEEL   42 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHC-C-----CEEEEEcCCC
Confidence            5999999999999999999998 8     8999998765

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=93.89  E-value=0.11  Score=38.67  Aligned_cols=30  Identities=23%  Similarity=0.400  Sum_probs=27.2

Q ss_pred             EECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        48 IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      |||+|.-|.+.|..|++. |     ++|+++.++..
T Consensus         1 IiGaG~sGl~aA~~L~~~-g-----~~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKA-G-----YRVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHT-T-----SEEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHC-C-----CcEEEEecCcc
Confidence            899999999999999999 8     99999999874

...

>PRK10537 voltage-gated potassium channel; Provisional

Probab=93.78  E-value=0.47  Score=47.47  Aligned_cols=33  Identities=9%  Similarity=-0.016  Sum_probs=28.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      ...|.|+|.|.+|..++..|.+. |     ++|++++.+
T Consensus       240 k~HvII~G~g~lg~~v~~~L~~~-g-----~~vvVId~d  272 (393)
T PRK10537        240 KDHFIICGHSPLAINTYLGLRQR-G-----QAVTVIVPL  272 (393)
T ss_pred             CCeEEEECCChHHHHHHHHHHHC-C-----CCEEEEECc
Confidence            35799999999999999999887 7     888888865

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=93.73  E-value=0.1  Score=49.35  Aligned_cols=31  Identities=26%  Similarity=0.303  Sum_probs=29.5

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      .|+|||+|..|.+.|..|++. |     ++|++++++
T Consensus         1 DvvIIGaGi~G~~~A~~La~~-G-----~~V~l~e~~   31 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARR-G-----HSVTLLERG   31 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHT-T-----SEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeec
Confidence            489999999999999999999 8     999999998

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=93.66  E-value=0.73  Score=44.29  Aligned_cols=93  Identities=16%  Similarity=0.185  Sum_probs=62.8

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc-hhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~-~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      ...||.|.|. |.+|..+...|.+. |     ++ .+|-.++.. .++                          +     
T Consensus         7 ~~~~~~v~~~~~~~g~~~l~~l~~~-g-----~~-~v~pVnp~~~~~~--------------------------v-----   48 (291)
T PRK05678          7 KDTKVIVQGITGKQGTFHTEQMLAY-G-----TN-IVGGVTPGKGGTT--------------------------V-----   48 (291)
T ss_pred             CCCeEEEeCCCchHHHHHHHHHHHC-C-----CC-EEEEECCCCCCCe--------------------------E-----
Confidence            3469999996 99999999999876 6     55 555444421 110                          0     


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEee
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA  197 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~--aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~  197 (333)
                                                ..+.+..++++.-+.  .|+.+++||...+.+++++.... .    -..++.++
T Consensus        49 --------------------------~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v~~~l~e~~~~-g----vk~avI~s   97 (291)
T PRK05678         49 --------------------------LGLPVFNTVAEAVEATGANASVIYVPPPFAADAILEAIDA-G----IDLIVCIT   97 (291)
T ss_pred             --------------------------eCeeccCCHHHHhhccCCCEEEEEcCHHHHHHHHHHHHHC-C----CCEEEEEC
Confidence                                      023444556665444  89999999999999999997752 1    23556678


Q ss_pred             ecCccc
Q 019978          198 KGVEAE  203 (333)
Q Consensus       198 kGi~~~  203 (333)
                      .|+..+
T Consensus        98 ~Gf~~~  103 (291)
T PRK05678         98 EGIPVL  103 (291)
T ss_pred             CCCCHH
Confidence            888643

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=93.63  E-value=0.85  Score=43.50  Aligned_cols=41  Identities=17%  Similarity=0.143  Sum_probs=32.9

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ..-||+|+|+|.+|.+.|..+..+ | +.  .++.++|-++++++
T Consensus        19 ~~~KItVVG~G~VGmAca~siL~k-~-La--del~lvDv~~dklk   59 (332)
T KOG1495|consen   19 KHNKITVVGVGQVGMACAISILLK-G-LA--DELVLVDVNEDKLK   59 (332)
T ss_pred             cCceEEEEccchHHHHHHHHHHHh-h-hh--hceEEEecCcchhh
Confidence            346999999999999999997666 5 11  47899999988654

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=93.63  E-value=0.54  Score=46.08  Aligned_cols=36  Identities=19%  Similarity=0.285  Sum_probs=27.8

Q ss_pred             CceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ++||+|+| .|.+|..+...|.+. .    ..+++.+.+++.
T Consensus         3 ~~~V~I~GatG~iG~~l~~~L~~~-p----~~el~~~~~s~~   39 (349)
T PRK08664          3 KLKVGILGATGMVGQRFVQLLANH-P----WFEVTALAASER   39 (349)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHcC-C----CceEEEEEcChh
Confidence            47999999 699999999999876 3    147777755543

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=93.61  E-value=0.58  Score=43.53  Aligned_cols=33  Identities=24%  Similarity=0.316  Sum_probs=29.1

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ||.|+|+|..|+.++..|+.. |.    -+++++|.+.
T Consensus         1 kVlvvG~GGlG~eilk~La~~-Gv----g~i~ivD~D~   33 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALM-GF----GQIHVIDMDT   33 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence            689999999999999999998 82    4788888875

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK14982 acyl-ACP reductase; Provisional

Probab=93.53  E-value=0.22  Score=48.84  Aligned_cols=50  Identities=20%  Similarity=0.204  Sum_probs=35.2

Q ss_pred             HHHhhccCCCCCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           32 LRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        32 ~~~~~~~~~~~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      -..+++.. -..++|.|+|| |.||+.++..|+...|.    .++++++|+++.+.
T Consensus       145 a~~~lg~~-l~~k~VLVtGAtG~IGs~lar~L~~~~gv----~~lilv~R~~~rl~  195 (340)
T PRK14982        145 NAPRLGID-LSKATVAVVGATGDIGSAVCRWLDAKTGV----AELLLVARQQERLQ  195 (340)
T ss_pred             hHHHhccC-cCCCEEEEEccChHHHHHHHHHHHhhCCC----CEEEEEcCCHHHHH
Confidence            34445531 23379999999 89999999999754130    47999999876543

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=93.51  E-value=0.095  Score=51.96  Aligned_cols=34  Identities=18%  Similarity=0.304  Sum_probs=31.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~   83 (333)
                      |||+|||+|.-|.++|..|++. |     + +|+++.+.++
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~-g-----~~~v~v~Er~~~   35 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKH-S-----HLNVQLFEAAPA   35 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-C-----CCCEEEEecCCc
Confidence            6899999999999999999998 7     5 8999999875

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=93.50  E-value=0.36  Score=46.83  Aligned_cols=40  Identities=20%  Similarity=0.280  Sum_probs=29.0

Q ss_pred             HHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       156 ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                      +.+.++|++|+|+|...-.++...+..   .   ++.||.++.-+-
T Consensus        45 ~~~~~~D~vFlalp~~~s~~~~~~~~~---~---g~~VIDlSadfR   84 (310)
T TIGR01851        45 KLLNAADVAILCLPDDAAREAVSLVDN---P---NTCIIDASTAYR   84 (310)
T ss_pred             HhhcCCCEEEECCCHHHHHHHHHHHHh---C---CCEEEECChHHh
Confidence            445689999999999987777776542   2   567887765443

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=93.47  E-value=0.19  Score=47.71  Aligned_cols=64  Identities=19%  Similarity=0.194  Sum_probs=43.8

Q ss_pred             cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +|-++-.|-.-.==+.+++. .+...  ..++.|+|+|-.+.+++..|++. |.    .+|++++|+.++++
T Consensus        97 ~g~l~G~NTD~~Gf~~~L~~-~~~~~--~~~vlilGaGGaarAi~~aL~~~-g~----~~i~i~nR~~~~a~  160 (272)
T PRK12550         97 DGHLKAYNTDYIAIAKLLAS-YQVPP--DLVVALRGSGGMAKAVAAALRDA-GF----TDGTIVARNEKTGK  160 (272)
T ss_pred             CCEEEEEecCHHHHHHHHHh-cCCCC--CCeEEEECCcHHHHHHHHHHHHC-CC----CEEEEEeCCHHHHH
Confidence            34444445444444445543 23322  24899999999999999999987 71    36999999987654

>PRK06392 homoserine dehydrogenase; Provisional

Probab=93.46  E-value=0.34  Score=47.28  Aligned_cols=41  Identities=10%  Similarity=0.085  Sum_probs=28.3

Q ss_pred             cCCCEEEEecCchh-HHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          159 WDADIVINGLPSTE-TKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       159 ~~aDlIIlaVps~~-~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                      .++|++|.|+|+.. -......+.+.+..   +..||+..||.-.
T Consensus        80 ~~~DVvVE~t~~~~~g~~~~~~~~~aL~~---G~hVVTaNKgalA  121 (326)
T PRK06392         80 IKPDVIVDVTPASKDGIREKNLYINAFEH---GIDVVTANKSGLA  121 (326)
T ss_pred             CCCCEEEECCCCCCcCchHHHHHHHHHHC---CCEEEcCCHHHHH
Confidence            36899999998532 12235556666766   7789998888654

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.36  E-value=0.25  Score=47.37  Aligned_cols=29  Identities=21%  Similarity=0.358  Sum_probs=24.8

Q ss_pred             ceEEEECCCHH-HHHHHHHHHHhcCCCCCCeeEEEE
Q 019978           44 LRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIW   78 (333)
Q Consensus        44 ~kI~IIGaG~m-G~alA~~La~~~G~~~~~~~V~l~   78 (333)
                      ++|+|||.|.. |..+|..|.+. |     ..|+++
T Consensus       159 k~vvViGrs~iVGkPla~lL~~~-~-----atVt~~  188 (285)
T PRK14189        159 AHAVVIGRSNIVGKPMAMLLLQA-G-----ATVTIC  188 (285)
T ss_pred             CEEEEECCCCccHHHHHHHHHHC-C-----CEEEEe
Confidence            68999998777 99999999887 6     778775

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=93.32  E-value=0.14  Score=48.52  Aligned_cols=42  Identities=14%  Similarity=0.162  Sum_probs=37.3

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhh
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT   89 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~   89 (333)
                      .++++.|-|| +-+|..+|..||++ |     ++|.++.|++++++++.
T Consensus         5 ~~~~~lITGASsGIG~~~A~~lA~~-g-----~~liLvaR~~~kL~~la   47 (265)
T COG0300           5 KGKTALITGASSGIGAELAKQLARR-G-----YNLILVARREDKLEALA   47 (265)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEeCcHHHHHHHH
Confidence            3468999997 99999999999999 8     99999999999887654

>PRK07411 hypothetical protein; Validated

Probab=93.30  E-value=0.59  Score=46.63  Aligned_cols=34  Identities=24%  Similarity=0.261  Sum_probs=30.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||.|||+|.+|+.++..|+.. |.    -+++++|.+.
T Consensus        39 ~~VlivG~GGlG~~va~~La~~-Gv----g~l~lvD~D~   72 (390)
T PRK07411         39 ASVLCIGTGGLGSPLLLYLAAA-GI----GRIGIVDFDV   72 (390)
T ss_pred             CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEECCCE
Confidence            6999999999999999999999 82    4788888875

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=93.23  E-value=0.77  Score=45.81  Aligned_cols=34  Identities=26%  Similarity=0.272  Sum_probs=30.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||.|||+|.+|+.+|..|+.. |.    .+++++|.+.
T Consensus        43 ~~VlviG~GGlGs~va~~La~~-Gv----g~i~lvD~D~   76 (392)
T PRK07878         43 ARVLVIGAGGLGSPTLLYLAAA-GV----GTLGIVEFDV   76 (392)
T ss_pred             CCEEEECCCHHHHHHHHHHHHc-CC----CeEEEECCCE
Confidence            6999999999999999999998 82    4788988875

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=93.22  E-value=0.11  Score=51.37  Aligned_cols=33  Identities=27%  Similarity=0.409  Sum_probs=31.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      .+.|+|||+|..|.++|..|++. |     ++|+++.+.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~-G-----~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARA-G-----LDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEccC
Confidence            46899999999999999999999 8     999999998

>PRK06475 salicylate hydroxylase; Provisional

Probab=93.18  E-value=0.11  Score=51.29  Aligned_cols=34  Identities=21%  Similarity=0.148  Sum_probs=31.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .||+|||+|.-|.++|..|++. |     ++|+++.+.++
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~-G-----~~V~i~E~~~~   36 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAAR-G-----WAVTIIEKAQE   36 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence            5899999999999999999999 8     99999999875

>PRK06185 hypothetical protein; Provisional

Probab=93.15  E-value=0.13  Score=50.69  Aligned_cols=36  Identities=19%  Similarity=0.342  Sum_probs=32.2

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ....|.|||+|..|.++|..|++. |     ++|+++++.+.
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~-G-----~~v~liE~~~~   40 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARA-G-----VDVTVLEKHAD   40 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence            346899999999999999999998 8     99999998753

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=93.13  E-value=0.12  Score=50.13  Aligned_cols=32  Identities=22%  Similarity=0.243  Sum_probs=29.9

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .|+|||+|.+|.++|..|++. |     ++|+++++..
T Consensus         5 dv~IIGgGi~G~s~A~~L~~~-g-----~~V~lie~~~   36 (376)
T PRK11259          5 DVIVIGLGSMGSAAGYYLARR-G-----LRVLGLDRFM   36 (376)
T ss_pred             cEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccc
Confidence            599999999999999999999 8     9999999875

>PRK08223 hypothetical protein; Validated

Probab=93.03  E-value=0.63  Score=44.64  Aligned_cols=34  Identities=21%  Similarity=0.137  Sum_probs=30.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||.|||+|.+|+.++..|+.. |.    .+++++|.+.
T Consensus        28 s~VlIvG~GGLGs~va~~LA~a-GV----G~i~lvD~D~   61 (287)
T PRK08223         28 SRVAIAGLGGVGGIHLLTLARL-GI----GKFTIADFDV   61 (287)
T ss_pred             CCEEEECCCHHHHHHHHHHHHh-CC----CeEEEEeCCC
Confidence            6999999999999999999999 83    4788888875

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=93.02  E-value=0.19  Score=38.94  Aligned_cols=33  Identities=27%  Similarity=0.397  Sum_probs=29.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR   80 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r   80 (333)
                      .++++|+|+|.+|..++..+... +    +.+|.+|+|
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~-~----~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADE-G----GKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-C----CCEEEEEcC
Confidence            47999999999999999999887 4    268999998

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=92.93  E-value=0.5  Score=46.94  Aligned_cols=39  Identities=23%  Similarity=0.224  Sum_probs=28.8

Q ss_pred             HhcCCCEEEEecCchhHHHHHHHHHhhhhccCCC--CEEEEeeecCc
Q 019978          157 AVWDADIVINGLPSTETKEVFEEISRYWKERITV--PVIISLAKGVE  201 (333)
Q Consensus       157 a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~--~~Ivs~~kGi~  201 (333)
                      .+.++|++|+|+|+..-.++..++..   .   +  ++||..+.-+-
T Consensus        62 ~~~~~Divf~a~~~~~s~~~~~~~~~---a---G~~~~VID~Ss~fR  102 (369)
T PRK06598         62 ALKKLDIIITCQGGDYTNEVYPKLRA---A---GWQGYWIDAASTLR  102 (369)
T ss_pred             HhcCCCEEEECCCHHHHHHHHHHHHh---C---CCCeEEEECChHHh
Confidence            35789999999999988888777654   2   4  45777765544

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=92.92  E-value=0.12  Score=50.59  Aligned_cols=34  Identities=18%  Similarity=0.248  Sum_probs=30.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      +.+|.|||+|..|.++|..|++. |     ++|+++++.+
T Consensus         1 ~~dV~IvGgG~~Gl~~A~~L~~~-G-----~~v~l~E~~~   34 (374)
T PRK06617          1 MSNTVILGCGLSGMLTALSFAQK-G-----IKTTIFESKS   34 (374)
T ss_pred             CccEEEECCCHHHHHHHHHHHcC-C-----CeEEEecCCC
Confidence            35899999999999999999999 8     9999999863

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=92.91  E-value=0.14  Score=50.03  Aligned_cols=34  Identities=18%  Similarity=0.213  Sum_probs=31.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .+|.|||+|..|.++|..|++. |     ++|+++++.+.
T Consensus         8 ~dViIVGaG~~Gl~~A~~L~~~-G-----~~v~liE~~~~   41 (388)
T PRK07494          8 TDIAVIGGGPAGLAAAIALARA-G-----ASVALVAPEPP   41 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHhcC-C-----CeEEEEeCCCC
Confidence            5799999999999999999998 8     99999999764

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.89  E-value=0.29  Score=49.09  Aligned_cols=34  Identities=21%  Similarity=0.315  Sum_probs=31.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .++|.|+|+|..|.++|..|++. |     ++|++++++.
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~-G-----~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKL-G-----AKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCc
Confidence            37999999999999999999999 8     9999999975

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=92.87  E-value=0.14  Score=50.49  Aligned_cols=34  Identities=26%  Similarity=0.446  Sum_probs=31.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .+|.|||+|..|.++|..|++. |     ++|+++++.++
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~viE~~~~   36 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKA-G-----IDNVILERQSR   36 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHC-C-----CCEEEEECCCC
Confidence            5899999999999999999999 8     99999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=92.87  E-value=0.17  Score=49.14  Aligned_cols=34  Identities=18%  Similarity=0.280  Sum_probs=31.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .++|+|||+|.+|.+.|..|++. |     ++|+++++.+
T Consensus         4 ~~~vvVIGgGi~Gls~A~~La~~-G-----~~V~vie~~~   37 (387)
T COG0665           4 KMDVVIIGGGIVGLSAAYYLAER-G-----ADVTVLEAGE   37 (387)
T ss_pred             cceEEEECCcHHHHHHHHHHHHc-C-----CEEEEEecCc
Confidence            47999999999999999999999 8     8999998766

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.82  E-value=0.33  Score=48.49  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=31.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      ++|.|||.|.+|.++|..|.+. |     ++|+++|++++.
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~-G-----~~V~g~D~~~~~   38 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQK-G-----VYVIGVDKSLEA   38 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHC-C-----CEEEEEeCCccc
Confidence            5899999999999999999988 8     899999987653

>PRK07045 putative monooxygenase; Reviewed

Probab=92.76  E-value=0.16  Score=49.72  Aligned_cols=37  Identities=22%  Similarity=0.448  Sum_probs=33.3

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      ..++|.|||+|.-|.++|..|++. |     ++|+++.+.++.
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~-G-----~~v~v~E~~~~~   40 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGAR-G-----HSVTVVERAARN   40 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhc-C-----CcEEEEeCCCcc
Confidence            346899999999999999999999 8     999999988753

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=92.72  E-value=0.58  Score=44.65  Aligned_cols=107  Identities=12%  Similarity=0.168  Sum_probs=51.4

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .+.||++||+|.+-.+.-...... |.   +..|.-+|++++..+..+     +++++.              .++    
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~-~~---~~~v~~iD~d~~A~~~a~-----~lv~~~--------------~~L----  172 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQH-GP---GARVHNIDIDPEANELAR-----RLVASD--------------LGL----  172 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--H-TT-----EEEEEESSHHHHHHHH-----HHHH-----------------HH----
T ss_pred             ccceEEEEcCCCcchHHHHHHHHh-CC---CCeEEEEeCCHHHHHHHH-----HHHhhc--------------ccc----
Confidence            457999999999988766665443 30   146888999997544211     112210              011    


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEE-ecCH---HHHhcCCCEEEEecCch----hHHHHHHHHHhhhhccCCCCEE
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKV-VTNL---QEAVWDADIVINGLPST----ETKEVFEEISRYWKERITVPVI  193 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~-t~d~---~ea~~~aDlIIlaVps~----~~~~vl~~i~~~l~~~~~~~~I  193 (333)
                      ++                       ++.+ +.|.   ...+.++|+|++|--..    ...++++++.+++++   ++.|
T Consensus       173 ~~-----------------------~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~---ga~l  226 (276)
T PF03059_consen  173 SK-----------------------RMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAP---GARL  226 (276)
T ss_dssp             -S-----------------------SEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-T---TSEE
T ss_pred             cC-----------------------CeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCC---CcEE
Confidence            00                       1222 1222   12356889999988766    899999999999988   6655


Q ss_pred             EE-eeecCc
Q 019978          194 IS-LAKGVE  201 (333)
Q Consensus       194 vs-~~kGi~  201 (333)
                      +. ..+|+-
T Consensus       227 ~~Rsa~GlR  235 (276)
T PF03059_consen  227 VVRSAHGLR  235 (276)
T ss_dssp             EEEE--GGG
T ss_pred             EEecchhhH
Confidence            43 455554

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=92.72  E-value=0.27  Score=52.16  Aligned_cols=35  Identities=26%  Similarity=0.450  Sum_probs=31.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .+||+|||+|..|.+.|..|++. |     ++|+++++.+.
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~-G-----~~V~V~E~~~~  361 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARN-G-----VAVTVYDRHPE  361 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEecCCC
Confidence            47999999999999999999998 8     99999998753

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=92.70  E-value=0.14  Score=49.49  Aligned_cols=33  Identities=30%  Similarity=0.363  Sum_probs=30.6

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .|.|||+|.-|+++|..|++. |     ++|+++++.+.
T Consensus         1 dViIvGaG~aGl~~A~~L~~~-G-----~~v~v~Er~~~   33 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARS-G-----LKIALIEATPA   33 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcC-C-----CEEEEEeCCCc
Confidence            389999999999999999999 8     99999999874

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=92.69  E-value=0.15  Score=49.54  Aligned_cols=32  Identities=22%  Similarity=0.270  Sum_probs=29.3

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .|+|||+|.+|.+.|..|++. |     ++|+++++..
T Consensus         2 dvvIIGaGi~G~s~A~~La~~-g-----~~V~l~e~~~   33 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKH-G-----KKTLLLEQFD   33 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccC
Confidence            589999999999999999999 8     8999999853

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=92.68  E-value=0.47  Score=46.54  Aligned_cols=38  Identities=18%  Similarity=0.251  Sum_probs=30.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      -.+|+|+|+|-+|..-.+.+..- |     .+|+.++|++++.+
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~-g-----a~Via~~~~~~K~e  204 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAM-G-----AEVIAITRSEEKLE  204 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc-C-----CeEEEEeCChHHHH
Confidence            37999999998887666665545 7     89999999998764

>PRK08013 oxidoreductase; Provisional

Probab=92.67  E-value=0.15  Score=50.33  Aligned_cols=34  Identities=24%  Similarity=0.327  Sum_probs=31.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ..|.|||+|..|.++|..|++. |     ++|+++++.++
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~-G-----~~v~viE~~~~   37 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGS-G-----LRVAVLEQRVP   37 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhC-C-----CEEEEEeCCCC
Confidence            4799999999999999999999 8     99999999875

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=92.67  E-value=0.43  Score=49.36  Aligned_cols=38  Identities=18%  Similarity=0.377  Sum_probs=32.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ..|++|+|+|.+|...+..+..- |     ..|+++++++++.+
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~l-G-----A~V~v~d~~~~rle  201 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSL-G-----AIVRAFDTRPEVKE  201 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence            46999999999999999888777 7     78999999987543

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=92.59  E-value=1.4  Score=42.12  Aligned_cols=129  Identities=20%  Similarity=0.204  Sum_probs=74.8

Q ss_pred             ccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCCHH
Q 019978          136 FCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPT  214 (333)
Q Consensus       136 ~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~-~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~s  214 (333)
                      -|+|.++.+-.++++++|-.||++++|++|+.+|-.. ...+++++.+.+++   +++|.. +=.++..        .+.
T Consensus       117 ~~ihf~~pEdaGvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipE---gAII~~-tCTIpt~--------~ly  184 (342)
T PRK00961        117 GCIHFVHPEDLGLKVTTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKE---GAIVTH-ACTIPTT--------KFA  184 (342)
T ss_pred             cceeecCHHHcCceEecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCC---CCEEec-cccCCHH--------HHH
Confidence            3455555555688999888899999999999999876 68999999999987   665543 2223321        111


Q ss_pred             HHHHhHhCCCCCcEEEEc-CCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEE-ecCChhHH
Q 019978          215 QMINRATGVPIENILYLG-GPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW-DNGDLVTH  280 (333)
Q Consensus       215 e~i~~~lg~~~~~~~vl~-GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~-~s~Di~gv  280 (333)
                      ..+++ +++..  +.+.+ -|.-. ....|+.....--.+++..+++.++-.+.+-..| .-.|+++.
T Consensus       185 ~~le~-l~R~D--vgIsS~HPaaV-Pgt~Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA~lvsp  248 (342)
T PRK00961        185 KIFKD-LGRDD--LNVTSYHPGAV-PEMKGQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPANLIGP  248 (342)
T ss_pred             HHHHH-hCccc--CCeeccCCCCC-CCCCCceecccccCCHHHHHHHHHHHHHhCCCeeecchhhcch
Confidence            22332 44321  22221 22211 0111222211123456788888888877654444 45677764

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=92.58  E-value=0.16  Score=49.88  Aligned_cols=33  Identities=18%  Similarity=0.220  Sum_probs=30.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .+|.|||+|..|.++|..|++. |     ++|+++++.+
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~-G-----~~v~l~E~~~   36 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQ-G-----RSVAVIEGGE   36 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhC-C-----CcEEEEcCCC
Confidence            4899999999999999999999 8     9999999764

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=92.46  E-value=0.17  Score=47.73  Aligned_cols=35  Identities=29%  Similarity=0.533  Sum_probs=31.6

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      |+|.|.|+ |.+|..++..|++. |     ++|++++|+++.
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~-g-----~~V~~~~r~~~~   36 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQ-G-----EEVRVLVRPTSD   36 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHC-C-----CEEEEEEecCcc
Confidence            58999996 99999999999999 8     899999998754

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.43  E-value=0.37  Score=46.08  Aligned_cols=31  Identities=26%  Similarity=0.337  Sum_probs=28.1

Q ss_pred             ceEEEECCCH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 019978           44 LRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR   80 (333)
Q Consensus        44 ~kI~IIGaG~-mG~alA~~La~~~G~~~~~~~V~l~~r   80 (333)
                      ++|+|+|+|. .|.+++..|.+. |     ..|+++.|
T Consensus       160 k~vvViG~gg~vGkpia~~L~~~-g-----atVtv~~~  191 (283)
T PRK14192        160 KHAVVVGRSAILGKPMAMMLLNA-N-----ATVTICHS  191 (283)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhC-C-----CEEEEEeC
Confidence            6999999997 999999999988 7     78988876

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=92.41  E-value=0.2  Score=51.07  Aligned_cols=36  Identities=25%  Similarity=0.380  Sum_probs=32.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      .++|+|||||.-|.+.|..|.+. |     ++|+++.++.+.
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~-G-----~~v~vfE~~~~v   45 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRRE-G-----HTVVVFEREKQV   45 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhc-C-----CeEEEEecCCCC
Confidence            47999999999999999999999 8     899999987643

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=92.37  E-value=0.31  Score=51.60  Aligned_cols=55  Identities=24%  Similarity=0.375  Sum_probs=40.7

Q ss_pred             cchHHhhhHHHHhhccCC------CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           23 GSLEERLDELRRLMGKAE------GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~------~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ++|||-....-.-.++..      ...+||+|||+|..|.+.|..|++. |     ++|++|++.+.
T Consensus       284 ~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~-G-----~~Vtv~e~~~~  344 (639)
T PRK12809        284 GNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARA-G-----VQVDVFDRHPE  344 (639)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHc-C-----CcEEEEeCCCC
Confidence            456665554443333321      1247999999999999999999998 8     99999998874

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=92.31  E-value=0.31  Score=46.58  Aligned_cols=66  Identities=15%  Similarity=0.141  Sum_probs=45.8

Q ss_pred             cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +|-++-.|-.-.==+..+++..  .....+++.|+|+|-.|.+++..|++. |.    .++++++|+.+++++
T Consensus       101 ~g~l~G~NTD~~Gf~~~L~~~~--~~~~~k~vlilGaGGaarAi~~aL~~~-g~----~~i~i~nR~~~ka~~  166 (283)
T PRK14027        101 TGHTTGHNTDVSGFGRGMEEGL--PNAKLDSVVQVGAGGVGNAVAYALVTH-GV----QKLQVADLDTSRAQA  166 (283)
T ss_pred             CCcEEEEcCCHHHHHHHHHhcC--cCcCCCeEEEECCcHHHHHHHHHHHHC-CC----CEEEEEcCCHHHHHH
Confidence            5555555655444444554311  112246899999999999999999987 72    479999999876654

>TIGR02028 ChlP geranylgeranyl reductase

Probab=92.29  E-value=0.18  Score=50.03  Aligned_cols=34  Identities=26%  Similarity=0.405  Sum_probs=31.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ++|.|||+|.-|++.|..|++. |     ++|.++++...
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~-G-----~~V~llE~~~~   34 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASA-G-----IQTFLLERKPD   34 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence            5899999999999999999999 8     99999998754

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=92.29  E-value=0.2  Score=46.07  Aligned_cols=37  Identities=19%  Similarity=0.197  Sum_probs=32.9

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      ++|+|.|+|+ |.+|..++..|.++ |     ++|+...|+++.
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~-g-----~~V~~~~R~~~~   53 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAK-G-----FAVKAGVRDVDK   53 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhC-C-----CEEEEEecCHHH
Confidence            3589999996 99999999999998 8     999999998764

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=92.18  E-value=0.18  Score=49.25  Aligned_cols=34  Identities=24%  Similarity=0.402  Sum_probs=31.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ...|.|||+|..|+++|..|++. |     ++|+++++.+
T Consensus         5 ~~dViIvGgG~aGl~~A~~La~~-G-----~~V~liE~~~   38 (391)
T PRK08020          5 PTDIAIVGGGMVGAALALGLAQH-G-----FSVAVLEHAA   38 (391)
T ss_pred             cccEEEECcCHHHHHHHHHHhcC-C-----CEEEEEcCCC
Confidence            36899999999999999999999 8     9999999875

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=92.12  E-value=0.24  Score=46.98  Aligned_cols=54  Identities=24%  Similarity=0.255  Sum_probs=42.3

Q ss_pred             HHhhhHHHHhhccCCC---CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           26 EERLDELRRLMGKAEG---DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        26 ~~~~~~~~~~~~~~~~---~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      .+|.+...+|+|...-   ...+|.|+|+|.+|+..|..|++. |.    .+++++|.+.-.
T Consensus        10 ~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~-GV----g~itLiD~D~V~   66 (268)
T PRK15116         10 RQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALART-GI----GAITLIDMDDVC   66 (268)
T ss_pred             HHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHc-CC----CEEEEEeCCEec
Confidence            4677777788874332   236899999999999999999999 83    479999987543

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=92.03  E-value=0.27  Score=52.09  Aligned_cols=52  Identities=25%  Similarity=0.398  Sum_probs=38.2

Q ss_pred             chHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      ....|.+.+..+.+........|.|||+|..|.++|..|+.. |     .+|.+++++
T Consensus        52 ~~~~r~~~~~~~~~~~~~~~~DVvVIGGGi~Ga~~A~~lA~r-G-----l~V~LvE~~  103 (627)
T PLN02464         52 SVPSRSAQESALIGATAAEPLDVLVVGGGATGAGVALDAATR-G-----LRVGLVERE  103 (627)
T ss_pred             CCcChHHHHHHhhccccCCccCEEEECCCHHHHHHHHHHHhC-C-----CEEEEEecc
Confidence            334444444444322223446899999999999999999999 8     899999986

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=92.00  E-value=0.21  Score=49.12  Aligned_cols=34  Identities=24%  Similarity=0.393  Sum_probs=31.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .+|.|||+|.-|.++|..|++. |     ++|+++++.+.
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~-G-----~~v~v~E~~~~   36 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLA-G-----IDSVVLERRSR   36 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhc-C-----CCEEEEEcCCc
Confidence            5899999999999999999999 8     99999999874

>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO

Probab=91.94  E-value=0.57  Score=41.05  Aligned_cols=102  Identities=24%  Similarity=0.344  Sum_probs=51.9

Q ss_pred             hHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHH
Q 019978           25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVL  104 (333)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~  104 (333)
                      +++..++++.+.......-.+|++.|||+=|.++...+--. .    ..=..++|.++.+                    
T Consensus        50 ~~~~~~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~-~----~~I~~vvD~np~K--------------------  104 (160)
T PF08484_consen   50 VEQSKAELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLD-N----DLIDYVVDDNPLK--------------------  104 (160)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT---T----TTS--EEES-GGG--------------------
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCC-c----ceeEEEEeCChhh--------------------
Confidence            33344444444433333447899999999999998887543 2    0224577887643                    


Q ss_pred             HHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhh
Q 019978          105 RRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYW  184 (333)
Q Consensus       105 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l  184 (333)
                           .++|.|+..       +                    +|.....+.  -...|+||+ .+..+.+++.+++..+.
T Consensus       105 -----~G~~~PGt~-------i--------------------pI~~p~~l~--~~~pd~viv-law~y~~EI~~~~~~~~  149 (160)
T PF08484_consen  105 -----QGKYLPGTH-------I--------------------PIVSPEELK--ERKPDYVIV-LAWNYKDEIIEKLREYL  149 (160)
T ss_dssp             -----TTEE-TTT-----------------------------EEEEGGG----SS--SEEEE-S-GGGHHHHHHHTHHHH
T ss_pred             -----cCcccCCCC-------C--------------------eECCHHHHh--hCCCCEEEE-cChhhHHHHHHHHHHHH
Confidence                 124666521       1                    232222222  235788777 67889999999999888


Q ss_pred             hc
Q 019978          185 KE  186 (333)
Q Consensus       185 ~~  186 (333)
                      ..
T Consensus       150 ~~  151 (160)
T PF08484_consen  150 ER  151 (160)
T ss_dssp             HT
T ss_pred             hc
Confidence            76

; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=91.88  E-value=0.19  Score=53.34  Aligned_cols=33  Identities=15%  Similarity=0.274  Sum_probs=30.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ++|+|||+|.+|.+.|..|++. |     ++|++++++.
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~-G-----~~V~VlE~~~  293 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARR-G-----WQVTLYEADE  293 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence            5899999999999999999999 8     8999999874

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=91.87  E-value=0.41  Score=48.74  Aligned_cols=35  Identities=26%  Similarity=0.437  Sum_probs=31.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .++|+|||+|..|...|..|++. |     ++|++|++.+.
T Consensus       141 ~~~V~IIG~GpaGl~aA~~l~~~-G-----~~V~i~e~~~~  175 (467)
T TIGR01318       141 GKRVAVIGAGPAGLACADILARA-G-----VQVVVFDRHPE  175 (467)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc-C-----CeEEEEecCCC
Confidence            36899999999999999999998 8     99999988763

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=91.79  E-value=0.23  Score=50.30  Aligned_cols=34  Identities=24%  Similarity=0.248  Sum_probs=30.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      +++|.|||+|..|+..|..|++. |     ++|++++..+
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~-G-----l~V~LiE~rp   35 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKR-G-----VPVELYEMRP   35 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC-C-----CcEEEEEccC
Confidence            36899999999999999999999 8     9999998644

>PLN02985 squalene monooxygenase

Probab=91.79  E-value=0.28  Score=50.72  Aligned_cols=35  Identities=29%  Similarity=0.392  Sum_probs=31.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ..+|.|||+|..|.++|..|++. |     ++|++++++..
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~-G-----~~V~vlEr~~~   77 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKD-G-----RRVHVIERDLR   77 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHc-C-----CeEEEEECcCC
Confidence            45899999999999999999999 8     99999999753

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.79  E-value=0.4  Score=48.60  Aligned_cols=34  Identities=15%  Similarity=0.260  Sum_probs=31.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +||.|+|.|.-|.++|..|.+. |     ++|+++|+++.
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~-G-----~~V~~~D~~~~   48 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKL-G-----AKVTAFDKKSE   48 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHC-C-----CEEEEECCCCC
Confidence            5899999999999999999999 8     99999998763

>PRK06126 hypothetical protein; Provisional

Probab=91.78  E-value=0.25  Score=50.97  Aligned_cols=35  Identities=23%  Similarity=0.227  Sum_probs=32.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ..+|+|||+|..|.++|..|++. |     ++|+++++.+.
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~-G-----~~v~viEr~~~   41 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRR-G-----VDSILVERKDG   41 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence            36899999999999999999999 8     99999998865

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=91.76  E-value=0.4  Score=48.74  Aligned_cols=35  Identities=23%  Similarity=0.399  Sum_probs=31.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .++|+|||+|..|.+.|..|++. |     ++|+++++.+.
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~-G-----~~V~vie~~~~  177 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARA-G-----HKVTVFERADR  177 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence            47999999999999999999998 8     99999998764

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=91.75  E-value=0.25  Score=51.05  Aligned_cols=35  Identities=26%  Similarity=0.325  Sum_probs=32.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ..+|.|||+|..|.++|..|++. |     ++|+++++.++
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~-G-----~~v~viE~~~~   57 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQ-G-----VPVVLLDDDDT   57 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEeCCCC
Confidence            35899999999999999999998 8     99999998874

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=91.75  E-value=0.25  Score=51.35  Aligned_cols=35  Identities=20%  Similarity=0.347  Sum_probs=29.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      +||+|||||.-|.+.++.|.+. |     ++|+++.++++.
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~-g-----~~~~~fE~~~~i   36 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEE-G-----LEVTCFEKSDDI   36 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHT-T------EEEEEESSSSS
T ss_pred             CEEEEECccHHHHHHHHHHHHC-C-----CCCeEEecCCCC
Confidence            6999999999999999999998 8     999999998864

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=91.74  E-value=0.23  Score=48.13  Aligned_cols=32  Identities=22%  Similarity=0.369  Sum_probs=29.5

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .|+|||+|.+|.+.|..|++. |     ++|+++++..
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~-G-----~~V~vle~~~   33 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARR-G-----LSVTVIERSS   33 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence            589999999999999999999 8     8999999865

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PTZ00367 squalene epoxidase; Provisional

Probab=91.70  E-value=0.29  Score=51.21  Aligned_cols=34  Identities=21%  Similarity=0.288  Sum_probs=31.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ..+|.|||+|..|.++|..|++. |     ++|.++.|++
T Consensus        33 ~~dViIVGaGiaGlalA~aLar~-G-----~~V~VlEr~~   66 (567)
T PTZ00367         33 DYDVIIVGGSIAGPVLAKALSKQ-G-----RKVLMLERDL   66 (567)
T ss_pred             CccEEEECCCHHHHHHHHHHHhc-C-----CEEEEEcccc
Confidence            36899999999999999999999 8     9999999976

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=91.62  E-value=0.76  Score=39.36  Aligned_cols=36  Identities=33%  Similarity=0.510  Sum_probs=25.4

Q ss_pred             CHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEe
Q 019978          153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL  196 (333)
Q Consensus       153 d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~  196 (333)
                      +++++++.||+|+.++....+   ++  ..++++   +++++.+
T Consensus        64 ~l~~~v~~ADIVvsAtg~~~~---i~--~~~ikp---Ga~Vidv   99 (140)
T cd05212          64 QLQSKVHDADVVVVGSPKPEK---VP--TEWIKP---GATVINC   99 (140)
T ss_pred             CHHHHHhhCCEEEEecCCCCc---cC--HHHcCC---CCEEEEc
Confidence            566778999999999987643   22  245666   7777754

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase

Probab=91.61  E-value=2.3  Score=40.76  Aligned_cols=127  Identities=17%  Similarity=0.186  Sum_probs=74.2

Q ss_pred             cccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCCHHH
Q 019978          137 CLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQ  215 (333)
Q Consensus       137 ~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~-~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se  215 (333)
                      ++|.++.+-.++++++|-.||++++|++|+.+|-.. ...+++++.+.+++   +++|.. +=.++..        .+..
T Consensus       116 ~ihf~~pEdaGvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpE---gAII~~-tCTIpt~--------~ly~  183 (340)
T TIGR01723       116 AIHFVHPEDLGLKVTTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPE---GAIVTH-ACTIPTT--------KFAK  183 (340)
T ss_pred             eeeecCHHHcCceEecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCC---CCEEec-cccCChH--------HHHH
Confidence            455555555688999888899999999999999876 68999999999987   665543 2222221        1112


Q ss_pred             HHHhHhCCCCCcEEEE-cCCCchHHHhccCceeEE-EeCChhhHHHHHHHhCCCCeEEE-ecCChhHH
Q 019978          216 MINRATGVPIENILYL-GGPNIASEIYNKEYANAR-ICGAEKWRKPLAKFLRRPHFTVW-DNGDLVTH  280 (333)
Q Consensus       216 ~i~~~lg~~~~~~~vl-~GP~~a~ev~~~~~~~~~-~~~~~~~~~~l~~ll~~~~~~v~-~s~Di~gv  280 (333)
                      .++. +++.  .+.+. .-|.-.-+ ..+ ..++. --.+++..+++.++-.+.+-..| .-.|+++.
T Consensus       184 ilE~-l~R~--DvgVsS~HPaaVPg-t~~-q~Yi~egyAtEEqI~klveL~~sa~k~ay~~PA~Lvsp  246 (340)
T TIGR01723       184 IFED-LGRE--DLNVTSYHPGCVPE-MKG-QVYIAEGYASEEAVNKLYELGKKARGKAFKMPANLLGP  246 (340)
T ss_pred             HHHh-hCcc--cCCeeccCCCCCCC-CCC-ceEeecccCCHHHHHHHHHHHHHhCCCeeecchhhccc
Confidence            2222 4432  12222 22322111 111 11211 13456788888888887654444 45666663

This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=91.61  E-value=0.29  Score=49.68  Aligned_cols=35  Identities=23%  Similarity=0.339  Sum_probs=31.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .+.|.|||+|.-|++.|..|++. |     ++|.++++..+
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~~-G-----~~VlllEr~~~   73 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAKG-G-----IETFLIERKLD   73 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence            46899999999999999999999 8     99999998753

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=91.59  E-value=0.32  Score=47.27  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=32.6

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ..++|+|||+|..|...|..|++. |     ++|+++++.+.
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~~   52 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACL-G-----YEVHVYDKLPE   52 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence            457999999999999999999998 8     99999998765

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=91.54  E-value=0.71  Score=45.03  Aligned_cols=37  Identities=24%  Similarity=0.277  Sum_probs=34.1

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      ..++|.|-|| |.+|+.+...|..+ |     |.|+...|+++.
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~r-G-----Y~V~gtVR~~~~   42 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSR-G-----YTVRGTVRDPED   42 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhC-C-----CEEEEEEcCcch
Confidence            4589999997 99999999999999 9     999999999875

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=91.50  E-value=0.22  Score=49.16  Aligned_cols=32  Identities=22%  Similarity=0.383  Sum_probs=29.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      ..|+|||+|..|.++|..|++. |     ++|+++++.
T Consensus         5 ~dV~IvGaG~~Gl~~A~~L~~~-G-----~~v~viE~~   36 (405)
T PRK08850          5 VDVAIIGGGMVGLALAAALKES-D-----LRIAVIEGQ   36 (405)
T ss_pred             CCEEEECccHHHHHHHHHHHhC-C-----CEEEEEcCC
Confidence            4799999999999999999998 8     999999985

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=91.49  E-value=0.3  Score=51.90  Aligned_cols=36  Identities=19%  Similarity=0.244  Sum_probs=32.4

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ..+||+|||+|..|...|..|++. |     ++|+++++.+.
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~-G-----~~Vtv~e~~~~  227 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRK-G-----HDVTIFDANEQ  227 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence            347999999999999999999998 8     99999998764

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=91.48  E-value=0.26  Score=54.60  Aligned_cols=40  Identities=20%  Similarity=0.185  Sum_probs=34.5

Q ss_pred             ccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           37 GKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        37 ~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ++.....+||+|||+|.-|.+-|..|++. |     |+|+++++.+
T Consensus       300 ~~~~~~gkkVaVIGsGPAGLsaA~~Lar~-G-----~~VtVfE~~~  339 (944)
T PRK12779        300 PWAAAVKPPIAVVGSGPSGLINAYLLAVE-G-----FPVTVFEAFH  339 (944)
T ss_pred             ccccCCCCeEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeeCC
Confidence            44344468999999999999999999999 8     9999999875

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=91.43  E-value=0.21  Score=49.24  Aligned_cols=32  Identities=31%  Similarity=0.399  Sum_probs=30.1

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .|+|||+|..|.++|..|++. |     ++|+++++.+
T Consensus         4 dV~IVGaG~aGl~~A~~L~~~-G-----~~v~viE~~~   35 (405)
T PRK05714          4 DLLIVGAGMVGSALALALQGS-G-----LEVLLLDGGP   35 (405)
T ss_pred             cEEEECccHHHHHHHHHHhcC-C-----CEEEEEcCCC
Confidence            699999999999999999998 8     9999999875

>PRK07877 hypothetical protein; Provisional

Probab=91.42  E-value=0.67  Score=49.93  Aligned_cols=34  Identities=26%  Similarity=0.232  Sum_probs=28.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||+|+|+| +|+..|..|+.. |.+   -+++++|.+.
T Consensus       108 ~~V~IvG~G-lGs~~a~~Lara-Gvv---G~l~lvD~D~  141 (722)
T PRK07877        108 LRIGVVGLS-VGHAIAHTLAAE-GLC---GELRLADFDT  141 (722)
T ss_pred             CCEEEEEec-HHHHHHHHHHHc-cCC---CeEEEEcCCE
Confidence            699999999 999999999998 710   2688888775

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=91.37  E-value=0.92  Score=42.77  Aligned_cols=47  Identities=26%  Similarity=0.289  Sum_probs=35.4

Q ss_pred             cCHHHHhc--CCCEEEEec--CchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          152 TNLQEAVW--DADIVINGL--PSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       152 ~d~~ea~~--~aDlIIlaV--ps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                      .++.|+++  ++|++|=..  |--+.+++++.+..+.+    +++|..++|-.+.
T Consensus        96 ~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~----~PIIFaLSNPt~~  146 (254)
T cd00762          96 GDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINE----RPVIFALSNPTSK  146 (254)
T ss_pred             CCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCC----CCEEEECCCcCCc
Confidence            68999999  899877533  44589999999988754    4677778876553

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK09126 hypothetical protein; Provisional

Probab=91.36  E-value=0.25  Score=48.30  Aligned_cols=34  Identities=35%  Similarity=0.432  Sum_probs=31.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .+|.|||+|.-|.++|..|++. |     ++|+++++.+.
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~   37 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGS-G-----LKVTLIERQPL   37 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhC-C-----CcEEEEeCCCc
Confidence            4799999999999999999999 8     99999999764

>PRK00536 speE spermidine synthase; Provisional

Probab=91.36  E-value=1.5  Score=41.60  Aligned_cols=101  Identities=11%  Similarity=0.060  Sum_probs=60.3

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .+++||.|||+|--|+  ++-+.+. .     .+|++++.|++.++.. +                     .|+|.+.+.
T Consensus        71 ~~pk~VLIiGGGDGg~--~REvLkh-~-----~~v~mVeID~~Vv~~~-k---------------------~~lP~~~~~  120 (262)
T PRK00536         71 KELKEVLIVDGFDLEL--AHQLFKY-D-----THVDFVQADEKILDSF-I---------------------SFFPHFHEV  120 (262)
T ss_pred             CCCCeEEEEcCCchHH--HHHHHCc-C-----CeeEEEECCHHHHHHH-H---------------------HHCHHHHHh
Confidence            3467999999999554  3445454 2     4899999999765421 1                     245543321


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHH-hcCCCEEEEe-cCchhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVING-LPSTETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea-~~~aDlIIla-Vps~~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                      +.+                      ++++......+. -+..|+||+= +++   ++..+.+++.+++   +.+ +.++.
T Consensus       121 ~~D----------------------pRv~l~~~~~~~~~~~fDVIIvDs~~~---~~fy~~~~~~L~~---~Gi-~v~Qs  171 (262)
T PRK00536        121 KNN----------------------KNFTHAKQLLDLDIKKYDLIICLQEPD---IHKIDGLKRMLKE---DGV-FISVA  171 (262)
T ss_pred             hcC----------------------CCEEEeehhhhccCCcCCEEEEcCCCC---hHHHHHHHHhcCC---CcE-EEECC
Confidence            211                      245544444332 2578999986 444   5566777777877   554 44565


Q ss_pred             cC
Q 019978          199 GV  200 (333)
Q Consensus       199 Gi  200 (333)
                      |-
T Consensus       172 ~s  173 (262)
T PRK00536        172 KH  173 (262)
T ss_pred             CC
Confidence            53

>PRK08374 homoserine dehydrogenase; Provisional

Probab=91.33  E-value=1.3  Score=43.35  Aligned_cols=43  Identities=28%  Similarity=0.231  Sum_probs=29.3

Q ss_pred             CHHHHh--cCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          153 NLQEAV--WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       153 d~~ea~--~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                      ++++.+  .++|+||-++.+....++..+   .+..   +..||+.+||..
T Consensus        82 ~~~ell~~~~~DVvVd~t~~~~a~~~~~~---al~~---G~~VVtanK~~l  126 (336)
T PRK08374         82 SPEEIVEEIDADIVVDVTNDKNAHEWHLE---ALKE---GKSVVTSNKPPI  126 (336)
T ss_pred             CHHHHHhcCCCCEEEECCCcHHHHHHHHH---HHhh---CCcEEECCHHHH
Confidence            555655  378999999987655555444   3444   678888888743

>PLN02852 ferredoxin-NADP+ reductase

Probab=91.32  E-value=0.34  Score=49.87  Aligned_cols=38  Identities=26%  Similarity=0.380  Sum_probs=32.6

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHH--hcCCCCCCeeEEEEecCCcc
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQD--SYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~--~~G~~~~~~~V~l~~r~~~~   84 (333)
                      ...+||+|||+|.-|.+.|..|++  . |     ++|++|++.+.-
T Consensus        24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~-g-----~~Vtv~E~~p~p   63 (491)
T PLN02852         24 SEPLHVCVVGSGPAGFYTADKLLKAHD-G-----ARVDIIERLPTP   63 (491)
T ss_pred             CCCCcEEEECccHHHHHHHHHHHhhCC-C-----CeEEEEecCCCC
Confidence            345799999999999999999986  5 6     999999998743

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=91.32  E-value=0.27  Score=47.88  Aligned_cols=34  Identities=24%  Similarity=0.398  Sum_probs=31.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .+|.|||+|.-|.++|..|++. |     .+|+++++.+.
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~   39 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQS-G-----LRVALLAPRAP   39 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhC-C-----CeEEEEecCCC
Confidence            4799999999999999999998 8     89999998875

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=91.30  E-value=0.32  Score=44.38  Aligned_cols=37  Identities=16%  Similarity=0.258  Sum_probs=32.7

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      |+|.|.|+ |.+|.+++..|++. |     ++|.+.+|+++.++
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~~   38 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQ-G-----HKVIATGRRQERLQ   38 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence            68999996 99999999999998 8     89999999876543

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=91.17  E-value=0.32  Score=45.60  Aligned_cols=40  Identities=28%  Similarity=0.342  Sum_probs=30.6

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCC----C--CCCeeEEEEecCC
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGY----L--RDKVLIRIWRRPG   82 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~----~--~~~~~V~l~~r~~   82 (333)
                      +..||.|||+|..|+.++..|++. |.    +  ..+.+++++|.+.
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~-G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARL-HHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHc-cccccccCCCCCCEEEEECCCE
Confidence            457999999999999999999986 41    0  0013788888775

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=91.03  E-value=0.79  Score=43.93  Aligned_cols=45  Identities=16%  Similarity=0.335  Sum_probs=32.8

Q ss_pred             HhhccCCCCCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           34 RLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        34 ~~~~~~~~~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      +.+..-..+..||+|+|| |-+|..|+..|..+ -.+   -+..|||...
T Consensus        19 ~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~n-p~V---s~LaLYDi~~   64 (345)
T KOG1494|consen   19 RVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLN-PLV---SELALYDIAN   64 (345)
T ss_pred             ccccccccCcceEEEEecCCccCccHHHHHhcC-ccc---ceeeeeeccc
Confidence            334444556789999996 99999999999877 211   2567888764

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.00  E-value=0.92  Score=43.49  Aligned_cols=31  Identities=29%  Similarity=0.357  Sum_probs=25.7

Q ss_pred             ceEEEECCCH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 019978           44 LRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR   80 (333)
Q Consensus        44 ~kI~IIGaG~-mG~alA~~La~~~G~~~~~~~V~l~~r   80 (333)
                      ++|+|||-|. +|..+|..|.+. |     ..|+++.+
T Consensus       160 k~vvViGrs~iVG~Pla~lL~~~-~-----atVtv~hs  191 (285)
T PRK10792        160 LNAVVVGASNIVGRPMSLELLLA-G-----CTVTVCHR  191 (285)
T ss_pred             CEEEEECCCcccHHHHHHHHHHC-C-----CeEEEEEC
Confidence            6899999877 999999999877 6     77877743

>PRK05884 short chain dehydrogenase; Provisional

Probab=90.90  E-value=0.32  Score=43.97  Aligned_cols=37  Identities=8%  Similarity=0.239  Sum_probs=32.5

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ||+.|.|+ |.+|.+++..|++. |     ++|++.+|+++.++
T Consensus         1 m~vlItGas~giG~~ia~~l~~~-g-----~~v~~~~r~~~~~~   38 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRND-G-----HKVTLVGARRDDLE   38 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence            58999997 99999999999999 8     99999999876543

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=90.90  E-value=0.46  Score=49.33  Aligned_cols=74  Identities=16%  Similarity=0.184  Sum_probs=48.0

Q ss_pred             hhhhhhccCccccccccccchHHhhhHHHHhhcc--------CCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE
Q 019978            5 NEVVNDSLSSNGLIHHTNGSLEERLDELRRLMGK--------AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR   76 (333)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~   76 (333)
                      |-|+++.  .+|-++-.|-.-.-=+..+++..+.        .....+++.|+|+|.+|.+++..|++. |     .+|+
T Consensus       335 NTvv~~~--~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~-G-----~~V~  406 (529)
T PLN02520        335 NTIIRRP--SDGKLVGYNTDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEK-G-----ARVV  406 (529)
T ss_pred             eEEEEeC--CCCEEEEEcccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHC-C-----CEEE
Confidence            4455432  2555555565444444444432110        011236899999999999999999998 8     7899


Q ss_pred             EEecCCcchh
Q 019978           77 IWRRPGRSVD   86 (333)
Q Consensus        77 l~~r~~~~~~   86 (333)
                      +++|+.++++
T Consensus       407 i~nR~~e~a~  416 (529)
T PLN02520        407 IANRTYERAK  416 (529)
T ss_pred             EEcCCHHHHH
Confidence            9999876554

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=90.87  E-value=0.35  Score=48.90  Aligned_cols=36  Identities=19%  Similarity=0.297  Sum_probs=32.5

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ..++|+|||+|.-|.+.|..|++. |     ++|+++++.+.
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~-g-----~~V~lie~~~~  174 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARK-G-----YDVTIFEARDK  174 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEccCCC
Confidence            457999999999999999999998 8     99999998754

>PLN00016 RNA-binding protein; Provisional

Probab=90.84  E-value=0.27  Score=48.31  Aligned_cols=38  Identities=16%  Similarity=0.242  Sum_probs=33.4

Q ss_pred             CCCceEEEE----CC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           41 GDPLRIVGV----GA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        41 ~~~~kI~II----Ga-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      ..++||.|+    |+ |.+|+.++..|.++ |     |+|++.+|+++.
T Consensus        50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~-G-----~~V~~l~R~~~~   92 (378)
T PLN00016         50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKA-G-----HEVTLFTRGKEP   92 (378)
T ss_pred             cccceEEEEeccCCCceeEhHHHHHHHHHC-C-----CEEEEEecCCcc
Confidence            445799999    75 99999999999999 8     999999998754

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=90.81  E-value=0.36  Score=44.31  Aligned_cols=37  Identities=14%  Similarity=0.196  Sum_probs=32.7

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      |++.|.|+ |.+|.++|..|++. |     ++|.+.+|+++.++
T Consensus         1 m~vlItGas~gIG~aia~~l~~~-G-----~~V~~~~r~~~~~~   38 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKK-G-----ARVVISSRNEENLE   38 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence            68999996 88999999999999 8     89999999876543

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=90.77  E-value=0.36  Score=49.50  Aligned_cols=36  Identities=11%  Similarity=0.236  Sum_probs=32.2

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .....|.|||+|..|.++|..|++. |     .+|.++.+..
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~r-G-----~~V~LlEk~d   39 (502)
T PRK13369          4 PETYDLFVIGGGINGAGIARDAAGR-G-----LKVLLCEKDD   39 (502)
T ss_pred             CcccCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECCC
Confidence            3446899999999999999999999 8     8999999873

>PRK07454 short chain dehydrogenase; Provisional

Probab=90.74  E-value=0.45  Score=42.94  Aligned_cols=38  Identities=16%  Similarity=0.180  Sum_probs=33.1

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      .++++.|.|+ |.+|..++..|++. |     ++|++.+|+++..
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~   43 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKA-G-----WDLALVARSQDAL   43 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHH
Confidence            4568999996 99999999999999 8     8999999987644

>PRK08267 short chain dehydrogenase; Provisional

Probab=90.73  E-value=0.39  Score=43.94  Aligned_cols=38  Identities=13%  Similarity=0.136  Sum_probs=33.0

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      |+++.|.|+ |.+|.+++..|++. |     ++|.+++|+++..+
T Consensus         1 mk~vlItGasg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~~   39 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAAE-G-----WRVGAYDINEAGLA   39 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHC-C-----CeEEEEeCCHHHHH
Confidence            357999996 99999999999999 8     89999999886554

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=90.72  E-value=1.1  Score=46.31  Aligned_cols=39  Identities=18%  Similarity=0.381  Sum_probs=33.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      ..||+|+|+|.+|...+..+... |     .+|+.+|+++++.+.
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~l-G-----A~V~a~D~~~~rle~  203 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSL-G-----AIVRAFDTRPEVAEQ  203 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence            57999999999999888887766 8     789999999876543

>PRK07102 short chain dehydrogenase; Provisional

Probab=90.66  E-value=0.39  Score=43.47  Aligned_cols=38  Identities=13%  Similarity=0.159  Sum_probs=33.2

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      |++|.|.|+ |.+|.+++..|++. |     ++|++.+|+++..+
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~-G-----~~Vi~~~r~~~~~~   39 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAA-G-----ARLYLAARDVERLE   39 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhc-C-----CEEEEEeCCHHHHH
Confidence            468999995 99999999999999 8     89999999886543

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=90.66  E-value=0.31  Score=49.94  Aligned_cols=34  Identities=26%  Similarity=0.397  Sum_probs=31.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      |||+|+|+|--|.+-|..|++. |     ++|++|.++..
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~-g-----~~vt~~ea~~~   34 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADA-G-----YDVTLYEARDR   34 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhC-C-----CceEEEeccCc
Confidence            7999999999999999999999 8     99999988763

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=90.65  E-value=0.36  Score=44.53  Aligned_cols=33  Identities=27%  Similarity=0.377  Sum_probs=30.4

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .|.|||+|..|.++|..|++. |     .+|.++++...
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~-g-----~~v~vie~~~~   34 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADK-G-----LRVLLLEKKSF   34 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccCC
Confidence            589999999999999999998 8     89999999864

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK07023 short chain dehydrogenase; Provisional

Probab=90.59  E-value=0.38  Score=43.54  Aligned_cols=35  Identities=17%  Similarity=0.286  Sum_probs=31.6

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ||+|.|.|+ |.+|..++..|++. |     ++|.+.+|+.+
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~-G-----~~v~~~~r~~~   36 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQP-G-----IAVLGVARSRH   36 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhC-C-----CEEEEEecCcc
Confidence            579999997 99999999999998 8     89999999864

>PRK08244 hypothetical protein; Provisional

Probab=90.59  E-value=0.32  Score=49.49  Aligned_cols=35  Identities=20%  Similarity=0.338  Sum_probs=31.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      ..|.|||+|..|.++|..|++. |     ++|+++++.++.
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~-G-----~~v~viEr~~~~   37 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALA-G-----VKTCVIERLKET   37 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCCC
Confidence            4799999999999999999999 8     999999997653

>PRK08177 short chain dehydrogenase; Provisional

Probab=90.55  E-value=0.49  Score=42.41  Aligned_cols=38  Identities=16%  Similarity=0.088  Sum_probs=32.9

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      |+++.|.|+ |.+|.+++..|++. |     ++|.+++|+++..+
T Consensus         1 ~k~vlItG~sg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~~   39 (225)
T PRK08177          1 KRTALIIGASRGLGLGLVDRLLER-G-----WQVTATVRGPQQDT   39 (225)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHhC-C-----CEEEEEeCCCcchH
Confidence            357899995 99999999999999 8     89999999986543

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=90.52  E-value=1.5  Score=42.86  Aligned_cols=39  Identities=23%  Similarity=0.186  Sum_probs=29.3

Q ss_pred             hcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          158 VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       158 ~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                      .+++|++|.|.+...-+++..+++.   .   +.++|+.+.-+-.
T Consensus        64 ~~~~Divf~~ag~~~s~~~~p~~~~---~---G~~VIdnsSa~Rm  102 (334)
T COG0136          64 FSDVDIVFFAAGGSVSKEVEPKAAE---A---GCVVIDNSSAFRM  102 (334)
T ss_pred             cccCCEEEEeCchHHHHHHHHHHHH---c---CCEEEeCCccccc
Confidence            5589999999998888888877764   2   6788877654443

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=90.47  E-value=0.35  Score=49.91  Aligned_cols=35  Identities=29%  Similarity=0.358  Sum_probs=32.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ..+|+|||+|..|.++|..|++. |     ++|+++++.++
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~-G-----~~v~v~Er~~~   44 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQY-G-----VRVLVLERWPT   44 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence            46899999999999999999998 8     99999999875

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=90.45  E-value=0.51  Score=43.78  Aligned_cols=34  Identities=24%  Similarity=0.181  Sum_probs=30.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||.|+|+|.+|+.++..|++. |.    .+++++|.+.
T Consensus        12 ~~VlVvG~GGvGs~va~~Lar~-GV----g~i~LvD~D~   45 (231)
T cd00755          12 AHVAVVGLGGVGSWAAEALARS-GV----GKLTLIDFDV   45 (231)
T ss_pred             CCEEEECCCHHHHHHHHHHHHc-CC----CEEEEECCCE
Confidence            6999999999999999999999 82    4788998875

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK06184 hypothetical protein; Provisional

Probab=90.43  E-value=0.38  Score=49.15  Aligned_cols=35  Identities=26%  Similarity=0.377  Sum_probs=32.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      ..|.|||+|..|.++|..|++. |     ++|+++++.++.
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~-G-----i~v~viE~~~~~   38 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARR-G-----VSFRLIEKAPEP   38 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCCCC
Confidence            5799999999999999999999 8     999999997654

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=90.37  E-value=0.35  Score=51.64  Aligned_cols=34  Identities=21%  Similarity=0.348  Sum_probs=31.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      +.+|.|||+|.-|.++|..|++. |     ++|++|.|.+
T Consensus        81 ~~~VlIVGgGIaGLalAlaL~r~-G-----i~V~V~Er~~  114 (668)
T PLN02927         81 KSRVLVAGGGIGGLVFALAAKKK-G-----FDVLVFEKDL  114 (668)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeccc
Confidence            47999999999999999999999 8     9999999975

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.37  E-value=0.31  Score=49.57  Aligned_cols=36  Identities=19%  Similarity=0.267  Sum_probs=32.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      .++|+|||||+-|.+.|..|.+. |     ++|+++.|+.+.
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~-g-----~~v~vfEr~~~i   41 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLRE-G-----HEVVVFERTDDI   41 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHC-C-----CCceEEEecCCc
Confidence            47999999999999999999998 8     999999888764

>PTZ00188 adrenodoxin reductase; Provisional

Probab=90.33  E-value=0.52  Score=48.58  Aligned_cols=36  Identities=19%  Similarity=0.291  Sum_probs=30.8

Q ss_pred             CCceEEEECCCHHHHHHHHHHH-HhcCCCCCCeeEEEEecCCc
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La-~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .++||+|||+|.-|.+.|..|+ +. |     ++|++|.+.+.
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~-g-----~~VtlfEk~p~   74 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHE-R-----VKVDIFEKLPN   74 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhc-C-----CeEEEEecCCC
Confidence            4579999999999999999765 45 6     89999999874

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.26  E-value=0.58  Score=47.93  Aligned_cols=34  Identities=21%  Similarity=0.201  Sum_probs=30.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ++|.|+|+|..|.+.+..|... |     .+|+++|++++
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~-G-----~~v~~~D~~~~   46 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRF-G-----ARPTVCDDDPD   46 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHC-C-----CEEEEEcCCHH
Confidence            6899999999999999988888 8     89999997653

>PRK08017 oxidoreductase; Provisional

Probab=90.23  E-value=0.44  Score=43.26  Aligned_cols=37  Identities=16%  Similarity=0.096  Sum_probs=32.5

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ++|.|.|+ |.+|.+++..|++. |     ++|.+++|+++..+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~-g-----~~v~~~~r~~~~~~   40 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRR-G-----YRVLAACRKPDDVA   40 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHhH
Confidence            47999998 99999999999998 8     89999999876543

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=90.22  E-value=0.43  Score=46.98  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=29.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ..|+|||+|.+|.++|..|++.+    ++++|+++++..
T Consensus         3 ~dVvIIGgGi~G~s~A~~La~~~----~g~~V~llE~~~   37 (393)
T PRK11728          3 YDFVIIGGGIVGLSTAMQLQERY----PGARIAVLEKES   37 (393)
T ss_pred             ccEEEECCcHHHHHHHHHHHHhC----CCCeEEEEeCCC
Confidence            47999999999999999999752    128999999975

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=90.17  E-value=0.67  Score=46.85  Aligned_cols=34  Identities=18%  Similarity=0.314  Sum_probs=31.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .++|+|||+|.-|.+.|..|++. |     ++|+++++.+
T Consensus       133 ~~~V~IIG~G~aGl~aA~~l~~~-G-----~~V~vie~~~  166 (449)
T TIGR01316       133 HKKVAVIGAGPAGLACASELAKA-G-----HSVTVFEALH  166 (449)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC-C-----CcEEEEecCC
Confidence            47999999999999999999998 8     9999999865

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=90.14  E-value=0.45  Score=49.07  Aligned_cols=37  Identities=24%  Similarity=0.245  Sum_probs=30.0

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ....|+|||+|.||+++|..|++..+    ..+|.++++..
T Consensus        44 ~~~DVvIIGGGI~G~a~A~~La~~~~----~~~V~VlEk~~   80 (497)
T PTZ00383         44 DVYDVVIVGGGVTGTALFYTLSKFTN----LKKIALIERRS   80 (497)
T ss_pred             CcccEEEECccHHHHHHHHHHHhhCC----CCEEEEEecCc
Confidence            34689999999999999999998512    15899998864

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=90.00  E-value=0.38  Score=48.76  Aligned_cols=33  Identities=21%  Similarity=0.276  Sum_probs=30.4

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +|+|||+|-.|+..|..|++. |     ++|+++.+.+.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~-G-----~~V~LiE~rp~   34 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQA-G-----VPVILYEMRPE   34 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecccc
Confidence            799999999999999999999 8     99999987654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=89.95  E-value=0.42  Score=44.34  Aligned_cols=32  Identities=16%  Similarity=0.145  Sum_probs=29.4

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      +|+|||+|.-|.+.|..|++. |     ++|+++++..
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~   33 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARA-N-----LKTLIIEGME   33 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeccC
Confidence            689999999999999999998 8     8999999764

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=89.92  E-value=1.5  Score=43.43  Aligned_cols=40  Identities=20%  Similarity=0.226  Sum_probs=28.9

Q ss_pred             HhcCCCEEEEecCchhHHHHHHHHHhhhhccCCC--CEEEEeeecCcc
Q 019978          157 AVWDADIVINGLPSTETKEVFEEISRYWKERITV--PVIISLAKGVEA  202 (333)
Q Consensus       157 a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~--~~Ivs~~kGi~~  202 (333)
                      ...+.|++|+|.++...+++...++.   .   +  +++|+.+.-+-.
T Consensus        61 ~~~~vDivffa~g~~~s~~~~p~~~~---a---G~~~~VIDnSSa~Rm  102 (366)
T TIGR01745        61 ALKALDIIITCQGGDYTNEIYPKLRE---S---GWQGYWIDAASSLRM  102 (366)
T ss_pred             cccCCCEEEEcCCHHHHHHHHHHHHh---C---CCCeEEEECChhhhc
Confidence            46789999999999877777776654   2   4  567777655443

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=89.89  E-value=1.7  Score=42.46  Aligned_cols=37  Identities=24%  Similarity=0.340  Sum_probs=29.9

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +|+|+|+|.+|...+..+... |.    .+|++.++++++++
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~-Ga----~~Viv~d~~~~Rl~  207 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLL-GA----SVVIVVDRSPERLE  207 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CC----ceEEEeCCCHHHHH
Confidence            899999999999987666665 62    57888899887664

>TIGR02130 dapB_plant dihydrodipicolinate reductase

Probab=89.88  E-value=3.8  Score=39.09  Aligned_cols=70  Identities=13%  Similarity=0.104  Sum_probs=42.6

Q ss_pred             ecCHHHHhcC-CC-EEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcE
Q 019978          151 VTNLQEAVWD-AD-IVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI  228 (333)
Q Consensus       151 t~d~~ea~~~-aD-lIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~  228 (333)
                      .+++++.++. +| ++|=.+.+..+.+.++....   .   +..+|.-|.|+..+.        ..+ +.+.-     .+
T Consensus        58 ~~~l~~~~~~~~d~VvIDFT~P~~~~~n~~~~~~---~---gv~~ViGTTG~~~~~--------~~~-l~~~~-----~i  117 (275)
T TIGR02130        58 EARIGEVFAKYPELICIDYTHPSAVNDNAAFYGK---H---GIPFVMGTTGGDREA--------LAK-LVADA-----KH  117 (275)
T ss_pred             cccHHHHHhhcCCEEEEECCChHHHHHHHHHHHH---C---CCCEEEcCCCCCHHH--------HHH-HHHhc-----CC
Confidence            5778777766 89 77777777666666554433   2   456777777887652        112 22211     14


Q ss_pred             EEEcCCCchHHH
Q 019978          229 LYLGGPNIASEI  240 (333)
Q Consensus       229 ~vl~GP~~a~ev  240 (333)
                      .++..||+..-+
T Consensus       118 ~~l~apNfSiGv  129 (275)
T TIGR02130       118 PAVIAPNMAKQI  129 (275)
T ss_pred             CEEEECcccHHH
Confidence            578889987543

This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=89.80  E-value=0.49  Score=49.14  Aligned_cols=33  Identities=18%  Similarity=0.197  Sum_probs=30.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ..|+|||+|..|.++|..|++. |     .+|.+++++.
T Consensus         7 ~DVvIIGGGi~G~~iA~~La~r-G-----~~V~LlEk~d   39 (546)
T PRK11101          7 TDVIIIGGGATGAGIARDCALR-G-----LRCILVERHD   39 (546)
T ss_pred             ccEEEECcCHHHHHHHHHHHHc-C-----CeEEEEECCC
Confidence            5799999999999999999999 8     8999999853

>PRK11445 putative oxidoreductase; Provisional

Probab=89.78  E-value=0.43  Score=46.42  Aligned_cols=34  Identities=15%  Similarity=0.259  Sum_probs=30.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +..|+|||+|.-|+++|..|++.       ++|+++++.++
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~-------~~V~liE~~~~   34 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-------MKVIAIDKKHQ   34 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc-------CCEEEEECCCc
Confidence            35899999999999999999876       68999998864

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=89.75  E-value=0.47  Score=45.73  Aligned_cols=36  Identities=8%  Similarity=0.056  Sum_probs=30.3

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ||||.|.|+ |.+|+.++..|.++.|     ++|+.++|+.+
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~-----~~V~~~~r~~~   37 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTD-----WEVYGMDMQTD   37 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCC-----CeEEEEeCcHH
Confidence            479999997 9999999999987414     89999998654

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=89.71  E-value=0.5  Score=46.60  Aligned_cols=33  Identities=18%  Similarity=0.307  Sum_probs=28.2

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~   82 (333)
                      .|+|||+|.+|++.|..|++..|     . +|++++++.
T Consensus        32 dvvIIGgGi~G~s~A~~L~~~~g-----~~~V~vle~~~   65 (407)
T TIGR01373        32 DVIIVGGGGHGLATAYYLAKEHG-----ITNVAVLEKGW   65 (407)
T ss_pred             CEEEECCcHHHHHHHHHHHHhcC-----CCeEEEEEccc
Confidence            69999999999999999998315     4 899998863

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=89.68  E-value=0.82  Score=43.97  Aligned_cols=33  Identities=27%  Similarity=0.379  Sum_probs=28.6

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ||.|||+|..|+.++..|+.. |.    -+++++|.+.
T Consensus         1 kVlVVGaGGlG~eilknLal~-Gv----g~I~IvD~D~   33 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALS-GF----RNIHVIDMDT   33 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHc-CC----CeEEEECCCE
Confidence            689999999999999999998 82    4688888765

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=89.67  E-value=0.48  Score=46.51  Aligned_cols=35  Identities=29%  Similarity=0.246  Sum_probs=31.7

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ..|||.|.|+ |.+|+.++..|.+. |     |+|+.++|..
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~-G-----~~V~~v~r~~   55 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAE-G-----HYIIASDWKK   55 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhC-C-----CEEEEEEecc
Confidence            4589999997 99999999999998 8     9999999864

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=89.64  E-value=0.41  Score=50.73  Aligned_cols=36  Identities=25%  Similarity=0.345  Sum_probs=32.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHH-hcCCCCCCeeEEEEecCCcc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQD-SYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~-~~G~~~~~~~V~l~~r~~~~   84 (333)
                      ..+|.|||||..|.++|..|++ . |     .+|+++++.++.
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~-G-----i~v~IiE~~~~~   68 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFP-D-----ITTRIVERKPGR   68 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCC-C-----CcEEEEEcCCCC
Confidence            5789999999999999999998 6 7     899999988753

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=89.64  E-value=3.2  Score=39.77  Aligned_cols=92  Identities=17%  Similarity=0.212  Sum_probs=63.1

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ..||.|.|. |..|+.+-..+... |     .+ .+|..++.+-.                         ...       
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~-g-----~~-~v~~V~p~~~~-------------------------~~v-------   46 (286)
T TIGR01019         6 DTKVIVQGITGSQGSFHTEQMLAY-G-----TN-IVGGVTPGKGG-------------------------TTV-------   46 (286)
T ss_pred             CCcEEEecCCcHHHHHHHHHHHhC-C-----CC-EEEEECCCCCc-------------------------cee-------
Confidence            358999995 99999999998776 7     66 66666663100                         001       


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~--aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                              ..+.+..+.++.-+.  .|+.++++|+..+.+++++....   +  -..++.++.|
T Consensus        47 ------------------------~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l~e~~~~---G--vk~avIis~G   97 (286)
T TIGR01019        47 ------------------------LGLPVFDSVKEAVEETGANASVIFVPAPFAADAIFEAIDA---G--IELIVCITEG   97 (286)
T ss_pred             ------------------------cCeeccCCHHHHhhccCCCEEEEecCHHHHHHHHHHHHHC---C--CCEEEEECCC
Confidence                                    123444555554444  79999999999999999997752   1  2355667888


Q ss_pred             Ccc
Q 019978          200 VEA  202 (333)
Q Consensus       200 i~~  202 (333)
                      +..
T Consensus        98 f~e  100 (286)
T TIGR01019        98 IPV  100 (286)
T ss_pred             CCH
Confidence            864

ATP citrate lyases appear to form an outgroup.

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.63  E-value=0.58  Score=42.19  Aligned_cols=37  Identities=14%  Similarity=0.180  Sum_probs=32.9

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ++|.|+|+ |.+|..++..|++. |     ++|++.+|+++..+
T Consensus         6 ~~vlItGasg~iG~~l~~~l~~~-G-----~~V~~~~r~~~~~~   43 (251)
T PRK07231          6 KVAIVTGASSGIGEGIARRFAAE-G-----ARVVVTDRNEEAAE   43 (251)
T ss_pred             cEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence            68999997 99999999999999 8     89999999986543

>PLN03075 nicotianamine synthase; Provisional

Probab=89.58  E-value=3.3  Score=39.96  Aligned_cols=41  Identities=12%  Similarity=0.095  Sum_probs=29.0

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+.+|+.||+|..|..-...++.. .   ++-.++-+|++++.++
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~-~---p~~~~~giD~d~~ai~  163 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHH-L---PTTSFHNFDIDPSAND  163 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhc-C---CCCEEEEEeCCHHHHH
Confidence            668999999999877655544433 1   1146889999987654

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=89.58  E-value=0.53  Score=48.42  Aligned_cols=33  Identities=12%  Similarity=0.250  Sum_probs=30.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      ...|.|||+|..|.++|..+++. |     .+|.++.++
T Consensus         6 ~~DVvIIGGGi~G~~~A~~la~r-G-----l~V~LvEk~   38 (508)
T PRK12266          6 TYDLLVIGGGINGAGIARDAAGR-G-----LSVLLCEQD   38 (508)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC-C-----CeEEEEecC
Confidence            35799999999999999999999 8     899999986

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=89.50  E-value=0.88  Score=46.56  Aligned_cols=34  Identities=24%  Similarity=0.435  Sum_probs=31.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ++|+|||+|..|...|..|++. |     ++|+++++.+.
T Consensus       144 ~~V~IIGaG~aGl~aA~~L~~~-g-----~~V~v~e~~~~  177 (485)
T TIGR01317       144 KKVAVVGSGPAGLAAADQLNRA-G-----HTVTVFEREDR  177 (485)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc-C-----CeEEEEecCCC
Confidence            7999999999999999999998 8     89999988653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=89.48  E-value=0.51  Score=46.97  Aligned_cols=33  Identities=21%  Similarity=0.306  Sum_probs=29.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ++|+|||+|..|.++|..|++. |     .+|.+++++.
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~-G-----~~V~viEk~~   34 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQL-N-----KRVLVVEKRN   34 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEecCC
Confidence            5799999999999999999988 7     8999998754

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=89.48  E-value=0.41  Score=48.00  Aligned_cols=31  Identities=23%  Similarity=0.333  Sum_probs=28.6

Q ss_pred             eEEEECCCHHHHHHHHHHHH----hcCCCCCCeeEEEEecC
Q 019978           45 RIVGVGAGAWGSVFTAMLQD----SYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~----~~G~~~~~~~V~l~~r~   81 (333)
                      .|.|||+|..|.++|..|++    . |     ++|+++++.
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~-G-----~~v~viE~~   36 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTK-D-----LKVLLLDAV   36 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccC-C-----CeEEEEeCC
Confidence            58999999999999999998    6 7     999999984

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK12831 putative oxidoreductase; Provisional

Probab=89.31  E-value=0.62  Score=47.43  Aligned_cols=35  Identities=17%  Similarity=0.252  Sum_probs=31.6

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ..++|+|||+|.-|.+.|..|++. |     ++|+++++.+
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~-G-----~~V~v~e~~~  173 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKM-G-----YDVTIFEALH  173 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEecCC
Confidence            457999999999999999999998 8     9999998754

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=89.25  E-value=0.73  Score=44.62  Aligned_cols=36  Identities=19%  Similarity=0.040  Sum_probs=31.7

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .+|||.|.|+ |.+|+.++..|.++ |     ++|+.++|...
T Consensus        14 ~~~~vlVtGatGfiG~~lv~~L~~~-g-----~~V~~~d~~~~   50 (348)
T PRK15181         14 APKRWLITGVAGFIGSGLLEELLFL-N-----QTVIGLDNFST   50 (348)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHHC-C-----CEEEEEeCCCC
Confidence            3489999996 99999999999999 8     89999998653

>PRK07326 short chain dehydrogenase; Provisional

Probab=89.19  E-value=0.71  Score=41.38  Aligned_cols=37  Identities=16%  Similarity=0.186  Sum_probs=32.4

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ++|.|+|+ |.+|..++..|++. |     ++|++.+|+++..+
T Consensus         7 ~~ilItGatg~iG~~la~~l~~~-g-----~~V~~~~r~~~~~~   44 (237)
T PRK07326          7 KVALITGGSKGIGFAIAEALLAE-G-----YKVAITARDQKELE   44 (237)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHC-C-----CEEEEeeCCHHHHH
Confidence            68999996 99999999999998 8     89999999876543

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=89.01  E-value=0.62  Score=46.81  Aligned_cols=37  Identities=22%  Similarity=0.235  Sum_probs=31.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ||||.|||+|.-|...|..|.+. +   ++++|+++++++.
T Consensus         1 m~~VVIIGgG~aG~~aA~~l~~~-~---~~~~I~li~~~~~   37 (438)
T PRK13512          1 MPKIIVVGAVAGGATCASQIRRL-D---KESDIIIFEKDRD   37 (438)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhh-C---CCCCEEEEECCCC
Confidence            57999999999999999999875 3   2379999999864

>PRK06101 short chain dehydrogenase; Provisional

Probab=89.00  E-value=0.59  Score=42.41  Aligned_cols=37  Identities=16%  Similarity=0.174  Sum_probs=32.2

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .++.|.|+ |.+|..++..|++. |     ++|.+++|+++..+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~-G-----~~V~~~~r~~~~~~   39 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQ-G-----WQVIACGRNQSVLD   39 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhC-C-----CEEEEEECCHHHHH
Confidence            57889995 99999999999999 8     89999999876543

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=88.97  E-value=0.6  Score=40.93  Aligned_cols=33  Identities=30%  Similarity=0.390  Sum_probs=26.0

Q ss_pred             EEECCCHHHHHHHHHHHHhcCCCCCCee-EEEEecCCcch
Q 019978           47 VGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSV   85 (333)
Q Consensus        47 ~IIGaG~mG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~   85 (333)
                      +|||||.-|.+.|..|.+. |     .+ |++++++.+.-
T Consensus         1 ~IIGaG~aGl~~a~~l~~~-g-----~~~v~v~e~~~~~G   34 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLER-G-----IDPVVVLERNDRPG   34 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHT-T--------EEEEESSSSST
T ss_pred             CEECcCHHHHHHHHHHHhC-C-----CCcEEEEeCCCCCC
Confidence            5999999999999999999 8     77 99999987643

...

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=88.94  E-value=7.3  Score=33.79  Aligned_cols=33  Identities=21%  Similarity=0.321  Sum_probs=27.6

Q ss_pred             ceEEEEC-C-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVG-A-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIG-a-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||++|| . +++..+++..++.- |     .+|++.....
T Consensus         3 l~i~~vGD~~~rv~~Sl~~~~~~~-g-----~~~~~~~P~~   37 (158)
T PF00185_consen    3 LKIAYVGDGHNRVAHSLIELLAKF-G-----MEVVLIAPEG   37 (158)
T ss_dssp             EEEEEESSTTSHHHHHHHHHHHHT-T-----SEEEEESSGG
T ss_pred             CEEEEECCCCChHHHHHHHHHHHc-C-----CEEEEECCCc
Confidence            6899999 4 89999999999987 8     7777776654

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=88.91  E-value=0.57  Score=46.38  Aligned_cols=36  Identities=25%  Similarity=0.339  Sum_probs=32.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      ++-|+|||||.-|++.|..|+++ |     .+|.++.+..+.
T Consensus         3 ~~DVvIVGaGPAGs~aA~~la~~-G-----~~VlvlEk~~~~   38 (396)
T COG0644           3 EYDVVIVGAGPAGSSAARRLAKA-G-----LDVLVLEKGSEP   38 (396)
T ss_pred             eeeEEEECCchHHHHHHHHHHHc-C-----CeEEEEecCCCC
Confidence            46799999999999999999999 8     899999997754

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=88.80  E-value=3.5  Score=38.16  Aligned_cols=34  Identities=12%  Similarity=0.221  Sum_probs=29.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .++|.|||+|.+|..=+..|.+. |     -+|++++..-
T Consensus        25 ~~~VLVVGGG~VA~RK~~~Ll~~-g-----A~VtVVap~i   58 (223)
T PRK05562         25 KIKVLIIGGGKAAFIKGKTFLKK-G-----CYVYILSKKF   58 (223)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcCCC
Confidence            36899999999999988899888 7     8999998654

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=88.79  E-value=0.56  Score=46.13  Aligned_cols=31  Identities=19%  Similarity=0.375  Sum_probs=29.3

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      .|.|||+|.-|++.|..|++. |     ++|.++++.
T Consensus         2 DVvIVGaGpAG~~aA~~La~~-G-----~~V~l~E~~   32 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARA-G-----IETILLERA   32 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECC
Confidence            589999999999999999999 8     999999987

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=88.78  E-value=4.5  Score=40.07  Aligned_cols=42  Identities=26%  Similarity=0.403  Sum_probs=31.6

Q ss_pred             CCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchh
Q 019978           40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVD   86 (333)
Q Consensus        40 ~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~   86 (333)
                      +..+-||++||+|-||+.+....+.-.|     .+|. +-+|+-+.+.
T Consensus        14 ~G~PiRVGlIGAG~mG~~ivtQi~~m~G-----m~vvaisd~~~~~ak   56 (438)
T COG4091          14 EGKPIRVGLIGAGEMGTGIVTQIASMPG-----MEVVAISDRNLDAAK   56 (438)
T ss_pred             cCCceEEEEecccccchHHHHHHhhcCC-----ceEEEEecccchHHH
Confidence            3567899999999999999999876535     5544 5577766543

>PRK07233 hypothetical protein; Provisional

Probab=88.76  E-value=0.54  Score=46.22  Aligned_cols=32  Identities=22%  Similarity=0.301  Sum_probs=29.6

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ||+|||+|.-|.+-|..|++. |     ++|+++.+..
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~-G-----~~v~vlE~~~   32 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKR-G-----HEVTVFEADD   32 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHC-C-----CcEEEEEeCC
Confidence            689999999999999999999 8     8999998776

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.67  E-value=0.65  Score=47.14  Aligned_cols=34  Identities=24%  Similarity=0.288  Sum_probs=30.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .++|.|+|+|..|..+|..|++. |     ++|+++++++
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~-G-----~~V~~~d~~~   49 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLEL-G-----ARVTVVDDGD   49 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCc
Confidence            35899999999999999999988 8     8999999765

>PRK07190 hypothetical protein; Provisional

Probab=88.67  E-value=0.66  Score=47.56  Aligned_cols=34  Identities=24%  Similarity=0.235  Sum_probs=31.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ..|.|||+|..|.++|..|++. |     .+|.++++.++
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~-G-----i~V~llEr~~~   39 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLC-G-----LNTVIVDKSDG   39 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHc-C-----CCEEEEeCCCc
Confidence            5799999999999999999998 8     89999999875

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=88.62  E-value=0.93  Score=47.54  Aligned_cols=57  Identities=18%  Similarity=0.122  Sum_probs=40.4

Q ss_pred             cccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           21 TNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +||+.+.- ..+   ......+.++|.|||+|--|.+-|..|++. |.+.+ ++|+++.+.+.
T Consensus         4 ~~~~~~~~-~~~---~~~~~~~~~~a~IIGaGiAGLAAA~~L~~d-g~~~G-~~VtIlEk~~~   60 (576)
T PRK13977          4 SNGNYEAF-ARP---RKPEGVDNKKAYIIGSGLASLAAAVFLIRD-GQMPG-ENITILEELDV   60 (576)
T ss_pred             CCCcHHHh-ccC---CCCCCCCCCeEEEECCCHHHHHHHHHHHHc-cCCCC-CcEEEEeCCCC
Confidence            45665542 222   222334568999999999999999999987 54333 79999988763

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=88.62  E-value=3.1  Score=38.11  Aligned_cols=33  Identities=15%  Similarity=0.174  Sum_probs=30.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ++|.|||.|..|..=+..|.+. |     -+|++|+...
T Consensus        13 k~VlvvGgG~va~rKa~~ll~~-g-----a~v~Vvs~~~   45 (210)
T COG1648          13 KKVLVVGGGSVALRKARLLLKA-G-----ADVTVVSPEF   45 (210)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc-C-----CEEEEEcCCc
Confidence            6999999999999999999998 8     8999998776

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=88.60  E-value=0.56  Score=45.69  Aligned_cols=33  Identities=18%  Similarity=0.292  Sum_probs=28.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHh--cCCCCCCeeEEEEecC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDS--YGYLRDKVLIRIWRRP   81 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~--~G~~~~~~~V~l~~r~   81 (333)
                      ++|.|||+|..|.++|..|++.  .|     ++|+++++.
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G-----~~v~v~E~~   38 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGG-----LPVALIEAF   38 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCC-----CEEEEEeCC
Confidence            6899999999999999999773  15     899999994

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=88.58  E-value=0.65  Score=47.79  Aligned_cols=37  Identities=16%  Similarity=0.304  Sum_probs=30.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ...|+|||+|.||+++|..|++. +   ++++|.++.+...
T Consensus         5 ~~DVvIIGgGIiG~slA~~L~~~-~---~g~~V~VlEk~~~   41 (494)
T PRK05257          5 KTDVVLIGGGIMSATLGTLLKEL-E---PEWSITMFERLDG   41 (494)
T ss_pred             cceEEEECcHHHHHHHHHHHHHh-C---CCCeEEEEEcCCc
Confidence            35799999999999999999984 2   1278999998753

>PRK06194 hypothetical protein; Provisional

Probab=88.54  E-value=0.91  Score=42.17  Aligned_cols=37  Identities=19%  Similarity=0.223  Sum_probs=32.4

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ++|.|.|+ |.+|..++..|++. |     ++|++++|+.+..+
T Consensus         7 k~vlVtGasggIG~~la~~l~~~-G-----~~V~~~~r~~~~~~   44 (287)
T PRK06194          7 KVAVITGAASGFGLAFARIGAAL-G-----MKLVLADVQQDALD   44 (287)
T ss_pred             CEEEEeCCccHHHHHHHHHHHHC-C-----CEEEEEeCChHHHH
Confidence            68999996 99999999999999 8     89999999876543

>PRK06834 hypothetical protein; Provisional

Probab=88.53  E-value=0.6  Score=47.84  Aligned_cols=34  Identities=26%  Similarity=0.306  Sum_probs=31.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ..|.|||+|..|.++|..|++. |     ++|+++++.++
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~-G-----~~v~vlEr~~~   37 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALA-G-----VDVAIVERRPN   37 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence            4799999999999999999999 8     99999998764

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=88.50  E-value=0.64  Score=46.65  Aligned_cols=35  Identities=29%  Similarity=0.351  Sum_probs=31.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ...|.|||+|.-|++.|..|+++ |     ++|.++++.+.
T Consensus         5 ~~DViIVGaGpAG~~aA~~La~~-G-----~~V~llEr~~~   39 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLARE-G-----AQVLVIERGNS   39 (428)
T ss_pred             cCcEEEECcCHHHHHHHHHHHhC-C-----CeEEEEEcCCC
Confidence            46899999999999999999999 8     99999998753

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.49  E-value=2.7  Score=41.32  Aligned_cols=89  Identities=19%  Similarity=0.151  Sum_probs=55.5

Q ss_pred             CCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhh
Q 019978           40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE  118 (333)
Q Consensus        40 ~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~  118 (333)
                      ....-|++|+|+|.|+.-++..|.-. -  +.+|.|+ +++|+.+++.+.         .++         |.  ++   
T Consensus         3 ~s~~ir~Gi~g~g~ia~~f~~al~~~-p--~s~~~Ivava~~s~~~A~~f---------Aq~---------~~--~~---   56 (351)
T KOG2741|consen    3 DSATIRWGIVGAGRIARDFVRALHTL-P--ESNHQIVAVADPSLERAKEF---------AQR---------HN--IP---   56 (351)
T ss_pred             CCceeEEEEeehhHHHHHHHHHhccC-c--ccCcEEEEEecccHHHHHHH---------HHh---------cC--CC---
Confidence            34457999999999999999888533 1  1237765 566655543221         111         10  11   


Q ss_pred             hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCC--CEEEEecCchhHHHHHHHHHh
Q 019978          119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDA--DIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~a--DlIIlaVps~~~~~vl~~i~~  182 (333)
                                                  +.++..+.|+.+++.  |+|.+++|..+.-+++--+..
T Consensus        57 ----------------------------~~k~y~syEeLakd~~vDvVyi~~~~~qH~evv~l~l~   94 (351)
T KOG2741|consen   57 ----------------------------NPKAYGSYEELAKDPEVDVVYISTPNPQHYEVVMLALN   94 (351)
T ss_pred             ----------------------------CCccccCHHHHhcCCCcCEEEeCCCCccHHHHHHHHHH
Confidence                                        234456677777765  999999997766666655443

>PRK07208 hypothetical protein; Provisional

Probab=88.48  E-value=0.69  Score=46.70  Aligned_cols=35  Identities=20%  Similarity=0.230  Sum_probs=31.2

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ++++|+|||+|.-|.+.|..|++. |     ++|+++..++
T Consensus         3 ~~~~vvIiGaGisGL~aA~~L~~~-g-----~~v~v~E~~~   37 (479)
T PRK07208          3 NKKSVVIIGAGPAGLTAAYELLKR-G-----YPVTVLEADP   37 (479)
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHC-C-----CcEEEEecCC
Confidence            456899999999999999999998 8     8999998755

>PRK07024 short chain dehydrogenase; Provisional

Probab=88.46  E-value=0.71  Score=42.28  Aligned_cols=37  Identities=16%  Similarity=0.300  Sum_probs=32.3

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ++|.|.|+ |.+|.+++..|++. |     ++|.+.+|+++.++
T Consensus         3 ~~vlItGas~gIG~~la~~l~~~-G-----~~v~~~~r~~~~~~   40 (257)
T PRK07024          3 LKVFITGASSGIGQALAREYARQ-G-----ATLGLVARRTDALQ   40 (257)
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence            68999995 99999999999999 8     89999999876543

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=88.40  E-value=0.72  Score=43.94  Aligned_cols=33  Identities=24%  Similarity=0.273  Sum_probs=29.6

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      |||.|.|+ |.+|..++..|.+. |     ++|++++|..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~~~~   34 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQN-G-----HDVVILDNLC   34 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence            78999995 99999999999999 8     9999988754

>PRK05993 short chain dehydrogenase; Provisional

Probab=88.39  E-value=0.71  Score=42.98  Aligned_cols=37  Identities=22%  Similarity=0.186  Sum_probs=32.8

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ++|.|.|+ |.+|.++|..|++. |     ++|.+.+|+++.++
T Consensus         5 k~vlItGasggiG~~la~~l~~~-G-----~~Vi~~~r~~~~~~   42 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQSD-G-----WRVFATCRKEEDVA   42 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence            47899998 99999999999999 8     89999999886554

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=88.38  E-value=0.65  Score=48.33  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=30.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      -++|+|||+|..|.+.|..|++. |     ++|+++++.+
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~-G-----~~V~v~e~~~  170 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRM-G-----HAVTIFEAGP  170 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence            36999999999999999999998 8     8999998764

>PRK12939 short chain dehydrogenase; Provisional

Probab=88.34  E-value=0.96  Score=40.71  Aligned_cols=37  Identities=19%  Similarity=0.290  Sum_probs=32.6

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ++|.|.|+ |.+|..++..|++. |     ++|.+.+|+++..+
T Consensus         8 ~~vlItGa~g~iG~~la~~l~~~-G-----~~v~~~~r~~~~~~   45 (250)
T PRK12939          8 KRALVTGAARGLGAAFAEALAEA-G-----ATVAFNDGLAAEAR   45 (250)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence            78999997 99999999999998 8     89999999876543

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=88.26  E-value=1.7  Score=48.57  Aligned_cols=35  Identities=14%  Similarity=0.130  Sum_probs=30.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .+|.|+|+|.+|+-+|..|+.. |.    ..++++|.+.-
T Consensus        25 s~VLIiG~gGLG~EiaKnL~la-GV----g~iti~D~d~v   59 (1008)
T TIGR01408        25 SNVLISGMGGLGLEIAKNLVLA-GV----KSVTLHDTEKC   59 (1008)
T ss_pred             CcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCee
Confidence            5899999999999999999999 83    47999987753

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=88.21  E-value=0.95  Score=41.25  Aligned_cols=37  Identities=16%  Similarity=0.196  Sum_probs=32.7

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ++|.|.|+ |.+|.+++..|++. |     ++|.+.+|+++..+
T Consensus        11 k~vlItGa~g~iG~~ia~~l~~~-G-----~~V~~~~r~~~~~~   48 (255)
T PRK07523         11 RRALVTGSSQGIGYALAEGLAQA-G-----AEVILNGRDPAKLA   48 (255)
T ss_pred             CEEEEECCcchHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence            68999996 99999999999999 8     89999999876543

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=88.20  E-value=0.88  Score=40.64  Aligned_cols=37  Identities=16%  Similarity=0.247  Sum_probs=32.7

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ++|.|.|+ |.+|..++..|++. |     ++|.+++|+++..+
T Consensus         6 ~~ilItGasg~iG~~l~~~l~~~-g-----~~v~~~~r~~~~~~   43 (246)
T PRK05653          6 KTALVTGASRGIGRAIALRLAAD-G-----AKVVIYDSNEEAAE   43 (246)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCChhHHH
Confidence            68999997 99999999999998 8     89999999976543

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=88.20  E-value=1.1  Score=42.06  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=31.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ..|.|||+|.-|.+.|..|++. |     ++|.++++...
T Consensus        26 ~DVvIVGgGpAGl~AA~~la~~-G-----~~V~liEk~~~   59 (257)
T PRK04176         26 VDVAIVGAGPSGLTAAYYLAKA-G-----LKVAVFERKLS   59 (257)
T ss_pred             CCEEEECccHHHHHHHHHHHhC-C-----CeEEEEecCCC
Confidence            4799999999999999999998 8     99999998764

>COG5495 Uncharacterized conserved protein [Function unknown]

Probab=88.19  E-value=14  Score=34.67  Aligned_cols=156  Identities=12%  Similarity=0.100  Sum_probs=78.7

Q ss_pred             hcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCC------CCcEEEE
Q 019978          158 VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP------IENILYL  231 (333)
Q Consensus       158 ~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~------~~~~~vl  231 (333)
                      .+-.+++|.-+|...+..+......  .+   +++++.++ |....           +++.. ++..      .+|....
T Consensus        65 ael~~~vfv~vpd~~~s~vaa~~~~--rp---g~iv~HcS-ga~~~-----------~il~~-~gr~g~~~asiHP~f~F  126 (289)
T COG5495          65 AELLLLVFVDVPDALYSGVAATSLN--RP---GTIVAHCS-GANGS-----------GILAP-LGRQGCIPASIHPAFSF  126 (289)
T ss_pred             hhhhceEEecchHHHHHHHHHhccc--CC---CeEEEEcc-CCCch-----------hhhhh-hhhcCCcceeecccccc
Confidence            3456888888888866666554332  23   67776654 54432           22322 2221      1222233


Q ss_pred             cCCCchHHHhccCceeEEE-eCCh---hhHHHHHHHhCCCCeEEEecCChhHHHHHHHHHH----HHHHHHHHHhccCCC
Q 019978          232 GGPNIASEIYNKEYANARI-CGAE---KWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKN----VYAIGAGMVAALTNE  303 (333)
Q Consensus       232 ~GP~~a~ev~~~~~~~~~~-~~~~---~~~~~l~~ll~~~~~~v~~s~Di~gve~~~alkN----v~Ai~~Gi~~gl~~~  303 (333)
                      +|-.  ++..+-.-+++.+ ..|+   ...+.+..-+...+|.+....-+.-.....--.|    +++-+.-+....+..
T Consensus       127 sgl~--edl~rl~d~~~~i~eaD~~g~ai~q~la~emgg~~f~V~~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~D  204 (289)
T COG5495         127 SGLD--EDLSRLKDTIFGITEADDVGYAIVQSLALEMGGEPFCVREEARILYHAAAVHASNFIVTVLADALEIYRAAGDD  204 (289)
T ss_pred             cCCH--HHHHhCcccEEEeecccccccHHHHHHHHHhCCCceeechhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCC
Confidence            3322  2222111232223 3333   4677777778888888876555554433322222    233344444333321


Q ss_pred             CCccH---HHHHHHHHHHHHHH--H-HCCCCCCCCC
Q 019978          304 SATSK---SVYFAHCTSEMVVM--H-GMGRSWQKGD  333 (333)
Q Consensus       304 ~~n~~---~~l~~~~~~E~~~l--~-~~G~~~~~~~  333 (333)
                      -....   ..|+.-++.-+.+.  + ++-|++.+||
T Consensus       205 q~e~iv~~~pL~~g~~~n~~qrg~a~aLTgpVaRGD  240 (289)
T COG5495         205 QPELIVEVGPLARGALENTLQRGQACALTGPVARGD  240 (289)
T ss_pred             CcceeeeehHHHHHHHHHHHHhhhhhcccCCcccCc
Confidence            11111   23666666666665  4 7999999998

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=88.16  E-value=0.68  Score=51.35  Aligned_cols=34  Identities=21%  Similarity=0.170  Sum_probs=31.4

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      ..+||+|||+|.-|.+.|..|++. |     |+|++|+..
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~-G-----h~Vtv~E~~  415 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRS-G-----HNVTAIDGL  415 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhC-C-----CeEEEEccc
Confidence            457999999999999999999999 8     999999974

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=88.10  E-value=0.89  Score=39.63  Aligned_cols=32  Identities=22%  Similarity=0.286  Sum_probs=28.9

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      +|.|||+|.-|.+.|..|++. +     .+|.+++..+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~-~-----~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARP-G-----AKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHT-T-----SEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcC-C-----CeEEEEeccc
Confidence            689999999999999999988 7     8999997655

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PLN02214 cinnamoyl-CoA reductase

Probab=88.09  E-value=0.81  Score=44.29  Aligned_cols=38  Identities=18%  Similarity=0.143  Sum_probs=33.1

Q ss_pred             CCCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           41 GDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        41 ~~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      ...++|.|.|+ |.+|+.++..|.++ |     ++|+...|+.+.
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~-G-----~~V~~~~r~~~~   46 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLER-G-----YTVKGTVRNPDD   46 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-c-----CEEEEEeCCchh
Confidence            34578999998 99999999999999 8     999999998653

>PRK07109 short chain dehydrogenase; Provisional

Probab=88.08  E-value=0.91  Score=43.92  Aligned_cols=38  Identities=16%  Similarity=0.218  Sum_probs=33.2

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .++|.|.|+ |.+|.+++..|++. |     ++|++++|+++.++
T Consensus         8 ~k~vlITGas~gIG~~la~~la~~-G-----~~Vvl~~R~~~~l~   46 (334)
T PRK07109          8 RQVVVITGASAGVGRATARAFARR-G-----AKVVLLARGEEGLE   46 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence            368999997 99999999999999 8     89999999876554

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=88.08  E-value=0.69  Score=45.30  Aligned_cols=36  Identities=14%  Similarity=0.222  Sum_probs=30.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .+|.|||+|.-|.++|..|++. |   ++++|+++++.++
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~-g---~g~~v~liE~~~~   37 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQA-A---PHLPVTVVDAAPA   37 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcC-C---CCCEEEEEeCCCc
Confidence            4799999999999999999987 4   1278999999764

>PRK07774 short chain dehydrogenase; Provisional

Probab=88.03  E-value=1.1  Score=40.60  Aligned_cols=36  Identities=17%  Similarity=0.259  Sum_probs=32.2

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      +++.|.|+ |.+|..++..|++. |     ++|++.+|+++..
T Consensus         7 k~vlItGasg~iG~~la~~l~~~-g-----~~vi~~~r~~~~~   43 (250)
T PRK07774          7 KVAIVTGAAGGIGQAYAEALARE-G-----ASVVVADINAEGA   43 (250)
T ss_pred             CEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHH
Confidence            68999997 99999999999999 8     8999999987544

>PLN02778 3,5-epimerase/4-reductase

Probab=88.01  E-value=1.1  Score=42.58  Aligned_cols=39  Identities=21%  Similarity=0.313  Sum_probs=31.6

Q ss_pred             ccCCCCCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           37 GKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        37 ~~~~~~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      |++....|||.|.|+ |.+|+.++..|.+. |     ++|++..++
T Consensus         3 ~~~~~~~~kiLVtG~tGfiG~~l~~~L~~~-g-----~~V~~~~~~   42 (298)
T PLN02778          3 GTAGSATLKFLIYGKTGWIGGLLGKLCQEQ-G-----IDFHYGSGR   42 (298)
T ss_pred             CCCCCCCCeEEEECCCCHHHHHHHHHHHhC-C-----CEEEEecCc
Confidence            345556689999996 99999999999998 8     898765443

>PRK06057 short chain dehydrogenase; Provisional

Probab=88.00  E-value=0.83  Score=41.70  Aligned_cols=36  Identities=14%  Similarity=0.033  Sum_probs=32.3

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      ++|.|+|+ |.+|.+++..|++. |     ++|.+.+|+++..
T Consensus         8 ~~vlItGasggIG~~~a~~l~~~-G-----~~v~~~~r~~~~~   44 (255)
T PRK06057          8 RVAVITGGGSGIGLATARRLAAE-G-----ATVVVGDIDPEAG   44 (255)
T ss_pred             CEEEEECCCchHHHHHHHHHHHc-C-----CEEEEEeCCHHHH
Confidence            68999998 99999999999998 8     8999999987544

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=87.94  E-value=0.65  Score=45.10  Aligned_cols=34  Identities=24%  Similarity=0.338  Sum_probs=29.7

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .|.|||+|..|+++|..|++. |    +++|+++++.+.
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~-G----~~~v~v~E~~~~   34 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRL-G----KIKIALIEANSP   34 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcC-C----CceEEEEeCCCc
Confidence            389999999999999999998 6    279999998764

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07060 short chain dehydrogenase; Provisional

Probab=87.91  E-value=0.82  Score=41.13  Aligned_cols=37  Identities=19%  Similarity=0.267  Sum_probs=32.7

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +++.|.|+ |.+|..++..|++. |     ++|++.+|+++.++
T Consensus        10 ~~~lItGa~g~iG~~~a~~l~~~-g-----~~V~~~~r~~~~~~   47 (245)
T PRK07060         10 KSVLVTGASSGIGRACAVALAQR-G-----ARVVAAARNAAALD   47 (245)
T ss_pred             CEEEEeCCcchHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence            68999998 89999999999999 8     89999999876543

>PRK12829 short chain dehydrogenase; Provisional

Probab=87.90  E-value=0.8  Score=41.70  Aligned_cols=37  Identities=14%  Similarity=0.354  Sum_probs=32.8

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +++.|.|+ |.+|..++..|+++ |     ++|++.+|+++..+
T Consensus        12 ~~vlItGa~g~iG~~~a~~L~~~-g-----~~V~~~~r~~~~~~   49 (264)
T PRK12829         12 LRVLVTGGASGIGRAIAEAFAEA-G-----ARVHVCDVSEAALA   49 (264)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence            69999997 99999999999999 8     89999999876443

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=87.87  E-value=1  Score=40.96  Aligned_cols=38  Identities=13%  Similarity=0.178  Sum_probs=33.1

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .++|.|.|+ |.+|.+++..|++. |     ++|++++|+++.++
T Consensus        11 ~k~ilItGas~~IG~~la~~l~~~-G-----~~v~~~~r~~~~~~   49 (256)
T PRK06124         11 GQVALVTGSARGLGFEIARALAGA-G-----AHVLVNGRNAATLE   49 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHc-C-----CeEEEEeCCHHHHH
Confidence            468999997 99999999999998 8     89999999876543

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=87.83  E-value=0.74  Score=46.71  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=31.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      |++|.|||+|..|...|..+++. |     ++|.++.++.
T Consensus         1 ~~~vvviG~G~~G~~~a~~~~~~-g-----~~v~~~e~~~   34 (466)
T PRK07845          1 MTRIVIIGGGPGGYEAALVAAQL-G-----ADVTVIERDG   34 (466)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEEccC
Confidence            57899999999999999999998 8     9999999764

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=87.82  E-value=0.79  Score=49.67  Aligned_cols=36  Identities=22%  Similarity=0.345  Sum_probs=31.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      |||+|||+|.-|.+.|..|++. |   ++++|+++.++++
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~-~---~G~~V~vlEr~~~   36 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLL-D---PAHEVTVVERNRP   36 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHh-C---CCCeEEEEecCCC
Confidence            7999999999999999999886 2   1289999999874

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=87.81  E-value=0.71  Score=46.44  Aligned_cols=38  Identities=18%  Similarity=0.309  Sum_probs=28.3

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhh
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA   88 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~   88 (333)
                      +|.|||+|+-|..-|..+++. |     .+|.++.++++.-+++
T Consensus         2 dviIIGgGaAGl~aA~~aa~~-g-----~~V~vlE~~~~~gkKi   39 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEK-G-----ARVLVLERNKRVGKKI   39 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHT-T-------EEEE-SSSSS-HHH
T ss_pred             cEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCcccccce
Confidence            689999999999999999999 8     9999999998765443

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=87.71  E-value=0.75  Score=46.76  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=31.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ++|+|||+|.-|.+.|..|+++ |     ++|.++.++..
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~-G-----~~v~vlE~~~~   35 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKR-G-----YRVTLLEQHAQ   35 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHC-C-----CeEEEEecCCC
Confidence            5799999999999999999999 8     99999988753

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PRK08703 short chain dehydrogenase; Provisional

Probab=87.67  E-value=1.1  Score=40.39  Aligned_cols=37  Identities=16%  Similarity=0.264  Sum_probs=32.7

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ++|.|.|+ |.+|..++..|++. |     ++|.+++|+++..+
T Consensus         7 k~vlItG~sggiG~~la~~l~~~-g-----~~V~~~~r~~~~~~   44 (239)
T PRK08703          7 KTILVTGASQGLGEQVAKAYAAA-G-----ATVILVARHQKKLE   44 (239)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHc-C-----CEEEEEeCChHHHH
Confidence            68999996 99999999999998 8     89999999986543

>PRK07890 short chain dehydrogenase; Provisional

Probab=87.64  E-value=0.82  Score=41.54  Aligned_cols=37  Identities=16%  Similarity=0.220  Sum_probs=32.5

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ++|.|.|+ |.+|.++|..|++. |     ++|.+.+|+++..+
T Consensus         6 k~vlItGa~~~IG~~la~~l~~~-G-----~~V~~~~r~~~~~~   43 (258)
T PRK07890          6 KVVVVSGVGPGLGRTLAVRAARA-G-----ADVVLAARTAERLD   43 (258)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence            68999996 99999999999999 8     89999999876443

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=87.58  E-value=0.95  Score=39.48  Aligned_cols=39  Identities=18%  Similarity=0.250  Sum_probs=31.4

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+.||+|+|+|..|..-+..+..- |     ++|+.++.+++..+
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~l-G-----a~v~~~d~~~~~~~   57 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGL-G-----AEVVVPDERPERLR   57 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHT-T------EEEEEESSHHHHH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHC-C-----CEEEeccCCHHHHH
Confidence            458999999999999999998877 8     99999999876543

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=87.57  E-value=0.83  Score=45.33  Aligned_cols=36  Identities=22%  Similarity=0.249  Sum_probs=32.4

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      .|||.|+|+ |.+|+.++..|.++ |     ++|++++|+.+.
T Consensus        60 ~~kVLVtGatG~IG~~l~~~Ll~~-G-----~~V~~l~R~~~~   96 (390)
T PLN02657         60 DVTVLVVGATGYIGKFVVRELVRR-G-----YNVVAVAREKSG   96 (390)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEEechhh
Confidence            479999997 99999999999999 8     999999998754

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=87.49  E-value=0.95  Score=43.75  Aligned_cols=38  Identities=21%  Similarity=0.179  Sum_probs=32.8

Q ss_pred             CCCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           41 GDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        41 ~~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      +..|||.|.|+ |.+|+.++..|.+. |     ++|++.+|+.+.
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~-G-----~~V~~~~r~~~~   46 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQR-G-----YTVHATLRDPAK   46 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCChHH
Confidence            34589999995 99999999999999 8     899998887653

>PLN02487 zeta-carotene desaturase

Probab=87.48  E-value=0.92  Score=47.57  Aligned_cols=36  Identities=25%  Similarity=0.309  Sum_probs=32.4

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .++||+|||+|.-|.+.|..|++. |     ++|+++.+.+.
T Consensus        74 ~~~~v~iiG~G~~Gl~~a~~L~~~-g-----~~v~i~E~~~~  109 (569)
T PLN02487         74 PKLKVAIIGAGLAGMSTAVELLDQ-G-----HEVDIYESRPF  109 (569)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhC-C-----CeeEEEecCCC
Confidence            457999999999999999999999 8     99999998764

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=87.44  E-value=1.2  Score=40.47  Aligned_cols=37  Identities=19%  Similarity=0.176  Sum_probs=32.9

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +++.|.|+ |.+|..++..|++. |     ++|.+.+|+++..+
T Consensus         8 ~~vlItGasg~iG~~la~~l~~~-G-----~~v~~~~r~~~~~~   45 (262)
T PRK13394          8 KTAVVTGAASGIGKEIALELARA-G-----AAVAIADLNQDGAN   45 (262)
T ss_pred             CEEEEECCCChHHHHHHHHHHHC-C-----CeEEEEeCChHHHH
Confidence            68999998 99999999999999 8     89999999886543

>PRK06949 short chain dehydrogenase; Provisional

Probab=87.39  E-value=0.89  Score=41.30  Aligned_cols=37  Identities=19%  Similarity=0.281  Sum_probs=33.0

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ++|.|.|+ |.+|.+++..|++. |     ++|++.+|+++.++
T Consensus        10 k~ilItGasg~IG~~~a~~l~~~-G-----~~Vi~~~r~~~~~~   47 (258)
T PRK06949         10 KVALVTGASSGLGARFAQVLAQA-G-----AKVVLASRRVERLK   47 (258)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence            78999997 99999999999998 8     89999999886554

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=87.38  E-value=0.86  Score=45.67  Aligned_cols=35  Identities=20%  Similarity=0.279  Sum_probs=31.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +.+|+|+|+|-.|++.|..|.+. |     ++|.+|...++
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~-G-----~~v~VlE~~e~   36 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRK-G-----IDVVVLESRED   36 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHc-C-----CeEEEEeeccc
Confidence            35899999999999999999999 8     99999988664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	333
1wpq_A	349	Ternary Complex Of Glycerol 3-Phosphate Dehydrogena		3e-09
1x0x_A	354	Co-Structure Of Homo Sapiens Glycerol-3-Phosphate D		5e-09
2pla_A	349	Crystal Structure Of Human Glycerol-3-Phosphate Deh		2e-08
1x0v_A	354	Crystal Structure Of Homo Sapien Glycerol-3-Phospha		3e-08
4fgw_A	391	Structure Of Glycerol-3-phosphate Dehydrogenase, Gp		4e-06
1yj8_A	375	Initial Structural Analysis Of Plasmodium Falciparu		3e-05
1evy_A	366	Crystal Structure Of Leishmania Mexicana Glycerol-3		1e-04
1z82_A	335	Crystal Structure Of Glycerol-3-Phosphate Dehydroge		7e-04

>pdb|1WPQ|A Chain A, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1 With Nad And Dihydroxyactone Length = 349

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 10/161 (6%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRI 210
           V ++ +A  DADI+I  +P     ++ +++  + K     P  ISL KGV+     +  I
Sbjct: 76  VPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKAN---PTGISLIKGVDEGPNGLKLI 132
Query: 211 ITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHF 269
              +++I    G+P+  ++   G NIASE+ ++++    I C      + L + ++ P+F
Sbjct: 133 ---SEVIGERLGIPMSVLM---GANIASEVADEKFCETTIGCKDPAQGQLLKELMQTPNF 186
Query: 270 TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 310
            +    ++ T E+ G LKNV A+GAG    L     T  +V
Sbjct: 187 RITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAV 227

>pdb|1X0X|A Chain A, Co-Structure Of Homo Sapiens Glycerol-3-Phosphate Dehydrogenase 1 Complex With Nad Length = 354

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 10/161 (6%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRI 210
           V ++ +A  DADI+I  +P     ++ +++  + K   T    ISL KGV+     +  I
Sbjct: 81  VPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATG---ISLIKGVDEGPNGLKLI 137
Query: 211 ITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHF 269
              +++I    G+P+  ++   G NIASE+ ++++    I C      + L + ++ P+F
Sbjct: 138 ---SEVIGERLGIPMSVLM---GANIASEVADEKFCETTIGCKDPAQGQLLKELMQTPNF 191
Query: 270 TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 310
            +    ++ T E+ G LKNV A+GAG    L     T  +V
Sbjct: 192 RITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAV 232

>pdb|2PLA|A Chain A, Crystal Structure Of Human Glycerol-3-Phosphate Dehydrogenase 1-Like Protein Length = 349

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 18/165 (10%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGVEAELEAVPR 209
           ++NL EAV DAD+++  +P      + +EI+ R  K+ +     I+L KG++   E +  
Sbjct: 78  MSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALG----ITLIKGIDEGPEGLKL 133
Query: 210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPL--AKFLRRP 267
           I   + +I    G+   +I  L G NIA+E+  +++    I G++     L   + L+ P
Sbjct: 134 I---SDIIREKMGI---DISVLMGANIANEVAAEKFCETTI-GSKVMENGLLFKELLQTP 186
Query: 268 HF--TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 310
           +F  TV D+ D V  E+ G LKN+ A+GAG    L     T  +V
Sbjct: 187 NFRITVVDDADTV--ELCGALKNIVAVGAGFCDGLRCGDNTKAAV 229

>pdb|1X0V|A Chain A, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate Dehydrogenase 1 Length = 354

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 10/161 (6%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRI 210
           V ++ +A  DADI+I  +P     ++ +++  + K   T    ISL KGV+     +  I
Sbjct: 81  VPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATG---ISLIKGVDEGPNGLKLI 137
Query: 211 ITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHF 269
              +++I    G+P      L G NIASE+ ++++    I C      + L +  + P+F
Sbjct: 138 ---SEVIGERLGIPXS---VLXGANIASEVADEKFCETTIGCKDPAQGQLLKELXQTPNF 191
Query: 270 TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 310
            +    ++ T E+ G LKNV A+GAG    L     T  +V
Sbjct: 192 RITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAV 232

>pdb|4FGW|A Chain A, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1, From Sacharomyces Cerevisiae Length = 391

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 112/288 (38%), Gaps = 60/288 (20%)
Query: 38  KAEGDPLRIVGVGAGAWGSVFTAML-QDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFE 95
           KA   P ++  +G+G WG+    ++ ++  GY      ++++W       +    E L E
Sbjct: 29  KAAEKPFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFE----EEINGEKLTE 84
Query: 96  VINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQ 155
           +IN+R   ++       YL  +              L D    N++  P        +L 
Sbjct: 85  IINTRHQNVK-------YLPGI-------------TLPD----NLVANP--------DLI 112
Query: 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQ 215
           ++V D DI++  +P      +  ++  +    +     IS  KG E   + V  +   + 
Sbjct: 113 DSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRA---ISCLKGFEVGAKGVQLL---SS 166
Query: 216 MINRATGVPIENILYLGGPNIASEIYNKEYANARIC----------GAEKWRKPLAKFLR 265
            I    G+       L G NIA+E+  + ++   +           G +   K L     
Sbjct: 167 YITEELGI---QCGALSGANIATEVAQEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFH 223
Query: 266 RPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAAL---TNESATSKSV 310
           RP+F V    D+    + G LKNV A+G G V  L    N SA  + V
Sbjct: 224 RPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNASAAIQRV 271

>pdb|1YJ8|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Glycerol-3- Phosphate Dehydrogenase Length = 375

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 120/303 (39%), Gaps = 76/303 (25%)
Query: 38  KAEGDPLRIVGVGAGAWGSVFTAML----QDSYGYLRDKVLIRIWRRPGRSVDRATAEHL 93
           K +  PL+I  +G+G W S  + ++    +++Y +  +   +R+W R     +    E +
Sbjct: 16  KLKDGPLKISILGSGNWASAISKVVGTNAKNNYLFENE---VRMWIRD----EFVNGERM 68
Query: 94  FEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVV-- 151
            ++IN++ +  +       YLK V                          PL P  +V  
Sbjct: 69  VDIINNKHENTK-------YLKGV--------------------------PL-PHNIVAH 94
Query: 152 TNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPV-IISLAKGVEAELEAVPRI 210
           ++L   + DAD++I  +P    + V   I      +I      ISL KG          I
Sbjct: 95  SDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGF---------I 145
Query: 211 ITPTQM------INRATGVPIENILYLGGPNIASEIYNKEYANARICGAEK-----WRKP 259
           +   QM      I+    +P      L G NIA ++  + ++ A I G +K     W++ 
Sbjct: 146 VKKNQMKLCSNYISDFLNIPCS---ALSGANIAMDVAMENFSEATIGGNDKDSLVIWQR- 201
Query: 260 LAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEM 319
                  P+F +    + +  E+ G LKN+  +  G    L N    SKS    +  +EM
Sbjct: 202 ---VFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGL-NLPTNSKSAIIRNGINEM 257
Query: 320 VVM 322
           ++ 
Sbjct: 258 ILF 260

>pdb|1EVY|A Chain A, Crystal Structure Of Leishmania Mexicana Glycerol-3-phosphate Dehydrogenase Length = 366

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 20/158 (12%)
Query: 152 TNLQEAVWDADIVINGLPSTETKEVFEE----ISRYWKERITVPVIISLAKGVEAELEAV 207
           +++++A   A+I++  +P+   +  FE+    +  Y KE+  VPV++   KG+E      
Sbjct: 77  SDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEK-QVPVLVC-TKGIERS---- 130
Query: 208 PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEY-----ANARICGAEKWRKPLAK 262
             +  P ++I      P+ ++L   GP+ A E+    +     A+A I  A + ++ ++ 
Sbjct: 131 -TLKFPAEIIGEFLPSPLLSVL--AGPSFAIEVATGVFTCVSIASADINVARRLQRIMST 187
Query: 263 FLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAAL 300
             R   F  W   D V  EV   +KNV AIG+G+   L
Sbjct: 188 GDR--SFVCWATTDTVGCEVASAVKNVLAIGSGVANGL 223

>pdb|1Z82|A Chain A, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase (Tm0378) From Thermotoga Maritima At 2.00 A Resolution Length = 335

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 152 TNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRII 211
           TN  E +   DI++  +P    +E    +       +    +++L+KG+E  ++   R+ 
Sbjct: 72  TNDLEEIKKEDILVIAIPVQYIREHLLRLP------VKPSXVLNLSKGIE--IKTGKRV- 122
Query: 212 TPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTV 271
             ++++    G P      L GP+ A E+  K      + G     K L K +   +F V
Sbjct: 123 --SEIVEEILGCPY---AVLSGPSHAEEVAKKLPTAVTLAGENS--KELQKRISTEYFRV 175
Query: 272 WDNGDLVTHEVMGGLKNVYAIGAGMV 297
           +   D+V  E+ G LKNV AI AG++
Sbjct: 176 YTCEDVVGVEIAGALKNVIAIAAGIL 201

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	333
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	2e-27
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	5e-25
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	2e-22
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	7e-17
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	4e-16
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	2e-14
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	4e-06
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	7e-06
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	6e-05

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} Length = 375

 Score =  109 bits (275), Expect = 2e-27
 Identities = 54/275 (19%), Positives = 99/275 (36%), Gaps = 53/275 (19%)

Query: 33  RRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIW-RRPGRSVDRA 88
           R L  K +  PL+I  +G+G W S  + ++     +     ++V  R+W R         
Sbjct: 11  RNLFDKLKDGPLKISILGSGNWASAISKVVGTNAKNNYLFENEV--RMWIRDE-----FV 63

Query: 89  TAEHLFEVINS-REDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCP 147
             E + ++IN+  E+            KY    L    L  +                  
Sbjct: 64  NGERMVDIINNKHENT-----------KY----LKGVPLPHN------------------ 90

Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERIT-VPVIISLAKGVEAELEA 206
           +   ++L   + DAD++I  +P    + V   I      +I      ISL KG   +   
Sbjct: 91  IVAHSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQ 150

Query: 207 VPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLR 265
           +      +  I+    +P      L G NIA ++  + ++ A I    +       +   
Sbjct: 151 MKLC---SNYISDFLNIPC---SALSGANIAMDVAMENFSEATIGGNDKDSLVIWQRVFD 204

Query: 266 RPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAAL 300
            P+F +    + +  E+ G LKN+  +  G    L
Sbjct: 205 LPYFKINCVNETIEVEICGALKNIITLACGFCDGL 239

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* Length = 354

 Score =  102 bits (256), Expect = 5e-25
 Identities = 60/262 (22%), Positives = 108/262 (41%), Gaps = 51/262 (19%)

Query: 43  PLRIVGVGAGAWGSVFTAMLQDS-YGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINS- 99
             ++  VG+G WGS    ++  +     +    + +W             + L E+IN+ 
Sbjct: 8   SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEE-----DIGGKKLTEIINTQ 62

Query: 100 REDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW 159
            E+V           KY    L    L  +                  +  V ++ +A  
Sbjct: 63  HENV-----------KY----LPGHKLPPN------------------VVAVPDVVQAAE 89

Query: 160 DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINR 219
           DADI+I  +P     ++ +++  + K        ISL KGV+     +  I   +++I  
Sbjct: 90  DADILIFVVPHQFIGKICDQLKGHLKAN---ATGISLIKGVDEGPNGLKLI---SEVIGE 143

Query: 220 ATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLV 278
             G+P+     L G NIASE+ ++++    I C      + L + ++ P+F +    ++ 
Sbjct: 144 RLGIPM---SVLMGANIASEVADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVD 200

Query: 279 THEVMGGLKNVYAIGAGMVAAL 300
           T E+ G LKNV A+GAG    L
Sbjct: 201 TVEICGALKNVVAVGAGFCDGL 222

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 Length = 335

 Score = 95.3 bits (238), Expect = 2e-22
 Identities = 48/257 (18%), Positives = 89/257 (34%), Gaps = 54/257 (21%)

Query: 45  RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVL 104
            +  +GAGA GS  +  L D+ G    +V  RIW   G   D    +     I++     
Sbjct: 2   IVSILGAGAMGSALSVPLVDN-GN---EV--RIW---GTEFDTEILKS----ISAG---- 44

Query: 105 RRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIV 164
           R   R                               +      +     L++ + +A++V
Sbjct: 45  REHPR---LG--------------------------VKLNGVEIFWPEQLEKCLENAEVV 75

Query: 165 INGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP 224
           + G+ +     V   I  Y K+      I+ ++KG+         ++T  + + R     
Sbjct: 76  LLGVSTDGVLPVMSRILPYLKD----QYIVLISKGLIDFDN---SVLTVPEAVWRLKHDL 128

Query: 225 IENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVM 283
            E  + + GP IA E+  +          +E     + +     +F V    D++  E+ 
Sbjct: 129 RERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVEVTTDIIGTEIT 188

Query: 284 GGLKNVYAIGAGMVAAL 300
             LKNVY+I    +   
Sbjct: 189 SALKNVYSIAIAWIRGY 205

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} Length = 356

 Score = 79.5 bits (197), Expect = 7e-17
 Identities = 53/287 (18%), Positives = 96/287 (33%), Gaps = 62/287 (21%)

Query: 18  IHHTNGSLEERLDELRRLMGKA---EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL 74
           +HH +            L  ++   E     I  +GAG+WG+    +L    G    KV 
Sbjct: 1   MHHHHHHSSGVDLGTENLYFQSNAMEPFKHPIAILGAGSWGTALALVLARK-GQ---KV- 55

Query: 75  IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKD 134
            R+W      VD   AE     +N+R            YL        +           
Sbjct: 56  -RLWSYESDHVDEMQAEG----VNNR------------YLP-------NYPFPET----- 86

Query: 135 GFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVII 194
                        LK   +L+ ++     ++  +PS    EV   +      +     I 
Sbjct: 87  -------------LKAYCDLKASLEGVTDILIVVPSFAFHEVITRMKPLIDAK---TRIA 130

Query: 195 SLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGA 253
              KG+              +++     +    +  + GP++A+E+         +    
Sbjct: 131 WGTKGLAKGSR------LLHEVVATE--LGQVPMAVISGPSLATEVAANLPTAVSLASNN 182

Query: 254 EKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAAL 300
            ++ K L + L    F V+ N D++  E+ G +KN+ AI  G+   L
Sbjct: 183 SQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGL 229

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* Length = 366

 Score = 77.2 bits (191), Expect = 4e-16
 Identities = 46/261 (17%), Positives = 86/261 (32%), Gaps = 59/261 (22%)

Query: 45  RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVL 104
           + V  G+GA+G+    +L         +V   +W      V     +      N      
Sbjct: 17  KAVVFGSGAFGTALAMVLSKK-CR---EV--CVWHMNEEEVRLVNEKR----ENVL---- 62

Query: 105 RRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIV 164
                   +LK          L ++                  +   +++++A   A+I+
Sbjct: 63  --------FLK-------GVQLASN------------------ITFTSDVEKAYNGAEII 89

Query: 165 INGLPSTETKEVFEEISRYWKERITVP--VIISLAKGVEAELEAVPRIITPTQMINRATG 222
           +  +P+   +  FE+               ++   KG+E           P ++I     
Sbjct: 90  LFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLK-----FPAEIIGEF-- 142

Query: 223 VPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFL--RRPHFTVWDNGDLVT 279
           +P   +  L GP+ A E+    +    I        + L + +      F  W   D V 
Sbjct: 143 LPSPLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRSFVCWATTDTVG 202

Query: 280 HEVMGGLKNVYAIGAGMVAAL 300
            EV   +KNV AIG+G+   L
Sbjct: 203 CEVASAVKNVLAIGSGVANGL 223

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} Length = 335

 Score = 72.1 bits (178), Expect = 2e-14
 Identities = 54/263 (20%), Positives = 103/263 (39%), Gaps = 77/263 (29%)

Query: 43  PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSRED 102
            +R   +GAG+WG+VF  ML ++ G    +V   +W R          E + ++IN    
Sbjct: 14  EMRFFVLGAGSWGTVFAQMLHEN-GE---EV--ILWAR--------RKEIV-DLINVS-- 56

Query: 103 VLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDAD 162
                     Y++                          ++ +  ++   +L E +   D
Sbjct: 57  ------HTSPYVE--------------------------ESKI-TVRATNDL-EEIKKED 82

Query: 163 IVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATG 222
           I++  +P    +E    +       +   ++++L+KG+E +          ++++    G
Sbjct: 83  ILVIAIPVQYIREHLLRL------PVKPSMVLNLSKGIEIKTGK-----RVSEIVEEILG 131

Query: 223 VPIENILYLGGPNIASEIYNKEYANAR-----ICGAEKWRKPLAKFLRRPHFTVWDNGDL 277
            P      L GP+ A E+       A+     +  A +  K L K +   +F V+   D+
Sbjct: 132 CPY---AVLSGPSHAEEV-------AKKLPTAVTLAGENSKELQKRISTEYFRVYTCEDV 181

Query: 278 VTHEVMGGLKNVYAIGAGMVAAL 300
           V  E+ G LKNV AI AG++   
Sbjct: 182 VGVEIAGALKNVIAIAAGILDGF 204

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Length = 404

 Score = 46.8 bits (110), Expect = 4e-06
 Identities = 30/235 (12%), Positives = 68/235 (28%), Gaps = 42/235 (17%)

Query: 44  LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103
           +++   G G      + +     G    +V  R+        +R                
Sbjct: 3   VKVCVCGGGNGAHTLSGLAASRDGV---EV--RVLTLFADEAER---------------- 41

Query: 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADI 163
             + +        V  + G +                 +    P  +  + + A+  AD+
Sbjct: 42  WTKALGADELTVIVNEKDGTQ----------------TEVKSRPKVITKDPEIAISGADV 85

Query: 164 VINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGV 223
           VI  +P+   +  F+ ++ Y ++   + V +    G E +   +         +     +
Sbjct: 86  VILTVPAFAHEGYFQAMAPYVQDSALI-VGLPSQAGFEFQCRDILGDKAAAVSMMSFETL 144

Query: 224 PIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLR----RPHFTVWDN 274
           P    +   G  +         A + I G  K   PL+         P F +  +
Sbjct: 145 PWACRIKEFGRKVEVLGTKSVLAASLIKGTAKTVDPLSTLQMLHGAEPVFRLAKH 199

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 Length = 359

 Score = 46.2 bits (109), Expect = 7e-06
 Identities = 35/269 (13%), Positives = 65/269 (24%), Gaps = 54/269 (20%)

Query: 45  RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVL 104
               +G G  G  F A L    G     V    W    + +                   
Sbjct: 6   TYAVLGLGNGGHAFAAYLALK-GQ---SV--LAWDIDAQRIKEIQDRGAIIA-------- 51

Query: 105 RRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIV 164
                       +                             P  + +++  AV DAD++
Sbjct: 52  --------EGPGLA------------------------GTAHPDLLTSDIGLAVKDADVI 79

Query: 165 INGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP 224
           +  +P+     +   I+ Y  E   + +      G     + +     P   I   + + 
Sbjct: 80  LIVVPAIHHASIAANIASYISEGQLIILNPGATGGALEFRKILRENGAPEVTIGETSSML 139

Query: 225 IENILYLGGPNIASEIYNKEYANARICG-----AEKWRKPLAKFLRRPHF--TVWDNGDL 277
                   G    + I                  E+    L +++   +   T   N + 
Sbjct: 140 FTCRSERPGQVTVNAIKGAMDFACLPAAKAGWALEQIGSVLPQYVAVENVLHTSLTNVNA 199

Query: 278 VTHEVMGGLKNVYAIGAGMVAALTNESAT 306
           V H  +  L N     +G       E  T
Sbjct: 200 VMH-PLPTLLNAARCESGTPFQYYLEGIT 227

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* Length = 358

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 148 LKVVTNLQEAVWDADIVINGLP-STETKEVFEEISRYWKERITVPVIISLAKGVEAELEA 206
           LKV ++ +EAV  ADIVI  LP   +  ++ ++ +    E   V    ++     A++  
Sbjct: 129 LKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFK 188

Query: 207 VPRIITPTQMINRATGVP-IENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLR 265
                           VP ++  +Y+     + E  NK Y   +I   + ++ P      
Sbjct: 189 DLGREDLNITSYHPGCVPEMKGQVYIAEGYASEEAVNKLYEIGKIARGKAFKMPANL--- 245

Query: 266 RPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAA 299
                V D    VT  V  GL         ++ A
Sbjct: 246 --IGPVCDMCSAVTATVYAGLLAYRDAVTKILGA 277

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	333
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	100.0
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	100.0
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	99.97
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	99.96
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	99.96
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	99.96
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	99.94
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	99.93
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	99.93
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	99.92
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	99.91
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	99.9
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	99.88
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	99.84
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	99.83
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	99.83
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	99.83
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	99.83
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	99.81
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.79
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	99.74
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.73
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	99.7
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.7
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	99.7
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	99.68
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.68
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.66
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.65
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	99.65
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.65
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.65
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	99.65
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	99.64
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	99.63
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.63
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.63
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.62
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.61
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.61
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.61
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.61
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.61
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.61
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.6
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.6
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.59
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.59
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.59
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.58
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.58
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	99.58
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	99.58
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.58
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.57
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.56
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.55
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.54
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	99.53
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.52
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.48
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	99.48
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.47
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.47
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	99.46
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.46
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.46
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	99.42
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.42
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.42
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.41
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.4
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.39
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.38
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.38
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.36
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.34
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	99.01
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	99.31
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.29
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.28
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.22
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.16
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.14
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.14
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.14
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.09
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.05
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	98.96
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	98.95
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	98.94
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	98.9
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	98.85
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	98.84
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	98.79
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	98.71
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.69
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	98.69
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	98.67
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	98.63
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	98.61
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	98.59
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	98.55
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	98.51
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	98.51
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	98.48
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.48
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.48
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	98.48
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	98.46
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	98.46
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	98.42
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	98.4
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.39
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	98.38
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	98.36
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	98.36
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	98.36
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.35
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.33
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.28
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.25
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	98.24
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.24
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.23
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	98.23
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	98.22
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.22
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	98.2
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.18
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	98.18
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	98.17
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	98.17
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	98.15
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	98.15
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	98.14
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	98.14
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	98.13
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	98.12
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.12
3tl2_A	315	Malate dehydrogenase; center for structural genomi	98.12
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	98.12
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	98.11
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	98.11
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.1
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	98.1
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.09
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	98.08
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	98.07
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	98.07
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	98.06
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.06
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	98.05
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.05
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.04
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	98.02
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	98.02
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	98.01
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.0
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.99
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	97.99
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	97.97
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.97
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.96
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	97.96
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	97.96
2duw_A	145	Putative COA-binding protein; ligand binding prote	97.95
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	97.93
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	97.91
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	97.91
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.9
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	97.9
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	97.9
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	97.89
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	97.87
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	97.87
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.87
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	97.86
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.85
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	97.85
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.85
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.84
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.84
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.83
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	97.82
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	97.81
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	97.8
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	97.79
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.79
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	97.79
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.78
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	97.76
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.75
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.75
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.74
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	97.74
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.72
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	97.68
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.68
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.67
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.66
1ydw_A	362	AX110P-like protein; structural genomics, protein	97.65
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.64
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	97.64
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	97.64
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	97.64
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	97.62
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	97.61
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.6
4had_A	350	Probable oxidoreductase protein; structural genomi	97.6
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.57
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	97.56
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	97.55
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	97.55
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	97.52
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.5
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.49
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.49
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.49
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	97.48
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	97.46
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	97.45
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	97.45
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	97.43
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	97.41
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	97.41
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.41
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	97.4
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	97.36
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	97.36
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.36
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.35
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	97.35
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.32
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	97.31
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	97.28
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.27
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	97.26
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.25
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.24
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.24
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	97.22
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.22
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	97.2
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	97.16
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	97.15
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	97.14
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.12
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	97.1
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	97.1
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	97.09
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	97.09
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.08
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	97.08
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	97.07
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	97.06
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	97.04
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	97.03
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.0
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	96.99
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	96.99
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	96.96
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	96.95
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.95
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	96.94
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	96.94
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	96.93
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	96.91
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.91
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	96.9
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.88
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	96.88
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	96.88
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.88
4h3v_A	390	Oxidoreductase domain protein; structural genomics	96.83
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	96.78
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	96.77
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.77
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.75
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	96.71
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.7
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.69
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	96.65
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	96.64
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	96.61
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	96.52
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.52
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.52
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	96.49
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	96.45
1lnq_A	336	MTHK channels, potassium channel related protein;	96.42
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	96.38
4hb9_A	412	Similarities with probable monooxygenase; flavin,	96.38
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.36
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.33
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.27
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.26
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	96.26
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.26
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	96.24
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.14
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.13
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.12
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.1
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.09
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.08
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.07
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.03
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.03
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.01
3h2z_A	382	Mannitol-1-phosphate 5-dehydrogenase; PSI- protein	95.98
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	95.97
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	95.94
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	95.91
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.86
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	95.83
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	95.82
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	95.82
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	95.81
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	95.72
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	95.64
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.59
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	95.59
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	95.54
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.52
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	95.5
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.47
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	95.45
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	95.42
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	95.41
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	95.3
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.29
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.26
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.26
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.16
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	95.11
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	95.1
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.09
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	95.08
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	95.08
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	95.07
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	95.04
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.04
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.99
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	94.98
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	94.94
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	94.9
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	94.89
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	94.88
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	94.85
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	94.7
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	94.7
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	94.67
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	94.67
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	94.66
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	94.65
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	94.57
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	94.55
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	94.52
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	94.51
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	94.45
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.44
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	94.44
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	94.44
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	94.43
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	94.39
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	94.39
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	94.37
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	94.34
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	94.34
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	94.32
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	94.31
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	94.31
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	94.29
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	94.28
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	94.26
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	94.22
2csu_A	457	457AA long hypothetical protein; structural genomi	94.11
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	94.07
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	94.07
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	93.92
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	93.82
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	93.82
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	93.81
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	93.77
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	93.73
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	93.69
3dme_A	369	Conserved exported protein; structural genomics, P	93.68
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	93.68
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	93.65
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	93.52
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	93.51
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	93.5
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	93.41
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	93.38
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	93.33
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	93.31
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	93.31
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	93.12
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	93.1
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	93.08
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	93.04
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	93.03
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	93.03
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	93.03
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	92.96
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	92.95
3r9u_A	315	Thioredoxin reductase; structural genomics, center	92.95
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	92.88
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	92.87
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	92.84
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	92.79
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	92.76
2bry_A	497	NEDD9 interacting protein with calponin homology a	92.73
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	92.72
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	92.71
3l07_A	285	Bifunctional protein fold; structural genomics, ID	92.71
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	92.68
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	92.66
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	92.65
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	92.61
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	92.6
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	92.59
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	92.59
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	92.53
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	92.52
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	92.51
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	92.48
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	92.39
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	92.39
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	92.34
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	92.32
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	92.24
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	92.23
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	92.2
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	92.16
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	92.16
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	92.16
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	92.12
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	92.09
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	92.08
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	91.99
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	91.98
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	91.98
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	91.97
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	91.97
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	91.97
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	91.94
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	91.94
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	91.9
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	91.88
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	91.87
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	91.85
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	91.6
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	91.6
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	91.6
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	91.59
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	91.57
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	91.5
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	91.4
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	91.39
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	91.39
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	91.36
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	91.23
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	91.17
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	91.13
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	91.05
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	90.99
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	90.97
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	90.97
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.97
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	90.96
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	90.92
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	90.89
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	90.86
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	90.84
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	90.83
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	90.83
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	90.81
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	90.76
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.72
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	90.67
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	90.65
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	90.64
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	90.64
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	90.64
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	90.55
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	90.55
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	90.54
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	90.52
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	90.49
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	90.43
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	90.41
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	90.39
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	90.38
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	90.37
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	90.3
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	90.28
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	90.27
3rih_A	293	Short chain dehydrogenase or reductase; structural	90.27

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-46  Score=365.55  Aligned_cols=261  Identities=23%  Similarity=0.340  Sum_probs=201.7

Q ss_pred             ccccccchHHhhhHHHHhhc-cCCCCCceEEEECCCHHHHHHHHHHHHhcCC---CCCCeeEEEEecCCcchhhhhhhhH
Q 019978           18 IHHTNGSLEERLDELRRLMG-KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGY---LRDKVLIRIWRRPGRSVDRATAEHL   93 (333)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~kI~IIGaG~mG~alA~~La~~~G~---~~~~~~V~l~~r~~~~~~~~~~~~l   93 (333)
                      +.||++.++-+-+....-.. .+...+.||+|||+|+||++||..|+++ |.   ....++|++|.|+++...    +.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~KI~ViGaGsWGTALA~~la~n-g~~~~~~~~~~V~lw~r~~e~~~----~~~   82 (391)
T 4fgw_A            8 LNLTSGHLNAGRKRSSSSVSLKAAEKPFKVTVIGSGNWGTTIAKVVAEN-CKGYPEVFAPIVQMWVFEEEING----EKL   82 (391)
T ss_dssp             -------------------------CCEEEEEECCSHHHHHHHHHHHHH-HHHCTTTEEEEEEEECCCCBSSS----CBH
T ss_pred             HHHHhhhhccccccccccccccccCCCCeEEEECcCHHHHHHHHHHHHc-CCCccccCCceEEEEEcchHhhh----HHH
Confidence            45566666544332222222 2233467999999999999999999998 61   000025999999987533    233


Q ss_pred             HHHHhhhhhHHHHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhH
Q 019978           94 FEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTET  173 (333)
Q Consensus        94 ~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~  173 (333)
                      .+.|+..+       +|++|+|++       +||                  .++.+++|++++++++|+||++||++++
T Consensus        83 ~e~in~~~-------~N~~YLpgv-------~Lp------------------~~i~~t~dl~~al~~ad~ii~avPs~~~  130 (391)
T 4fgw_A           83 TEIINTRH-------QNVKYLPGI-------TLP------------------DNLVANPDLIDSVKDVDIIVFNIPHQFL  130 (391)
T ss_dssp             HHHHTTTC-------CBTTTBTTC-------CCC------------------SSEEEESCHHHHHTTCSEEEECSCGGGH
T ss_pred             HHHHHhcC-------cCcccCCCC-------cCC------------------CCcEEeCCHHHHHhcCCEEEEECChhhh
Confidence            44566554       589999875       454                  2799999999999999999999999999


Q ss_pred             HHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEe-C
Q 019978          174 KEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-G  252 (333)
Q Consensus       174 ~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~-~  252 (333)
                      +++++++++++++   ++++|+++||++..+   +..+++++++.+.++.   ++++++||+||.|++++.|+.++++ .
T Consensus       131 r~~l~~l~~~~~~---~~~iv~~~KGie~~~---~~~~~~se~i~e~~~~---~~~vLsGPs~A~EVa~~~pta~~iA~~  201 (391)
T 4fgw_A          131 PRICSQLKGHVDS---HVRAISCLKGFEVGA---KGVQLLSSYITEELGI---QCGALSGANIATEVAQEHWSETTVAYH  201 (391)
T ss_dssp             HHHHHHHTTTSCT---TCEEEECCCSCEEET---TEEECHHHHHHHHHCC---EEEEEECSCCHHHHHTTCCEEEEEECC
T ss_pred             HHHHHHhccccCC---CceeEEecccccccc---ccchhHHHHHHHHhCc---cceeccCCchHHHhhcCCCceEEEEec
Confidence            9999999999987   789999999998753   1347899999998873   5889999999999999999887653 2


Q ss_pred             C---------hhhHHHHHHHhCCCCeEEEecCChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-
Q 019978          253 A---------EKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-  322 (333)
Q Consensus       253 ~---------~~~~~~l~~ll~~~~~~v~~s~Di~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-  322 (333)
                      +         +...+.++++|++++|++|.++|++|+|+||+|||||||++||++|+++ |+|++++|++|+++||..+ 
T Consensus       202 ~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgGAlKNViAIAaGi~dGlg~-G~NakAALitrGl~Em~rlg  280 (391)
T 4fgw_A          202 IPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGW-GNNASAAIQRVGLGEIIRFG  280 (391)
T ss_dssp             CCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHHHH
Confidence            2         1247889999999999999999999999999999999999999999999 7999999999999999999 


Q ss_pred             HHC
Q 019978          323 HGM  325 (333)
Q Consensus       323 ~~~  325 (333)
                      .+|
T Consensus       281 ~al  283 (391)
T 4fgw_A          281 QMF  283 (391)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            888

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=100.00  E-value=2.2e-39  Score=314.81  Aligned_cols=230  Identities=21%  Similarity=0.335  Sum_probs=203.1

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .+|||+|||+|+||+++|..|+++ |     ++|++|+|+++++++++.++                .|+.|+++.    
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~-G-----~~V~l~~r~~~~~~~i~~~~----------------~~~~~l~g~----   81 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARK-G-----QKVRLWSYESDHVDEMQAEG----------------VNNRYLPNY----   81 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSCHHHHHHHHHHS----------------SBTTTBTTC----
T ss_pred             cCCeEEEECccHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHHcC----------------CCcccCCCC----
Confidence            358999999999999999999999 8     99999999988766543322                355676653    


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                         .++                  .++.+++|++++++++|+||++||+++++++++++.+++++   +++||+++||++
T Consensus        82 ---~l~------------------~~i~~t~d~~ea~~~aDvVilaVp~~~~~~vl~~i~~~l~~---~~ivvs~~kGi~  137 (356)
T 3k96_A           82 ---PFP------------------ETLKAYCDLKASLEGVTDILIVVPSFAFHEVITRMKPLIDA---KTRIAWGTKGLA  137 (356)
T ss_dssp             ---CCC------------------TTEEEESCHHHHHTTCCEEEECCCHHHHHHHHHHHGGGCCT---TCEEEECCCSCB
T ss_pred             ---ccC------------------CCeEEECCHHHHHhcCCEEEECCCHHHHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence               232                  26888999999999999999999999999999999999987   789999999999


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCChhHH
Q 019978          202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH  280 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di~gv  280 (333)
                      ++     + .++++++++.+|.  .++++++||+++.++..+.++.+++ +.+++..+.++++|++.+|+++.++|++|+
T Consensus       138 ~~-----t-~~~se~i~~~l~~--~~~~vlsgP~~a~ev~~g~pt~~via~~~~~~~~~v~~lf~~~~~rv~~~~Di~g~  209 (356)
T 3k96_A          138 KG-----S-RLLHEVVATELGQ--VPMAVISGPSLATEVAANLPTAVSLASNNSQFSKDLIERLHGQRFRVYKNDDMIGV  209 (356)
T ss_dssp             TT-----T-BCHHHHHHHHHCS--CCEEEEESSCCHHHHHTTCCEEEEEEESCHHHHHHHHHHHCCSSEEEEEESCHHHH
T ss_pred             cC-----c-cCHHHHHHHHcCC--CCEEEEECccHHHHHHcCCCeEEEEecCCHHHHHHHHHHhCCCCeeEEEeCCHHHH
Confidence            86     5 7899999999973  4588999999999999999887655 667788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCCC
Q 019978          281 EVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSWQ  330 (333)
Q Consensus       281 e~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~~  330 (333)
                      ||+|++|||+|+++|+++|+++ ++|+++++++++++||..+ +++|++.+
T Consensus       210 e~~galkNviaia~G~~~gl~~-g~N~~aal~~~~l~E~~~l~~a~G~~~~  259 (356)
T 3k96_A          210 ELCGSVKNILAIATGISDGLKL-GSNARAALITRGLTEMGRLVSVFGGKQE  259 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhccC-CchHHHHHHHHHHHHHHHHHHHhCCChH
Confidence            9999999999999999999999 7999999999999999999 99998753

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=99.97  E-value=2.2e-30  Score=251.81  Aligned_cols=235  Identities=23%  Similarity=0.303  Sum_probs=189.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCC--CeeEEEEecCCc-----chhhhhhhhHHHHHhhhhhHHHHhhhcccccc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRD--KVLIRIWRRPGR-----SVDRATAEHLFEVINSREDVLRRLIRRCAYLK  115 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~--~~~V~l~~r~~~-----~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~  115 (333)
                      +|||+|||+|+||+++|..|+++ |...+  .++|++|+|+++     +++.++.++                .+..|++
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~-G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~----------------~~~~~~~   83 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTN-AKNNYLFENEVRMWIRDEFVNGERMVDIINNKH----------------ENTKYLK   83 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHH-HHHCTTBCSCEEEECCSCC---CCHHHHHHHHC----------------BCTTTST
T ss_pred             CCEEEEECcCHHHHHHHHHHHHc-CCccCCCCCeEEEEECChhhhhHHHHHHHHhcC----------------cccccCC
Confidence            47999999999999999999988 51000  068999999987     544332211                1233443


Q ss_pred             hhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHh----hhhccCCCC
Q 019978          116 YVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR----YWKERITVP  191 (333)
Q Consensus       116 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~----~l~~~~~~~  191 (333)
                      +.       .++                  .++.+++|++++++++|+||++||+++++++++++.+    ++++   ++
T Consensus        84 ~~-------~~~------------------~~i~~~~~~~ea~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~---~~  135 (375)
T 1yj8_A           84 GV-------PLP------------------HNIVAHSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIAS---HA  135 (375)
T ss_dssp             TC-------BCC------------------TTEEEESSTHHHHTTCSEEEECCCHHHHHHHHHHHTC---CCCCT---TC
T ss_pred             cc-------cCc------------------CCeEEECCHHHHHcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCC---CC
Confidence            31       111                  2577888988888999999999999999999999998    8876   78


Q ss_pred             EEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeE
Q 019978          192 VIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFT  270 (333)
Q Consensus       192 ~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~  270 (333)
                      +||+++||+.+..   .+...+++++.+.++   .+..++.||+++.++..+.++.+.. +.+++..+.++++|+..+++
T Consensus       136 ivvs~~~Gi~~~~---~~~~~l~~~l~~~~~---~~~~v~~gp~~a~~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~  209 (375)
T 1yj8_A          136 KAISLTKGFIVKK---NQMKLCSNYISDFLN---IPCSALSGANIAMDVAMENFSEATIGGNDKDSLVIWQRVFDLPYFK  209 (375)
T ss_dssp             EEEECCCSCEEET---TEEECHHHHHHHHSS---SCEEEEECSCCHHHHHTTCCEEEEEECSCHHHHHHHHHHHCBTTEE
T ss_pred             EEEEeCCccccCC---ccccCHHHHHHHHcC---CCEEEEeCCchHHHHHhCCCeEEEEecCCHHHHHHHHHHhCCCCeE
Confidence            9999999998730   024678888887765   3467899999999999888776555 45667889999999999999


Q ss_pred             EEecCChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCC--CCC
Q 019978          271 VWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMG--RSW  329 (333)
Q Consensus       271 v~~s~Di~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G--~~~  329 (333)
                      ++.++|+.+++|++++||++++++|+++++++ ++|...+++.+++.|+..+ +++|  .+.
T Consensus       210 ~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~-~~n~~~a~~~~~~~E~~~la~a~G~G~~~  270 (375)
T 1yj8_A          210 INCVNETIEVEICGALKNIITLACGFCDGLNL-PTNSKSAIIRNGINEMILFGKVFFQKFNE  270 (375)
T ss_dssp             EEEESCSHHHHHHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHSSCCCG
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHHHHHHhhccC-ChhHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence            99999999999999999999999999999998 5788889999999999999 8994  654

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=99.96  E-value=2e-28  Score=235.12  Aligned_cols=233  Identities=24%  Similarity=0.343  Sum_probs=186.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCC--CeeEEEEecCCc-----chhhhhhhhHHHHHhhhhhHHHHhhhcccccc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRD--KVLIRIWRRPGR-----SVDRATAEHLFEVINSREDVLRRLIRRCAYLK  115 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~--~~~V~l~~r~~~-----~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~  115 (333)
                      +|||+|||+|+||+++|..|+++ |...+  +++|++|+|+++     +++.++..+                .+..+++
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~-g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~----------------~~~~~~~   70 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGN-AAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQH----------------ENVKYLP   70 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHH-HHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHS----------------CCTTTST
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc-CCcccCCCCeEEEEEcChhhhhhHHHHHHHhcC----------------cccccCC
Confidence            47999999999999999999988 41000  068999999987     443322111                1122222


Q ss_pred             hhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEE
Q 019978          116 YVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIIS  195 (333)
Q Consensus       116 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs  195 (333)
                      +.       .++                  .++.++++++++++++|+||+|||++.++++++++.+++++   +++||+
T Consensus        71 ~~-------~~~------------------~~~~~~~~~~~~~~~aD~Vilav~~~~~~~v~~~i~~~l~~---~~ivv~  122 (354)
T 1x0v_A           71 GH-------KLP------------------PNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKA---NATGIS  122 (354)
T ss_dssp             TC-------CCC------------------TTEEEESSHHHHHTTCSEEEECCCGGGHHHHHHHHTTCSCT---TCEEEE
T ss_pred             cc-------cCc------------------cCeEEEcCHHHHHcCCCEEEEeCCHHHHHHHHHHHHhhCCC---CCEEEE
Confidence            21       111                  25777889988889999999999999999999999998876   789999


Q ss_pred             eeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEec
Q 019978          196 LAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDN  274 (333)
Q Consensus       196 ~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s  274 (333)
                      ++||+..+.   .+...+++.+.+.+|   .+..++.||+++.++..+.++.++. +.+++..+.++++|+..+++++.+
T Consensus       123 ~~~Gi~~~~---~~~~~l~~~l~~~~~---~~~~v~~gp~~a~~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~  196 (354)
T 1x0v_A          123 LIKGVDEGP---NGLKLISEVIGERLG---IPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVV  196 (354)
T ss_dssp             CCCCBCSSS---SSCCBHHHHHHHHHT---CCEEEEECSCCHHHHHTTCCEEEEEECSSHHHHHHHHHHHCBTTEEEEEE
T ss_pred             ECCccCCCC---CccccHHHHHHHHcC---CCEEEEECCCcHHHHHhcCCceEEEEECCHHHHHHHHHHhCCCCEEEEEc
Confidence            999998520   134677788887776   3467899999999998887765544 455678899999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCC
Q 019978          275 GDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGR  327 (333)
Q Consensus       275 ~Di~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~  327 (333)
                      +|+.+++|++++||++++++|++.++++ ++|...+++.++++|+..+ +++|.
T Consensus       197 ~di~~~~~~k~~~N~~~~~~g~~~~~~~-~~n~~~~~~~~~~~E~~~la~a~G~  249 (354)
T 1x0v_A          197 QEVDTVEICGALKNVVAVGAGFCDGLGF-GDNTKAAVIRLGLMEMIAFAKLFCS  249 (354)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCchHhHHHHHHHHHHHHHHHHHHHccC-CccHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999998 5788889999999999999 89987

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=99.96  E-value=1.1e-28  Score=236.30  Aligned_cols=219  Identities=25%  Similarity=0.432  Sum_probs=181.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +|||+|||+|+||+++|..|+++ |     ++|++|+|++++++.++.++                .+. ++++.     
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~-G-----~~V~~~~r~~~~~~~l~~~g----------------~~~-~~~~~-----   65 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHEN-G-----EEVILWARRKEIVDLINVSH----------------TSP-YVEES-----   65 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSHHHHHHHHHHS----------------CBT-TBTTC-----
T ss_pred             CCcEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHHhC----------------Ccc-cCCCC-----
Confidence            48999999999999999999999 8     99999999987766543221                112 33321     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                        .                   . ++.+++++++ ++++|+||++||+++++++++++.+   +   +++||+++||+.+
T Consensus        66 --~-------------------~-~~~~~~~~~~-~~~aDvVil~vk~~~~~~v~~~l~~---~---~~~vv~~~nGi~~  116 (335)
T 1z82_A           66 --K-------------------I-TVRATNDLEE-IKKEDILVIAIPVQYIREHLLRLPV---K---PSMVLNLSKGIEI  116 (335)
T ss_dssp             --C-------------------C-CSEEESCGGG-CCTTEEEEECSCGGGHHHHHTTCSS---C---CSEEEECCCCCCT
T ss_pred             --e-------------------e-eEEEeCCHHH-hcCCCEEEEECCHHHHHHHHHHhCc---C---CCEEEEEeCCCCC
Confidence              0                   0 3667788888 8899999999999999999988776   4   6899999999998


Q ss_pred             cccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCChhHHHH
Q 019978          203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEV  282 (333)
Q Consensus       203 ~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di~gve~  282 (333)
                      +     +.+.+++++.+.++   ....++.||+++.++..+.++.+..++.+  .+.++++|+..+++++.++|+.+++|
T Consensus       117 ~-----~~~~l~~~~~~~~~---~~~~~~~~P~~~~~~~~g~~~~~~~g~~~--~~~~~~ll~~~g~~~~~~~di~~~~~  186 (335)
T 1z82_A          117 K-----TGKRVSEIVEEILG---CPYAVLSGPSHAEEVAKKLPTAVTLAGEN--SKELQKRISTEYFRVYTCEDVVGVEI  186 (335)
T ss_dssp             T-----TCCCHHHHHHHHTC---CCEEEEESSCCHHHHHTTCCEEEEEEETT--HHHHHHHHCCSSEEEEEESCHHHHHH
T ss_pred             C-----ccCcHHHHHHHHcC---CceEEEECCccHHHHhCCCceEEEEEehh--HHHHHHHhCCCCEEEEecCchHHHHH
Confidence            6     34678888877665   34678999999999988877654444333  78999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCC
Q 019978          283 MGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSW  329 (333)
Q Consensus       283 ~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~  329 (333)
                      ++++||++++++|++.++++ ++|...+++..++.|+..+ +++|.+.
T Consensus       187 ~k~l~N~~~~~~g~~~g~~~-~~n~~~a~~~~~~~E~~~la~a~G~~~  233 (335)
T 1z82_A          187 AGALKNVIAIAAGILDGFGG-WDNAKAALETRGIYEIARFGMFFGADQ  233 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHhHHHHHHHHHhcCCC-CchhHHHHHHHHHHHHHHHHHHhCCCh
Confidence            99999999999999999988 5888889999999999999 9999875

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=99.96  E-value=2.1e-27  Score=229.49  Aligned_cols=229  Identities=21%  Similarity=0.366  Sum_probs=187.8

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR  124 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~  124 (333)
                      ||+|||+|+||+++|..|+++ |     ++|++|+|+++++++++..+                .+..++++.       
T Consensus        17 kI~iIG~G~mG~~la~~L~~~-G-----~~V~~~~r~~~~~~~l~~~~----------------~~~~~~~~~-------   67 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKK-C-----REVCVWHMNEEEVRLVNEKR----------------ENVLFLKGV-------   67 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT-E-----EEEEEECSCHHHHHHHHHHT----------------BCTTTSTTC-------
T ss_pred             eEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHHcC----------------ccccccccc-------
Confidence            999999999999999999998 8     99999999987765443211                122233221       


Q ss_pred             cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHH----HHhhhhccCCCCEEEEeeecC
Q 019978          125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEE----ISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~----i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                      .++                  .++.++++++++++++|+||+|||++.+++++++    +.+++++.  +++||+++||+
T Consensus        68 ~~~------------------~~~~~~~~~~~~~~~aDvVilav~~~~~~~v~~~~~~gl~~~l~~~--~~ivv~~~~gi  127 (366)
T 1evy_A           68 QLA------------------SNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEK--QVPVLVCTKGI  127 (366)
T ss_dssp             BCC------------------TTEEEESCHHHHHTTCSSEEECCCHHHHHHHHHHHCHHHHHHHHHH--TCCEEECCCSC
T ss_pred             ccc------------------cceeeeCCHHHHHcCCCEEEECCChHHHHHHHHHhHHHHHHhcCcc--CCEEEEECCcC
Confidence            111                  1577888998888999999999999999999999    99888640  36889999999


Q ss_pred             cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCC--CeEEEecCCh
Q 019978          201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRP--HFTVWDNGDL  277 (333)
Q Consensus       201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~--~~~v~~s~Di  277 (333)
                      .++     +.+.+++.+.+.+|.  .+..++.||+++.++..+.++.+.. +.+++..+.++.+|+..  +++++.++|+
T Consensus       128 ~~~-----~~~~~~~~l~~~~~~--~~~~v~~gp~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~g~~~~~~~di  200 (366)
T 1evy_A          128 ERS-----TLKFPAEIIGEFLPS--PLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRSFVCWATTDT  200 (366)
T ss_dssp             CTT-----TCCCHHHHHTTTSCG--GGEEEEESSCCHHHHHTTCCEEEEEECSSHHHHHHHHHHHSCTTSSEEEEEESCH
T ss_pred             CCc-----cccCHHHHHHHHCCC--CcEEEEeCCChHHHHHhCCceEEEEecCCHHHHHHHHHHhcCCCCeEEEEEcCCc
Confidence            886     346777888776653  3567899999999988887765554 45667889999999999  9999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCCC
Q 019978          278 VTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSWQ  330 (333)
Q Consensus       278 ~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~~  330 (333)
                      .+++|++++||++++++|++.++++ ++|...+++..++.|+..+ +++|.+..
T Consensus       201 ~~~~~~k~~~n~~~~~~~~~~~~~~-~~n~~~~~~~~~~~E~~~la~a~Gi~~~  253 (366)
T 1evy_A          201 VGCEVASAVKNVLAIGSGVANGLGM-GLNARAALIMRGLLEIRDLTAALGGDGS  253 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred             hHHHHHHHHHhHHHHHHHHHhhccC-CccHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            9999999999999999999999998 5888889999999999999 99999764

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=99.94  E-value=3.6e-27  Score=224.83  Aligned_cols=221  Identities=16%  Similarity=0.149  Sum_probs=172.6

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .+|||+|||+|+||+++|..|+++ |     ++|++| ++++++++++.+++                +.. .++.    
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~-G-----~~V~l~-~~~~~~~~i~~~g~----------------~~~-~~~~----   69 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARA-G-----HEVILI-ARPQHVQAIEATGL----------------RLE-TQSF----   69 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHT-T-----CEEEEE-CCHHHHHHHHHHCE----------------EEE-CSSC----
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHC-C-----CeEEEE-EcHhHHHHHHhCCe----------------EEE-cCCC----
Confidence            358999999999999999999999 8     999999 88777665443221                110 1110    


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                         .++                  .++.+++++++ +.++|+||+|||+++++++++++++++++   +++||+++||++
T Consensus        70 ---~~~------------------~~~~~~~~~~~-~~~~D~vilavk~~~~~~~l~~l~~~l~~---~~~iv~~~nGi~  124 (318)
T 3hwr_A           70 ---DEQ------------------VKVSASSDPSA-VQGADLVLFCVKSTDTQSAALAMKPALAK---SALVLSLQNGVE  124 (318)
T ss_dssp             ---EEE------------------ECCEEESCGGG-GTTCSEEEECCCGGGHHHHHHHHTTTSCT---TCEEEEECSSSS
T ss_pred             ---cEE------------------EeeeeeCCHHH-cCCCCEEEEEcccccHHHHHHHHHHhcCC---CCEEEEeCCCCC
Confidence               111                  15667788765 68999999999999999999999999987   789999999999


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCC------CcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecC
Q 019978          202 AELEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG  275 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~------~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~  275 (333)
                      ..           +.+.+.+| ..      ...+++.||+++.++..+.++   ++. .+..+.++++|++.+|+++.++
T Consensus       125 ~~-----------~~l~~~~~-~~vl~g~~~~~a~~~gP~~~~~~~~g~~~---ig~-~~~~~~l~~~l~~~~~~~~~~~  188 (318)
T 3hwr_A          125 NA-----------DTLRSLLE-QEVAAAVVYVATEMAGPGHVRHHGRGELV---IEP-TSHGANLAAIFAAAGVPVETSD  188 (318)
T ss_dssp             HH-----------HHHHHHCC-SEEEEEEEEEEEEEEETTEEEEEEEEEEE---ECC-CTTTHHHHHHHHHTTCCEEECS
T ss_pred             cH-----------HHHHHHcC-CcEEEEEEEEeEEEcCCeEEEEcCCceEE---EcC-CHHHHHHHHHHHhCCCCcEech
Confidence            75           34555554 11      123568899999988777443   333 4667899999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhccCCCC---CccHHHHHHHHHHHHHHH-HHCCCCCCC
Q 019978          276 DLVTHEVMGGLKNVYAIGAGMVAALTNES---ATSKSVYFAHCTSEMVVM-HGMGRSWQK  331 (333)
Q Consensus       276 Di~gve~~~alkNv~Ai~~Gi~~gl~~~~---~n~~~~l~~~~~~E~~~l-~~~G~~~~~  331 (333)
                      |+.+.+|+++++|+..+..+++.+.+++.   +.....++.+++.|+..+ +++|.++..
T Consensus       189 Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~G~~l~~  248 (318)
T 3hwr_A          189 NVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVARAEGVKLPD  248 (318)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHHHTTCCCCT
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHHHcCCCCCh
Confidence            99999999999999999999999887631   234569999999999999 999998764

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=99.93  E-value=1.5e-25  Score=212.65  Aligned_cols=226  Identities=21%  Similarity=0.334  Sum_probs=176.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEec--CCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR--PGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      |||+|||+|+||+++|..|+++ |     ++|++|+|  +++++++++.++                .+..+  +.    
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~~~~~----------------~~~~~--g~----   52 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDN-G-----NEVRIWGTEFDTEILKSISAGR----------------EHPRL--GV----   52 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHH-C-----CEEEEECCGGGHHHHHHHHTTC----------------CBTTT--TB----
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEEccCCHHHHHHHHHhC----------------cCccc--Cc----
Confidence            6999999999999999999999 8     99999999  776654432111                00000  00    


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEec--CHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVT--NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~--d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                         .+                   .++.+++  +++++++++|+||++||++.++++++++.+ +++   +++||+++||
T Consensus        53 ---~~-------------------~~~~~~~~~~~~~~~~~~D~vi~~v~~~~~~~v~~~i~~-l~~---~~~vv~~~ng  106 (335)
T 1txg_A           53 ---KL-------------------NGVEIFWPEQLEKCLENAEVVLLGVSTDGVLPVMSRILP-YLK---DQYIVLISKG  106 (335)
T ss_dssp             ---CC-------------------CSEEEECGGGHHHHHTTCSEEEECSCGGGHHHHHHHHTT-TCC---SCEEEECCCS
T ss_pred             ---cc-------------------cceEEecHHhHHHHHhcCCEEEEcCChHHHHHHHHHHhc-CCC---CCEEEEEcCc
Confidence               00                   1356666  787888999999999999999999999999 876   7889999999


Q ss_pred             C---cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecC
Q 019978          200 V---EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNG  275 (333)
Q Consensus       200 i---~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~  275 (333)
                      +   .++     +.+.+++.+.+.+|.. .+..++.||+++.++..+.++.+++ +.+++..+.++++|+..+++++..+
T Consensus       107 ~~~~~~~-----~~~~l~~~~~~~~g~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~~~~  180 (335)
T 1txg_A          107 LIDFDNS-----VLTVPEAVWRLKHDLR-ERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVEVTT  180 (335)
T ss_dssp             EEEETTE-----EEEHHHHHHTTSTTCG-GGEEEEESSCCHHHHHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEES
T ss_pred             CccCCCC-----cCccHHHHHHHhcCCC-CcEEEEECCCcHHHHHccCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEecC
Confidence            9   543     2234445554433321 2467889999999888777655444 3456788999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhccCCCC-----CccHHHHHHHHHHHHHHH-HHCCCCCC
Q 019978          276 DLVTHEVMGGLKNVYAIGAGMVAALTNES-----ATSKSVYFAHCTSEMVVM-HGMGRSWQ  330 (333)
Q Consensus       276 Di~gve~~~alkNv~Ai~~Gi~~gl~~~~-----~n~~~~l~~~~~~E~~~l-~~~G~~~~  330 (333)
                      |+.+.+|+++++|++++++|++.++++ +     +|...+++..+++|+..+ +++|.+..
T Consensus       181 di~~~~~~k~~~N~~~~~~~~~~~~~~-~~l~~~~n~~~~~~~~~~~E~~~la~~~G~~~~  240 (335)
T 1txg_A          181 DIIGTEITSALKNVYSIAIAWIRGYES-RKNVEMSNAKGVIATRAINEMAELIEILGGDRE  240 (335)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGG
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence            999999999999999999999998877 4     566779999999999999 99998764

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=99.93  E-value=3.8e-26  Score=216.91  Aligned_cols=224  Identities=20%  Similarity=0.152  Sum_probs=167.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|+||+++|..|+++ |     ++|++|+|++  .++++.++                   ..+.+..   ++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~-g-----~~V~~~~r~~--~~~i~~~g-------------------~~~~~~~---g~   52 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRS-G-----EDVHFLLRRD--YEAIAGNG-------------------LKVFSIN---GD   52 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHT-S-----CCEEEECSTT--HHHHHHTC-------------------EEEEETT---CC
T ss_pred             CEEEEECcCHHHHHHHHHHHHC-C-----CeEEEEEcCc--HHHHHhCC-------------------CEEEcCC---Ce
Confidence            7999999999999999999999 8     9999999986  34433211                   1111100   00


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                      ..+                   .++.+++++++ +.++|+||+|||+++++++++++++++++   +++||+++||++..
T Consensus        53 ~~~-------------------~~~~~~~~~~~-~~~~D~vilavk~~~~~~~l~~l~~~l~~---~~~iv~l~nGi~~~  109 (312)
T 3hn2_A           53 FTL-------------------PHVKGYRAPEE-IGPMDLVLVGLKTFANSRYEELIRPLVEE---GTQILTLQNGLGNE  109 (312)
T ss_dssp             EEE-------------------SCCCEESCHHH-HCCCSEEEECCCGGGGGGHHHHHGGGCCT---TCEEEECCSSSSHH
T ss_pred             EEE-------------------eeceeecCHHH-cCCCCEEEEecCCCCcHHHHHHHHhhcCC---CCEEEEecCCCCcH
Confidence            011                   13556777765 68999999999999999999999999987   78999999999864


Q ss_pred             ccCCccCCCHHHHHHhHhCCCCC------cEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCC
Q 019978          204 LEAVPRIITPTQMINRATGVPIE------NILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGD  276 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~~------~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~D  276 (333)
                                 +.+.+.+|....      ..+.+.||+++.+...+....... ..+.+..+.++++|++.+|+++.++|
T Consensus       110 -----------~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~d  178 (312)
T 3hn2_A          110 -----------EALATLFGAERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFLPRDTGRIEELAAMFRQAGVDCRTTDD  178 (312)
T ss_dssp             -----------HHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEEEEEEEEESSCCCSHHHHHHHHHHHHTTCCEEECSC
T ss_pred             -----------HHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCCCCccHHHHHHHHHHHhCCCCcEEChH
Confidence                       456676753210      113456899987665432211111 12346789999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhccCCCC---CccHHHHHHHHHHHHHHH-HHCC--CCCCC
Q 019978          277 LVTHEVMGGLKNVYAIGAGMVAALTNES---ATSKSVYFAHCTSEMVVM-HGMG--RSWQK  331 (333)
Q Consensus       277 i~gve~~~alkNv~Ai~~Gi~~gl~~~~---~n~~~~l~~~~~~E~~~l-~~~G--~~~~~  331 (333)
                      +.+.+|.|+++|+..+..+++.+.+++.   ++...+++++++.|+..+ +++|  .++..
T Consensus       179 i~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~va~a~G~~~~~~~  239 (312)
T 3hn2_A          179 LKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIAGANAQGLATFIAD  239 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHHHHHTSCCSSCCCT
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHHHHHHcCCccCCCH
Confidence            9999999999999888888888877632   456789999999999999 9999  77653

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=99.92  E-value=1.2e-25  Score=214.07  Aligned_cols=221  Identities=18%  Similarity=0.208  Sum_probs=162.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|+||+++|..|+++ |     ++|++|+|++  .++++.+++              ..+..+..       +
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~-g-----~~V~~~~r~~--~~~i~~~Gl--------------~~~~~~~g-------~   53 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKT-G-----HCVSVVSRSD--YETVKAKGI--------------RIRSATLG-------D   53 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHT-T-----CEEEEECSTT--HHHHHHHCE--------------EEEETTTC-------C
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCh--HHHHHhCCc--------------EEeecCCC-------c
Confidence            7999999999999999999999 8     9999999986  244332221              00100111       1


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                      ..+                   .++.++++++++.+++|+||+|||+++++++++++++++++   +++||+++||+...
T Consensus        54 ~~~-------------------~~~~~~~~~~~~~~~~DlVilavK~~~~~~~l~~l~~~l~~---~t~Iv~~~nGi~~~  111 (320)
T 3i83_A           54 YTF-------------------RPAAVVRSAAELETKPDCTLLCIKVVEGADRVGLLRDAVAP---DTGIVLISNGIDIE  111 (320)
T ss_dssp             EEE-------------------CCSCEESCGGGCSSCCSEEEECCCCCTTCCHHHHHTTSCCT---TCEEEEECSSSSCS
T ss_pred             EEE-------------------eeeeeECCHHHcCCCCCEEEEecCCCChHHHHHHHHhhcCC---CCEEEEeCCCCChH
Confidence            011                   13556778877656899999999999999999999999987   78999999999875


Q ss_pred             ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCch-------HHHhccCceeEEEe----CChhhHHHHHHHhCCCCeEEE
Q 019978          204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIA-------SEIYNKEYANARIC----GAEKWRKPLAKFLRRPHFTVW  272 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a-------~ev~~~~~~~~~~~----~~~~~~~~l~~ll~~~~~~v~  272 (333)
                                 +.+++.++..    .+++||++.       .++....+..+.++    .+.+..+.++++|++.+|+++
T Consensus       112 -----------~~l~~~~~~~----~vl~g~~~~~a~~~~pg~v~~~~~~~~~ig~~~~~~~~~~~~l~~~l~~~~~~~~  176 (320)
T 3i83_A          112 -----------PEVAAAFPDN----EVISGLAFIGVTRTAPGEIWHQAYGRLMLGNYPGGVSERVKTLAAAFEEAGIDGI  176 (320)
T ss_dssp             -----------HHHHHHSTTS----CEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHHHTTSCEE
T ss_pred             -----------HHHHHHCCCC----cEEEEEEEeceEEcCCCEEEECCCCEEEEecCCCCccHHHHHHHHHHHhCCCCce
Confidence                       5677878642    255666664       23332223333332    234678999999999999999


Q ss_pred             ecCChhHHHHHHHHHHHHHHHHHHHhccCCC---CCccHHHHHHHHHHHHHHH-HHCCCCCCC
Q 019978          273 DNGDLVTHEVMGGLKNVYAIGAGMVAALTNE---SATSKSVYFAHCTSEMVVM-HGMGRSWQK  331 (333)
Q Consensus       273 ~s~Di~gve~~~alkNv~Ai~~Gi~~gl~~~---~~n~~~~l~~~~~~E~~~l-~~~G~~~~~  331 (333)
                      .++|+.+.+|+|+++|+.-....++.+..++   .++. .+++++++.|+..+ +++|.++..
T Consensus       177 ~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~-~~l~~~~~~E~~~va~a~G~~l~~  238 (320)
T 3i83_A          177 ATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQ-EGFVRAIMQEIRAVAAANGHPLPE  238 (320)
T ss_dssp             ECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHC-HHHHHHHHHHHHHHHHHTTCCCCT
T ss_pred             ECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcH-HHHHHHHHHHHHHHHHHcCCCCCh
Confidence            9999999999999999744444444444432   2334 89999999999999 999998764

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=99.91  E-value=9.2e-25  Score=209.29  Aligned_cols=234  Identities=15%  Similarity=0.116  Sum_probs=170.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +|||+|||+|+||+++|..|+++ |     ++|++|+|+ +.+++++.++                   ..... .    
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~-g-----~~V~~~~r~-~~~~~~~~~g-------------------~~~~~-~----   51 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALA-G-----EAINVLARG-ATLQALQTAG-------------------LRLTE-D----   51 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHT-T-----CCEEEECCH-HHHHHHHHTC-------------------EEEEE-T----
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEEECh-HHHHHHHHCC-------------------CEEec-C----
Confidence            48999999999999999999999 8     999999996 4454432211                   11110 0    


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                      +..++                  .++.+++++++ +.++|+||+|||+++++++++++++++++   +++||+++||++.
T Consensus        52 ~~~~~------------------~~~~~~~~~~~-~~~~D~Vilavk~~~~~~~~~~l~~~l~~---~~~iv~~~nGi~~  109 (335)
T 3ghy_A           52 GATHT------------------LPVRATHDAAA-LGEQDVVIVAVKAPALESVAAGIAPLIGP---GTCVVVAMNGVPW  109 (335)
T ss_dssp             TEEEE------------------ECCEEESCHHH-HCCCSEEEECCCHHHHHHHHGGGSSSCCT---TCEEEECCSSSCT
T ss_pred             CCeEE------------------EeeeEECCHHH-cCCCCEEEEeCCchhHHHHHHHHHhhCCC---CCEEEEECCCCcc
Confidence            00010                  14667788876 68999999999999999999999999887   7899999999851


Q ss_pred             cc-cC--CccCCC-----HHHHHHhHhCCCCCcE-------EEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCC
Q 019978          203 EL-EA--VPRIIT-----PTQMINRATGVPIENI-------LYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRR  266 (333)
Q Consensus       203 ~~-~~--~~~~~~-----~se~i~~~lg~~~~~~-------~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~  266 (333)
                      .. .+  ..+..+     ..+.+.+.+|.. .-+       +.+.+|+++.+...+....... ..+.+..+.++++|++
T Consensus       110 ~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~-~v~~gv~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~  188 (335)
T 3ghy_A          110 WFFDRPGPLQGQRLQAVDPHGRIAQAIPTR-HVLGCVVHLTCATVSPGHIRHGNGRRLILGEPAGGASPRLASIAALFGR  188 (335)
T ss_dssp             TTTCSSSTTTTCCCTTTCTTSHHHHHSCGG-GEEEEEECCCEEESSTTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccCCcHHHHHHhcCcc-cEEEEEEEEEEEEcCCcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHh
Confidence            10 00  001111     224677777632 111       5678999987665442221111 2234678999999999


Q ss_pred             CCeEEEecCChhHHHHHHH----HHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCCCC
Q 019978          267 PHFTVWDNGDLVTHEVMGG----LKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSWQK  331 (333)
Q Consensus       267 ~~~~v~~s~Di~gve~~~a----lkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~~~  331 (333)
                      .+|+++.++|+.+..|.+.    .+|++++.+|+..|..+ +++...++++++++|+..+ +++|.++..
T Consensus       189 ~g~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~~-~~~~~~~l~~~~~~E~~~va~a~G~~~~~  257 (335)
T 3ghy_A          189 AGLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRIL-DDPLVSAFCLAVMAEAKAIGARIGCPIEQ  257 (335)
T ss_dssp             TTCEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHHH-HSHHHHHHHHHHHHHHHHHHHTTTCCCCS
T ss_pred             CCCCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHHHh-cChHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            9999999999999987774    58888888888888776 5677889999999999999 999998753

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.90  E-value=4.6e-23  Score=194.09  Aligned_cols=210  Identities=13%  Similarity=0.104  Sum_probs=153.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|+||+++|..|+++ |     ++|++|+|+++.++...         .          +     +       
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~---------~----------~-----g-------   45 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQS-L-----PHTTLIGRHAKTITYYT---------V----------P-----H-------   45 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHH-C-----TTCEEEESSCEEEEEES---------S----------T-----T-------
T ss_pred             cEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEEeccCcEEEEe---------c----------C-----C-------
Confidence            7999999999999999999999 8     89999999976543100         0          0     0       


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~-~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                       ..                    +..++.+..+++ +++|+||+|||+++++++++++++++++   +++||+++||++.
T Consensus        46 -~~--------------------~~~~~~~~~~~~~~~~D~vilavk~~~~~~~l~~l~~~l~~---~~~iv~~~nGi~~  101 (294)
T 3g17_A           46 -AP--------------------AQDIVVKGYEDVTNTFDVIIIAVKTHQLDAVIPHLTYLAHE---DTLIILAQNGYGQ  101 (294)
T ss_dssp             -SC--------------------CEEEEEEEGGGCCSCEEEEEECSCGGGHHHHGGGHHHHEEE---EEEEEECCSSCCC
T ss_pred             -ee--------------------ccceecCchHhcCCCCCEEEEeCCccCHHHHHHHHHHhhCC---CCEEEEeccCccc
Confidence             00                    122223334444 7899999999999999999999999987   7899999999998


Q ss_pred             cccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCChhHHHH
Q 019978          203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEV  282 (333)
Q Consensus       203 ~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di~gve~  282 (333)
                      .+.      .+.   .+.++......+.+.||+++. .  + +..... ++.+..+.++++|++.+|+++.++|+.+.+|
T Consensus       102 ~~~------~~~---~~v~~g~~~~~a~~~~pg~v~-~--~-~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w  167 (294)
T 3g17_A          102 LEH------IPF---KNVCQAVVYISGQKKGDVVTH-F--R-DYQLRI-QDNALTRQFRDLVQDSQIDIVLEANIQQAIW  167 (294)
T ss_dssp             GGG------CCC---SCEEECEEEEEEEEETTEEEE-E--E-EEEEEE-ECSHHHHHHHHHTTTSSCEEEEESSHHHHHH
T ss_pred             Hhh------CCC---CcEEEEEEEEEEEEcCCCEEE-E--C-CCEEec-CccHHHHHHHHHHHhCCCceEEChHHHHHHH
Confidence            630      010   011110001235678999872 2  2 222222 3456789999999999999999999999999


Q ss_pred             HHHHHHH-HHHHHHHHhccCCC---CCccHHHHHHHHHHHHHHH-HHCCCCCC
Q 019978          283 MGGLKNV-YAIGAGMVAALTNE---SATSKSVYFAHCTSEMVVM-HGMGRSWQ  330 (333)
Q Consensus       283 ~~alkNv-~Ai~~Gi~~gl~~~---~~n~~~~l~~~~~~E~~~l-~~~G~~~~  330 (333)
                      .|+++|+ ++ .+++ .+..++   .++....++++++.|+..+ +++|.++.
T Consensus       168 ~Kl~~N~~in-l~al-~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G~~l~  218 (294)
T 3g17_A          168 YKLLVNLGIN-SITA-LGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEGLNFS  218 (294)
T ss_dssp             HHHHHHHHHH-HHHH-HHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHH-HHHH-HCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            9999999 45 4444 455542   2566789999999999999 99999865

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=99.88  E-value=4.1e-22  Score=186.58  Aligned_cols=225  Identities=14%  Similarity=0.139  Sum_probs=161.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +|||+|||+|+||+++|..|+++ |     ++|++|+|+++++++++.+++                   ...+..    
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~r~~~~~~~~~~~g~-------------------~~~~~~----   53 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQG-G-----NDVTLIDQWPAHIEAIRKNGL-------------------IADFNG----   53 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHHCE-------------------EEEETT----
T ss_pred             CCeEEEECcCHHHHHHHHHHHhC-C-----CcEEEEECCHHHHHHHHhCCE-------------------EEEeCC----
Confidence            58999999999999999999999 8     999999999877654432110                   011000    


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecC--HHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTN--LQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d--~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                      + .++                  .++.++++  ..++++++|+||+|||++.++++++++.+++++   +++|+++++|+
T Consensus        54 ~-~~~------------------~~~~~~~~~~~~~~~~~~d~vi~~v~~~~~~~v~~~l~~~l~~---~~~iv~~~~g~  111 (316)
T 2ew2_A           54 E-EVV------------------ANLPIFSPEEIDHQNEQVDLIIALTKAQQLDAMFKAIQPMITE---KTYVLCLLNGL  111 (316)
T ss_dssp             E-EEE------------------ECCCEECGGGCCTTSCCCSEEEECSCHHHHHHHHHHHGGGCCT---TCEEEECCSSS
T ss_pred             C-eeE------------------ecceeecchhhcccCCCCCEEEEEeccccHHHHHHHHHHhcCC---CCEEEEecCCC
Confidence            0 000                  02333332  112234899999999999999999999998876   78999999998


Q ss_pred             cccccCCccCCCHHHHHHhHhCCCC------CcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEe
Q 019978          201 EAELEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWD  273 (333)
Q Consensus       201 ~~~~~~~~~~~~~se~i~~~lg~~~------~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~  273 (333)
                      ...           +.+.+.++...      ...+.+.||+++.+...+.+..... +.+++..+.++++|+..+++++.
T Consensus       112 ~~~-----------~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~g~~~~~  180 (316)
T 2ew2_A          112 GHE-----------DVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIELENIDPSGKKFALEVVDVFQKAGLNPSY  180 (316)
T ss_dssp             CTH-----------HHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEEEEESSGGGHHHHHHHHHHHHHTTCCEEE
T ss_pred             CcH-----------HHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEEEeecCCCccHHHHHHHHHHHhCCCCcEE
Confidence            753           33555554210      0012367899887666665543322 34557789999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHhccCCC--CCccHH-HHHHHHHHHHHHH-HHCCCCC
Q 019978          274 NGDLVTHEVMGGLKNVYAIGAGMVAALTNE--SATSKS-VYFAHCTSEMVVM-HGMGRSW  329 (333)
Q Consensus       274 s~Di~gve~~~alkNv~Ai~~Gi~~gl~~~--~~n~~~-~l~~~~~~E~~~l-~~~G~~~  329 (333)
                      .+|+.+.+|+++++|++..+.+.+.+.+.+  ..|... .++..++.|+..+ +++|.+.
T Consensus       181 ~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~la~~~G~~~  240 (316)
T 2ew2_A          181 SSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAVAEKEAIYL  240 (316)
T ss_dssp             CTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             chhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999988887777766421  133344 8999999999999 9999876

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=99.84  E-value=4e-20  Score=184.40  Aligned_cols=218  Identities=17%  Similarity=0.113  Sum_probs=162.0

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ...+|+|||+|+||+++|..|+++ |     |+|++|+|++++++.++.         +        +++.|.+++.   
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~~-G-----~~V~~~D~~~~kv~~l~~---------g--------~~~~~epgl~---   60 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSDF-G-----HEVVCVDKDARKIELLHQ---------N--------VMPIYEPGLD---   60 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCSTTHHHHTT---------T--------CCSSCCTTHH---
T ss_pred             CceEEEEEcCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHhc---------C--------CCCccCCCHH---
Confidence            457999999999999999999999 8     999999999998876442         2        3566777643   


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-----------hHHHHHHHHHhhhhccCCC
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----------ETKEVFEEISRYWKERITV  190 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-----------~~~~vl~~i~~~l~~~~~~  190 (333)
                              |++.+...       ..++++++|+++++++||+||+|||+.           +++++++.+.+++++   +
T Consensus        61 --------~~~~~~~~-------~g~l~~ttd~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~---g  122 (446)
T 4a7p_A           61 --------ALVASNVK-------AGRLSFTTDLAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTK---P  122 (446)
T ss_dssp             --------HHHHHHHH-------TTCEEEESCHHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCS---C
T ss_pred             --------HHHHhhcc-------cCCEEEECCHHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCC---C
Confidence                    12211100       026889999999999999999997654           599999999999887   6


Q ss_pred             CEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhc----cCceeEEEeC-ChhhHHHHHHHhC
Q 019978          191 PVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICG-AEKWRKPLAKFLR  265 (333)
Q Consensus       191 ~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~----~~~~~~~~~~-~~~~~~~l~~ll~  265 (333)
                      ++||..+ +++++     +.+.+++.+.+..+.  ..+.++++|.++.++..    ..++.+++++ +++..+.++.+|+
T Consensus       123 ~iVV~~S-Tv~pg-----tt~~l~~~l~e~~~~--~d~~v~~~Pe~a~eG~a~~d~~~p~~ivvG~~~~~~~~~~~~ly~  194 (446)
T 4a7p_A          123 SVIVTKS-TVPVG-----TGDEVERIIAEVAPN--SGAKVVSNPEFLREGAAIEDFKRPDRVVVGTEDEFARQVMREIYR  194 (446)
T ss_dssp             CEEEECS-CCCTT-----HHHHHHHHHHHHSTT--SCCEEEECCCCCCTTSHHHHHHSCSCEEEECSCHHHHHHHHHHHC
T ss_pred             CEEEEeC-CCCch-----HHHHHHHHHHHhCCC--CCceEEeCcccccccchhhhccCCCEEEEeCCcHHHHHHHHHHHH
Confidence            7777655 78776     345667777665432  45779999999988764    4565556655 4678899999998


Q ss_pred             CCCeE---EEecCChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCC
Q 019978          266 RPHFT---VWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSW  329 (333)
Q Consensus       266 ~~~~~---v~~s~Di~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~  329 (333)
                      ...-.   ++...|+.++|.+|...|.                  ..++....++|+..+ +++|.+.
T Consensus       195 ~~~~~~~~~~~~~d~~~aE~~Kl~~N~------------------~~a~~ia~~nE~~~l~~~~GiD~  244 (446)
T 4a7p_A          195 PLSLNQSAPVLFTGRRTSELIKYAANA------------------FLAVKITFINEIADLCEQVGADV  244 (446)
T ss_dssp             SCC-----CEEEECHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHhcCCCeEEEeCCHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHcCCCH
Confidence            64332   4678899999999776664                  455666677888888 7887764

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=99.83  E-value=1.2e-20  Score=177.43  Aligned_cols=226  Identities=14%  Similarity=0.080  Sum_probs=159.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCC-eeEEEEecCCcchhhhhh-hhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDK-VLIRIWRRPGRSVDRATA-EHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~-~~V~l~~r~~~~~~~~~~-~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      +|||+|||+|+||+++|..|+++ +....+ ++|++|+| ++++++++. .+                   ....+..+ 
T Consensus         8 ~m~I~iiG~G~mG~~~a~~L~~~-~~~~~g~~~V~~~~r-~~~~~~l~~~~g-------------------~~~~~~~~-   65 (317)
T 2qyt_A            8 PIKIAVFGLGGVGGYYGAMLALR-AAATDGLLEVSWIAR-GAHLEAIRAAGG-------------------LRVVTPSR-   65 (317)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHH-HHHTTSSEEEEEECC-HHHHHHHHHHTS-------------------EEEECSSC-
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC-ccccCCCCCEEEEEc-HHHHHHHHhcCC-------------------eEEEeCCC-
Confidence            47999999999999999999876 111112 78999999 655554332 11                   01110000 


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                        + ..            .      .++.++++.+ +++++|+||+|||++.++++++++++++++   +++||++++|+
T Consensus        66 --~-~~------------~------~~~~~~~~~~-~~~~~D~vil~vk~~~~~~v~~~i~~~l~~---~~~iv~~~nG~  120 (317)
T 2qyt_A           66 --D-FL------------A------RPTCVTDNPA-EVGTVDYILFCTKDYDMERGVAEIRPMIGQ---NTKILPLLNGA  120 (317)
T ss_dssp             --E-EE------------E------CCSEEESCHH-HHCCEEEEEECCSSSCHHHHHHHHGGGEEE---EEEEEECSCSS
T ss_pred             --C-eE------------E------ecceEecCcc-ccCCCCEEEEecCcccHHHHHHHHHhhcCC---CCEEEEccCCC
Confidence              0 00            0      1355666664 468999999999999999999999998876   67899999998


Q ss_pred             cccccCCccCCCHHHHHHhHhCCCC------CcEEEEcCCCchHHHhccCceeEEEeC-----ChhhHHHHHHHhCCCCe
Q 019978          201 EAELEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARICG-----AEKWRKPLAKFLRRPHF  269 (333)
Q Consensus       201 ~~~~~~~~~~~~~se~i~~~lg~~~------~~~~vl~GP~~a~ev~~~~~~~~~~~~-----~~~~~~~l~~ll~~~~~  269 (333)
                      ...           +.+++.++...      ...+.+.||+++.....+.  ..+++.     +.+.. .++++|+..++
T Consensus       121 ~~~-----------~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g~--~~~ig~~~~~~~~~~~-~~~~ll~~~g~  186 (317)
T 2qyt_A          121 DIA-----------ERMRTYLPDTVVWKGCVYISARKSAPGLITLEADRE--LFYFGSGLPEQTDDEV-RLAELLTAAGI  186 (317)
T ss_dssp             SHH-----------HHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEEE--EEEEECCSSSCCHHHH-HHHHHHHHTTC
T ss_pred             CcH-----------HHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCCc--eEEEcCCCCCCcCHHH-HHHHHHHHCCC
Confidence            753           44666665321      1124556777765443332  121321     24456 89999999999


Q ss_pred             EEEecCChhHHHHHHHHHHHHHHHHHHHhccCCCCCcc--HHHHHHHHHHHHHHH-HHCCCCCC
Q 019978          270 TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATS--KSVYFAHCTSEMVVM-HGMGRSWQ  330 (333)
Q Consensus       270 ~v~~s~Di~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~--~~~l~~~~~~E~~~l-~~~G~~~~  330 (333)
                      +++..+|+.+.+|.++++|+...+.+++.+.++ +...  ...++.+++.|+..+ +++|.+..
T Consensus       187 ~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~-g~~~~~~~~~~~~~~~E~~~v~~a~G~~~~  249 (317)
T 2qyt_A          187 RAYNPTDIDWYIMKKFMMISVTATATAYFDKPI-GSILTEHEPELLSLLEEVAELFRAKYGQVP  249 (317)
T ss_dssp             CEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCH-HHHHHHCHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             CCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            999999999999999999998888888888876 3332  347899999999999 99999864

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=99.83  E-value=3.2e-20  Score=172.01  Aligned_cols=217  Identities=11%  Similarity=0.061  Sum_probs=153.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|+||+++|..|+++ |     ++|++|+|+++++++++..+                     ..+      .
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~r~~~~~~~l~~~~---------------------~~~------~   47 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQ-G-----HEVQGWLRVPQPYCSVNLVE---------------------TDG------S   47 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCSEEEEEEEC---------------------TTS------C
T ss_pred             CeEEEECcCHHHHHHHHHHHhC-C-----CCEEEEEcCccceeeEEEEc---------------------CCC------c
Confidence            6999999999999999999999 8     99999999987654321100                     000      0


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                       .++                  ..+.. ++. ++++++|+||++||++.++++++++.+++++   +++|+++++|+...
T Consensus        48 -~~~------------------~~~~~-~~~-~~~~~~d~vi~~v~~~~~~~v~~~l~~~l~~---~~~vv~~~~g~~~~  103 (291)
T 1ks9_A           48 -IFN------------------ESLTA-NDP-DFLATSDLLLVTLKAWQVSDAVKSLASTLPV---TTPILLIHNGMGTI  103 (291)
T ss_dssp             -EEE------------------EEEEE-SCH-HHHHTCSEEEECSCGGGHHHHHHHHHTTSCT---TSCEEEECSSSCTT
T ss_pred             -eee------------------eeeee-cCc-cccCCCCEEEEEecHHhHHHHHHHHHhhCCC---CCEEEEecCCCCcH
Confidence             000                  01222 343 5678999999999999999999999998876   78899999998653


Q ss_pred             ccCCccCCCHHHHHHhHhCC--C--CCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCChhH
Q 019978          204 LEAVPRIITPTQMINRATGV--P--IENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT  279 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~--~--~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di~g  279 (333)
                      .           .+.+.++.  .  ....+.+.|| .+.+...+.........+++..+.++++|+..++++++.+|+.+
T Consensus       104 ~-----------~l~~~~~~~~~g~~~~~~~~~~p-~~~~~~~g~~~i~~~~~~~~~~~~~~~ll~~~g~~~~~~~~~~~  171 (291)
T 1ks9_A          104 E-----------ELQNIQQPLLMGTTTHAARRDGN-VIIHVANGITHIGPARQQDGDYSYLADILQTVLPDVAWHNNIRA  171 (291)
T ss_dssp             G-----------GGTTCCSCEEEEEECCEEEEETT-EEEEEECCCEEEEESSGGGTTCTHHHHHHHTTSSCEEECTTHHH
T ss_pred             H-----------HHHHhcCCeEEEEEeEccEEcCC-EEEEecccceEEccCCCCcchHHHHHHHHHhcCCCCeecHHHHH
Confidence            1           13333331  0  0113467899 66655555422211133456778999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCC
Q 019978          280 HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSW  329 (333)
Q Consensus       280 ve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~  329 (333)
                      ..|.+.+.|..-.....+.+.+++.-.....++..++.|+..+ +++|.+.
T Consensus       172 ~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G~~~  222 (291)
T 1ks9_A          172 ELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHT  222 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999887555555555554421111358899999999999 9999875

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=99.83  E-value=4.5e-20  Score=185.49  Aligned_cols=220  Identities=14%  Similarity=0.077  Sum_probs=159.0

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      +..|||+|||+|+||+.+|..|+++ |     |+|++|++++++++.++..                 +++.+.+++.  
T Consensus         6 ~~~~~I~VIG~G~vG~~lA~~la~~-G-----~~V~~~d~~~~~v~~l~~~-----------------~~~i~e~gl~--   60 (478)
T 2y0c_A            6 HGSMNLTIIGSGSVGLVTGACLADI-G-----HDVFCLDVDQAKIDILNNG-----------------GVPIHEPGLK--   60 (478)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHTT-----------------CCSSCCTTHH--
T ss_pred             CCCceEEEECcCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHCC-----------------CCCcCCCCHH--
Confidence            4579999999999999999999999 8     9999999999887654421                 1234444321  


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------hhHHHHHHHHHhhhhccCCC
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------TETKEVFEEISRYWKERITV  190 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps----------~~~~~vl~~i~~~l~~~~~~  190 (333)
                               |++.+...       ..++.+++|+++++++||+||+|||+          ++++++++++.+++++   +
T Consensus        61 ---------~~l~~~~~-------~~~l~~ttd~~~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~---~  121 (478)
T 2y0c_A           61 ---------EVIARNRS-------AGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTG---F  121 (478)
T ss_dssp             ---------HHHHHHHH-------TTCEEEECCHHHHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCS---C
T ss_pred             ---------HHHHHhcc-------cCCEEEECCHHHHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCC---C
Confidence                     11111000       02578999998889999999999998          8999999999999987   6


Q ss_pred             CEEEEeeecCcccccCCccCCCHHHHHHhHhCCCC--CcEEEEcCCCchHHHhc----cCceeEEEeCC-h----hhHHH
Q 019978          191 PVIISLAKGVEAELEAVPRIITPTQMINRATGVPI--ENILYLGGPNIASEIYN----KEYANARICGA-E----KWRKP  259 (333)
Q Consensus       191 ~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~--~~~~vl~GP~~a~ev~~----~~~~~~~~~~~-~----~~~~~  259 (333)
                      ++||..+ ++++++     .+.+++.+.+.++.+.  ..+.+.++|.++.+...    ..+..++++.+ +    +..+.
T Consensus       122 ~iVV~~S-Tv~~gt-----~~~l~~~l~~~~~~g~~~~~~~v~~~Pe~~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~  195 (478)
T 2y0c_A          122 KVIVDKS-TVPVGT-----AERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIVIGCDDDVPGERAREL  195 (478)
T ss_dssp             EEEEECS-CCCTTH-----HHHHHHHHHHHHHHTTCCCCEEEEECCCCCCTTCHHHHHHSCSCEEEECCSSHHHHHHHHH
T ss_pred             CEEEEeC-CcCCCc-----hHHHHHHHHHHhcCCCCCccEEEEEChhhhcccceeeccCCCCEEEEEECCCcccHHHHHH
Confidence            7776554 777652     3445666665432111  34678999999987654    34544555433 4    57888


Q ss_pred             HHHHhCCCCe---EEEecCChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCC
Q 019978          260 LAKFLRRPHF---TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSW  329 (333)
Q Consensus       260 l~~ll~~~~~---~v~~s~Di~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~  329 (333)
                      ++++|+. .+   .++...|+.++||+|.+-|.                  ..++....++|+..+ +++|.+.
T Consensus       196 ~~~l~~~-~~~~~~~~~~~di~~ae~~Kl~~N~------------------~~a~~ia~~nE~~~la~~~Gid~  250 (478)
T 2y0c_A          196 MKKLYAP-FNRNHERTLYMDVRSAEFTKYAANA------------------MLATRISFMNELANLADRFGADI  250 (478)
T ss_dssp             HHHHTGG-GGSSSCCEEEECHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHH-HhccCCeEEcCCHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhCCCH
Confidence            9999985 55   37788999999999998886                  345666778888888 7888764

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=99.83  E-value=2.2e-20  Score=177.08  Aligned_cols=211  Identities=13%  Similarity=0.054  Sum_probs=150.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|+||+++|..|+ + |     ++|++|+|+++++++++.+++                   .... .    +
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~-g-----~~V~~~~r~~~~~~~l~~~G~-------------------~~~~-~----~   51 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-L-Y-----HDVTVVTRRQEQAAAIQSEGI-------------------RLYK-G----G   51 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-T-T-----SEEEEECSCHHHHHHHHHHCE-------------------EEEE-T----T
T ss_pred             CEEEEECCCHHHHHHHHHHh-c-C-----CceEEEECCHHHHHHHHhCCc-------------------eEec-C----C
Confidence            89999999999999999999 8 8     999999999876655433221                   1110 0    0


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                      ...+                  ..+..+.   ++...+|+||+|||++++++++++++++ .+   ++ ||+++||+...
T Consensus        52 ~~~~------------------~~~~~~~---~~~~~~D~vilavK~~~~~~~l~~l~~~-~~---~~-ivs~~nGi~~~  105 (307)
T 3ego_A           52 EEFR------------------ADCSADT---SINSDFDLLVVTVKQHQLQSVFSSLERI-GK---TN-ILFLQNGMGHI  105 (307)
T ss_dssp             EEEE------------------ECCEEES---SCCSCCSEEEECCCGGGHHHHHHHTTSS-CC---CE-EEECCSSSHHH
T ss_pred             Ceec------------------ccccccc---cccCCCCEEEEEeCHHHHHHHHHHhhcC-CC---Ce-EEEecCCccHH
Confidence            0000                  0222222   2457899999999999999999999875 44   56 99999999975


Q ss_pred             ccCCccCCCHHHHHHhHhCCCC------CcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCCh
Q 019978          204 LEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL  277 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~------~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di  277 (333)
                                 +.+++.+|...      ...+.+.+|++......+...+....+..+..+.+.+.|+..++++.+++|+
T Consensus       106 -----------e~l~~~~~~~~vl~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~l~~~l~~ag~~~~~~~di  174 (307)
T 3ego_A          106 -----------HDLKDWHVGHSIYVGIVEHGAVRKSDTAVDHTGLGAIKWSAFDDAEPDRLNILFQHNHSDFPIYYETDW  174 (307)
T ss_dssp             -----------HHHHTCCCSCEEEEEEECCEEEECSSSEEEEEECCCEEEEECTTCCGGGGTTTTSSCCTTSCEEECSCH
T ss_pred             -----------HHHHHhCCCCcEEEEEEeeceEECCCCEEEEeeeeeEEEEeCCCCcHHHHHHHHHhhhCCCCcEechhH
Confidence                       45777666321      1124556788776554443222222222456777888999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccCCCC---CccHHHHHHHHHHHHHHH
Q 019978          278 VTHEVMGGLKNVYAIGAGMVAALTNES---ATSKSVYFAHCTSEMVVM  322 (333)
Q Consensus       278 ~gve~~~alkNv~Ai~~Gi~~gl~~~~---~n~~~~l~~~~~~E~~~l  322 (333)
                      .+..|.+.+.|+.-.....+.+..++.   +.....++..++.|+..+
T Consensus       175 ~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~l~~~l~~E~~~v  222 (307)
T 3ego_A          175 YRLLTGKLIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQEACRI  222 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCTTHHHHSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhHHHHHhcCCcchhhcChhHHHHHHHHHHHHHHH
Confidence            999999999999666777777777732   223458999999999998

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=99.81  E-value=3.1e-19  Score=178.12  Aligned_cols=218  Identities=14%  Similarity=0.117  Sum_probs=158.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|+||+++|..|+++ |     ++|++|+++++++++++.         +        .++.+.+++.     
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~-G-----~~V~~~D~~~~~v~~l~~---------g--------~~~i~e~gl~-----   54 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAEL-G-----ANVRCIDTDRNKIEQLNS---------G--------TIPIYEPGLE-----   54 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHH---------T--------CSCCCSTTHH-----
T ss_pred             CEEEEECcCHHHHHHHHHHHhc-C-----CEEEEEECCHHHHHHHHc---------C--------CCcccCCCHH-----
Confidence            7999999999999999999999 8     999999999987765432         1        2344444432     


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------hHHHHHHHHHhhhhccCCCCEE
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI  193 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~----------~~~~vl~~i~~~l~~~~~~~~I  193 (333)
                            |++.+...       ..++.+++|++++++++|+||+|||+.          .++++++++.+++++   +++|
T Consensus        55 ------~~l~~~~~-------~~~l~~t~d~~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~---g~iV  118 (450)
T 3gg2_A           55 ------KMIARNVK-------AGRLRFGTEIEQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSR---YILI  118 (450)
T ss_dssp             ------HHHHHHHH-------TTSEEEESCHHHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCS---CEEE
T ss_pred             ------HHHHhhcc-------cCcEEEECCHHHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCC---CCEE
Confidence                  11111000       025888999999999999999999987          899999999999887   6777


Q ss_pred             EEeeecCcccccCCccCCCHHHHHHhHhCCC--CCcEEEEcCCCchHHHhc----cCceeEEEe-CChhhHHHHHHHhCC
Q 019978          194 ISLAKGVEAELEAVPRIITPTQMINRATGVP--IENILYLGGPNIASEIYN----KEYANARIC-GAEKWRKPLAKFLRR  266 (333)
Q Consensus       194 vs~~kGi~~~~~~~~~~~~~se~i~~~lg~~--~~~~~vl~GP~~a~ev~~----~~~~~~~~~-~~~~~~~~l~~ll~~  266 (333)
                      |..+ +++++     +.+.+.+.+++..+..  ...+.++++|+++.+...    ..++.++++ .+++..+.++.+|+.
T Consensus       119 V~~S-Tv~pg-----t~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~a~eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~  192 (450)
T 3gg2_A          119 VTKS-TVPVG-----SYRLIRKAIQEELDKREVLIDFDIASNPEFLKEGNAIDDFMKPDRVVVGVDSDRARELITSLYKP  192 (450)
T ss_dssp             EECS-CCCTT-----HHHHHHHHHHHHHHHTTCCCCEEEEECCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTT
T ss_pred             EEee-eCCCc-----chHHHHHHHHHhccccCcCcceeEEechhhhcccchhhhccCCCEEEEEcCCHHHHHHHHHHHHH
Confidence            6655 56665     3445666666543210  134779999999987654    445555554 456788999999985


Q ss_pred             CCe--EEEecCChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCC
Q 019978          267 PHF--TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSW  329 (333)
Q Consensus       267 ~~~--~v~~s~Di~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~  329 (333)
                      ..-  .++...|+.++|+++...|.                  ..++....++|+..+ +++|++.
T Consensus       193 ~~~~~~~~~~~d~~~aE~~Kl~~N~------------------~~a~~ia~~nE~~~l~~~~Gid~  240 (450)
T 3gg2_A          193 MLLNNFRVLFMDIASAEMTKYAANA------------------MLATRISFMNDVANLCERVGADV  240 (450)
T ss_dssp             TCCSCCCEEEECHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHTCCH
T ss_pred             HhcCCCeEEecCHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhCCCH
Confidence            432  14568899999997765554                  567777888888888 8888764

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.79  E-value=1.8e-19  Score=167.20  Aligned_cols=206  Identities=12%  Similarity=0.077  Sum_probs=149.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|.||++++..|.+. |     ++|++|+|++++++++.         +.               +       
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~~~~~~~~~~~---------~~---------------g-------   43 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRR-G-----HYLIGVSRQQSTCEKAV---------ER---------------Q-------   43 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHH---------HT---------------T-------
T ss_pred             CEEEEEcCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHH---------hC---------------C-------
Confidence            6999999999999999999998 8     89999999987554211         00               0       


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                        .                    ...++++++++ .++|+||+|||++.+.++++++.+++++   +++|+++ .++...
T Consensus        44 --~--------------------~~~~~~~~~~~-~~~D~vi~av~~~~~~~~~~~l~~~~~~---~~~vv~~-~~~~~~   96 (279)
T 2f1k_A           44 --L--------------------VDEAGQDLSLL-QTAKIIFLCTPIQLILPTLEKLIPHLSP---TAIVTDV-ASVKTA   96 (279)
T ss_dssp             --S--------------------CSEEESCGGGG-TTCSEEEECSCHHHHHHHHHHHGGGSCT---TCEEEEC-CSCCHH
T ss_pred             --C--------------------CccccCCHHHh-CCCCEEEEECCHHHHHHHHHHHHhhCCC---CCEEEEC-CCCcHH
Confidence              0                    11245677777 8999999999999999999999988876   6788876 333322


Q ss_pred             ccCCccCCCHHHHHHhHhCC--CCCcEE--EEcCCCchH-HHhccCceeEEEe--CChhhHHHHHHHhCCCCeEEEecCC
Q 019978          204 LEAVPRIITPTQMINRATGV--PIENIL--YLGGPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD  276 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~--~~~~~~--vl~GP~~a~-ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v~~s~D  276 (333)
                      .        . +.+.+.++.  +.+++.  +..||.++. ++..+.++.++..  .+++..+.++++|+..+++++..+|
T Consensus        97 ~--------~-~~~~~~~~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~  167 (279)
T 2f1k_A           97 I--------A-EPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYLCTP  167 (279)
T ss_dssp             H--------H-HHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTCEEEECCH
T ss_pred             H--------H-HHHHHHhCCEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence            1        1 222332321  011221  334677665 4455555544432  3567889999999999999999999


Q ss_pred             hhHHHHHHHHHHH-HHHHHHHHhccCCCCC----ccHHHHHHHHHHHHHHH
Q 019978          277 LVTHEVMGGLKNV-YAIGAGMVAALTNESA----TSKSVYFAHCTSEMVVM  322 (333)
Q Consensus       277 i~gve~~~alkNv-~Ai~~Gi~~gl~~~~~----n~~~~l~~~~~~E~~~l  322 (333)
                      ....+|+++++|. .+++.++++++...+.    +....|+++++.|+..+
T Consensus       168 ~~~~~~~~~~~~~p~~i~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~  218 (279)
T 2f1k_A          168 ADHDQAVAWISHLPVMVSAALIQACAGEKDGDILKLAQNLASSGFRDTSRV  218 (279)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCHHHHHHHTG
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHhcccccchhHHHhhcCCcccchhcc
Confidence            9999999999996 7888999998876553    45668999999998765

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=99.74  E-value=7.7e-19  Score=171.78  Aligned_cols=228  Identities=13%  Similarity=0.171  Sum_probs=144.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHH-hcCCCCCCeeEEEEe---cCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQD-SYGYLRDKVLIRIWR---RPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE  118 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~-~~G~~~~~~~V~l~~---r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~  118 (333)
                      +|||+|||+|+||+++|..|++ + |     ++|++|+   |++++++++        +++...     ..+..+.++. 
T Consensus         2 ~mkI~ViGaG~~G~~~a~~La~~~-G-----~~V~~~~~~~r~~~~~~~~--------~~~~g~-----~~~~~~~~~~-   61 (404)
T 3c7a_A            2 TVKVCVCGGGNGAHTLSGLAASRD-G-----VEVRVLTLFADEAERWTKA--------LGADEL-----TVIVNEKDGT-   61 (404)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTST-T-----EEEEEECCSTTHHHHHHHH--------HTTSCE-----EEEEECSSSC-
T ss_pred             CceEEEECCCHHHHHHHHHHHhCC-C-----CEEEEEeCCCCcHHHHHHH--------Hhhccc-----eeeeecCCCc-
Confidence            4799999999999999999987 6 7     9999999   665544321        111100     0000011000 


Q ss_pred             hhhcCCcccchhhhhccccccCCCCCCCCeE-EecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEe-
Q 019978          119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLK-VVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL-  196 (333)
Q Consensus       119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~-~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~-  196 (333)
                          ...++                  ..+. +++|++++++++|+||+|||++.++++++++.+++++   +++|++. 
T Consensus        62 ----~~~~~------------------~~~~~~~~~~~~a~~~aD~Vilav~~~~~~~v~~~l~~~l~~---~~ivv~~~  116 (404)
T 3c7a_A           62 ----QTEVK------------------SRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQD---SALIVGLP  116 (404)
T ss_dssp             ----EEEEE------------------ECCSEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTCCT---TCEEEETT
T ss_pred             ----cceee------------------ccceEEeCCHHHHhCCCCEEEEeCchHHHHHHHHHHHhhCCC---CcEEEEcC
Confidence                00000                  1233 6788988889999999999999999999999999887   7888884 


Q ss_pred             -eecCcccccCCccCCCHHHHHHhH-----h-CCCCCc-EEEEcCCCchHHHhccCcee--EEE-e--C-ChhhHHHHHH
Q 019978          197 -AKGVEAELEAVPRIITPTQMINRA-----T-GVPIEN-ILYLGGPNIASEIYNKEYAN--ARI-C--G-AEKWRKPLAK  262 (333)
Q Consensus       197 -~kGi~~~~~~~~~~~~~se~i~~~-----l-g~~~~~-~~vl~GP~~a~ev~~~~~~~--~~~-~--~-~~~~~~~l~~  262 (333)
                       ++|+....         .+.+.+.     + +....+ .+.+.||+++.++.......  ... .  . .+...+.+++
T Consensus       117 ~~~G~~~~~---------~~~l~~~~~~~v~~~~~~~~~~~~~~gpg~~v~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~  187 (404)
T 3c7a_A          117 SQAGFEFQC---------RDILGDKAAAVSMMSFETLPWACRIKEFGRKVEVLGTKSVLAASLIKGTAKTVDPLSTLQML  187 (404)
T ss_dssp             CCTTHHHHH---------HHHHGGGGGTSEEEEESSCSEEEEEEETTTEEEEEEECSEEEEEEECCSSCCSCHHHHHHHH
T ss_pred             CCccHHHHH---------HHHHHhcCCCeEEEEecCchHhhcccCCCcEEEEEEECceEEEEEccCCcchHHHHHHHHHH
Confidence             44433220         1223321     1 100122 35668899766655433111  112 2  1 2335566666


Q ss_pred             HhCCCCeEEEecCChhHHHHHHHHHHHHHHHHHHHhcc------C------CCC--CccHHHHHHHHHHHHHHH-HHC--
Q 019978          263 FLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAAL------T------NES--ATSKSVYFAHCTSEMVVM-HGM--  325 (333)
Q Consensus       263 ll~~~~~~v~~s~Di~gve~~~alkNv~Ai~~Gi~~gl------~------~~~--~n~~~~l~~~~~~E~~~l-~~~--  325 (333)
                      ++.++++  ..++|+++++|.+   |++++..+++.+.      .      ++.  .+..+.++.++++|+..+ +++  
T Consensus       188 ~~~~~~~--~~~~di~~~~l~~---N~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~E~~~va~a~~~  262 (404)
T 3c7a_A          188 HGAEPVF--RLAKHFLEMLIMS---YSFVHPAILFGRWGSWDGKPVPEAPLFYQGIDQATADMLTACSNECKDVANAIMA  262 (404)
T ss_dssp             HCSSSEE--EECSCHHHHHHTT---CTTHHHHHHHHHHTTCCSCCBSSCCBSGGGCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCce--eEcCCEeeeeecC---CceeccHHHHHHHHhhhcCCCCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6654334  4799999999885   8877777777333      1      211  125679999999999999 899  


Q ss_pred             ---CCCC
Q 019978          326 ---GRSW  329 (333)
Q Consensus       326 ---G~~~  329 (333)
                         |.+.
T Consensus       263 ~~~G~~~  269 (404)
T 3c7a_A          263 ACPGNDL  269 (404)
T ss_dssp             HSTTCCC
T ss_pred             hcCCCCc
Confidence               9876

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.73  E-value=5.7e-17  Score=145.49  Aligned_cols=173  Identities=14%  Similarity=0.157  Sum_probs=130.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      .|||+|||+|+||+++|..|+++ |     ++|++|+|+++                                       
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~-g-----~~V~~~~~~~~---------------------------------------   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIA-G-----HEVTYYGSKDQ---------------------------------------   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECTTCC---------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCHH---------------------------------------
Confidence            47999999999999999999999 8     89999987642                                       


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc-
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE-  201 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~-  201 (333)
                                                        +++++|+||+++|++.++++++++.++++    +++++++++|++ 
T Consensus        54 ----------------------------------~~~~aD~vi~av~~~~~~~v~~~l~~~~~----~~~vi~~~~g~~~   95 (209)
T 2raf_A           54 ----------------------------------ATTLGEIVIMAVPYPALAALAKQYATQLK----GKIVVDITNPLNF   95 (209)
T ss_dssp             ----------------------------------CSSCCSEEEECSCHHHHHHHHHHTHHHHT----TSEEEECCCCBCT
T ss_pred             ----------------------------------HhccCCEEEEcCCcHHHHHHHHHHHHhcC----CCEEEEECCCCCc
Confidence                                              23578999999999999999999988775    478999999997 


Q ss_pred             ccc--cCCccCCCHHHHHHhHhCCCCCcEE----EEcCCCchHHHhcc-CceeEEEe-CChhhHHHHHHHhCCCCeEEEe
Q 019978          202 AEL--EAVPRIITPTQMINRATGVPIENIL----YLGGPNIASEIYNK-EYANARIC-GAEKWRKPLAKFLRRPHFTVWD  273 (333)
Q Consensus       202 ~~~--~~~~~~~~~se~i~~~lg~~~~~~~----vl~GP~~a~ev~~~-~~~~~~~~-~~~~~~~~l~~ll~~~~~~v~~  273 (333)
                      .+.  ...++...+++.+++.++.  ..+.    .++||+++.+...+ .++.+.++ .+++..+.++++|+..+++++.
T Consensus        96 ~~~~~l~~~~~~~~~~~l~~~l~~--~~vv~~~~~~~~p~~~~~~~~g~~~~~~~~~g~~~~~~~~v~~ll~~~G~~~~~  173 (209)
T 2raf_A           96 DTWDDLVVPADSSAAQELQQQLPD--SQVLKAFNTTFAATLQSGQVNGKEPTTVLVAGNDDSAKQRFTRALADSPLEVKD  173 (209)
T ss_dssp             TTSSSBSSCTTCCHHHHHHHHCTT--SEEEECSTTSCHHHHHHSEETTTEECEEEEEESCHHHHHHHHHHTTTSSCEEEE
T ss_pred             cccccccCCCCCcHHHHHHHHCCC--CcEEEeeecccHhhccccccCCCCCceeEEcCCCHHHHHHHHHHHHHcCCceEe
Confidence            320  0001234557888887752  2221    12388888766554 23333343 4457899999999999999988


Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHhccCCC
Q 019978          274 NGDLVTHEVMGGLKNVYAIGAGMVAALTNE  303 (333)
Q Consensus       274 s~Di~gve~~~alkNv~Ai~~Gi~~gl~~~  303 (333)
                      .+|   ++.+.++||+.++.+|++.+.+++
T Consensus       174 ~~~---i~~a~~~K~i~~l~~~~~~~~g~g  200 (209)
T 2raf_A          174 AGK---LKRARELEAMGFMQMTLAASEQIG  200 (209)
T ss_dssp             EES---GGGHHHHHHHHHHHHHHHHTTSSC
T ss_pred             CCC---HhHHHHhcchHHHHHHHHHHcCCC
Confidence            888   456778999999999999988873

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=99.70  E-value=4.4e-16  Score=154.38  Aligned_cols=221  Identities=16%  Similarity=0.104  Sum_probs=146.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|+||+++|..|++. |     ++|++|+++++++++++..+                 .+.+.+++.     
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~-G-----~~V~~~d~~~~~~~~l~~~~-----------------~~i~e~~l~-----   52 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSAR-G-----HEVIGVDVSSTKIDLINQGK-----------------SPIVEPGLE-----   52 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHTTC-----------------CSSCCTTHH-----
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHhCCC-----------------CCcCCCCHH-----
Confidence            7999999999999999999999 8     99999999988776543211                 222333221     


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh----------HHHHHHHHHhhhhccCCCCEE
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE----------TKEVFEEISRYWKERITVPVI  193 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~----------~~~vl~~i~~~l~~~~~~~~I  193 (333)
                            |++.++...       .++.+++++++++.++|+||+|||+..          ++++++++.+++++...+++|
T Consensus        53 ------~~~~~~~~~-------g~l~~t~~~~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iV  119 (436)
T 1mv8_A           53 ------ALLQQGRQT-------GRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTV  119 (436)
T ss_dssp             ------HHHHHHHHT-------TCEEEESCHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEE
T ss_pred             ------HHHHhhccc-------CceEEeCCHHHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEE
Confidence                  111110000       147888999888999999999999765          999999999988640003556


Q ss_pred             EEeeecCcccccCCccCCCHHHHHHhHhCCCC-CcEEEEcCCCchHHHhc----cCceeEEEeC-ChhhHHHHHHHhCCC
Q 019978          194 ISLAKGVEAELEAVPRIITPTQMINRATGVPI-ENILYLGGPNIASEIYN----KEYANARICG-AEKWRKPLAKFLRRP  267 (333)
Q Consensus       194 vs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~-~~~~vl~GP~~a~ev~~----~~~~~~~~~~-~~~~~~~l~~ll~~~  267 (333)
                      |..+ ++.+++    +.+.+.+.+.+..+... ..+.+.++|.++.+...    ..+..++++. +++..+.++++|+..
T Consensus       120 V~~S-tv~~g~----t~~~l~~~l~~~~g~~~~~~~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~  194 (436)
T 1mv8_A          120 VVRS-TVLPGT----VNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYREL  194 (436)
T ss_dssp             EECS-CCCTTH----HHHTHHHHHHHHHSCCBTTTBEEEECCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTS
T ss_pred             EEeC-CcCCCc----hHHHHHHHHHHhcCcccCCcEEEEECcccccccccchhccCCCEEEEEcCCHHHHHHHHHHHhcc
Confidence            5443 444431    13445566655444211 23567789988765432    2233344443 467788899999988


Q ss_pred             CeEEEecCChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCC
Q 019978          268 HFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSW  329 (333)
Q Consensus       268 ~~~v~~s~Di~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~  329 (333)
                      +.+++. .|+...||.+.+-|.+                  .++....++|+..+ +++|.+.
T Consensus       195 ~~~v~~-~~~~~ae~~Kl~~N~~------------------~a~~ia~~nE~~~l~~~~Gid~  238 (436)
T 1mv8_A          195 DAPIIR-KTVEVAEMIKYTCNVW------------------HAAKVTFANEIGNIAKAVGVDG  238 (436)
T ss_dssp             SSCEEE-EEHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHTTSCH
T ss_pred             CCCEEc-CCHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHhCCCH
Confidence            877776 8899999999988862                  23344566777777 6666653

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.70  E-value=5.2e-16  Score=145.34  Aligned_cols=154  Identities=19%  Similarity=0.243  Sum_probs=120.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCe---eEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV---LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~---~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      +|||+|||+|+||++++..|+++ |     +   +|++|+|++++++++..                             
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~-g-----~~~~~V~v~dr~~~~~~~l~~-----------------------------   47 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIAN-G-----YDPNRICVTNRSLDKLDFFKE-----------------------------   47 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHT-T-----CCGGGEEEECSSSHHHHHHHH-----------------------------
T ss_pred             CCEEEEEcccHHHHHHHHHHHHC-C-----CCCCeEEEEeCCHHHHHHHHH-----------------------------
Confidence            47999999999999999999999 8     6   89999999976543210                             


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhh-hhccCCCCEEEEeee
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAK  198 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~-l~~~~~~~~Ivs~~k  198 (333)
                           .                    ..+.++++..++++++|+||+|||++.++++++++.++ +++   +++|||+++
T Consensus        48 -----~--------------------~gi~~~~~~~~~~~~aDvVilav~p~~~~~vl~~l~~~~l~~---~~iiiS~~a   99 (280)
T 3tri_A           48 -----K--------------------CGVHTTQDNRQGALNADVVVLAVKPHQIKMVCEELKDILSET---KILVISLAV   99 (280)
T ss_dssp             -----T--------------------TCCEEESCHHHHHSSCSEEEECSCGGGHHHHHHHHHHHHHTT---TCEEEECCT
T ss_pred             -----H--------------------cCCEEeCChHHHHhcCCeEEEEeCHHHHHHHHHHHHhhccCC---CeEEEEecC
Confidence                 0                    03556778888899999999999999999999999998 876   679999999


Q ss_pred             cCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEe--CChhhHHHHHHHhCCCCeEEEec
Q 019978          199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN  274 (333)
Q Consensus       199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v~~s  274 (333)
                      |+..+            .+++.++.+ .+ .+...|+++..+..+.... +..  .+++..+.++.+|+..|..+++.
T Consensus       100 gi~~~------------~l~~~l~~~-~~-vvr~mPn~p~~v~~g~~~l-~~~~~~~~~~~~~v~~l~~~iG~~~~v~  162 (280)
T 3tri_A          100 GVTTP------------LIEKWLGKA-SR-IVRAMPNTPSSVRAGATGL-FANETVDKDQKNLAESIMRAVGLVIWVS  162 (280)
T ss_dssp             TCCHH------------HHHHHHTCC-SS-EEEEECCGGGGGTCEEEEE-ECCTTSCHHHHHHHHHHHGGGEEEEECS
T ss_pred             CCCHH------------HHHHHcCCC-Ce-EEEEecCChHHhcCccEEE-EeCCCCCHHHHHHHHHHHHHCCCeEEEC
Confidence            98864            367777642 22 4667899998776653322 222  34678899999999999877663

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=99.70  E-value=5.6e-16  Score=155.64  Aligned_cols=198  Identities=11%  Similarity=0.057  Sum_probs=140.9

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCc----chhhhhhhhHHHHHhhhhhHHHHhhhccc--cc
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGR----SVDRATAEHLFEVINSREDVLRRLIRRCA--YL  114 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~----~~~~~~~~~l~~~i~~~~~~~~~~~~~~~--~l  114 (333)
                      .+|||+|||+|+||+.+|..|+++.|     | +|++|+++++    ++++++         ++        +.+.  +.
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G-----~~~V~~~D~~~~~~~~kv~~l~---------~g--------~~~i~~~e   74 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPC-----FEKVLGFQRNSKSSGYKIEMLN---------RG--------ESPLKGEE   74 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTT-----CCEEEEECCCCTTTTTHHHHHT---------TT--------CCCSSCCG
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCC-----CCeEEEEECChhHhHHHHHHHH---------hc--------CCCccccC
Confidence            56899999999999999999998624     9 9999999998    766543         21        1223  33


Q ss_pred             chhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch------------hHHHHHHHHHh
Q 019978          115 KYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST------------ETKEVFEEISR  182 (333)
Q Consensus       115 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~------------~~~~vl~~i~~  182 (333)
                      +++.           |++.++..       ..++.+++| .+++.+||+||+|||+.            ++..+++.+.+
T Consensus        75 ~gl~-----------~l~~~~~~-------~g~l~~ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~  135 (478)
T 3g79_A           75 PGLE-----------ELIGKVVK-------AGKFECTPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGK  135 (478)
T ss_dssp             GGHH-----------HHHHHHHH-------TTCEEEESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHH
T ss_pred             CCHH-----------HHHHhhcc-------cCCeEEeCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHh
Confidence            3321           11111000       026888888 57889999999999875            37888899999


Q ss_pred             hhhccCCCCEEEEeeecCcccccCCccCCCHHH-HHHhHhCCC-CCcEEEEcCCCchHHHhc----cCceeEEEeCChhh
Q 019978          183 YWKERITVPVIISLAKGVEAELEAVPRIITPTQ-MINRATGVP-IENILYLGGPNIASEIYN----KEYANARICGAEKW  256 (333)
Q Consensus       183 ~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se-~i~~~lg~~-~~~~~vl~GP~~a~ev~~----~~~~~~~~~~~~~~  256 (333)
                      ++++   +++|| ..++++++     +.+.+.+ ++++..|.. ...+.++++|.+..+...    ..+..++.+.+++.
T Consensus       136 ~l~~---g~iVV-~~STv~pg-----tt~~v~~~ile~~~g~~~~~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~~~~  206 (478)
T 3g79_A          136 YLKP---GMLVV-LESTITPG-----TTEGMAKQILEEESGLKAGEDFALAHAPERVMVGRLLKNIREHDRIVGGIDEAS  206 (478)
T ss_dssp             HCCT---TCEEE-ECSCCCTT-----TTTTHHHHHHHHHHCCCBTTTBEEEECCCCCCTTSHHHHHHHSCEEEEESSHHH
T ss_pred             hcCC---CcEEE-EeCCCChH-----HHHHHHHHHHHHhcCCCcCCceeEEeCCccCCccchhhhhcCCcEEEEeCCHHH
Confidence            8887   66665 45688886     4566765 443556532 134778999998866442    12334555677788


Q ss_pred             HHHHHHHhCCC-CeEEEecCChhHHHHHHHHHHH
Q 019978          257 RKPLAKFLRRP-HFTVWDNGDLVTHEVMGGLKNV  289 (333)
Q Consensus       257 ~~~l~~ll~~~-~~~v~~s~Di~gve~~~alkNv  289 (333)
                      .+.++.+|+.. +..++...|+...|.+|.+.|.
T Consensus       207 ~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~  240 (478)
T 3g79_A          207 TKRAVELYSPVLTVGQVIPMSATAAEVTKTAENT  240 (478)
T ss_dssp             HHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHH
Confidence            89999999887 5667778899999999999987

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=99.68  E-value=2.3e-16  Score=150.58  Aligned_cols=223  Identities=14%  Similarity=0.131  Sum_probs=139.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +|||+|||+|+||+.+|..|++. |     ++|++|+|+++++++++.++                  ..++.+.     
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~~~------------------~~~~~~~-----   54 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALK-G-----QSVLAWDIDAQRIKEIQDRG------------------AIIAEGP-----   54 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHHT------------------SEEEESS-----
T ss_pred             cCeEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHHHHHhcC------------------CeEEecc-----
Confidence            48999999999999999999999 8     99999999987665432210                  1111110     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                        .++      .          ...+ .+++++++++.++|+||+|||++...++++++.+++++   +++||++ +|+.
T Consensus        55 --~~~------~----------~~~~~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~l~~~l~~---~~~vv~~-~~~~  112 (359)
T 1bg6_A           55 --GLA------G----------TAHPDLLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISE---GQLIILN-PGAT  112 (359)
T ss_dssp             --SCC------E----------EECCSEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCT---TCEEEES-SCCS
T ss_pred             --ccc------c----------ccccceecCCHHHHHhcCCEEEEeCCchHHHHHHHHHHHhCCC---CCEEEEc-CCCc
Confidence              000      0          0123 46678888888999999999999999999999998887   7778877 5544


Q ss_pred             ccccCCccCCCHHHHHHhHh-------CCCCCcEE-EEcCCCchHHHhc-cCceeEEE--eCChhhHHHHHHHhCCCCeE
Q 019978          202 AELEAVPRIITPTQMINRAT-------GVPIENIL-YLGGPNIASEIYN-KEYANARI--CGAEKWRKPLAKFLRRPHFT  270 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~l-------g~~~~~~~-vl~GP~~a~ev~~-~~~~~~~~--~~~~~~~~~l~~ll~~~~~~  270 (333)
                      .+.     .+ +.+.+.+..       +....++. .+.||+++..... +.......  +.+++..+.++++|..  ++
T Consensus       113 ~~~-----~~-~~~~l~~~~~~~v~~~~~~~~~~~~~~~gpg~v~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~--~~  184 (359)
T 1bg6_A          113 GGA-----LE-FRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGAMDFACLPAAKAGWALEQIGSVLPQ--YV  184 (359)
T ss_dssp             SHH-----HH-HHHHHHHTTCCCCEEEEESSCSEEEECSSTTEEEEEEECSCEEEEEESGGGHHHHHHHHTTTCTT--EE
T ss_pred             hHH-----HH-HHHHHHhcCCCCeEEEEecCCcEEEEeCCCCEEEEEEeecceEEEeccccccHHHHHHHHHHhhh--cE
Confidence            321     11 223333311       00012233 3467776542221 22221122  1233467788888854  43


Q ss_pred             EEecCChhHHHHHHHHHHHHHH--------HHHHHhc----cCCC--CCccHHHHHHHHHHHHHHH-HHCCCCCC
Q 019978          271 VWDNGDLVTHEVMGGLKNVYAI--------GAGMVAA----LTNE--SATSKSVYFAHCTSEMVVM-HGMGRSWQ  330 (333)
Q Consensus       271 v~~s~Di~gve~~~alkNv~Ai--------~~Gi~~g----l~~~--~~n~~~~l~~~~~~E~~~l-~~~G~~~~  330 (333)
                        .++|+    |++++||+.++        .+|..+.    +.++  ..+..+.++.++++|+..+ +++|.+.+
T Consensus       185 --~~~di----~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~va~a~G~~~~  253 (359)
T 1bg6_A          185 --AVENV----LHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGITPSVGSLAEKVDAERIAIAKAFDLNVP  253 (359)
T ss_dssp             --ECSCH----HHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHHHCCHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             --EcCCh----HhhhccCCCccccHHHHHhhhchhhcCCccchhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence              46775    88999887655        2333321    1110  0234579999999999999 99998763

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.68  E-value=9.8e-16  Score=140.21  Aligned_cols=162  Identities=17%  Similarity=0.107  Sum_probs=118.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|+||++++..|.++ |++.+ .+|++|+|++++++++..        .                        
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~-g~~~~-~~V~~~~r~~~~~~~~~~--------~------------------------   48 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINK-NIVSS-NQIICSDLNTANLKNASE--------K------------------------   48 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TSSCG-GGEEEECSCHHHHHHHHH--------H------------------------
T ss_pred             CeEEEECccHHHHHHHHHHHhC-CCCCC-CeEEEEeCCHHHHHHHHH--------H------------------------
Confidence            7999999999999999999999 81111 299999999876543210        0                        


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                                            ..+..+++++++++++|+||+|||++.++++++++.+++++   +++|||.++|+..+
T Consensus        49 ----------------------~g~~~~~~~~e~~~~aDvVilav~~~~~~~v~~~l~~~l~~---~~~vvs~~~gi~~~  103 (247)
T 3gt0_A           49 ----------------------YGLTTTTDNNEVAKNADILILSIKPDLYASIINEIKEIIKN---DAIIVTIAAGKSIE  103 (247)
T ss_dssp             ----------------------HCCEECSCHHHHHHHCSEEEECSCTTTHHHHC---CCSSCT---TCEEEECSCCSCHH
T ss_pred             ----------------------hCCEEeCChHHHHHhCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEecCCCCHH
Confidence                                  02445678888889999999999999999999999998876   78899999998864


Q ss_pred             ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE--eCChhhHHHHHHHhCCCCeEEEecCChhH
Q 019978          204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGDLVT  279 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~v~~s~Di~g  279 (333)
                                  .+++.++..  ...+...|+++..+..+... ++.  ..+++..+.++.+|+..|..++..++...
T Consensus       104 ------------~l~~~~~~~--~~~v~~~p~~p~~~~~g~~~-~~~~~~~~~~~~~~~~~l~~~~G~~~~~~e~~~d  166 (247)
T 3gt0_A          104 ------------STENAFNKK--VKVVRVMPNTPALVGEGMSA-LCPNEMVTEKDLEDVLNIFNSFGQTEIVSEKLMD  166 (247)
T ss_dssp             ------------HHHHHHCSC--CEEEEEECCGGGGGTCEEEE-EEECTTCCHHHHHHHHHHHGGGEEEEECCGGGHH
T ss_pred             ------------HHHHHhCCC--CcEEEEeCChHHHHcCceEE-EEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHHcc
Confidence                        366777532  23456789998877665322 222  24567889999999999887777665443

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.66  E-value=9.6e-16  Score=146.00  Aligned_cols=165  Identities=14%  Similarity=0.135  Sum_probs=121.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc--chhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR--SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~--~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      +|||+|||+|+||++||..|+++ |.+.+ ++|++|+|+++  ++++++         +                     
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~-G~~~~-~~V~v~~r~~~~~~~~~l~---------~---------------------   69 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAA-GVLAA-HKIMASSPDMDLATVSALR---------K---------------------   69 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHT-TSSCG-GGEEEECSCTTSHHHHHHH---------H---------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCCCc-ceEEEECCCccHHHHHHHH---------H---------------------
Confidence            47999999999999999999998 73222 68999999985  433211         0                     


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                               ..+.++++..++++++|+||+|||++.++++++++.+.+++   +++||++++|+
T Consensus        70 -------------------------~G~~~~~~~~e~~~~aDvVilav~~~~~~~vl~~l~~~l~~---~~ivvs~s~gi  121 (322)
T 2izz_A           70 -------------------------MGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIED---RHIVVSCAAGV  121 (322)
T ss_dssp             -------------------------HTCEEESCHHHHHHHCSEEEECSCGGGHHHHHHHHGGGCCT---TCEEEECCTTC
T ss_pred             -------------------------cCCEEeCChHHHhccCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEeCCCC
Confidence                                     02445567778888999999999999999999999988876   78999999998


Q ss_pred             cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCC---hhhHHHHHHHhCCCCeEEEecCCh
Q 019978          201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGA---EKWRKPLAKFLRRPHFTVWDNGDL  277 (333)
Q Consensus       201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~---~~~~~~l~~ll~~~~~~v~~s~Di  277 (333)
                      ...        .+.+.+.+.++.  . ..+...|+++.++..+.  .++..++   ++..+.++++|+..|+.++..+|+
T Consensus       122 ~~~--------~l~~~l~~~~~~--~-~vv~~~p~~p~~~~~g~--~v~~~g~~~~~~~~~~v~~ll~~~G~~~~~~e~~  188 (322)
T 2izz_A          122 TIS--------SIEKKLSAFRPA--P-RVIRCMTNTPVVVREGA--TVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDL  188 (322)
T ss_dssp             CHH--------HHHHHHHTTSSC--C-EEEEEECCGGGGGTCEE--EEEEECTTCCHHHHHHHHHHHHTTEEEEECCGGG
T ss_pred             CHH--------HHHHHHhhcCCC--C-eEEEEeCCcHHHHcCCe--EEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHH
Confidence            754        123334333321  2 34667899888776653  2223333   567889999999999999888877


Q ss_pred             hHH
Q 019978          278 VTH  280 (333)
Q Consensus       278 ~gv  280 (333)
                      ...
T Consensus       189 ~~~  191 (322)
T 2izz_A          189 IDA  191 (322)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.65  E-value=1.7e-15  Score=141.46  Aligned_cols=170  Identities=18%  Similarity=0.181  Sum_probs=119.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|.||..++..|++. |     ++|.+|+|++++++++..                                 
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~~~~~~~~~~~~---------------------------------   46 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKA-G-----YSLVVSDRNPEAIADVIA---------------------------------   46 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHH---------------------------------
T ss_pred             ceEEEECchHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHHHHHH---------------------------------
Confidence            6999999999999999999998 8     899999999865442110                                 


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-chhHHHHH---HHHHhhhhccCCCCEEEEeeec
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVF---EEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVp-s~~~~~vl---~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                            ..+...++++++++++|+||+++| +..++.++   +++.+.+++   +++||++++|
T Consensus        47 ----------------------~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~---~~~vv~~s~~  101 (299)
T 1vpd_A           47 ----------------------AGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKP---GTVLIDMSSI  101 (299)
T ss_dssp             ----------------------TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCT---TCEEEECSCC
T ss_pred             ----------------------CCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchHhhcCCC---CCEEEECCCC
Confidence                                  023445678788889999999999 56788888   678888876   7888998887


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHh-ccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCChh
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY-NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLV  278 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~-~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di~  278 (333)
                      ....          .+.+.+.++..  .+.++..|....... ......++.+++++..+.++++|+..+++++..+|.-
T Consensus       102 ~~~~----------~~~l~~~~~~~--g~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~~~~~~~  169 (299)
T 1vpd_A          102 APLA----------SREISDALKAK--GVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIG  169 (299)
T ss_dssp             CHHH----------HHHHHHHHHTT--TCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEEEEESTT
T ss_pred             CHHH----------HHHHHHHHHHc--CCeEEEecCCCCHhHHhcCCEEEEeCCCHHHHHHHHHHHHHHcCCeEEeCCcC
Confidence            6532          12344444321  122333444332211 1112223345677788999999999999998888877


Q ss_pred             HHHHHHHHHHH
Q 019978          279 THEVMGGLKNV  289 (333)
Q Consensus       279 gve~~~alkNv  289 (333)
                      ...|.+.+.|.
T Consensus       170 ~~~~~Kl~~n~  180 (299)
T 1vpd_A          170 AGNVTKLANQV  180 (299)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77888877775

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=99.65  E-value=1e-15  Score=153.82  Aligned_cols=220  Identities=13%  Similarity=0.103  Sum_probs=146.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +|||+|||+|+||+.+|..|+++ |   .+++|++|++++++++.++.         +.        .+.+.+++.    
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~-g---~g~~V~~~D~~~~~v~~l~~---------g~--------~~i~e~gl~----   63 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHK-C---PHITVTVVDMNTAKIAEWNS---------DK--------LPIYEPGLD----   63 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHH-C---TTSEEEEECSCHHHHHHHTS---------SS--------CSSCCTTHH----
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc-C---CCCEEEEEECCHHHHHHHHC---------CC--------CCcCCCCHH----
Confidence            57999999999999999999987 3   12799999999987765432         10        122222211    


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch---------------hHHHHHHHHHhhhhcc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST---------------ETKEVFEEISRYWKER  187 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~---------------~~~~vl~~i~~~l~~~  187 (333)
                             |++.++.        ..++.+++|+++++.++|+||+|||+.               .+.++++++.+++++ 
T Consensus        64 -------~~~~~~~--------~~~l~~t~~~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~-  127 (481)
T 2o3j_A           64 -------EIVFAAR--------GRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGG-  127 (481)
T ss_dssp             -------HHHHHHB--------TTTEEEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCS-
T ss_pred             -------HHHHHhh--------cCCEEEECCHHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCC-
Confidence                   1111100        015788899888889999999998763               489999999999887 


Q ss_pred             CCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCC-CCCcEEEEcCCCchHHHhc----cCceeEEEeCCh-----hhH
Q 019978          188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGV-PIENILYLGGPNIASEIYN----KEYANARICGAE-----KWR  257 (333)
Q Consensus       188 ~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~-~~~~~~vl~GP~~a~ev~~----~~~~~~~~~~~~-----~~~  257 (333)
                        +++||..+ ++.+++     .+.+.+.+.+..+. ....+.+.++|.++.+...    ..+..++++++.     +..
T Consensus       128 --g~iVV~~S-Tv~~gt-----~~~l~~~l~~~~~~~~~~d~~v~~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~  199 (481)
T 2o3j_A          128 --PKIVVEKS-TVPVKA-----AESIGCILREAQKNNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAV  199 (481)
T ss_dssp             --CEEEEECS-CCCTTH-----HHHHHHHHHHHTC----CCEEEEECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHH
T ss_pred             --CCEEEECC-CCCCCH-----HHHHHHHHHHhhCcCcCCceEEEeCcccccccchhhcccCCCEEEEEecCchhhHHHH
Confidence              66666433 555542     23344555542221 1133567899998765431    123334443322     467


Q ss_pred             HHHHHHhCCCCe-EEEecCChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCC
Q 019978          258 KPLAKFLRRPHF-TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSW  329 (333)
Q Consensus       258 ~~l~~ll~~~~~-~v~~s~Di~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~  329 (333)
                      +.++.+|+..+. .++...|+...||.|.+.|.+                  .++....++|+..+ +++|.+.
T Consensus       200 ~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~------------------~a~~ia~~nE~~~la~~~Gid~  255 (481)
T 2o3j_A          200 AELVRIYENWVPRNRIITTNTWSSELSKLVANAF------------------LAQRISSINSISAVCEATGAEI  255 (481)
T ss_dssp             HHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHSCCH
T ss_pred             HHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHhCcCH
Confidence            888899988774 667788999999999988873                  45556678888888 7887764

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.65  E-value=8.5e-16  Score=143.49  Aligned_cols=171  Identities=14%  Similarity=0.095  Sum_probs=119.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      ||||+|||+|.||+++|..|++. |     |+|++|+|++++++++..                                
T Consensus         1 M~~I~iiG~G~mG~~~a~~l~~~-G-----~~V~~~dr~~~~~~~~~~--------------------------------   42 (287)
T 3pdu_A            1 MTTYGFLGLGIMGGPMAANLVRA-G-----FDVTVWNRNPAKCAPLVA--------------------------------   42 (287)
T ss_dssp             CCCEEEECCSTTHHHHHHHHHHH-T-----CCEEEECSSGGGGHHHHH--------------------------------
T ss_pred             CCeEEEEccCHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHH--------------------------------
Confidence            47999999999999999999999 8     999999999987653211                                


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH---HHHHhhhhccCCCCEEEEeee
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF---EEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl---~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                             ..+..+++++++++++|+||++||+. .+++++   +.+.+.+++   +++||.++.
T Consensus        43 -----------------------~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l~~~l~~---g~~vv~~st   96 (287)
T 3pdu_A           43 -----------------------LGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGVLEGIGG---GRGYIDMST   96 (287)
T ss_dssp             -----------------------HTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGTCCT---TCEEEECSC
T ss_pred             -----------------------CCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhhhhcccC---CCEEEECCC
Confidence                                   02445678888899999999999986 889998   788887766   678887764


Q ss_pred             cCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH--HhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCC
Q 019978          199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD  276 (333)
Q Consensus       199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e--v~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~D  276 (333)
                      +-...      .+.+.+.+.+ .|     ..++.+|.+...  ...+.. .++++++++..+.++.+|+..+.++....+
T Consensus        97 ~~~~~------~~~~~~~~~~-~g-----~~~~~~pv~g~~~~a~~g~l-~~~~gg~~~~~~~~~~ll~~~g~~~~~~g~  163 (287)
T 3pdu_A           97 VDDET------STAIGAAVTA-RG-----GRFLEAPVSGTKKPAEDGTL-IILAAGDQSLFTDAGPAFAALGKKCLHLGE  163 (287)
T ss_dssp             CCHHH------HHHHHHHHHH-TT-----CEEEECCEECCHHHHHHTCE-EEEEEECHHHHHHTHHHHHHHEEEEEECSS
T ss_pred             CCHHH------HHHHHHHHHH-cC-----CEEEECCccCCHHHHhcCCE-EEEEeCCHHHHHHHHHHHHHhCCCEEEcCC
Confidence            32221      1122222222 12     223344543222  222322 234566778889999999988888887777


Q ss_pred             hhHHHHHHHHHHHH
Q 019978          277 LVTHEVMGGLKNVY  290 (333)
Q Consensus       277 i~gve~~~alkNv~  290 (333)
                      .-..++.+...|.+
T Consensus       164 ~g~~~~~Kl~~N~~  177 (287)
T 3pdu_A          164 VGQGARMKLVVNMI  177 (287)
T ss_dssp             TTHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHH
Confidence            66678888887863

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.65  E-value=2.1e-16  Score=146.77  Aligned_cols=179  Identities=16%  Similarity=0.109  Sum_probs=119.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCe--eEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~--~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ||||+|||+|+||+++|..|++. |     +  +|++|+|++++++.+.         +              . +.   
T Consensus         1 m~~I~iIG~G~mG~~~a~~l~~~-g-----~~~~V~~~d~~~~~~~~~~---------~--------------~-g~---   47 (281)
T 2g5c_A            1 MQNVLIVGVGFMGGSFAKSLRRS-G-----FKGKIYGYDINPESISKAV---------D--------------L-GI---   47 (281)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHT-T-----CCSEEEEECSCHHHHHHHH---------H--------------T-TS---
T ss_pred             CcEEEEEecCHHHHHHHHHHHhc-C-----CCcEEEEEeCCHHHHHHHH---------H--------------C-CC---
Confidence            47999999999999999999998 8     7  8999999986543211         0              0 00   


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc-CCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW-DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~-~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                                ....+++++++++ ++|+||+|||++.+.++++++.+++++   +++|+.++++
T Consensus        48 --------------------------~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~l~~~l~~---~~iv~~~~~~   98 (281)
T 2g5c_A           48 --------------------------IDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSE---DATVTDQGSV   98 (281)
T ss_dssp             --------------------------CSEEESCGGGGGGTCCSEEEECSCHHHHHHHHHHHHHHSCT---TCEEEECCSC
T ss_pred             --------------------------cccccCCHHHHhcCCCCEEEEcCCHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence                                      1123466777788 999999999999999999999988876   6766665433


Q ss_pred             CcccccCCccCCCHHHHHHhHhCC---CCCcEE--EEcCCCchH-HHhccCceeEEE--eCChhhHHHHHHHhCCCCeEE
Q 019978          200 VEAELEAVPRIITPTQMINRATGV---PIENIL--YLGGPNIAS-EIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTV  271 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~---~~~~~~--vl~GP~~a~-ev~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~v  271 (333)
                       ...         ..+.+.+.++.   +.+++.  ..+||.++. ++..+.++.++.  +.+++..+.++++|+..++++
T Consensus        99 -~~~---------~~~~l~~~l~~~~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~  168 (281)
T 2g5c_A           99 -KGK---------LVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVV  168 (281)
T ss_dssp             -CTH---------HHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEE
T ss_pred             -cHH---------HHHHHHHhccccceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCCHHHHHHHHHHHHHcCCEE
Confidence             221         11233443321   111211  223566654 334554443332  345678899999999999999


Q ss_pred             EecCChhH---HHHHHHHHHHHHHH
Q 019978          272 WDNGDLVT---HEVMGGLKNVYAIG  293 (333)
Q Consensus       272 ~~s~Di~g---ve~~~alkNv~Ai~  293 (333)
                      +..++...   +.+++.+.++++.+
T Consensus       169 ~~~~~~~~d~~~~~~~~~~~~~a~~  193 (281)
T 2g5c_A          169 EYMSPELHDYVFGVVSHLPHAVAFA  193 (281)
T ss_dssp             EECCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             EEcCHHHHHHHHHHHHHHHHHHHHH
Confidence            88887776   45666677765443

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=99.65  E-value=2.1e-15  Score=136.08  Aligned_cols=170  Identities=14%  Similarity=0.161  Sum_probs=122.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEE-EecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRI-WRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l-~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      +|||+|||+|+||+++|..|+++ |     ++|++ |+|++++++++..+                      +       
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~-g-----~~V~~v~~r~~~~~~~l~~~----------------------~-------   67 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAA-Q-----IPAIIANSRGPASLSSVTDR----------------------F-------   67 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHT-T-----CCEEEECTTCGGGGHHHHHH----------------------H-------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECCCHHHHHHHHHH----------------------h-------
Confidence            48999999999999999999999 8     89999 99998876542210                      0       


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                               .+..+.+..+++.++|+||+|||++.+.++++++.+ ++    +++||++++|++
T Consensus        68 -------------------------g~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~l~~-~~----~~ivi~~~~g~~  117 (220)
T 4huj_A           68 -------------------------GASVKAVELKDALQADVVILAVPYDSIADIVTQVSD-WG----GQIVVDASNAID  117 (220)
T ss_dssp             -------------------------TTTEEECCHHHHTTSSEEEEESCGGGHHHHHTTCSC-CT----TCEEEECCCCBC
T ss_pred             -------------------------CCCcccChHHHHhcCCEEEEeCChHHHHHHHHHhhc-cC----CCEEEEcCCCCC
Confidence                                     011122334557899999999999999999999877 43    579999999996


Q ss_pred             ccccCC--ccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCc------eeEEE-eCChhhHHHHHHHhCCCCeEEE
Q 019978          202 AELEAV--PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEY------ANARI-CGAEKWRKPLAKFLRRPHFTVW  272 (333)
Q Consensus       202 ~~~~~~--~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~------~~~~~-~~~~~~~~~l~~ll~~~~~~v~  272 (333)
                      ......  .+.....+.+++.++.  . ..+...|+.+..+....+      ..++. +.+++..+.++++|+..+++++
T Consensus       118 ~~~~~~~~~~~~~~~~~l~~~l~~--~-~vv~~~~~~~~~v~~~g~~~~~~~~~v~~~g~~~~~~~~v~~l~~~~G~~~~  194 (220)
T 4huj_A          118 FPAFKPRDLGGRLSTEIVSELVPG--A-KVVKAFNTLPAAVLAADPDKGTGSRVLFLSGNHSDANRQVAELISSLGFAPV  194 (220)
T ss_dssp             TTTCCBCCCTTCCHHHHHHHHSTT--C-EEEEESCSSCHHHHTSCSBCSSCEEEEEEEESCHHHHHHHHHHHHHTTCEEE
T ss_pred             cccccccccCCCcHHHHHHHHCCC--C-CEEECCCCCCHHHhhhCcccCCCCeeEEEeCCCHHHHHHHHHHHHHhCCCeE
Confidence            110000  0234567888888862  2 346677888776665222      22333 4566789999999999999999


Q ss_pred             ecCChhHH
Q 019978          273 DNGDLVTH  280 (333)
Q Consensus       273 ~s~Di~gv  280 (333)
                      ...++...
T Consensus       195 ~~G~l~~a  202 (220)
T 4huj_A          195 DLGTLAAS  202 (220)
T ss_dssp             ECCSHHHH
T ss_pred             eeCChhhc
Confidence            88887654

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=99.64  E-value=1.4e-15  Score=149.38  Aligned_cols=205  Identities=15%  Similarity=0.071  Sum_probs=137.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|+||+.+|..|++  |     |+|++|+|+++++++++..+.                 +.+.++..     
T Consensus         1 MkI~VIG~G~vG~~~A~~La~--G-----~~V~~~d~~~~~~~~l~~~~~-----------------~i~e~~l~-----   51 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL--Q-----NEVTIVDILPSKVDKINNGLS-----------------PIQDEYIE-----   51 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT--T-----SEEEEECSCHHHHHHHHTTCC-----------------SSCCHHHH-----
T ss_pred             CEEEEECCCHHHHHHHHHHhC--C-----CEEEEEECCHHHHHHHHcCCC-----------------CcCCCCHH-----
Confidence            799999999999999999986  5     899999999887765432110                 11111110     


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-----------hHHHHHHHHHhhhhccCCCCE
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----------ETKEVFEEISRYWKERITVPV  192 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-----------~~~~vl~~i~~~l~~~~~~~~  192 (333)
                            |++.+.         ..++.++++++++++++|+||+|||+.           .++++++.+.+ +++   +++
T Consensus        52 ------~~~~~~---------~~~l~~t~~~~~~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~---~~i  112 (402)
T 1dlj_A           52 ------YYLKSK---------QLSIKATLDSKAAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNS---HAT  112 (402)
T ss_dssp             ------HHHHHS---------CCCEEEESCHHHHHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCS---SCE
T ss_pred             ------HHHHhc---------cCcEEEeCCHHHHhcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCC---CCE
Confidence                  111110         014678889888889999999999987           69999999999 876   677


Q ss_pred             EEE-eeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhc----cCceeEEEeCCh-------hhHHHH
Q 019978          193 IIS-LAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGAE-------KWRKPL  260 (333)
Q Consensus       193 Ivs-~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~----~~~~~~~~~~~~-------~~~~~l  260 (333)
                      ||. .+++....           +.+.+.++..    .++++|.+..+...    ..+..+++++++       +.++.+
T Consensus       113 VV~~ST~~~g~~-----------~~l~~~~~~~----~v~~~Pe~~~~G~a~~~~~~~~riviG~~~~~~~~~~~~~~~~  177 (402)
T 1dlj_A          113 LIIKSTIPIGFI-----------TEMRQKFQTD----RIIFSPEFLRESKALYDNLYPSRIIVSCEENDSPKVKADAEKF  177 (402)
T ss_dssp             EEECSCCCTTHH-----------HHHHHHTTCS----CEEECCCCCCTTSTTHHHHSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEeCCCCccHH-----------HHHHHHhCCC----eEEECCccccCcchhhcccCCCEEEEeCCCcccchhHHHHHHH
Confidence            765 45554432           4455666532    35678887654321    112234444443       567888


Q ss_pred             HHHhCCCCeE---EEecCChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCC
Q 019978          261 AKFLRRPHFT---VWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSW  329 (333)
Q Consensus       261 ~~ll~~~~~~---v~~s~Di~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~  329 (333)
                      .++|...+++   ++...|+...||.+.+.|.+                  .++....++|+..+ +++|.+.
T Consensus       178 ~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~------------------~a~~ia~~nE~~~l~~~~Gid~  232 (402)
T 1dlj_A          178 ALLLKSAAKKNNVPVLIMGASEAEAVKLFANTY------------------LALRVAYFNELDTYAESRKLNS  232 (402)
T ss_dssp             HHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHhhhhccCCceEEecChHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHhCCCH
Confidence            8888765554   46677899999999999974                  22334456777777 7777654

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=99.63  E-value=3e-15  Score=148.56  Aligned_cols=193  Identities=15%  Similarity=0.084  Sum_probs=134.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -.|.+|||+|+||+.+|..|+++ |     |+|++|++++++++.++.         +        +.+.+.+++.    
T Consensus        11 ~~~~~ViGlGyvGlp~A~~La~~-G-----~~V~~~D~~~~kv~~L~~---------g--------~~pi~epgl~----   63 (431)
T 3ojo_A           11 GSKLTVVGLGYIGLPTSIMFAKH-G-----VDVLGVDINQQTIDKLQN---------G--------QISIEEPGLQ----   63 (431)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHT---------T--------CCSSCCTTHH----
T ss_pred             CCccEEEeeCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHC---------C--------CCCcCCCCHH----
Confidence            36999999999999999999999 8     999999999998876542         2        2345555432    


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh------------HHHHHHHHHhhhhccCCC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE------------TKEVFEEISRYWKERITV  190 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~------------~~~vl~~i~~~l~~~~~~  190 (333)
                             |++.+.+.-       .++.+++|+    ++||+||+|||+..            +..+.+.+.+++++   +
T Consensus        64 -------~ll~~~~~~-------g~l~~ttd~----~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~---g  122 (431)
T 3ojo_A           64 -------EVYEEVLSS-------GKLKVSTTP----EASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKK---G  122 (431)
T ss_dssp             -------HHHHHHHHT-------TCEEEESSC----CCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCT---T
T ss_pred             -------HHHHhhccc-------CceEEeCch----hhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCC---C
Confidence                   222211100       257888873    48999999999754            78888999998887   5


Q ss_pred             CEEEEeeecCcccccCCccCCCHHHHHHhHhCCC-CCcEEEEcCCCchHHHhc----cCceeEEEeCChhhHHHHHHHhC
Q 019978          191 PVIISLAKGVEAELEAVPRIITPTQMINRATGVP-IENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLR  265 (333)
Q Consensus       191 ~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~-~~~~~vl~GP~~a~ev~~----~~~~~~~~~~~~~~~~~l~~ll~  265 (333)
                      ++|| ..+++++++     .+.+.+.+.+..|.. ...+.++++|.+..+...    ..+..++.+.+++..+.++.+|+
T Consensus       123 ~iVV-~~STV~pgt-----t~~v~~~i~e~~g~~~~~d~~v~~~Pe~~~~G~A~~~~~~p~~Iv~G~~~~~~~~~~~ly~  196 (431)
T 3ojo_A          123 NTII-VESTIAPKT-----MDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILEELVHNNRIIGGVTKACIEAGKRVYR  196 (431)
T ss_dssp             EEEE-ECSCCCTTH-----HHHTHHHHHHTTTCCBTTTEEEEECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHT
T ss_pred             CEEE-EecCCChhH-----HHHHHHHHHHHcCCCcCCCeEEEECCCcCCCcchhhcccCCCEEEEeCCHHHHHHHHHHHH
Confidence            6555 555888763     344444444444421 234789999988665431    12444555667788999999998


Q ss_pred             CCCeEEEecCChhHHHHHHHHHHH
Q 019978          266 RPHFTVWDNGDLVTHEVMGGLKNV  289 (333)
Q Consensus       266 ~~~~~v~~s~Di~gve~~~alkNv  289 (333)
                      ..+-......|+...|.++..-|.
T Consensus       197 ~~~~~~~~~~~~~~AE~~Kl~~N~  220 (431)
T 3ojo_A          197 TFVQGEMIETDARTAEMSKLMENT  220 (431)
T ss_dssp             TTCCSCEEEEEHHHHHHHHHHHHH
T ss_pred             HHhCCcEEeCCHHHHHHHHHHHHH
Confidence            765434444788889999988886

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.63  E-value=3.2e-15  Score=139.61  Aligned_cols=172  Identities=15%  Similarity=0.098  Sum_probs=119.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|.||+++|..|++. |     ++|++|+|++++++++..                                 
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~-G-----~~V~~~dr~~~~~~~~~~---------------------------------   42 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKA-G-----CSVTIWNRSPEKAEELAA---------------------------------   42 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSGGGGHHHHH---------------------------------
T ss_pred             CEEEEEeecHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHH---------------------------------
Confidence            7999999999999999999999 8     999999999886643210                                 


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-chhHHHHH---HHHHhhhhccCCCCEEEEeeec
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVF---EEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVp-s~~~~~vl---~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                            ..+..+++++++++++|+||+||| +..+++++   +++.+.+++   +++||+++ +
T Consensus        43 ----------------------~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~---~~~vi~~s-t   96 (287)
T 3pef_A           43 ----------------------LGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGE---GRGYVDMS-T   96 (287)
T ss_dssp             ----------------------TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCT---TCEEEECS-C
T ss_pred             ----------------------CCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchHhhcCCC---CCEEEeCC-C
Confidence                                  034566788898999999999999 56899999   888888876   67777764 4


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCChhH
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT  279 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di~g  279 (333)
                      ..+.+     .+.+.+.+.+ .+.......+..+|..+   ..+ ....+++++++..+.++.+|+..+.+++...+.-.
T Consensus        97 ~~~~~-----~~~~~~~~~~-~g~~~~~~pv~g~~~~a---~~g-~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~g~~g~  166 (287)
T 3pef_A           97 VDPAT-----SQRIGVAVVA-KGGRFLEAPVSGSKKPA---EDG-TLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGK  166 (287)
T ss_dssp             CCHHH-----HHHHHHHHHH-TTCEEEECCEECCHHHH---HHT-CEEEEEEECHHHHHHHHHHHHHHEEEEEECSSTTH
T ss_pred             CCHHH-----HHHHHHHHHH-hCCEEEECCCcCCHHHH---hcC-CEEEEEeCCHHHHHHHHHHHHHhCCCeEEeCCCCH
Confidence            44331     1222222322 12110001133344333   122 22234566778889999999988888888777766


Q ss_pred             HHHHHHHHHHH
Q 019978          280 HEVMGGLKNVY  290 (333)
Q Consensus       280 ve~~~alkNv~  290 (333)
                      .++.+...|.+
T Consensus       167 ~~~~Kl~~N~~  177 (287)
T 3pef_A          167 GAEMKLVVNMV  177 (287)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            78888888874

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.62  E-value=2.2e-15  Score=138.10  Aligned_cols=194  Identities=13%  Similarity=0.119  Sum_probs=123.3

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc--hhhhhhhhHHHHHhhhhhHHHHhhhcccccchhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS--VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE  118 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~--~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~  118 (333)
                      -..|||+|||+|+||+++|..|+++ |     ++|++|+|++++  .+....+     +.           +. ....+.
T Consensus        17 ~~~~kIgiIG~G~mG~alA~~L~~~-G-----~~V~~~~r~~~~~~~~~~~~~-----~~-----------~~-~~~~~~   73 (245)
T 3dtt_A           17 FQGMKIAVLGTGTVGRTMAGALADL-G-----HEVTIGTRDPKATLARAEPDA-----MG-----------AP-PFSQWL   73 (245)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHTCC-----------------------C-CHHHHG
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCChhhhhhhhhhhh-----hc-----------ch-hhhHHH
Confidence            3458999999999999999999999 8     999999999875  2211000     00           00 000000


Q ss_pred             hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHH-HhhhhccCCCCEEEEee
Q 019978          119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEI-SRYWKERITVPVIISLA  197 (333)
Q Consensus       119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i-~~~l~~~~~~~~Ivs~~  197 (333)
                          + .+                   ... ..++++++++++|+||++||++...+++.++ .+.+ +   +++||+++
T Consensus        74 ----~-~~-------------------~~~-~~~~~~e~~~~aDvVilavp~~~~~~~~~~i~~~~l-~---g~ivi~~s  124 (245)
T 3dtt_A           74 ----P-EH-------------------PHV-HLAAFADVAAGAELVVNATEGASSIAALTAAGAENL-A---GKILVDIA  124 (245)
T ss_dssp             ----G-GS-------------------TTC-EEEEHHHHHHHCSEEEECSCGGGHHHHHHHHCHHHH-T---TSEEEECC
T ss_pred             ----h-hc-------------------Cce-eccCHHHHHhcCCEEEEccCcHHHHHHHHHhhhhhc-C---CCEEEECC
Confidence                0 00                   012 3456778889999999999999999999998 7777 4   68999999


Q ss_pred             ecCccc-----ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccC------ceeEEEeC-ChhhHHHHHHHhC
Q 019978          198 KGVEAE-----LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKE------YANARICG-AEKWRKPLAKFLR  265 (333)
Q Consensus       198 kGi~~~-----~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~------~~~~~~~~-~~~~~~~l~~ll~  265 (333)
                      +|+...     +....+...+++.+++.++.  . -.+...|+....+..+.      +..+++++ +++..+.++.+|+
T Consensus       125 ~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~--~-~vv~~~~~~~a~v~~~~~~a~~g~~~~~v~g~d~~~~~~v~~ll~  201 (245)
T 3dtt_A          125 NPLDFSHGMPPTLNPVNTDSLGEQIQRTFPE--A-KVVKTLNTMNASLMVDPGRAAGGDHSVFVSGNDAAAKAEVATLLK  201 (245)
T ss_dssp             CCEECTTCSSCEESSCSSCCHHHHHHHHSTT--S-EEEECSTTSCHHHHHCGGGTGGGCCCEEEECSCHHHHHHHHHHHH
T ss_pred             CCCCCcCCccccccCCCCccHHHHHHHHCCC--C-eEEEeecccCHHHhcCccccCCCCeeEEEECCCHHHHHHHHHHHH
Confidence            876311     00011345778889888863  2 23444555544443321      22234444 5688999999999


Q ss_pred             CCCeE-EEecCChhHHHHHHHHHHH
Q 019978          266 RPHFT-VWDNGDLVTHEVMGGLKNV  289 (333)
Q Consensus       266 ~~~~~-v~~s~Di~gve~~~alkNv  289 (333)
                      ..+++ +....++-.....+.+-|.
T Consensus       202 ~~g~~~~~~~G~~g~a~~~k~~~~~  226 (245)
T 3dtt_A          202 SLGHQDVIDLGDITTARGAEMLLPV  226 (245)
T ss_dssp             HTTCCCEEEEESGGGHHHHHTTHHH
T ss_pred             HcCCCceeccCcHHHHHHhhhhHHH
Confidence            99985 4555565444544444443

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.61  E-value=1.4e-14  Score=133.44  Aligned_cols=212  Identities=13%  Similarity=0.061  Sum_probs=135.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCee-EEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .|||+|||+|.||++++..|++. |     ++ |.+|+|++++++++..         .                     
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~-g-----~~~v~~~~~~~~~~~~~~~---------~---------------------   53 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRK-G-----FRIVQVYSRTEESARELAQ---------K---------------------   53 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHH-T-----CCEEEEECSSHHHHHHHHH---------H---------------------
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHC-C-----CeEEEEEeCCHHHHHHHHH---------H---------------------
Confidence            37999999999999999999999 8     88 8999999876543210         0                     


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                              ..+.++++++++++++|+||+++|++.+.++++++.+.+++   +++++++++|++
T Consensus        54 ------------------------~g~~~~~~~~~~~~~~Dvvi~av~~~~~~~v~~~l~~~~~~---~~ivv~~s~~~~  106 (266)
T 3d1l_A           54 ------------------------VEAEYTTDLAEVNPYAKLYIVSLKDSAFAELLQGIVEGKRE---EALMVHTAGSIP  106 (266)
T ss_dssp             ------------------------TTCEEESCGGGSCSCCSEEEECCCHHHHHHHHHHHHTTCCT---TCEEEECCTTSC
T ss_pred             ------------------------cCCceeCCHHHHhcCCCEEEEecCHHHHHHHHHHHHhhcCC---CcEEEECCCCCc
Confidence                                    02345567777788999999999999999999999888866   789999999988


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCC--CcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCChh-
Q 019978          202 AELEAVPRIITPTQMINRATGVPI--ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLV-  278 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~--~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di~-  278 (333)
                      .+.            +.+.++...  ++...++||...  ...+ ...++.+.+++..+.++++|+..+.+++..++.. 
T Consensus       107 ~~~------------l~~~~~~~~~~~~~~~~~g~~~~--~~~~-~~~~v~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~  171 (266)
T 3d1l_A          107 MNV------------WEGHVPHYGVFYPMQTFSKQREV--DFKE-IPFFIEASSTEDAAFLKAIASTLSNRVYDADSEQR  171 (266)
T ss_dssp             GGG------------STTTCSSEEEEEECCCC---CCC--CCTT-CCEEEEESSHHHHHHHHHHHHTTCSCEEECCHHHH
T ss_pred             hHH------------HHHHHHhccCcCCceecCCCchh--hcCC-CeEEEecCCHHHHHHHHHHHHhcCCcEEEeCHHHH
Confidence            652            233332100  011112232221  1222 2222235667788999999999998887766553 


Q ss_pred             --HHHHHHHHHHHH----HHHHHHHhccCCCCCccHHHHHHHHHHHHHHH---HHCCCCCCCCC
Q 019978          279 --THEVMGGLKNVY----AIGAGMVAALTNESATSKSVYFAHCTSEMVVM---HGMGRSWQKGD  333 (333)
Q Consensus       279 --gve~~~alkNv~----Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l---~~~G~~~~~~~  333 (333)
                        ...+.+..-|..    +++-.++...+. .......++...+.-+..+   .++-|+..+||
T Consensus       172 ~~~~~~~~l~~~~~~~~~~~~eal~~~~Gl-~~~~~~~l~~~~~~~~~~~~~~~~~~GP~~r~d  234 (266)
T 3d1l_A          172 KSLHLAAVFTCNFTNHMYALAAELLKKYNL-PFDVMLPLIDETARKVHELEPKTAQTGPAIRYD  234 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CGGGGHHHHHHHHHHHHHSCHHHHCCSTTTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcChhhhCCCCCccCC
Confidence              335555555543    223333333333 2223345555555544443   46777877777

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.61  E-value=7e-15  Score=138.82  Aligned_cols=170  Identities=14%  Similarity=0.098  Sum_probs=115.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +|||+|||+|.||+++|..|++. |     ++|++|+|++++++++..                                
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~-g-----~~V~~~~~~~~~~~~~~~--------------------------------   71 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKM-G-----HTVTVWNRTAEKCDLFIQ--------------------------------   71 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSGGGGHHHHH--------------------------------
T ss_pred             CCeEEEEcccHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHHHHHH--------------------------------
Confidence            58999999999999999999998 8     899999999876543210                                


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-chhHHHHHHHHH---hhhhccCCCCEEEEeee
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFEEIS---RYWKERITVPVIISLAK  198 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVp-s~~~~~vl~~i~---~~l~~~~~~~~Ivs~~k  198 (333)
                                             ..+...++++++++++|+||+||| +..+++++.++.   +.+.+   +++||++++
T Consensus        72 -----------------------~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~---~~~vv~~s~  125 (316)
T 2uyy_A           72 -----------------------EGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRP---GKCYVDMST  125 (316)
T ss_dssp             -----------------------TTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCT---TCEEEECSC
T ss_pred             -----------------------cCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhHhhcCCC---CCEEEECCC
Confidence                                   023345677788889999999999 788999988754   55555   678888876


Q ss_pred             cCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchH--HHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCC
Q 019978          199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS--EIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD  276 (333)
Q Consensus       199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~--ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~D  276 (333)
                      +....          .+.+.+.++.  ....++.+|.+..  ....+... .+++++++..+.++++|+..+++++..+|
T Consensus       126 ~~~~~----------~~~l~~~~~~--~~~~~v~~p~~g~~~~~~~g~~~-~~~~g~~~~~~~v~~ll~~~g~~~~~~~~  192 (316)
T 2uyy_A          126 VDADT----------VTELAQVIVS--RGGRFLEAPVSGNQQLSNDGMLV-ILAAGDRGLYEDCSSCFQAMGKTSFFLGE  192 (316)
T ss_dssp             CCHHH----------HHHHHHHHHH--TTCEEEECCEESCHHHHHHTCEE-EEEEECHHHHHHTHHHHHHHEEEEEECSS
T ss_pred             CCHHH----------HHHHHHHHHH--cCCEEEEcCccCChhHHhhCCEE-EEeCCCHHHHHHHHHHHHHhcCCEEEeCC
Confidence            43221          1223343321  1123455565432  22333222 23455667888999999998999988878


Q ss_pred             hhHHHHHHHHHHH
Q 019978          277 LVTHEVMGGLKNV  289 (333)
Q Consensus       277 i~gve~~~alkNv  289 (333)
                      +-...|.+...|.
T Consensus       193 ~~~~~~~K~~~n~  205 (316)
T 2uyy_A          193 VGNAAKMMLIVNM  205 (316)
T ss_dssp             TTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            6555565555554

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.61  E-value=5.6e-15  Score=139.02  Aligned_cols=170  Identities=11%  Similarity=0.090  Sum_probs=118.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +|||+|||+|.||+.+|..|+++ |     |+|++|+|++++++++..                                
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~-G-----~~V~~~dr~~~~~~~~~~--------------------------------   56 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEW-P-----GGVTVYDIRIEAMTPLAE--------------------------------   56 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTS-T-----TCEEEECSSTTTSHHHHH--------------------------------
T ss_pred             CCeEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHH--------------------------------
Confidence            47999999999999999999999 8     999999999987653210                                


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-hhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps-~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                             ..+..+++++++++ +|+||++||. ..++++++++.+.+++   +++||.++.. .
T Consensus        57 -----------------------~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~~~l~~~l~~---g~ivv~~st~-~  108 (296)
T 3qha_A           57 -----------------------AGATLADSVADVAA-ADLIHITVLDDAQVREVVGELAGHAKP---GTVIAIHSTI-S  108 (296)
T ss_dssp             -----------------------TTCEECSSHHHHTT-SSEEEECCSSHHHHHHHHHHHHTTCCT---TCEEEECSCC-C
T ss_pred             -----------------------CCCEEcCCHHHHHh-CCEEEEECCChHHHHHHHHHHHHhcCC---CCEEEEeCCC-C
Confidence                                   03456688989888 9999999995 5889999999988876   6778776543 2


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHH--hccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCChhH
Q 019978          202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI--YNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT  279 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev--~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di~g  279 (333)
                      +.+         .+.+.+.+..  ....++..|.+....  ..+ ....+++++++..+.++.+|+..+.+++...+.-.
T Consensus       109 ~~~---------~~~~~~~~~~--~g~~~~~~pv~g~~~~a~~g-~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~g~~g~  176 (296)
T 3qha_A          109 DTT---------AVELARDLKA--RDIHIVDAPVSGGAAAAARG-ELATMVGADREVYERIKPAFKHWAAVVIHAGEPGA  176 (296)
T ss_dssp             HHH---------HHHHHHHHGG--GTCEEEECCEESCHHHHHHT-CEEEEEECCHHHHHHHHHHHHHHEEEEEEEESTTH
T ss_pred             HHH---------HHHHHHHHHH--cCCEEEeCCCcCCHHHHhcC-CccEEecCCHHHHHHHHHHHHHHcCCeEEcCChhH
Confidence            221         1223333311  112233344332211  123 22234567778889999999988888877777666


Q ss_pred             HHHHHHHHHHH
Q 019978          280 HEVMGGLKNVY  290 (333)
Q Consensus       280 ve~~~alkNv~  290 (333)
                      .++.+...|.+
T Consensus       177 a~~~Kl~~N~~  187 (296)
T 3qha_A          177 GTRMKLARNML  187 (296)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            67888877763

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.61  E-value=4.7e-15  Score=148.27  Aligned_cols=220  Identities=13%  Similarity=0.110  Sum_probs=142.9

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .+|||+|||+|+||+.+|..|++. |   .+++|++|+|++++++.++.         +        ..+.+.+++.   
T Consensus         4 ~~mkI~VIG~G~mG~~lA~~La~~-g---~G~~V~~~d~~~~~~~~l~~---------g--------~~~i~e~~l~---   59 (467)
T 2q3e_A            4 EIKKICCIGAGYVGGPTCSVIAHM-C---PEIRVTVVDVNESRINAWNS---------P--------TLPIYEPGLK---   59 (467)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHH-C---TTSEEEEECSCHHHHHHHTS---------S--------SCSSCCTTHH---
T ss_pred             CccEEEEECCCHHHHHHHHHHHhc-C---CCCEEEEEECCHHHHHHHhC---------C--------CCCcCCCCHH---
Confidence            468999999999999999999987 4   12899999999887665432         1        1122323211   


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh---------------HHHHHHHHHhhhhc
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE---------------TKEVFEEISRYWKE  186 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~---------------~~~vl~~i~~~l~~  186 (333)
                              |++..+.        ..++.++++++++++++|+||+|||...               +.++++++.+++++
T Consensus        60 --------~~~~~~~--------~~~~~~t~~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~  123 (467)
T 2q3e_A           60 --------EVVESCR--------GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNG  123 (467)
T ss_dssp             --------HHHHHHB--------TTTEEEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCS
T ss_pred             --------HHHHHhh--------cCCEEEECCHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCC
Confidence                    1111100        0157788999888999999999998643               67888999988876


Q ss_pred             cCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhc----cCceeEEEeC-----ChhhH
Q 019978          187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICG-----AEKWR  257 (333)
Q Consensus       187 ~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~----~~~~~~~~~~-----~~~~~  257 (333)
                         +++||..+ .+.+++     .+.+.+.+.+. +.....+.+.++|.++.+...    ..+..+++++     +++..
T Consensus       124 ---g~iVV~~S-Tv~~g~-----~~~l~~~l~~~-~~~~~d~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~  193 (467)
T 2q3e_A          124 ---YKIVTEKS-TVPVRA-----AESIRRIFDAN-TKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAV  193 (467)
T ss_dssp             ---EEEEEECS-CCCTTH-----HHHHHHHHHHT-CCTTCEEEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHH
T ss_pred             ---CCEEEECC-cCCchH-----HHHHHHHHHHh-CCCCCCeEEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHH
Confidence               56665543 344431     22234444442 111234567889998764332    1233344444     45678


Q ss_pred             HHHHHHhCCC-CeEEEecCChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCC
Q 019978          258 KPLAKFLRRP-HFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSW  329 (333)
Q Consensus       258 ~~l~~ll~~~-~~~v~~s~Di~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~  329 (333)
                      +.++++|+.. +..+....|+...||.+.+-|.+                  .++....++|+..+ +++|.+.
T Consensus       194 ~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~------------------~a~~ia~~nE~~~l~~~~Gid~  249 (467)
T 2q3e_A          194 QALCAVYEHWVPREKILTTNTWSSELSKLAANAF------------------LAQRISSINSISALCEATGADV  249 (467)
T ss_dssp             HHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHhCcCH
Confidence            9999999987 55556667888889999988873                  34455666777776 6666654

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.61  E-value=7.1e-15  Score=139.14  Aligned_cols=174  Identities=16%  Similarity=0.147  Sum_probs=120.2

Q ss_pred             CCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        40 ~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      ...+|||+|||+|.||+++|..|++. |     ++|++|+|++++++++..                             
T Consensus        18 ~~~m~~I~iIG~G~mG~~~A~~l~~~-G-----~~V~~~dr~~~~~~~l~~-----------------------------   62 (310)
T 3doj_A           18 GSHMMEVGFLGLGIMGKAMSMNLLKN-G-----FKVTVWNRTLSKCDELVE-----------------------------   62 (310)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSGGGGHHHHH-----------------------------
T ss_pred             cccCCEEEEECccHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHH-----------------------------
Confidence            34678999999999999999999999 8     999999999876643210                             


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-hhHHHHH---HHHHhhhhccCCCCEEEE
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVIIS  195 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps-~~~~~vl---~~i~~~l~~~~~~~~Ivs  195 (333)
                                                ..+..+++++++++++|+||++||. ..+++++   +++.+.+.+   +++||.
T Consensus        63 --------------------------~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~---g~~vv~  113 (310)
T 3doj_A           63 --------------------------HGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLEQICE---GKGYID  113 (310)
T ss_dssp             --------------------------TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCT---TCEEEE
T ss_pred             --------------------------CCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCchhhhhccCC---CCEEEE
Confidence                                      0245667888889999999999997 4788888   788877776   677877


Q ss_pred             eeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH--HhccCceeEEEeCChhhHHHHHHHhCCCCeEEEe
Q 019978          196 LAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD  273 (333)
Q Consensus       196 ~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e--v~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~  273 (333)
                      ++ ++.+.+     .+.+.+.+.+ .|.     .++..|.....  ...+. ..++++++++..+.++.+|+..+.++..
T Consensus       114 ~s-t~~~~~-----~~~~~~~~~~-~g~-----~~v~~pv~g~~~~a~~g~-l~i~~gg~~~~~~~~~~ll~~~g~~~~~  180 (310)
T 3doj_A          114 MS-TVDAET-----SLKINEAITG-KGG-----RFVEGPVSGSKKPAEDGQ-LIILAAGDKALFEESIPAFDVLGKRSFY  180 (310)
T ss_dssp             CS-CCCHHH-----HHHHHHHHHH-TTC-----EEEECCEECCHHHHHHTC-EEEEEEECHHHHHHHHHHHHHHEEEEEE
T ss_pred             CC-CCCHHH-----HHHHHHHHHH-cCC-----EEEeCCCCCChhHHhcCC-eEEEEcCCHHHHHHHHHHHHHhCCCEEE
Confidence            65 333321     1222232322 121     12223332211  12232 2234566778889999999988888888


Q ss_pred             cCChhHHHHHHHHHHHH
Q 019978          274 NGDLVTHEVMGGLKNVY  290 (333)
Q Consensus       274 s~Di~gve~~~alkNv~  290 (333)
                      ..+.-..++.+...|.+
T Consensus       181 ~g~~g~a~~~Kl~~N~~  197 (310)
T 3doj_A          181 LGQVGNGAKMKLIVNMI  197 (310)
T ss_dssp             CSSTTHHHHHHHHHHHH
T ss_pred             eCCcCHHHHHHHHHHHH
Confidence            88876678888888874

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.61  E-value=1.4e-14  Score=143.64  Aligned_cols=188  Identities=16%  Similarity=0.158  Sum_probs=126.4

Q ss_pred             CCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhh
Q 019978           39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE  118 (333)
Q Consensus        39 ~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~  118 (333)
                      .+..+|||+|||+|+||+.+|..|++  |     ++|++|+++++++++++.         +        +.+.+.+++.
T Consensus        32 r~~~~mkIaVIGlG~mG~~lA~~La~--G-----~~V~~~D~~~~~v~~l~~---------g--------~~~i~e~~l~   87 (432)
T 3pid_A           32 RGSEFMKITISGTGYVGLSNGVLIAQ--N-----HEVVALDIVQAKVDMLNQ---------K--------ISPIVDKEIQ   87 (432)
T ss_dssp             ---CCCEEEEECCSHHHHHHHHHHHT--T-----SEEEEECSCHHHHHHHHT---------T--------CCSSCCHHHH
T ss_pred             cccCCCEEEEECcCHHHHHHHHHHHc--C-----CeEEEEecCHHHhhHHhc---------c--------CCccccccHH
Confidence            34567999999999999999999985  6     999999999988765432         1        1234444332


Q ss_pred             hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-----------hHHHHHHHHHhhhhcc
Q 019978          119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----------ETKEVFEEISRYWKER  187 (333)
Q Consensus       119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-----------~~~~vl~~i~~~l~~~  187 (333)
                                 |++.++         ..++++++|+++++++||+||+|||+.           +++++++.+.+ +++ 
T Consensus        88 -----------~ll~~~---------~~~l~~ttd~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~-  145 (432)
T 3pid_A           88 -----------EYLAEK---------PLNFRATTDKHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INP-  145 (432)
T ss_dssp             -----------HHHHHS---------CCCEEEESCHHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCT-
T ss_pred             -----------HHHhhc---------cCCeEEEcCHHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCC-
Confidence                       111110         025889999999999999999999986           68999999999 876 


Q ss_pred             CCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhc----cCceeEEEeCChhhHHHHHHH
Q 019978          188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKF  263 (333)
Q Consensus       188 ~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~----~~~~~~~~~~~~~~~~~l~~l  263 (333)
                        +++||. .+++++++         .+.+.+.+..  .  .+.+.|.+..+...    ..|..++++++++.++++..+
T Consensus       146 --g~iVV~-~STv~pgt---------t~~l~~~l~~--~--~v~~sPe~~~~G~A~~~~l~p~rIvvG~~~~~~~~~~~l  209 (432)
T 3pid_A          146 --NAVMII-KSTIPVGF---------TRDIKERLGI--D--NVIFSPEFLREGRALYDNLHPSRIVIGERSARAERFADL  209 (432)
T ss_dssp             --TSEEEE-CSCCCTTH---------HHHHHHHHTC--C--CEEECCCCCCTTSHHHHHHSCSCEEESSCSHHHHHHHHH
T ss_pred             --CcEEEE-eCCCChHH---------HHHHHHHHhh--c--cEeecCccCCcchhhhcccCCceEEecCCHHHHHHHHHH
Confidence              676664 44666653         2334444542  1  24557777654322    123345666666777888888


Q ss_pred             hCCC----CeEEEecCChhHHHHHHHHHHH
Q 019978          264 LRRP----HFTVWDNGDLVTHEVMGGLKNV  289 (333)
Q Consensus       264 l~~~----~~~v~~s~Di~gve~~~alkNv  289 (333)
                      |...    +.++.. .|+...|+.|.+-|.
T Consensus       210 l~~~~~~~~~~v~~-~~~~~AE~~Kl~~N~  238 (432)
T 3pid_A          210 LKEGAIKQDIPTLF-TDSTEAEAIKLFANT  238 (432)
T ss_dssp             HHHHCSSSSCCEEE-CCHHHHHHHHHHHHH
T ss_pred             HHhhhccCCCeEEe-cCccHHHHHHHHHHH
Confidence            8641    234443 578888999988886

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.60  E-value=3.8e-15  Score=149.67  Aligned_cols=156  Identities=15%  Similarity=0.136  Sum_probs=107.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      .++|+|||+|+||++||..|+++ |     ++|++|+|++++++++..+                      .++      
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~-G-----~~V~v~~r~~~~~~~l~~~----------------------~~~------   60 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESR-G-----YTVSIFNRSREKTEEVIAE----------------------NPG------   60 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSSHHHHHHHHHH----------------------STT------
T ss_pred             CCeEEEEccHHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHhh----------------------CCC------
Confidence            37899999999999999999999 8     9999999998766543210                      000      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCc-hhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~---aDlIIlaVps-~~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                             ..+..++++++++.+   +|+||++||+ +.++++++++.+++++   +++||++++
T Consensus        61 -----------------------~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~~l~~~l~~---g~iIId~s~  114 (480)
T 2zyd_A           61 -----------------------KKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDK---GDIIIDGGN  114 (480)
T ss_dssp             -----------------------SCEEECSSHHHHHHTBCSSCEEEECSCSSSHHHHHHHHHGGGCCT---TCEEEECSC
T ss_pred             -----------------------CCeEEeCCHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHHhhcCC---CCEEEECCC
Confidence                                   035667888888776   9999999999 5899999999998876   789999999


Q ss_pred             cCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeE
Q 019978          199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFT  270 (333)
Q Consensus       199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~  270 (333)
                      |....+      ....+.+.+ .+.......+..||..+   ..+ + .++++++++..+.++.+|+..+.+
T Consensus       115 g~~~~t------~~l~~~l~~-~g~~~v~~pv~gg~~~a---~~g-~-~i~~gg~~~~~~~v~~ll~~~g~~  174 (480)
T 2zyd_A          115 TFFQDT------IRRNRELSA-EGFNFIGTGVSGGEEGA---LKG-P-SIMPGGQKEAYELVAPILTKIAAV  174 (480)
T ss_dssp             CCHHHH------HHHHHHHHH-TTCEEEEEEEESHHHHH---HHC-C-EEEEESCHHHHHHHHHHHHHHSCB
T ss_pred             CCHHHH------HHHHHHHHH-CCCCeeCCccccCHhHH---hcC-C-eEEecCCHHHHHHHHHHHHHHhcc
Confidence            987542      112333332 12110011222333332   233 3 345567777888999999865554

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.60  E-value=8.8e-15  Score=139.22  Aligned_cols=173  Identities=16%  Similarity=0.144  Sum_probs=117.8

Q ss_pred             CCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        40 ~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      ...+|||+|||+|.||+.+|..|++. |     ++|++|+|++++++++..                             
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~-G-----~~V~~~dr~~~~~~~l~~-----------------------------   72 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEA-G-----YALQVWNRTPARAASLAA-----------------------------   72 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHT-----------------------------
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhC-C-----CeEEEEcCCHHHHHHHHH-----------------------------
Confidence            34568999999999999999999999 8     999999999876543110                             


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-hhHHHHHH--HHHhhhhccCCCCEEEEe
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE--EISRYWKERITVPVIISL  196 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps-~~~~~vl~--~i~~~l~~~~~~~~Ivs~  196 (333)
                                                ..+..+++++++++++|+||++||. ..+++++.  .+.+.+.+   +++||.+
T Consensus        73 --------------------------~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~---~~~vi~~  123 (320)
T 4dll_A           73 --------------------------LGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQGVAAAMKP---GSLFLDM  123 (320)
T ss_dssp             --------------------------TTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTTCHHHHCCT---TCEEEEC
T ss_pred             --------------------------CCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcchhHHhhCCC---CCEEEec
Confidence                                      0345678899999999999999996 57888887  77777776   6788877


Q ss_pred             eecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHh-ccCceeEEEeCChhhHHHHHHHhCCCCeEEEecC
Q 019978          197 AKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY-NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG  275 (333)
Q Consensus       197 ~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~-~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~  275 (333)
                      +.+-...      .+.+.+.+.+ .+     ..++..|.+..... ......++++++++..+.++.+|+.. .++.+..
T Consensus       124 st~~~~~------~~~~~~~~~~-~g-----~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~-~~~~~~g  190 (320)
T 4dll_A          124 ASITPRE------ARDHAARLGA-LG-----IAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVF-GRATHVG  190 (320)
T ss_dssp             SCCCHHH------HHHHHHHHHH-TT-----CEEEECCEECHHHHHHHTCEEEEEESCHHHHHHHHHHHHHH-EEEEEEE
T ss_pred             CCCCHHH------HHHHHHHHHH-cC-----CEEEeCCCcCCHhHHhcCCeeEEeCCCHHHHHHHHHHHHhc-CCEEEeC
Confidence            6443221      1112222222 12     23444565543322 12222234567777888899998877 7777777


Q ss_pred             ChhHHHHHHHHHHH
Q 019978          276 DLVTHEVMGGLKNV  289 (333)
Q Consensus       276 Di~gve~~~alkNv  289 (333)
                      +.-..++.+..-|.
T Consensus       191 ~~g~a~~~Kl~~N~  204 (320)
T 4dll_A          191 PHGSGQLTKLANQM  204 (320)
T ss_dssp             STTHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHH
Confidence            76666777777776

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.59  E-value=9.9e-15  Score=136.40  Aligned_cols=171  Identities=16%  Similarity=0.189  Sum_probs=117.0

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .+|||+|||+|.||++++..|++. |     ++|++|+|++++++++..                               
T Consensus         3 ~~~~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~~~~~~~~~~~~-------------------------------   45 (301)
T 3cky_A            3 KSIKIGFIGLGAMGKPMAINLLKE-G-----VTVYAFDLMEANVAAVVA-------------------------------   45 (301)
T ss_dssp             -CCEEEEECCCTTHHHHHHHHHHT-T-----CEEEEECSSHHHHHHHHT-------------------------------
T ss_pred             CCCEEEEECccHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHH-------------------------------
Confidence            358999999999999999999998 8     899999999865432110                               


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-chhHHHHHH---HHHhhhhccCCCCEEEEee
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFE---EISRYWKERITVPVIISLA  197 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVp-s~~~~~vl~---~i~~~l~~~~~~~~Ivs~~  197 (333)
                                              ..+...+++++++.++|+||+++| +..++.++.   ++.+.+++   +++||+++
T Consensus        46 ------------------------~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~---~~~vv~~~   98 (301)
T 3cky_A           46 ------------------------QGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKA---GTVIVDMS   98 (301)
T ss_dssp             ------------------------TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHSCT---TCEEEECC
T ss_pred             ------------------------CCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchHhhcCCC---CCEEEECC
Confidence                                    023445678888889999999997 456888885   78888876   78999998


Q ss_pred             ecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHH--hccCceeEEEeCChhhHHHHHHHhCCCCeEEEecC
Q 019978          198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI--YNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG  275 (333)
Q Consensus       198 kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev--~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~  275 (333)
                      +|.....          +.+.+.++..  .+.++..|......  ..+..+ .+.+++++..+.++++|+..+++++...
T Consensus        99 ~~~~~~~----------~~l~~~~~~~--g~~~~~~p~~~~~~~a~~g~~~-~~~~g~~~~~~~v~~ll~~~g~~~~~~~  165 (301)
T 3cky_A           99 SVSPSST----------LKMAKVAAEK--GIDYVDAPVSGGTKGAEAGTLT-IMVGASEAVFEKIQPVLSVIGKDIYHVG  165 (301)
T ss_dssp             CCCHHHH----------HHHHHHHHHT--TCEEEECCEESHHHHHHHTCEE-EEEESCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             CCCHHHH----------HHHHHHHHHc--CCeEEEccCCCCHHHHHcCCeE-EEECCCHHHHHHHHHHHHHhcCCEEEeC
Confidence            8874221          2233333211  11223345443321  123222 2345567788999999999899888776


Q ss_pred             ChhHHHHHHHHHHH
Q 019978          276 DLVTHEVMGGLKNV  289 (333)
Q Consensus       276 Di~gve~~~alkNv  289 (333)
                      +.-...|.+...|.
T Consensus       166 ~~g~~~~~Kl~~N~  179 (301)
T 3cky_A          166 DTGAGDAVKIVNNL  179 (301)
T ss_dssp             STTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            66666777777775

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.59  E-value=5.6e-15  Score=148.40  Aligned_cols=157  Identities=15%  Similarity=0.129  Sum_probs=109.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|+||+++|..|+++ |     ++|.+|+|++++++++..         +            ..++       
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~-G-----~~V~v~dr~~~~~~~l~~---------~------------~~~g-------   48 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDH-G-----FVVCAFNRTVSKVDDFLA---------N------------EAKG-------   48 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSTHHHHHHHH---------T------------TTTT-------
T ss_pred             CeEEEEChHHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHh---------c------------cccC-------
Confidence            7999999999999999999999 8     999999999887654221         0            0000       


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHh---cCCCEEEEecCch-hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV---WDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~---~~aDlIIlaVps~-~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                            ..+..++++++++   +++|+||++||+. .++++++++.+++++   +++||++++|
T Consensus        49 ----------------------~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~vl~~l~~~l~~---g~iII~~s~~  103 (482)
T 2pgd_A           49 ----------------------TKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDI---GDIIIDGGNS  103 (482)
T ss_dssp             ----------------------SSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHHHHHHHHHHCCT---TCEEEECSCC
T ss_pred             ----------------------CCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHHHHHHHHhhcCC---CCEEEECCCC
Confidence                                  0355667888876   4899999999995 899999999998876   6889999988


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEE
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTV  271 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v  271 (333)
                      ....+      ....+.+.+ .+     +.++.+|....+...+..+.++.+++++..+.++.+|+..+.++
T Consensus       104 ~~~~~------~~l~~~l~~-~g-----~~~v~~pv~g~~~~a~~g~~i~~gg~~e~~~~v~~ll~~~g~~v  163 (482)
T 2pgd_A          104 EYRDT------MRRCRDLKD-KG-----ILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKV  163 (482)
T ss_dssp             CHHHH------HHHHHHHHH-TT-----CEEEEEEEESHHHHHHHCCEEEEEECTTTHHHHHHHHHHHSCBC
T ss_pred             CHHHH------HHHHHHHHH-cC-----CeEeCCCCCCChhhhccCCeEEeCCCHHHHHHHHHHHHHhhhhc
Confidence            77542      112222322 12     22445565543332222223355566778899999998877765

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.59  E-value=8.3e-15  Score=138.04  Aligned_cols=173  Identities=13%  Similarity=0.057  Sum_probs=115.6

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .+|||+|||+|.||+++|..|++. |     ++|++|+|++++++++...                        +     
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~-G-----~~V~~~dr~~~~~~~~~~~------------------------g-----   50 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRA-G-----LSTWGADLNPQACANLLAE------------------------G-----   50 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHT------------------------T-----
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHHHHHc------------------------C-----
Confidence            347999999999999999999999 8     9999999998765432110                        0     


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH---HHHHhhhhccCCCCEEEEee
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF---EEISRYWKERITVPVIISLA  197 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl---~~i~~~l~~~~~~~~Ivs~~  197 (333)
                                               ...++++++++++++|+||++||+. .++.++   +++.+.+++   +++||.++
T Consensus        51 -------------------------~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~---g~ivv~~s  102 (303)
T 3g0o_A           51 -------------------------ACGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKP---GSAVMVSS  102 (303)
T ss_dssp             -------------------------CSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--CCCGGGSCT---TCEEEECS
T ss_pred             -------------------------CccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChhhHHhhCCC---CCEEEecC
Confidence                                     0112566778889999999999985 788887   778888776   67887766


Q ss_pred             ecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH--HhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecC
Q 019978          198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG  275 (333)
Q Consensus       198 kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e--v~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~  275 (333)
                      +. .+.+         .+.+.+.+..  ....++..|.....  ...+ ...++++++++..+.++.+|+..+.++....
T Consensus       103 t~-~~~~---------~~~~~~~~~~--~g~~~~~~pv~g~~~~a~~g-~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~~  169 (303)
T 3g0o_A          103 TI-SSAD---------AQEIAAALTA--LNLNMLDAPVSGGAVKAAQG-EMTVMASGSEAAFTRLKPVLDAVASNVYRIS  169 (303)
T ss_dssp             CC-CHHH---------HHHHHHHHHT--TTCEEEECCEESCHHHHHTT-CEEEEEECCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             CC-CHHH---------HHHHHHHHHH--cCCeEEeCCCCCChhhhhcC-CeEEEeCCCHHHHHHHHHHHHHHCCCEEECC
Confidence            43 2221         1223332211  11223334433221  1222 2223456777889999999998888877666


Q ss_pred             C-hhHHHHHHHHHHHH
Q 019978          276 D-LVTHEVMGGLKNVY  290 (333)
Q Consensus       276 D-i~gve~~~alkNv~  290 (333)
                      + +-..++.+...|.+
T Consensus       170 ~~~g~a~~~Kl~~N~~  185 (303)
T 3g0o_A          170 DTPGAGSTVKIIHQLL  185 (303)
T ss_dssp             SSTTHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHH
Confidence            5 66678888887774

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.58  E-value=2.9e-14  Score=132.18  Aligned_cols=167  Identities=19%  Similarity=0.230  Sum_probs=111.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      ||||+|||+|.||++++..|++  |     ++|++|+|++++++++...                        +      
T Consensus         1 M~~i~iiG~G~~G~~~a~~l~~--g-----~~V~~~~~~~~~~~~~~~~------------------------g------   43 (289)
T 2cvz_A            1 MEKVAFIGLGAMGYPMAGHLAR--R-----FPTLVWNRTFEKALRHQEE------------------------F------   43 (289)
T ss_dssp             -CCEEEECCSTTHHHHHHHHHT--T-----SCEEEECSSTHHHHHHHHH------------------------H------
T ss_pred             CCeEEEEcccHHHHHHHHHHhC--C-----CeEEEEeCCHHHHHHHHHC------------------------C------
Confidence            4799999999999999999986  5     8999999998765432110                        0      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~-~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                               +...+ +++++.++|+||+|+|+.. ++++++++.+.+++   +++|++++++..
T Consensus        44 -------------------------~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~~~l~~~l~~---~~~vv~~s~~~~   94 (289)
T 2cvz_A           44 -------------------------GSEAV-PLERVAEARVIFTCLPTTREVYEVAEALYPYLRE---GTYWVDATSGEP   94 (289)
T ss_dssp             -------------------------CCEEC-CGGGGGGCSEEEECCSSHHHHHHHHHHHTTTCCT---TEEEEECSCCCH
T ss_pred             -------------------------CcccC-HHHHHhCCCEEEEeCCChHHHHHHHHHHHhhCCC---CCEEEECCCCCH
Confidence                                     11122 4566789999999999874 89999999888776   678887765432


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchH--HHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCChhH
Q 019978          202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS--EIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT  279 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~--ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di~g  279 (333)
                      ..          .+.+.+.++..  ...++..|....  ....+..+ .+.+++++..+.++++| ..+++++..+|.-.
T Consensus        95 ~~----------~~~l~~~~~~~--g~~~~~~p~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~ll-~~g~~~~~~~~~~~  160 (289)
T 2cvz_A           95 EA----------SRRLAERLREK--GVTYLDAPVSGGTSGAEAGTLT-VMLGGPEEAVERVRPFL-AYAKKVVHVGPVGA  160 (289)
T ss_dssp             HH----------HHHHHHHHHTT--TEEEEECCEESHHHHHHHTCEE-EEEESCHHHHHHHGGGC-TTEEEEEEEESTTH
T ss_pred             HH----------HHHHHHHHHHc--CCEEEEecCCCChhHHhhCCeE-EEECCCHHHHHHHHHHH-hhcCCeEEcCCCcH
Confidence            21          12344444321  123344464322  22233322 23456677889999999 99998877777766


Q ss_pred             HHHHHHHHHH
Q 019978          280 HEVMGGLKNV  289 (333)
Q Consensus       280 ve~~~alkNv  289 (333)
                      ..|.+...|.
T Consensus       161 ~~~~k~~~n~  170 (289)
T 2cvz_A          161 GHAVKAINNA  170 (289)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6777766665

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.58  E-value=1.3e-14  Score=135.00  Aligned_cols=171  Identities=15%  Similarity=0.116  Sum_probs=116.5

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ++|||+|||+|.||+++|..|++. |     ++|++|+ ++++++++..+                              
T Consensus         2 ~~m~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~-~~~~~~~~~~~------------------------------   44 (295)
T 1yb4_A            2 NAMKLGFIGLGIMGSPMAINLARA-G-----HQLHVTT-IGPVADELLSL------------------------------   44 (295)
T ss_dssp             --CEEEECCCSTTHHHHHHHHHHT-T-----CEEEECC-SSCCCHHHHTT------------------------------
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhC-C-----CEEEEEc-CHHHHHHHHHc------------------------------
Confidence            568999999999999999999998 8     9999999 87765432100                              


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHHH---HHHhhhhccCCCCEEEEee
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVFE---EISRYWKERITVPVIISLA  197 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~-~~~vl~---~i~~~l~~~~~~~~Ivs~~  197 (333)
                                               .+...++++++++++|+||+++|... ++.++.   ++.+.+++   +++||+++
T Consensus        45 -------------------------g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~---~~~vv~~s   96 (295)
T 1yb4_A           45 -------------------------GAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGCAKTSLQ---GKTIVDMS   96 (295)
T ss_dssp             -------------------------TCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSSTTSCCT---TEEEEECS
T ss_pred             -------------------------CCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhHhhcCCC---CCEEEECC
Confidence                                     12234667788889999999998765 888887   77777766   67888888


Q ss_pred             ecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH--HhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecC
Q 019978          198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG  275 (333)
Q Consensus       198 kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e--v~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~  275 (333)
                      +|....          .+.+.+.++.  ..+.++..|.....  ...+... ++++++++..+.++++|+..+++++..+
T Consensus        97 ~~~~~~----------~~~l~~~~~~--~g~~~~~~p~~~~~~~a~~g~~~-~~~~~~~~~~~~~~~ll~~~g~~~~~~~  163 (295)
T 1yb4_A           97 SISPIE----------TKRFAQRVNE--MGADYLDAPVSGGEIGAREGTLS-IMVGGEQKVFDRVKPLFDILGKNITLVG  163 (295)
T ss_dssp             CCCHHH----------HHHHHHHHHT--TTEEEEECCEESHHHHHHHTCEE-EEEESCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             CCCHHH----------HHHHHHHHHH--cCCeEEEccCCCCHHHHHcCCeE-EEECCCHHHHHHHHHHHHHhcCCEEEeC
Confidence            774321          1223443431  11223334443321  1123322 3445667788999999999899888777


Q ss_pred             ChhHHHHHHHHHHHH
Q 019978          276 DLVTHEVMGGLKNVY  290 (333)
Q Consensus       276 Di~gve~~~alkNv~  290 (333)
                      |.-...|.+...|.+
T Consensus       164 ~~~~~~~~Kl~~n~~  178 (295)
T 1yb4_A          164 GNGDGQTCKVANQII  178 (295)
T ss_dssp             STTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            777777888877763

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=99.58  E-value=2.2e-14  Score=131.56  Aligned_cols=152  Identities=18%  Similarity=0.241  Sum_probs=109.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|+||+++|..|++. |.    ++|++|+|++++++++..+                     +          
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~-g~----~~v~~~~r~~~~~~~~~~~---------------------~----------   44 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQ-GG----YRIYIANRGAEKRERLEKE---------------------L----------   44 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-CS----CEEEEECSSHHHHHHHHHH---------------------T----------
T ss_pred             CEEEEECchHHHHHHHHHHHHC-CC----CeEEEECCCHHHHHHHHHh---------------------c----------
Confidence            6999999999999999999988 61    6899999998765432100                     0          


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                                             .+.+++++++++ ++|+||+|||++.++++++++.+  +    +++|+++++|+.++
T Consensus        45 -----------------------g~~~~~~~~~~~-~~D~vi~~v~~~~~~~v~~~l~~--~----~~ivv~~~~g~~~~   94 (263)
T 1yqg_A           45 -----------------------GVETSATLPELH-SDDVLILAVKPQDMEAACKNIRT--N----GALVLSVAAGLSVG   94 (263)
T ss_dssp             -----------------------CCEEESSCCCCC-TTSEEEECSCHHHHHHHHTTCCC--T----TCEEEECCTTCCHH
T ss_pred             -----------------------CCEEeCCHHHHh-cCCEEEEEeCchhHHHHHHHhcc--C----CCEEEEecCCCCHH
Confidence                                   233445555667 99999999999999999987765  2    57899998888753


Q ss_pred             ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeC--ChhhHHHHHHHhCCCCeEEEec-CC
Q 019978          204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDN-GD  276 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~--~~~~~~~l~~ll~~~~~~v~~s-~D  276 (333)
                                  .+++.++.. ..+ +...|+++..+..+.+. ++.+.  +++..+.++++|+..+++++.. +|
T Consensus        95 ------------~l~~~~~~~-~~~-v~~~~~~~~~~~~g~~~-i~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  155 (263)
T 1yqg_A           95 ------------TLSRYLGGT-RRI-VRVMPNTPGKIGLGVSG-MYAEAEVSETDRRIADRIMKSVGLTVWLDDEE  155 (263)
T ss_dssp             ------------HHHHHTTSC-CCE-EEEECCGGGGGTCEEEE-EECCTTSCHHHHHHHHHHHHTTEEEEECSSTT
T ss_pred             ------------HHHHHcCCC-CcE-EEEcCCHHHHHcCceEE-EEcCCCCCHHHHHHHHHHHHhCCCEEEeCChh
Confidence                        366666532 223 23378888776655432 22333  5678899999999999988776 55

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=99.58  E-value=3.6e-14  Score=130.02  Aligned_cols=156  Identities=12%  Similarity=0.141  Sum_probs=116.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +|||+|||+|+||+++|..|+++ |.+.+ ++|++|+|++++ .                                    
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~-g~~~~-~~v~~~~~~~~~-~------------------------------------   44 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANA-NIIKK-ENLFYYGPSKKN-T------------------------------------   44 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHH-TSSCG-GGEEEECSSCCS-S------------------------------------
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC-CCCCC-CeEEEEeCCccc-C------------------------------------
Confidence            47999999999999999999998 72221 589999998752 0                                    


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                                              .+.++++++++++++|+||+|||++.++++++++.+++ +   ++.|++.++|+..
T Consensus        45 ------------------------g~~~~~~~~~~~~~~D~vi~~v~~~~~~~v~~~l~~~l-~---~~~vv~~~~gi~~   96 (262)
T 2rcy_A           45 ------------------------TLNYMSSNEELARHCDIIVCAVKPDIAGSVLNNIKPYL-S---SKLLISICGGLNI   96 (262)
T ss_dssp             ------------------------SSEECSCHHHHHHHCSEEEECSCTTTHHHHHHHSGGGC-T---TCEEEECCSSCCH
T ss_pred             ------------------------ceEEeCCHHHHHhcCCEEEEEeCHHHHHHHHHHHHHhc-C---CCEEEEECCCCCH
Confidence                                    12344667777889999999999999999999999887 4   5789999999886


Q ss_pred             cccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeC--ChhhHHHHHHHhCCCCeEEEecCChhHH
Q 019978          203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNGDLVTH  280 (333)
Q Consensus       203 ~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~--~~~~~~~l~~ll~~~~~~v~~s~Di~gv  280 (333)
                      +            .+++.++.. .+ .+..+|+++.....+ .+......  +++..+.++.+|+..+..++..+|..+.
T Consensus        97 ~------------~l~~~~~~~-~~-~v~~~p~~p~~~~~g-~~~~~~~~~~~~~~~~~~~~ll~~~G~~~~~~~~~~~~  161 (262)
T 2rcy_A           97 G------------KLEEMVGSE-NK-IVWVMPNTPCLVGEG-SFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDMDI  161 (262)
T ss_dssp             H------------HHHHHHCTT-SE-EEEEECCGGGGGTCE-EEEEEECTTCCHHHHHHHHHHHHTSEEEEECCGGGHHH
T ss_pred             H------------HHHHHhCCC-Cc-EEEECCChHHHHcCC-eEEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHHccH
Confidence            4            366667532 12 346779998877766 44333332  5677899999999998866666665543

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.58  E-value=1.2e-14  Score=146.72  Aligned_cols=156  Identities=13%  Similarity=0.091  Sum_probs=107.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      .+|+|||+|+||++||..|+++ |     ++|++|+|++++++++..        ..             .++       
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~-G-----~~V~v~dr~~~~~~~l~~--------~~-------------~~~-------   56 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADH-G-----FTVCAYNRTQSKVDHFLA--------NE-------------AKG-------   56 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSHHHHHHHH--------TT-------------TTT-------
T ss_pred             CCEEEEeeHHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHc--------cc-------------ccC-------
Confidence            5899999999999999999999 8     999999999987654321        00             000       


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCc-hhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~---aDlIIlaVps-~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                            ..+..++++++++++   +|+||++||+ +.++++++++.+++++   +++||+++++
T Consensus        57 ----------------------~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~~l~~~l~~---g~iIId~s~~  111 (497)
T 2p4q_A           57 ----------------------KSIIGATSIEDFISKLKRPRKVMLLVKAGAPVDALINQIVPLLEK---GDIIIDGGNS  111 (497)
T ss_dssp             ----------------------SSEECCSSHHHHHHTSCSSCEEEECCCSSHHHHHHHHHHGGGCCT---TCEEEECSCC
T ss_pred             ----------------------CCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHHHHHHHHHHhCCC---CCEEEECCCC
Confidence                                  035566788887776   9999999999 5899999999999887   7899999988


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeE
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFT  270 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~  270 (333)
                      ....+      ..+.+.+.+ .|.......+..||..+   ..+ + .++++++++..+.++.+|+..+.+
T Consensus       112 ~~~~~------~~l~~~l~~-~g~~~v~~pVsgg~~~a---~~G-~-~im~gg~~e~~~~v~~ll~~~g~~  170 (497)
T 2p4q_A          112 HFPDS------NRRYEELKK-KGILFVGSGVSGGEEGA---RYG-P-SLMPGGSEEAWPHIKNIFQSISAK  170 (497)
T ss_dssp             CHHHH------HHHHHHHHH-TTCEEEEEEEESHHHHH---HHC-C-EEEEEECGGGHHHHHHHHHHHSCE
T ss_pred             ChhHH------HHHHHHHHH-cCCceeCCCcccChhHh---hcC-C-eEEecCCHHHHHHHHHHHHHhcCc
Confidence            76532      112222322 12111112233334332   233 2 345566778889999999876665

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.57  E-value=1.7e-14  Score=144.78  Aligned_cols=158  Identities=10%  Similarity=0.107  Sum_probs=105.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|+||+++|..|+++ |     ++|++|+|++++++++..++        .          .. +.       
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~-G-----~~V~v~dr~~~~~~~l~~~~--------g----------~~-~~-------   49 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEK-G-----FKVAVFNRTYSKSEEFMKAN--------A----------SA-PF-------   49 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHHHHHT--------T----------TS-TT-------
T ss_pred             CEEEEEChHHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHHhc--------C----------CC-CC-------
Confidence            7999999999999999999999 8     99999999987765432110        0          00 00       


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhc---CCCEEEEecCch-hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW---DADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~---~aDlIIlaVps~-~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                         +                  ..+..++++++++.   ++|+||++||+. .++++++++.+++++   +++||++++|
T Consensus        50 ---~------------------~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~vl~~l~~~l~~---g~iIId~sng  105 (478)
T 1pgj_A           50 ---A------------------GNLKAFETMEAFAASLKKPRKALILVQAGAATDSTIEQLKKVFEK---GDILVDTGNA  105 (478)
T ss_dssp             ---G------------------GGEEECSCHHHHHHHBCSSCEEEECCCCSHHHHHHHHHHHHHCCT---TCEEEECCCC
T ss_pred             ---C------------------CCeEEECCHHHHHhcccCCCEEEEecCChHHHHHHHHHHHhhCCC---CCEEEECCCC
Confidence               0                  13566788888776   499999999994 899999999998877   6889999988


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchH-HHhccCceeEEEeCChhhHHHHHHHhCCCCeE
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS-EIYNKEYANARICGAEKWRKPLAKFLRRPHFT  270 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~-ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~  270 (333)
                      ....+          +.+.+.++...  +.++..|.... +.....++ ++.+++++..+.++.+|+..+.+
T Consensus       106 ~~~~~----------~~l~~~l~~~g--~~~v~~pv~gg~~~a~~g~~-i~~gg~~~~~~~v~~ll~~~g~~  164 (478)
T 1pgj_A          106 HFKDQ----------GRRAQQLEAAG--LRFLGMGISGGEEGARKGPA-FFPGGTLSVWEEIRPIVEAAAAK  164 (478)
T ss_dssp             CHHHH----------HHHHHHHHTTT--CEEEEEEEESHHHHHHHCCE-EEEEECHHHHHHHHHHHHHHSCB
T ss_pred             ChHHH----------HHHHHHHHHCC--CeEEEeeccCCHHHHhcCCe-EeccCCHHHHHHHHHHHHHhccc
Confidence            76531          22333332111  11222232221 12222233 34555677788888888865554

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.56  E-value=7.9e-14  Score=129.96  Aligned_cols=168  Identities=15%  Similarity=0.163  Sum_probs=109.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|+||+++|..|++. |     ++|++|+|++++++++..                                 
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~-g-----~~V~~~~~~~~~~~~~~~---------------------------------   41 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKH-G-----YPLIIYDVFPDACKEFQD---------------------------------   41 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHT-T-----CCEEEECSSTHHHHHHHT---------------------------------
T ss_pred             CeEEEEeccHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHH---------------------------------
Confidence            6899999999999999999998 8     899999999875542110                                 


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-chhHHHHHHHHH---hhhhccCCCCEEEEeeec
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFEEIS---RYWKERITVPVIISLAKG  199 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVp-s~~~~~vl~~i~---~~l~~~~~~~~Ivs~~kG  199 (333)
                                            ..+.+++++++++.++|+||+++| ++.++.++.++.   +.+++   ++++|+ ++|
T Consensus        42 ----------------------~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~~~~l~~---~~~vv~-~s~   95 (296)
T 2gf2_A           42 ----------------------AGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKK---GSLLID-SST   95 (296)
T ss_dssp             ----------------------TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSGGGTCCT---TCEEEE-CSC
T ss_pred             ----------------------cCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhHHhcCCC---CCEEEE-CCC
Confidence                                  024455778888889999999995 568899888754   34555   678888 788


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHh--ccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCCh
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY--NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL  277 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~--~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di  277 (333)
                      +.+.+     ...+.+.+.+ .+     ..+...|.......  .+. ..++.+++++..+.++++|+..+++++...+.
T Consensus        96 ~~~~~-----~~~~~~~~~~-~g-----~~~~~~p~~~g~~~a~~~~-~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~  163 (296)
T 2gf2_A           96 IDPAV-----SKELAKEVEK-MG-----AVFMDAPVSGGVGAARSGN-LTFMVGGVEDEFAAAQELLGCMGSNVVYCGAV  163 (296)
T ss_dssp             CCHHH-----HHHHHHHHHH-TT-----CEEEECCEESHHHHHHHTC-EEEEEESCGGGHHHHHHHHTTTEEEEEEEEST
T ss_pred             CCHHH-----HHHHHHHHHH-cC-----CEEEEcCCCCChhHHhcCc-EEEEeCCCHHHHHHHHHHHHHHcCCeEEeCCc
Confidence            87652     1112222222 12     11222333322111  222 22344667788999999999999988765542


Q ss_pred             hHHHHHHHHHH
Q 019978          278 VTHEVMGGLKN  288 (333)
Q Consensus       278 ~gve~~~alkN  288 (333)
                      -...+.+...|
T Consensus       164 g~~~~~kl~~n  174 (296)
T 2gf2_A          164 GTGQAAKICNN  174 (296)
T ss_dssp             THHHHHHHHHH
T ss_pred             cHHHHHHHHHH
Confidence            22234444444

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.55  E-value=4.7e-14  Score=141.38  Aligned_cols=155  Identities=12%  Similarity=0.066  Sum_probs=107.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +|||+|||+|+||+++|..|+++ |     ++|.+|+|++++++++..+                      .++      
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~-G-----~~V~v~dr~~~~~~~l~~~----------------------~~~------   50 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESR-G-----YTVAIYNRTTSKTEEVFKE----------------------HQD------   50 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHHHHH----------------------TTT------
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhC-C-----CEEEEEcCCHHHHHHHHHh----------------------CcC------
Confidence            37999999999999999999999 8     8999999998766542210                      000      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCc-hhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~---aDlIIlaVps-~~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                             ..+..++++++++.+   +|+||++||+ +.++++++++.+++++   +++||++++
T Consensus        51 -----------------------~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~vl~~l~~~l~~---g~iiId~s~  104 (474)
T 2iz1_A           51 -----------------------KNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDI---GDILIDGGN  104 (474)
T ss_dssp             -----------------------SCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHHHHHHGGGCCT---TCEEEECSC
T ss_pred             -----------------------CCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHHHHHHHhhCCC---CCEEEECCC
Confidence                                   035567788887765   9999999999 5899999999998876   688999988


Q ss_pred             cCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHH-hccCceeEEEeCChhhHHHHHHHhCCCCeE
Q 019978          199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI-YNKEYANARICGAEKWRKPLAKFLRRPHFT  270 (333)
Q Consensus       199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev-~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~  270 (333)
                      |....+          +.+.+.+...  .+.++..|....+. ....++ ++.+++++..+.++.+|+..+.+
T Consensus       105 ~~~~~~----------~~l~~~l~~~--g~~~v~~pv~gg~~~a~~g~~-i~~gg~~~~~~~v~~ll~~~g~~  164 (474)
T 2iz1_A          105 THFPDT----------MRRNAELADS--GINFIGTGVSGGEKGALLGPS-MMPGGQKEAYDLVAPIFEQIAAK  164 (474)
T ss_dssp             CCHHHH----------HHHHHHTTTS--SCEEEEEEECSHHHHHHHCCC-EEEEECHHHHHHHHHHHHHHSCB
T ss_pred             CCHHHH----------HHHHHHHHHC--CCeEECCCCCCChhhhccCCe-EEecCCHHHHHHHHHHHHHHhcc
Confidence            876431          2234444321  12233445443221 222233 34556777888889888865554

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.54  E-value=2.1e-13  Score=129.39  Aligned_cols=173  Identities=9%  Similarity=0.069  Sum_probs=117.1

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCC--cchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG--RSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE  118 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~--~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~  118 (333)
                      .+|||+|||+|.||+++|..|++. |     + +|++|+|++  +..+.+                          ..  
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~-G-----~~~V~~~dr~~~~~~~~~~--------------------------~~--   68 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQA-G-----AIDMAAYDAASAESWRPRA--------------------------EE--   68 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHH-S-----CCEEEEECSSCHHHHHHHH--------------------------HH--
T ss_pred             CCCEEEEECccHHHHHHHHHHHHC-C-----CCeEEEEcCCCCHHHHHHH--------------------------HH--
Confidence            568999999999999999999999 8     8 999999974  332211                          00  


Q ss_pred             hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                                 ..+..+++++++++++|+||++||++...++++++.+.+++   +++||.++ 
T Consensus        69 ---------------------------~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~~~~l~~~l~~---~~ivvd~s-  117 (312)
T 3qsg_A           69 ---------------------------LGVSCKASVAEVAGECDVIFSLVTAQAALEVAQQAGPHLCE---GALYADFT-  117 (312)
T ss_dssp             ---------------------------TTCEECSCHHHHHHHCSEEEECSCTTTHHHHHHHHGGGCCT---TCEEEECC-
T ss_pred             ---------------------------CCCEEeCCHHHHHhcCCEEEEecCchhHHHHHHhhHhhcCC---CCEEEEcC-
Confidence                                       03456678888899999999999999988899999988876   67787765 


Q ss_pred             cCcccccCCccCCCHHHHHHhHh-CCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCC-
Q 019978          199 GVEAELEAVPRIITPTQMINRAT-GVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD-  276 (333)
Q Consensus       199 Gi~~~~~~~~~~~~~se~i~~~l-g~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~D-  276 (333)
                      ++.+.+     ...+.+.+.+.. |..... +-++||..+.   .+..+ .++++++.  +.++.+|+..+.++....+ 
T Consensus       118 t~~~~~-----~~~~~~~~~~~~~g~~~vd-~pv~g~~~~~---~g~l~-i~vgg~~~--~~~~~ll~~~g~~~~~~g~~  185 (312)
T 3qsg_A          118 SCSPAV-----KRAIGDVISRHRPSAQYAA-VAVMSAVKPH---GHRVP-LVVDGDGA--RRFQAAFTLYGCRIEVLDGE  185 (312)
T ss_dssp             CCCHHH-----HHHHHHHHHHHCTTCEEEE-EEECSCSTTT---GGGSE-EEEESTTH--HHHHHHHHTTTCEEEECCSS
T ss_pred             CCCHHH-----HHHHHHHHHhhcCCCeEEe-ccccCCchhh---cCCEE-EEecCChH--HHHHHHHHHhCCCeEEcCCC
Confidence            333331     122233333321 321111 2345654432   23232 34455444  8899999998888877776 


Q ss_pred             hhHHHHHHHHHHHHH
Q 019978          277 LVTHEVMGGLKNVYA  291 (333)
Q Consensus       277 i~gve~~~alkNv~A  291 (333)
                      +-..++.+...|.+.
T Consensus       186 ~g~a~~~Kl~~n~~~  200 (312)
T 3qsg_A          186 VGGAALLKMCRSAVL  200 (312)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            667788888888643

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=99.53  E-value=2.9e-13  Score=134.59  Aligned_cols=215  Identities=15%  Similarity=0.082  Sum_probs=136.9

Q ss_pred             CccccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhh
Q 019978           13 SSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEH   92 (333)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~   92 (333)
                      ||.++-|||+|-+-            ..++|.+|+|||+|.+|..+|..|++. |     |+|+.+|.++++++.++   
T Consensus         3 ~~~~~~~~~~~~~p------------~~~~m~~IaViGlGYVGLp~A~~~A~~-G-----~~V~g~Did~~kV~~ln---   61 (444)
T 3vtf_A            3 SSHHHHHHSSGLVP------------RGSHMASLSVLGLGYVGVVHAVGFALL-G-----HRVVGYDVNPSIVERLR---   61 (444)
T ss_dssp             ----------CCCC------------TTCCCCEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSCHHHHHHHH---
T ss_pred             cccccccccCCcCC------------CCCCCCEEEEEccCHHHHHHHHHHHhC-C-----CcEEEEECCHHHHHHHH---
Confidence            34456677777543            234567999999999999999999999 8     99999999998887654   


Q ss_pred             HHHHHhhhhhHHHHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc--
Q 019978           93 LFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS--  170 (333)
Q Consensus        93 l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps--  170 (333)
                            ++.        .|.+.+++.           |++.+.+..       .++++++|.++++.++|++|+|||.  
T Consensus        62 ------~G~--------~pi~Epgl~-----------ell~~~~~~-------g~l~~tt~~~~ai~~ad~~~I~VpTP~  109 (444)
T 3vtf_A           62 ------AGR--------PHIYEPGLE-----------EALGRALSS-------GRLSFAESAEEAVAATDATFIAVGTPP  109 (444)
T ss_dssp             ------TTC--------CSSCCTTHH-----------HHHHHHHHT-------TCEEECSSHHHHHHTSSEEEECCCCCB
T ss_pred             ------CCC--------CCCCCCCHH-----------HHHHHHHHc-------CCeeEEcCHHHHHhcCCceEEEecCCC
Confidence                  221        233444332           333332211       2688999999999999999999975  


Q ss_pred             --------hhHHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCCH-HHHHHhHhCCCCCcEEEEcCCCchHHHh
Q 019978          171 --------TETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITP-TQMINRATGVPIENILYLGGPNIASEIY  241 (333)
Q Consensus       171 --------~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~-se~i~~~lg~~~~~~~vl~GP~~a~ev~  241 (333)
                              .++.++.+.|.+++++.-++++ |..-..+.+++     .+.+ ...+++..+  ...+.+.+.|.+..+..
T Consensus       110 ~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~l-VV~eSTVppGt-----te~~~~~~l~~~~~--~~~f~v~~~PErl~eG~  181 (444)
T 3vtf_A          110 APDGSADLRYVEAAARAVGRGIRAKGRWHL-VVVKSTVPPGT-----TEGLVARAVAEEAG--GVKFSVASNPEFLREGS  181 (444)
T ss_dssp             CTTSSBCCHHHHHHHHHHHHHHHHHCSCCE-EEECSCCCTTT-----TTTHHHHHHHTTTT--TCCCEEEECCCCCCTTS
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHhhcCCCeE-EEEeCCCCCch-----HHHHHHHHHHHhCC--CCCceeecCcccccCCc
Confidence                    3689999999998863211344 44444566653     3333 334444333  24467888999876543


Q ss_pred             c----cCceeEEE-eCChhhHHHHHHHhCCCCeEEEecCChhHHHHHHHHHHH
Q 019978          242 N----KEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNV  289 (333)
Q Consensus       242 ~----~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~Di~gve~~~alkNv  289 (333)
                      .    ..+..+++ +.++...+.+..++....-.+ +..|+..+|.++.+-|.
T Consensus       182 a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~~~~-~~~~~~~AE~~Kl~eN~  233 (444)
T 3vtf_A          182 ALEDFFKPDRIVIGAGDERAASFLLDVYKAVDAPK-LVMKPREAELVKYASNV  233 (444)
T ss_dssp             HHHHHHSCSCEEEEESSHHHHHHHHHHTTTSCSCE-EEECHHHHHHHHHHHHH
T ss_pred             cccccccCCcEEEcCCCHHHHHHHHHHHhccCCCE-EEechhHHHHHHHHHHH
Confidence            2    12333444 445567778888887654333 34688999999988886

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.52  E-value=2.2e-13  Score=129.65  Aligned_cols=176  Identities=12%  Similarity=0.013  Sum_probs=116.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +|||+|||+|.||+++|..|+++ |.    ++|++|+|+++..++...     ....              +..      
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~-G~----~~V~~~dr~~~~~~~~~~-----~~~~--------------~~~------   73 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGR-NA----ARLAAYDLRFNDPAASGA-----LRAR--------------AAE------   73 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-TC----SEEEEECGGGGCTTTHHH-----HHHH--------------HHH------
T ss_pred             CCeEEEECccHHHHHHHHHHHHc-CC----CeEEEEeCCCccccchHH-----HHHH--------------HHH------
Confidence            37999999999999999999998 51    699999999753322110     0000              000      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEec-CHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVT-NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~-d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                             ..+  .+ +++++++++|+||++||++...+.++++.+.+++   +++||+++ ++.
T Consensus        74 -----------------------~g~--~~~s~~e~~~~aDvVi~avp~~~~~~~~~~i~~~l~~---~~ivv~~s-t~~  124 (317)
T 4ezb_A           74 -----------------------LGV--EPLDDVAGIACADVVLSLVVGAATKAVAASAAPHLSD---EAVFIDLN-SVG  124 (317)
T ss_dssp             -----------------------TTC--EEESSGGGGGGCSEEEECCCGGGHHHHHHHHGGGCCT---TCEEEECC-SCC
T ss_pred             -----------------------CCC--CCCCHHHHHhcCCEEEEecCCHHHHHHHHHHHhhcCC---CCEEEECC-CCC
Confidence                                   023  34 6778889999999999999888888999988876   67888766 444


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCC-hhHH
Q 019978          202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD-LVTH  280 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~D-i~gv  280 (333)
                      +.+     .+.+.+.+.+ .|.. ..-+.++||..+.   .+.++ .+++++++  +.++.+|+..+.++....+ +-..
T Consensus       125 p~~-----~~~~~~~l~~-~g~~-~~d~pv~g~~~a~---~g~l~-i~vgg~~~--~~~~~ll~~~g~~v~~~g~~~g~a  191 (317)
T 4ezb_A          125 PDT-----KALAAGAIAT-GKGS-FVEGAVMARVPPY---AEKVP-ILVAGRRA--VEVAERLNALGMNLEAVGETPGQA  191 (317)
T ss_dssp             HHH-----HHHHHHHHHT-SSCE-EEEEEECSCSTTT---GGGSE-EEEESTTH--HHHHHHHHTTTCEEEEEESSTTHH
T ss_pred             HHH-----HHHHHHHHHH-cCCe-EEeccCCCCchhh---cCCEE-EEEeCChH--HHHHHHHHHhCCCeEEeCCCcCHH
Confidence            432     1222333322 1211 1113467786543   33333 34455444  8899999988888876666 7777


Q ss_pred             HHHHHHHHHH
Q 019978          281 EVMGGLKNVY  290 (333)
Q Consensus       281 e~~~alkNv~  290 (333)
                      ++.+...|.+
T Consensus       192 ~~~Kl~~N~~  201 (317)
T 4ezb_A          192 SSLKMIRSVM  201 (317)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888888864

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.48  E-value=8.7e-14  Score=134.93  Aligned_cols=171  Identities=13%  Similarity=0.127  Sum_probs=115.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      .|||+|||+|.||..+|..|++. |     ++|++|+|++++++++..                                
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~-G-----~~V~v~dr~~~~~~~l~~--------------------------------   63 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKG-G-----HECVVYDLNVNAVQALER--------------------------------   63 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHT--------------------------------
T ss_pred             CCEEEEECchHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHHHHHH--------------------------------
Confidence            48999999999999999999999 8     999999999876543210                                


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCC---CEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDA---DIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~a---DlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                             ..+...+++++++.++   |+||++||+..++++++++.+.+++   +++||+++++
T Consensus        64 -----------------------~g~~~~~s~~e~~~~a~~~DvVi~~vp~~~v~~vl~~l~~~l~~---g~iiId~st~  117 (358)
T 4e21_A           64 -----------------------EGIAGARSIEEFCAKLVKPRVVWLMVPAAVVDSMLQRMTPLLAA---NDIVIDGGNS  117 (358)
T ss_dssp             -----------------------TTCBCCSSHHHHHHHSCSSCEEEECSCGGGHHHHHHHHGGGCCT---TCEEEECSSC
T ss_pred             -----------------------CCCEEeCCHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHhhCCC---CCEEEeCCCC
Confidence                                   0233456788888888   9999999999999999999998877   7888887766


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCC-----------
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPH-----------  268 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~-----------  268 (333)
                      .....      ....+.+.+ .+.......+..||..+.   .+ + .++++++++..+.++.+|+..+           
T Consensus       118 ~~~~~------~~~~~~l~~-~g~~~vdapVsGg~~~a~---~G-~-~im~GG~~~a~~~~~~ll~~lg~~~~~~~~~~~  185 (358)
T 4e21_A          118 HYQDD------IRRADQMRA-QGITYVDVGTSGGIFGLE---RG-Y-CLMIGGEKQAVERLDPVFRTLAPGIGAAPRTPG  185 (358)
T ss_dssp             CHHHH------HHHHHHHHT-TTCEEEEEEEECGGGHHH---HC-C-EEEEESCHHHHHHTHHHHHHHSCCGGGSCCCTT
T ss_pred             ChHHH------HHHHHHHHH-CCCEEEeCCCCCCHHHHh---cC-C-eeeecCCHHHHHHHHHHHHHhccccccCccccc
Confidence            54321      111121211 121111233555565443   33 3 3456777777777777776544           


Q ss_pred             ---------eEEEecCChhHHHHHHHHHHH
Q 019978          269 ---------FTVWDNGDLVTHEVMGGLKNV  289 (333)
Q Consensus       269 ---------~~v~~s~Di~gve~~~alkNv  289 (333)
                               -.+.+..+.-..++.+.+.|.
T Consensus       186 ~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~  215 (358)
T 4e21_A          186 REKREGTAELGYLHCGPSGAGHFVKMVHNG  215 (358)
T ss_dssp             GGGCCSSGGGTEEEEESTTHHHHHHHHHHH
T ss_pred             ccccccccccceEEECCccHHHHHHHHHHH
Confidence                     234444455455777777775

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.47  E-value=2.8e-13  Score=128.96  Aligned_cols=161  Identities=17%  Similarity=0.138  Sum_probs=106.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCe--eEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~--~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      +|||+|||+|.||+++|..|.+. |     +  +|++|+|+++.++++..                       . +.   
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~-G-----~~~~V~~~dr~~~~~~~a~~-----------------------~-G~---   79 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRS-G-----FKGKIYGYDINPESISKAVD-----------------------L-GI---   79 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHT-T-----CCSEEEEECSCHHHHHHHHH-----------------------T-TS---
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhC-C-----CCCEEEEEECCHHHHHHHHH-----------------------C-CC---
Confidence            48999999999999999999999 8     7  99999999875542110                       0 00   


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHH-HhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE-AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~e-a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                                ....++++++ ++++||+||+|||.+.+.++++++.+++++   +++|++++. 
T Consensus        80 --------------------------~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l~~~l~~---~~iv~d~~S-  129 (314)
T 3ggo_A           80 --------------------------IDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSE---DATVTDQGS-  129 (314)
T ss_dssp             --------------------------CSEEESCTTGGGGGCCSEEEECSCGGGHHHHHHHHHHHSCT---TCEEEECCS-
T ss_pred             --------------------------cchhcCCHHHHhhccCCEEEEeCCHHHHHHHHHHHhhccCC---CcEEEECCC-
Confidence                                      0134567777 789999999999999999999999999887   777776542 


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCC---CCcEE--EEcCCCchH-HHhccCceeEEEe--CChhhHHHHHHHhCCCCeEE
Q 019978          200 VEAELEAVPRIITPTQMINRATGVP---IENIL--YLGGPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTV  271 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~---~~~~~--vl~GP~~a~-ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v  271 (333)
                      +...         +.+.+++.++..   .+|+.  ..+||..+. ++..+.++.++..  .+++..+.++++|+..|.++
T Consensus       130 vk~~---------~~~~~~~~l~~~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~v  200 (314)
T 3ggo_A          130 VKGK---------LVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVV  200 (314)
T ss_dssp             CCTH---------HHHHHHHHHGGGEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTTSCHHHHHHHHHHHHHTTCEE
T ss_pred             CcHH---------HHHHHHHhcCCCEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCCCCHHHHHHHHHHHHHcCCEE
Confidence            2111         123344444211   01110  112343333 2334444333322  35678999999999999877


Q ss_pred             EecC
Q 019978          272 WDNG  275 (333)
Q Consensus       272 ~~s~  275 (333)
                      +..+
T Consensus       201 ~~~~  204 (314)
T 3ggo_A          201 EYMS  204 (314)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            6543

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.47  E-value=2.6e-13  Score=126.32  Aligned_cols=164  Identities=15%  Similarity=0.093  Sum_probs=108.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      +|||+|||+|+||+++|..|++. |.   +++|++|+|++++++++..         .               +.     
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~-g~---~~~V~~~d~~~~~~~~~~~---------~---------------g~-----   52 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRD-HP---HYKIVGYNRSDRSRDIALE---------R---------------GI-----   52 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-CT---TSEEEEECSSHHHHHHHHH---------T---------------TS-----
T ss_pred             cceEEEEeeCHHHHHHHHHHHhC-CC---CcEEEEEcCCHHHHHHHHH---------c---------------CC-----
Confidence            58999999999999999999987 51   2689999998865442110         0               00     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhh-hhccCCCCEEEEeeecCc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVE  201 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~-l~~~~~~~~Ivs~~kGi~  201 (333)
                                              ....+++++++++++|+||+|||++...++++++.++ +++   +++|++++++..
T Consensus        53 ------------------------~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~l~~~~l~~---~~ivi~~~~~~~  105 (290)
T 3b1f_A           53 ------------------------VDEATADFKVFAALADVIILAVPIKKTIDFIKILADLDLKE---DVIITDAGSTKY  105 (290)
T ss_dssp             ------------------------CSEEESCTTTTGGGCSEEEECSCHHHHHHHHHHHHTSCCCT---TCEEECCCSCHH
T ss_pred             ------------------------cccccCCHHHhhcCCCEEEEcCCHHHHHHHHHHHHhcCCCC---CCEEEECCCCch
Confidence                                    0134456667788999999999999999999999988 876   677765543222


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCcEE--------EEcCCCchH-HHhccCceeEEE--eCChhhHHHHHHHhCCCCeE
Q 019978          202 AELEAVPRIITPTQMINRATGVPIENIL--------YLGGPNIAS-EIYNKEYANARI--CGAEKWRKPLAKFLRRPHFT  270 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~--------vl~GP~~a~-ev~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~  270 (333)
                      ..          .+.+.+.++.....+.        ..+||..+. ++..+.++..+.  ..+++..+.++++|+..|++
T Consensus       106 ~~----------~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~G~~  175 (290)
T 3b1f_A          106 EI----------VRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTKPNTIPALQDLLSGLHAR  175 (290)
T ss_dssp             HH----------HHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCCTTHHHHHHHHTGGGCCE
T ss_pred             HH----------HHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCE
Confidence            11          1345555542011111        112566543 344554444333  24567899999999999998


Q ss_pred             EEecCC
Q 019978          271 VWDNGD  276 (333)
Q Consensus       271 v~~s~D  276 (333)
                      ++..++
T Consensus       176 ~~~~~~  181 (290)
T 3b1f_A          176 YVEIDA  181 (290)
T ss_dssp             EEECCH
T ss_pred             EEEcCH
Confidence            876654

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=99.46  E-value=1.4e-12  Score=115.76  Aligned_cols=185  Identities=15%  Similarity=0.224  Sum_probs=121.3

Q ss_pred             ceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        44 ~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      |||+|+| +|.||++++..|++. |     ++|++|+|++++++++..+.        .          .+++.      
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~-g-----~~V~~~~r~~~~~~~~~~~~--------~----------~~~~~------   50 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATL-G-----HEIVVGSRREEKAEAKAAEY--------R----------RIAGD------   50 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTT-T-----CEEEEEESSHHHHHHHHHHH--------H----------HHHSS------
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHHHh--------c----------ccccc------
Confidence            6999999 999999999999998 8     89999999987654322100        0          00100      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                                             ..+. .++++++++++|+||+++|++.++++++++.+.++    +++++++++|+..
T Consensus        51 -----------------------~~~~-~~~~~~~~~~~D~Vi~~~~~~~~~~~~~~l~~~~~----~~~vi~~~~g~~~  102 (212)
T 1jay_A           51 -----------------------ASIT-GMKNEDAAEACDIAVLTIPWEHAIDTARDLKNILR----EKIVVSPLVPVSR  102 (212)
T ss_dssp             -----------------------CCEE-EEEHHHHHHHCSEEEECSCHHHHHHHHHHTHHHHT----TSEEEECCCCEEC
T ss_pred             -----------------------CCCC-hhhHHHHHhcCCEEEEeCChhhHHHHHHHHHHHcC----CCEEEEcCCCcCc
Confidence                                   0243 35677778899999999999999999999988773    5799999999985


Q ss_pred             cccCC--ccCCCHHHHHHhHhCCCCCcEEEEcCCCc-hHHHhc--cCcee-EEEeC-ChhhHHHHHHHhCCC-CeEEEec
Q 019978          203 ELEAV--PRIITPTQMINRATGVPIENILYLGGPNI-ASEIYN--KEYAN-ARICG-AEKWRKPLAKFLRRP-HFTVWDN  274 (333)
Q Consensus       203 ~~~~~--~~~~~~se~i~~~lg~~~~~~~vl~GP~~-a~ev~~--~~~~~-~~~~~-~~~~~~~l~~ll~~~-~~~v~~s  274 (333)
                      ++...  .......+.+++.++.  ..+ +...|.. +.....  ..... ...++ +++..+.++++|+.. +..+...
T Consensus       103 ~~~~~~~~~g~~~~~~l~~~~~~--~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~l~~~~~G~~~~~~  179 (212)
T 1jay_A          103 GAKGFTYSSERSAAEIVAEVLES--EKV-VSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDA  179 (212)
T ss_dssp             CTTCCEECCSSCHHHHHHHHHTC--SCE-EECCTTCCHHHHHCTTCCCCEEEEEEESCHHHHHHHHHHHHHSTTEEEEEE
T ss_pred             CCceeecCCCCcHHHHHHHhCCC--CeE-EEEccchHHHHhhCcCCCCCccEEEECCcHHHHHHHHHHHHHcCCCCceec
Confidence            31000  0011224557777752  222 3344444 333332  11111 23334 467889999999999 9988777


Q ss_pred             CChhHHHHHHHHHHH
Q 019978          275 GDLVTHEVMGGLKNV  289 (333)
Q Consensus       275 ~Di~gve~~~alkNv  289 (333)
                      .++-...|.+.+-|.
T Consensus       180 ~~~~~a~~~k~~~~~  194 (212)
T 1jay_A          180 GPLSNSRLVESLTPL  194 (212)
T ss_dssp             ESGGGHHHHHTHHHH
T ss_pred             cchhHHHHhcchHHH
Confidence            776555665555443

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.46  E-value=1.2e-12  Score=119.84  Aligned_cols=153  Identities=16%  Similarity=0.140  Sum_probs=108.7

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ++|||+|||+|.||.+++..|.+. |     ++|.+|+|++++++++..        .              +       
T Consensus         2 ~~m~i~iiG~G~mG~~~a~~l~~~-g-----~~v~~~~~~~~~~~~~~~--------~--------------~-------   46 (259)
T 2ahr_A            2 NAMKIGIIGVGKMASAIIKGLKQT-P-----HELIISGSSLERSKEIAE--------Q--------------L-------   46 (259)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTS-S-----CEEEEECSSHHHHHHHHH--------H--------------H-------
T ss_pred             CccEEEEECCCHHHHHHHHHHHhC-C-----CeEEEECCCHHHHHHHHH--------H--------------c-------
Confidence            468999999999999999999988 7     899999999876543210        0              0       


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                               .+...++++++++++|+||+++|++.+.+++.++.    +   ++++|+.++|+.
T Consensus        47 -------------------------g~~~~~~~~~~~~~~D~Vi~~v~~~~~~~v~~~l~----~---~~~vv~~~~~~~   94 (259)
T 2ahr_A           47 -------------------------ALPYAMSHQDLIDQVDLVILGIKPQLFETVLKPLH----F---KQPIISMAAGIS   94 (259)
T ss_dssp             -------------------------TCCBCSSHHHHHHTCSEEEECSCGGGHHHHHTTSC----C---CSCEEECCTTCC
T ss_pred             -------------------------CCEeeCCHHHHHhcCCEEEEEeCcHhHHHHHHHhc----c---CCEEEEeCCCCC
Confidence                                     12234677788889999999999999988887753    3   678888888877


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeC--ChhhHHHHHHHhCCCCeEEEecCC
Q 019978          202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNGD  276 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~--~~~~~~~l~~ll~~~~~~v~~s~D  276 (333)
                      .+            .+++.++.. .++ +...|+++..+.++ ...++.+.  +++..+.++++|+..+..++..++
T Consensus        95 ~~------------~l~~~~~~~-~~~-v~~~p~~~~~~~~g-~~~i~~~~~~~~~~~~~~~~ll~~~G~~~~~~~~  156 (259)
T 2ahr_A           95 LQ------------RLATFVGQD-LPL-LRIMPNMNAQILQS-STALTGNALVSQELQARVRDLTDSFGSTFDISEK  156 (259)
T ss_dssp             HH------------HHHHHHCTT-SCE-EEEECCGGGGGTCE-EEEEEECTTCCHHHHHHHHHHHHTTEEEEECCGG
T ss_pred             HH------------HHHHhcCCC-CCE-EEEcCCchHHHcCc-eEEEEcCCCCCHHHHHHHHHHHHhCCCEEEecHH
Confidence            53            356666532 223 34678888776666 22223333  567889999999998854444443

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.46  E-value=3.3e-13  Score=135.68  Aligned_cols=158  Identities=14%  Similarity=0.106  Sum_probs=106.6

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .+|+|+|||+|.||++||..|+++ |     ++|++|+|++++++++..++                     ..+     
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~-G-----~~V~v~dr~~~~~~~l~~~g---------------------~~g-----   50 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDH-G-----FVVCAFNRTVSKVDDFLANE---------------------AKG-----   50 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSTHHHHHHHHTT---------------------TTT-----
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHhcc---------------------cCC-----
Confidence            358999999999999999999999 8     99999999998765432110                     000     


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc---CCCEEEEecCch-hHHHHHHHHHhhhhccCCCCEEEEee
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW---DADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLA  197 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~---~aDlIIlaVps~-~~~~vl~~i~~~l~~~~~~~~Ivs~~  197 (333)
                                              ..+..+++++++++   ++|+||++||+. .++++++++.+++++   +++||.++
T Consensus        51 ------------------------~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~~l~~~L~~---g~iIId~s  103 (484)
T 4gwg_A           51 ------------------------TKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDT---GDIIIDGG  103 (484)
T ss_dssp             ------------------------SSCEECSSHHHHHHTBCSSCEEEECSCSSHHHHHHHHHHGGGCCT---TCEEEECS
T ss_pred             ------------------------CceeccCCHHHHHhhccCCCEEEEecCChHHHHHHHHHHHHhcCC---CCEEEEcC
Confidence                                    13455677888776   599999999994 899999999999887   78899888


Q ss_pred             ecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeE
Q 019978          198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFT  270 (333)
Q Consensus       198 kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~  270 (333)
                      ++....+      ....+.+.+ .|.......+..||..+.   .+ + .++++++++..+.++.+|+..+-+
T Consensus       104 t~~~~~t------~~~~~~l~~-~Gi~fvd~pVsGg~~gA~---~G-~-~im~GG~~ea~~~v~pll~~ig~~  164 (484)
T 4gwg_A          104 NSEYRDT------TRRCRDLKA-KGILFVGSGVSGGEEGAR---YG-P-SLMPGGNKEAWPHIKTIFQGIAAK  164 (484)
T ss_dssp             CCCHHHH------HHHHHHHHH-TTCEEEEEEEESHHHHHH---HC-C-EEEEEECGGGHHHHHHHHHHHSCB
T ss_pred             CCCchHH------HHHHHHHHh-hccccccCCccCCHHHHh---cC-C-eeecCCCHHHHHHHHHHHHHhcCc
Confidence            7766432      111222222 132111122334443332   23 3 345667778888888888764443

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=99.42  E-value=1.3e-12  Score=122.74  Aligned_cols=183  Identities=14%  Similarity=0.148  Sum_probs=110.7

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .++||+|||+|.||+++|..|+++ |     ++|++|+++++++++... .    +.+.   ++++..... +.....  
T Consensus        14 ~~~~I~VIG~G~mG~~iA~~la~~-G-----~~V~~~d~~~~~~~~~~~-~----i~~~---l~~~~~~g~-~~~~~~--   76 (302)
T 1f0y_A           14 IVKHVTVIGGGLMGAGIAQVAAAT-G-----HTVVLVDQTEDILAKSKK-G----IEES---LRKVAKKKF-AENPKA--   76 (302)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHH-H----HHHH---HHHHHHTTS-SSCHHH--
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHH-H----HHHH---HHHHHHcCC-CCcccc--
Confidence            467999999999999999999999 8     999999999887664321 1    1110   000000000 000000  


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~--~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                        ..+..++             ...++.+++|+++++++||+||+|||++.  .+++++++.+++++   +++|++.++|
T Consensus        77 --~~~~~~~-------------~~~~i~~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~---~~iv~s~ts~  138 (302)
T 1f0y_A           77 --GDEFVEK-------------TLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAE---HTIFASNTSS  138 (302)
T ss_dssp             --HHHHHHH-------------HHHTEEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCT---TCEEEECCSS
T ss_pred             --chhhHHH-------------HHhceEEecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCC---CeEEEECCCC
Confidence              0000000             00157788999888999999999999864  67889999988876   7888888888


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeC---ChhhHHHHHHHhCCCCeEEEecCC
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG---AEKWRKPLAKFLRRPHFTVWDNGD  276 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~---~~~~~~~l~~ll~~~~~~v~~s~D  276 (333)
                      +...           + +.+.++.+ ..+ +-..|..+...  . +...++.+   +++..+.+.++|...+..+....|
T Consensus       139 i~~~-----------~-l~~~~~~~-~~~-~g~h~~~P~~~--~-~~~~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~  201 (302)
T 1f0y_A          139 LQIT-----------S-IANATTRQ-DRF-AGLHFFNPVPV--M-KLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKD  201 (302)
T ss_dssp             SCHH-----------H-HHTTSSCG-GGE-EEEEECSSTTT--C-CEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCHH-----------H-HHHhcCCc-ccE-EEEecCCCccc--C-ceEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecC
Confidence            7754           2 44444322 112 11222222111  1 22223322   567888888888877766555445

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.42  E-value=1.4e-12  Score=123.45  Aligned_cols=181  Identities=17%  Similarity=0.200  Sum_probs=118.6

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .|+||++||.|.||..||..|.++ |     |+|++|+|++++++++..                               
T Consensus         2 ~M~kIgfIGlG~MG~~mA~~L~~~-G-----~~v~v~dr~~~~~~~l~~-------------------------------   44 (300)
T 3obb_A            2 HMKQIAFIGLGHMGAPMATNLLKA-G-----YLLNVFDLVQSAVDGLVA-------------------------------   44 (300)
T ss_dssp             -CCEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSSHHHHHHHHH-------------------------------
T ss_pred             CcCEEEEeeehHHHHHHHHHHHhC-C-----CeEEEEcCCHHHHHHHHH-------------------------------
Confidence            577999999999999999999999 8     999999999876543210                               


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHH---HHhhhhccCCCCEEEEee
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE---ISRYWKERITVPVIISLA  197 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~~---i~~~l~~~~~~~~Ivs~~  197 (333)
                                              ......+++.++++++|+||.|+|.. .+++++..   +.+.+.+   ++++|.++
T Consensus        45 ------------------------~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~---g~iiId~s   97 (300)
T 3obb_A           45 ------------------------AGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAP---GTLVLECS   97 (300)
T ss_dssp             ------------------------TTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSSTTSCCC----CEEEECS
T ss_pred             ------------------------cCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhhhhcCCC---CCEEEECC
Confidence                                    02455678899999999999999975 68888765   3444454   67787765


Q ss_pred             ecCcccccCCccCCCHHHHHHhHh---CCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEec
Q 019978          198 KGVEAELEAVPRIITPTQMINRAT---GVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDN  274 (333)
Q Consensus       198 kGi~~~~~~~~~~~~~se~i~~~l---g~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s  274 (333)
                      .. .+++         +..+.+.+   |.......|..||..|.   .|..+ ++++++++..++++.+|+..+-++++.
T Consensus        98 T~-~p~~---------~~~~a~~~~~~G~~~lDaPVsGg~~~A~---~G~L~-imvGG~~~~~~~~~p~l~~~g~~i~~~  163 (300)
T 3obb_A           98 TI-APTS---------ARKIHAAARERGLAMLDAPVSGGTAGAA---AGTLT-FMVGGDAEALEKARPLFEAMGRNIFHA  163 (300)
T ss_dssp             CC-CHHH---------HHHHHHHHHTTTCEEEECCEESCHHHHH---HTCEE-EEEESCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             CC-CHHH---------HHHHHHHHHHcCCEEEecCCCCCHHHHH---hCCEE-EEEeCCHHHHHHHHHHHHHhCCCEEEe
Confidence            33 3321         12233333   21111112344444432   33223 356888888999999998877777766


Q ss_pred             CChhHHHHHHHHHHHHHH--HHHHHhcc
Q 019978          275 GDLVTHEVMGGLKNVYAI--GAGMVAAL  300 (333)
Q Consensus       275 ~Di~gve~~~alkNv~Ai--~~Gi~~gl  300 (333)
                      .+.=.-...+...|.+..  ..++++++
T Consensus       164 G~~G~g~~~Kl~~N~l~~~~~~a~aEa~  191 (300)
T 3obb_A          164 GPDGAGQVAKVCNNQLLAVLMIGTAEAM  191 (300)
T ss_dssp             ESTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666445677777776332  24444444

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.42  E-value=4.5e-13  Score=124.87  Aligned_cols=153  Identities=16%  Similarity=0.142  Sum_probs=107.7

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      +|||+|||+ |.||+++|..|++. |     ++|++|+|++++++++..                        .      
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~-g-----~~V~~~~r~~~~~~~~~~------------------------~------   54 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDS-A-----HHLAAIEIAPEGRDRLQG------------------------M------   54 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHS-S-----SEEEEECCSHHHHHHHHH------------------------T------
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHh------------------------c------
Confidence            479999999 99999999999998 8     899999999865432110                        0      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                               .+.. +++.++++++|+||+|||++.+.++++++.+++++   +++|+++++|.+
T Consensus        55 -------------------------g~~~-~~~~~~~~~aDvVi~av~~~~~~~v~~~l~~~l~~---~~ivv~~s~~~~  105 (286)
T 3c24_A           55 -------------------------GIPL-TDGDGWIDEADVVVLALPDNIIEKVAEDIVPRVRP---GTIVLILDAAAP  105 (286)
T ss_dssp             -------------------------TCCC-CCSSGGGGTCSEEEECSCHHHHHHHHHHHGGGSCT---TCEEEESCSHHH
T ss_pred             -------------------------CCCc-CCHHHHhcCCCEEEEcCCchHHHHHHHHHHHhCCC---CCEEEECCCCch
Confidence                                     0111 13446678999999999999999999999988876   788999888875


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH--------HhccCce-------eEE-EeCChhhHHHHHHHhC
Q 019978          202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--------IYNKEYA-------NAR-ICGAEKWRKPLAKFLR  265 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e--------v~~~~~~-------~~~-~~~~~~~~~~l~~ll~  265 (333)
                      ...            +++..+  .. ..+...|.++.+        +..+.++       ..+ ...+++..+.++++|+
T Consensus       106 ~~~------------l~~~~~--~~-~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~~~~~~~~v~~l~~  170 (286)
T 3c24_A          106 YAG------------VMPERA--DI-TYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADICE  170 (286)
T ss_dssp             HHT------------CSCCCT--TS-EEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEESCTHHHHHHHHHHH
T ss_pred             hHH------------HHhhhC--CC-eEEecCCCCccccccccchhhccCcccccccceeeeeccCCCHHHHHHHHHHHH
Confidence            431            222111  11 223366777544        6666432       212 2456678999999999


Q ss_pred             CCCe---EEEecC
Q 019978          266 RPHF---TVWDNG  275 (333)
Q Consensus       266 ~~~~---~v~~s~  275 (333)
                      ..+.   +++..+
T Consensus       171 ~~G~~~~~~~~v~  183 (286)
T 3c24_A          171 TMWSPVTRTHRVT  183 (286)
T ss_dssp             HHTCSEEEEEECC
T ss_pred             HhcCCcceEEEeC
Confidence            8888   665544

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.41  E-value=7.5e-12  Score=114.75  Aligned_cols=161  Identities=14%  Similarity=0.171  Sum_probs=101.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEec--CCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR--PGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      |||+|||+|+||+++|..|++. |     ++|++|+|  +++.++++.         +                      
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~-g-----~~V~~~~~~~~~~~~~~~~---------~----------------------   43 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSR-G-----VEVVTSLEGRSPSTIERAR---------T----------------------   43 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT-T-----CEEEECCTTCCHHHHHHHH---------H----------------------
T ss_pred             CeEEEEechHHHHHHHHHHHHC-C-----CeEEEeCCccCHHHHHHHH---------H----------------------
Confidence            6999999999999999999998 8     99999987  332222110         0                      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                  .            .+.  ++++++++++|+||++||++...+.+.++.+.++    + +++++ +++.
T Consensus        44 ------------~------------g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~~~~~~~~~----~-~vi~~-s~~~   91 (264)
T 1i36_A           44 ------------V------------GVT--ETSEEDVYSCPVVISAVTPGVALGAARRAGRHVR----G-IYVDI-NNIS   91 (264)
T ss_dssp             ------------H------------TCE--ECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTCC----S-EEEEC-SCCC
T ss_pred             ------------C------------CCc--CCHHHHHhcCCEEEEECCCHHHHHHHHHHHHhcC----c-EEEEc-cCCC
Confidence                        0            122  4566778899999999999865555666665543    4 56655 4554


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCC-CcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEe-cCChhH
Q 019978          202 AELEAVPRIITPTQMINRATGVPI-ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD-NGDLVT  279 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~-~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~-s~Di~g  279 (333)
                      +.+         .+.+.+.++... ....+..+|..+   ..+.+  ++.+++..  +.+++ |+..+.++.. .+++-.
T Consensus        92 ~~~---------~~~l~~~~~~~g~~~~~v~~~~~~~---~~g~~--~~~~g~~~--~~~~~-l~~~g~~~~~~~~~~g~  154 (264)
T 1i36_A           92 PET---------VRMASSLIEKGGFVDAAIMGSVRRK---GADIR--IIASGRDA--EEFMK-LNRYGLNIEVRGREPGD  154 (264)
T ss_dssp             HHH---------HHHHHHHCSSSEEEEEEECSCHHHH---GGGCE--EEEESTTH--HHHHG-GGGGTCEEEECSSSTTH
T ss_pred             HHH---------HHHHHHHHhhCCeeeeeeeCCcccc---ccCCe--EEecCCcH--HHhhh-HHHcCCeeEECCCCcCH
Confidence            431         134556564211 012233444322   23433  34444433  78888 9988887655 444666


Q ss_pred             HHHHHHHHHHH
Q 019978          280 HEVMGGLKNVY  290 (333)
Q Consensus       280 ve~~~alkNv~  290 (333)
                      ..|.+..-|.+
T Consensus       155 ~~~~kl~~n~~  165 (264)
T 1i36_A          155 ASAIKMLRSSY  165 (264)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            78888777764

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.40  E-value=2.1e-12  Score=115.96  Aligned_cols=167  Identities=11%  Similarity=0.096  Sum_probs=112.4

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .+|||+|||+|.||++++..|++. |     ++|++|+|++++++++.                         .      
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~-g-----~~V~~~~r~~~~~~~~~-------------------------~------   69 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGS-G-----FKVVVGSRNPKRTARLF-------------------------P------   69 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSHHHHHHHS-------------------------B------
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHH-------------------------H------
Confidence            358999999999999999999998 8     89999999876543210                         0      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                              ..+..+ +++++++++|+||+++|++.++++++ +.+++ +   +++++++++|+.
T Consensus        70 ------------------------~g~~~~-~~~~~~~~~DvVi~av~~~~~~~v~~-l~~~~-~---~~~vv~~s~g~~  119 (215)
T 2vns_A           70 ------------------------SAAQVT-FQEEAVSSPEVIFVAVFREHYSSLCS-LSDQL-A---GKILVDVSNPTE  119 (215)
T ss_dssp             ------------------------TTSEEE-EHHHHTTSCSEEEECSCGGGSGGGGG-GHHHH-T---TCEEEECCCCCH
T ss_pred             ------------------------cCCcee-cHHHHHhCCCEEEECCChHHHHHHHH-HHHhc-C---CCEEEEeCCCcc
Confidence                                    012333 67778889999999999988878775 66665 4   689999999987


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchH----HHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCCh
Q 019978          202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS----EIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL  277 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~----ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di  277 (333)
                      ....  .......+++.+.++.  .++.-...+-.+.    .+..+.+...+.+.+++..+.++++|+..|++++...++
T Consensus       120 ~~~l--~~~~~~~~~l~~~l~~--~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~~ll~~~G~~~~~~g~~  195 (215)
T 2vns_A          120 QEHL--QHRESNAEYLASLFPT--CTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKRAVSEMALAMGFMPVDMGSL  195 (215)
T ss_dssp             HHHH--HCSSCHHHHHHHHCTT--SEEEEECTTBCHHHHHTCSCSSCCEEEEEESCHHHHHHHHHHHHHTTCEEEECCSG
T ss_pred             cccc--cccccHHHHHHHHCCC--CeEEeccccccHhHhcccccCCceeEEEecCCHHHHHHHHHHHHHcCCceEeecch
Confidence            6421  0113456777777752  2221111111111    111222222334557788999999999999999888886


Q ss_pred             hH
Q 019978          278 VT  279 (333)
Q Consensus       278 ~g  279 (333)
                      -.
T Consensus       196 ~~  197 (215)
T 2vns_A          196 AS  197 (215)
T ss_dssp             GG
T ss_pred             hh
Confidence            43

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.39  E-value=3.9e-12  Score=118.75  Aligned_cols=181  Identities=13%  Similarity=0.135  Sum_probs=112.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcc-cccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRC-AYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~-~~l~~~~~~~  121 (333)
                      ++||+|||+|.||+++|..|+.+ |     ++|++|+++++.++++...     +...   +.++.... .....     
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~~~~~~~~-----i~~~---~~~~~~~g~~~~~~-----   64 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFH-G-----FAVTAYDINTDALDAAKKR-----FEGL---AAVYEKEVAGAADG-----   64 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSHHHHHHHHHH-----HHHH---HHHHHHHSTTCTTT-----
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHHH-----HHHH---HHHHHHhcccCCHH-----
Confidence            57999999999999999999999 8     9999999999876654321     1110   01100000 00000     


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                         .  .++.             +.++..++++++++++||+||+++|++  ...++++++.+++++   ++++++.+++
T Consensus        65 ---~--~~~~-------------~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~---~~il~s~tS~  123 (283)
T 4e12_A           65 ---A--AQKA-------------LGGIRYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPA---KTIFATNSST  123 (283)
T ss_dssp             ---H--HHHH-------------HHHCEEESCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCT---TCEEEECCSS
T ss_pred             ---H--HHHH-------------HcCeEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence               0  0000             014677899998899999999999998  889999999998887   7888888877


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEe--CChhhHHHHHHHhCCCCeEEEec-CC
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN-GD  276 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v~~s-~D  276 (333)
                      +...           + +.+.++.+ ..+. -..|..+.  .......++..  .+++..+.+..++...+..+... .|
T Consensus       124 ~~~~-----------~-la~~~~~~-~~~i-g~h~~~p~--~~~~lvevv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~  187 (283)
T 4e12_A          124 LLPS-----------D-LVGYTGRG-DKFL-ALHFANHV--WVNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKE  187 (283)
T ss_dssp             SCHH-----------H-HHHHHSCG-GGEE-EEEECSST--TTSCEEEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSC
T ss_pred             CCHH-----------H-HHhhcCCC-cceE-EEccCCCc--ccCceEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEEecC
Confidence            6543           2 45555432 1221 11122111  11212222222  25677888889998877655543 55


Q ss_pred             hhH
Q 019978          277 LVT  279 (333)
Q Consensus       277 i~g  279 (333)
                      .-|
T Consensus       188 ~~g  190 (283)
T 4e12_A          188 KAG  190 (283)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            444

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.38  E-value=3.8e-12  Score=120.22  Aligned_cols=170  Identities=21%  Similarity=0.280  Sum_probs=106.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      +||+|||.|.||..||..|+++ |     |+|++|+|++++++++..                                 
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~l~~---------------------------------   46 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEA-G-----YELVVWNRTASKAEPLTK---------------------------------   46 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEC-------CTTTT---------------------------------
T ss_pred             CcEEEEecHHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHH---------------------------------
Confidence            3899999999999999999999 8     999999999986643210                                 


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecCc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                            ......+++.++++.+|+||+++|.. .+++++ ..+.+.+++   ++++|.++. +.
T Consensus        47 ----------------------~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~~~~~---~~iiid~sT-~~  100 (297)
T 4gbj_A           47 ----------------------LGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVEKLGK---DGVHVSMST-IS  100 (297)
T ss_dssp             ----------------------TTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHHHHCT---TCEEEECSC-CC
T ss_pred             ----------------------cCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHhhcCC---CeEEEECCC-CC
Confidence                                  13455678888999999999999976 455554 556666666   677776653 33


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHH--hccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCC-hh
Q 019978          202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI--YNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD-LV  278 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev--~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~D-i~  278 (333)
                      +++         ++.+.+.+..  ..+.++-.|......  ..+ ...++++++++..++++.+|+..+-+++...+ +=
T Consensus       101 p~~---------~~~~~~~~~~--~g~~~ldapVsGg~~~a~~g-~l~im~gG~~~~~~~~~~~l~~~g~~i~~~g~~~G  168 (297)
T 4gbj_A          101 PET---------SRQLAQVHEW--YGAHYVGAPIFARPEAVRAK-VGNICLSGNAGAKERIKPIVENFVKGVFDFGDDPG  168 (297)
T ss_dssp             HHH---------HHHHHHHHHH--TTCEEEECCEECCHHHHHHT-CCEEEEEECHHHHHHHHHHHHTTCSEEEECCSCTT
T ss_pred             hHH---------HHHHHHHHHh--cCCceecCCcCCCccccccc-cceeecccchhHHHHHHHHHHHhhCCeEEecCCcc
Confidence            331         1223332211  112344444443221  223 22245677888899999999998888776654 44


Q ss_pred             HHHHHHHHHHHH
Q 019978          279 THEVMGGLKNVY  290 (333)
Q Consensus       279 gve~~~alkNv~  290 (333)
                      ..+..+...|.+
T Consensus       169 ~g~~~Kl~~N~~  180 (297)
T 4gbj_A          169 AANVIKLAGNFM  180 (297)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            456777777763

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.38  E-value=5.6e-12  Score=118.63  Aligned_cols=154  Identities=21%  Similarity=0.201  Sum_probs=103.0

Q ss_pred             CceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ++||+||| +|.||+++|..|++. |     ++|++|+|+++.                                     
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~-G-----~~V~~~~~~~~~-------------------------------------   57 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRAS-G-----YPISILDREDWA-------------------------------------   57 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTT-T-----CCEEEECTTCGG-------------------------------------
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhC-C-----CeEEEEECCccc-------------------------------------
Confidence            35999999 999999999999998 8     899999887531                                     


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                                     +..+++.++|+||+|||++.+.++++++.+++++   +++|+.+ .|+.
T Consensus        58 -------------------------------~~~~~~~~aDvVilavp~~~~~~vl~~l~~~l~~---~~iv~~~-~svk  102 (298)
T 2pv7_A           58 -------------------------------VAESILANADVVIVSVPINLTLETIERLKPYLTE---NMLLADL-TSVK  102 (298)
T ss_dssp             -------------------------------GHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCT---TSEEEEC-CSCC
T ss_pred             -------------------------------CHHHHhcCCCEEEEeCCHHHHHHHHHHHHhhcCC---CcEEEEC-CCCC
Confidence                                           1234577899999999999999999999998876   6655544 3433


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCChhHHH
Q 019978          202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE  281 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di~gve  281 (333)
                      ..         +.+.+.+.++....+..-+.||..  +...+.++..+...+++..+.++++|+..|.+++..++....+
T Consensus       103 ~~---------~~~~~~~~~~~~~v~~hP~~g~~~--~~~~g~~~~l~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~~d~  171 (298)
T 2pv7_A          103 RE---------PLAKMLEVHTGAVLGLHPMFGADI--ASMAKQVVVRCDGRFPERYEWLLEQIQIWGAKIYQTNATEHDH  171 (298)
T ss_dssp             HH---------HHHHHHHHCSSEEEEEEECSCTTC--SCCTTCEEEEEEEECGGGTHHHHHHHHHTTCEEEECCHHHHHH
T ss_pred             cH---------HHHHHHHhcCCCEEeeCCCCCCCc--hhhcCCeEEEecCCCHHHHHHHHHHHHHcCCEEEECCHHHHHH
Confidence            21         112233333311001112345554  2234443333333356788999999999999888776555455


Q ss_pred             HHHH
Q 019978          282 VMGG  285 (333)
Q Consensus       282 ~~~a  285 (333)
                      +.+.
T Consensus       172 ~~a~  175 (298)
T 2pv7_A          172 NMTY  175 (298)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.36  E-value=6.1e-12  Score=118.81  Aligned_cols=157  Identities=15%  Similarity=0.169  Sum_probs=100.5

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .+|||+|||+|.||.++|..|++. |     ++|++|+|++++++++..                               
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~-G-----~~V~~~dr~~~~~~~~~~-------------------------------   50 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQ-G-----KRVAIWNRSPGKAAALVA-------------------------------   50 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHHHH-------------------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHH-------------------------------
Confidence            458999999999999999999999 8     999999999876543210                               


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH--HHHhhhhccCCCCEEEEeee
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE--EISRYWKERITVPVIISLAK  198 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~--~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                              ..+...++++++++++|+||+++|.. .+++++.  .+... .+   +++||.++.
T Consensus        51 ------------------------~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~l~~~-~~---g~ivid~st  102 (306)
T 3l6d_A           51 ------------------------AGAHLCESVKAALSASPATIFVLLDNHATHEVLGMPGVARA-LA---HRTIVDYTT  102 (306)
T ss_dssp             ------------------------HTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHTSTTHHHH-TT---TCEEEECCC
T ss_pred             ------------------------CCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhcccchhhc-cC---CCEEEECCC
Confidence                                    02345578888899999999999976 5888886  66553 44   677877654


Q ss_pred             cCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEec
Q 019978          199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDN  274 (333)
Q Consensus       199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s  274 (333)
                      . .+..     .+.+.+.+.+ .|.......+..+|..+   ..+. ..++++++++..+.++.+|+..+-++.+.
T Consensus       103 ~-~~~~-----~~~l~~~~~~-~g~~~vdapv~g~~~~~---~~~~-~~i~~gg~~~~~~~~~~ll~~lg~~~~~~  167 (306)
T 3l6d_A          103 N-AQDE-----GLALQGLVNQ-AGGHYVKGMIVAYPRNV---GHRE-SHSIHTGDREAFEQHRALLEGLAGHTVFL  167 (306)
T ss_dssp             C-CTTH-----HHHHHHHHHH-TTCEEEEEEEESCGGGT---TCTT-CEEEEEECHHHHHHHHHHHHTTCSEEEEC
T ss_pred             C-CHHH-----HHHHHHHHHH-cCCeEEecccccCcccc---cCCc-eEEEEcCCHHHHHHHHHHHHHhcCCEEEe
Confidence            3 3321     1122222222 22111111233333222   1222 23345667788999999999874466544

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=99.34  E-value=2.9e-12  Score=122.41  Aligned_cols=126  Identities=21%  Similarity=0.295  Sum_probs=88.3

Q ss_pred             CCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhh
Q 019978           39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE  118 (333)
Q Consensus        39 ~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~  118 (333)
                      ++....||+|||+|.||+.+|..++.+ |     ++|++||++++.+++...     .+...   +.++..... ++.  
T Consensus         2 a~p~~~~VaViGaG~MG~giA~~~a~~-G-----~~V~l~D~~~~~l~~~~~-----~i~~~---l~~~~~~g~-~~~--   64 (319)
T 3ado_A            2 ASPAAGDVLIVGSGLVGRSWAMLFASG-G-----FRVKLYDIEPRQITGALE-----NIRKE---MKSLQQSGS-LKG--   64 (319)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSCHHHHHHHHH-----HHHHH---HHHHHHTTC-CCS--
T ss_pred             CCCCCCeEEEECCcHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHH-----HHHHH---HHHHHHcCC-CCC--
Confidence            344567999999999999999999999 8     999999999876654221     11111   111111110 110  


Q ss_pred             hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEe
Q 019978          119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISL  196 (333)
Q Consensus       119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~  196 (333)
                            .+.+++.             +.++..++|+++++++||+||.|||..  ...+++++|.+++++   ++++.|.
T Consensus        65 ------~~~~~~~-------------l~~i~~~~~l~~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~---~aIlaSN  122 (319)
T 3ado_A           65 ------SLSAEEQ-------------LSLISSCTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDD---RVVLSSS  122 (319)
T ss_dssp             ------SSCHHHH-------------HHTEEEECCHHHHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCS---SSEEEEC
T ss_pred             ------ccCHHHH-------------HhhcccccchHhHhccCcEEeeccccHHHHHHHHHHHHHHHhhh---cceeehh
Confidence                  1111111             126888999999999999999999986  689999999999988   8999899


Q ss_pred             eecCccc
Q 019978          197 AKGVEAE  203 (333)
Q Consensus       197 ~kGi~~~  203 (333)
                      |.++...
T Consensus       123 TSsl~is  129 (319)
T 3ado_A          123 SSCLLPS  129 (319)
T ss_dssp             CSSCCHH
T ss_pred             hhhccch
Confidence            9888875

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=99.01  E-value=1.1e-13  Score=123.79  Aligned_cols=161  Identities=13%  Similarity=0.101  Sum_probs=108.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|+||+++|..|.+. |     ++|++|+|+++ .+.+.                         .        
T Consensus        20 ~~I~iIG~G~mG~~la~~L~~~-G-----~~V~~~~r~~~-~~~~~-------------------------~--------   59 (201)
T 2yjz_A           20 GVVCIFGTGDFGKSLGLKMLQC-G-----YSVVFGSRNPQ-VSSLL-------------------------P--------   59 (201)
Confidence            6899999999999999999998 8     89999999875 32110                         0        


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                                            ..+.+. +++++++++|+||++||++.+++++ ++.+.. +   +++||++++|+...
T Consensus        60 ----------------------~g~~~~-~~~~~~~~aDvVilav~~~~~~~v~-~l~~~~-~---~~ivI~~~~G~~~~  111 (201)
T 2yjz_A           60 ----------------------RGAEVL-CYSEAASRSDVIVLAVHREHYDFLA-ELADSL-K---GRVLIDVSNNQKMN  111 (201)
Confidence                                  012223 4556778999999999999888887 565533 3   67899999999632


Q ss_pred             ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhc-cCc----eeEEEeCChhhHHHHHHHhCCCCeEEEecCChh
Q 019978          204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN-KEY----ANARICGAEKWRKPLAKFLRRPHFTVWDNGDLV  278 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~-~~~----~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~Di~  278 (333)
                      ..    ...-.+.+++.++..   ..+...|+++..... +..    +..+.+++++..+.++.+|+..|+++....++-
T Consensus       112 ~~----~~~~~~~l~~~~~~~---~vvra~~n~~a~~~~~g~l~g~~~~~~~g~~~~~~~~v~~ll~~~G~~~~~~G~l~  184 (201)
T 2yjz_A          112 QY----PESNAEYLAQLVPGA---HVVKAFNTISAWALQSGTLDASRQVFVCGNDSKAKDRVMDIARTLGLTPLDQGSLV  184 (201)
Confidence            10    000113455555421   235566777665544 221    122334456678899999999999887766654


Q ss_pred             H
Q 019978          279 T  279 (333)
Q Consensus       279 g  279 (333)
                      .
T Consensus       185 ~  185 (201)
T 2yjz_A          185 A  185 (201)
Confidence            3

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=99.31  E-value=5.8e-13  Score=123.88  Aligned_cols=199  Identities=13%  Similarity=0.047  Sum_probs=107.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeE-EEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      +|||+|||+|.||++++..|+++       ++| .+|+|++++++++.         +             .+       
T Consensus         2 ~m~I~iIG~G~mG~~la~~l~~~-------~~v~~v~~~~~~~~~~~~---------~-------------~~-------   45 (276)
T 2i76_A            2 SLVLNFVGTGTLTRFFLECLKDR-------YEIGYILSRSIDRARNLA---------E-------------VY-------   45 (276)
T ss_dssp             --CCEEESCCHHHHHHHHTTC-----------CCCEECSSHHHHHHHH---------H-------------HT-------
T ss_pred             CceEEEEeCCHHHHHHHHHHHHc-------CcEEEEEeCCHHHHHHHH---------H-------------Hc-------
Confidence            37999999999999999998765       578 59999986554321         0             00       


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                               .. .+++++++++++|+||+|||++.+.++++++.   .+   +++|++++.++.
T Consensus        46 -------------------------g~-~~~~~~~~~~~~DvVilav~~~~~~~v~~~l~---~~---~~ivi~~s~~~~   93 (276)
T 2i76_A           46 -------------------------GG-KAATLEKHPELNGVVFVIVPDRYIKTVANHLN---LG---DAVLVHCSGFLS   93 (276)
T ss_dssp             -------------------------CC-CCCSSCCCCC---CEEECSCTTTHHHHHTTTC---CS---SCCEEECCSSSC
T ss_pred             -------------------------CC-ccCCHHHHHhcCCEEEEeCChHHHHHHHHHhc---cC---CCEEEECCCCCc
Confidence                                     11 23445556778999999999999999998875   33   678888876665


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEE-ecC-ChhH
Q 019978          202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW-DNG-DLVT  279 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~-~s~-Di~g  279 (333)
                      .+.            +++.+....++...++||....+...+.+.  .++.+++..+.++.+|+..+.+++ ..+ |...
T Consensus        94 ~~~------------l~~~~~~~~~p~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~lG~~~~~v~~~~~~~  159 (276)
T 2i76_A           94 SEI------------FKKSGRASIHPNFSFSSLEKALEMKDQIVF--GLEGDERGLPIVKKIAEEISGKYFVIPSEKKKA  159 (276)
T ss_dssp             GGG------------GCSSSEEEEEECSCC--CTTGGGCGGGCCE--EECCCTTTHHHHHHHHHHHCSCEEECCGGGHHH
T ss_pred             HHH------------HHHhhccccchhhhcCCCchhHHHhCCCeE--EEEeChHHHHHHHHHHHHhCCCEEEECHHHHHH
Confidence            431            222111001122223453333332233222  334455567777778777664443 332 3111


Q ss_pred             -----HHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCC
Q 019978          280 -----HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMG  326 (333)
Q Consensus       280 -----ve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G  326 (333)
                           .-.+..+.++++.+..++...+.. .  ..+++...+.+.... ...|
T Consensus       160 ~~~~~~l~~n~~~~~~~~a~~~~~~~Gl~-~--~~a~~~~l~~~~~~~~~~~g  209 (276)
T 2i76_A          160 YHLAAVIASNFPVALAYLSKRIYTLLGLD-E--PELLIHTLMKGVADNIKKMR  209 (276)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHTTTCS-C--HHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCC-h--HHHHHHHHHHHHHHHHHhcC
Confidence                 223334566777776666655542 2  222355555555554 4554

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.29  E-value=2.8e-11  Score=116.11  Aligned_cols=180  Identities=17%  Similarity=0.181  Sum_probs=117.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|.||+++|..|.+. |     ++|++|+|+++...+.        ..+                        
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~-G-----~~V~~~~~~~~~~~~~--------a~~------------------------   58 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDS-G-----VDVTVGLRSGSATVAK--------AEA------------------------   58 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECCTTCHHHHH--------HHH------------------------
T ss_pred             CEEEEECchHHHHHHHHHHHHC-c-----CEEEEEECChHHHHHH--------HHH------------------------
Confidence            6999999999999999999998 8     8999999987542100        000                        


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHH-HHHhhhhccCCCCEEEEeeecCcc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~-~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                                            ..+.++ ++++++.++|+||+|||++...++++ ++.+++++   +++|+++ +|+..
T Consensus        59 ----------------------~G~~~~-~~~e~~~~aDvVilavp~~~~~~v~~~~i~~~l~~---~~ivi~~-~gv~~  111 (338)
T 1np3_A           59 ----------------------HGLKVA-DVKTAVAAADVVMILTPDEFQGRLYKEEIEPNLKK---GATLAFA-HGFSI  111 (338)
T ss_dssp             ----------------------TTCEEE-CHHHHHHTCSEEEECSCHHHHHHHHHHHTGGGCCT---TCEEEES-CCHHH
T ss_pred             ----------------------CCCEEc-cHHHHHhcCCEEEEeCCcHHHHHHHHHHHHhhCCC---CCEEEEc-CCchh
Confidence                                  023344 77788899999999999999999998 99988876   6777754 56543


Q ss_pred             cccCCccCCCHHHHHHhHhCCCCCcEE--EEcCCCchH-HHhc---cCceeEEEe--CChhhHHHHHHHhCCCCe-E--E
Q 019978          203 ELEAVPRIITPTQMINRATGVPIENIL--YLGGPNIAS-EIYN---KEYANARIC--GAEKWRKPLAKFLRRPHF-T--V  271 (333)
Q Consensus       203 ~~~~~~~~~~~se~i~~~lg~~~~~~~--vl~GP~~a~-ev~~---~~~~~~~~~--~~~~~~~~l~~ll~~~~~-~--v  271 (333)
                       .            +.+........+.  .-.||.++. +...   +.++.++..  .+.+..+.+..++...|. +  +
T Consensus       112 -~------------~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~a~~~~~~l~~~lG~~~agv  178 (338)
T 1np3_A          112 -H------------YNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVALSYACGVGGGRTGI  178 (338)
T ss_dssp             -H------------TTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHHHHHHHHHHTTHHHHCE
T ss_pred             -H------------HHhhcCCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCCCCHHHHHHHHHHHHHcCCCccce
Confidence             1            1221111111111  115677653 3443   666654442  344567778888877776 3  3


Q ss_pred             Eec-------CChhHH--HHHHHHHHHHHHHHHHHhccC
Q 019978          272 WDN-------GDLVTH--EVMGGLKNVYAIGAGMVAALT  301 (333)
Q Consensus       272 ~~s-------~Di~gv--e~~~alkNv~Ai~~Gi~~gl~  301 (333)
                      ...       .|..+.  -+||.+.++++.+...+...+
T Consensus       179 ~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~G  217 (338)
T 1np3_A          179 IETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAG  217 (338)
T ss_dssp             EECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT
T ss_pred             EeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcC
Confidence            322       234553  388889999888764444333

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.28  E-value=5.2e-11  Score=118.92  Aligned_cols=177  Identities=11%  Similarity=0.051  Sum_probs=111.3

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .++||+|||+|.||+.||..|+++ |     ++|++|++++++....-.+.+....+.           . .+....   
T Consensus        53 ~i~kVaVIGaG~MG~~IA~~la~a-G-----~~V~l~D~~~e~a~~~i~~~l~~~~~~-----------G-~l~~~~---  111 (460)
T 3k6j_A           53 DVNSVAIIGGGTMGKAMAICFGLA-G-----IETFLVVRNEQRCKQELEVMYAREKSF-----------K-RLNDKR---  111 (460)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHHHHHHHHHT-----------T-SCCHHH---
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEECcHHHHHHHHHHHHHHHHHc-----------C-CCCHHH---
Confidence            458999999999999999999999 8     999999999873211000011101110           0 111000   


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                            .++             .+.++.+++|++ ++.+||+||+|||++  ..+++++++.+++++   ++++++.+++
T Consensus       112 ------~~~-------------~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~---~aIlasnTSs  168 (460)
T 3k6j_A          112 ------IEK-------------INANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKS---TCIFGTNTSS  168 (460)
T ss_dssp             ------HHH-------------HHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCT---TCEEEECCSS
T ss_pred             ------HHH-------------HhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCC---CCEEEecCCC
Confidence                  000             012688889985 689999999999975  578899999999987   7888888877


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-e--CChhhHHHHHHHhCCCCeEEEecCC
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-C--GAEKWRKPLAKFLRRPHFTVWDNGD  276 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~--~~~~~~~~l~~ll~~~~~~v~~s~D  276 (333)
                      +...            .+.+.+..+ ..+. -..|-.+..   ..+...++ .  .+++.++.+..++...+-.+....|
T Consensus       169 l~i~------------~ia~~~~~p-~r~i-G~HffnPv~---~m~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d  231 (460)
T 3k6j_A          169 LDLN------------EISSVLRDP-SNLV-GIHFFNPAN---VIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGN  231 (460)
T ss_dssp             SCHH------------HHHTTSSSG-GGEE-EEECCSSTT---TCCEEEEECCSSCCHHHHHHHHHHHHHTTCEEEEESS
T ss_pred             hhHH------------HHHHhccCC-cceE-EEEecchhh---hCCEEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEEec
Confidence            6653            245545432 1221 111211211   11222233 2  2567888999999888877776677


Q ss_pred             hhH
Q 019978          277 LVT  279 (333)
Q Consensus       277 i~g  279 (333)
                      .-|
T Consensus       232 ~pG  234 (460)
T 3k6j_A          232 CKS  234 (460)
T ss_dssp             CCH
T ss_pred             ccH
Confidence            655

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.22  E-value=7.8e-11  Score=118.41  Aligned_cols=179  Identities=16%  Similarity=0.168  Sum_probs=111.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      ++||+|||+|.||++||..|+++ |     ++|++|+++++.+++....     +...   +.++..... +...     
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~a-G-----~~V~l~D~~~e~l~~~~~~-----i~~~---l~~~~~~g~-~~~~-----   64 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASH-G-----HQVLLYDISAEALTRAIDG-----IHAR---LNSRVTRGK-LTAE-----   64 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSCHHHHHHHHHH-----HHHH---HHTTTTTTS-SCHH-----
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHHHHHH-----HHHH---HHHHHHcCC-CCHH-----
Confidence            57999999999999999999999 8     9999999999877653321     1110   010000000 0000     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                        .  .+++             +.++.+++|++ ++.+||+||+|||++  ..+++++++.+++++   ++++++.++++
T Consensus        65 --~--~~~~-------------~~~i~~~~~~~-~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~---~~IlasntSti  123 (483)
T 3mog_A           65 --T--CERT-------------LKRLIPVTDIH-ALAAADLVIEAASERLEVKKALFAQLAEVCPP---QTLLTTNTSSI  123 (483)
T ss_dssp             --H--HHHH-------------HHTEEEECCGG-GGGGCSEEEECCCCCHHHHHHHHHHHHHHSCT---TCEEEECCSSS
T ss_pred             --H--HHHH-------------HhceeEeCCHH-HhcCCCEEEEcCCCcHHHHHHHHHHHHHhhcc---CcEEEecCCCC
Confidence              0  0000             12678888885 688999999999987  568999999999887   78887888887


Q ss_pred             cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeC---ChhhHHHHHHHhCCCCeEEEecCCh
Q 019978          201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG---AEKWRKPLAKFLRRPHFTVWDNGDL  277 (333)
Q Consensus       201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~---~~~~~~~l~~ll~~~~~~v~~s~Di  277 (333)
                      ...            .+.+.+..+ ..+ +-..|..+..+.   +...++.+   +++..+.+..++...+-.+....|.
T Consensus       124 ~i~------------~ia~~~~~p-~~~-ig~hf~~Pa~v~---~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~  186 (483)
T 3mog_A          124 SIT------------AIAAEIKNP-ERV-AGLHFFNPAPVM---KLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHST  186 (483)
T ss_dssp             CHH------------HHTTTSSSG-GGE-EEEEECSSTTTC---CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CHH------------HHHHHccCc-cce-EEeeecChhhhC---CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEEecc
Confidence            754            244444322 111 111222222222   11123332   5677888888888877666555565


Q ss_pred             hH
Q 019978          278 VT  279 (333)
Q Consensus       278 ~g  279 (333)
                      -|
T Consensus       187 ~G  188 (483)
T 3mog_A          187 PG  188 (483)
T ss_dssp             TT
T ss_pred             Cc
Confidence            44

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.16  E-value=5.8e-10  Score=117.17  Aligned_cols=179  Identities=13%  Similarity=0.132  Sum_probs=110.1

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .++||+|||+|.||+.||..|+++ |     ++|++|+++++.+++....     +...   ++++.... .+...    
T Consensus       311 ~~~kV~VIGaG~MG~~iA~~la~a-G-----~~V~l~D~~~~~~~~~~~~-----i~~~---l~~~~~~G-~~~~~----  371 (725)
T 2wtb_A          311 KIKKVAIIGGGLMGSGIATALILS-N-----YPVILKEVNEKFLEAGIGR-----VKAN---LQSRVRKG-SMSQE----  371 (725)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSSHHHHHHHHHH-----HHHH---HHHTTC-----CTT----
T ss_pred             cCcEEEEEcCCHhhHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHHH-----HHHH---HHHHHhcC-CCCHH----
Confidence            357899999999999999999999 8     9999999999876543211     1110   01000000 01000    


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~--~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                         .  .             +..+.+++.++|+ +++.+||+||+|||.+.  .+++++++.+++++   ++++++.+++
T Consensus       372 ---~--~-------------~~~~~~i~~~~d~-~~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~---~~IlasntSt  429 (725)
T 2wtb_A          372 ---K--F-------------EKTMSLLKGSLDY-ESFRDVDMVIEAVIENISLKQQIFADLEKYCPQ---HCILASNTST  429 (725)
T ss_dssp             ---H--H-------------HHTTTSEEEESSS-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCT---TCEEEECCSS
T ss_pred             ---H--H-------------HHHhcceEEeCCH-HHHCCCCEEEEcCcCCHHHHHHHHHHHHhhCCC---CcEEEeCCCC
Confidence               0  0             0011368888888 57899999999999875  78899999998887   7888787877


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEE-EEcCCCchHHHhccCceeEEEeC---ChhhHHHHHHHhCCCCeEEEecC
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENIL-YLGGPNIASEIYNKEYANARICG---AEKWRKPLAKFLRRPHFTVWDNG  275 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~-vl~GP~~a~ev~~~~~~~~~~~~---~~~~~~~l~~ll~~~~~~v~~s~  275 (333)
                      ++..           + +.+.+..+...+. -..-|..      ..+...++.+   +++..+.+..++...+..+....
T Consensus       430 l~i~-----------~-la~~~~~p~~~iG~hf~~P~~------~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~  491 (725)
T 2wtb_A          430 IDLN-----------K-IGERTKSQDRIVGAHFFSPAH------IMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVG  491 (725)
T ss_dssp             SCHH-----------H-HTTTCSCTTTEEEEEECSSTT------TCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCHH-----------H-HHHHhcCCCCEEEecCCCCcc------cCceEEEEECCCCCHHHHHHHHHHHHHhCCEEEEEC
Confidence            7653           2 4443432211111 1122322      1222223332   56778888888887776665555


Q ss_pred             ChhH
Q 019978          276 DLVT  279 (333)
Q Consensus       276 Di~g  279 (333)
                      |..|
T Consensus       492 d~~G  495 (725)
T 2wtb_A          492 NCTG  495 (725)
T ss_dssp             SSTT
T ss_pred             CCcc
Confidence            6444

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.14  E-value=7e-10  Score=110.78  Aligned_cols=118  Identities=15%  Similarity=0.176  Sum_probs=80.3

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .++||+|||+|.||+.||..|+++ |     ++|++|+++++.+++....     +...   +.+      ++..  +.+
T Consensus        36 ~~~kV~VIGaG~MG~~iA~~la~~-G-----~~V~l~D~~~~~~~~~~~~-----i~~~---l~~------~~~~--g~~   93 (463)
T 1zcj_A           36 PVSSVGVLGLGTMGRGIAISFARV-G-----ISVVAVESDPKQLDAAKKI-----ITFT---LEK------EASR--AHQ   93 (463)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSHHHHHHHHHH-----HHHH---HHH------HHHH--HHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHHH-----HHHH---HHH------HHHc--CCC
Confidence            468999999999999999999999 8     9999999998876543321     1100   000      0000  000


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                      .....               +  ....++++++ +++.+||+||+|||++  ...++++++.+++++   +++|++.+++
T Consensus        94 ~~~~~---------------~--~~~~~i~~~~-~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~---~~ii~snTs~  152 (463)
T 1zcj_A           94 NGQAS---------------A--KPKLRFSSST-KELSTVDLVVEAVFEDMNLKKKVFAELSALCKP---GAFLCTNTSA  152 (463)
T ss_dssp             TTCCC---------------C--CCCEEEESCG-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCT---TCEEEECCSS
T ss_pred             CHHHH---------------H--HHHhhhcCCH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCC---CeEEEeCCCC
Confidence            00000               0  0124457777 4688999999999986  468899999998887   7888887777


Q ss_pred             Ccc
Q 019978          200 VEA  202 (333)
Q Consensus       200 i~~  202 (333)
                      +..
T Consensus       153 ~~~  155 (463)
T 1zcj_A          153 LNV  155 (463)
T ss_dssp             SCH
T ss_pred             cCH
Confidence            654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.14  E-value=4.2e-10  Score=106.23  Aligned_cols=157  Identities=17%  Similarity=0.148  Sum_probs=101.7

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      +-+||+|||+|.||+.||..|+ + |     ++|++|+++++.+++....                      +..     
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-a-G-----~~V~v~d~~~~~~~~~~~~----------------------l~~-----   56 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-S-K-----HEVVLQDVSEKALEAAREQ----------------------IPE-----   56 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-T-T-----SEEEEECSCHHHHHHHHHH----------------------SCG-----
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-c-C-----CEEEEEECCHHHHHHHHHH----------------------HHH-----
Confidence            4589999999999999999999 9 8     9999999998766532110                      100     


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~--~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                           ..+.++++++++++ +.+||+||.|+|...  ...++.++.++  +   ++++++.+.+
T Consensus        57 ---------------------~~~~~i~~~~~~~~-~~~aDlVieavpe~~~vk~~l~~~l~~~--~---~~IlasntSt  109 (293)
T 1zej_A           57 ---------------------ELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNTKVEVLREVERL--T---NAPLCSNTSV  109 (293)
T ss_dssp             ---------------------GGGGGEEEESSCTT-GGGCSEEEECCCSCHHHHHHHHHHHHTT--C---CSCEEECCSS
T ss_pred             ---------------------HHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHHHHHHHHHHhcC--C---CCEEEEECCC
Confidence                                 00125777788875 889999999999875  67777888776  5   6777776666


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEE-EEcCCCchHHHhccCceeEEE-e--CChhhHHHHHHHhCCCCeEEEecC
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENIL-YLGGPNIASEIYNKEYANARI-C--GAEKWRKPLAKFLRRPHFTVWDNG  275 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~-vl~GP~~a~ev~~~~~~~~~~-~--~~~~~~~~l~~ll~~~~~~v~~s~  275 (333)
                      +.+.            .+.+.+..+..... -..-|..      ..+...++ +  .+++..+.+..++...+-++....
T Consensus       110 i~~~------------~~a~~~~~~~r~~G~Hf~~Pv~------~~~lveiv~g~~t~~~~~~~~~~l~~~lGk~~v~v~  171 (293)
T 1zej_A          110 ISVD------------DIAERLDSPSRFLGVHWMNPPH------VMPLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCK  171 (293)
T ss_dssp             SCHH------------HHHTTSSCGGGEEEEEECSSTT------TCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCHH------------HHHHHhhcccceEeEEecCccc------cCCEEEEECCCCCCHHHHHHHHHHHHHcCCeEEEec
Confidence            6553            23443332211111 1112432      22332233 3  367788999999988776655444


Q ss_pred             Ch
Q 019978          276 DL  277 (333)
Q Consensus       276 Di  277 (333)
                      |.
T Consensus       172 d~  173 (293)
T 1zej_A          172 GQ  173 (293)
T ss_dssp             SS
T ss_pred             cc
Confidence            54

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.14  E-value=2.1e-10  Score=120.40  Aligned_cols=179  Identities=13%  Similarity=0.114  Sum_probs=109.8

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ..++||+|||+|.||+.||..|+++ |     ++|++|+++++.+++... .    +...   ++++.... .+....  
T Consensus       312 ~~i~kV~VIGaG~MG~~iA~~la~a-G-----~~V~l~D~~~~~~~~~~~-~----i~~~---l~~~~~~G-~~~~~~--  374 (715)
T 1wdk_A          312 KDVKQAAVLGAGIMGGGIAYQSASK-G-----TPILMKDINEHGIEQGLA-E----AAKL---LVGRVDKG-RMTPAK--  374 (715)
T ss_dssp             CCCSSEEEECCHHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHHHH-H----HHHH---HHHHHTTT-SSCHHH--
T ss_pred             ccCCEEEEECCChhhHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHH-H----HHHH---HHHHHhcC-CCCHHH--
Confidence            4578999999999999999999999 8     999999999987654211 0    1110   11100000 010000  


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~--~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                             .+++             +.++++++|+ +++.+||+||+|||.+.  .+++++++.+++++   ++++++.++
T Consensus       375 -------~~~~-------------~~~i~~~~d~-~~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~---~~IlasntS  430 (715)
T 1wdk_A          375 -------MAEV-------------LNGIRPTLSY-GDFGNVDLVVEAVVENPKVKQAVLAEVENHVRE---DAILASNTS  430 (715)
T ss_dssp             -------HHHH-------------HHHEEEESSS-TTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCT---TCEEEECCS
T ss_pred             -------HHHH-------------hcCeEEECCH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCC---CeEEEeCCC
Confidence                   0000             0147778888 67899999999999764  78899999998887   788888887


Q ss_pred             cCcccccCCccCCCHHHHHHhHhCCCCCcEEE--EcCCCchHHHhccCceeEEE-e--CChhhHHHHHHHhCCCCeEEEe
Q 019978          199 GVEAELEAVPRIITPTQMINRATGVPIENILY--LGGPNIASEIYNKEYANARI-C--GAEKWRKPLAKFLRRPHFTVWD  273 (333)
Q Consensus       199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~~~v--l~GP~~a~ev~~~~~~~~~~-~--~~~~~~~~l~~ll~~~~~~v~~  273 (333)
                      +++..           + +.+.+..+ ..+.-  ..-|..      ..+...++ +  .+++..+.+..++...+..+..
T Consensus       431 tl~i~-----------~-la~~~~~~-~~~ig~hf~~P~~------~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~  491 (715)
T 1wdk_A          431 TISIS-----------L-LAKALKRP-ENFVGMHFFNPVH------MMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIV  491 (715)
T ss_dssp             SSCHH-----------H-HGGGCSCG-GGEEEEECCSSTT------TCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCHH-----------H-HHHHhcCc-cceEEEEccCCcc------cCceEEEEECCCCCHHHHHHHHHHHHHhCCEeEE
Confidence            77653           2 44444322 11111  111321      11222223 2  2567788888888877766655


Q ss_pred             cCChhH
Q 019978          274 NGDLVT  279 (333)
Q Consensus       274 s~Di~g  279 (333)
                      ..|.-|
T Consensus       492 v~d~~G  497 (715)
T 1wdk_A          492 VNDCPG  497 (715)
T ss_dssp             EESCTT
T ss_pred             EcCCCC
Confidence            556444

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.09  E-value=4.6e-10  Score=108.13  Aligned_cols=158  Identities=9%  Similarity=0.068  Sum_probs=98.6

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .++||+|||+|.||++||..|.+. |     ++|++|+|+++.++.+.         +                      
T Consensus         7 ~~~kIgIIG~G~mG~slA~~L~~~-G-----~~V~~~dr~~~~~~~a~---------~----------------------   49 (341)
T 3ktd_A            7 ISRPVCILGLGLIGGSLLRDLHAA-N-----HSVFGYNRSRSGAKSAV---------D----------------------   49 (341)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSCHHHHHHHH---------H----------------------
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHH---------H----------------------
Confidence            357999999999999999999999 8     89999999986543211         0                      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc----CCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEee
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW----DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA  197 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~----~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~  197 (333)
                                              ..+..++++++++.    ++|+||+|||...+.++++++.++ ++   +++|+.++
T Consensus        50 ------------------------~G~~~~~~~~e~~~~a~~~aDlVilavP~~~~~~vl~~l~~~-~~---~~iv~Dv~  101 (341)
T 3ktd_A           50 ------------------------EGFDVSADLEATLQRAAAEDALIVLAVPMTAIDSLLDAVHTH-AP---NNGFTDVV  101 (341)
T ss_dssp             ------------------------TTCCEESCHHHHHHHHHHTTCEEEECSCHHHHHHHHHHHHHH-CT---TCCEEECC
T ss_pred             ------------------------cCCeeeCCHHHHHHhcccCCCEEEEeCCHHHHHHHHHHHHcc-CC---CCEEEEcC
Confidence                                    01234466666554    479999999999999999999886 55   66665543


Q ss_pred             ecCcccccCCccCCCHHHHHHhHhCC----CCCcEE--EEcCCCchH-HHhccCceeEEEe--CChh--------hHHHH
Q 019978          198 KGVEAELEAVPRIITPTQMINRATGV----PIENIL--YLGGPNIAS-EIYNKEYANARIC--GAEK--------WRKPL  260 (333)
Q Consensus       198 kGi~~~~~~~~~~~~~se~i~~~lg~----~~~~~~--vl~GP~~a~-ev~~~~~~~~~~~--~~~~--------~~~~l  260 (333)
                       ++...         +.+.+.+.++.    +.+|+.  ..+||..+. ++..+.++.++..  .+++        ..+.+
T Consensus       102 -Svk~~---------i~~~~~~~~~~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~v  171 (341)
T 3ktd_A          102 -SVKTA---------VYDAVKARNMQHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDGTDINSTWISIWKDV  171 (341)
T ss_dssp             -SCSHH---------HHHHHHHTTCGGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSSCCCCHHHHHHHHHH
T ss_pred             -CCChH---------HHHHHHHhCCCCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCCChhhhccchHHHHHHH
Confidence             22211         11223333320    011111  012332222 2334444433322  2345        78899


Q ss_pred             HHHhCCCCeEEEec
Q 019978          261 AKFLRRPHFTVWDN  274 (333)
Q Consensus       261 ~~ll~~~~~~v~~s  274 (333)
                      +++|+..|.++...
T Consensus       172 ~~l~~~~Ga~v~~~  185 (341)
T 3ktd_A          172 VQMALAVGAEVVPS  185 (341)
T ss_dssp             HHHHHHTTCEEEEC
T ss_pred             HHHHHHcCCEEEEe
Confidence            99999988766644

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.05  E-value=3.5e-09  Score=105.92  Aligned_cols=153  Identities=14%  Similarity=0.108  Sum_probs=101.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHh-----cCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDS-----YGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE  118 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~-----~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~  118 (333)
                      +||+|||+|+||.++|..|.+.     .|     ++|+++.++.+...+..        .+                   
T Consensus        55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G-----~~ViVg~r~~sks~e~A--------~e-------------------  102 (525)
T 3fr7_A           55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSD-----IVVKIGLRKGSKSFDEA--------RA-------------------  102 (525)
T ss_dssp             SEEEEECCTTHHHHHHHHHHHHHHHTTCC-----CEEEEEECTTCSCHHHH--------HH-------------------
T ss_pred             CEEEEEeEhHHHHHHHHHHHhcccccCCC-----CEEEEEeCCchhhHHHH--------HH-------------------
Confidence            6999999999999999999875     14     78887777643221100        00                   


Q ss_pred             hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                     .|+..        .-....++.+++++||+||+++|.....++++++.+.+++   +++ |+++.
T Consensus       103 ---------------~G~~v--------~d~ta~s~aEAa~~ADVVILaVP~~~~~eVl~eI~p~LK~---GaI-Ls~Aa  155 (525)
T 3fr7_A          103 ---------------AGFTE--------ESGTLGDIWETVSGSDLVLLLISDAAQADNYEKIFSHMKP---NSI-LGLSH  155 (525)
T ss_dssp             ---------------TTCCT--------TTTCEEEHHHHHHHCSEEEECSCHHHHHHHHHHHHHHSCT---TCE-EEESS
T ss_pred             ---------------CCCEE--------ecCCCCCHHHHHhcCCEEEECCChHHHHHHHHHHHHhcCC---CCe-EEEeC
Confidence                           01100        0001246778899999999999999988999999999987   665 78888


Q ss_pred             cCcccccCCccCCCHHHHHHh---HhCCCCCcEEEEcCCCchHHH-------h-----ccCceeEEEeC--ChhhHHHHH
Q 019978          199 GVEAELEAVPRIITPTQMINR---ATGVPIENILYLGGPNIASEI-------Y-----NKEYANARICG--AEKWRKPLA  261 (333)
Q Consensus       199 Gi~~~~~~~~~~~~~se~i~~---~lg~~~~~~~vl~GP~~a~ev-------~-----~~~~~~~~~~~--~~~~~~~l~  261 (333)
                      |+...            ++++   .++.  ..-+++.+|+.+..+       +     .|.++.+.+..  +.+..+.+.
T Consensus       156 Gf~I~------------~le~~~i~~p~--dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~liAv~qd~tgea~e~al  221 (525)
T 3fr7_A          156 GFLLG------------HLQSAGLDFPK--NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVAL  221 (525)
T ss_dssp             SHHHH------------HHHHTTCCCCT--TSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEEEEEECSSSCHHHHHH
T ss_pred             CCCHH------------HHhhhcccCCC--CCcEEEEecCCCchhHHHHHhcccccccCCccEEEEcCCCCCHHHHHHHH
Confidence            98763            2443   2332  224577889888765       3     45665544422  235666777


Q ss_pred             HHhCCCCe
Q 019978          262 KFLRRPHF  269 (333)
Q Consensus       262 ~ll~~~~~  269 (333)
                      .+|...|.
T Consensus       222 ala~aiG~  229 (525)
T 3fr7_A          222 GWSVALGS  229 (525)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHCCC
Confidence            77776654

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=98.96  E-value=1.1e-09  Score=103.22  Aligned_cols=107  Identities=17%  Similarity=0.286  Sum_probs=74.0

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCe--eEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~--~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      .+|||+|||+|+||+++|..|+.+ |     +  +|++|++++++++..       .++..+        ...+...   
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~-g-----~~~~V~l~d~~~~~~~~~-------~~~~~~--------~~~~~~~---   61 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQR-G-----IAREIVLEDIAKERVEAE-------VLDMQH--------GSSFYPT---   61 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT-T-----CCSEEEEECSSHHHHHHH-------HHHHHH--------TGGGSTT---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-C-----CCCEEEEEeCChhHHHHH-------HHHHHh--------hhhhcCC---
Confidence            358999999999999999999998 8     7  999999997654310       011000        0000000   


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh----------------HHHHHHHHHhh
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE----------------TKEVFEEISRY  183 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~----------------~~~vl~~i~~~  183 (333)
                                                ..+..+++. ++++++|+||++++...                +.++++++.++
T Consensus        62 --------------------------~~v~~~~~~-~~~~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~  114 (319)
T 1lld_A           62 --------------------------VSIDGSDDP-EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV  114 (319)
T ss_dssp             --------------------------CEEEEESCG-GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------eEEEeCCCH-HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence                                      135555565 46889999999996543                33788888875


Q ss_pred             hhccCCCCEEEEeeecCccc
Q 019978          184 WKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       184 l~~~~~~~~Ivs~~kGi~~~  203 (333)
                       .+   ++.|++++||+...
T Consensus       115 -~~---~~~vi~~~Np~~~~  130 (319)
T 1lld_A          115 -AP---NAIYMLITNPVDIA  130 (319)
T ss_dssp             -CT---TSEEEECCSSHHHH
T ss_pred             -CC---CceEEEecCchHHH
Confidence             44   68899999998864

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=98.95  E-value=5.4e-09  Score=99.09  Aligned_cols=107  Identities=10%  Similarity=0.159  Sum_probs=76.6

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .+|||+|||+|+||+++|..|+.+ |     + +|++|+++++.++....       .-.+       ... +..     
T Consensus         3 ~~~kI~VIGaG~~G~~ia~~la~~-g-----~~~V~l~D~~~~~~~~~~~-------~l~~-------~~~-~~~-----   56 (317)
T 2ewd_A            3 ERRKIAVIGSGQIGGNIAYIVGKD-N-----LADVVLFDIAEGIPQGKAL-------DITH-------SMV-MFG-----   56 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHH-T-----CCEEEEECSSSSHHHHHHH-------HHHH-------HHH-HHT-----
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-C-----CceEEEEeCCchHHHHHHH-------HHHh-------hhh-hcC-----
Confidence            357999999999999999999999 8     7 99999999876543110       0000       000 000     


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--------------Cc--hhHHHHHHHHHhhh
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--------------PS--TETKEVFEEISRYW  184 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaV--------------ps--~~~~~vl~~i~~~l  184 (333)
                           .                  ..++..++|. +++++||+||+++              +.  ..++++++++.++.
T Consensus        57 -----~------------------~~~i~~t~d~-~a~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~  112 (317)
T 2ewd_A           57 -----S------------------TSKVIGTDDY-ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC  112 (317)
T ss_dssp             -----C------------------CCCEEEESCG-GGGTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             -----C------------------CcEEEECCCH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC
Confidence                 0                  0257777888 6789999999999              32  35788999998875


Q ss_pred             hccCCCCEEEEeeecCcc
Q 019978          185 KERITVPVIISLAKGVEA  202 (333)
Q Consensus       185 ~~~~~~~~Ivs~~kGi~~  202 (333)
                      +    +++++.++|....
T Consensus       113 ~----~~iii~~sNp~~~  126 (317)
T 2ewd_A          113 P----NAFVICITNPLDV  126 (317)
T ss_dssp             T----TSEEEECCSSHHH
T ss_pred             C----CcEEEEeCChHHH
Confidence            4    5788888886543

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=98.94  E-value=5e-09  Score=100.29  Aligned_cols=106  Identities=12%  Similarity=0.175  Sum_probs=75.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      +|||+|||+|.||+++|..|+.+ |     + +|.+|++++++++...       ..-     ++  .+ .++.      
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~-g-----~~~V~L~D~~~~~~~~~~-------~~l-----~~--~~-~~~~------   61 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALR-E-----LADVVLYDVVKGMPEGKA-------LDL-----SH--VT-SVVD------   61 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-T-----CCEEEEECSSSSHHHHHH-------HHH-----HH--HH-HHTT------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEECChhHHHHHH-------HHH-----Hh--hh-hccC------
Confidence            47999999999999999999999 8     7 8999999998665311       000     00  00 0110      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cch-------------------hHHHHHHHH
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PST-------------------ETKEVFEEI  180 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaV--ps~-------------------~~~~vl~~i  180 (333)
                          .                  ..+++.++|+++++++||+||+++  |..                   .+.++++++
T Consensus        62 ----~------------------~~~i~~t~d~~ea~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i  119 (331)
T 1pzg_A           62 ----T------------------NVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNI  119 (331)
T ss_dssp             ----C------------------CCCEEEECSHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHH
T ss_pred             ----C------------------CCEEEEeCCHHHHhCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence                0                  026888899988899999999998  532                   277888888


Q ss_pred             HhhhhccCCCCEEEEeeecCc
Q 019978          181 SRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       181 ~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                      .++. +   +..++..+|-..
T Consensus       120 ~~~~-p---~a~vi~~tNP~~  136 (331)
T 1pzg_A          120 KKYC-P---KTFIIVVTNPLD  136 (331)
T ss_dssp             HHHC-T---TCEEEECCSSHH
T ss_pred             HHHC-C---CcEEEEEcCchH
Confidence            8876 3   567766665443

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=98.90  E-value=5.6e-09  Score=98.51  Aligned_cols=106  Identities=18%  Similarity=0.183  Sum_probs=74.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      ||||+|||+|+||+++|..|+.+ |.  . ++|++|++++++++.+..+     +...         . .++.       
T Consensus         1 m~kI~VIGaG~~G~~la~~L~~~-g~--~-~~V~l~d~~~~~~~~~~~~-----l~~~---------~-~~~~-------   54 (309)
T 1hyh_A            1 ARKIGIIGLGNVGAAVAHGLIAQ-GV--A-DDYVFIDANEAKVKADQID-----FQDA---------M-ANLE-------   54 (309)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH-TC--C-SEEEEECSSHHHHHHHHHH-----HHHH---------G-GGSS-------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CC--C-CEEEEEcCCHHHHHHHHHH-----HHhh---------h-hhcC-------
Confidence            47999999999999999999998 72  1 5899999998765432210     0000         0 0000       


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEE-ecCHHHHhcCCCEEEEecCchh--------------------HHHHHHHHH
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKV-VTNLQEAVWDADIVINGLPSTE--------------------TKEVFEEIS  181 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~-t~d~~ea~~~aDlIIlaVps~~--------------------~~~vl~~i~  181 (333)
                                             ..+.+ ++|+ ++++++|+||+++|+..                    +.++++++.
T Consensus        55 -----------------------~~~~~~~~d~-~~~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~  110 (309)
T 1hyh_A           55 -----------------------AHGNIVINDW-AALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLK  110 (309)
T ss_dssp             -----------------------SCCEEEESCG-GGGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHH
T ss_pred             -----------------------CCeEEEeCCH-HHhCCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                                   02333 4677 67899999999999865                    478888887


Q ss_pred             hhhhccCCCCEEEEeeecCcc
Q 019978          182 RYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       182 ~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                      ++.+    ++.++.++|++..
T Consensus       111 ~~~~----~~~ii~~tNp~~~  127 (309)
T 1hyh_A          111 ESGF----HGVLVVISNPVDV  127 (309)
T ss_dssp             HTTC----CSEEEECSSSHHH
T ss_pred             HHCC----CcEEEEEcCcHHH
Confidence            7653    5677778988764

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=98.85  E-value=1.7e-08  Score=96.50  Aligned_cols=103  Identities=17%  Similarity=0.232  Sum_probs=72.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      |||+|||+|.||+++|..|+.+ |     + +|.+||+++++++.... .    +...         +. ++.       
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~-g-----~~~V~L~Di~~~~l~~~~~-~----l~~~---------~~-~~~-------   66 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQK-D-----LGDVYMFDIIEGVPQGKAL-D----LNHC---------MA-LIG-------   66 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECSSTTHHHHHHH-H----HHHH---------HH-HHT-------
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEECCHHHHHHHHH-H----HHhH---------hh-ccC-------
Confidence            6999999999999999999999 8     7 89999999876653110 0    0000         00 000       


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--------------hhHHHHHHHHHhhhhc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWKE  186 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaV--ps--------------~~~~~vl~~i~~~l~~  186 (333)
                         .                  ..+++.++|. +++++||+||+++  |.              ..+.++++++.++. +
T Consensus        67 ---~------------------~~~i~~t~d~-~al~~aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p  123 (328)
T 2hjr_A           67 ---S------------------PAKIFGENNY-EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-P  123 (328)
T ss_dssp             ---C------------------CCCEEEESCG-GGGTTCSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-T
T ss_pred             ---C------------------CCEEEECCCH-HHHCCCCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-C
Confidence               0                  0268888888 7799999999998  54              23777888888876 4


Q ss_pred             cCCCCEEEEeeecC
Q 019978          187 RITVPVIISLAKGV  200 (333)
Q Consensus       187 ~~~~~~Ivs~~kGi  200 (333)
                         +..++..+|-.
T Consensus       124 ---~a~viv~tNP~  134 (328)
T 2hjr_A          124 ---NAFVICITNPL  134 (328)
T ss_dssp             ---TCEEEECCSSH
T ss_pred             ---CeEEEEecCch
Confidence               56766667643

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=98.84  E-value=3.4e-08  Score=103.87  Aligned_cols=119  Identities=14%  Similarity=0.192  Sum_probs=86.3

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ...||+|||+|.||+.||..++.. |     ++|++++++++.+++... .+...+...       .... ...      
T Consensus       315 ~i~~v~ViGaG~MG~gIA~~~a~a-G-----~~V~l~D~~~~~l~~~~~-~i~~~l~~~-------~~~~-~~~------  373 (742)
T 3zwc_A          315 PVSSVGVLGLGTMGRGIAISFARV-G-----ISVVAVESDPKQLDAAKK-IITFTLEKE-------ASRA-HQN------  373 (742)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSHHHHHHHHH-HHHHHHHHH-------HHHH-HTT------
T ss_pred             cccEEEEEcccHHHHHHHHHHHhC-C-----CchhcccchHhhhhhHHH-HHHHHHHHH-------HHhc-ccc------
Confidence            457999999999999999999999 8     999999999987654321 111111110       0000 000      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                       + .                +.....+..+++.++ +.+||+||.||+..  ...++++++..++++   ++++.|.|++
T Consensus       374 -~-~----------------~~~~~~~~~~~~~~~-l~~aDlVIEAV~E~l~iK~~vf~~le~~~~~---~aIlASNTSs  431 (742)
T 3zwc_A          374 -G-Q----------------ASAKPKLRFSSSTKE-LSTVDLVVEAVFEDMNLKKKVFAELSALCKP---GAFLCTNTSA  431 (742)
T ss_dssp             -T-C----------------CCCCCCEEEESCGGG-GGSCSEEEECCCSCHHHHHHHHHHHHHHSCT---TCEEEECCSS
T ss_pred             -c-h----------------hhhhhhhcccCcHHH-HhhCCEEEEeccccHHHHHHHHHHHhhcCCC---CceEEecCCc
Confidence             0 0                111236788888764 78999999999986  689999999999998   8988888888


Q ss_pred             Cccc
Q 019978          200 VEAE  203 (333)
Q Consensus       200 i~~~  203 (333)
                      +...
T Consensus       432 l~i~  435 (742)
T 3zwc_A          432 LNVD  435 (742)
T ss_dssp             SCHH
T ss_pred             CChH
Confidence            8865

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=98.79  E-value=2.4e-08  Score=94.84  Aligned_cols=103  Identities=17%  Similarity=0.213  Sum_probs=71.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCe--eEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~--~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      |||+|||+|+||+++|..|+.+ |     +  +|++|++++++++.+..     -+...         .+ +...     
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~-g-----~~~~V~l~D~~~~~~~~~~~-----~l~~~---------~~-~~~~-----   54 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMK-G-----FAREMVLIDVDKKRAEGDAL-----DLIHG---------TP-FTRR-----   54 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-T-----CCSEEEEECSSHHHHHHHHH-----HHHHH---------GG-GSCC-----
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-C-----CCCeEEEEeCChHHHHHHHH-----HHHhh---------hh-hcCC-----
Confidence            6999999999999999999999 8     7  99999999876543211     00000         00 0000     


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh----------------HHHHHHHHHhhhh
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE----------------TKEVFEEISRYWK  185 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~----------------~~~vl~~i~~~l~  185 (333)
                                              ..+.. +|. +++++||+||+++|...                +.++++++.++. 
T Consensus        55 ------------------------~~i~~-~d~-~~~~~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-  107 (319)
T 1a5z_A           55 ------------------------ANIYA-GDY-ADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-  107 (319)
T ss_dssp             ------------------------CEEEE-CCG-GGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             ------------------------cEEEe-CCH-HHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-
Confidence                                    13444 354 56889999999999633                577888888774 


Q ss_pred             ccCCCCEEEEeeecCcc
Q 019978          186 ERITVPVIISLAKGVEA  202 (333)
Q Consensus       186 ~~~~~~~Ivs~~kGi~~  202 (333)
                      +   ++.++.++|++..
T Consensus       108 ~---~~~ii~~tNp~~~  121 (319)
T 1a5z_A          108 P---DSIVIVVTNPVDV  121 (319)
T ss_dssp             T---TCEEEECSSSHHH
T ss_pred             C---CeEEEEeCCcHHH
Confidence            3   5778888887664

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=98.71  E-value=4.1e-08  Score=89.69  Aligned_cols=128  Identities=9%  Similarity=0.083  Sum_probs=87.1

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ..|||+|||+|.||++||..|.++ |     ++|+.|++.+                                       
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~-G-----~~V~~~~~~~---------------------------------------   39 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSV-G-----HYVTVLHAPE---------------------------------------   39 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHT-T-----CEEEECSSGG---------------------------------------
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEecCHH---------------------------------------
Confidence            458999999999999999999999 8     9999887631                                       


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                                        + +.++|  |+|||.+.+.++++++.+++++   +++|++++..+.
T Consensus        40 ----------------------------------~-~~~aD--ilavP~~ai~~vl~~l~~~l~~---g~ivvd~sgs~~   79 (232)
T 3dfu_A           40 ----------------------------------D-IRDFE--LVVIDAHGVEGYVEKLSAFARR---GQMFLHTSLTHG   79 (232)
T ss_dssp             ----------------------------------G-GGGCS--EEEECSSCHHHHHHHHHTTCCT---TCEEEECCSSCC
T ss_pred             ----------------------------------H-hccCC--EEEEcHHHHHHHHHHHHHhcCC---CCEEEEECCcCH
Confidence                                              0 23578  9999999999999999998876   788887653222


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCcEEEE-cCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEecCC
Q 019978          202 AELEAVPRIITPTQMINRATGVPIENILYL-GGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD  276 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl-~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~s~D  276 (333)
                      .+            +++......   ..++ .-|-+      +. ...+...+++..+.++.++...|-+++..++
T Consensus        80 ~~------------vl~~~~~~g---~~fvg~HPm~------g~-~~~i~a~d~~a~~~l~~L~~~lG~~vv~~~~  133 (232)
T 3dfu_A           80 IT------------VMDPLETSG---GIVMSAHPIG------QD-RWVASALDELGETIVGLLVGELGGSIVEIAD  133 (232)
T ss_dssp             GG------------GGHHHHHTT---CEEEEEEEEE------TT-EEEEEESSHHHHHHHHHHHHHTTCEECCCCG
T ss_pred             HH------------HHHHHHhCC---CcEEEeeeCC------CC-ceeeeCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence            21            223222111   1122 12322      21 2222344666788899999988888776554

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=98.69  E-value=7e-08  Score=91.29  Aligned_cols=107  Identities=16%  Similarity=0.129  Sum_probs=71.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|+||+++|..|+.+ +.   +++|++|++++++++.+..     -+..             ..+..      
T Consensus         1 mkI~VIGaG~vG~~la~~la~~-~~---g~~V~l~D~~~~~~~~~~~-----~l~~-------------~~~~~------   52 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEK-QL---ARELVLLDVVEGIPQGKAL-----DMYE-------------SGPVG------   52 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TC---CSEEEEECSSSSHHHHHHH-----HHHT-------------THHHH------
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CC---CCEEEEEeCChhHHHHHHH-----hHHh-------------hhhcc------
Confidence            7999999999999999999985 21   1899999999876643210     0000             00000      


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------------hHHHHHHHHHhhhhcc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWKER  187 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~----------------~~~~vl~~i~~~l~~~  187 (333)
                       ..                  ..++..++|.++ +++||+||+++|..                .+.++++.+.++. + 
T Consensus        53 -~~------------------~~~i~~t~d~~~-l~~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~-  110 (310)
T 1guz_A           53 -LF------------------DTKVTGSNDYAD-TANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-K-  110 (310)
T ss_dssp             -TC------------------CCEEEEESCGGG-GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-S-
T ss_pred             -cC------------------CcEEEECCCHHH-HCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-C-
Confidence             00                  014677788866 89999999999652                2356666666664 3 


Q ss_pred             CCCCEEEEeeecCcc
Q 019978          188 ITVPVIISLAKGVEA  202 (333)
Q Consensus       188 ~~~~~Ivs~~kGi~~  202 (333)
                        +..++.++|.+..
T Consensus       111 --~~~viv~tNP~~~  123 (310)
T 1guz_A          111 --NPIIIVVSNPLDI  123 (310)
T ss_dssp             --SCEEEECCSSHHH
T ss_pred             --CcEEEEEcCchHH
Confidence              5677777876553

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=98.69  E-value=1.1e-07  Score=90.61  Aligned_cols=105  Identities=16%  Similarity=0.165  Sum_probs=73.1

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .+|||+|||+|.||+++|..|+.. |     + +|.+||+++++++....     .+...             +...   
T Consensus         3 ~~~kI~VIGaG~vG~~ia~~la~~-g-----~~~v~L~Di~~~~l~~~~~-----~l~~~-------------~~~~---   55 (322)
T 1t2d_A            3 PKAKIVLVGSGMIGGVMATLIVQK-N-----LGDVVLFDIVKNMPHGKAL-----DTSHT-------------NVMA---   55 (322)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECSSSSHHHHHHH-----HHHTH-------------HHHH---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEeCCHHHHHHHHH-----HHHhh-------------hhhc---
Confidence            357999999999999999999998 7     6 89999999876642110     01100             0000   


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cch-------------------hHHHHHHH
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PST-------------------ETKEVFEE  179 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaV--ps~-------------------~~~~vl~~  179 (333)
                          ..                  ..+++.++|. +++++||+||+++  |..                   .+.+++++
T Consensus        56 ----~~------------------~~~i~~t~d~-~al~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~  112 (322)
T 1t2d_A           56 ----YS------------------NCKVSGSNTY-DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGH  112 (322)
T ss_dssp             ----TC------------------CCCEEEECCG-GGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHH
T ss_pred             ----CC------------------CcEEEECCCH-HHhCCCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence                00                  0257787888 7799999999998  531                   47777888


Q ss_pred             HHhhhhccCCCCEEEEeeecC
Q 019978          180 ISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       180 i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                      +.++. +   ++.++..+|-.
T Consensus       113 i~~~~-p---~a~iiv~tNP~  129 (322)
T 1t2d_A          113 IKKNC-P---NAFIIVVTNPV  129 (322)
T ss_dssp             HHHHC-T---TSEEEECSSSH
T ss_pred             HHHHC-C---CeEEEEecCCh
Confidence            88776 4   56776666643

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=98.67  E-value=5.1e-08  Score=92.04  Aligned_cols=103  Identities=17%  Similarity=0.122  Sum_probs=68.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCe--eEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~--~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      |||+|||+|.||+++|..|+.+ |     +  +|.+||+++++++..       ...-.        +   ..+.     
T Consensus         1 mkI~VIGaG~vG~~la~~la~~-g-----~~~eV~L~D~~~~~~~~~-------~~~l~--------~---~~~~-----   51 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLR-G-----SCSELVLVDRDEDRAQAE-------AEDIA--------H---AAPV-----   51 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CCSEEEEECSSHHHHHHH-------HHHHT--------T---SCCT-----
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-C-----CCCEEEEEeCCHHHHHHH-------HHhhh--------h---hhhh-----
Confidence            6999999999999999999998 8     7  899999997644310       00000        0   0000     


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------------hHHHHHHHHHhhhh
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWK  185 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~----------------~~~~vl~~i~~~l~  185 (333)
                          ++                 ...+.. ++. +++++||+||++++..                .++++++++.++. 
T Consensus        52 ----~~-----------------~~~i~~-~~~-~a~~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-  107 (304)
T 2v6b_A           52 ----SH-----------------GTRVWH-GGH-SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-  107 (304)
T ss_dssp             ----TS-----------------CCEEEE-ECG-GGGTTCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-
T ss_pred             ----cC-----------------CeEEEE-CCH-HHhCCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-
Confidence                00                 013443 454 5789999999999533                3477888888874 


Q ss_pred             ccCCCCEEEEeeecCcc
Q 019978          186 ERITVPVIISLAKGVEA  202 (333)
Q Consensus       186 ~~~~~~~Ivs~~kGi~~  202 (333)
                      +   ++.++.++|+...
T Consensus       108 p---~~~vi~~tNP~~~  121 (304)
T 2v6b_A          108 P---DAVLLVTSNPVDL  121 (304)
T ss_dssp             S---SSEEEECSSSHHH
T ss_pred             C---CeEEEEecCchHH
Confidence            4   6777778887664

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=98.63  E-value=1.1e-07  Score=89.70  Aligned_cols=104  Identities=11%  Similarity=0.019  Sum_probs=68.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCe--eEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~--~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      |||+|||+|.||+++|..|+.+ |     +  +|.+||+++++++..       .++-.+       .++ +++      
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~-~-----~~~~v~L~D~~~~~~~g~-------~~dl~~-------~~~-~~~------   53 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLN-L-----DVDEIALVDIAEDLAVGE-------AMDLAH-------AAA-GID------   53 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-S-----CCSEEEEECSSHHHHHHH-------HHHHHH-------HHH-TTT------
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-C-----CCCeEEEEECChHHHHHH-------HHHHHh-------hhh-hcC------
Confidence            7999999999999999999998 7     6  899999998765311       011100       011 111      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------------hHHHHHHHHHhhhh
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWK  185 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~----------------~~~~vl~~i~~~l~  185 (333)
                          .+                  ..+..++| .+++++||+||++....                .++++.+++.++ .
T Consensus        54 ----~~------------------~~i~~t~d-~~a~~~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~  109 (294)
T 1oju_A           54 ----KY------------------PKIVGGAD-YSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-A  109 (294)
T ss_dssp             ----CC------------------CEEEEESC-GGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred             ----CC------------------CEEEEeCC-HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-C
Confidence                00                  14677778 77899999999986321                244555555555 3


Q ss_pred             ccCCCCEEEEeeecCc
Q 019978          186 ERITVPVIISLAKGVE  201 (333)
Q Consensus       186 ~~~~~~~Ivs~~kGi~  201 (333)
                      +   +..++..+|-+.
T Consensus       110 p---~a~iivvsNPvd  122 (294)
T 1oju_A          110 P---ESKILVVTNPMD  122 (294)
T ss_dssp             T---TCEEEECSSSHH
T ss_pred             C---CeEEEEeCCcch
Confidence            3   577777776443

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=98.61  E-value=7.4e-08  Score=92.34  Aligned_cols=92  Identities=18%  Similarity=0.256  Sum_probs=71.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||+|.||.++|..+... |     ++|.+|+|+++..+                                    
T Consensus       164 g~~vgIIG~G~iG~~vA~~l~~~-G-----~~V~~~dr~~~~~~------------------------------------  201 (333)
T 3ba1_A          164 GKRVGIIGLGRIGLAVAERAEAF-D-----CPISYFSRSKKPNT------------------------------------  201 (333)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSSCCTTC------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCCchhcc------------------------------------
Confidence            47999999999999999999988 8     89999999875210                                    


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                              .....+++++++.++|+|++++|.. .++.++ ++..+.+++   ++++|+++.|-
T Consensus       202 ------------------------g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~---gailIn~srG~  254 (333)
T 3ba1_A          202 ------------------------NYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGP---KGVLINIGRGP  254 (333)
T ss_dssp             ------------------------CSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCT---TCEEEECSCGG
T ss_pred             ------------------------CceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCC---CCEEEECCCCc
Confidence                                    1223467888889999999999985 455555 334456666   78999999886


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ...
T Consensus       255 ~vd  257 (333)
T 3ba1_A          255 HVD  257 (333)
T ss_dssp             GBC
T ss_pred             hhC
Confidence            654

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=98.59  E-value=1.1e-07  Score=95.38  Aligned_cols=111  Identities=15%  Similarity=0.229  Sum_probs=74.8

Q ss_pred             ceEEEECCCHH-HHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           44 LRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        44 ~kI~IIGaG~m-G~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      |||+|||+|+| |.++|..|+.+...+. .++|.|||+++++++.++.  +   . .            .+++..     
T Consensus        29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~-~~eV~L~Di~~e~~~~~~~--~---~-~------------~~l~~~-----   84 (472)
T 1u8x_X           29 FSIVIAGGGSTFTPGIVLMLLDHLEEFP-IRKLKLYDNDKERQDRIAG--A---C-D------------VFIREK-----   84 (472)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSC-EEEEEEECSCHHHHHHHHH--H---H-H------------HHHHHH-----
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCCCCC-CCEEEEEeCCHHHHHHHHH--H---H-H------------HHhccC-----
Confidence            69999999999 7778877776510111 1789999999987654321  0   0 0            122221     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh------------------------------
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE------------------------------  172 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~------------------------------  172 (333)
                        .++                  ..+..++|+++++++||+||+++|+..                              
T Consensus        85 --~~~------------------~~I~~t~D~~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~  144 (472)
T 1u8x_X           85 --APD------------------IEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYG  144 (472)
T ss_dssp             --CTT------------------SEEEEESCHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHH
T ss_pred             --CCC------------------CEEEEECCHHHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHH
Confidence              111                  257888999889999999999999832                              


Q ss_pred             ------HHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          173 ------TKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       173 ------~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                            +.++++++.++.+    ++.++..+|-+..
T Consensus       145 ~rni~i~~~i~~~i~~~~P----~A~ii~~TNPvdi  176 (472)
T 1u8x_X          145 MRSIGGVLEILDYMEKYSP----DAWMLNYSNPAAI  176 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHCT----TCEEEECCSCHHH
T ss_pred             hhhHHHHHHHHHHHHHHCC----CeEEEEeCCcHHH
Confidence                  4566666666654    6788888877654

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=98.55  E-value=1.7e-07  Score=93.99  Aligned_cols=83  Identities=22%  Similarity=0.282  Sum_probs=56.3

Q ss_pred             CceEEEECCCH--HHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGAGA--WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGaG~--mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      +|||+|||+|+  ||+++|..|+...+ +. +++|.|||+++++++.+...     ..             .+++..   
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~-l~-~~eV~L~Di~~e~l~~~~~~-----~~-------------~~l~~~---   59 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPG-LS-GSTVTLMDIDEERLDAILTI-----AK-------------KYVEEV---   59 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGG-GT-TCEEEEECSCHHHHHHHHHH-----HH-------------HHHHHT---
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCc-CC-CCEEEEEeCCHHHHHHHHHH-----HH-------------HHhccC---
Confidence            47999999999  47888888874311 10 17999999999876543210     00             112211   


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS  170 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps  170 (333)
                          ..+                  .+++.++|+++++++||+||+++|+
T Consensus        60 ----~~~------------------~~I~~ttD~~eal~dAD~VIiaagv   87 (480)
T 1obb_A           60 ----GAD------------------LKFEKTMNLDDVIIDADFVINTAMV   87 (480)
T ss_dssp             ----TCC------------------CEEEEESCHHHHHTTCSEEEECCCT
T ss_pred             ----CCC------------------cEEEEECCHHHHhCCCCEEEECCCc
Confidence                011                  2588889998889999999999975

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=98.51  E-value=3.1e-07  Score=88.32  Aligned_cols=92  Identities=16%  Similarity=0.264  Sum_probs=63.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|.||.++|..+... |     ++|..|+|+++...                                    
T Consensus       171 gktiGIIGlG~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~------------------------------------  208 (340)
T 4dgs_A          171 GKRIGVLGLGQIGRALASRAEAF-G-----MSVRYWNRSTLSGV------------------------------------  208 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSCCTTS------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCccccc------------------------------------
Confidence            37999999999999999999887 8     89999999874210                                    


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-hhHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps-~~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                              ......+++++++.||+|++++|. ..++.++ ++....+++   ++++|.++.|=
T Consensus       209 ------------------------~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~---gailIN~aRG~  261 (340)
T 4dgs_A          209 ------------------------DWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGP---EGIVVNVARGN  261 (340)
T ss_dssp             ------------------------CCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTT---TCEEEECSCC-
T ss_pred             ------------------------CceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCC---CCEEEECCCCc
Confidence                                    122346788889999999999994 4566665 455566776   78999998884


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ...
T Consensus       262 vvd  264 (340)
T 4dgs_A          262 VVD  264 (340)
T ss_dssp             ---
T ss_pred             ccC
Confidence            443

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=98.51  E-value=5.1e-07  Score=85.39  Aligned_cols=107  Identities=18%  Similarity=0.264  Sum_probs=68.6

Q ss_pred             hhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCe--eEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhccc
Q 019978           35 LMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCA  112 (333)
Q Consensus        35 ~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~--~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~  112 (333)
                      +-+..+..++||+|||+|.||+++|..++.. |     +  +|.|+|++++ +...   .    ..     +.+      
T Consensus         6 ~~~~~~~~~~kV~ViGaG~vG~~~a~~l~~~-g-----~~~ev~L~Di~~~-~~g~---a----~d-----l~~------   60 (303)
T 2i6t_A            6 WANHENKTVNKITVVGGGELGIACTLAISAK-G-----IADRLVLLDLSEG-TKGA---T----MD-----LEI------   60 (303)
T ss_dssp             --------CCEEEEECCSHHHHHHHHHHHHH-T-----CCSEEEEECCC------C---H----HH-----HHH------
T ss_pred             cccccCCCCCEEEEECCCHHHHHHHHHHHhc-C-----CCCEEEEEcCCcc-hHHH---H----HH-----Hhh------
Confidence            3444455568999999999999999999998 7     6  8999999985 3210   0    00     000      


Q ss_pred             ccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec-------------Cc--hhHHHHH
Q 019978          113 YLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL-------------PS--TETKEVF  177 (333)
Q Consensus       113 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaV-------------ps--~~~~~vl  177 (333)
                       +.          .                   .+++.++|. +++++||+||+++             +.  ..+.+++
T Consensus        61 -~~----------~-------------------~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~  109 (303)
T 2i6t_A           61 -FN----------L-------------------PNVEISKDL-SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALV  109 (303)
T ss_dssp             -HT----------C-------------------TTEEEESCG-GGGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHH
T ss_pred             -hc----------C-------------------CCeEEeCCH-HHHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence             00          0                   146777888 6789999999997             22  2477888


Q ss_pred             HHHHhhhhccCCCCEEEEeeecCc
Q 019978          178 EEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       178 ~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                      +++.++. +   +.+++.++|-+.
T Consensus       110 ~~i~~~~-p---~a~iiv~sNP~~  129 (303)
T 2i6t_A          110 PALGHYS-Q---HSVLLVASQPVE  129 (303)
T ss_dssp             HHHHHHT-T---TCEEEECSSSHH
T ss_pred             HHHHHhC-C---CeEEEEcCChHH
Confidence            8888876 4   577777777443

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=98.48  E-value=1.6e-07  Score=89.63  Aligned_cols=95  Identities=18%  Similarity=0.217  Sum_probs=69.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||+|.||.++|..++.. |     ++|++|+|+++..+..                          ..      
T Consensus       155 g~~vgIIG~G~iG~~iA~~l~~~-G-----~~V~~~d~~~~~~~~~--------------------------~~------  196 (330)
T 2gcg_A          155 QSTVGIIGLGRIGQAIARRLKPF-G-----VQRFLYTGRQPRPEEA--------------------------AE------  196 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGG-T-----CCEEEEESSSCCHHHH--------------------------HT------
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCcchhHH--------------------------Hh------
Confidence            47999999999999999999988 8     8999999987643210                          00      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                             ..+... ++++++.++|+|++++|.. .++.++ +++.+.+++   ++++|+++.|-
T Consensus       197 -----------------------~g~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~---gailIn~srg~  249 (330)
T 2gcg_A          197 -----------------------FQAEFV-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKE---TAVFINISRGD  249 (330)
T ss_dssp             -----------------------TTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCT---TCEEEECSCGG
T ss_pred             -----------------------cCceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCC---CcEEEECCCCc
Confidence                                   023333 7778889999999999975 344444 345556666   78888888774


Q ss_pred             cc
Q 019978          201 EA  202 (333)
Q Consensus       201 ~~  202 (333)
                      ..
T Consensus       250 ~v  251 (330)
T 2gcg_A          250 VV  251 (330)
T ss_dssp             GB
T ss_pred             cc
Confidence            43

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.48  E-value=3.3e-07  Score=74.66  Aligned_cols=38  Identities=18%  Similarity=0.189  Sum_probs=33.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .|+|+|+|+|.+|..++..|.+. |     ++|++++++++.++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~-g-----~~v~~~d~~~~~~~   41 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEK-G-----HDIVLIDIDKDICK   41 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHH
Confidence            37999999999999999999998 8     99999999876544

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.48  E-value=1.1e-06  Score=73.98  Aligned_cols=103  Identities=20%  Similarity=0.180  Sum_probs=66.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ++|.|+|+|.||..++..|... |     ++|+++++++++++.++.        ..         +.....+      +
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~-g-----~~V~vid~~~~~~~~~~~--------~~---------g~~~~~~------d   70 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSS-G-----HSVVVVDKNEYAFHRLNS--------EF---------SGFTVVG------D   70 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCGGGGGGSCT--------TC---------CSEEEES------C
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHh--------cC---------CCcEEEe------c
Confidence            7999999999999999999998 8     899999999876543210        00         0000000      0


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHH-hcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea-~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                        .                   ..   ...+.++ ++++|+||+++|+......+..+.+.+.+   ...++..+++...
T Consensus        71 --~-------------------~~---~~~l~~~~~~~ad~Vi~~~~~~~~~~~~~~~~~~~~~---~~~iv~~~~~~~~  123 (155)
T 2g1u_A           71 --A-------------------AE---FETLKECGMEKADMVFAFTNDDSTNFFISMNARYMFN---VENVIARVYDPEK  123 (155)
T ss_dssp             --T-------------------TS---HHHHHTTTGGGCSEEEECSSCHHHHHHHHHHHHHTSC---CSEEEEECSSGGG
T ss_pred             --C-------------------CC---HHHHHHcCcccCCEEEEEeCCcHHHHHHHHHHHHHCC---CCeEEEEECCHHH
Confidence              0                   00   0112222 56899999999998777666666665443   4567776666443

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=98.48  E-value=1.7e-07  Score=89.71  Aligned_cols=96  Identities=19%  Similarity=0.305  Sum_probs=71.9

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ..++|+|||+|.||..+|..++.. |     ++|.+|+|+++. +..         .+                 .    
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~-G-----~~V~~~d~~~~~-~~~---------~~-----------------~----  191 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGF-N-----MRILYYSRTRKE-EVE---------RE-----------------L----  191 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCH-HHH---------HH-----------------H----
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhC-C-----CEEEEECCCcch-hhH---------hh-----------------c----
Confidence            347999999999999999999988 8     899999998864 210         00                 0    


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHH-HHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~-~~~vl-~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                               .+.. +++++++.++|+|++++|... ++.++ +++.+.+++   ++++|++++|
T Consensus       192 -------------------------g~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~---~ailIn~srg  242 (334)
T 2dbq_A          192 -------------------------NAEF-KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKK---TAILINIARG  242 (334)
T ss_dssp             -------------------------CCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCT---TCEEEECSCG
T ss_pred             -------------------------Cccc-CCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCC---CcEEEECCCC
Confidence                                     1222 467788899999999999875 55555 355566776   7889999888


Q ss_pred             Cccc
Q 019978          200 VEAE  203 (333)
Q Consensus       200 i~~~  203 (333)
                      -...
T Consensus       243 ~~v~  246 (334)
T 2dbq_A          243 KVVD  246 (334)
T ss_dssp             GGBC
T ss_pred             cccC
Confidence            6554

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=98.46  E-value=2e-07  Score=87.74  Aligned_cols=92  Identities=12%  Similarity=0.173  Sum_probs=70.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|.||..+|..+... |     ++|+.|+|+++..+                                    
T Consensus       122 g~tvGIIGlG~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~------------------------------------  159 (290)
T 3gvx_A          122 GKALGILGYGGIGRRVAHLAKAF-G-----MRVIAYTRSSVDQN------------------------------------  159 (290)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSSCCCTT------------------------------------
T ss_pred             cchheeeccCchhHHHHHHHHhh-C-----cEEEEEeccccccc------------------------------------
Confidence            37999999999999999999988 8     99999999875321                                    


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-hhHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps-~~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                              .....++++++++.+|+|++++|. ..++.++ ++....+++   ++++|.++.|-
T Consensus       160 ------------------------~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~---gailIN~aRG~  212 (290)
T 3gvx_A          160 ------------------------VDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARK---NLTIVNVARAD  212 (290)
T ss_dssp             ------------------------CSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCT---TCEEEECSCGG
T ss_pred             ------------------------cccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhc---CceEEEeehhc
Confidence                                    122345788889999999999995 3444444 445556676   78999988775


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ...
T Consensus       213 ~vd  215 (290)
T 3gvx_A          213 VVS  215 (290)
T ss_dssp             GBC
T ss_pred             ccC
Confidence            543

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=98.46  E-value=3.7e-07  Score=90.87  Aligned_cols=111  Identities=13%  Similarity=0.154  Sum_probs=75.1

Q ss_pred             CceEEEECCCHH-HHHHHHHHHHh-cCCCCCCeeEEEEecCC--cchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhh
Q 019978           43 PLRIVGVGAGAW-GSVFTAMLQDS-YGYLRDKVLIRIWRRPG--RSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE  118 (333)
Q Consensus        43 ~~kI~IIGaG~m-G~alA~~La~~-~G~~~~~~~V~l~~r~~--~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~  118 (333)
                      .|||+|||+|+| |.+++..|+.+ .+ +. .++|.|||+++  ++++.+..  +    ..            .+++.. 
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~-l~-~~ev~L~Di~~~~e~~~~~~~--~----~~------------~~~~~~-   65 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHE-LP-VGELWLVDIPEGKEKLEIVGA--L----AK------------RMVEKA-   65 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTT-CC-EEEEEEECCGGGHHHHHHHHH--H----HH------------HHHHHT-
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCC-CC-CCEEEEEEcCCChHHHHHHHH--H----HH------------HHHhhc-
Confidence            479999999999 88888888872 02 11 17899999998  77654221  0    00            111111 


Q ss_pred             hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--------------------------
Q 019978          119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--------------------------  172 (333)
Q Consensus       119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~--------------------------  172 (333)
                            ..+                  ..++.++|.++++++||+||++++...                          
T Consensus        66 ------~~~------------------~~i~~t~D~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~gg  121 (450)
T 1s6y_A           66 ------GVP------------------IEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGG  121 (450)
T ss_dssp             ------TCC------------------CEEEEESCHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHH
T ss_pred             ------CCC------------------cEEEEeCCHHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccch
Confidence                  011                  257788999889999999999999632                          


Q ss_pred             ----------HHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          173 ----------TKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       173 ----------~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                                +.++++++.++.+    ++.++..+|-+..
T Consensus       122 i~~~~rni~i~~~i~~~i~~~~P----~a~ii~~tNPvdi  157 (450)
T 1s6y_A          122 LFKGLRTIPVILDIIRDMEELCP----DAWLINFTNPAGM  157 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCT----TCEEEECSSSHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHHCC----CeEEEEeCCcHHH
Confidence                      4566666666654    6788888877653

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=98.42  E-value=1.9e-06  Score=82.33  Aligned_cols=105  Identities=12%  Similarity=0.187  Sum_probs=70.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      +|||+|||+|.||+++|..|+.+ |     + +|.+||+++++++...       ++     +++    ...+..     
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~-~-----~~~v~L~Di~~~~~~g~~-------~d-----l~~----~~~~~~-----   59 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLK-E-----LGDVVLFDIAEGTPQGKG-------LD-----IAE----SSPVDG-----   59 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECSSSSHHHHHH-------HH-----HHH----HHHHHT-----
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEeCCchhHHHHH-------HH-----Hhc----hhhhcC-----
Confidence            47999999999999999999998 7     7 9999999997654211       00     010    000000     


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------hhHHHHHHHHHhhhh
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWK  185 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps----------------~~~~~vl~~i~~~l~  185 (333)
                          .+                  ..+..++|. +++++||+||++...                ..++++.+.+.++. 
T Consensus        60 ----~~------------------~~v~~t~d~-~a~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-  115 (324)
T 3gvi_A           60 ----FD------------------AKFTGANDY-AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-  115 (324)
T ss_dssp             ----CC------------------CCEEEESSG-GGGTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             ----CC------------------CEEEEeCCH-HHHCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-
Confidence                00                  157777787 689999999998632                13455666666654 


Q ss_pred             ccCCCCEEEEeeecCc
Q 019978          186 ERITVPVIISLAKGVE  201 (333)
Q Consensus       186 ~~~~~~~Ivs~~kGi~  201 (333)
                      +   +..++.++|-..
T Consensus       116 p---~a~iivvtNPvd  128 (324)
T 3gvi_A          116 P---EAFVICITNPLD  128 (324)
T ss_dssp             T---TCEEEECCSSHH
T ss_pred             C---CeEEEecCCCcH
Confidence            3   577887776544

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=98.40  E-value=9.2e-07  Score=88.02  Aligned_cols=106  Identities=17%  Similarity=0.232  Sum_probs=74.9

Q ss_pred             ceEEEECCCH--HHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           44 LRIVGVGAGA--WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        44 ~kI~IIGaG~--mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      |||+|||+|+  ||.+++..|+.. ..+ . .+|.+||++++++++++.      +.             ..+..     
T Consensus         6 ~KIaVIGaGs~g~g~~la~~l~~~-~~~-~-geV~L~Di~~e~le~~~~------~~-------------~~l~~-----   58 (450)
T 3fef_A            6 IKIAYIGGGSQGWARSLMSDLSID-ERM-S-GTVALYDLDFEAAQKNEV------IG-------------NHSGN-----   58 (450)
T ss_dssp             EEEEEETTTCSSHHHHHHHHHHHC-SSC-C-EEEEEECSSHHHHHHHHH------HH-------------TTSTT-----
T ss_pred             CEEEEECCChhHhHHHHHHHHHhc-ccc-C-CeEEEEeCCHHHHHHHHH------HH-------------HHHhc-----
Confidence            7999999999  689999999874 222 2 389999999877654321      00             11110     


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch------------------------------
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST------------------------------  171 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~------------------------------  171 (333)
                          .+                  .++++|+|+++|+++||+||++++..                              
T Consensus        59 ----~~------------------~~I~~TtD~~eAl~dADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi  116 (450)
T 3fef_A           59 ----GR------------------WRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGI  116 (450)
T ss_dssp             ----SC------------------EEEEEESSHHHHHTTCSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHH
T ss_pred             ----cC------------------CeEEEECCHHHHhcCCCEEEeccccCCcccchhhhhhhhccCccccchhhcCCchh
Confidence                00                  25889999999999999999999741                              


Q ss_pred             --------hHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          172 --------ETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       172 --------~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                              .+.++++++.++.+    +..++..+|-+..
T Consensus       117 ~~alr~~~i~~~i~~~i~~~~p----~a~~i~~tNPvdi  151 (450)
T 3fef_A          117 IRGLRAVPIFAEIARAIRDYAP----ESWVINYTNPMSV  151 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCT----TSEEEECCSSHHH
T ss_pred             hcccccHHHHHHHHHHHHHHCC----CeEEEEecCchHH
Confidence                    15666666666643    6788888877654

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=98.39  E-value=1.7e-06  Score=81.81  Aligned_cols=104  Identities=13%  Similarity=0.047  Sum_probs=68.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      |||+|||+|.||+.++..|+.. |     + +|.++|+++++++...     .-+..             .....     
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~-g-----~~~v~L~Di~~~~~~g~~-----~dl~~-------------~~~~~-----   53 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAK-E-----LGDIVLLDIVEGVPQGKA-----LDLYE-------------ASPIE-----   53 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CSEEEEECSSSSHHHHHH-----HHHHT-------------THHHH-----
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-C-----CCeEEEEeCCccHHHHHH-----HhHHH-------------hHhhc-----
Confidence            6999999999999999999998 7     5 7999999987654210     00000             00000     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------hhHHHHHHHHHhhhhc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKE  186 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps----------------~~~~~vl~~i~~~l~~  186 (333)
                         .                 ...++..++|. +++++||+||+++..                ..+.++++.+.++. +
T Consensus        54 ---~-----------------~~~~i~~t~d~-~a~~~aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p  111 (309)
T 1ur5_A           54 ---G-----------------FDVRVTGTNNY-ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-P  111 (309)
T ss_dssp             ---T-----------------CCCCEEEESCG-GGGTTCSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-T
T ss_pred             ---C-----------------CCeEEEECCCH-HHHCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-C
Confidence               0                 00257777888 679999999999732                12445666666654 3


Q ss_pred             cCCCCEEEEeeecCc
Q 019978          187 RITVPVIISLAKGVE  201 (333)
Q Consensus       187 ~~~~~~Ivs~~kGi~  201 (333)
                         +..++..+|-+.
T Consensus       112 ---~a~vi~~tNPv~  123 (309)
T 1ur5_A          112 ---NAVIIMVNNPLD  123 (309)
T ss_dssp             ---TCEEEECCSSHH
T ss_pred             ---CeEEEEcCCchH
Confidence               567766676443

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=98.38  E-value=1.6e-06  Score=82.21  Aligned_cols=42  Identities=21%  Similarity=0.271  Sum_probs=34.4

Q ss_pred             CCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        40 ~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      +..++||+|||+|.||+++|..++.. |..   .+|.++|++++.+
T Consensus         3 ~~~~~kI~IIGaG~vG~sla~~l~~~-~~~---~ev~l~Di~~~~~   44 (316)
T 1ldn_A            3 NNGGARVVVIGAGFVGASYVFALMNQ-GIA---DEIVLIDANESKA   44 (316)
T ss_dssp             TTTSCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhC-CCC---CEEEEEeCCcchH
Confidence            44568999999999999999999887 621   3899999997643

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=98.36  E-value=4.9e-07  Score=87.03  Aligned_cols=95  Identities=18%  Similarity=0.173  Sum_probs=69.0

Q ss_pred             CCceEEEECCCHHHHHHHHHHH-HhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La-~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .-++|+|||+|.||..+|..+. .. |     ++|.+|+|+++..+...         +                 .   
T Consensus       162 ~g~~vgIIG~G~IG~~vA~~l~~~~-G-----~~V~~~d~~~~~~~~~~---------~-----------------~---  206 (348)
T 2w2k_A          162 RGHVLGAVGLGAIQKEIARKAVHGL-G-----MKLVYYDVAPADAETEK---------A-----------------L---  206 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT-C-----CEEEEECSSCCCHHHHH---------H-----------------H---
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHhc-C-----CEEEEECCCCcchhhHh---------h-----------------c---
Confidence            3479999999999999999998 77 7     89999999876432100         0                 0   


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeee
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                                .+...+++++.++++|+|++++|.. .+..++ +++.+.+++   ++++|+++.
T Consensus       207 --------------------------g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~---gailin~sr  257 (348)
T 2w2k_A          207 --------------------------GAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKP---GSRIVNTAR  257 (348)
T ss_dssp             --------------------------TCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCT---TEEEEECSC
T ss_pred             --------------------------CcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCC---CCEEEECCC
Confidence                                      1233357888889999999999975 355554 344455666   678888877


Q ss_pred             cC
Q 019978          199 GV  200 (333)
Q Consensus       199 Gi  200 (333)
                      |-
T Consensus       258 g~  259 (348)
T 2w2k_A          258 GP  259 (348)
T ss_dssp             GG
T ss_pred             Cc
Confidence            73

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=98.36  E-value=3.7e-07  Score=87.33  Aligned_cols=95  Identities=21%  Similarity=0.347  Sum_probs=70.7

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .-++|+|||+|.||.++|..+... |     ++|.+|+|+++. +..         .+                 .    
T Consensus       145 ~g~~vgIIG~G~iG~~vA~~l~~~-G-----~~V~~~d~~~~~-~~~---------~~-----------------~----  187 (333)
T 2d0i_A          145 YGKKVGILGMGAIGKAIARRLIPF-G-----VKLYYWSRHRKV-NVE---------KE-----------------L----  187 (333)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGG-T-----CEEEEECSSCCH-HHH---------HH-----------------H----
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEECCCcch-hhh---------hh-----------------c----
Confidence            347999999999999999999888 8     899999998863 210         00                 0    


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~-~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                               .+.. .++++++.++|+|++++|.. .+..++. ++.+.+++   + ++|++++|
T Consensus       188 -------------------------g~~~-~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~---g-ilin~srg  237 (333)
T 2d0i_A          188 -------------------------KARY-MDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEG---K-YLVNIGRG  237 (333)
T ss_dssp             -------------------------TEEE-CCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBT---C-EEEECSCG
T ss_pred             -------------------------Ccee-cCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCC---C-EEEECCCC
Confidence                                     1223 36778888999999999987 5665553 34456676   7 88888888


Q ss_pred             Cccc
Q 019978          200 VEAE  203 (333)
Q Consensus       200 i~~~  203 (333)
                      -...
T Consensus       238 ~~vd  241 (333)
T 2d0i_A          238 ALVD  241 (333)
T ss_dssp             GGBC
T ss_pred             cccC
Confidence            6654

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=98.36  E-value=6.7e-07  Score=85.06  Aligned_cols=95  Identities=24%  Similarity=0.380  Sum_probs=69.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|.||..+|..+... |     ++|+.|+|+++..+.                          ..       
T Consensus       139 g~tvGIiG~G~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~~--------------------------~~-------  179 (315)
T 3pp8_A          139 EFSVGIMGAGVLGAKVAESLQAW-G-----FPLRCWSRSRKSWPG--------------------------VE-------  179 (315)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTT-T-----CCEEEEESSCCCCTT--------------------------CE-------
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEEcCCchhhhh--------------------------hh-------
Confidence            37999999999999999999887 8     899999998753211                          00       


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                              ......++++.+..+|+|++++|.. .++.++ ++....+++   ++++|.++.|=
T Consensus       180 ------------------------~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~---gailIN~aRG~  232 (315)
T 3pp8_A          180 ------------------------SYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPD---GAYVLNLARGV  232 (315)
T ss_dssp             ------------------------EEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCT---TEEEEECSCGG
T ss_pred             ------------------------hhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCC---CCEEEECCCCh
Confidence                                    0111256788899999999999953 555555 444555676   78899988775


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ...
T Consensus       233 ~vd  235 (315)
T 3pp8_A          233 HVQ  235 (315)
T ss_dssp             GBC
T ss_pred             hhh
Confidence            443

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.35  E-value=2e-06  Score=81.71  Aligned_cols=41  Identities=10%  Similarity=-0.034  Sum_probs=31.9

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+|||+|||+|++|++++..|+.. |.+   .+|.++|+++++++
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~-~~~---~ev~L~Di~~~~~~   46 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALR-QTA---NELVLIDVFKEKAI   46 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHT-TCS---SEEEEECCC---CC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCChHHHH
Confidence            458999999999999999999998 711   28999999987654

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.33  E-value=2.9e-07  Score=85.40  Aligned_cols=119  Identities=21%  Similarity=0.240  Sum_probs=76.2

Q ss_pred             cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHH
Q 019978           15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLF   94 (333)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~   94 (333)
                      .|-+..+|-...--+.++++. +. .-..++|+|||+|.||.+++..|.+. |     .+|++|+|++++++++.     
T Consensus       103 ~g~~~g~nTd~~G~~~~l~~~-~~-~~~~~~v~iiGaG~~g~aia~~L~~~-g-----~~V~v~~r~~~~~~~l~-----  169 (275)
T 2hk9_A          103 NGKAYGYNTDWIGFLKSLKSL-IP-EVKEKSILVLGAGGASRAVIYALVKE-G-----AKVFLWNRTKEKAIKLA-----  169 (275)
T ss_dssp             TTEEEEECCHHHHHHHHHHHH-CT-TGGGSEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSSHHHHHHHT-----
T ss_pred             CCEEEeecCCHHHHHHHHHHh-CC-CcCCCEEEEECchHHHHHHHHHHHHc-C-----CEEEEEECCHHHHHHHH-----
Confidence            343444555455555555542 22 22347999999999999999999998 8     89999999976543210     


Q ss_pred             HHHhhhhhHHHHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHH
Q 019978           95 EVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETK  174 (333)
Q Consensus        95 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~  174 (333)
                          +                         .+                    .+.+.++++++++++|+||.|+|.....
T Consensus       170 ----~-------------------------~~--------------------g~~~~~~~~~~~~~aDiVi~atp~~~~~  200 (275)
T 2hk9_A          170 ----Q-------------------------KF--------------------PLEVVNSPEEVIDKVQVIVNTTSVGLKD  200 (275)
T ss_dssp             ----T-------------------------TS--------------------CEEECSCGGGTGGGCSEEEECSSTTSST
T ss_pred             ----H-------------------------Hc--------------------CCeeehhHHhhhcCCCEEEEeCCCCCCC
Confidence                0                         00                    2334446777788999999999987543


Q ss_pred             HHHHHH-HhhhhccCCCCEEEEeee
Q 019978          175 EVFEEI-SRYWKERITVPVIISLAK  198 (333)
Q Consensus       175 ~vl~~i-~~~l~~~~~~~~Ivs~~k  198 (333)
                      ++...+ ...+++   +++++.+..
T Consensus       201 ~~~~~i~~~~l~~---g~~viDv~~  222 (275)
T 2hk9_A          201 EDPEIFNYDLIKK---DHVVVDIIY  222 (275)
T ss_dssp             TCCCSSCGGGCCT---TSEEEESSS
T ss_pred             CCCCCCCHHHcCC---CCEEEEcCC
Confidence            211112 234555   677777654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.28  E-value=1.2e-06  Score=77.98  Aligned_cols=102  Identities=14%  Similarity=0.147  Sum_probs=68.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||.|+|+|.+|..+|..|.+. |     ++|++++++++.++++..        ..         +.....      ++
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~-g-----~~v~vid~~~~~~~~l~~--------~~---------~~~~i~------gd   51 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSR-K-----YGVVIINKDRELCEEFAK--------KL---------KATIIH------GD   51 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHT-T-----CCEEEEESCHHHHHHHHH--------HS---------SSEEEE------SC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHH--------Hc---------CCeEEE------cC
Confidence            7999999999999999999998 8     999999999876643211        00         000000      00


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHH-hcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea-~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                              ..-...++++ ++++|+||++++++.....+..+.+.+.+   ...+++.++.-.
T Consensus        52 ------------------------~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~---~~~iia~~~~~~  103 (218)
T 3l4b_C           52 ------------------------GSHKEILRDAEVSKNDVVVILTPRDEVNLFIAQLVMKDFG---VKRVVSLVNDPG  103 (218)
T ss_dssp             ------------------------TTSHHHHHHHTCCTTCEEEECCSCHHHHHHHHHHHHHTSC---CCEEEECCCSGG
T ss_pred             ------------------------CCCHHHHHhcCcccCCEEEEecCCcHHHHHHHHHHHHHcC---CCeEEEEEeCcc
Confidence                                    0000123333 67899999999999888877777765443   456776665544

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.25  E-value=1e-06  Score=83.29  Aligned_cols=94  Identities=19%  Similarity=0.332  Sum_probs=64.9

Q ss_pred             CCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        40 ~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      ..+.++|+|||+|.||.+++..|.+..|.    .+|.+|+|++++++++..        .              +.    
T Consensus       132 ~~~~~~igiIG~G~~g~~~a~~l~~~~g~----~~V~v~dr~~~~~~~l~~--------~--------------~~----  181 (312)
T 2i99_A          132 PPSSEVLCILGAGVQAYSHYEIFTEQFSF----KEVRIWNRTKENAEKFAD--------T--------------VQ----  181 (312)
T ss_dssp             CTTCCEEEEECCSHHHHHHHHHHHHHCCC----SEEEEECSSHHHHHHHHH--------H--------------SS----
T ss_pred             CCCCcEEEEECCcHHHHHHHHHHHHhCCC----cEEEEEcCCHHHHHHHHH--------H--------------hh----
Confidence            34568999999999999999999775230    489999999876543210        0              00    


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEe
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL  196 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~  196 (333)
                                                ..+...++++++++++|+|++++|+.  ..++..  ..+++   +++|+++
T Consensus       182 --------------------------~~~~~~~~~~e~v~~aDiVi~atp~~--~~v~~~--~~l~~---g~~vi~~  225 (312)
T 2i99_A          182 --------------------------GEVRVCSSVQEAVAGADVIITVTLAT--EPILFG--EWVKP---GAHINAV  225 (312)
T ss_dssp             --------------------------SCCEECSSHHHHHTTCSEEEECCCCS--SCCBCG--GGSCT---TCEEEEC
T ss_pred             --------------------------CCeEEeCCHHHHHhcCCEEEEEeCCC--CcccCH--HHcCC---CcEEEeC
Confidence                                      01445678888899999999999963  333322  35555   6777665

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=98.24  E-value=8.1e-06  Score=77.74  Aligned_cols=38  Identities=16%  Similarity=0.179  Sum_probs=34.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~   86 (333)
                      +|||+|||+|.||+++|..|+.. |     + +|.+||+++++++
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~-~-----~~~v~l~Di~~~~~~   43 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIK-Q-----LGDVVLFDIAQGMPN   43 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECSSSSHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-----CceEEEEeCChHHHH
Confidence            47999999999999999999998 7     6 8999999997653

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.24  E-value=1.9e-06  Score=70.98  Aligned_cols=39  Identities=13%  Similarity=0.173  Sum_probs=35.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +++|.|+|+|.+|..++..|.+. |     ++|++++++++.++.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~-g-----~~V~~id~~~~~~~~   44 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAA-G-----KKVLAVDKSKEKIEL   44 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESCHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHH
Confidence            46899999999999999999999 8     999999999876543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.23  E-value=1e-05  Score=67.01  Aligned_cols=39  Identities=23%  Similarity=0.236  Sum_probs=35.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      ..+|.|+|+|.+|..+|..|.+. |     ++|++++++++.+++
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~-g-----~~v~vid~~~~~~~~   45 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLAS-D-----IPLVVIETSRTRVDE   45 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESCHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEECCHHHHHH
Confidence            36899999999999999999998 8     999999999987654

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=98.23  E-value=1.8e-06  Score=83.37  Aligned_cols=97  Identities=26%  Similarity=0.316  Sum_probs=69.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|.||..+|..+... |     ++|..|+|++...+..                          ..      
T Consensus       164 gktvGIIG~G~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~~~--------------------------~~------  205 (351)
T 3jtm_A          164 GKTIGTVGAGRIGKLLLQRLKPF-G-----CNLLYHDRLQMAPELE--------------------------KE------  205 (351)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGG-C-----CEEEEECSSCCCHHHH--------------------------HH------
T ss_pred             CCEEeEEEeCHHHHHHHHHHHHC-C-----CEEEEeCCCccCHHHH--------------------------Hh------
Confidence            47999999999999999999877 8     8999999986432210                          00      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                             ..+...+++++.+..+|+|++++|.. .+..++ ++....+++   ++++|.++.|=
T Consensus       206 -----------------------~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~---gailIN~aRG~  259 (351)
T 3jtm_A          206 -----------------------TGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKK---GVLIVNNARGA  259 (351)
T ss_dssp             -----------------------HCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCT---TEEEEECSCGG
T ss_pred             -----------------------CCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCC---CCEEEECcCch
Confidence                                   02334467889999999999999953 333333 334445666   78899988775


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ...
T Consensus       260 ~vd  262 (351)
T 3jtm_A          260 IME  262 (351)
T ss_dssp             GBC
T ss_pred             hhC
Confidence            443

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=98.22  E-value=7.3e-06  Score=77.51  Aligned_cols=103  Identities=18%  Similarity=0.216  Sum_probs=69.5

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ||+|||+|.||++++..++.. |     + +|.|+|+++++++...    .+ +...           ...  .    . 
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~-~-----l~el~L~Di~~~~~~g~~----~d-l~~~-----------~~~--~----~-   51 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMR-G-----YDDLLLIARTPGKPQGEA----LD-LAHA-----------AAE--L----G-   51 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH-T-----CSCEEEECSSTTHHHHHH----HH-HHHH-----------HHH--H----T-
T ss_pred             CEEEECcCHHHHHHHHHHHhC-C-----CCEEEEEcCChhhHHHHH----HH-HHHh-----------hhh--c----C-
Confidence            799999999999999999988 7     5 7999999987653210    00 1000           000  0    0 


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------------hHHHHHHHHHhhhhcc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWKER  187 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~----------------~~~~vl~~i~~~l~~~  187 (333)
                        .                  ...++.++|. +++++||+||++.+..                .+.++++++.++. + 
T Consensus        52 --~------------------~~~i~~t~d~-~a~~~aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p-  108 (308)
T 2d4a_B           52 --V------------------DIRISGSNSY-EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-K-  108 (308)
T ss_dssp             --C------------------CCCEEEESCG-GGGTTCSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-T-
T ss_pred             --C------------------CeEEEECCCH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-C-
Confidence              0                  0257777787 6799999999996543                2777778887775 4 


Q ss_pred             CCCCEEEEeeecCc
Q 019978          188 ITVPVIISLAKGVE  201 (333)
Q Consensus       188 ~~~~~Ivs~~kGi~  201 (333)
                        +..++..+|-+.
T Consensus       109 --~a~iiv~tNPv~  120 (308)
T 2d4a_B          109 --DAIVVITTNPVD  120 (308)
T ss_dssp             --TCEEEECCSSHH
T ss_pred             --CeEEEEeCCchH
Confidence              567777777443

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.22  E-value=9.5e-07  Score=73.53  Aligned_cols=91  Identities=15%  Similarity=0.211  Sum_probs=62.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      .+||+|||+|.||.+++..|... |     ++|++|+|++++++++..        +              +.       
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~-g-----~~v~v~~r~~~~~~~~a~--------~--------------~~-------   65 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYP-Q-----YKVTVAGRNIDHVRAFAE--------K--------------YE-------   65 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTT-T-----CEEEEEESCHHHHHHHHH--------H--------------HT-------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcCCHHHHHHHHH--------H--------------hC-------
Confidence            37999999999999999999887 7     779999999876543210        0              00       


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                             ..+...++++++++++|+||.++|+...  ++.  ...+++   +..++.+..
T Consensus        66 -----------------------~~~~~~~~~~~~~~~~Divi~at~~~~~--~~~--~~~l~~---g~~vid~~~  111 (144)
T 3oj0_A           66 -----------------------YEYVLINDIDSLIKNNDVIITATSSKTP--IVE--ERSLMP---GKLFIDLGN  111 (144)
T ss_dssp             -----------------------CEEEECSCHHHHHHTCSEEEECSCCSSC--SBC--GGGCCT---TCEEEECCS
T ss_pred             -----------------------CceEeecCHHHHhcCCCEEEEeCCCCCc--Eee--HHHcCC---CCEEEEccC
Confidence                                   0133456788888999999999998731  111  133444   567766643

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=98.20  E-value=1.4e-06  Score=83.26  Aligned_cols=95  Identities=22%  Similarity=0.371  Sum_probs=68.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|.||..+|..+... |     ++|..|+|+++..+.                          +.       
T Consensus       137 gktvGIiGlG~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~~--------------------------~~-------  177 (324)
T 3evt_A          137 GQQLLIYGTGQIGQSLAAKASAL-G-----MHVIGVNTTGHPADH--------------------------FH-------  177 (324)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSCCCCTT--------------------------CS-------
T ss_pred             CCeEEEECcCHHHHHHHHHHHhC-C-----CEEEEECCCcchhHh--------------------------Hh-------
Confidence            37999999999999999999887 8     999999998753221                          00       


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                              ......++++.++.||+|++++|.. .+..++ ++....+++   ++++|.++.|=
T Consensus       178 ------------------------~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~---gailIN~aRG~  230 (324)
T 3evt_A          178 ------------------------ETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQ---QPMLINIGRGP  230 (324)
T ss_dssp             ------------------------EEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCS---CCEEEECSCGG
T ss_pred             ------------------------hccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCC---CCEEEEcCCCh
Confidence                                    1122356778889999999999953 444443 334445666   78999988775


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ...
T Consensus       231 ~vd  233 (324)
T 3evt_A          231 AVD  233 (324)
T ss_dssp             GBC
T ss_pred             hhh
Confidence            443

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.18  E-value=7.3e-06  Score=78.25  Aligned_cols=41  Identities=17%  Similarity=0.166  Sum_probs=34.4

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+|||+|||+|.||+++|..|+.. |.+   .+|.++|+++++++
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~-~~~---~~l~l~D~~~~k~~   44 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQ-GIT---DELVVIDVNKEKAM   44 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-CCC---ceEEEEecchHHHH
Confidence            468999999999999999999998 721   28999999876553

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=98.18  E-value=9.7e-06  Score=77.02  Aligned_cols=40  Identities=23%  Similarity=0.232  Sum_probs=33.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .|||+|||+|++|++++..|+.. +.+   .++.++|+++++++
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~-~~~---~el~L~Di~~~~~~   44 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQ-GIA---EEFVIVDVVKDRTK   44 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHcC-CCC---CEEEEEeCCchHHH
Confidence            37999999999999999999988 621   28999999876553

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=98.17  E-value=1.4e-06  Score=88.34  Aligned_cols=96  Identities=20%  Similarity=0.237  Sum_probs=72.0

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ..++|+|||.|.||.++|..|... |     ++|+.|+++.+. ++.                          ...    
T Consensus       141 ~g~~vgIIG~G~IG~~vA~~l~~~-G-----~~V~~~d~~~~~-~~a--------------------------~~~----  183 (529)
T 1ygy_A          141 FGKTVGVVGLGRIGQLVAQRIAAF-G-----AYVVAYDPYVSP-ARA--------------------------AQL----  183 (529)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECTTSCH-HHH--------------------------HHH----
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhC-C-----CEEEEECCCCCh-hHH--------------------------Hhc----
Confidence            347999999999999999999887 8     899999988632 110                          000    


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHH-HHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE-ISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~~-i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                               .+... ++++++..||+|++++|.. .+..++.+ +.+.+++   +++++++++|
T Consensus       184 -------------------------g~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~---g~ilin~arg  234 (529)
T 1ygy_A          184 -------------------------GIELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKP---GVIIVNAARG  234 (529)
T ss_dssp             -------------------------TCEEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCT---TEEEEECSCT
T ss_pred             -------------------------CcEEc-CHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCC---CCEEEECCCC
Confidence                                     12222 6788889999999999987 77777755 5566776   7889999887


Q ss_pred             Cccc
Q 019978          200 VEAE  203 (333)
Q Consensus       200 i~~~  203 (333)
                      -...
T Consensus       235 ~iv~  238 (529)
T 1ygy_A          235 GLVD  238 (529)
T ss_dssp             TSBC
T ss_pred             chhh
Confidence            5544

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=98.17  E-value=3.4e-06  Score=80.00  Aligned_cols=92  Identities=16%  Similarity=0.195  Sum_probs=65.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|.||..+|..+... |     ++|+.|+|+++... .                          ..      
T Consensus       142 g~~vgIIG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~~-~--------------------------~~------  182 (313)
T 2ekl_A          142 GKTIGIVGFGRIGTKVGIIANAM-G-----MKVLAYDILDIREK-A--------------------------EK------  182 (313)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHT-T-----CEEEEECSSCCHHH-H--------------------------HH------
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEECCCcchhH-H--------------------------Hh------
Confidence            47999999999999999999887 8     89999999875321 0                          00      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~-~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                         .                    .+.. .++++.+..+|+|++++|... +..++ +.....+++   ++++|+++.|=
T Consensus       183 ---~--------------------g~~~-~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~---ga~lIn~arg~  235 (313)
T 2ekl_A          183 ---I--------------------NAKA-VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKD---NVIIVNTSRAV  235 (313)
T ss_dssp             ---T--------------------TCEE-CCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCT---TEEEEESSCGG
T ss_pred             ---c--------------------Ccee-cCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCC---CCEEEECCCCc
Confidence               0                    1222 367788889999999999643 43333 333344565   67888887763

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=98.15  E-value=2.2e-06  Score=81.49  Aligned_cols=92  Identities=16%  Similarity=0.167  Sum_probs=67.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEec-CCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR-PGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r-~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      -++|+|||.|.||..+|..+... |     ++|+.|++ +++.. ..                          ...    
T Consensus       146 g~~vgIIG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~~-~~--------------------------~~~----  188 (320)
T 1gdh_A          146 NKTLGIYGFGSIGQALAKRAQGF-D-----MDIDYFDTHRASSS-DE--------------------------ASY----  188 (320)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSCCCHH-HH--------------------------HHH----
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCcChh-hh--------------------------hhc----
Confidence            47999999999999999999877 7     89999999 77531 00                          000    


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                               .+...+++++.+..+|+|++++|.. .+..++ +...+.+++   ++++|+++.|
T Consensus       189 -------------------------g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~---gailIn~arg  240 (320)
T 1gdh_A          189 -------------------------QATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQ---GAIVVNTARG  240 (320)
T ss_dssp             -------------------------TCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCT---TEEEEECSCG
T ss_pred             -------------------------CcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCC---CcEEEECCCC
Confidence                                     1233346888889999999999964 355444 334455666   7888888776

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=98.15  E-value=2.7e-06  Score=80.40  Aligned_cols=90  Identities=18%  Similarity=0.304  Sum_probs=67.0

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .-++|+|||.|.||..+|..+... |     ++|..|+|+++  +.                            +     
T Consensus       123 ~g~~vgIIG~G~IG~~~A~~l~~~-G-----~~V~~~dr~~~--~~----------------------------~-----  161 (303)
T 1qp8_A          123 QGEKVAVLGLGEIGTRVGKILAAL-G-----AQVRGFSRTPK--EG----------------------------P-----  161 (303)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHT-T-----CEEEEECSSCC--CS----------------------------S-----
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEECCCcc--cc----------------------------C-----
Confidence            347999999999999999999887 8     89999998864  10                            0     


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~-~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                                .....++++.+..+|+|++++|.. .+..++. +....+++   ++++|.++.|
T Consensus       162 --------------------------~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~---gailin~srg  212 (303)
T 1qp8_A          162 --------------------------WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAE---DAVFVNVGRA  212 (303)
T ss_dssp             --------------------------SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCT---TCEEEECSCG
T ss_pred             --------------------------cccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCC---CCEEEECCCC
Confidence                                      001135667889999999999976 4555553 45556676   7889888776


Q ss_pred             Cc
Q 019978          200 VE  201 (333)
Q Consensus       200 i~  201 (333)
                      =.
T Consensus       213 ~~  214 (303)
T 1qp8_A          213 EV  214 (303)
T ss_dssp             GG
T ss_pred             cc
Confidence            33

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=98.14  E-value=3.5e-06  Score=81.13  Aligned_cols=95  Identities=19%  Similarity=0.178  Sum_probs=68.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|.||..+|..+..- |     .+|..|+|++...+.                          ..       
T Consensus       173 gktvGIIGlG~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~~--------------------------~~-------  213 (345)
T 4g2n_A          173 GRRLGIFGMGRIGRAIATRARGF-G-----LAIHYHNRTRLSHAL--------------------------EE-------  213 (345)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHTT-T-----CEEEEECSSCCCHHH--------------------------HT-------
T ss_pred             CCEEEEEEeChhHHHHHHHHHHC-C-----CEEEEECCCCcchhh--------------------------hc-------
Confidence            37999999999999999999877 7     899999998643210                          00       


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                              .....+++++.++.+|+|++++|.. .+..++ ++....+++   ++++|.++.|=
T Consensus       214 ------------------------g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~---gailIN~aRG~  266 (345)
T 4g2n_A          214 ------------------------GAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPE---GAVVINISRGD  266 (345)
T ss_dssp             ------------------------TCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCT---TEEEEECSCGG
T ss_pred             ------------------------CCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCC---CcEEEECCCCc
Confidence                                    1223357888999999999999953 344333 334445566   78899988775


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ...
T Consensus       267 ~vd  269 (345)
T 4g2n_A          267 LIN  269 (345)
T ss_dssp             GBC
T ss_pred             hhC
Confidence            443

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=98.14  E-value=3.2e-06  Score=81.39  Aligned_cols=98  Identities=12%  Similarity=0.101  Sum_probs=69.7

Q ss_pred             CCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        40 ~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      +-.-++|+|||.|.||..+|..+... |     .+|..|+++.+....           .                ..  
T Consensus       165 ~l~g~tvGIIG~G~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~~~-----------~----------------~~--  209 (347)
T 1mx3_A          165 RIRGETLGIIGLGRVGQAVALRAKAF-G-----FNVLFYDPYLSDGVE-----------R----------------AL--  209 (347)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECTTSCTTHH-----------H----------------HH--
T ss_pred             CCCCCEEEEEeECHHHHHHHHHHHHC-C-----CEEEEECCCcchhhH-----------h----------------hc--
Confidence            34458999999999999999999887 8     899999987642100           0                00  


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEee
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLA  197 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~  197 (333)
                                                 .+....++++.+..+|+|++++|.. .++.++ ++....+++   ++++|+++
T Consensus       210 ---------------------------g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~---gailIN~a  259 (347)
T 1mx3_A          210 ---------------------------GLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQ---GAFLVNTA  259 (347)
T ss_dssp             ---------------------------TCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCT---TEEEEECS
T ss_pred             ---------------------------CCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCC---CCEEEECC
Confidence                                       1223346788889999999999974 444444 344455666   78889888


Q ss_pred             ecCcc
Q 019978          198 KGVEA  202 (333)
Q Consensus       198 kGi~~  202 (333)
                      .|=..
T Consensus       260 rg~~v  264 (347)
T 1mx3_A          260 RGGLV  264 (347)
T ss_dssp             CTTSB
T ss_pred             CChHH
Confidence            77443

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=98.13  E-value=3.3e-06  Score=82.67  Aligned_cols=97  Identities=21%  Similarity=0.201  Sum_probs=69.3

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .-++|+|||.|.||..+|..+... |     ++|..|+|+++..+..                          ..     
T Consensus       190 ~gktvGIIGlG~IG~~vA~~l~a~-G-----~~V~~~d~~~~~~~~~--------------------------~~-----  232 (393)
T 2nac_A          190 EAMHVGTVAAGRIGLAVLRRLAPF-D-----VHLHYTDRHRLPESVE--------------------------KE-----  232 (393)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGG-T-----CEEEEECSSCCCHHHH--------------------------HH-----
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhC-C-----CEEEEEcCCccchhhH--------------------------hh-----
Confidence            347999999999999999999877 8     8999999986432210                          00     


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                          +                    .+....++++.+..+|+|++++|.. .++.++ ++....+++   ++++|+++.|
T Consensus       233 ----~--------------------G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~---gailIN~aRG  285 (393)
T 2nac_A          233 ----L--------------------NLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR---GAYIVNTARG  285 (393)
T ss_dssp             ----H--------------------TCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCT---TEEEEECSCG
T ss_pred             ----c--------------------CceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCC---CCEEEECCCc
Confidence                0                    1233356788899999999999954 444454 344455666   7889988877


Q ss_pred             Ccc
Q 019978          200 VEA  202 (333)
Q Consensus       200 i~~  202 (333)
                      =..
T Consensus       286 ~~v  288 (393)
T 2nac_A          286 KLC  288 (393)
T ss_dssp             GGB
T ss_pred             hHh
Confidence            433

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=98.12  E-value=9.5e-06  Score=77.62  Aligned_cols=107  Identities=8%  Similarity=-0.041  Sum_probs=71.1

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ..+||+|||+|.||+++|..++.. |.+   .+|.++|+++++++...       ..     |+.   ...+ .      
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~-g~~---~ev~L~Di~~~~~~g~a-------~D-----L~~---~~~~-~------   73 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMK-DLA---DEVALVDVMEDKLKGEM-------MD-----LEH---GSLF-L------   73 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHH-CCC---SEEEEECSCHHHHHHHH-------HH-----HHH---HGGG-S------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-CCC---CeEEEEECCHHHHHHHH-------HH-----hhh---hhhc-c------
Confidence            458999999999999999999998 722   38999999886543210       00     010   0000 0      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------hhHHHHHHHHHhhhh
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWK  185 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps----------------~~~~~vl~~i~~~l~  185 (333)
                         .                   ...+..++|.++ +++||+||++...                ..++++.+++.++ .
T Consensus        74 ---~-------------------~~~i~~t~d~~~-~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~  129 (330)
T 3ldh_A           74 ---H-------------------TAKIVSGKDYSV-SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-S  129 (330)
T ss_dssp             ---C-------------------CSEEEEESSSCS-CSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-C
T ss_pred             ---c-------------------CCeEEEcCCHHH-hCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-C
Confidence               0                   024667788865 8999999997532                2366777777777 3


Q ss_pred             ccCCCCEEEEeeecCc
Q 019978          186 ERITVPVIISLAKGVE  201 (333)
Q Consensus       186 ~~~~~~~Ivs~~kGi~  201 (333)
                      +   +..++.++|-..
T Consensus       130 P---~a~ilvvtNPvd  142 (330)
T 3ldh_A          130 P---DCLKELHPELGT  142 (330)
T ss_dssp             T---TCEEEECSSSHH
T ss_pred             C---CceEEeCCCccH
Confidence            4   677777776543

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.12  E-value=1e-05  Score=67.69  Aligned_cols=75  Identities=21%  Similarity=0.282  Sum_probs=55.3

Q ss_pred             CCceEEEECC----CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchh
Q 019978           42 DPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV  117 (333)
Q Consensus        42 ~~~kI~IIGa----G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~  117 (333)
                      .+.+|+|||+    |.||..++..|.+. |     ++  +|..++.. ++                          ..  
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~-G-----~~--V~~vnp~~-~~--------------------------i~--   55 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLSK-G-----FE--VLPVNPNY-DE--------------------------IE--   55 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHHT-T-----CE--EEEECTTC-SE--------------------------ET--
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHHC-C-----CE--EEEeCCCC-Ce--------------------------EC--
Confidence            3579999999    99999999999988 8     76  45454431 11                          00  


Q ss_pred             hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHh
Q 019978          118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                                                   .+.+..++++..+.+|++++++|+....++++++..
T Consensus        56 -----------------------------G~~~~~s~~el~~~vDlvii~vp~~~v~~v~~~~~~   91 (138)
T 1y81_A           56 -----------------------------GLKCYRSVRELPKDVDVIVFVVPPKVGLQVAKEAVE   91 (138)
T ss_dssp             -----------------------------TEECBSSGGGSCTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred             -----------------------------CeeecCCHHHhCCCCCEEEEEeCHHHHHHHHHHHHH
Confidence                                         233445566656679999999999999999988765

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=98.12  E-value=1.3e-05  Score=76.19  Aligned_cols=34  Identities=18%  Similarity=0.247  Sum_probs=31.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~   82 (333)
                      .+||+|||+|.||+++|..++.. |     + +|++||+++
T Consensus         8 ~~kv~ViGaG~vG~~ia~~l~~~-g-----~~~v~l~D~~~   42 (315)
T 3tl2_A            8 RKKVSVIGAGFTGATTAFLLAQK-E-----LADVVLVDIPQ   42 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEeccc
Confidence            47999999999999999999998 7     7 999999984

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=98.12  E-value=8.8e-06  Score=77.17  Aligned_cols=40  Identities=23%  Similarity=0.248  Sum_probs=33.5

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      .+|||+|||+|++|++++..|+.. |.+   .+|.++|++++++
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~-~~~---~ei~L~Di~~~~~   44 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQ-SIV---DELVIIDLDTEKV   44 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHH-CSC---SEEEEECSCHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCChhHh
Confidence            347999999999999999999988 621   3899999987654

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=98.11  E-value=9.4e-06  Score=77.12  Aligned_cols=39  Identities=10%  Similarity=0.155  Sum_probs=33.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      |||+|||+|.||+++|..|+.. |..   .+|.++|+++++++
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~-~~~---~el~l~D~~~~k~~   39 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQ-DVA---KEVVMVDIKDGMPQ   39 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCS---SEEEEECSSTTHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCchHHHH
Confidence            7999999999999999999998 721   28999999987653

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=98.11  E-value=1.2e-05  Score=76.54  Aligned_cols=41  Identities=24%  Similarity=0.231  Sum_probs=33.7

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ..|||+|||+|++|++++..|+.. +.+   .++.|+|+++++++
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~-~~~---~el~L~Di~~~~~~   48 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQ-GIA---QEIGIVDIFKDKTK   48 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcC-CCC---CEEEEEeCCchHhH
Confidence            348999999999999999999888 621   28999999876543

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.10  E-value=5.4e-06  Score=65.28  Aligned_cols=39  Identities=23%  Similarity=0.296  Sum_probs=33.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +|+|+|+|+|.||..++..|.+. |.    ++|++++|++++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~-g~----~~v~~~~r~~~~~~   43 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTS-SN----YSVTVADHDLAALA   43 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHC-SS----EEEEEEESCHHHHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhC-CC----ceEEEEeCCHHHHH
Confidence            47999999999999999999988 62    78999999886543

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=98.10  E-value=3.4e-06  Score=81.69  Aligned_cols=96  Identities=23%  Similarity=0.249  Sum_probs=68.8

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCee-EEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .-++|+|||.|.||..+|..+... |     .+ |..|+|+++..+..                          ..    
T Consensus       163 ~g~tvgIIG~G~IG~~vA~~l~~~-G-----~~~V~~~d~~~~~~~~~--------------------------~~----  206 (364)
T 2j6i_A          163 EGKTIATIGAGRIGYRVLERLVPF-N-----PKELLYYDYQALPKDAE--------------------------EK----  206 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGG-C-----CSEEEEECSSCCCHHHH--------------------------HH----
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhC-C-----CcEEEEECCCccchhHH--------------------------Hh----
Confidence            347999999999999999999877 8     87 99999987543210                          00    


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeee
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                               ..+....++++.+..+|+|++++|.. .++.++ +.....+++   ++++|+++.
T Consensus       207 -------------------------~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~---ga~lIn~ar  258 (364)
T 2j6i_A          207 -------------------------VGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKK---GAWLVNTAR  258 (364)
T ss_dssp             -------------------------TTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCT---TEEEEECSC
T ss_pred             -------------------------cCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCC---CCEEEECCC
Confidence                                     02333457888889999999999975 444444 334455666   788888887


Q ss_pred             cCc
Q 019978          199 GVE  201 (333)
Q Consensus       199 Gi~  201 (333)
                      |=.
T Consensus       259 G~~  261 (364)
T 2j6i_A          259 GAI  261 (364)
T ss_dssp             GGG
T ss_pred             Cch
Confidence            733

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.09  E-value=4.1e-06  Score=68.21  Aligned_cols=38  Identities=16%  Similarity=0.208  Sum_probs=33.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +++|.|+|+|.+|..++..|.+. |     ++|++++++++.++
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~-g-----~~v~~~d~~~~~~~   43 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRM-G-----HEVLAVDINEEKVN   43 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-T-----CCCEEEESCHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence            35899999999999999999998 8     89999999876543

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=98.08  E-value=1.8e-05  Score=75.34  Aligned_cols=81  Identities=21%  Similarity=0.148  Sum_probs=59.6

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHh-cCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDS-YGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~-~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      .++||+|||+|.||..++..+.+. .+     .++. ++++++++++++..        .                    
T Consensus        12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~-----~~lvav~d~~~~~~~~~~~--------~--------------------   58 (354)
T 3q2i_A           12 RKIRFALVGCGRIANNHFGALEKHADR-----AELIDVCDIDPAALKAAVE--------R--------------------   58 (354)
T ss_dssp             SCEEEEEECCSTTHHHHHHHHHHTTTT-----EEEEEEECSSHHHHHHHHH--------H--------------------
T ss_pred             CcceEEEEcCcHHHHHHHHHHHhCCCC-----eEEEEEEcCCHHHHHHHHH--------H--------------------
Confidence            568999999999999999988765 13     6754 88998865432110        0                    


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHH
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS  181 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~  181 (333)
                            +                    .+.+.+|+++.+.  +.|+|++|+|+....+++....
T Consensus        59 ------~--------------------~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al   96 (354)
T 3q2i_A           59 ------T--------------------GARGHASLTDMLAQTDADIVILTTPSGLHPTQSIECS   96 (354)
T ss_dssp             ------H--------------------CCEEESCHHHHHHHCCCSEEEECSCGGGHHHHHHHHH
T ss_pred             ------c--------------------CCceeCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHH
Confidence                  0                    2456688888876  7999999999987777766554

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=98.07  E-value=5e-06  Score=78.58  Aligned_cols=91  Identities=23%  Similarity=0.310  Sum_probs=65.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|.||..+|..+... |     ++|..|+|+++. +..                          ..      
T Consensus       142 g~~vgIiG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~-~~~--------------------------~~------  182 (307)
T 1wwk_A          142 GKTIGIIGFGRIGYQVAKIANAL-G-----MNILLYDPYPNE-ERA--------------------------KE------  182 (307)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCH-HHH--------------------------HH------
T ss_pred             CceEEEEccCHHHHHHHHHHHHC-C-----CEEEEECCCCCh-hhH--------------------------hh------
Confidence            47999999999999999999887 8     899999998753 110                          00      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHH-HHHHhhhhccCCCCEEEEeeec
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~-~~~vl-~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                         +                    .+.. .++++.+..+|+|++++|... +..++ ++....+++   ++++|.++.|
T Consensus       183 ---~--------------------g~~~-~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~---ga~lin~arg  234 (307)
T 1wwk_A          183 ---V--------------------NGKF-VDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKK---TAILINTSRG  234 (307)
T ss_dssp             ---T--------------------TCEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCT---TCEEEECSCG
T ss_pred             ---c--------------------Cccc-cCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCC---CeEEEECCCC
Confidence               0                    1222 367788889999999999643 44444 334445666   7888888776

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=98.07  E-value=1.7e-06  Score=82.54  Aligned_cols=95  Identities=19%  Similarity=0.298  Sum_probs=68.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|.||..+|..+... |     ++|+.|+|+++..+.                          ..       
T Consensus       140 g~tvGIIGlG~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~~--------------------------~~-------  180 (324)
T 3hg7_A          140 GRTLLILGTGSIGQHIAHTGKHF-G-----MKVLGVSRSGRERAG--------------------------FD-------  180 (324)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCCCTT--------------------------CS-------
T ss_pred             cceEEEEEECHHHHHHHHHHHhC-C-----CEEEEEcCChHHhhh--------------------------hh-------
Confidence            37999999999999999999887 8     899999998743210                          00       


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                              ......++++++..+|+|++++|.. .++.++ ++....+++   ++++|.++.|=
T Consensus       181 ------------------------~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~---gailIN~aRG~  233 (324)
T 3hg7_A          181 ------------------------QVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKP---GAILFNVGRGN  233 (324)
T ss_dssp             ------------------------EEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCT---TCEEEECSCGG
T ss_pred             ------------------------cccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCC---CcEEEECCCch
Confidence                                    1112357888899999999999954 344433 223344566   78999998775


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ...
T Consensus       234 ~vd  236 (324)
T 3hg7_A          234 AIN  236 (324)
T ss_dssp             GBC
T ss_pred             hhC
Confidence            543

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=98.06  E-value=1.7e-05  Score=75.14  Aligned_cols=82  Identities=21%  Similarity=0.213  Sum_probs=60.3

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .++||+|||+|.||..++..|.+. .    +.+|+ +++++++.++++.         +                     
T Consensus         3 ~~~rvgiiG~G~~g~~~~~~l~~~-~----~~~l~av~d~~~~~~~~~a---------~---------------------   47 (344)
T 3euw_A            3 LTLRIALFGAGRIGHVHAANIAAN-P----DLELVVIADPFIEGAQRLA---------E---------------------   47 (344)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHC-T----TEEEEEEECSSHHHHHHHH---------H---------------------
T ss_pred             CceEEEEECCcHHHHHHHHHHHhC-C----CcEEEEEECCCHHHHHHHH---------H---------------------
Confidence            358999999999999999998875 3    26765 7888876543210         0                     


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHh
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                          .+                    .+.+.+|+++.+.  ++|+|++|+|+....+++.....
T Consensus        48 ----~~--------------------g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~   87 (344)
T 3euw_A           48 ----AN--------------------GAEAVASPDEVFARDDIDGIVIGSPTSTHVDLITRAVE   87 (344)
T ss_dssp             ----TT--------------------TCEEESSHHHHTTCSCCCEEEECSCGGGHHHHHHHHHH
T ss_pred             ----Hc--------------------CCceeCCHHHHhcCCCCCEEEEeCCchhhHHHHHHHHH
Confidence                00                    2445688888887  79999999999987777766543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.06  E-value=9.6e-06  Score=69.79  Aligned_cols=39  Identities=15%  Similarity=0.163  Sum_probs=33.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .++|.|+|+|.+|..++..|.+..|     ++|+++++++++++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g-----~~V~vid~~~~~~~   77 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYG-----KISLGIEIREEAAQ   77 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHC-----SCEEEEESCHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccC-----CeEEEEECCHHHHH
Confidence            3689999999999999999976414     89999999987654

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=98.05  E-value=1.1e-05  Score=73.93  Aligned_cols=109  Identities=13%  Similarity=0.192  Sum_probs=70.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ||||+|+|+|.||..++..+.+. +     +++. +++++++.                            .        
T Consensus         3 MmkI~ViGaGrMG~~i~~~l~~~-~-----~eLva~~d~~~~~----------------------------~--------   40 (243)
T 3qy9_A            3 SMKILLIGYGAMNQRVARLAEEK-G-----HEIVGVIENTPKA----------------------------T--------   40 (243)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEECSSCC--------------------------------------
T ss_pred             ceEEEEECcCHHHHHHHHHHHhC-C-----CEEEEEEecCccc----------------------------c--------
Confidence            58999999999999999999988 6     5443 35555421                            0        


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                              ..+.+++|+++.+ ++|++|-++.+....+.++     +..   +..+|+.+.|+.
T Consensus        41 ------------------------~gv~v~~dl~~l~-~~DVvIDft~p~a~~~~~~-----l~~---g~~vVigTTG~s   87 (243)
T 3qy9_A           41 ------------------------TPYQQYQHIADVK-GADVAIDFSNPNLLFPLLD-----EDF---HLPLVVATTGEK   87 (243)
T ss_dssp             ------------------------CCSCBCSCTTTCT-TCSEEEECSCHHHHHHHHT-----SCC---CCCEEECCCSSH
T ss_pred             ------------------------CCCceeCCHHHHh-CCCEEEEeCChHHHHHHHH-----Hhc---CCceEeCCCCCC
Confidence                                    0233456776666 8999996666655555554     333   556777777886


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH
Q 019978          202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE  239 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e  239 (333)
                      .+.         .+.+.+...    ...++..||+..-
T Consensus        88 ~e~---------~~~l~~aa~----~~~v~~a~N~S~G  112 (243)
T 3qy9_A           88 EKL---------LNKLDELSQ----NMPVFFSANMSYG  112 (243)
T ss_dssp             HHH---------HHHHHHHTT----TSEEEECSSCCHH
T ss_pred             HHH---------HHHHHHHHh----cCCEEEECCccHH
Confidence            541         123444332    2457889999754

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.05  E-value=2.5e-05  Score=70.40  Aligned_cols=81  Identities=23%  Similarity=0.357  Sum_probs=60.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeE-EEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      |||+|||+|.||..++..|.+. |     ++| .+|++++ ..+                                    
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~-g-----~~lv~v~d~~~-~~~------------------------------------   37 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERN-G-----FEIAAILDVRG-EHE------------------------------------   37 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEECSSC-CCT------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHhcC-C-----CEEEEEEecCc-chh------------------------------------
Confidence            6999999999999999999876 6     886 6888874 211                                    


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~-~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                              .  ..+|+++.+ .++|+|++++|+....+++...   +..   ++.+++...+
T Consensus        38 ------------------------~--~~~~~~~l~~~~~DvVv~~~~~~~~~~~~~~~---l~~---G~~vv~~~~~   83 (236)
T 2dc1_A           38 ------------------------K--MVRGIDEFLQREMDVAVEAASQQAVKDYAEKI---LKA---GIDLIVLSTG   83 (236)
T ss_dssp             ------------------------T--EESSHHHHTTSCCSEEEECSCHHHHHHHHHHH---HHT---TCEEEESCGG
T ss_pred             ------------------------h--hcCCHHHHhcCCCCEEEECCCHHHHHHHHHHH---HHC---CCcEEEECcc
Confidence                                    1  235666767 6899999999998777776543   344   5667765544

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.04  E-value=6.6e-06  Score=79.06  Aligned_cols=39  Identities=21%  Similarity=0.332  Sum_probs=32.9

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+.|||.|+|||.+|..++..|++.       ++|++++++.+.++
T Consensus        14 g~~mkilvlGaG~vG~~~~~~L~~~-------~~v~~~~~~~~~~~   52 (365)
T 3abi_A           14 GRHMKVLILGAGNIGRAIAWDLKDE-------FDVYIGDVNNENLE   52 (365)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHTTT-------SEEEEEESCHHHHH
T ss_pred             CCccEEEEECCCHHHHHHHHHHhcC-------CCeEEEEcCHHHHH
Confidence            4568999999999999999999876       79999999886554

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=98.02  E-value=3.7e-06  Score=79.69  Aligned_cols=88  Identities=23%  Similarity=0.253  Sum_probs=66.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||+|.||..+|..+... |     ++|..|+|+++..+                                    
T Consensus       144 g~~vgIIG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~~------------------------------------  181 (311)
T 2cuk_A          144 GLTLGLVGMGRIGQAVAKRALAF-G-----MRVVYHARTPKPLP------------------------------------  181 (311)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCSSS------------------------------------
T ss_pred             CCEEEEEEECHHHHHHHHHHHHC-C-----CEEEEECCCCcccc------------------------------------
Confidence            47999999999999999999887 8     89999999874210                                    


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~-~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                               + ...++++.+..+|+|++++|.. .+..++. +....+++   ++++|.++.|-
T Consensus       182 -------------------------~-~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~---ga~lin~srg~  232 (311)
T 2cuk_A          182 -------------------------Y-PFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKR---GAILLNTARGA  232 (311)
T ss_dssp             -------------------------S-CBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCT---TCEEEECSCGG
T ss_pred             -------------------------c-ccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCC---CcEEEECCCCC
Confidence                                     0 0135677888999999999986 4555553 34445666   78888887763


Q ss_pred             c
Q 019978          201 E  201 (333)
Q Consensus       201 ~  201 (333)
                      .
T Consensus       233 ~  233 (311)
T 2cuk_A          233 L  233 (311)
T ss_dssp             G
T ss_pred             c
Confidence            3

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=98.02  E-value=3.3e-06  Score=81.51  Aligned_cols=96  Identities=15%  Similarity=0.189  Sum_probs=68.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|.||..+|..+... |     ++|..|+|+... +.                          ...      
T Consensus       160 g~tvGIIGlG~IG~~vA~~l~~~-G-----~~V~~~d~~~~~-~~--------------------------~~~------  200 (352)
T 3gg9_A          160 GQTLGIFGYGKIGQLVAGYGRAF-G-----MNVLVWGRENSK-ER--------------------------ARA------  200 (352)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSHHHH-HH--------------------------HHH------
T ss_pred             CCEEEEEeECHHHHHHHHHHHhC-C-----CEEEEECCCCCH-HH--------------------------HHh------
Confidence            37999999999999999999887 8     899999987521 10                          000      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                             ..+...++++++++.+|+|++++|.. .++.++ ++....+++   ++++|.++.|=
T Consensus       201 -----------------------~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~---gailIN~aRg~  254 (352)
T 3gg9_A          201 -----------------------DGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKP---TALFVNTSRAE  254 (352)
T ss_dssp             -----------------------TTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCT---TCEEEECSCGG
T ss_pred             -----------------------cCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCC---CcEEEECCCch
Confidence                                   02344467889999999999999954 344333 234455666   78999988774


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ...
T Consensus       255 ~vd  257 (352)
T 3gg9_A          255 LVE  257 (352)
T ss_dssp             GBC
T ss_pred             hhc
Confidence            443

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=98.01  E-value=7e-06  Score=80.60  Aligned_cols=93  Identities=16%  Similarity=0.244  Sum_probs=68.2

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .-++|+|||.|.||..+|..+... |     ++|..|+++++..                            ..      
T Consensus       144 ~gktlGiIGlG~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~----------------------------~~------  183 (404)
T 1sc6_A          144 RGKKLGIIGYGHIGTQLGILAESL-G-----MYVYFYDIENKLP----------------------------LG------  183 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCCC----------------------------CT------
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHC-C-----CEEEEEcCCchhc----------------------------cC------
Confidence            347999999999999999999877 8     9999999876310                            00      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                               .+....++++.+..||+|++++|.. .++.++ ++....+++   ++++|.++.|
T Consensus       184 -------------------------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~---ga~lIN~aRg  235 (404)
T 1sc6_A          184 -------------------------NATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKP---GSLLINASRG  235 (404)
T ss_dssp             -------------------------TCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCT---TEEEEECSCS
T ss_pred             -------------------------CceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCC---CeEEEECCCC
Confidence                                     1233457888899999999999975 444444 333445666   7889988877


Q ss_pred             Ccc
Q 019978          200 VEA  202 (333)
Q Consensus       200 i~~  202 (333)
                      -..
T Consensus       236 ~~v  238 (404)
T 1sc6_A          236 TVV  238 (404)
T ss_dssp             SSB
T ss_pred             hHH
Confidence            443

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.00  E-value=2.8e-05  Score=74.24  Aligned_cols=42  Identities=24%  Similarity=0.217  Sum_probs=34.7

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ...+||+|||+|.+|+++|..|+.. |.+   .++.++|+++++++
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~-~~~---~el~l~D~~~~k~~   48 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQ-GIA---QEIGIVDIFKDKTK   48 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSCHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC-CCC---CeEEEEeCChHHHH
Confidence            3458999999999999999999998 721   28999999876553

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=97.99  E-value=6.1e-06  Score=75.66  Aligned_cols=59  Identities=20%  Similarity=0.292  Sum_probs=41.8

Q ss_pred             cccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           19 HHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ..+|-...-=+..+++. +.. -.- +|+|||+|.||.+++..|.+. |     ++|++|+|++++++
T Consensus        95 ~g~ntd~~g~~~~l~~~-~~~-l~~-~v~iiG~G~~g~~~a~~l~~~-g-----~~v~v~~r~~~~~~  153 (263)
T 2d5c_A           95 FGFNTDAPGFLEALKAG-GIP-LKG-PALVLGAGGAGRAVAFALREA-G-----LEVWVWNRTPQRAL  153 (263)
T ss_dssp             EEECCHHHHHHHHHHHT-TCC-CCS-CEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSHHHHH
T ss_pred             EEeCCCHHHHHHHHHHh-CCC-CCC-eEEEECCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence            34454444444455442 222 223 899999999999999999998 8     78999999976543

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=97.97  E-value=1.1e-05  Score=79.51  Aligned_cols=93  Identities=23%  Similarity=0.300  Sum_probs=66.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|.||..+|..+..- |     ++|..|+++++...                            .       
T Consensus       156 gktvGIIGlG~IG~~vA~~l~~~-G-----~~V~~yd~~~~~~~----------------------------~-------  194 (416)
T 3k5p_A          156 GKTLGIVGYGNIGSQVGNLAESL-G-----MTVRYYDTSDKLQY----------------------------G-------  194 (416)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECTTCCCCB----------------------------T-------
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEECCcchhcc----------------------------c-------
Confidence            37999999999999999999877 8     99999998753110                            0       


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                              ......++++.++.||+|++++|.. .++.++ ++....+++   ++++|.++.|-
T Consensus       195 ------------------------~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~---gailIN~aRG~  247 (416)
T 3k5p_A          195 ------------------------NVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKK---GAFLINNARGS  247 (416)
T ss_dssp             ------------------------TBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCT---TEEEEECSCTT
T ss_pred             ------------------------CcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCC---CcEEEECCCCh
Confidence                                    1223467888999999999999974 344443 233344566   78999988775


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ...
T Consensus       248 vvd  250 (416)
T 3k5p_A          248 DVD  250 (416)
T ss_dssp             SBC
T ss_pred             hhh
Confidence            543

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.97  E-value=1.9e-05  Score=73.66  Aligned_cols=94  Identities=7%  Similarity=0.102  Sum_probs=63.9

Q ss_pred             CceEEEECCCHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGaG~mG~a-lA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ++||+|||+|.||.. ++..|.+..+     .++. ++++++++++++..        .              +      
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~-----~~l~av~d~~~~~~~~~a~--------~--------------~------   52 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSER-----FEFVGAFTPNKVKREKICS--------D--------------Y------   52 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSS-----SEEEEEECSCHHHHHHHHH--------H--------------H------
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCC-----eEEEEEECCCHHHHHHHHH--------H--------------c------
Confidence            479999999999996 8888876413     5665 88998876543210        0              0      


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                                ++...+|+++.+.+.|+|++|+|+....+++.....   .   ++.|+ +-|-+
T Consensus        53 --------------------------~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~~~al~---~---gk~vl-~EKP~   99 (308)
T 3uuw_A           53 --------------------------RIMPFDSIESLAKKCDCIFLHSSTETHYEIIKILLN---L---GVHVY-VDKPL   99 (308)
T ss_dssp             --------------------------TCCBCSCHHHHHTTCSEEEECCCGGGHHHHHHHHHH---T---TCEEE-ECSSS
T ss_pred             --------------------------CCCCcCCHHHHHhcCCEEEEeCCcHhHHHHHHHHHH---C---CCcEE-EcCCC
Confidence                                      111257888888899999999999988777766543   2   44443 55544


Q ss_pred             cc
Q 019978          201 EA  202 (333)
Q Consensus       201 ~~  202 (333)
                      ..
T Consensus       100 ~~  101 (308)
T 3uuw_A          100 AS  101 (308)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.96  E-value=3.5e-05  Score=72.60  Aligned_cols=80  Identities=16%  Similarity=0.221  Sum_probs=58.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ++||+|||+|.||..++..|.+..+     .+|. ++++++++++++.         +                      
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~~~~-----~~l~av~d~~~~~~~~~~---------~----------------------   46 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSGNAD-----ARLVAVADAFPAAAEAIA---------G----------------------   46 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTT-----EEEEEEECSSHHHHHHHH---------H----------------------
T ss_pred             ceEEEEECCCHHHHHHHHHHhhCCC-----cEEEEEECCCHHHHHHHH---------H----------------------
Confidence            4799999999999999999987513     6765 7888876543211         0                      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHh
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                         .+                    .+. .+|+++.+.  +.|+|++|+|+....+++.....
T Consensus        47 ---~~--------------------~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~   85 (331)
T 4hkt_A           47 ---AY--------------------GCE-VRTIDAIEAAADIDAVVICTPTDTHADLIERFAR   85 (331)
T ss_dssp             ---HT--------------------TCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHH
T ss_pred             ---Hh--------------------CCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHHHHHHH
Confidence               00                    233 577888776  78999999999887777766543

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=97.96  E-value=1.1e-05  Score=77.32  Aligned_cols=93  Identities=14%  Similarity=0.058  Sum_probs=67.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|.||..+|..+... |     ++|..|+++.+.. ..                          ..      
T Consensus       165 g~tvgIIGlG~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~-~~--------------------------~~------  205 (335)
T 2g76_A          165 GKTLGILGLGRIGREVATRMQSF-G-----MKTIGYDPIISPE-VS--------------------------AS------  205 (335)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSSCHH-HH--------------------------HH------
T ss_pred             cCEEEEEeECHHHHHHHHHHHHC-C-----CEEEEECCCcchh-hh--------------------------hh------
Confidence            47999999999999999999877 7     8999999987531 00                          00      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                         .                    .+.. .++++.++.+|+|++++|.. .++.++ ++....+++   ++++|.++.|=
T Consensus       206 ---~--------------------g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~---gailIN~arg~  258 (335)
T 2g76_A          206 ---F--------------------GVQQ-LPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKK---GVRVVNCARGG  258 (335)
T ss_dssp             ---T--------------------TCEE-CCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCT---TEEEEECSCTT
T ss_pred             ---c--------------------Ccee-CCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCC---CcEEEECCCcc
Confidence               0                    1222 36788899999999999976 355555 345555666   78888887763


Q ss_pred             c
Q 019978          201 E  201 (333)
Q Consensus       201 ~  201 (333)
                      .
T Consensus       259 v  259 (335)
T 2g76_A          259 I  259 (335)
T ss_dssp             S
T ss_pred             c
Confidence            3

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=97.96  E-value=6.4e-06  Score=78.73  Aligned_cols=96  Identities=16%  Similarity=0.235  Sum_probs=67.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|.||..+|..+... |     ++|..|+|++...+..                          ...     
T Consensus       145 g~tvGIIG~G~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~~~~--------------------------~~~-----  187 (330)
T 4e5n_A          145 NATVGFLGMGAIGLAMADRLQGW-G-----ATLQYHEAKALDTQTE--------------------------QRL-----  187 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHTTTS-C-----CEEEEECSSCCCHHHH--------------------------HHH-----
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEECCCCCcHhHH--------------------------Hhc-----
Confidence            37999999999999999999876 7     8999999987432110                          000     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                              .+.. .++++.+..+|+|++++|.. .+..++ ++....+++   ++++|.++.|=
T Consensus       188 ------------------------g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~---gailIN~arg~  239 (330)
T 4e5n_A          188 ------------------------GLRQ-VACSELFASSDFILLALPLNADTLHLVNAELLALVRP---GALLVNPCRGS  239 (330)
T ss_dssp             ------------------------TEEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCT---TEEEEECSCGG
T ss_pred             ------------------------Ccee-CCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCC---CcEEEECCCCc
Confidence                                    1222 36888899999999999954 343333 344455666   78899988774


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ...
T Consensus       240 ~vd  242 (330)
T 4e5n_A          240 VVD  242 (330)
T ss_dssp             GBC
T ss_pred             hhC
Confidence            443

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=97.95  E-value=1.6e-05  Score=66.93  Aligned_cols=75  Identities=19%  Similarity=0.028  Sum_probs=54.4

Q ss_pred             CceEEEECC----CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch-hhhhhhhHHHHHhhhhhHHHHhhhcccccchh
Q 019978           43 PLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV-DRATAEHLFEVINSREDVLRRLIRRCAYLKYV  117 (333)
Q Consensus        43 ~~kI~IIGa----G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~-~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~  117 (333)
                      +.+|+|||+    |.||..++..|.+. |     ++  +|..+++.. ++                          ..  
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~-G-----~~--v~~vnp~~~g~~--------------------------i~--   56 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQ-G-----YH--VIPVSPKVAGKT--------------------------LL--   56 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHH-T-----CC--EEEECSSSTTSE--------------------------ET--
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHC-C-----CE--EEEeCCcccccc--------------------------cC--
Confidence            458999999    89999999999998 8     76  455555321 10                          00  


Q ss_pred             hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHh
Q 019978          118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                                                   .+.+..++++..+..|++++++|+....++++++..
T Consensus        57 -----------------------------G~~~~~sl~el~~~~Dlvii~vp~~~v~~v~~~~~~   92 (145)
T 2duw_A           57 -----------------------------GQQGYATLADVPEKVDMVDVFRNSEAAWGVAQEAIA   92 (145)
T ss_dssp             -----------------------------TEECCSSTTTCSSCCSEEECCSCSTHHHHHHHHHHH
T ss_pred             -----------------------------CeeccCCHHHcCCCCCEEEEEeCHHHHHHHHHHHHH
Confidence                                         223334454555678999999999999999988776

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=97.93  E-value=2e-05  Score=75.34  Aligned_cols=108  Identities=11%  Similarity=0.086  Sum_probs=69.5

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ...+||+|||+|.||.++|..|+.. |..   .+|.++|+++++++...       +.     |++    ...+..    
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~-~~~---~el~L~Di~~~~~~g~a-------~D-----L~~----~~~~~~----   72 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMK-DLA---DELALVDVIEDKLKGEM-------MD-----LQH----GSLFLK----   72 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHT-TCC---SEEEEECSCHHHHHHHH-------HH-----HHH----TGGGCS----
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC-CCC---ceEEEEeCChHHHHHHH-------Hh-----hhh----hhhccC----
Confidence            4568999999999999999999988 711   28999999876543211       00     010    000000    


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--------------hhHHHHHHHHHhhh
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYW  184 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaV--ps--------------~~~~~vl~~i~~~l  184 (333)
                                              ...+..++|.+ ++++||+||++.  |.              ..+.++.+.+.++.
T Consensus        73 ------------------------~~~i~~~~d~~-~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~  127 (331)
T 4aj2_A           73 ------------------------TPKIVSSKDYS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS  127 (331)
T ss_dssp             ------------------------CCEEEECSSGG-GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             ------------------------CCeEEEcCCHH-HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHC
Confidence                                    01355567776 589999999975  22              13566666777663


Q ss_pred             hccCCCCEEEEeeecCc
Q 019978          185 KERITVPVIISLAKGVE  201 (333)
Q Consensus       185 ~~~~~~~~Ivs~~kGi~  201 (333)
                       +   +..++.++|-..
T Consensus       128 -p---~a~vlvvtNPvd  140 (331)
T 4aj2_A          128 -P---QCKLLIVSNPVD  140 (331)
T ss_dssp             -T---TCEEEECSSSHH
T ss_pred             -C---CeEEEEecChHH
Confidence             3   577887776544

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=97.91  E-value=3.3e-05  Score=69.51  Aligned_cols=96  Identities=15%  Similarity=0.282  Sum_probs=62.8

Q ss_pred             hHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHH--HHHhcCCCCCCee-EEEEecCCcchhhhhhhhHHHHHhhhh
Q 019978           25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAM--LQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSRE  101 (333)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~--La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~  101 (333)
                      +++-+.++++..|...  .+||+|||+|.+|.+++..  +... |     ++ |-++|.+++++.+              
T Consensus        69 v~~L~~~~~~~lg~~~--~~rV~IIGAG~~G~~La~~~~~~~~-g-----~~iVg~~D~dp~k~g~--------------  126 (215)
T 2vt3_A           69 VDYLLSFFRKTLDQDE--MTDVILIGVGNLGTAFLHYNFTKNN-N-----TKISMAFDINESKIGT--------------  126 (215)
T ss_dssp             HHHHHHHHHHHHHHC-----CEEEECCSHHHHHHHHCC------------CCEEEEEESCTTTTTC--------------
T ss_pred             hHHHHHHHHHHhCcCC--CCEEEEEccCHHHHHHHHHHhcccC-C-----cEEEEEEeCCHHHHHh--------------
Confidence            3444555666666543  3699999999999999995  3333 4     55 4578888865421              


Q ss_pred             hHHHHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHH
Q 019978          102 DVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEIS  181 (333)
Q Consensus       102 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~  181 (333)
                                 ...++                             ++...+++++.+++.|++++|+|+....++++.+.
T Consensus       127 -----------~i~gv-----------------------------~V~~~~dl~eli~~~D~ViIAvPs~~~~ei~~~l~  166 (215)
T 2vt3_A          127 -----------EVGGV-----------------------------PVYNLDDLEQHVKDESVAILTVPAVAAQSITDRLV  166 (215)
T ss_dssp             -----------EETTE-----------------------------EEEEGGGHHHHCSSCCEEEECSCHHHHHHHHHHHH
T ss_pred             -----------HhcCC-----------------------------eeechhhHHHHHHhCCEEEEecCchhHHHHHHHHH
Confidence                       11110                             24456778887766699999999998888888876


Q ss_pred             h
Q 019978          182 R  182 (333)
Q Consensus       182 ~  182 (333)
                      .
T Consensus       167 ~  167 (215)
T 2vt3_A          167 A  167 (215)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=97.91  E-value=2.8e-05  Score=73.56  Aligned_cols=39  Identities=18%  Similarity=0.135  Sum_probs=32.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      |||+|||+|++|++++..|+.. +.+   .++.++|+++++++
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~-~~~---~el~L~Di~~~k~~   39 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALL-GVA---REVVLVDLDRKLAQ   39 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCC---SEEEEECSSHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCChhHHH
Confidence            7999999999999999999887 522   48999999976543

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.90  E-value=4.1e-05  Score=72.58  Aligned_cols=81  Identities=17%  Similarity=0.189  Sum_probs=57.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ++||+|||+|.||..++..|.+. .    +.++. ++++++++++++..        .              +.      
T Consensus         2 ~~rvgiIG~G~~g~~~~~~l~~~-~----~~~l~av~d~~~~~~~~~~~--------~--------------~~------   48 (344)
T 3ezy_A            2 SLRIGVIGLGRIGTIHAENLKMI-D----DAILYAISDVREDRLREMKE--------K--------------LG------   48 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHGGGS-T----TEEEEEEECSCHHHHHHHHH--------H--------------HT------
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhC-C----CcEEEEEECCCHHHHHHHHH--------H--------------hC------
Confidence            36999999999999999998764 2    16655 78888765432110        0              00      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHH
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS  181 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~  181 (333)
                                               -..+.+|+++.+.  ++|+|++|+|+....+++....
T Consensus        49 -------------------------~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al   85 (344)
T 3ezy_A           49 -------------------------VEKAYKDPHELIEDPNVDAVLVCSSTNTHSELVIACA   85 (344)
T ss_dssp             -------------------------CSEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHH
T ss_pred             -------------------------CCceeCCHHHHhcCCCCCEEEEcCCCcchHHHHHHHH
Confidence                                     0135678888777  7999999999998777766554

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=97.90  E-value=1.2e-05  Score=76.86  Aligned_cols=91  Identities=19%  Similarity=0.230  Sum_probs=64.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ++|+|||.|.||..+|..+... |     ++|+.|+|+++..  +         .+             .          
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~--~---------~~-------------~----------  186 (333)
T 1j4a_A          147 QVVGVVGTGHIGQVFMQIMEGF-G-----AKVITYDIFRNPE--L---------EK-------------K----------  186 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCHH--H---------HH-------------T----------
T ss_pred             CEEEEEccCHHHHHHHHHHHHC-C-----CEEEEECCCcchh--H---------Hh-------------h----------
Confidence            7999999999999999999887 8     8999999987531  0         00             0          


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecCc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                              +...+++++.+..+|+|++++|.. .++.++ +.....+++   ++++|+++.|=.
T Consensus       187 ------------------------~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~---ga~lIn~arg~~  239 (333)
T 1j4a_A          187 ------------------------GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQ---DVVIVNVSRGPL  239 (333)
T ss_dssp             ------------------------TCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCT---TEEEEECSCGGG
T ss_pred             ------------------------CeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCC---CcEEEECCCCcc
Confidence                                    011236778888999999999964 344444 233345565   688888877633

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=97.90  E-value=5.2e-05  Score=71.88  Aligned_cols=82  Identities=18%  Similarity=0.168  Sum_probs=58.1

Q ss_pred             CceEEEECCCHHHHHHHHHHH-HhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La-~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ++||+|||+|.||..++..+. ...+     .++. ++++++++++++.         +.            + .     
T Consensus         2 ~~rigiIG~G~~g~~~~~~l~~~~~~-----~~l~av~d~~~~~~~~~~---------~~------------~-g-----   49 (344)
T 3mz0_A            2 SLRIGVIGTGAIGKEHINRITNKLSG-----AEIVAVTDVNQEAAQKVV---------EQ------------Y-Q-----   49 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCSS-----EEEEEEECSSHHHHHHHH---------HH------------T-T-----
T ss_pred             eEEEEEECccHHHHHHHHHHHhhCCC-----cEEEEEEcCCHHHHHHHH---------HH------------h-C-----
Confidence            369999999999999999998 4313     6655 7888876543211         00            0 0     


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHHH
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEIS  181 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~--aDlIIlaVps~~~~~vl~~i~  181 (333)
                                               ....+.+|+++.+++  .|+|++|+|+....+++....
T Consensus        50 -------------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al   87 (344)
T 3mz0_A           50 -------------------------LNATVYPNDDSLLADENVDAVLVTSWGPAHESSVLKAI   87 (344)
T ss_dssp             -------------------------CCCEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHH
T ss_pred             -------------------------CCCeeeCCHHHHhcCCCCCEEEECCCchhHHHHHHHHH
Confidence                                     014566888888765  899999999988777776654

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=97.89  E-value=6.2e-05  Score=72.01  Aligned_cols=83  Identities=19%  Similarity=0.173  Sum_probs=58.9

Q ss_pred             CceEEEECCCHHHHHHHHHHH-HhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La-~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ++||+|||+|.||..++..+. ...+     .+|. ++++++++++++..        .             + .     
T Consensus        23 ~~rvgiIG~G~~g~~~~~~l~~~~~~-----~~lvav~d~~~~~~~~~a~--------~-------------~-g-----   70 (357)
T 3ec7_A           23 TLKAGIVGIGMIGSDHLRRLANTVSG-----VEVVAVCDIVAGRAQAALD--------K-------------Y-A-----   70 (357)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCTT-----EEEEEEECSSTTHHHHHHH--------H-------------H-T-----
T ss_pred             eeeEEEECCcHHHHHHHHHHHhhCCC-----cEEEEEEeCCHHHHHHHHH--------H-------------h-C-----
Confidence            479999999999999999998 3313     6755 78999876543210        0             0 0     


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHh
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                                               ......+|+++.+.  +.|+|++|+|.....+++.....
T Consensus        71 -------------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~  109 (357)
T 3ec7_A           71 -------------------------IEAKDYNDYHDLINDKDVEVVIITASNEAHADVAVAALN  109 (357)
T ss_dssp             -------------------------CCCEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHH
T ss_pred             -------------------------CCCeeeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHH
Confidence                                     01345678888776  58999999999887777765543

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=97.87  E-value=1.8e-05  Score=76.10  Aligned_cols=92  Identities=21%  Similarity=0.259  Sum_probs=65.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ++|+|||.|.||..+|..+... |     .+|+.|+|+++..                            ...       
T Consensus       149 ktvgIiGlG~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~----------------------------~~~-------  187 (343)
T 2yq5_A          149 LTVGLIGVGHIGSAVAEIFSAM-G-----AKVIAYDVAYNPE----------------------------FEP-------  187 (343)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCGG----------------------------GTT-------
T ss_pred             CeEEEEecCHHHHHHHHHHhhC-C-----CEEEEECCChhhh----------------------------hhc-------
Confidence            7999999999999999999877 8     8999999987421                            000       


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecCc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                             .+.. .++++++..||+|++++|.. .+..++ ++....+++   ++++|.++.|=.
T Consensus       188 -----------------------~~~~-~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~---gailIN~aRg~~  240 (343)
T 2yq5_A          188 -----------------------FLTY-TDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKK---SAYLINCARGEL  240 (343)
T ss_dssp             -----------------------TCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCT---TCEEEECSCGGG
T ss_pred             -----------------------cccc-cCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCC---CcEEEECCCChh
Confidence                                   1122 27888899999999999953 233222 233344566   789999887744


Q ss_pred             cc
Q 019978          202 AE  203 (333)
Q Consensus       202 ~~  203 (333)
                      ..
T Consensus       241 vd  242 (343)
T 2yq5_A          241 VD  242 (343)
T ss_dssp             BC
T ss_pred             hh
Confidence            43

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.87  E-value=3.4e-05  Score=72.92  Aligned_cols=82  Identities=15%  Similarity=0.085  Sum_probs=58.8

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .++||+|||+|.||..++..|.+. .    +.+|. ++++++++++++..        .             +       
T Consensus         4 ~~~~igiiG~G~~g~~~~~~l~~~-~----~~~l~av~d~~~~~~~~~~~--------~-------------~-------   50 (330)
T 3e9m_A            4 DKIRYGIMSTAQIVPRFVAGLRES-A----QAEVRGIASRRLENAQKMAK--------E-------------L-------   50 (330)
T ss_dssp             CCEEEEECSCCTTHHHHHHHHHHS-S----SEEEEEEBCSSSHHHHHHHH--------H-------------T-------
T ss_pred             CeEEEEEECchHHHHHHHHHHHhC-C----CcEEEEEEeCCHHHHHHHHH--------H-------------c-------
Confidence            357999999999999999999875 2    16665 78888875442110        0             0       


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHh
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                                                .+ .+.+|+++.+.  ++|+|++|+|+....+++.....
T Consensus        51 --------------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~   89 (330)
T 3e9m_A           51 --------------------------AIPVAYGSYEELCKDETIDIIYIPTYNQGHYSAAKLALS   89 (330)
T ss_dssp             --------------------------TCCCCBSSHHHHHHCTTCSEEEECCCGGGHHHHHHHHHH
T ss_pred             --------------------------CCCceeCCHHHHhcCCCCCEEEEcCCCHHHHHHHHHHHH
Confidence                                      11 24577888776  78999999999987777766543

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=97.86  E-value=1.4e-05  Score=76.33  Aligned_cols=91  Identities=18%  Similarity=0.172  Sum_probs=65.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ++|+|||.|.||..+|..+... |     ++|+.|+|+++..                            ...       
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~----------------------------~~~-------  185 (331)
T 1xdw_A          147 CTVGVVGLGRIGRVAAQIFHGM-G-----ATVIGEDVFEIKG----------------------------IED-------  185 (331)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCCS----------------------------CTT-------
T ss_pred             CEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCccHH----------------------------HHh-------
Confidence            7999999999999999999887 8     8999999987421                            000       


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecCc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                             .+. ..++++.+..+|+|++++|.. .+..++ ++....+++   ++++|.++.|=.
T Consensus       186 -----------------------~~~-~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~---ga~lin~srg~~  238 (331)
T 1xdw_A          186 -----------------------YCT-QVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKD---GAILVNCARGQL  238 (331)
T ss_dssp             -----------------------TCE-ECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCT---TEEEEECSCGGG
T ss_pred             -----------------------ccc-cCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCC---CcEEEECCCccc
Confidence                                   011 236778888999999999964 333333 233344666   788888887743


Q ss_pred             c
Q 019978          202 A  202 (333)
Q Consensus       202 ~  202 (333)
                      .
T Consensus       239 v  239 (331)
T 1xdw_A          239 V  239 (331)
T ss_dssp             B
T ss_pred             c
Confidence            3

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.85  E-value=7.1e-05  Score=71.40  Aligned_cols=94  Identities=19%  Similarity=0.161  Sum_probs=63.4

Q ss_pred             CceEEEECCCHHHH-HHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGaG~mG~-alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ++||+|||+|.||. .++..|.+. .    +.+|. ++++++++++++.         +.                    
T Consensus        27 ~~rigiIG~G~~g~~~~~~~l~~~-~----~~~l~av~d~~~~~~~~~a---------~~--------------------   72 (350)
T 3rc1_A           27 PIRVGVIGCADIAWRRALPALEAE-P----LTEVTAIASRRWDRAKRFT---------ER--------------------   72 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHHHC-T----TEEEEEEEESSHHHHHHHH---------HH--------------------
T ss_pred             ceEEEEEcCcHHHHHHHHHHHHhC-C----CeEEEEEEcCCHHHHHHHH---------HH--------------------
Confidence            48999999999998 788888765 2    26765 7898876543211         00                    


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                           +                    .+...+|+++.+.  +.|+|++|+|.....+++.....   .   ++.|+ +-|
T Consensus        73 -----~--------------------g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~---a---Gk~Vl-~EK  120 (350)
T 3rc1_A           73 -----F--------------------GGEPVEGYPALLERDDVDAVYVPLPAVLHAEWIDRALR---A---GKHVL-AEK  120 (350)
T ss_dssp             -----H--------------------CSEEEESHHHHHTCTTCSEEEECCCGGGHHHHHHHHHH---T---TCEEE-EES
T ss_pred             -----c--------------------CCCCcCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHH---C---CCcEE-EeC
Confidence                 0                    2333478888876  58999999999988777766543   2   44443 555


Q ss_pred             cCcc
Q 019978          199 GVEA  202 (333)
Q Consensus       199 Gi~~  202 (333)
                      -+..
T Consensus       121 P~a~  124 (350)
T 3rc1_A          121 PLTT  124 (350)
T ss_dssp             SSCS
T ss_pred             CCCC
Confidence            5443

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=97.85  E-value=1.8e-05  Score=75.54  Aligned_cols=89  Identities=15%  Similarity=0.179  Sum_probs=64.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ++|+|||.|.||..+|..+... |     ++|+.|+|+++..                            ...       
T Consensus       146 ~~vgIiG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~----------------------------~~~-------  184 (333)
T 1dxy_A          146 QTVGVMGTGHIGQVAIKLFKGF-G-----AKVIAYDPYPMKG----------------------------DHP-------  184 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCSS----------------------------CCT-------
T ss_pred             CEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCcchh----------------------------hHh-------
Confidence            7999999999999999999877 8     8999999987421                            000       


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~-~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                             .+.. .++++.+..+|+|++++|... +..++ ++....+++   ++++|.++.|=
T Consensus       185 -----------------------~~~~-~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~---ga~lIn~srg~  236 (333)
T 1dxy_A          185 -----------------------DFDY-VSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKP---GAIVINTARPN  236 (333)
T ss_dssp             -----------------------TCEE-CCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCT---TEEEEECSCTT
T ss_pred             -----------------------cccc-CCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCC---CcEEEECCCCc
Confidence                                   0112 367788899999999999653 44333 334445666   67888887663

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.85  E-value=3.3e-05  Score=72.02  Aligned_cols=92  Identities=15%  Similarity=0.223  Sum_probs=62.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||+|.+|.++|..+... |     .+|++|+|+++..+.+         .+              + +.     
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~-G-----~~V~~~dr~~~~~~~~---------~~--------------~-g~-----  199 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAAL-G-----AKVKVGARESDLLARI---------AE--------------M-GM-----  199 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSHHHHHHH---------HH--------------T-TS-----
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHH---------HH--------------C-CC-----
Confidence            47999999999999999999887 8     8999999987543211         00              0 00     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                              ......++++.+..+|+|++++|...+.+   +....+++   +.++|.++-|
T Consensus       200 ------------------------~~~~~~~l~~~l~~aDvVi~~~p~~~i~~---~~l~~mk~---~~~lin~ar~  246 (293)
T 3d4o_A          200 ------------------------EPFHISKAAQELRDVDVCINTIPALVVTA---NVLAEMPS---HTFVIDLASK  246 (293)
T ss_dssp             ------------------------EEEEGGGHHHHTTTCSEEEECCSSCCBCH---HHHHHSCT---TCEEEECSST
T ss_pred             ------------------------eecChhhHHHHhcCCCEEEECCChHHhCH---HHHHhcCC---CCEEEEecCC
Confidence                                    01112457777889999999999854322   12223455   6788887643

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.84  E-value=6.8e-05  Score=70.72  Aligned_cols=94  Identities=13%  Similarity=0.097  Sum_probs=64.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeE-EEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ++||+|||+|.||..++..+... +    +.+| -++++++++++++.                         .      
T Consensus         5 ~~rigiiG~G~ig~~~~~~l~~~-~----~~~~~av~d~~~~~~~~~a-------------------------~------   48 (329)
T 3evn_A            5 KVRYGVVSTAKVAPRFIEGVRLA-G----NGEVVAVSSRTLESAQAFA-------------------------N------   48 (329)
T ss_dssp             CEEEEEEBCCTTHHHHHHHHHHH-C----SEEEEEEECSCSSTTCC----------------------------------
T ss_pred             ceEEEEEechHHHHHHHHHHHhC-C----CcEEEEEEcCCHHHHHHHH-------------------------H------
Confidence            57999999999999999998876 4    1554 47899887654311                         0      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                         .+                    .+ .+.+|+++.+.  +.|+|++|+|+....+++.....   .   ++.|+ +-|
T Consensus        49 ---~~--------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~---a---Gk~Vl-~EK   98 (329)
T 3evn_A           49 ---KY--------------------HLPKAYDKLEDMLADESIDVIYVATINQDHYKVAKAALL---A---GKHVL-VEK   98 (329)
T ss_dssp             ---CC--------------------CCSCEESCHHHHHTCTTCCEEEECSCGGGHHHHHHHHHH---T---TCEEE-EES
T ss_pred             ---Hc--------------------CCCcccCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHH---C---CCeEE-Ecc
Confidence               00                    12 25678888887  78999999999887777665443   2   44443 455


Q ss_pred             cCcc
Q 019978          199 GVEA  202 (333)
Q Consensus       199 Gi~~  202 (333)
                      -+..
T Consensus        99 P~a~  102 (329)
T 3evn_A           99 PFTL  102 (329)
T ss_dssp             SCCS
T ss_pred             CCcC
Confidence            5443

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.84  E-value=5.1e-05  Score=72.22  Aligned_cols=80  Identities=20%  Similarity=0.393  Sum_probs=56.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ++||+|||+|.||..++..+.+. .    +.+|. ++++++++++++..        .             +        
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~-~----~~~lvav~d~~~~~~~~~~~--------~-------------~--------   50 (354)
T 3db2_A            5 PVGVAAIGLGRWAYVMADAYTKS-E----KLKLVTCYSRTEDKREKFGK--------R-------------Y--------   50 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTC-S----SEEEEEEECSSHHHHHHHHH--------H-------------H--------
T ss_pred             cceEEEEccCHHHHHHHHHHHhC-C----CcEEEEEECCCHHHHHHHHH--------H-------------c--------
Confidence            57999999999999999988765 2    26754 88998865442110        0             0        


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh--cCCCEEEEecCchhHHHHHHHHH
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV--WDADIVINGLPSTETKEVFEEIS  181 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~--~~aDlIIlaVps~~~~~vl~~i~  181 (333)
                                               .+...+|+++.+  .+.|+|++|+|+....+++....
T Consensus        51 -------------------------g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al   87 (354)
T 3db2_A           51 -------------------------NCAGDATMEALLAREDVEMVIITVPNDKHAEVIEQCA   87 (354)
T ss_dssp             -------------------------TCCCCSSHHHHHHCSSCCEEEECSCTTSHHHHHHHHH
T ss_pred             -------------------------CCCCcCCHHHHhcCCCCCEEEEeCChHHHHHHHHHHH
Confidence                                     122347788877  56899999999987777766544

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.83  E-value=2.7e-05  Score=72.80  Aligned_cols=93  Identities=22%  Similarity=0.267  Sum_probs=63.8

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ..++|+|||+|.+|.++|..+... |     .+|++|+|++++.+.+.         +              + +.    
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~-G-----~~V~~~d~~~~~~~~~~---------~--------------~-g~----  201 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAAL-G-----ANVKVGARSSAHLARIT---------E--------------M-GL----  201 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSHHHHHHHH---------H--------------T-TC----
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHH---------H--------------C-CC----
Confidence            347999999999999999999887 8     89999999875432110         0              0 00    


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                               ......++++.++++|+|++++|...+.+   .....+++   +.++|.++-|
T Consensus       202 -------------------------~~~~~~~l~~~l~~aDvVi~~~p~~~i~~---~~~~~mk~---g~~lin~a~g  248 (300)
T 2rir_A          202 -------------------------VPFHTDELKEHVKDIDICINTIPSMILNQ---TVLSSMTP---KTLILDLASR  248 (300)
T ss_dssp             -------------------------EEEEGGGHHHHSTTCSEEEECCSSCCBCH---HHHTTSCT---TCEEEECSST
T ss_pred             -------------------------eEEchhhHHHHhhCCCEEEECCChhhhCH---HHHHhCCC---CCEEEEEeCC
Confidence                                     01112467778889999999999854322   12234555   6788887654

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=97.82  E-value=1.5e-05  Score=77.57  Aligned_cols=91  Identities=23%  Similarity=0.253  Sum_probs=64.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ++|+|||.|.||..+|..+... |     ++|..|++..+...                            .        
T Consensus       120 ktvGIIGlG~IG~~vA~~l~a~-G-----~~V~~~d~~~~~~~----------------------------~--------  157 (381)
T 3oet_A          120 RTIGIVGVGNVGSRLQTRLEAL-G-----IRTLLCDPPRAARG----------------------------D--------  157 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECHHHHHTT----------------------------C--------
T ss_pred             CEEEEEeECHHHHHHHHHHHHC-C-----CEEEEECCChHHhc----------------------------c--------
Confidence            7999999999999999999887 8     99999988532100                            0        


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-----HHHHH-HHHHhhhhccCCCCEEEEee
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-----TKEVF-EEISRYWKERITVPVIISLA  197 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~-----~~~vl-~~i~~~l~~~~~~~~Ivs~~  197 (333)
                                             .. ...+++++++.||+|++++|...     +..++ ++....+++   ++++|.++
T Consensus       158 -----------------------~~-~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~---gailIN~a  210 (381)
T 3oet_A          158 -----------------------EG-DFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKP---GAILINAC  210 (381)
T ss_dssp             -----------------------CS-CBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCT---TEEEEECS
T ss_pred             -----------------------Cc-ccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCC---CcEEEECC
Confidence                                   00 12468888999999999999442     22222 223334565   78899988


Q ss_pred             ecCccc
Q 019978          198 KGVEAE  203 (333)
Q Consensus       198 kGi~~~  203 (333)
                      .|=...
T Consensus       211 RG~vvd  216 (381)
T 3oet_A          211 RGPVVD  216 (381)
T ss_dssp             CGGGBC
T ss_pred             CCcccC
Confidence            775443

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=97.81  E-value=3.1e-05  Score=75.02  Aligned_cols=94  Identities=17%  Similarity=0.159  Sum_probs=65.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ++|+|||.|.||..+|..+..- |     .+|..|+++... +..                          ..       
T Consensus       177 ktvGIIGlG~IG~~vA~~l~~f-G-----~~V~~~d~~~~~-~~~--------------------------~~-------  216 (365)
T 4hy3_A          177 SEIGIVGFGDLGKALRRVLSGF-R-----ARIRVFDPWLPR-SML--------------------------EE-------  216 (365)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTS-C-----CEEEEECSSSCH-HHH--------------------------HH-------
T ss_pred             CEEEEecCCcccHHHHHhhhhC-C-----CEEEEECCCCCH-HHH--------------------------hh-------
Confidence            7999999999999999998766 7     899999987531 100                          00       


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecCc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                            ..+. ..++++.+..+|+|++++|.. .++.++ ++....+++   ++++|.++.|=.
T Consensus       217 ----------------------~g~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~---gailIN~aRG~~  270 (365)
T 4hy3_A          217 ----------------------NGVE-PASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRR---GAAFILLSRADV  270 (365)
T ss_dssp             ----------------------TTCE-ECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCT---TCEEEECSCGGG
T ss_pred             ----------------------cCee-eCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCC---CcEEEECcCCch
Confidence                                  0122 247888899999999999965 454444 344455666   789999887744


Q ss_pred             cc
Q 019978          202 AE  203 (333)
Q Consensus       202 ~~  203 (333)
                      ..
T Consensus       271 vd  272 (365)
T 4hy3_A          271 VD  272 (365)
T ss_dssp             SC
T ss_pred             hC
Confidence            43

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=97.80  E-value=6.9e-05  Score=71.99  Aligned_cols=105  Identities=15%  Similarity=0.183  Sum_probs=67.8

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .+||+|||+ |.+|+++|..++.. |..   .+|.++|+++++++...       ++     |++   ..  ++      
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~-g~~---~evvLiDi~~~k~~g~a-------~D-----L~~---~~--~~------   60 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMM-RLT---PNLCLYDPFAVGLEGVA-------EE-----IRH---CG--FE------   60 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHT-TCC---SCEEEECSCHHHHHHHH-------HH-----HHH---HC--CT------
T ss_pred             CCEEEEECCCChHHHHHHHHHHhc-CCC---CEEEEEeCCchhHHHHH-------Hh-----hhh---Cc--CC------
Confidence            479999998 99999999999887 621   48999999876543210       00     110   00  11      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--------------hhHHHHHHHHHhhhh
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWK  185 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaV--ps--------------~~~~~vl~~i~~~l~  185 (333)
                                             ..++..++|..+++++||+||++.  |.              ..++++.+.+.++.+
T Consensus        61 -----------------------~~~i~~t~d~~~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p  117 (343)
T 3fi9_A           61 -----------------------GLNLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCP  117 (343)
T ss_dssp             -----------------------TCCCEEESCHHHHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             -----------------------CCceEEcCCHHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                                   025777889988899999999975  22              134555556665543


Q ss_pred             ccCCCCE-EEEeeecCc
Q 019978          186 ERITVPV-IISLAKGVE  201 (333)
Q Consensus       186 ~~~~~~~-Ivs~~kGi~  201 (333)
                          +.. ++.++|-+.
T Consensus       118 ----~a~~vlvvsNPvd  130 (343)
T 3fi9_A          118 ----DCKHVIIIFNPAD  130 (343)
T ss_dssp             ----TCCEEEECSSSHH
T ss_pred             ----CcEEEEEecCchH
Confidence                453 666766543

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=97.79  E-value=9e-05  Score=70.09  Aligned_cols=101  Identities=14%  Similarity=0.190  Sum_probs=66.4

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      |||+|+|+ |.+|++++..|+.. |.  . ++|.++|+++  .+.     ..  ..               +.+.     
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~-~~--~-~ev~L~Di~~--~~~-----~a--~d---------------L~~~-----   47 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNS-PL--V-SRLTLYDIAH--TPG-----VA--AD---------------LSHI-----   47 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTC-TT--C-SEEEEEESSS--HHH-----HH--HH---------------HTTS-----
T ss_pred             CEEEEECCCChHHHHHHHHHHhC-CC--C-cEEEEEeCCc--cHH-----HH--HH---------------Hhcc-----
Confidence            79999998 99999999999987 52  1 5899999987  211     00  00               0000     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEE---ecCHHHHhcCCCEEEEecC--c--------------hhHHHHHHHHHhh
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKV---VTNLQEAVWDADIVINGLP--S--------------TETKEVFEEISRY  183 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~---t~d~~ea~~~aDlIIlaVp--s--------------~~~~~vl~~i~~~  183 (333)
                        ..+                  ..++.   ++|.+++++++|+||++..  .              ..+.++++.+.++
T Consensus        48 --~~~------------------~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~  107 (314)
T 1mld_A           48 --ETR------------------ATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH  107 (314)
T ss_dssp             --SSS------------------CEEEEEESGGGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH
T ss_pred             --CcC------------------ceEEEecCCCCHHHHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhh
Confidence              000                  12444   3678888999999999863  2              2366677777766


Q ss_pred             hhccCCCCEEEEeeecCc
Q 019978          184 WKERITVPVIISLAKGVE  201 (333)
Q Consensus       184 l~~~~~~~~Ivs~~kGi~  201 (333)
                      .+    +..++.++|-+.
T Consensus       108 ~p----~a~viv~sNPv~  121 (314)
T 1mld_A          108 CP----DAMICIISNPVN  121 (314)
T ss_dssp             CT----TSEEEECSSCHH
T ss_pred             CC----CeEEEEECCCcc
Confidence            53    567776776544

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.79  E-value=5.8e-05  Score=63.08  Aligned_cols=104  Identities=7%  Similarity=0.025  Sum_probs=65.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC-cchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG-RSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~-~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      ++|.|+|+|.+|..++..|.+. |     ++|+++++++ +.++++..     ....          +   ..-+.   +
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~-g-----~~V~vid~~~~~~~~~~~~-----~~~~----------~---~~~i~---g   56 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQR-G-----QNVTVISNLPEDDIKQLEQ-----RLGD----------N---ADVIP---G   56 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECCCHHHHHHHHH-----HHCT----------T---CEEEE---S
T ss_pred             CcEEEECCCHHHHHHHHHHHHC-C-----CCEEEEECCChHHHHHHHH-----hhcC----------C---CeEEE---c
Confidence            5899999999999999999998 8     9999999974 43322110     0000          0   00000   0


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHH-hcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea-~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                      +                        ..-...++++ ++++|+||++++.+.....+....+.+.+   ...++..+++..
T Consensus        57 d------------------------~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~---~~~ii~~~~~~~  109 (153)
T 1id1_A           57 D------------------------SNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSS---DVKTVLAVSDSK  109 (153)
T ss_dssp             C------------------------TTSHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHHTS---SSCEEEECSSGG
T ss_pred             C------------------------CCCHHHHHHcChhhCCEEEEecCChHHHHHHHHHHHHHCC---CCEEEEEECCHH
Confidence            0                        0000123343 78999999999998877777776666644   455666555443

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=97.79  E-value=0.00015  Score=68.26  Aligned_cols=38  Identities=18%  Similarity=0.003  Sum_probs=32.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      |||+|||+|.+|+++|..|+.+ +..   .++.|+|.+++.+
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~-~~~---~el~L~Di~~~~~   38 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLN-LDV---DEIALVDIAEDLA   38 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-SCC---SEEEEECSSHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCC---CEEEEEeCCCCcc
Confidence            8999999999999999999888 632   3799999987654

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.78  E-value=0.00011  Score=69.43  Aligned_cols=81  Identities=20%  Similarity=0.221  Sum_probs=56.9

Q ss_pred             CCceEEEECCCHHHHHHHHHHH-HhcCCCCCCee-EEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La-~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      .++||+|||+|.||..++..+. ...+     .+ |.++++++++++++.         +                    
T Consensus         7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~-----~~~vav~d~~~~~~~~~a---------~--------------------   52 (346)
T 3cea_A            7 KPLRAAIIGLGRLGERHARHLVNKIQG-----VKLVAACALDSNQLEWAK---------N--------------------   52 (346)
T ss_dssp             CCEEEEEECCSTTHHHHHHHHHHTCSS-----EEEEEEECSCHHHHHHHH---------H--------------------
T ss_pred             CcceEEEEcCCHHHHHHHHHHHhcCCC-----cEEEEEecCCHHHHHHHH---------H--------------------
Confidence            4689999999999999999987 4313     66 457888876543210         0                    


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhc--CCCEEEEecCchhHHHHHHHHH
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS  181 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~  181 (333)
                           .+                    .+ .+.+|.++.+.  ++|+|++|+|+....+++....
T Consensus        53 -----~~--------------------g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al   92 (346)
T 3cea_A           53 -----EL--------------------GVETTYTNYKDMIDTENIDAIFIVAPTPFHPEMTIYAM   92 (346)
T ss_dssp             -----TT--------------------CCSEEESCHHHHHTTSCCSEEEECSCGGGHHHHHHHHH
T ss_pred             -----Hh--------------------CCCcccCCHHHHhcCCCCCEEEEeCChHhHHHHHHHHH
Confidence                 00                    11 34577888776  6899999999987776666543

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=97.76  E-value=1.2e-05  Score=78.42  Aligned_cols=91  Identities=16%  Similarity=0.220  Sum_probs=64.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|.||..+|..|... |     ++|..|+++.+..+                           .        
T Consensus       116 g~tvGIIGlG~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~~---------------------------~--------  154 (380)
T 2o4c_A          116 ERTYGVVGAGQVGGRLVEVLRGL-G-----WKVLVCDPPRQARE---------------------------P--------  154 (380)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECHHHHHHS---------------------------T--------
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHC-C-----CEEEEEcCChhhhc---------------------------c--------
Confidence            47999999999999999999887 8     89999988643100                           0        


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-----HHHHH-HHHHhhhhccCCCCEEEEe
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-----TKEVF-EEISRYWKERITVPVIISL  196 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~-----~~~vl-~~i~~~l~~~~~~~~Ivs~  196 (333)
                                              ... ..++++.+..||+|++++|...     +..++ ++....+++   ++++|.+
T Consensus       155 ------------------------g~~-~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~---gailIN~  206 (380)
T 2o4c_A          155 ------------------------DGE-FVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRP---GTWLVNA  206 (380)
T ss_dssp             ------------------------TSC-CCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCT---TEEEEEC
T ss_pred             ------------------------Ccc-cCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCC---CcEEEEC
Confidence                                    000 1467788889999999998643     33333 234445666   7888888


Q ss_pred             eecCcc
Q 019978          197 AKGVEA  202 (333)
Q Consensus       197 ~kGi~~  202 (333)
                      +.|-..
T Consensus       207 sRG~vv  212 (380)
T 2o4c_A          207 SRGAVV  212 (380)
T ss_dssp             SCGGGB
T ss_pred             CCCccc
Confidence            877443

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.75  E-value=0.00013  Score=68.42  Aligned_cols=80  Identities=16%  Similarity=0.181  Sum_probs=54.3

Q ss_pred             CceEEEECCCHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGaG~mG~a-lA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ++||+|||+|.||.. ++..+.+..+     .++. ++++++++++++..        .              +      
T Consensus         5 ~~~vgiiG~G~~g~~~~~~~l~~~~~-----~~lvav~d~~~~~~~~~~~--------~--------------~------   51 (319)
T 1tlt_A            5 KLRIGVVGLGGIAQKAWLPVLAAASD-----WTLQGAWSPTRAKALPICE--------S--------------W------   51 (319)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHSCSS-----EEEEEEECSSCTTHHHHHH--------H--------------H------
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCC-----eEEEEEECCCHHHHHHHHH--------H--------------c------
Confidence            589999999999996 8888865413     6765 89999876543210        0              0      


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHH
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEIS  181 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~  181 (333)
                                                .+.+.++.++...++|+|++++|+....+++....
T Consensus        52 --------------------------g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~al   86 (319)
T 1tlt_A           52 --------------------------RIPYADSLSSLAASCDAVFVHSSTASHFDVVSTLL   86 (319)
T ss_dssp             --------------------------TCCBCSSHHHHHTTCSEEEECSCTTHHHHHHHHHH
T ss_pred             --------------------------CCCccCcHHHhhcCCCEEEEeCCchhHHHHHHHHH
Confidence                                      11133555554467999999999887766666543

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.75  E-value=9.4e-05  Score=69.44  Aligned_cols=78  Identities=17%  Similarity=0.113  Sum_probs=54.7

Q ss_pred             ceEEEECCCHHHHHH-HHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           44 LRIVGVGAGAWGSVF-TAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        44 ~kI~IIGaG~mG~al-A~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      +||+|||+|.||..+ +..|.+. +     .++. ++++++++++++.         +.             +       
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~-~-----~~~vav~d~~~~~~~~~~---------~~-------------~-------   45 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRAT-G-----GEVVSMMSTSAERGAAYA---------TE-------------N-------   45 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHT-T-----CEEEEEECSCHHHHHHHH---------HH-------------T-------
T ss_pred             CeEEEEcccHHHHHhhhHHhhcC-C-----CeEEEEECCCHHHHHHHH---------HH-------------c-------
Confidence            589999999999998 7777665 6     6654 8899876543211         00             0       


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhc--CCCEEEEecCchhHHHHHHHHH
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS  181 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~  181 (333)
                                               .+ .+.+|.++.+.  ++|+|++++|+....+++....
T Consensus        46 -------------------------g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al   83 (332)
T 2glx_A           46 -------------------------GIGKSVTSVEELVGDPDVDAVYVSTTNELHREQTLAAI   83 (332)
T ss_dssp             -------------------------TCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHHHHHH
T ss_pred             -------------------------CCCcccCCHHHHhcCCCCCEEEEeCChhHhHHHHHHHH
Confidence                                     01 13467777775  5999999999988777776543

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.74  E-value=6.3e-05  Score=70.44  Aligned_cols=92  Identities=15%  Similarity=0.276  Sum_probs=63.3

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCee-EEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .++||+|||+|.||..++..|.+. +    +.+ |.+++++++++++                          +..    
T Consensus         9 ~~~~igiIG~G~~g~~~~~~l~~~-~----~~~~v~v~d~~~~~~~~--------------------------~~~----   53 (315)
T 3c1a_A            9 SPVRLALIGAGRWGKNYIRTIAGL-P----GAALVRLASSNPDNLAL--------------------------VPP----   53 (315)
T ss_dssp             CCEEEEEEECTTTTTTHHHHHHHC-T----TEEEEEEEESCHHHHTT--------------------------CCT----
T ss_pred             CcceEEEECCcHHHHHHHHHHHhC-C----CcEEEEEEeCCHHHHHH--------------------------HHh----
Confidence            458999999999999999999875 3    166 4588988754321                          000    


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                                .+...++.++.++  ++|+|++++|+....+++....   ..   ++.|+ +-|
T Consensus        54 --------------------------~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al---~~---Gk~v~-~eK  100 (315)
T 3c1a_A           54 --------------------------GCVIESDWRSVVSAPEVEAVIIATPPATHAEITLAAI---AS---GKAVL-VEK  100 (315)
T ss_dssp             --------------------------TCEEESSTHHHHTCTTCCEEEEESCGGGHHHHHHHHH---HT---TCEEE-EES
T ss_pred             --------------------------hCcccCCHHHHhhCCCCCEEEEeCChHHHHHHHHHHH---HC---CCcEE-EcC
Confidence                                      1334567777775  7999999999998877777643   33   44444 455


Q ss_pred             cCc
Q 019978          199 GVE  201 (333)
Q Consensus       199 Gi~  201 (333)
                      -+.
T Consensus       101 P~~  103 (315)
T 3c1a_A          101 PLT  103 (315)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            443

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=97.74  E-value=0.00015  Score=60.86  Aligned_cols=81  Identities=15%  Similarity=0.124  Sum_probs=59.0

Q ss_pred             HHHhhccCCCCCceEEEECC----CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHh
Q 019978           32 LRRLMGKAEGDPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRL  107 (333)
Q Consensus        32 ~~~~~~~~~~~~~kI~IIGa----G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~  107 (333)
                      +++++.    .+.+|+|||+    |.+|..++..|.+. |     ++  +|..++.. ++                    
T Consensus        15 l~~ll~----~p~~iaVVGas~~~g~~G~~~~~~l~~~-G-----~~--v~~Vnp~~-~~--------------------   61 (144)
T 2d59_A           15 IREILT----RYKKIALVGASPKPERDANIVMKYLLEH-G-----YD--VYPVNPKY-EE--------------------   61 (144)
T ss_dssp             HHHHHH----HCCEEEEETCCSCTTSHHHHHHHHHHHT-T-----CE--EEEECTTC-SE--------------------
T ss_pred             HHHHHc----CCCEEEEEccCCCCCchHHHHHHHHHHC-C-----CE--EEEECCCC-Ce--------------------
Confidence            455553    2459999999    79999999999988 8     75  67777642 11                    


Q ss_pred             hhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHh
Q 019978          108 IRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       108 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                            +.                               .+.+..++++..+..|++++++|+....++++++..
T Consensus        62 ------i~-------------------------------G~~~y~sl~~l~~~vDlvvi~vp~~~~~~vv~~~~~   99 (144)
T 2d59_A           62 ------VL-------------------------------GRKCYPSVLDIPDKIEVVDLFVKPKLTMEYVEQAIK   99 (144)
T ss_dssp             ------ET-------------------------------TEECBSSGGGCSSCCSEEEECSCHHHHHHHHHHHHH
T ss_pred             ------EC-------------------------------CeeccCCHHHcCCCCCEEEEEeCHHHHHHHHHHHHH
Confidence                  10                               233445555555679999999999999999988775

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.72  E-value=0.00019  Score=66.77  Aligned_cols=125  Identities=12%  Similarity=0.106  Sum_probs=79.4

Q ss_pred             CceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ++||+|+| +|.||..++..+.+..+     +++. +++++.....             +           .....+.  
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~-----~eLv~~~d~~~~~~~-------------G-----------~d~gel~--   55 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPD-----ATLVGALDRTGSPQL-------------G-----------QDAGAFL--   55 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTT-----EEEEEEBCCTTCTTT-------------T-----------SBTTTTT--
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCC-----CEEEEEEEecCcccc-------------c-----------ccHHHHh--
Confidence            58999999 79999999999887622     6654 4677643210             0           0000000  


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                          .+.                  ..+.+++|+++.+.++|+||-++++....+.++....   .   +..+|+.+.|+
T Consensus        56 ----g~~------------------~gv~v~~dl~~ll~~~DVVIDfT~p~a~~~~~~~al~---~---G~~vVigTTG~  107 (272)
T 4f3y_A           56 ----GKQ------------------TGVALTDDIERVCAEADYLIDFTLPEGTLVHLDAALR---H---DVKLVIGTTGF  107 (272)
T ss_dssp             ----TCC------------------CSCBCBCCHHHHHHHCSEEEECSCHHHHHHHHHHHHH---H---TCEEEECCCCC
T ss_pred             ----CCC------------------CCceecCCHHHHhcCCCEEEEcCCHHHHHHHHHHHHH---c---CCCEEEECCCC
Confidence                000                  1455678999988899999999998877766665543   3   56677777787


Q ss_pred             cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH
Q 019978          201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE  239 (333)
Q Consensus       201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e  239 (333)
                      ..+.         -+.|.+...    ...++..||+..-
T Consensus       108 s~~~---------~~~L~~aa~----~~~vv~a~N~s~G  133 (272)
T 4f3y_A          108 SEPQ---------KAQLRAAGE----KIALVFSANMSVG  133 (272)
T ss_dssp             CHHH---------HHHHHHHTT----TSEEEECSCCCHH
T ss_pred             CHHH---------HHHHHHHhc----cCCEEEECCCCHH
Confidence            6531         123444332    1347889998753

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=97.68  E-value=0.00014  Score=72.72  Aligned_cols=81  Identities=20%  Similarity=0.248  Sum_probs=49.9

Q ss_pred             ceEEEECCCHHHHHH--HHHHHHhcCCCCC-CeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           44 LRIVGVGAGAWGSVF--TAMLQDSYGYLRD-KVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        44 ~kI~IIGaG~mG~al--A~~La~~~G~~~~-~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      |||+|||+|+.|.+.  ...++.. ..+.. ..+|.|+|.++++++....     .       +++.      .+..   
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~-~~l~~~~~ei~L~Di~~~rl~~~~~-----~-------~~~~------~~~~---   58 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQT-DELSREDTHIYLMDVHERRLNASYI-----L-------ARKY------VEEL---   58 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTC-TTTCSTTCEEEEECSCHHHHHHHHH-----H-------HHHH------HHHH---
T ss_pred             CEEEEECCCchhhHHHHHHHHHhh-HhcCCCCCEEEEECCCHHHHHHHHH-----H-------HHHH------HHHc---
Confidence            799999999987653  3334433 22211 1479999999876543110     0       1110      0100   


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL  168 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaV  168 (333)
                          ..+                  ..+..++|.++|+++||+||+++
T Consensus        59 ----~~~------------------~~i~~t~d~~eAl~gAD~Vi~~~   84 (477)
T 3u95_A           59 ----NSP------------------VKVVKTESLDEAIEGADFIINTA   84 (477)
T ss_dssp             ----TCC------------------CEEEEESCHHHHHTTCSEEEECC
T ss_pred             ----CCC------------------eEEEEeCCHHHHhCCCCEEEECc
Confidence                000                  25788999999999999999986

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.68  E-value=5.6e-05  Score=72.73  Aligned_cols=99  Identities=11%  Similarity=0.119  Sum_probs=64.6

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .+.++|+|||+|.||.+++..|....+    ..+|.+|+|++++++++..+     +.              ...+    
T Consensus       127 ~~~~~v~iIGaG~~a~~~a~al~~~~~----~~~V~V~~r~~~~a~~la~~-----~~--------------~~~g----  179 (350)
T 1x7d_A          127 PNARKMALIGNGAQSEFQALAFHKHLG----IEEIVAYDTDPLATAKLIAN-----LK--------------EYSG----  179 (350)
T ss_dssp             TTCCEEEEECCSTTHHHHHHHHHHHSC----CCEEEEECSSHHHHHHHHHH-----HT--------------TCTT----
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHhCC----CcEEEEEcCCHHHHHHHHHH-----HH--------------hccC----
Confidence            456799999999999999988764312    16899999998776542110     00              0000    


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEe
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL  196 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~  196 (333)
                                               ..+...++++++++++|+|+.|||+.....++.  ...+++   ++.|+.+
T Consensus       180 -------------------------~~~~~~~~~~eav~~aDiVi~aTps~~~~pvl~--~~~l~~---G~~V~~v  225 (350)
T 1x7d_A          180 -------------------------LTIRRASSVAEAVKGVDIITTVTADKAYATIIT--PDMLEP---GMHLNAV  225 (350)
T ss_dssp             -------------------------CEEEECSSHHHHHTTCSEEEECCCCSSEEEEEC--GGGCCT---TCEEEEC
T ss_pred             -------------------------ceEEEeCCHHHHHhcCCEEEEeccCCCCCceec--HHHcCC---CCEEEEC
Confidence                                     024556788899999999999999863222221  134555   6666554

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.67  E-value=4.7e-05  Score=75.82  Aligned_cols=92  Identities=22%  Similarity=0.281  Sum_probs=63.6

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      +.|||.|+|+|.+|..+|..|... |     |+|++++++++.++++..+                   .. ...+.   
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~-~-----~~v~vId~d~~~~~~~~~~-------------------~~-~~~i~---   52 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGE-N-----NDITIVDKDGDRLRELQDK-------------------YD-LRVVN---   52 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCST-T-----EEEEEEESCHHHHHHHHHH-------------------SS-CEEEE---
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHC-C-----CCEEEEECCHHHHHHHHHh-------------------cC-cEEEE---
Confidence            579999999999999999999988 7     9999999999876543210                   00 11110   


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHH-hcCCCEEEEecCchhHHHHHHHHHhhhhc
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISRYWKE  186 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea-~~~aDlIIlaVps~~~~~vl~~i~~~l~~  186 (333)
                      ++..                     .   .+-+++| +++||++|.++.++...-+.-.+++.+.+
T Consensus        53 Gd~~---------------------~---~~~L~~Agi~~ad~~ia~t~~De~Nl~~~~~Ak~~~~   94 (461)
T 4g65_A           53 GHAS---------------------H---PDVLHEAGAQDADMLVAVTNTDETNMAACQVAFTLFN   94 (461)
T ss_dssp             SCTT---------------------C---HHHHHHHTTTTCSEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred             EcCC---------------------C---HHHHHhcCCCcCCEEEEEcCChHHHHHHHHHHHHhcC
Confidence            1100                     0   1123333 67999999999998877777777766543

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.66  E-value=6e-05  Score=70.84  Aligned_cols=39  Identities=15%  Similarity=0.293  Sum_probs=30.2

Q ss_pred             CceEEEECCCHHHH-HHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGaG~mG~-alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ++||+|||+|.||. .++..|.+..+     .+|.++++++++++
T Consensus         2 ~~~igiIG~G~ig~~~~~~~l~~~~~-----~~l~v~d~~~~~~~   41 (323)
T 1xea_A            2 SLKIAMIGLGDIAQKAYLPVLAQWPD-----IELVLCTRNPKVLG   41 (323)
T ss_dssp             CEEEEEECCCHHHHHTHHHHHTTSTT-----EEEEEECSCHHHHH
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCC-----ceEEEEeCCHHHHH
Confidence            37999999999998 58888865413     67778999886554

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=97.65  E-value=0.00019  Score=68.51  Aligned_cols=85  Identities=12%  Similarity=0.079  Sum_probs=57.9

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeE-EEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .++||+|||+|.||..++..|... .    +.++ .++++++++++++.         +.            + .     
T Consensus         5 ~~~~vgiiG~G~ig~~~~~~l~~~-~----~~~lv~v~d~~~~~~~~~a---------~~------------~-~-----   52 (362)
T 1ydw_A            5 TQIRIGVMGCADIARKVSRAIHLA-P----NATISGVASRSLEKAKAFA---------TA------------N-N-----   52 (362)
T ss_dssp             -CEEEEEESCCTTHHHHHHHHHHC-T----TEEEEEEECSSHHHHHHHH---------HH------------T-T-----
T ss_pred             CceEEEEECchHHHHHHHHHHhhC-C----CcEEEEEEcCCHHHHHHHH---------HH------------h-C-----
Confidence            468999999999999999988765 2    1555 57888876543211         00            0 0     


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHH
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS  181 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~  181 (333)
                           ++                  ....+.+|+++.+.  +.|+|++|+|+....+++....
T Consensus        53 -----~~------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al   92 (362)
T 1ydw_A           53 -----YP------------------ESTKIHGSYESLLEDPEIDALYVPLPTSLHVEWAIKAA   92 (362)
T ss_dssp             -----CC------------------TTCEEESSHHHHHHCTTCCEEEECCCGGGHHHHHHHHH
T ss_pred             -----CC------------------CCCeeeCCHHHHhcCCCCCEEEEcCChHHHHHHHHHHH
Confidence                 00                  02345678888775  5899999999998777776543

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=97.64  E-value=0.00014  Score=68.52  Aligned_cols=82  Identities=18%  Similarity=0.120  Sum_probs=56.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCee-EEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ++||+|||+|.||..++..+... +.  .+.+ |-++++++++++++..        .             +        
T Consensus         2 ~~rigiiG~G~ig~~~~~~l~~~-~~--~~~~l~av~d~~~~~a~~~a~--------~-------------~--------   49 (334)
T 3ohs_X            2 ALRWGIVSVGLISSDFTAVLQTL-PR--SEHQVVAVAARDLSRAKEFAQ--------K-------------H--------   49 (334)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTS-CT--TTEEEEEEECSSHHHHHHHHH--------H-------------H--------
T ss_pred             ccEEEEECchHHHHHHHHHHHhC-CC--CCeEEEEEEcCCHHHHHHHHH--------H-------------c--------
Confidence            37999999999999999988654 20  0134 4578888765443110        0             0        


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhc--CCCEEEEecCchhHHHHHHHHH
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS  181 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~  181 (333)
                                               .+ .+.+|.++.+.  +.|+|++|+|.....+++....
T Consensus        50 -------------------------~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al   87 (334)
T 3ohs_X           50 -------------------------DIPKAYGSYEELAKDPNVEVAYVGTQHPQHKAAVMLCL   87 (334)
T ss_dssp             -------------------------TCSCEESSHHHHHHCTTCCEEEECCCGGGHHHHHHHHH
T ss_pred             -------------------------CCCcccCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHH
Confidence                                     11 24578888776  6899999999998777766554

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=97.64  E-value=0.00047  Score=64.67  Aligned_cols=128  Identities=13%  Similarity=0.123  Sum_probs=79.2

Q ss_pred             CCceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           42 DPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        42 ~~~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      .++||+|+| +|.||..++..+.+..+     .++. ++++++....             +.        ....+.++  
T Consensus        20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~-----~eLvg~vd~~~~~~~-------------G~--------d~gel~G~--   71 (288)
T 3ijp_A           20 GSMRLTVVGANGRMGRELITAIQRRKD-----VELCAVLVRKGSSFV-------------DK--------DASILIGS--   71 (288)
T ss_dssp             -CEEEEESSTTSHHHHHHHHHHHTCSS-----EEEEEEBCCTTCTTT-------------TS--------BGGGGTTC--
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCC-----CEEEEEEecCCcccc-------------cc--------chHHhhcc--
Confidence            568999999 89999999999876512     5543 5566542110             00        00001000  


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                              ....+.+++|+++.+.++|+||-++++....+.++...   ..   +..+|+.+.|
T Consensus        72 ------------------------~~~gv~v~~dl~~ll~~aDVvIDFT~p~a~~~~~~~~l---~~---Gv~vViGTTG  121 (288)
T 3ijp_A           72 ------------------------DFLGVRITDDPESAFSNTEGILDFSQPQASVLYANYAA---QK---SLIHIIGTTG  121 (288)
T ss_dssp             ------------------------SCCSCBCBSCHHHHTTSCSEEEECSCHHHHHHHHHHHH---HH---TCEEEECCCC
T ss_pred             ------------------------CcCCceeeCCHHHHhcCCCEEEEcCCHHHHHHHHHHHH---Hc---CCCEEEECCC
Confidence                                    00246678999998899999999988776665555544   33   5677777778


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHH
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI  240 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev  240 (333)
                      +..+.         -+.|.+...    ...++..||+..-+
T Consensus       122 ~~~e~---------~~~L~~aa~----~~~~~~a~N~SiGv  149 (288)
T 3ijp_A          122 FSKTE---------EAQIADFAK----YTTIVKSGNMSLGV  149 (288)
T ss_dssp             CCHHH---------HHHHHHHHT----TSEEEECSCCCHHH
T ss_pred             CCHHH---------HHHHHHHhC----cCCEEEECCCcHHH
Confidence            76531         123455442    14578899997543

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=97.64  E-value=9.5e-05  Score=61.86  Aligned_cols=86  Identities=19%  Similarity=0.144  Sum_probs=61.9

Q ss_pred             hHHHHhhccCCCCCceEEEECC----CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHH
Q 019978           30 DELRRLMGKAEGDPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLR  105 (333)
Q Consensus        30 ~~~~~~~~~~~~~~~kI~IIGa----G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~  105 (333)
                      +++++++.    ++.+|+|||+    |.+|..++..|.+. |     ++  +|.+++.+..+                  
T Consensus         4 ~~l~~ll~----~p~~vaVvGas~~~g~~G~~~~~~l~~~-G-----~~--v~~vnp~~~~~------------------   53 (140)
T 1iuk_A            4 QELRAYLS----QAKTIAVLGAHKDPSRPAHYVPRYLREQ-G-----YR--VLPVNPRFQGE------------------   53 (140)
T ss_dssp             HHHHHHHH----HCCEEEEETCCSSTTSHHHHHHHHHHHT-T-----CE--EEEECGGGTTS------------------
T ss_pred             HHHHHHHc----CCCEEEEECCCCCCCChHHHHHHHHHHC-C-----CE--EEEeCCCcccC------------------
Confidence            34556662    3569999999    89999999999988 8     75  78777753110                  


Q ss_pred             HhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhh
Q 019978          106 RLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY  183 (333)
Q Consensus       106 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~  183 (333)
                             .+.                               .+.+..++.+.-+..|++++++|+....++++++...
T Consensus        54 -------~i~-------------------------------G~~~~~sl~el~~~vDlavi~vp~~~~~~v~~~~~~~   93 (140)
T 1iuk_A           54 -------ELF-------------------------------GEEAVASLLDLKEPVDILDVFRPPSALMDHLPEVLAL   93 (140)
T ss_dssp             -------EET-------------------------------TEECBSSGGGCCSCCSEEEECSCHHHHTTTHHHHHHH
T ss_pred             -------cCC-------------------------------CEEecCCHHHCCCCCCEEEEEeCHHHHHHHHHHHHHc
Confidence                   011                               2334455656556799999999999999999887753

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=97.62  E-value=0.00021  Score=67.92  Aligned_cols=110  Identities=14%  Similarity=0.179  Sum_probs=68.6

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCC--CCeeEEEEecC----CcchhhhhhhhHHHHHhhhhhHHHHhhhccccc
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRP----GRSVDRATAEHLFEVINSREDVLRRLIRRCAYL  114 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~--~~~~V~l~~r~----~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l  114 (333)
                      .+|||+|+|+ |.+|+.++..|+.. |.+.  .-.+|.+++++    +++++.     .  ..+     +.   +.  ..
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~-~~~~~~~~~ev~l~Di~~~~~~~~~~g-----~--~~d-----l~---~~--~~   65 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANG-DMLGKDQPVILQLLEIPNEKAQKALQG-----V--MME-----ID---DC--AF   65 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTT-TTTCTTCCEEEEEECCSCHHHHHHHHH-----H--HHH-----HH---TT--TC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhC-CCcCCCCCCEEEEEcCCCccccccchh-----h--HHH-----Hh---hh--cc
Confidence            4589999998 99999999999887 6321  00379999998    432211     0  000     00   00  00


Q ss_pred             chhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC--c--------------hhHHHHHH
Q 019978          115 KYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--S--------------TETKEVFE  178 (333)
Q Consensus       115 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVp--s--------------~~~~~vl~  178 (333)
                      +          +                  ...+..+++..+++++||+||++..  .              ..+.++++
T Consensus        66 ~----------~------------------~~~i~~~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~  117 (329)
T 1b8p_A           66 P----------L------------------LAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGK  117 (329)
T ss_dssp             T----------T------------------EEEEEEESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             c----------c------------------cCcEEEecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            0          0                  0146677898999999999998652  1              12556666


Q ss_pred             HHHhhhhccCCCCEEEEeeecC
Q 019978          179 EISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       179 ~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                      .+.++.++   +..++.++|-+
T Consensus       118 ~i~~~~~p---~a~ii~~SNPv  136 (329)
T 1b8p_A          118 AIDAVASR---NIKVLVVGNPA  136 (329)
T ss_dssp             HHHHHSCT---TCEEEECSSSH
T ss_pred             HHHHhcCC---CeEEEEccCch
Confidence            66665423   56777777643

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=97.61  E-value=0.0002  Score=70.78  Aligned_cols=173  Identities=20%  Similarity=0.182  Sum_probs=103.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ++|+|||.|+-|.+=|..|.++ |     .+|++--|.....+.            +.           ......     
T Consensus        38 K~IaVIGyGsQG~AqAlNLRDS-G-----v~V~Vglr~~s~~e~------------~~-----------S~~~A~-----   83 (491)
T 3ulk_A           38 KKVVIVGCGAQGLNQGLNMRDS-G-----LDISYALRKEAIAEK------------RA-----------SWRKAT-----   83 (491)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHT-T-----CEEEEEECHHHHHTT------------CH-----------HHHHHH-----
T ss_pred             CEEEEeCCChHhHHHHhHHHhc-C-----CcEEEEeCCCCcccc------------cc-----------hHHHHH-----
Confidence            7999999999999999999999 8     899887764321100            00           000000     


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                               .+|            +++. +.+|+++.||+|++-+|.....+++++|.|.+++   ++.+ .++-|+...
T Consensus        84 ---------~~G------------f~v~-~~~eA~~~ADvV~~L~PD~~q~~vy~~I~p~lk~---G~~L-~faHGFnI~  137 (491)
T 3ulk_A           84 ---------ENG------------FKVG-TYEELIPQADLVINLTPDKQHSDVVRTVQPLMKD---GAAL-GYSHGFNIV  137 (491)
T ss_dssp             ---------HTT------------CEEE-EHHHHGGGCSEEEECSCGGGHHHHHHHHGGGSCT---TCEE-EESSCHHHH
T ss_pred             ---------HCC------------CEec-CHHHHHHhCCEEEEeCChhhHHHHHHHHHhhCCC---CCEE-EecCccccc
Confidence                     122            3332 4778999999999999999999999999999997   5544 467676542


Q ss_pred             ccCCccCCCHHHHHHhHhCCCCCcEEEE--cCCCchH--HHh--ccCceeEEEe--CC-----hhhHHHHHHHhCC--CC
Q 019978          204 LEAVPRIITPTQMINRATGVPIENILYL--GGPNIAS--EIY--NKEYANARIC--GA-----EKWRKPLAKFLRR--PH  268 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl--~GP~~a~--ev~--~~~~~~~~~~--~~-----~~~~~~l~~ll~~--~~  268 (333)
                      .             ....+.....+..+  -||.+..  +-.  .|.|+.+.+-  .|     .+.+..+..-.-.  .|
T Consensus       138 ~-------------~~i~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~liAVhqeqD~sG~a~~~AlayA~aiG~~raG  204 (491)
T 3ulk_A          138 E-------------VGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAG  204 (491)
T ss_dssp             T-------------TCCCCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEEEEECGGGCTTSCHHHHHHHHHHHHTGGGTC
T ss_pred             c-------------cccccCCCcceEEeCCCCCcHHHHHHHHcCCCCceEEEEEeCCCCchhHHHHHHHHHHhcCCCcCc
Confidence            1             11111112223222  4777643  222  3557765442  22     1334444444443  23


Q ss_pred             -----eEEEecCChhHHH--HHHHHHHH
Q 019978          269 -----FTVWDNGDLVTHE--VMGGLKNV  289 (333)
Q Consensus       269 -----~~v~~s~Di~gve--~~~alkNv  289 (333)
                           |+-.+.+|+.|-+  +||.+.-.
T Consensus       205 vieTTF~eEtetDLfGEQaVLcGgl~~l  232 (491)
T 3ulk_A          205 VLESSFVAEVKSDLMGEQTILCGMLQAG  232 (491)
T ss_dssp             EEECCHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred             eeeccHHHHHHHHHHhhHHHHHHHHHHH
Confidence                 2333568888876  67754443

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.60  E-value=5.2e-05  Score=69.76  Aligned_cols=36  Identities=28%  Similarity=0.256  Sum_probs=32.7

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchh
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVD   86 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~   86 (333)
                      +|+|||+|.||.+++..|.+. |     . +|++++|++++++
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~-G-----~~~I~v~nR~~~ka~  146 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQM-G-----VKDIWVVNRTIERAK  146 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-T-----CCCEEEEESCHHHHH
T ss_pred             eEEEECcHHHHHHHHHHHHHc-C-----CCEEEEEeCCHHHHH
Confidence            899999999999999999998 8     6 8999999987554

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=97.60  E-value=0.00033  Score=66.26  Aligned_cols=83  Identities=16%  Similarity=0.139  Sum_probs=56.0

Q ss_pred             CCceEEEECCCHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~a-lA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      .|+||+|||+|.||.. ++..+... .    +.+|. ++++++++++++.+        +             | .    
T Consensus        22 ~mirigiIG~G~ig~~~~~~~~~~~-~----~~~lvav~d~~~~~a~~~a~--------~-------------~-g----   70 (350)
T 4had_A           22 SMLRFGIISTAKIGRDNVVPAIQDA-E----NCVVTAIASRDLTRAREMAD--------R-------------F-S----   70 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHC-S----SEEEEEEECSSHHHHHHHHH--------H-------------H-T----
T ss_pred             CccEEEEEcChHHHHHHHHHHHHhC-C----CeEEEEEECCCHHHHHHHHH--------H-------------c-C----
Confidence            4689999999999975 45566554 2    25655 78888876543210        0             0 0    


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHh
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                                                 -.++.+|.++.+.  +.|+|++|+|+....+++.....
T Consensus        71 ---------------------------~~~~y~d~~ell~~~~iDaV~I~tP~~~H~~~~~~al~  108 (350)
T 4had_A           71 ---------------------------VPHAFGSYEEMLASDVIDAVYIPLPTSQHIEWSIKAAD  108 (350)
T ss_dssp             ---------------------------CSEEESSHHHHHHCSSCSEEEECSCGGGHHHHHHHHHH
T ss_pred             ---------------------------CCeeeCCHHHHhcCCCCCEEEEeCCCchhHHHHHHHHh
Confidence                                       0135678888775  57999999999877777666543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.57  E-value=0.00014  Score=71.37  Aligned_cols=101  Identities=21%  Similarity=0.288  Sum_probs=66.2

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ..++|.|+|+|.+|..++..|... |     ++|++++++++.++.++..+                  ...+.      
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~-g-----~~vvvId~d~~~v~~~~~~g------------------~~vi~------   52 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSS-G-----VKMVVLDHDPDHIETLRKFG------------------MKVFY------   52 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECCHHHHHHHHHTT------------------CCCEE------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC-C-----CCEEEEECCHHHHHHHHhCC------------------CeEEE------
Confidence            447899999999999999999998 8     99999999998765432111                  00010      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHH-hcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea-~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                      ++..                     .   ...++++ +++||+||++++.......+-...+.+.+   +..||.-++.
T Consensus        53 GDat---------------------~---~~~L~~agi~~A~~viv~~~~~~~n~~i~~~ar~~~p---~~~Iiara~~  104 (413)
T 3l9w_A           53 GDAT---------------------R---MDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFP---HLQIIARARD  104 (413)
T ss_dssp             SCTT---------------------C---HHHHHHTTTTTCSEEEECCSSHHHHHHHHHHHHHHCT---TCEEEEEESS
T ss_pred             cCCC---------------------C---HHHHHhcCCCccCEEEECCCChHHHHHHHHHHHHhCC---CCeEEEEECC
Confidence            1100                     0   0113333 67899999999998766665555555555   4456655543

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=97.56  E-value=0.00024  Score=67.51  Aligned_cols=39  Identities=10%  Similarity=0.284  Sum_probs=31.4

Q ss_pred             CCCceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           41 GDPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        41 ~~~~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ..+|||+|+| +|.+|.+++..|+.. |.   .++|.+++++++
T Consensus         6 ~~~mKI~ViGAaG~VG~~la~~L~~~-g~---~~ev~l~Di~~~   45 (326)
T 1smk_A            6 APGFKVAILGAAGGIGQPLAMLMKMN-PL---VSVLHLYDVVNA   45 (326)
T ss_dssp             --CEEEEEETTTSTTHHHHHHHHHHC-TT---EEEEEEEESSSH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHhC-CC---CCEEEEEeCCCc
Confidence            3568999999 799999999999887 52   158999998875

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=97.55  E-value=0.00026  Score=67.71  Aligned_cols=82  Identities=16%  Similarity=0.102  Sum_probs=57.4

Q ss_pred             CceEEEECCCHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGaG~mG~a-lA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ++||+|||+|.||.. ++..|.+. .    +.+|. ++++++++++++..                      .+.     
T Consensus         5 ~~rigiIG~G~~g~~~~~~~l~~~-~----~~~l~av~d~~~~~~~~~a~----------------------~~~-----   52 (359)
T 3m2t_A            5 LIKVGLVGIGAQMQENLLPSLLQM-Q----DIRIVAACDSDLERARRVHR----------------------FIS-----   52 (359)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTC-T----TEEEEEEECSSHHHHGGGGG----------------------TSC-----
T ss_pred             cceEEEECCCHHHHHHHHHHHHhC-C----CcEEEEEEcCCHHHHHHHHH----------------------hcC-----
Confidence            479999999999985 88888764 2    26765 88998875543110                      000     


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHh
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~--aDlIIlaVps~~~~~vl~~i~~  182 (333)
                                                ...+.+|+++.+.+  .|+|++|+|+....+++.....
T Consensus        53 --------------------------~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~   90 (359)
T 3m2t_A           53 --------------------------DIPVLDNVPAMLNQVPLDAVVMAGPPQLHFEMGLLAMS   90 (359)
T ss_dssp             --------------------------SCCEESSHHHHHHHSCCSEEEECSCHHHHHHHHHHHHH
T ss_pred             --------------------------CCcccCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHH
Confidence                                      23456788888764  5999999999887777765543

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=97.55  E-value=0.0001  Score=69.85  Aligned_cols=94  Identities=19%  Similarity=0.198  Sum_probs=62.4

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .+.++|+|||+|.||...+..|....+    ..+|.+|+|+  +++++.     +.+...             + +    
T Consensus       119 ~~~~~v~iIGaG~~a~~~~~al~~~~~----~~~V~v~~r~--~a~~la-----~~l~~~-------------~-g----  169 (313)
T 3hdj_A          119 PRSSVLGLFGAGTQGAEHAAQLSARFA----LEAILVHDPY--ASPEIL-----ERIGRR-------------C-G----  169 (313)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSC----CCEEEEECTT--CCHHHH-----HHHHHH-------------H-T----
T ss_pred             CCCcEEEEECccHHHHHHHHHHHHhCC----CcEEEEECCc--HHHHHH-----HHHHHh-------------c-C----
Confidence            456899999999999999999987412    1689999999  443321     111100             0 0    


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEe
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL  196 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~  196 (333)
                                               ..+.+. ++++++.++|+|+.|||+..  .++.  ..++++   +++|+.+
T Consensus       170 -------------------------~~~~~~-~~~eav~~aDIVi~aT~s~~--pvl~--~~~l~~---G~~V~~v  212 (313)
T 3hdj_A          170 -------------------------VPARMA-APADIAAQADIVVTATRSTT--PLFA--GQALRA---GAFVGAI  212 (313)
T ss_dssp             -------------------------SCEEEC-CHHHHHHHCSEEEECCCCSS--CSSC--GGGCCT---TCEEEEC
T ss_pred             -------------------------CeEEEe-CHHHHHhhCCEEEEccCCCC--cccC--HHHcCC---CcEEEEC
Confidence                                     034455 89999999999999999852  2222  245565   6666554

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=97.52  E-value=0.00023  Score=63.87  Aligned_cols=99  Identities=15%  Similarity=0.258  Sum_probs=68.1

Q ss_pred             chHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHH--HhcCCCCCCeeE-EEEecCCc-chhhhhhhhHHHHHhh
Q 019978           24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQ--DSYGYLRDKVLI-RIWRRPGR-SVDRATAEHLFEVINS   99 (333)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La--~~~G~~~~~~~V-~l~~r~~~-~~~~~~~~~l~~~i~~   99 (333)
                      +.++=+++++..+|...  ..+|+|+|+|++|.+++..+.  .. |     +++ -++|.+++ +..+            
T Consensus        67 ~V~~L~~~i~~~Lg~~~--~~~V~IvGaG~lG~aLa~~~~~~~~-g-----~~iVg~~D~dp~~kiG~------------  126 (212)
T 3keo_A           67 DVKKLMNFFAEILNDHS--TTNVMLVGCGNIGRALLHYRFHDRN-K-----MQISMAFDLDSNDLVGK------------  126 (212)
T ss_dssp             EHHHHHHHHHHHTTTTS--CEEEEEECCSHHHHHHTTCCCCTTS-S-----EEEEEEEECTTSTTTTC------------
T ss_pred             EHHHHHHHHHHHhCCCC--CCEEEEECcCHHHHHHHHhhhcccC-C-----eEEEEEEeCCchhccCc------------
Confidence            56666777888887554  359999999999999998842  22 3     664 46788876 4310            


Q ss_pred             hhhHHHHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHH
Q 019978          100 REDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVF  177 (333)
Q Consensus       100 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl  177 (333)
                                  ....++                             ++...+++++.++  +.|.+|+|+|+...++++
T Consensus       127 ------------~~i~Gv-----------------------------pV~~~~dL~~~v~~~~Id~vIIAvPs~~aq~v~  165 (212)
T 3keo_A          127 ------------TTEDGI-----------------------------PVYGISTINDHLIDSDIETAILTVPSTEAQEVA  165 (212)
T ss_dssp             ------------BCTTCC-----------------------------BEEEGGGHHHHC-CCSCCEEEECSCGGGHHHHH
T ss_pred             ------------eeECCe-----------------------------EEeCHHHHHHHHHHcCCCEEEEecCchhHHHHH
Confidence                        011111                             2444577777665  589999999999888888


Q ss_pred             HHHHhh
Q 019978          178 EEISRY  183 (333)
Q Consensus       178 ~~i~~~  183 (333)
                      +.+...
T Consensus       166 d~lv~~  171 (212)
T 3keo_A          166 DILVKA  171 (212)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            887753

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.50  E-value=0.00018  Score=67.53  Aligned_cols=66  Identities=21%  Similarity=0.160  Sum_probs=48.9

Q ss_pred             cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchhh
Q 019978           15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDR   87 (333)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~   87 (333)
                      +|-+..+|-...--+.++++.-+. .-..++|+|+|+|.+|.+++..|++. |     . +|++|+|+++++++
T Consensus       114 ~g~l~g~nTd~~G~~~~l~~~~~~-~l~~~~vlVlGaGg~g~aia~~L~~~-G-----~~~V~v~nR~~~ka~~  180 (297)
T 2egg_A          114 DGRLVGYNTDGLGYVQALEEEMNI-TLDGKRILVIGAGGGARGIYFSLLST-A-----AERIDMANRTVEKAER  180 (297)
T ss_dssp             TTEEEEECCHHHHHHHHHHHHTTC-CCTTCEEEEECCSHHHHHHHHHHHTT-T-----CSEEEEECSSHHHHHH
T ss_pred             CCeEeeccCCHHHHHHHHHHhCCC-CCCCCEEEEECcHHHHHHHHHHHHHC-C-----CCEEEEEeCCHHHHHH
Confidence            455556676666666677653212 12347999999999999999999998 8     6 89999999876543

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.49  E-value=0.00019  Score=67.98  Aligned_cols=43  Identities=7%  Similarity=0.096  Sum_probs=34.8

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      .+.++|+|||+|.+|..++..|....+    ..+|.+|+|+++++++
T Consensus       123 ~~~~~v~iIGaG~~a~~~~~al~~~~~----~~~V~v~~r~~~~a~~  165 (322)
T 1omo_A          123 KNSSVFGFIGCGTQAYFQLEALRRVFD----IGEVKAYDVREKAAKK  165 (322)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSC----CCEEEEECSSHHHHHH
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHhCC----ccEEEEECCCHHHHHH
Confidence            456799999999999999999987412    1689999999887654

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.49  E-value=0.00038  Score=66.84  Aligned_cols=129  Identities=19%  Similarity=0.187  Sum_probs=70.0

Q ss_pred             ccccchHHhhhHHHHhhccCCCCCceEEEECC-CHHHHHHHHHHHHhcCCCCCC--eeEEEEecCCcchhhhhhhhHHHH
Q 019978           20 HTNGSLEERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDK--VLIRIWRRPGRSVDRATAEHLFEV   96 (333)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~--~~V~l~~r~~~~~~~~~~~~l~~~   96 (333)
                      |-=|+++.|-..+      .+....||+|+|| |.+|.+++..|+.. ..+..+  .++.|+|.++.. +.+  +++.  
T Consensus         7 ~~~~~~~~~~~~~------~s~~~vKVaViGAaG~IG~~la~~la~~-~l~~~~~~~eL~L~Di~~~~-~~~--~Gva--   74 (345)
T 4h7p_A            7 HHMGTLEAQTQGP------GSMSAVKVAVTGAAGQIGYALVPLIARG-ALLGPTTPVELRLLDIEPAL-KAL--AGVE--   74 (345)
T ss_dssp             ---------------------CCCEEEEEESTTSHHHHHHHHHHHHT-TTTCTTCCEEEEEECCGGGH-HHH--HHHH--
T ss_pred             cccccccccccCC------CCCCCCEEEEECcCcHHHHHHHHHHHhc-cccCCCCccEEEEECCCCcc-ccc--hhhh--
Confidence            3346666653332      2223469999997 99999999999886 432211  278999997642 111  1110  


Q ss_pred             HhhhhhHHHHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cch---
Q 019978           97 INSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PST---  171 (333)
Q Consensus        97 i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaV--ps~---  171 (333)
                      ++     |+    ++ ..+          +                  ...+..+++..+++++||+||++-  |..   
T Consensus        75 ~D-----L~----~~-~~~----------~------------------~~~~~~~~~~~~a~~~advVvi~aG~prkpGm  116 (345)
T 4h7p_A           75 AE-----LE----DC-AFP----------L------------------LDKVVVTADPRVAFDGVAIAIMCGAFPRKAGM  116 (345)
T ss_dssp             HH-----HH----HT-TCT----------T------------------EEEEEEESCHHHHTTTCSEEEECCCCCCCTTC
T ss_pred             hh-----hh----hc-Ccc----------C------------------CCcEEEcCChHHHhCCCCEEEECCCCCCCCCC
Confidence            11     00    00 011          0                  014677889999999999999953  321   


Q ss_pred             -----------hHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          172 -----------ETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       172 -----------~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                 .++++.+.|.++..+   +..|+.++|-+.
T Consensus       117 tR~DLl~~Na~I~~~~~~~i~~~a~~---~~~vlvvsNPvd  154 (345)
T 4h7p_A          117 ERKDLLEMNARIFKEQGEAIAAVAAS---DCRVVVVGNPAN  154 (345)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHSCT---TCEEEECSSSHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHhhccC---ceEEEEeCCCcc
Confidence                       355666666666544   677777776544

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.49  E-value=0.00036  Score=66.69  Aligned_cols=80  Identities=18%  Similarity=0.245  Sum_probs=56.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ++||+|||+|.||...+..+.+. .    +.+|. ++++++++++..         ..                      
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~-~----~~~l~av~d~~~~~~~~a---------~~----------------------   48 (359)
T 3e18_A            5 KYQLVIVGYGGMGSYHVTLASAA-D----NLEVHGVFDILAEKREAA---------AQ----------------------   48 (359)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTS-T----TEEEEEEECSSHHHHHHH---------HT----------------------
T ss_pred             cCcEEEECcCHHHHHHHHHHHhC-C----CcEEEEEEcCCHHHHHHH---------Hh----------------------
Confidence            47999999999999999988765 2    26654 678887543210         00                      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHh
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                                              ..+.+.+|+++.+.  +.|+|++|+|+....+++.....
T Consensus        49 ------------------------~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~   87 (359)
T 3e18_A           49 ------------------------KGLKIYESYEAVLADEKVDAVLIATPNDSHKELAISALE   87 (359)
T ss_dssp             ------------------------TTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHH
T ss_pred             ------------------------cCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHH
Confidence                                    02334578888776  78999999999887777665543

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=97.48  E-value=0.00053  Score=64.95  Aligned_cols=86  Identities=17%  Similarity=0.104  Sum_probs=58.1

Q ss_pred             CCCCCceEEEECCC-HHHHHHHHHHHHhcCCCCCCeeE-EEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccch
Q 019978           39 AEGDPLRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKY  116 (333)
Q Consensus        39 ~~~~~~kI~IIGaG-~mG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~  116 (333)
                      ...+++||+|||+| .+|...+..+... +   ++.++ -++++++++++++.         +.             +. 
T Consensus        14 ~~~~~irvgiIG~G~~~g~~~~~~l~~~-~---~~~~lvav~d~~~~~~~~~a---------~~-------------~~-   66 (340)
T 1zh8_A           14 KPLRKIRLGIVGCGIAARELHLPALKNL-S---HLFEITAVTSRTRSHAEEFA---------KM-------------VG-   66 (340)
T ss_dssp             --CCCEEEEEECCSHHHHHTHHHHHHTT-T---TTEEEEEEECSSHHHHHHHH---------HH-------------HS-
T ss_pred             CCCCceeEEEEecCHHHHHHHHHHHHhC-C---CceEEEEEEcCCHHHHHHHH---------HH-------------hC-
Confidence            34456899999999 8999999888764 2   11555 57888876543211         00             00 


Q ss_pred             hhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHH
Q 019978          117 VEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS  181 (333)
Q Consensus       117 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~  181 (333)
                                                    ...+.+|.++.+.  +.|+|++|+|+....+++....
T Consensus        67 ------------------------------~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al  103 (340)
T 1zh8_A           67 ------------------------------NPAVFDSYEELLESGLVDAVDLTLPVELNLPFIEKAL  103 (340)
T ss_dssp             ------------------------------SCEEESCHHHHHHSSCCSEEEECCCGGGHHHHHHHHH
T ss_pred             ------------------------------CCcccCCHHHHhcCCCCCEEEEeCCchHHHHHHHHHH
Confidence                                          1245678888775  5899999999987777766544

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=97.46  E-value=0.00032  Score=67.69  Aligned_cols=81  Identities=19%  Similarity=0.161  Sum_probs=56.8

Q ss_pred             CceEEEECCC-HHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGaG-~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ++||+|||+| .||..++..+... .    +.++. ++++++++++++.         +.            +       
T Consensus         2 ~~rigiiG~G~~~~~~~~~~l~~~-~----~~~l~av~d~~~~~~~~~a---------~~------------~-------   48 (387)
T 3moi_A            2 KIRFGICGLGFAGSVLMAPAMRHH-P----DAQIVAACDPNEDVRERFG---------KE------------Y-------   48 (387)
T ss_dssp             CEEEEEECCSHHHHTTHHHHHHHC-T----TEEEEEEECSCHHHHHHHH---------HH------------H-------
T ss_pred             ceEEEEEeCCHHHHHHHHHHHHhC-C----CeEEEEEEeCCHHHHHHHH---------HH------------c-------
Confidence            4799999999 9999999998775 3    15554 7888876543211         00            0       


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHh
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                                                .+...+|.++.+.  +.|+|++++|+....+++.....
T Consensus        49 --------------------------g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~~~~al~   86 (387)
T 3moi_A           49 --------------------------GIPVFATLAEMMQHVQMDAVYIASPHQFHCEHVVQASE   86 (387)
T ss_dssp             --------------------------TCCEESSHHHHHHHSCCSEEEECSCGGGHHHHHHHHHH
T ss_pred             --------------------------CCCeECCHHHHHcCCCCCEEEEcCCcHHHHHHHHHHHH
Confidence                                      2335578888776  48999999999877776665443

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=97.45  E-value=0.00059  Score=64.28  Aligned_cols=80  Identities=10%  Similarity=0.177  Sum_probs=56.0

Q ss_pred             CceEEEECCCHHHH-HHHHHHHHhcCCCCCCeeE-EEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGaG~mG~-alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ++||+|||+|.+|. .++..+... +     .+| -++++++++++++..                      .++     
T Consensus         4 ~~rvgiiG~G~~~~~~~~~~l~~~-~-----~~lvav~d~~~~~~~~~a~----------------------~~~-----   50 (336)
T 2p2s_A            4 KIRFAAIGLAHNHIYDMCQQLIDA-G-----AELAGVFESDSDNRAKFTS----------------------LFP-----   50 (336)
T ss_dssp             CCEEEEECCSSTHHHHHHHHHHHT-T-----CEEEEEECSCTTSCHHHHH----------------------HST-----
T ss_pred             ccEEEEECCChHHHHHhhhhhcCC-C-----cEEEEEeCCCHHHHHHHHH----------------------hcC-----
Confidence            57999999999996 577777554 5     674 689999877643210                      010     


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHH
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS  181 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~  181 (333)
                                                ...+.+|.++.+.  +.|+|++|+|.....+++....
T Consensus        51 --------------------------~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al   87 (336)
T 2p2s_A           51 --------------------------SVPFAASAEQLITDASIDLIACAVIPCDRAELALRTL   87 (336)
T ss_dssp             --------------------------TCCBCSCHHHHHTCTTCCEEEECSCGGGHHHHHHHHH
T ss_pred             --------------------------CCcccCCHHHHhhCCCCCEEEEeCChhhHHHHHHHHH
Confidence                                      1234577888776  5899999999987776666544

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=97.45  E-value=0.00039  Score=65.90  Aligned_cols=80  Identities=13%  Similarity=0.168  Sum_probs=53.9

Q ss_pred             CceEEEECCCHHHHHHHHH-H-HHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAM-L-QDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~-L-a~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      ++||+|||+|.||..+... + ....+     .+|. +++++++..+.                          ...   
T Consensus         2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~-----~~l~av~d~~~~~~~~--------------------------~~~---   47 (345)
T 3f4l_A            2 VINCAFIGFGKSTTRYHLPYVLNRKDS-----WHVAHIFRRHAKPEEQ--------------------------API---   47 (345)
T ss_dssp             CEEEEEECCSHHHHHHTHHHHTTCTTT-----EEEEEEECSSCCGGGG--------------------------SGG---
T ss_pred             ceEEEEEecCHHHHHHHHHHHHhcCCC-----eEEEEEEcCCHhHHHH--------------------------HHh---
Confidence            4799999999999864333 3 33212     6766 88998865421                          000   


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHHH
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEIS  181 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~--aDlIIlaVps~~~~~vl~~i~  181 (333)
                            .                   ..+.+.+|+++.+.+  .|+|++|+|+....+++....
T Consensus        48 ------~-------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al   86 (345)
T 3f4l_A           48 ------Y-------------------SHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKRAL   86 (345)
T ss_dssp             ------G-------------------TTCEEESCTHHHHTCTTEEEEEECSCGGGHHHHHHHHH
T ss_pred             ------c-------------------CCCceECCHHHHhcCCCCCEEEEcCChHHHHHHHHHHH
Confidence                  0                   034566888888775  899999999987777766544

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=97.43  E-value=0.00037  Score=62.39  Aligned_cols=97  Identities=16%  Similarity=0.178  Sum_probs=64.8

Q ss_pred             hHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeE-EEEecCCcchhhhhhhhHHHHHhhhhhH
Q 019978           25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDV  103 (333)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~  103 (333)
                      +++-++++++..|...  .+||+|||+|.+|.+++..+....|     +++ -++|.++++..+                
T Consensus        64 v~~L~~~~~~~lg~~~--~~rV~IIGaG~~G~~la~~~~~~~g-----~~iVg~~D~dp~k~g~----------------  120 (211)
T 2dt5_A           64 VPVLKRELRHILGLNR--KWGLCIVGMGRLGSALADYPGFGES-----FELRGFFDVDPEKVGR----------------  120 (211)
T ss_dssp             HHHHHHHHHHHHTTTS--CEEEEEECCSHHHHHHHHCSCCCSS-----EEEEEEEESCTTTTTC----------------
T ss_pred             hHHHHHHHHHHhCcCC--CCEEEEECccHHHHHHHHhHhhcCC-----cEEEEEEeCCHHHHhh----------------
Confidence            4444566667667543  4799999999999999986322103     554 477888764321                


Q ss_pred             HHHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc-CCCEEEEecCchhHHHHHHHHHh
Q 019978          104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW-DADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       104 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~-~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                               ...++                             ++...+++++.++ +.|.|++|+|+....++++.+..
T Consensus       121 ---------~i~gv-----------------------------~V~~~~dl~ell~~~ID~ViIA~Ps~~~~ei~~~l~~  162 (211)
T 2dt5_A          121 ---------PVRGG-----------------------------VIEHVDLLPQRVPGRIEIALLTVPREAAQKAADLLVA  162 (211)
T ss_dssp             ---------EETTE-----------------------------EEEEGGGHHHHSTTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred             ---------hhcCC-----------------------------eeecHHhHHHHHHcCCCEEEEeCCchhHHHHHHHHHH
Confidence                     11110                             2444677877765 58999999999988888887764

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=97.41  E-value=0.00065  Score=65.03  Aligned_cols=79  Identities=19%  Similarity=0.284  Sum_probs=54.3

Q ss_pred             CCceEEEECCCHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~a-lA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      .++||+|||+|.||.. .+..+... .    +.+|. +++++++++++                         ..+    
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~l~~~-~----~~~l~av~d~~~~~~~~-------------------------~~~----   51 (364)
T 3e82_A            6 NTINIALIGYGFVGKTFHAPLIRSV-P----GLNLAFVASRDEEKVKR-------------------------DLP----   51 (364)
T ss_dssp             -CEEEEEECCSHHHHHTHHHHHHTS-T----TEEEEEEECSCHHHHHH-------------------------HCT----
T ss_pred             CcceEEEECCCHHHHHHHHHHHhhC-C----CeEEEEEEcCCHHHHHh-------------------------hCC----
Confidence            4589999999999996 56666554 2    16654 77887653210                         000    


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHH
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS  181 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~  181 (333)
                                                 ...+.+|.++.+.  +.|+|++|+|.....+++....
T Consensus        52 ---------------------------~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~~~~al   88 (364)
T 3e82_A           52 ---------------------------DVTVIASPEAAVQHPDVDLVVIASPNATHAPLARLAL   88 (364)
T ss_dssp             ---------------------------TSEEESCHHHHHTCTTCSEEEECSCGGGHHHHHHHHH
T ss_pred             ---------------------------CCcEECCHHHHhcCCCCCEEEEeCChHHHHHHHHHHH
Confidence                                       2456688888887  6899999999987776666543

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=97.41  E-value=0.0012  Score=61.57  Aligned_cols=94  Identities=17%  Similarity=0.174  Sum_probs=67.9

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ..+||+|+|+ |.||...+..+.+. |     .+ .++..++....+                         ..      
T Consensus         6 ~~~rVaViG~sG~~G~~~~~~l~~~-g-----~~-~V~~V~p~~~g~-------------------------~~------   47 (288)
T 2nu8_A            6 KNTKVICQGFTGSQGTFHSEQAIAY-G-----TK-MVGGVTPGKGGT-------------------------TH------   47 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHH-T-----CE-EEEEECTTCTTC-------------------------EE------
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC-C-----Ce-EEEEeCCCcccc-------------------------ee------
Confidence            4579999998 99999999999887 7     66 455666532100                         00      


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                               ..+.+..+++++.+  ++|++++++|+....+++++.... .    -..+|.++.
T Consensus        48 -------------------------~G~~vy~sl~el~~~~~~D~viI~tP~~~~~~~~~ea~~~-G----i~~iVi~t~   97 (288)
T 2nu8_A           48 -------------------------LGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDA-G----IKLIITITE   97 (288)
T ss_dssp             -------------------------TTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHHHHHHT-T----CSEEEECCC
T ss_pred             -------------------------CCeeccCCHHHHhhcCCCCEEEEecCHHHHHHHHHHHHHC-C----CCEEEEECC
Confidence                                     13556677888777  899999999999999999887653 1    234566777


Q ss_pred             cCccc
Q 019978          199 GVEAE  203 (333)
Q Consensus       199 Gi~~~  203 (333)
                      |+..+
T Consensus        98 G~~~~  102 (288)
T 2nu8_A           98 GIPTL  102 (288)
T ss_dssp             CCCHH
T ss_pred             CCCHH
Confidence            88654

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.41  E-value=0.00016  Score=64.53  Aligned_cols=37  Identities=14%  Similarity=-0.031  Sum_probs=32.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .++|.|+|+|.+|..++..|.+. |     + |++++++++.++
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~-g-----~-v~vid~~~~~~~   45 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGS-E-----V-FVLAEDENVRKK   45 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTS-E-----E-EEEESCGGGHHH
T ss_pred             CCEEEEECCChHHHHHHHHHHhC-C-----e-EEEEECCHHHHH
Confidence            46899999999999999999888 7     9 999999987654

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=97.40  E-value=0.00034  Score=68.79  Aligned_cols=86  Identities=13%  Similarity=0.042  Sum_probs=56.7

Q ss_pred             CCceEEEECCCHHHH-HHHHHHHHhcCCCCCCeeE-EEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           42 DPLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~-alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      .++||+|||+|.||. .++..|.+. +    +.++ .++++++++++++..        ..         +   .+.   
T Consensus        82 ~~irigiIG~G~~g~~~~~~~l~~~-~----~~~lvav~d~~~~~~~~~a~--------~~---------g---~~~---  133 (433)
T 1h6d_A           82 RRFGYAIVGLGKYALNQILPGFAGC-Q----HSRIEALVSGNAEKAKIVAA--------EY---------G---VDP---  133 (433)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTC-S----SEEEEEEECSCHHHHHHHHH--------HT---------T---CCG---
T ss_pred             CceEEEEECCcHHHHHHHHHHHhhC-C----CcEEEEEEcCCHHHHHHHHH--------Hh---------C---CCc---
Confidence            357999999999997 888888664 2    1564 578888765432110        00         0   000   


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHH
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS  181 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~  181 (333)
                                                ..+.+.+|.++.++  +.|+|++|+|.....+++....
T Consensus       134 --------------------------~~~~~~~~~~~ll~~~~vD~V~iatp~~~h~~~~~~al  171 (433)
T 1h6d_A          134 --------------------------RKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAF  171 (433)
T ss_dssp             --------------------------GGEECSSSGGGGGGCTTCCEEEECSCGGGHHHHHHHHH
T ss_pred             --------------------------ccccccCCHHHHhcCCCCCEEEEcCCchhHHHHHHHHH
Confidence                                      01334567777765  6899999999998777776654

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=97.36  E-value=0.00073  Score=62.68  Aligned_cols=127  Identities=19%  Similarity=0.137  Sum_probs=74.8

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      +|||+|+|+ |.||..++..+....|     +++. +++++++....           .          .-..+-++   
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~-----~elva~~d~~~~~~~g-----------~----------d~~~~~g~---   55 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEG-----VQLGAALEREGSSLLG-----------S----------DAGELAGA---   55 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTT-----EECCCEECCTTCTTCS-----------C----------CTTCSSSS---
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCC-----CEEEEEEecCchhhhh-----------h----------hHHHHcCC---
Confidence            489999998 9999999998875424     7776 67776542100           0          00000000   


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                            .                 ...+.+++|+++++.++|+||-++++....+.+.....   .   +..+|+-+.|+
T Consensus        56 ------~-----------------~~~v~~~~dl~~~l~~~DvVIDft~p~~~~~~~~~a~~---~---G~~vVigTtG~  106 (273)
T 1dih_A           56 ------G-----------------KTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQ---H---GKGMVIGTTGF  106 (273)
T ss_dssp             ------S-----------------CCSCCEESCSTTTTTSCSEEEECSCHHHHHHHHHHHHH---T---TCEEEECCCCC
T ss_pred             ------C-----------------cCCceecCCHHHHhcCCCEEEEcCChHHHHHHHHHHHh---C---CCCEEEECCCC
Confidence                  0                 01345677888878889999966666655555554433   2   45666655577


Q ss_pred             cccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHH
Q 019978          201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI  240 (333)
Q Consensus       201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev  240 (333)
                      ..+.         .+.+.+.-.  .  ..++..||+...+
T Consensus       107 ~~e~---------~~~L~~~a~--~--~~vv~a~N~siGv  133 (273)
T 1dih_A          107 DEAG---------KQAIRDAAA--D--IAIVFAANFSVGV  133 (273)
T ss_dssp             CHHH---------HHHHHHHTT--T--SCEEECSCCCHHH
T ss_pred             CHHH---------HHHHHHhcC--C--CCEEEEecCcHHH
Confidence            6541         133443321  1  2367788876543

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=97.36  E-value=0.00084  Score=63.76  Aligned_cols=79  Identities=13%  Similarity=0.161  Sum_probs=54.5

Q ss_pred             CCceEEEECCCHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~a-lA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      .++||+|||+|.||.. .+..+... .    +.+|. +++++++++++                         ...    
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~~~~~-~----~~~l~av~d~~~~~~~~-------------------------~~~----   51 (352)
T 3kux_A            6 DKIKVGLLGYGYASKTFHAPLIMGT-P----GLELAGVSSSDASKVHA-------------------------DWP----   51 (352)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTS-T----TEEEEEEECSCHHHHHT-------------------------TCS----
T ss_pred             CCceEEEECCCHHHHHHHHHHHhhC-C----CcEEEEEECCCHHHHHh-------------------------hCC----
Confidence            4589999999999997 66666654 2    16654 77887653210                         011    


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHHH
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEIS  181 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~--aDlIIlaVps~~~~~vl~~i~  181 (333)
                                                 .+.+.+|+++.+.+  .|+|++|+|+....+++....
T Consensus        52 ---------------------------~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al   88 (352)
T 3kux_A           52 ---------------------------AIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLAQSAL   88 (352)
T ss_dssp             ---------------------------SCCEESCHHHHHHCSSCCEEEECSCTTTHHHHHHHHH
T ss_pred             ---------------------------CCceECCHHHHhcCCCCCEEEEeCChHHHHHHHHHHH
Confidence                                       23456888888765  899999999987766665543

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.36  E-value=0.00065  Score=63.71  Aligned_cols=38  Identities=29%  Similarity=0.292  Sum_probs=27.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcch
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSV   85 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~   85 (333)
                      ++||+|||+|.||..++..+.+..+     .++. +++++++.+
T Consensus         9 ~irv~IIG~G~iG~~~~~~l~~~~~-----~elvav~d~~~~~~   47 (304)
T 3bio_A            9 KIRAAIVGYGNIGRYALQALREAPD-----FEIAGIVRRNPAEV   47 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTT-----EEEEEEECC-----
T ss_pred             CCEEEEECChHHHHHHHHHHhcCCC-----CEEEEEEcCCHHHH
Confidence            5799999999999999999887513     6776 788887643

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.35  E-value=0.00014  Score=67.88  Aligned_cols=37  Identities=16%  Similarity=0.084  Sum_probs=33.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~   86 (333)
                      +++.|+|+|.+|.+++..|++. |     . +|++++|+.++++
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~-G-----~~~v~v~~R~~~~a~  155 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKI-V-----RPTLTVANRTMSRFN  155 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTT-C-----CSCCEEECSCGGGGT
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-C-----CCEEEEEeCCHHHHH
Confidence            6899999999999999999998 8     6 8999999987654

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=97.35  E-value=0.00059  Score=66.16  Aligned_cols=88  Identities=17%  Similarity=0.150  Sum_probs=57.7

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCC----CCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccc
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGY----LRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLK  115 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~----~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~  115 (333)
                      .+++||+|||+|.||...+..+.+. +.    +.++.+|+ +++++++++++..+        +              +.
T Consensus        24 s~klrvgiIG~G~ig~~h~~~~~~~-~~~~~~~~~~~elvav~d~~~~~a~~~a~--------~--------------~~   80 (412)
T 4gqa_A           24 SARLNIGLIGSGFMGQAHADAYRRA-AMFYPDLPKRPHLYALADQDQAMAERHAA--------K--------------LG   80 (412)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHH-HHHCTTSSSEEEEEEEECSSHHHHHHHHH--------H--------------HT
T ss_pred             cccceEEEEcCcHHHHHHHHHHHhc-cccccccCCCeEEEEEEcCCHHHHHHHHH--------H--------------cC
Confidence            3568999999999999988888764 20    11113544 67888776543210        0              00


Q ss_pred             hhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHh
Q 019978          116 YVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       116 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                                                     ..++.+|.++.+.  +.|+|++|+|.....+++.....
T Consensus        81 -------------------------------~~~~y~d~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~  118 (412)
T 4gqa_A           81 -------------------------------AEKAYGDWRELVNDPQVDVVDITSPNHLHYTMAMAAIA  118 (412)
T ss_dssp             -------------------------------CSEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHH
T ss_pred             -------------------------------CCeEECCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHH
Confidence                                           1245678888775  57999999999877766665443

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.32  E-value=0.0016  Score=61.59  Aligned_cols=34  Identities=18%  Similarity=0.439  Sum_probs=29.6

Q ss_pred             ceEEEEC-CCHHHHHHHHHHHHh--cCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVG-AGAWGSVFTAMLQDS--YGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIG-aG~mG~alA~~La~~--~G~~~~~~~V~l~~r~~   82 (333)
                      |||+|+| +|.+|.+++..|+.+  +.     .++.++|+++
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~-----~el~L~Di~~   37 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSG-----SELSLYDIAP   37 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTT-----EEEEEECSST
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCC-----ceEEEEecCC
Confidence            7999999 799999999999875  22     6899999987

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=97.31  E-value=0.0011  Score=63.15  Aligned_cols=80  Identities=14%  Similarity=0.140  Sum_probs=55.4

Q ss_pred             CCceEEEECCCHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~a-lA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      .++||+|||+|.||.. .+..+....+     .+|. +++++++++.+                         .++    
T Consensus         4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~-----~~l~av~d~~~~~~~~-------------------------~~~----   49 (362)
T 3fhl_A            4 EIIKTGLAAFGMSGQVFHAPFISTNPH-----FELYKIVERSKELSKE-------------------------RYP----   49 (362)
T ss_dssp             CCEEEEESCCSHHHHHTTHHHHHHCTT-----EEEEEEECSSCCGGGT-------------------------TCT----
T ss_pred             CceEEEEECCCHHHHHHHHHHHhhCCC-----eEEEEEEcCCHHHHHH-------------------------hCC----
Confidence            3579999999999997 5666655412     6654 78888764210                         011    


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHh
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~--aDlIIlaVps~~~~~vl~~i~~  182 (333)
                                                 .+.+.+|.++.+.+  .|+|++|+|.....+++.....
T Consensus        50 ---------------------------~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~   87 (362)
T 3fhl_A           50 ---------------------------QASIVRSFKELTEDPEIDLIVVNTPDNTHYEYAGMALE   87 (362)
T ss_dssp             ---------------------------TSEEESCSHHHHTCTTCCEEEECSCGGGHHHHHHHHHH
T ss_pred             ---------------------------CCceECCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHH
Confidence                                       24456788888765  8999999999877777665443

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=97.28  E-value=0.00058  Score=66.67  Aligned_cols=84  Identities=15%  Similarity=0.172  Sum_probs=54.9

Q ss_pred             CCceEEEECCCH---HHHHHHHHHHHhcCCCCCCeeEE--EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccch
Q 019978           42 DPLRIVGVGAGA---WGSVFTAMLQDSYGYLRDKVLIR--IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKY  116 (333)
Q Consensus        42 ~~~kI~IIGaG~---mG~alA~~La~~~G~~~~~~~V~--l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~  116 (333)
                      .++||+|||+|.   ||...+..+... +    +.+++  ++++++++++++..        .             +  +
T Consensus        36 ~~~rvgiiG~G~~~~ig~~h~~~~~~~-~----~~~lva~v~d~~~~~a~~~a~--------~-------------~--g   87 (417)
T 3v5n_A           36 KRIRLGMVGGGSGAFIGAVHRIAARLD-D----HYELVAGALSSTPEKAEASGR--------E-------------L--G   87 (417)
T ss_dssp             CCEEEEEESCC--CHHHHHHHHHHHHT-S----CEEEEEEECCSSHHHHHHHHH--------H-------------H--T
T ss_pred             CcceEEEEcCCCchHHHHHHHHHHhhC-C----CcEEEEEEeCCCHHHHHHHHH--------H-------------c--C
Confidence            357999999999   999988887766 4    15654  67888775543210        0             0  0


Q ss_pred             hhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC-------CCEEEEecCchhHHHHHHHHH
Q 019978          117 VEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD-------ADIVINGLPSTETKEVFEEIS  181 (333)
Q Consensus       117 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~-------aDlIIlaVps~~~~~vl~~i~  181 (333)
                               ++                   ...+.+|+++.+.+       .|+|++|+|.....+++....
T Consensus        88 ---------~~-------------------~~~~~~~~~~ll~~~~~~~~~vD~V~I~tp~~~H~~~~~~al  131 (417)
T 3v5n_A           88 ---------LD-------------------PSRVYSDFKEMAIREAKLKNGIEAVAIVTPNHVHYAAAKEFL  131 (417)
T ss_dssp             ---------CC-------------------GGGBCSCHHHHHHHHHHCTTCCSEEEECSCTTSHHHHHHHHH
T ss_pred             ---------CC-------------------cccccCCHHHHHhcccccCCCCcEEEECCCcHHHHHHHHHHH
Confidence                     00                   11245677777654       899999999987766666544

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.27  E-value=0.0021  Score=58.50  Aligned_cols=33  Identities=24%  Similarity=0.361  Sum_probs=30.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~   82 (333)
                      ++|.|||+|.+|+.++..|+.. |     . +++++|++.
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~-G-----v~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASA-G-----VGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-T-----CSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHc-C-----CCeEEEEcCCC
Confidence            6999999999999999999999 8     5 899999986

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=97.26  E-value=0.0011  Score=65.16  Aligned_cols=22  Identities=27%  Similarity=0.305  Sum_probs=19.2

Q ss_pred             CeEEecCHHHHhcCCCEEEEec
Q 019978          147 PLKVVTNLQEAVWDADIVINGL  168 (333)
Q Consensus       147 ~i~~t~d~~ea~~~aDlIIlaV  168 (333)
                      .++.++|..+++++||+||++.
T Consensus        60 ~v~~t~d~~~al~~AD~Viita   81 (417)
T 1up7_A           60 KVLISDTFEGAVVDAKYVIFQF   81 (417)
T ss_dssp             EEEECSSHHHHHTTCSEEEECC
T ss_pred             EEEEeCCHHHHhCCCCEEEEcC
Confidence            4677789888899999999988

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.25  E-value=0.00048  Score=63.87  Aligned_cols=64  Identities=16%  Similarity=0.298  Sum_probs=49.5

Q ss_pred             cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchhh
Q 019978           15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDR   87 (333)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~   87 (333)
                      +|-++.+|-...-=+.++++ .+..  ..++|.|+|+|.+|.+++..|++. |     . +|++|+|+.+++++
T Consensus        94 ~g~l~g~NTD~~G~~~~l~~-~~~~--~~~~vlvlGaGgaarav~~~L~~~-G-----~~~i~v~nRt~~ka~~  158 (271)
T 1npy_A           94 NGFLRAYNTDYIAIVKLIEK-YHLN--KNAKVIVHGSGGMAKAVVAAFKNS-G-----FEKLKIYARNVKTGQY  158 (271)
T ss_dssp             TTEEEEECHHHHHHHHHHHH-TTCC--TTSCEEEECSSTTHHHHHHHHHHT-T-----CCCEEEECSCHHHHHH
T ss_pred             CCEEEeecCCHHHHHHHHHH-hCCC--CCCEEEEECCcHHHHHHHHHHHHC-C-----CCEEEEEeCCHHHHHH
Confidence            56566677777666677765 3443  236899999999999999999998 7     5 79999999876543

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.24  E-value=0.00081  Score=63.47  Aligned_cols=36  Identities=19%  Similarity=0.371  Sum_probs=28.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCee-EEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~-V~l~~r~~~   83 (333)
                      ++||+|||+|+||..++..+.+. +    +.+ |.+++++++
T Consensus         3 ~irV~IiG~G~mG~~~~~~l~~~-~----~~elvav~d~~~~   39 (320)
T 1f06_A            3 NIRVAIVGYGNLGRSVEKLIAKQ-P----DMDLVGIFSRRAT   39 (320)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTC-S----SEEEEEEEESSSC
T ss_pred             CCEEEEEeecHHHHHHHHHHhcC-C----CCEEEEEEcCCHH
Confidence            47999999999999999998765 3    155 457888764

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.24  E-value=0.00045  Score=68.26  Aligned_cols=89  Identities=13%  Similarity=0.109  Sum_probs=61.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ++|+|+|.|.+|..+|..|... |     .+|++|++++......          .               .        
T Consensus       212 ktVgIiG~G~IG~~vA~~Lka~-G-----a~Viv~D~~p~~a~~A----------~---------------~--------  252 (436)
T 3h9u_A          212 KTACVCGYGDVGKGCAAALRGF-G-----ARVVVTEVDPINALQA----------A---------------M--------  252 (436)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHH----------H---------------H--------
T ss_pred             CEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEECCChhhhHHH----------H---------------H--------
Confidence            7999999999999999999887 8     8999999987432110          0               0        


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                .            .... .++++++..+|+|+++.....+-.  ++....+++   +++++.+..|
T Consensus       253 ----------~------------G~~~-~sL~eal~~ADVVilt~gt~~iI~--~e~l~~MK~---gAIVINvgRg  300 (436)
T 3h9u_A          253 ----------E------------GYQV-LLVEDVVEEAHIFVTTTGNDDIIT--SEHFPRMRD---DAIVCNIGHF  300 (436)
T ss_dssp             ----------T------------TCEE-CCHHHHTTTCSEEEECSSCSCSBC--TTTGGGCCT---TEEEEECSSS
T ss_pred             ----------h------------CCee-cCHHHHHhhCCEEEECCCCcCccC--HHHHhhcCC---CcEEEEeCCC
Confidence                      0            1222 478899999999998776543211  122333455   6788887766

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=97.22  E-value=0.0011  Score=62.23  Aligned_cols=37  Identities=14%  Similarity=0.036  Sum_probs=30.2

Q ss_pred             ceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEec--CCcc
Q 019978           44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRR--PGRS   84 (333)
Q Consensus        44 ~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~r--~~~~   84 (333)
                      |||+|+| +|.+|++++..|+.. |..   .++.++|+  ++++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~-~~~---~el~L~Di~~~~~~   40 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALR-DIA---DEVVFVDIPDKEDD   40 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCC---SEEEEECCGGGHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhC-CCC---CEEEEEcCCCChhh
Confidence            7999999 999999999999887 621   26899998  5543

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.22  E-value=0.00072  Score=63.06  Aligned_cols=65  Identities=17%  Similarity=0.164  Sum_probs=45.6

Q ss_pred             cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchhh
Q 019978           15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDR   87 (333)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~   87 (333)
                      +|-++-.|-.-.-=+.++++...  .-..+++.|+|+|.+|.+++..|++. |     . +|++++|+.+++++
T Consensus       101 ~g~l~G~NTD~~G~~~~l~~~~~--~l~~k~vlVlGaGG~g~aia~~L~~~-G-----~~~v~i~~R~~~~a~~  166 (283)
T 3jyo_A          101 TGHTTGHNTDVSGFGRGMEEGLP--NAKLDSVVQVGAGGVGNAVAYALVTH-G-----VQKLQVADLDTSRAQA  166 (283)
T ss_dssp             TSCEEEECHHHHHHHHHHHHHCT--TCCCSEEEEECCSHHHHHHHHHHHHT-T-----CSEEEEECSSHHHHHH
T ss_pred             CCeEEEecCCHHHHHHHHHHhCc--CcCCCEEEEECCcHHHHHHHHHHHHC-C-----CCEEEEEECCHHHHHH
Confidence            45455555444444445544221  22346999999999999999999998 8     6 79999999877654

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=97.20  E-value=0.0011  Score=63.44  Aligned_cols=94  Identities=13%  Similarity=0.105  Sum_probs=62.0

Q ss_pred             CceEEEECCCHHHH-HHHHHHHHhcCCCCCCee-EEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGaG~mG~-alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ++||+|||+|.+|. .++..+... +     .+ |-++++++++++++.         +             .+.     
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~~~~-~-----~~lvav~d~~~~~a~~~a---------~-------------~~~-----   72 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCLLRA-G-----ARLAGFHEKDDALAAEFS---------A-------------VYA-----   72 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHHHHT-T-----CEEEEEECSCHHHHHHHH---------H-------------HSS-----
T ss_pred             CcEEEEECcCHHHHHHHHHHhhcC-C-----cEEEEEEcCCHHHHHHHH---------H-------------HcC-----
Confidence            47999999999984 566666655 5     66 457888887554211         0             000     


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~--aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                                ...+.+|.++.+.+  .|+|++|+|.....+++.....   .   ++.|+ +-|
T Consensus        73 --------------------------~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~---a---GkhVl-~EK  119 (361)
T 3u3x_A           73 --------------------------DARRIATAEEILEDENIGLIVSAAVSSERAELAIRAMQ---H---GKDVL-VDK  119 (361)
T ss_dssp             --------------------------SCCEESCHHHHHTCTTCCEEEECCCHHHHHHHHHHHHH---T---TCEEE-EES
T ss_pred             --------------------------CCcccCCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHH---C---CCeEE-EeC
Confidence                                      13356788888764  8999999999887777765543   2   44443 566


Q ss_pred             cCcc
Q 019978          199 GVEA  202 (333)
Q Consensus       199 Gi~~  202 (333)
                      -+..
T Consensus       120 Pla~  123 (361)
T 3u3x_A          120 PGMT  123 (361)
T ss_dssp             CSCS
T ss_pred             CCCC
Confidence            5554

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=97.16  E-value=0.00078  Score=65.21  Aligned_cols=84  Identities=10%  Similarity=0.080  Sum_probs=56.2

Q ss_pred             CceEEEECCCH---HHHHHHHHHHHhcCCCCCCeeEE--EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchh
Q 019978           43 PLRIVGVGAGA---WGSVFTAMLQDSYGYLRDKVLIR--IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV  117 (333)
Q Consensus        43 ~~kI~IIGaG~---mG~alA~~La~~~G~~~~~~~V~--l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~  117 (333)
                      ++||+|||+|.   ||...+..+... +    +.+++  ++++++++++++..        +             +  + 
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~-~----~~~lva~v~d~~~~~a~~~a~--------~-------------~--g-   62 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRD-N----TFVLVAGAFDIDPIRGSAFGE--------Q-------------L--G-   62 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGG-G----SEEEEEEECCSSHHHHHHHHH--------H-------------T--T-
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhC-C----CeEEEEEEeCCCHHHHHHHHH--------H-------------h--C-
Confidence            47999999999   999998888766 3    15665  57888765543110        0             0  0 


Q ss_pred             hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC-------CCEEEEecCchhHHHHHHHHHh
Q 019978          118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD-------ADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~-------aDlIIlaVps~~~~~vl~~i~~  182 (333)
                              ++                   ...+.+|.++.+.+       .|+|++|+|.....+++.....
T Consensus        63 --------~~-------------------~~~~~~~~~~ll~~~~~~~~~vD~V~i~tp~~~H~~~~~~al~  107 (398)
T 3dty_A           63 --------VD-------------------SERCYADYLSMFEQEARRADGIQAVSIATPNGTHYSITKAALE  107 (398)
T ss_dssp             --------CC-------------------GGGBCSSHHHHHHHHTTCTTCCSEEEEESCGGGHHHHHHHHHH
T ss_pred             --------CC-------------------cceeeCCHHHHHhcccccCCCCCEEEECCCcHHHHHHHHHHHH
Confidence                    00                   11345778777654       8999999999877776665543

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=97.15  E-value=0.0032  Score=61.07  Aligned_cols=42  Identities=14%  Similarity=0.067  Sum_probs=31.5

Q ss_pred             CCceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           42 DPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        42 ~~~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      .++||+|+| +|.+|.+++..|+.. +.+.....+.|++.+.+.
T Consensus        31 ~~~KV~ViGAaG~VG~~la~~l~~~-~l~~e~~~l~L~d~d~~~   73 (375)
T 7mdh_A           31 KLVNIAVSGAAGMISNHLLFKLASG-EVFGQDQPIALKLLGSER   73 (375)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHT-TTTCTTCCEEEEEECCGG
T ss_pred             CCCEEEEECCCChHHHHHHHHHHcC-CcCCCCceeEEEecCccc
Confidence            467999999 799999999999987 644321247777766544

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=97.14  E-value=0.0028  Score=59.40  Aligned_cols=94  Identities=11%  Similarity=0.012  Sum_probs=63.9

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCee-EEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      .|+||+|||+ |.||...+..+... +     .+ |-+++++++... .         .+             ..+    
T Consensus         2 ~mirvgiIG~gG~i~~~h~~~l~~~-~-----~~lvav~d~~~~~~~-~---------~~-------------~~~----   48 (312)
T 3o9z_A            2 HMTRFALTGLAGYIAPRHLKAIKEV-G-----GVLVASLDPATNVGL-V---------DS-------------FFP----   48 (312)
T ss_dssp             -CCEEEEECTTSSSHHHHHHHHHHT-T-----CEEEEEECSSCCCGG-G---------GG-------------TCT----
T ss_pred             CceEEEEECCChHHHHHHHHHHHhC-C-----CEEEEEEcCCHHHHH-H---------Hh-------------hCC----
Confidence            4689999999 78999999999877 6     55 557888876421 0         00             011    


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh----------cCCCEEEEecCchhHHHHHHHHHhhhhccCC
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV----------WDADIVINGLPSTETKEVFEEISRYWKERIT  189 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~----------~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~  189 (333)
                                                 ...+.++.++.+          .+.|+|++|+|+....+++.....   .   
T Consensus        49 ---------------------------~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~~H~~~~~~al~---a---   95 (312)
T 3o9z_A           49 ---------------------------EAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNHLHYPQIRMALR---L---   95 (312)
T ss_dssp             ---------------------------TCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGGGHHHHHHHHHH---T---
T ss_pred             ---------------------------CCceeCCHHHHHHHhhhhcccCCCCcEEEECCCchhhHHHHHHHHH---C---
Confidence                                       245567777765          578999999999988777766554   2   


Q ss_pred             CCEEEEeeecCcc
Q 019978          190 VPVIISLAKGVEA  202 (333)
Q Consensus       190 ~~~Ivs~~kGi~~  202 (333)
                      ++.|+ +-|-+..
T Consensus        96 GkhVl-~EKPla~  107 (312)
T 3o9z_A           96 GANAL-SEKPLVL  107 (312)
T ss_dssp             TCEEE-ECSSSCS
T ss_pred             CCeEE-EECCCCC
Confidence            44444 5665554

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.12  E-value=0.00056  Score=66.56  Aligned_cols=40  Identities=15%  Similarity=0.147  Sum_probs=35.1

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      ...||+|+|+|.+|...++.+... |     .+|++|++++++++.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~l-G-----a~V~v~D~~~~~l~~  222 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRL-G-----AKTTGYDVRPEVAEQ  222 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHH-T-----CEEEEECSSGGGHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence            347999999999999999999887 8     899999999876543

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=97.10  E-value=0.0013  Score=62.67  Aligned_cols=79  Identities=24%  Similarity=0.215  Sum_probs=53.6

Q ss_pred             CCceEEEECCCHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~a-lA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      .++||+|||+|.||.. .+..+... .    +.+|. +++++++++.            +             .++    
T Consensus         4 ~~~rvgiiG~G~~g~~~~~~~l~~~-~----~~~l~av~d~~~~~~~------------~-------------~~~----   49 (358)
T 3gdo_A            4 DTIKVGILGYGLSGSVFHGPLLDVL-D----EYQISKIMTSRTEEVK------------R-------------DFP----   49 (358)
T ss_dssp             TCEEEEEECCSHHHHHTTHHHHTTC-T----TEEEEEEECSCHHHHH------------H-------------HCT----
T ss_pred             CcceEEEEccCHHHHHHHHHHHhhC-C----CeEEEEEEcCCHHHHH------------h-------------hCC----
Confidence            3589999999999996 56666543 2    26654 6777764311            0             010    


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHH
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS  181 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~  181 (333)
                                                 .+.+.+|+++.+.  +.|+|++|+|.....+++....
T Consensus        50 ---------------------------~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al   86 (358)
T 3gdo_A           50 ---------------------------DAEVVHELEEITNDPAIELVIVTTPSGLHYEHTMACI   86 (358)
T ss_dssp             ---------------------------TSEEESSTHHHHTCTTCCEEEECSCTTTHHHHHHHHH
T ss_pred             ---------------------------CCceECCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHH
Confidence                                       2445678888877  6899999999987776666544

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=97.10  E-value=0.003  Score=62.65  Aligned_cols=40  Identities=23%  Similarity=0.245  Sum_probs=30.9

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCee-EEEEecCCcchh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~   86 (333)
                      +++||+|||+|.||..++..+.+..+     .+ |-++++++++++
T Consensus        22 k~IRVGIIGaG~iG~~~~~~l~~~~~-----veLvAV~D~~~era~   62 (446)
T 3upl_A           22 KPIRIGLIGAGEMGTDIVTQVARMQG-----IEVGALSARRLPNTF   62 (446)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTSSS-----EEEEEEECSSTHHHH
T ss_pred             CceEEEEECChHHHHHHHHHHhhCCC-----cEEEEEEeCCHHHHH
Confidence            46899999999999999988865412     55 457888887654

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=97.09  E-value=0.00064  Score=68.26  Aligned_cols=91  Identities=12%  Similarity=0.094  Sum_probs=62.9

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .-++|+|||.|.+|..+|..+..- |     .+|++|++++....+           .              ..      
T Consensus       276 ~GktVgIIG~G~IG~~vA~~l~~~-G-----~~V~v~d~~~~~~~~-----------a--------------~~------  318 (494)
T 3d64_A          276 AGKIAVVAGYGDVGKGCAQSLRGL-G-----ATVWVTEIDPICALQ-----------A--------------AM------  318 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSCHHHHHH-----------H--------------HT------
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEEeCChHhHHH-----------H--------------HH------
Confidence            447999999999999999999877 7     899999998753210           0              00      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                  .            .+.+ .++++++..+|+|++++....+-.  ++....+++   ++++|.+..|
T Consensus       319 ------------~------------G~~~-~~l~ell~~aDiVi~~~~t~~lI~--~~~l~~MK~---gAilINvgrg  366 (494)
T 3d64_A          319 ------------E------------GYRV-VTMEYAADKADIFVTATGNYHVIN--HDHMKAMRH---NAIVCNIGHF  366 (494)
T ss_dssp             ------------T------------TCEE-CCHHHHTTTCSEEEECSSSSCSBC--HHHHHHCCT---TEEEEECSSS
T ss_pred             ------------c------------CCEe-CCHHHHHhcCCEEEECCCcccccC--HHHHhhCCC---CcEEEEcCCC
Confidence                        0            1222 368889999999999985443210  223334555   6788888766

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=97.09  E-value=0.00072  Score=67.65  Aligned_cols=91  Identities=16%  Similarity=0.099  Sum_probs=63.2

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .-++|+|||.|.+|..+|..+... |     .+|++|++++....+           .              ..      
T Consensus       256 ~GktVgIIG~G~IG~~vA~~l~~~-G-----~~Viv~d~~~~~~~~-----------a--------------~~------  298 (479)
T 1v8b_A          256 SGKIVVICGYGDVGKGCASSMKGL-G-----ARVYITEIDPICAIQ-----------A--------------VM------  298 (479)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSCHHHHHH-----------H--------------HT------
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhC-c-----CEEEEEeCChhhHHH-----------H--------------HH------
Confidence            447999999999999999999887 8     899999998753210           0              00      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                  .            .+.+ .++++++..+|+|++++....+-.  ++....+++   +++++.+..|
T Consensus       299 ------------~------------g~~~-~~l~ell~~aDiVi~~~~t~~lI~--~~~l~~MK~---gailiNvgrg  346 (479)
T 1v8b_A          299 ------------E------------GFNV-VTLDEIVDKGDFFITCTGNVDVIK--LEHLLKMKN---NAVVGNIGHF  346 (479)
T ss_dssp             ------------T------------TCEE-CCHHHHTTTCSEEEECCSSSSSBC--HHHHTTCCT---TCEEEECSST
T ss_pred             ------------c------------CCEe-cCHHHHHhcCCEEEECCChhhhcC--HHHHhhcCC---CcEEEEeCCC
Confidence                        0            1222 468888999999999975443211  122234565   7888888765

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=97.08  E-value=0.002  Score=61.08  Aligned_cols=35  Identities=11%  Similarity=0.220  Sum_probs=27.0

Q ss_pred             eEEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHh
Q 019978          148 LKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       148 i~~t~d~~ea~~~--aDlIIlaVps~~~~~vl~~i~~  182 (333)
                      +.+.+|+++.+.+  .|+|++|+|+....+++.....
T Consensus        51 ~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~   87 (349)
T 3i23_A           51 VNFTADLNELLTDPEIELITICTPAHTHYDLAKQAIL   87 (349)
T ss_dssp             CEEESCTHHHHSCTTCCEEEECSCGGGHHHHHHHHHH
T ss_pred             CeEECCHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence            4566888888775  8999999999877777665543

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=97.08  E-value=0.00085  Score=67.41  Aligned_cols=37  Identities=11%  Similarity=0.145  Sum_probs=32.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      -++|+|+|+|.+|..+|+.+... |     .+|++|+++++++
T Consensus       274 GktV~IiG~G~IG~~~A~~lka~-G-----a~Viv~d~~~~~~  310 (494)
T 3ce6_A          274 GKKVLICGYGDVGKGCAEAMKGQ-G-----ARVSVTEIDPINA  310 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHH
T ss_pred             cCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHH
Confidence            37999999999999999999887 8     8999999987643

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=97.07  E-value=0.0028  Score=62.22  Aligned_cols=87  Identities=18%  Similarity=0.134  Sum_probs=57.2

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeE-EEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .++||+|||+|.||...+..+... .    +.+| -++++++++++++..     .+.+             +  +    
T Consensus        19 ~~~rvgiIG~G~~g~~h~~~l~~~-~----~~~lvav~d~~~~~~~~~a~-----~~~~-------------~--g----   69 (444)
T 2ixa_A           19 KKVRIAFIAVGLRGQTHVENMARR-D----DVEIVAFADPDPYMVGRAQE-----ILKK-------------N--G----   69 (444)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTC-T----TEEEEEEECSCHHHHHHHHH-----HHHH-------------T--T----
T ss_pred             CCceEEEEecCHHHHHHHHHHHhC-C----CcEEEEEEeCCHHHHHHHHH-----HHHh-------------c--C----
Confidence            357999999999999998888764 2    2665 588888876543210     0000             0  0    


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEec----CHHHHhc--CCCEEEEecCchhHHHHHHHHH
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVT----NLQEAVW--DADIVINGLPSTETKEVFEEIS  181 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~----d~~ea~~--~aDlIIlaVps~~~~~vl~~i~  181 (333)
                           +                   ....+.+    |.++.++  +.|+|++|+|.....+++.+..
T Consensus        70 -----~-------------------~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~h~~~~~~al  112 (444)
T 2ixa_A           70 -----K-------------------KPAKVFGNGNDDYKNMLKDKNIDAVFVSSPWEWHHEHGVAAM  112 (444)
T ss_dssp             -----C-------------------CCCEEECSSTTTHHHHTTCTTCCEEEECCCGGGHHHHHHHHH
T ss_pred             -----C-------------------CCCceeccCCCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHH
Confidence                 0                   0133445    8888876  5899999999987766665543

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=97.06  E-value=0.0036  Score=58.85  Aligned_cols=81  Identities=14%  Similarity=0.033  Sum_probs=57.0

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCee-EEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      .|+||+|||+ |.||...+..+... +     .+ |-+++++++.. ..         .+             ..+    
T Consensus         2 ~mirvgiIG~gG~i~~~h~~~l~~~-~-----~~lvav~d~~~~~~-~~---------~~-------------~~~----   48 (318)
T 3oa2_A            2 HMKNFALIGAAGYIAPRHMRAIKDT-G-----NCLVSAYDINDSVG-II---------DS-------------ISP----   48 (318)
T ss_dssp             -CCEEEEETTTSSSHHHHHHHHHHT-T-----CEEEEEECSSCCCG-GG---------GG-------------TCT----
T ss_pred             CceEEEEECCCcHHHHHHHHHHHhC-C-----CEEEEEEcCCHHHH-HH---------Hh-------------hCC----
Confidence            4689999999 78999999999877 6     55 55788887642 10         00             011    


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-----------cCCCEEEEecCchhHHHHHHHHHh
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-----------WDADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~-----------~~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                                                 ...+.+|.++.+           .+.|+|++|+|+....+++.....
T Consensus        49 ---------------------------~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~~~H~~~~~~al~   95 (318)
T 3oa2_A           49 ---------------------------QSEFFTEFEFFLDHASNLKRDSATALDYVSICSPNYLHYPHIAAGLR   95 (318)
T ss_dssp             ---------------------------TCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCGGGHHHHHHHHHH
T ss_pred             ---------------------------CCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCcHHHHHHHHHHHH
Confidence                                       244567777655           468999999999887777766544

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=97.04  E-value=0.0033  Score=59.38  Aligned_cols=87  Identities=16%  Similarity=0.113  Sum_probs=59.2

Q ss_pred             CceEEEECCCHHHH-HHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGaG~mG~-alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ++||+|||+|.||. ..+..+... .    +.+|. +++++++..                                   
T Consensus        25 ~~rvgiiG~G~ig~~~~~~~l~~~-~----~~~lvav~d~~~~~~-----------------------------------   64 (330)
T 4ew6_A           25 PINLAIVGVGKIVRDQHLPSIAKN-A----NFKLVATASRHGTVE-----------------------------------   64 (330)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHHC-T----TEEEEEEECSSCCCT-----------------------------------
T ss_pred             CceEEEEecCHHHHHHHHHHHHhC-C----CeEEEEEEeCChhhc-----------------------------------
Confidence            47999999999998 688888765 2    15644 566665310                                   


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEee
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA  197 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~---aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~  197 (333)
                                                .+.+.+|.++.+.+   .|+|++|+|+....+++.....   .   ++.|+ +-
T Consensus        65 --------------------------g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~~~~~~al~---a---GkhVl-~E  111 (330)
T 4ew6_A           65 --------------------------GVNSYTTIEAMLDAEPSIDAVSLCMPPQYRYEAAYKALV---A---GKHVF-LE  111 (330)
T ss_dssp             --------------------------TSEEESSHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH---T---TCEEE-EC
T ss_pred             --------------------------CCCccCCHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHH---c---CCcEE-Ee
Confidence                                      23355778877654   8999999999887777766543   2   44554 56


Q ss_pred             ecCcc
Q 019978          198 KGVEA  202 (333)
Q Consensus       198 kGi~~  202 (333)
                      |-+..
T Consensus       112 KP~a~  116 (330)
T 4ew6_A          112 KPPGA  116 (330)
T ss_dssp             SSSCS
T ss_pred             CCCCC
Confidence            65543

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=97.03  E-value=0.003  Score=59.85  Aligned_cols=85  Identities=13%  Similarity=0.159  Sum_probs=52.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHh---cCCCCCCee-EEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDS---YGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~---~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      -||+|||+|.||..-+..+...   +... ++.+ |-++++++++++++.+        +              +.    
T Consensus        26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~-~~~~lvav~d~~~~~a~~~a~--------~--------------~g----   78 (393)
T 4fb5_A           26 LGIGLIGTGYMGKCHALAWNAVKTVFGDV-ERPRLVHLAEANAGLAEARAG--------E--------------FG----   78 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTHHHHHCSS-CCCEEEEEECC--TTHHHHHH--------H--------------HT----
T ss_pred             ccEEEEcCCHHHHHHHHHHHhhhhhhccC-CCcEEEEEECCCHHHHHHHHH--------H--------------hC----
Confidence            5899999999998776655331   0000 1134 4578998876643211        0              00    


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHh
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                                                 -.++.+|.++.+.  +.|+|++|+|+....+++.....
T Consensus        79 ---------------------------~~~~y~d~~ell~~~~iDaV~IatP~~~H~~~a~~al~  116 (393)
T 4fb5_A           79 ---------------------------FEKATADWRALIADPEVDVVSVTTPNQFHAEMAIAALE  116 (393)
T ss_dssp             ---------------------------CSEEESCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHH
T ss_pred             ---------------------------CCeecCCHHHHhcCCCCcEEEECCChHHHHHHHHHHHh
Confidence                                       1135688888775  57999999999877776665543

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.00  E-value=0.0012  Score=64.36  Aligned_cols=37  Identities=27%  Similarity=0.360  Sum_probs=33.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcch
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSV   85 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~   85 (333)
                      -++|+|+|+|.||.+++..+... |     . +|++++|+++++
T Consensus       167 g~~VlIiGaG~iG~~~a~~l~~~-G-----~~~V~v~~r~~~ra  204 (404)
T 1gpj_A          167 DKTVLVVGAGEMGKTVAKSLVDR-G-----VRAVLVANRTYERA  204 (404)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHH-C-----CSEEEEECSSHHHH
T ss_pred             CCEEEEEChHHHHHHHHHHHHHC-C-----CCEEEEEeCCHHHH
Confidence            36999999999999999999988 8     7 899999987654

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=96.99  E-value=0.0059  Score=56.94  Aligned_cols=94  Identities=18%  Similarity=0.212  Sum_probs=68.2

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ..+||+|+|+ |.||..++..+.+. |     ++ .++..++....                         ...      
T Consensus         6 ~~~~VaVvGasG~~G~~~~~~l~~~-g-----~~-~v~~VnP~~~g-------------------------~~i------   47 (288)
T 1oi7_A            6 RETRVLVQGITGREGQFHTKQMLTY-G-----TK-IVAGVTPGKGG-------------------------MEV------   47 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHH-T-----CE-EEEEECTTCTT-------------------------CEE------
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHc-C-----Ce-EEEEECCCCCC-------------------------ceE------
Confidence            4579999998 99999999999887 7     67 45565553210                         000      


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                               ..+.+..+++++.+  ++|++++++|+....+++++.... +    -..+|.++.
T Consensus        48 -------------------------~G~~vy~sl~el~~~~~~Dv~Ii~vp~~~~~~~~~ea~~~-G----i~~vVi~t~   97 (288)
T 1oi7_A           48 -------------------------LGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALEAAHA-G----IPLIVLITE   97 (288)
T ss_dssp             -------------------------TTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHHHHHHHT-T----CSEEEECCS
T ss_pred             -------------------------CCEEeeCCHHHHhhcCCCCEEEEecCHHHHHHHHHHHHHC-C----CCEEEEECC
Confidence                                     13556677888777  899999999999999999887652 1    234666788


Q ss_pred             cCccc
Q 019978          199 GVEAE  203 (333)
Q Consensus       199 Gi~~~  203 (333)
                      |+...
T Consensus        98 G~~~~  102 (288)
T 1oi7_A           98 GIPTL  102 (288)
T ss_dssp             CCCHH
T ss_pred             CCCHH
Confidence            88753

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=96.99  E-value=0.0013  Score=64.65  Aligned_cols=84  Identities=14%  Similarity=0.116  Sum_probs=57.7

Q ss_pred             CCceEEEECC----CHHHHHHHHHHHHh-cCCCCCCeeE-EEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccc
Q 019978           42 DPLRIVGVGA----GAWGSVFTAMLQDS-YGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLK  115 (333)
Q Consensus        42 ~~~kI~IIGa----G~mG~alA~~La~~-~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~  115 (333)
                      .++||+|||+    |.||...+..|.+. .+     .+| -++++++++++++.         +.            +  
T Consensus        19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~-----~~lvav~d~~~~~~~~~a---------~~------------~--   70 (438)
T 3btv_A           19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQ-----FQITALYSPKIETSIATI---------QR------------L--   70 (438)
T ss_dssp             CCEEEEEESCCTTSSSTTTTHHHHHHHTTTT-----EEEEEEECSSHHHHHHHH---------HH------------T--
T ss_pred             CCCEEEEEcccCCCChHHHHHHHHHHhcCCC-----eEEEEEEeCCHHHHHHHH---------HH------------c--
Confidence            4579999999    99999999998764 23     665 57888876543211         00            0  


Q ss_pred             hhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHH
Q 019978          116 YVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS  181 (333)
Q Consensus       116 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~  181 (333)
                      +         .                   ..+.+.+|+++.+.  +.|+|++|+|.....+++....
T Consensus        71 g---------~-------------------~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al  110 (438)
T 3btv_A           71 K---------L-------------------SNATAFPTLESFASSSTIDMIVIAIQVASHYEVVMPLL  110 (438)
T ss_dssp             T---------C-------------------TTCEEESSHHHHHHCSSCSEEEECSCHHHHHHHHHHHH
T ss_pred             C---------C-------------------CcceeeCCHHHHhcCCCCCEEEEeCCcHHHHHHHHHHH
Confidence            0         0                   02346678888775  6899999999987666665543

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=96.96  E-value=0.0026  Score=63.08  Aligned_cols=34  Identities=18%  Similarity=0.115  Sum_probs=30.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ++|+|+|.|.+|..+|..+..- |     .+|+++++++.
T Consensus       248 KTVgVIG~G~IGr~vA~~lraf-G-----a~Viv~d~dp~  281 (464)
T 3n58_A          248 KVAVVCGYGDVGKGSAQSLAGA-G-----ARVKVTEVDPI  281 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHC-C-----CEEEEEeCCcc
Confidence            7999999999999999999877 8     89999998874

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=96.95  E-value=0.00093  Score=63.76  Aligned_cols=93  Identities=24%  Similarity=0.249  Sum_probs=63.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ++|+|||.|.+|..+|..+..- |     .+|..|++......           .+               .        
T Consensus       142 ~tvGIiG~G~IG~~va~~~~~f-g-----~~v~~~d~~~~~~~-----------~~---------------~--------  181 (334)
T 3kb6_A          142 LTLGVIGTGRIGSRVAMYGLAF-G-----MKVLCYDVVKREDL-----------KE---------------K--------  181 (334)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCHHH-----------HH---------------T--------
T ss_pred             cEEEEECcchHHHHHHHhhccc-C-----ceeeecCCccchhh-----------hh---------------c--------
Confidence            6899999999999999998776 7     89999998653110           00               0        


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecCc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                             .+. ..++++.+..||+|++.+|-. .++.++ ++.-..+++   ++++|.++-|=.
T Consensus       182 -----------------------~~~-~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~---~a~lIN~aRG~i  234 (334)
T 3kb6_A          182 -----------------------GCV-YTSLDELLKESDVISLHVPYTKETHHMINEERISLMKD---GVYLINTARGKV  234 (334)
T ss_dssp             -----------------------TCE-ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCT---TEEEEECSCGGG
T ss_pred             -----------------------Cce-ecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCC---CeEEEecCcccc
Confidence                                   122 246788899999999999954 233222 112233455   788999888744


Q ss_pred             cc
Q 019978          202 AE  203 (333)
Q Consensus       202 ~~  203 (333)
                      ..
T Consensus       235 Vd  236 (334)
T 3kb6_A          235 VD  236 (334)
T ss_dssp             BC
T ss_pred             cc
Confidence            43

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.95  E-value=0.0006  Score=65.92  Aligned_cols=39  Identities=18%  Similarity=0.279  Sum_probs=34.1

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ..++|+|+|+|.+|.+++..+... |     .+|++|++++++++
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~-G-----a~V~~~d~~~~~l~  205 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGM-G-----ATVTVLDINIDKLR  205 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHH
Confidence            347999999999999999999887 8     89999999986543

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=96.94  E-value=0.0026  Score=63.47  Aligned_cols=84  Identities=18%  Similarity=0.166  Sum_probs=57.7

Q ss_pred             CCceEEEECC----CHHHHHHHHHHHHh-cCCCCCCeeE-EEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccc
Q 019978           42 DPLRIVGVGA----GAWGSVFTAMLQDS-YGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLK  115 (333)
Q Consensus        42 ~~~kI~IIGa----G~mG~alA~~La~~-~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~  115 (333)
                      .++||+|||+    |.||...+..|... .+     .+| -++++++++++++.         +.            +  
T Consensus        38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~-----~~lvav~d~~~~~a~~~a---------~~------------~--   89 (479)
T 2nvw_A           38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQ-----FQIVALYNPTLKSSLQTI---------EQ------------L--   89 (479)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTT-----EEEEEEECSCHHHHHHHH---------HH------------T--
T ss_pred             CcCEEEEEcccCCCCHHHHHHHHHHHhcCCC-----eEEEEEEeCCHHHHHHHH---------HH------------c--
Confidence            4589999999    99999999998763 13     665 47888876543211         00            0  


Q ss_pred             hhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHH
Q 019978          116 YVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS  181 (333)
Q Consensus       116 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~  181 (333)
                      +         .                   ..+.+.+|.++.+.  +.|+|++|+|.....+++....
T Consensus        90 g---------~-------------------~~~~~~~d~~ell~~~~vD~V~I~tp~~~H~~~~~~al  129 (479)
T 2nvw_A           90 Q---------L-------------------KHATGFDSLESFAQYKDIDMIVVSVKVPEHYEVVKNIL  129 (479)
T ss_dssp             T---------C-------------------TTCEEESCHHHHHHCTTCSEEEECSCHHHHHHHHHHHH
T ss_pred             C---------C-------------------CcceeeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHH
Confidence            0         0                   02346688888775  6899999999987666665543

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=96.94  E-value=0.0067  Score=56.82  Aligned_cols=97  Identities=13%  Similarity=0.157  Sum_probs=68.8

Q ss_pred             CCCCCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchh
Q 019978           39 AEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV  117 (333)
Q Consensus        39 ~~~~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~  117 (333)
                      .-....+|+|+|+ |.||..++..+.+. |     ++ .++..++....                         ...   
T Consensus         9 l~~~~~~vvV~Gasg~~G~~~~~~l~~~-g-----~~-~v~~VnP~~~g-------------------------~~i---   53 (297)
T 2yv2_A            9 LVDSETRVLVQGITGREGSFHAKAMLEY-G-----TK-VVAGVTPGKGG-------------------------SEV---   53 (297)
T ss_dssp             CCSTTCEEEEETTTSHHHHHHHHHHHHH-T-----CE-EEEEECTTCTT-------------------------CEE---
T ss_pred             hhCCCCEEEEECCCCCHHHHHHHHHHhC-C-----Cc-EEEEeCCCCCC-------------------------ceE---
Confidence            3334568889998 99999999999887 7     67 56666664210                         000   


Q ss_pred             hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--C-CCEEEEecCchhHHHHHHHHHhhhhccCCCCEEE
Q 019978          118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--D-ADIVINGLPSTETKEVFEEISRYWKERITVPVII  194 (333)
Q Consensus       118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~-aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Iv  194 (333)
                                                  ..+.+..+++++.+  . +|++++++|+....+++++.... +    -..+|
T Consensus        54 ----------------------------~G~~vy~sl~el~~~~~~~DvaIi~vp~~~~~~~v~ea~~~-G----i~~vV  100 (297)
T 2yv2_A           54 ----------------------------HGVPVYDSVKEALAEHPEINTSIVFVPAPFAPDAVYEAVDA-G----IRLVV  100 (297)
T ss_dssp             ----------------------------TTEEEESSHHHHHHHCTTCCEEEECCCGGGHHHHHHHHHHT-T----CSEEE
T ss_pred             ----------------------------CCEeeeCCHHHHhhcCCCCCEEEEecCHHHHHHHHHHHHHC-C----CCEEE
Confidence                                        13556677887765  5 99999999999999999987753 1    23466


Q ss_pred             EeeecCccc
Q 019978          195 SLAKGVEAE  203 (333)
Q Consensus       195 s~~kGi~~~  203 (333)
                      .++.|+..+
T Consensus       101 i~t~G~~~~  109 (297)
T 2yv2_A          101 VITEGIPVH  109 (297)
T ss_dssp             ECCCCCCHH
T ss_pred             EECCCCCHH
Confidence            678898753

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=96.93  E-value=0.0031  Score=51.60  Aligned_cols=89  Identities=15%  Similarity=0.081  Sum_probs=61.1

Q ss_pred             CCceEEEECC----CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchh
Q 019978           42 DPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV  117 (333)
Q Consensus        42 ~~~kI~IIGa----G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~  117 (333)
                      .+++|+|||+    +.+|..+...|.+. |     ++|+.++...+.+.                               
T Consensus         3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~-g-----~~V~pVnP~~~~i~-------------------------------   45 (122)
T 3ff4_A            3 AMKKTLILGATPETNRYAYLAAERLKSH-G-----HEFIPVGRKKGEVL-------------------------------   45 (122)
T ss_dssp             CCCCEEEETCCSCTTSHHHHHHHHHHHH-T-----CCEEEESSSCSEET-------------------------------
T ss_pred             CCCEEEEEccCCCCCCHHHHHHHHHHHC-C-----CeEEEECCCCCcCC-------------------------------
Confidence            5679999998    67999999999998 8     77766655433211                               


Q ss_pred             hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEee
Q 019978          118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA  197 (333)
Q Consensus       118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~  197 (333)
                                                   ...+..++.+.=+ .|++++++|+..+.++++++... +-    . .+.++
T Consensus        46 -----------------------------G~~~y~sl~dlp~-vDlavi~~p~~~v~~~v~e~~~~-g~----k-~v~~~   89 (122)
T 3ff4_A           46 -----------------------------GKTIINERPVIEG-VDTVTLYINPQNQLSEYNYILSL-KP----K-RVIFN   89 (122)
T ss_dssp             -----------------------------TEECBCSCCCCTT-CCEEEECSCHHHHGGGHHHHHHH-CC----S-EEEEC
T ss_pred             -----------------------------CeeccCChHHCCC-CCEEEEEeCHHHHHHHHHHHHhc-CC----C-EEEEC
Confidence                                         1112222222223 79999999999999999998763 21    2 35578


Q ss_pred             ecCccc
Q 019978          198 KGVEAE  203 (333)
Q Consensus       198 kGi~~~  203 (333)
                      .|+..+
T Consensus        90 ~G~~~~   95 (122)
T 3ff4_A           90 PGTENE   95 (122)
T ss_dssp             TTCCCH
T ss_pred             CCCChH
Confidence            887643

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=96.91  E-value=0.0076  Score=56.73  Aligned_cols=94  Identities=17%  Similarity=0.186  Sum_probs=67.9

Q ss_pred             CCceEEEE-CC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           42 DPLRIVGV-GA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        42 ~~~kI~II-Ga-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      ++.+++|| |+ |.+|...+..+.+. |     ++ .+|..++....+                         ..     
T Consensus        12 ~~~siaVV~Gasg~~G~~~~~~l~~~-G-----~~-~v~~VnP~~~g~-------------------------~i-----   54 (305)
T 2fp4_A           12 DKNTKVICQGFTGKQGTFHSQQALEY-G-----TN-LVGGTTPGKGGK-------------------------TH-----   54 (305)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHH-T-----CE-EEEEECTTCTTC-------------------------EE-----
T ss_pred             CCCcEEEEECCCCCHHHHHHHHHHHC-C-----Cc-EEEEeCCCcCcc-------------------------eE-----
Confidence            34578888 98 99999999999888 8     77 556666642100                         00     


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEee
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA  197 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~  197 (333)
                                                ..+.+..+++++.+  ..|+++++||+....+++++.... .    -..++.++
T Consensus        55 --------------------------~G~~vy~sl~el~~~~~vD~avI~vP~~~~~~~~~e~i~~-G----i~~iv~~t  103 (305)
T 2fp4_A           55 --------------------------LGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDA-E----VPLVVCIT  103 (305)
T ss_dssp             --------------------------TTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHT-T----CSEEEECC
T ss_pred             --------------------------CCeeeechHHHhhhcCCCCEEEEecCHHHHHHHHHHHHHC-C----CCEEEEEC
Confidence                                      13556667777777  899999999999999999987653 1    24567788


Q ss_pred             ecCccc
Q 019978          198 KGVEAE  203 (333)
Q Consensus       198 kGi~~~  203 (333)
                      .|+...
T Consensus       104 ~G~~~~  109 (305)
T 2fp4_A          104 EGIPQQ  109 (305)
T ss_dssp             CCCCHH
T ss_pred             CCCChH
Confidence            888653

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.91  E-value=0.0013  Score=61.10  Aligned_cols=39  Identities=21%  Similarity=0.352  Sum_probs=35.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      .+++.|+|+|.+|.+++..|++. |     .+|++|+|+++++++
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~-G-----~~v~V~nRt~~ka~~  156 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQ-G-----LQVSVLNRSSRGLDF  156 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCTTHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence            47999999999999999999998 8     899999999987654

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=96.90  E-value=0.003  Score=63.79  Aligned_cols=111  Identities=23%  Similarity=0.231  Sum_probs=67.4

Q ss_pred             HhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHH
Q 019978           27 ERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRR  106 (333)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~  106 (333)
                      +.+..+....+..... ++|.|+|+|.+|..+|..|.+. |     ++|++++.+++.++++.                 
T Consensus       333 ~~l~~~~~~~~~~~~~-~~viIiG~G~~G~~la~~L~~~-g-----~~v~vid~d~~~~~~~~-----------------  388 (565)
T 4gx0_A          333 SQLAALEYLIGEAPED-ELIFIIGHGRIGCAAAAFLDRK-P-----VPFILIDRQESPVCNDH-----------------  388 (565)
T ss_dssp             --------------CC-CCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSCCSSCCSS-----------------
T ss_pred             HHHHHHHHHhcCCCCC-CCEEEECCCHHHHHHHHHHHHC-C-----CCEEEEECChHHHhhcC-----------------
Confidence            3455566666655544 8999999999999999999998 8     99999999998765321                 


Q ss_pred             hhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHH-HhcCCCEEEEecCchhHHHHHHHHHhhhh
Q 019978          107 LIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE-AVWDADIVINGLPSTETKEVFEEISRYWK  185 (333)
Q Consensus       107 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~e-a~~~aDlIIlaVps~~~~~vl~~i~~~l~  185 (333)
                           ....      ++..                     .   ...+++ -+++||.+|++++++...-.+..+++.+.
T Consensus       389 -----~~i~------gD~t---------------------~---~~~L~~agi~~ad~vi~~~~~d~~ni~~~~~ak~l~  433 (565)
T 4gx0_A          389 -----VVVY------GDAT---------------------V---GQTLRQAGIDRASGIIVTTNDDSTNIFLTLACRHLH  433 (565)
T ss_dssp             -----CEEE------SCSS---------------------S---STHHHHHTTTSCSEEEECCSCHHHHHHHHHHHHHHC
T ss_pred             -----CEEE------eCCC---------------------C---HHHHHhcCccccCEEEEECCCchHHHHHHHHHHHHC
Confidence                 0111      1100                     0   011222 36799999999999876666666666666


Q ss_pred             ccCCCCEEEEeeec
Q 019978          186 ERITVPVIISLAKG  199 (333)
Q Consensus       186 ~~~~~~~Ivs~~kG  199 (333)
                      +   +..++.-.+.
T Consensus       434 ~---~~~iiar~~~  444 (565)
T 4gx0_A          434 S---HIRIVARANG  444 (565)
T ss_dssp             S---SSEEEEEESS
T ss_pred             C---CCEEEEEECC
Confidence            5   4466665543

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.88  E-value=0.0018  Score=64.59  Aligned_cols=38  Identities=11%  Similarity=0.128  Sum_probs=32.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +||.|+|+|.+|.+++..|++. +    +++|++++|++++++
T Consensus        24 k~VlIiGAGgiG~aia~~L~~~-~----g~~V~v~~R~~~ka~   61 (467)
T 2axq_A           24 KNVLLLGSGFVAQPVIDTLAAN-D----DINVTVACRTLANAQ   61 (467)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTS-T----TEEEEEEESSHHHHH
T ss_pred             CEEEEECChHHHHHHHHHHHhC-C----CCeEEEEECCHHHHH
Confidence            6899999999999999999986 4    278999999987654

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=96.88  E-value=0.0032  Score=59.98  Aligned_cols=40  Identities=13%  Similarity=0.309  Sum_probs=31.0

Q ss_pred             CCceEEEEC-CCHHHHHHHHHHHHhcCCCCC--CeeEEEEecCC
Q 019978           42 DPLRIVGVG-AGAWGSVFTAMLQDSYGYLRD--KVLIRIWRRPG   82 (333)
Q Consensus        42 ~~~kI~IIG-aG~mG~alA~~La~~~G~~~~--~~~V~l~~r~~   82 (333)
                      .++||+|+| +|.+|+.++..|+.. |.+..  ...+.++|+++
T Consensus         2 ~~~kV~V~GaaG~VG~~la~~L~~~-~~~~e~~~~~l~L~Di~~   44 (333)
T 5mdh_A            2 EPIRVLVTGAAGQIAYSLLYSIGNG-SVFGKDQPIILVLLDITP   44 (333)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTT-TTTCTTCCEEEEEECCGG
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhC-CCccccCCCEEEEEeCCC
Confidence            468999999 799999999999987 63210  02389999975

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=96.88  E-value=0.00087  Score=64.89  Aligned_cols=73  Identities=14%  Similarity=0.177  Sum_probs=47.7

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .+.||+|||+| ||...+..+.+. .   ++.++. ++++++++++++.         +.            |       
T Consensus         6 ~~~rv~VvG~G-~g~~h~~a~~~~-~---~~~elvav~~~~~~~a~~~a---------~~------------~-------   52 (372)
T 4gmf_A            6 PKQRVLIVGAK-FGEMYLNAFMQP-P---EGLELVGLLAQGSARSRELA---------HA------------F-------   52 (372)
T ss_dssp             -CEEEEEECST-TTHHHHHTTSSC-C---TTEEEEEEECCSSHHHHHHH---------HH------------T-------
T ss_pred             CCCEEEEEehH-HHHHHHHHHHhC-C---CCeEEEEEECCCHHHHHHHH---------HH------------h-------
Confidence            45799999999 898877776543 1   125644 7899887654321         00            0       


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhH
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTET  173 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~  173 (333)
                                                ++...+|.++.+++.|+++++||+...
T Consensus        53 --------------------------gv~~~~~~~~l~~~~D~v~i~~p~~~h   79 (372)
T 4gmf_A           53 --------------------------GIPLYTSPEQITGMPDIACIVVRSTVA   79 (372)
T ss_dssp             --------------------------TCCEESSGGGCCSCCSEEEECCC--CT
T ss_pred             --------------------------CCCEECCHHHHhcCCCEEEEECCCccc
Confidence                                      233457788888889999999997643

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.88  E-value=0.00096  Score=64.18  Aligned_cols=39  Identities=18%  Similarity=0.305  Sum_probs=34.3

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ..++|+|+|+|.+|.+++..+... |     .+|++++|++++++
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~-G-----a~V~~~d~~~~~~~  203 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGM-G-----AQVTILDVNHKRLQ  203 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHH
Confidence            348999999999999999999988 8     89999999986543

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=96.83  E-value=0.0038  Score=59.05  Aligned_cols=85  Identities=16%  Similarity=0.106  Sum_probs=54.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCC---CCCCeeE-EEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGY---LRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~---~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      .||+|||+|.||...+..+... ..   +..+.+| -+++++++++++..         +.             +.    
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~-~~~~~~~~~~~l~av~d~~~~~a~~~a---------~~-------------~g----   59 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSA-PRFFDLPLHPDLNVLCGRDAEAVRAAA---------GK-------------LG----   59 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHH-HHHSCCSSEEEEEEEECSSHHHHHHHH---------HH-------------HT----
T ss_pred             CcEEEEcCCHHHHHHHHHHHhC-ccccccccCceEEEEEcCCHHHHHHHH---------HH-------------cC----
Confidence            4899999999999888877654 20   0111244 47788877654321         00             00    


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHh
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                                                 -..+.+|.++.+.  +.|+|++|+|.....+++.....
T Consensus        60 ---------------------------~~~~~~d~~~ll~~~~iDaV~I~tP~~~H~~~~~~al~   97 (390)
T 4h3v_A           60 ---------------------------WSTTETDWRTLLERDDVQLVDVCTPGDSHAEIAIAALE   97 (390)
T ss_dssp             ---------------------------CSEEESCHHHHTTCTTCSEEEECSCGGGHHHHHHHHHH
T ss_pred             ---------------------------CCcccCCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHH
Confidence                                       1135678888775  47999999999877766665443

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=96.78  E-value=0.0086  Score=55.99  Aligned_cols=94  Identities=17%  Similarity=0.193  Sum_probs=68.4

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ...+|+|+|+ |.||..++..+.+. |     ++ .+|..++....                         ...      
T Consensus        12 ~~~~v~V~Gasg~~G~~~~~~l~~~-g-----~~-~V~~VnP~~~g-------------------------~~i------   53 (294)
T 2yv1_A           12 ENTKAIVQGITGRQGSFHTKKMLEC-G-----TK-IVGGVTPGKGG-------------------------QNV------   53 (294)
T ss_dssp             TTCCEEEETTTSHHHHHHHHHHHHT-T-----CC-EEEEECTTCTT-------------------------CEE------
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHhC-C-----Ce-EEEEeCCCCCC-------------------------ceE------
Confidence            3458899998 99999999999887 7     66 56666664210                         000      


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                               ..+.+..+++++.+  ++|++++++|+....+++++.... +    -..+|.++.
T Consensus        54 -------------------------~G~~vy~sl~el~~~~~~Dv~ii~vp~~~~~~~v~ea~~~-G----i~~vVi~t~  103 (294)
T 2yv1_A           54 -------------------------HGVPVFDTVKEAVKETDANASVIFVPAPFAKDAVFEAIDA-G----IELIVVITE  103 (294)
T ss_dssp             -------------------------TTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHT-T----CSEEEECCS
T ss_pred             -------------------------CCEeeeCCHHHHhhcCCCCEEEEccCHHHHHHHHHHHHHC-C----CCEEEEECC
Confidence                                     13556678888777  899999999999999999887753 1    234666788


Q ss_pred             cCccc
Q 019978          199 GVEAE  203 (333)
Q Consensus       199 Gi~~~  203 (333)
                      |+...
T Consensus       104 G~~~~  108 (294)
T 2yv1_A          104 HIPVH  108 (294)
T ss_dssp             CCCHH
T ss_pred             CCCHH
Confidence            98753

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=96.77  E-value=0.0025  Score=60.96  Aligned_cols=32  Identities=13%  Similarity=0.209  Sum_probs=23.6

Q ss_pred             EecCHHHHhcC--CCEEEEecCchhHHHHHHHHH
Q 019978          150 VVTNLQEAVWD--ADIVINGLPSTETKEVFEEIS  181 (333)
Q Consensus       150 ~t~d~~ea~~~--aDlIIlaVps~~~~~vl~~i~  181 (333)
                      +.+|+++.+.+  .|+|++|+|.....+++....
T Consensus        71 ~~~~~~~ll~~~~iD~V~i~tp~~~h~~~~~~al  104 (383)
T 3oqb_A           71 WTTDLDAALADKNDTMFFDAATTQARPGLLTQAI  104 (383)
T ss_dssp             EESCHHHHHHCSSCCEEEECSCSSSSHHHHHHHH
T ss_pred             ccCCHHHHhcCCCCCEEEECCCchHHHHHHHHHH
Confidence            45788887754  899999999876666555443

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.77  E-value=0.0015  Score=64.39  Aligned_cols=34  Identities=21%  Similarity=0.210  Sum_probs=31.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ++|+|+|+|.+|..+|..+... |     .+|+++++++.
T Consensus       221 ktV~ViG~G~IGk~vA~~Lra~-G-----a~Viv~D~dp~  254 (435)
T 3gvp_A          221 KQVVVCGYGEVGKGCCAALKAM-G-----SIVYVTEIDPI  254 (435)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEEeCChh
Confidence            6999999999999999999877 8     89999999874

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.75  E-value=0.0022  Score=62.78  Aligned_cols=40  Identities=18%  Similarity=0.175  Sum_probs=34.8

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      ...||+|+|+|.+|...+..+..- |     .+|++|++++++++.
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~l-G-----a~V~v~D~~~~~l~~  228 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRL-G-----AVVSATDVRPAAKEQ  228 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSTTHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHHH
Confidence            357999999999999999999887 8     899999999976543

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=96.71  E-value=0.0037  Score=59.43  Aligned_cols=104  Identities=18%  Similarity=0.160  Sum_probs=60.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHh--------cCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDS--------YGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAY  113 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~--------~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~  113 (333)
                      |+||+|||+|.||+.++..+.++        .+     .+|. +++++++..+++.   +.++....            +
T Consensus         2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~-----~~lvaV~d~~~~~~~~id---~~~~~~~~------------~   61 (327)
T 3do5_A            2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGE-----FKVTAVADSKSSISGDFS---LVEALRMK------------R   61 (327)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCC-----EEEEEEECSSCEEESSCC---HHHHHHHH------------H
T ss_pred             cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCC-----EEEEEEEeCChHhccccC---HHHHHhhh------------c
Confidence            68999999999999999998764        12     5544 6677766543211   00011100            0


Q ss_pred             cchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhH-HHHHHHHHhhhhccCCC
Q 019978          114 LKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTET-KEVFEEISRYWKERITV  190 (333)
Q Consensus       114 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~-~~vl~~i~~~l~~~~~~  190 (333)
                       +.                             ..+....|+++.++  +.|+|+.|+|+... .+..+.+...+..   +
T Consensus        62 -~~-----------------------------~~~~~~~d~~~ll~~~~iDvVv~~tp~~~h~~~a~~~~~~aL~a---G  108 (327)
T 3do5_A           62 -ET-----------------------------GMLRDDAKAIEVVRSADYDVLIEASVTRVDGGEGVNYIREALKR---G  108 (327)
T ss_dssp             -HH-----------------------------SSCSBCCCHHHHHHHSCCSEEEECCCCC----CHHHHHHHHHTT---T
T ss_pred             -cC-----------------------------ccccCCCCHHHHhcCCCCCEEEECCCCcccchhHHHHHHHHHHC---C
Confidence             00                             01110237777664  58999999998742 1244444555555   6


Q ss_pred             CEEEEeeec
Q 019978          191 PVIISLAKG  199 (333)
Q Consensus       191 ~~Ivs~~kG  199 (333)
                      +.|++..|+
T Consensus       109 khVv~~NKk  117 (327)
T 3do5_A          109 KHVVTSNKG  117 (327)
T ss_dssp             CEEEECCSH
T ss_pred             CeEEecCch
Confidence            778877665

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.70  E-value=0.002  Score=62.78  Aligned_cols=42  Identities=17%  Similarity=0.203  Sum_probs=33.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      |+||+|+|+|.+|..++..|++. |.+.  .+|.+++|+.+++++
T Consensus         1 M~kVlIiGaGgiG~~ia~~L~~~-g~~~--~~V~v~~r~~~~~~~   42 (405)
T 4ina_A            1 MAKVLQIGAGGVGGVVAHKMAMN-REVF--SHITLASRTLSKCQE   42 (405)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTC-TTTC--CEEEEEESCHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCCc--eEEEEEECCHHHHHH
Confidence            47999999999999999999988 6100  289999999876654

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.69  E-value=0.0042  Score=54.19  Aligned_cols=38  Identities=24%  Similarity=0.309  Sum_probs=32.7

Q ss_pred             Cce-EEEECC-CHHHHHHHHHHH-HhcCCCCCCeeEEEEecCCc-chh
Q 019978           43 PLR-IVGVGA-GAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGR-SVD   86 (333)
Q Consensus        43 ~~k-I~IIGa-G~mG~alA~~La-~~~G~~~~~~~V~l~~r~~~-~~~   86 (333)
                      ||| |.|.|+ |.+|.+++..|+ +. |     ++|++++|+++ .++
T Consensus         4 mmk~vlVtGasg~iG~~~~~~l~~~~-g-----~~V~~~~r~~~~~~~   45 (221)
T 3r6d_A            4 MYXYITILGAAGQIAQXLTATLLTYT-D-----MHITLYGRQLKTRIP   45 (221)
T ss_dssp             SCSEEEEESTTSHHHHHHHHHHHHHC-C-----CEEEEEESSHHHHSC
T ss_pred             eEEEEEEEeCCcHHHHHHHHHHHhcC-C-----ceEEEEecCccccch
Confidence            355 999995 999999999999 77 7     99999999986 554

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=96.65  E-value=0.0088  Score=57.11  Aligned_cols=42  Identities=12%  Similarity=0.146  Sum_probs=31.1

Q ss_pred             CHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       153 d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                      +.++...++|+||+|+|...-.+++.++..   .   ++.+|.++.-+
T Consensus        68 ~~~~~~~~~Dvvf~a~p~~~s~~~~~~~~~---~---g~~vIDlSa~f  109 (337)
T 3dr3_A           68 DISEFSPGVDVVFLATAHEVSHDLAPQFLE---A---GCVVFDLSGAF  109 (337)
T ss_dssp             SGGGTCTTCSEEEECSCHHHHHHHHHHHHH---T---TCEEEECSSTT
T ss_pred             CHHHHhcCCCEEEECCChHHHHHHHHHHHH---C---CCEEEEcCCcc
Confidence            444433789999999999988888877643   3   67888877654

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=96.64  E-value=0.015  Score=53.00  Aligned_cols=63  Identities=19%  Similarity=0.083  Sum_probs=36.9

Q ss_pred             CCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchH
Q 019978          160 DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS  238 (333)
Q Consensus       160 ~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~  238 (333)
                      ++|+||-++++..+.+.++....   .   +..+|..+.|+..+.         .+.+.+..... ....++..||+..
T Consensus        45 ~~DvvIDfT~p~a~~~~~~~a~~---~---g~~~VigTTG~~~e~---------~~~l~~aa~~~-~~~~vv~a~N~si  107 (245)
T 1p9l_A           45 NTEVVIDFTHPDVVMGNLEFLID---N---GIHAVVGTTGFTAER---------FQQVESWLVAK-PNTSVLIAPNFAI  107 (245)
T ss_dssp             TCCEEEECSCTTTHHHHHHHHHH---T---TCEEEECCCCCCHHH---------HHHHHHHHHTS-TTCEEEECSCCCH
T ss_pred             CCcEEEEccChHHHHHHHHHHHH---c---CCCEEEcCCCCCHHH---------HHHHHHHHHhC-CCCCEEEECCccH
Confidence            68999978877777666665443   2   456666666876542         12344433110 1244678888764

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=96.61  E-value=0.0091  Score=56.66  Aligned_cols=37  Identities=11%  Similarity=0.098  Sum_probs=28.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeE-EEEecCCcch
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSV   85 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V-~l~~r~~~~~   85 (333)
                      +||+|+|+|.||..++..|... .    +.++ -+.+++++.+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~-~----~~elvav~d~~~~~~   40 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQ-D----DMELIGITKTKPDFE   40 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTC-T----TEEEEEEEESSCSHH
T ss_pred             cEEEEEeEhHHHHHHHHHHhcC-C----CCEEEEEEcCCHHHH
Confidence            6999999999999999999765 3    1554 4567765543

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=96.52  E-value=0.014  Score=54.97  Aligned_cols=39  Identities=13%  Similarity=0.110  Sum_probs=29.1

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCee-EEEEecCCcc
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRS   84 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~-V~l~~r~~~~   84 (333)
                      .++||+|||+|.+|..++..+.++..    +.+ |.++++++++
T Consensus         3 ~~irVaIIG~G~iG~~~~~~l~~~~~----~~elvav~d~~~~~   42 (312)
T 1nvm_B            3 QKLKVAIIGSGNIGTDLMIKVLRNAK----YLEMGAMVGIDAAS   42 (312)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHCS----SEEEEEEECSCTTC
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHhhCc----CeEEEEEEeCChhh
Confidence            35799999999999999999976311    144 4467888765

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.52  E-value=0.0036  Score=58.22  Aligned_cols=65  Identities=20%  Similarity=0.104  Sum_probs=45.1

Q ss_pred             cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchhh
Q 019978           15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDR   87 (333)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~   87 (333)
                      +|-++-.|-.-.-=+.++++. +.. -..+++.|+|+|.+|.+++..|++. |     . +|++|+|+++++++
T Consensus       100 ~g~l~G~NTD~~G~~~~L~~~-~~~-l~~k~vlvlGaGg~g~aia~~L~~~-G-----~~~v~v~~R~~~~a~~  165 (281)
T 3o8q_A          100 DGEILGDNTDGEGLVQDLLAQ-QVL-LKGATILLIGAGGAARGVLKPLLDQ-Q-----PASITVTNRTFAKAEQ  165 (281)
T ss_dssp             TSCEEEECCHHHHHHHHHHHT-TCC-CTTCEEEEECCSHHHHHHHHHHHTT-C-----CSEEEEEESSHHHHHH
T ss_pred             CCcEEEEecHHHHHHHHHHHh-CCC-ccCCEEEEECchHHHHHHHHHHHhc-C-----CCeEEEEECCHHHHHH
Confidence            454444554443334445432 322 2347999999999999999999998 7     5 89999999876553

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.52  E-value=0.0028  Score=59.14  Aligned_cols=64  Identities=16%  Similarity=0.002  Sum_probs=43.7

Q ss_pred             cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchh
Q 019978           15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVD   86 (333)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~   86 (333)
                      +|-++-.|-.-.-=+..+++. +.. ...+++.|+|+|.+|.+++..|++. |     . +|++++|+.++++
T Consensus        96 ~g~l~G~NTD~~G~~~~L~~~-~~~-~~~k~vlvlGaGGaaraia~~L~~~-G-----~~~v~v~nRt~~ka~  160 (282)
T 3fbt_A           96 REGISGFNTDYIGFGKMLSKF-RVE-IKNNICVVLGSGGAARAVLQYLKDN-F-----AKDIYVVTRNPEKTS  160 (282)
T ss_dssp             SSCEEEECCHHHHHHHHHHHT-TCC-CTTSEEEEECSSTTHHHHHHHHHHT-T-----CSEEEEEESCHHHHH
T ss_pred             CCEEEeeCCcHHHHHHHHHHc-CCC-ccCCEEEEECCcHHHHHHHHHHHHc-C-----CCEEEEEeCCHHHHH
Confidence            344444454433334444431 221 2346999999999999999999998 8     6 8999999987654

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=96.49  E-value=0.012  Score=54.44  Aligned_cols=23  Identities=39%  Similarity=0.443  Sum_probs=20.2

Q ss_pred             CCceEEEECCCHHHHHHHHHHHH
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQD   64 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~   64 (333)
                      .++||+|||+|.||...+..+..
T Consensus         6 ~~~rvgiIG~G~iG~~~~~~l~~   28 (294)
T 1lc0_A            6 GKFGVVVVGVGRAGSVRLRDLKD   28 (294)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHTS
T ss_pred             CcceEEEEEEcHHHHHHHHHHhc
Confidence            46899999999999999888765

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=96.45  E-value=0.0053  Score=57.79  Aligned_cols=84  Identities=17%  Similarity=0.114  Sum_probs=54.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCC-cchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPG-RSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~-~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ++||+|||+|.+|...+..+ .. +     .+|. ++++++ +.+++...     ...+             +  +    
T Consensus         2 ~~rvgiiG~G~~~~~~~~~l-~~-~-----~~lvav~d~~~~~~~~~~~~-----~~~~-------------~--~----   50 (337)
T 3ip3_A            2 SLKICVIGSSGHFRYALEGL-DE-E-----CSITGIAPGVPEEDLSKLEK-----AISE-------------M--N----   50 (337)
T ss_dssp             CEEEEEECSSSCHHHHHTTC-CT-T-----EEEEEEECSSTTCCCHHHHH-----HHHT-------------T--T----
T ss_pred             ceEEEEEccchhHHHHHHhc-CC-C-----cEEEEEecCCchhhHHHHHH-----HHHH-------------c--C----
Confidence            47999999999888776666 33 3     6755 688887 44432210     0000             0  0    


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHh
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                           +                    ...+.+|.++.+.  +.|+|++|+|.....+++.....
T Consensus        51 -----~--------------------~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~   89 (337)
T 3ip3_A           51 -----I--------------------KPKKYNNWWEMLEKEKPDILVINTVFSLNGKILLEALE   89 (337)
T ss_dssp             -----C--------------------CCEECSSHHHHHHHHCCSEEEECSSHHHHHHHHHHHHH
T ss_pred             -----C--------------------CCcccCCHHHHhcCCCCCEEEEeCCcchHHHHHHHHHH
Confidence                 0                    1345688888776  48999999999877776665543

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=96.42  E-value=0.0022  Score=60.37  Aligned_cols=37  Identities=14%  Similarity=-0.031  Sum_probs=32.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .++|.|+|+|.+|..++..|.+. |     + |++++++++.++
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~-g-----~-v~vid~~~~~~~  151 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGS-E-----V-FVLAEDENVRKK  151 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGS-C-----E-EEEESCGGGHHH
T ss_pred             cCCEEEECCcHHHHHHHHHHHhC-C-----c-EEEEeCChhhhh
Confidence            46899999999999999999888 7     9 999999987654

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=96.38  E-value=0.017  Score=55.07  Aligned_cols=98  Identities=10%  Similarity=0.125  Sum_probs=56.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ++||+|+|+|.||..++..|.+. .    +.+|. +.+++++...+.        .....        .+.+...     
T Consensus         1 ~ikVgIiGaG~iG~~~~r~L~~~-p----~~elvav~d~~~~~~~~~--------a~~~g--------~~~~~~~-----   54 (340)
T 1b7g_O            1 MVNVAVNGYGTIGKRVADAIIKQ-P----DMKLVGVAKTSPNYEAFI--------AHRRG--------IRIYVPQ-----   54 (340)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTC-T----TEEEEEEECSSCSHHHHH--------HHHTT--------CCEECCG-----
T ss_pred             CeEEEEEecCHHHHHHHHHHHcC-C----CCEEEEEEcCChHHHHHH--------HHhcC--------cceecCc-----
Confidence            36999999999999999999865 3    14544 556554332211        00000        0001000     


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHh
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                           .|++++.+           ..+.+..+.++...++|+|++|+|.....+..+....
T Consensus        55 -----~~~~~~~~-----------~~v~v~~~~e~l~~~vDvV~~aTp~~~s~~~a~~~~~   99 (340)
T 1b7g_O           55 -----QSIKKFEE-----------SGIPVAGTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQ   99 (340)
T ss_dssp             -----GGHHHHHT-----------TTCCCCCCHHHHHHHCSEEEECCSTTHHHHHHHHHHH
T ss_pred             -----CHHHHhcc-----------cccccccCHhHhhcCCCEEEECCCCchhHHHHHHHHH
Confidence                 01111111           1344556777766789999999999987777765543

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=96.38  E-value=0.0031  Score=59.41  Aligned_cols=35  Identities=23%  Similarity=0.456  Sum_probs=32.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .|||+|||+|.-|.++|..|++. |     ++|++++++++
T Consensus         1 sm~V~IVGaGpaGl~~A~~L~~~-G-----~~v~v~Er~~~   35 (412)
T 4hb9_A            1 SMHVGIIGAGIGGTCLAHGLRKH-G-----IKVTIYERNSA   35 (412)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence            38999999999999999999999 8     99999998764

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.36  E-value=0.0031  Score=61.52  Aligned_cols=38  Identities=18%  Similarity=0.375  Sum_probs=33.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ..+|+|+|+|.+|...+..+..- |     .+|+++++++++.+
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~-G-----a~V~v~D~~~~~~~  209 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSL-G-----AIVRAFDTRPEVKE  209 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCGGGHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHH
Confidence            46999999999999999998877 8     89999999987654

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.33  E-value=0.0091  Score=51.96  Aligned_cols=38  Identities=24%  Similarity=0.261  Sum_probs=34.1

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      .+|||.|.|+ |.+|..++..|.+. |     ++|++.+|+++..
T Consensus         3 ~m~~ilItGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~~   41 (227)
T 3dhn_A            3 KVKKIVLIGASGFVGSALLNEALNR-G-----FEVTAVVRHPEKI   41 (227)
T ss_dssp             CCCEEEEETCCHHHHHHHHHHHHTT-T-----CEEEEECSCGGGC
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHC-C-----CEEEEEEcCcccc
Confidence            3689999996 99999999999999 8     9999999998654

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.27  E-value=0.0097  Score=52.62  Aligned_cols=39  Identities=15%  Similarity=0.227  Sum_probs=33.2

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +|+|.|.|+ |.+|.+++..|++. |    .++|++++|+++.++
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~-G----~~~V~~~~R~~~~~~   62 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADK-Q----TIKQTLFARQPAKIH   62 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTC-T----TEEEEEEESSGGGSC
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhC-C----CceEEEEEcChhhhc
Confidence            478999995 99999999999988 6    169999999987543

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.26  E-value=0.0038  Score=61.75  Aligned_cols=38  Identities=21%  Similarity=0.242  Sum_probs=33.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +++|.|+|+|.+|.+++..|++. |     ++|++++|++++++
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~-G-----~~V~v~~R~~~~a~   40 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDS-G-----IKVTVACRTLESAK   40 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTT-T-----CEEEEEESSHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-c-----CEEEEEECCHHHHH
Confidence            36899999999999999999988 8     89999999876543

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=96.26  E-value=0.016  Score=54.46  Aligned_cols=33  Identities=21%  Similarity=0.396  Sum_probs=28.3

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRR   80 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r   80 (333)
                      |||+|+|+ |.+|+.++..|+.. |..   .++.++++
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~-~~~---~el~L~Di   34 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKE-PFM---KDLVLIGR   34 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTC-TTC---CEEEEEEC
T ss_pred             CEEEEECCCChhHHHHHHHHHhC-CCC---CEEEEEcC
Confidence            69999999 99999999999887 621   36899998

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.26  E-value=0.042  Score=49.94  Aligned_cols=34  Identities=15%  Similarity=0.223  Sum_probs=30.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||.|+|+|.+|+.++..|+.. |.    .+++++|.+.
T Consensus        29 ~~VlvvG~GglG~~va~~La~~-Gv----g~i~lvD~d~   62 (251)
T 1zud_1           29 SQVLIIGLGGLGTPAALYLAGA-GV----GTLVLADDDD   62 (251)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT-TC----SEEEEECCCB
T ss_pred             CcEEEEccCHHHHHHHHHHHHc-CC----CeEEEEeCCC
Confidence            6999999999999999999999 82    3789998875

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=96.24  E-value=0.014  Score=55.56  Aligned_cols=36  Identities=8%  Similarity=0.084  Sum_probs=26.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~   83 (333)
                      |+||+|+|+|.+|..++..|.+. .    +.++. +.+++++
T Consensus         1 mikVgIiGaG~iG~~l~r~L~~~-~----~~elvav~d~~~~   37 (337)
T 1cf2_P            1 MKAVAINGYGTVGKRVADAIAQQ-D----DMKVIGVSKTRPD   37 (337)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTS-S----SEEEEEEEESSCS
T ss_pred             CeEEEEEeECHHHHHHHHHHHcC-C----CcEEEEEEcCChh
Confidence            46999999999999999999875 2    15543 4566543

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.14  E-value=0.018  Score=55.95  Aligned_cols=36  Identities=25%  Similarity=0.246  Sum_probs=31.7

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      -...||.|+|+|.+|.++|..|... |.    .+|+++||+
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~-G~----~~I~v~Dr~  225 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDL-GV----KNVVAVDRK  225 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHH-TC----CEEEEEETT
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhC-CC----CeEEEEECC
Confidence            3457999999999999999999998 82    389999998

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.13  E-value=0.011  Score=58.49  Aligned_cols=54  Identities=17%  Similarity=0.294  Sum_probs=44.6

Q ss_pred             HhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           27 ERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +.+..+...+|..+....+|.|+|+|.+|..+|..|.+.       ++|.+..+++++++.
T Consensus       219 ~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~~-------~~v~iIE~d~~r~~~  272 (461)
T 4g65_A          219 NHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQT-------YSVKLIERNLQRAEK  272 (461)
T ss_dssp             TTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTTT-------SEEEEEESCHHHHHH
T ss_pred             chHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhhc-------CceEEEecCHHHHHH
Confidence            345566667777777788999999999999999998554       899999999987754

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.12  E-value=0.0092  Score=52.52  Aligned_cols=37  Identities=22%  Similarity=0.226  Sum_probs=33.9

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      |+|.|.|+ |.+|.+++..|++. |     ++|++.+|+++..+
T Consensus        22 ~~ilVtGatG~iG~~l~~~L~~~-G-----~~V~~~~R~~~~~~   59 (236)
T 3e8x_A           22 MRVLVVGANGKVARYLLSELKNK-G-----HEPVAMVRNEEQGP   59 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSGGGHH
T ss_pred             CeEEEECCCChHHHHHHHHHHhC-C-----CeEEEEECChHHHH
Confidence            79999998 99999999999999 8     99999999987654

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.10  E-value=0.011  Score=54.65  Aligned_cols=39  Identities=18%  Similarity=0.035  Sum_probs=34.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDR   87 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~~   87 (333)
                      .+++.|+|+|.+|.+++..|++. |     . +|++++|+.+++++
T Consensus       120 ~k~~lvlGaGg~~~aia~~L~~~-G-----~~~v~i~~R~~~~a~~  159 (272)
T 3pwz_A          120 NRRVLLLGAGGAVRGALLPFLQA-G-----PSELVIANRDMAKALA  159 (272)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHT-C-----CSEEEEECSCHHHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHc-C-----CCEEEEEeCCHHHHHH
Confidence            47999999999999999999998 8     5 89999999876553

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.09  E-value=0.0077  Score=58.14  Aligned_cols=39  Identities=18%  Similarity=0.228  Sum_probs=33.8

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ...+|+|+|+|.+|...+..+... |     .+|+++++++++.+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~-G-----a~V~~~d~~~~~~~  209 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRL-G-----AVVMATDVRAATKE  209 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCSTTHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence            357999999999999999998877 8     78999999987654

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.08  E-value=0.0065  Score=55.81  Aligned_cols=65  Identities=15%  Similarity=0.074  Sum_probs=45.3

Q ss_pred             cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +|-+.-.|-.-.-=+..+++ .+. .-..++|.|+|+|.+|.+++..|++. |     .+|++|+|+.+++++
T Consensus        93 ~g~l~g~NTD~~G~~~~L~~-~~~-~~~~~~vlvlGaGg~g~a~a~~L~~~-G-----~~v~v~~R~~~~a~~  157 (272)
T 1p77_A           93 DGKLYADNTDGIGLVTDLQR-LNW-LRPNQHVLILGAGGATKGVLLPLLQA-Q-----QNIVLANRTFSKTKE  157 (272)
T ss_dssp             TSCEEEECCHHHHHHHHHHH-TTC-CCTTCEEEEECCSHHHHTTHHHHHHT-T-----CEEEEEESSHHHHHH
T ss_pred             CCEEEEecCCHHHHHHHHHH-hCC-CcCCCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            34333444444444445544 232 22347999999999999999999999 8     899999999876543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.07  E-value=0.0056  Score=58.61  Aligned_cols=39  Identities=21%  Similarity=0.307  Sum_probs=34.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      ..+|.|+|+|.+|.+.+..+... |     .+|++++|++++++.
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~-G-----a~V~v~dr~~~r~~~  205 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGL-G-----AQVQIFDINVERLSY  205 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHHH
Confidence            47999999999999999999888 8     899999999876543

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=96.03  E-value=0.0058  Score=51.89  Aligned_cols=33  Identities=18%  Similarity=0.313  Sum_probs=30.6

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .|+|||||.-|.+.|..|++. |     ++|+++++.+.
T Consensus         4 dV~IIGaGpaGL~aA~~La~~-G-----~~V~v~Ek~~~   36 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAA-G-----HQVHLFDKSRG   36 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHC-C-----CCEEEEECCCC
Confidence            599999999999999999999 8     99999998753

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.03  E-value=0.011  Score=55.80  Aligned_cols=34  Identities=24%  Similarity=0.281  Sum_probs=31.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~   82 (333)
                      -+++.|+|+|.+|.+++..|++. |     . +|++++|++
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~-G-----a~~V~i~nR~~  188 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALD-G-----VKEISIFNRKD  188 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHT-T-----CSEEEEEECSS
T ss_pred             CCEEEEECCChHHHHHHHHHHHC-C-----CCEEEEEECCC
Confidence            36999999999999999999998 8     6 899999993

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.01  E-value=0.044  Score=52.40  Aligned_cols=34  Identities=21%  Similarity=0.242  Sum_probs=30.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||.|||+|..|+.+|..|+.. |.    -+++++|++.
T Consensus        35 ~~VlIvGaGGlGs~va~~La~a-GV----g~ItlvD~D~   68 (340)
T 3rui_A           35 TKVLLLGAGTLGCYVSRALIAW-GV----RKITFVDNGT   68 (340)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TC----CEEEEECCCB
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CC----CEEEEecCCE
Confidence            6999999999999999999999 82    4789998875

>3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str}

Probab=95.98  E-value=0.005  Score=59.84  Aligned_cols=117  Identities=18%  Similarity=0.267  Sum_probs=71.5

Q ss_pred             ceEEEECCCHHHHHHHH-HHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           44 LRIVGVGAGAWGSVFTA-MLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~-~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      ||+..+|+|++|.++-. .|.++ |     ++|++.++++..+++++.++                   .|.-.+.+   
T Consensus         1 mkavhfGaGniGRGfig~~l~~~-g-----~~v~f~dv~~~~i~~Ln~~~-------------------~Y~V~~~g---   52 (382)
T 3h2z_A            1 MKALHFGAGNIGRGFIGKLLADA-G-----IQLTFADVNQVVLDALNARH-------------------SYQVHVVG---   52 (382)
T ss_dssp             CEEEEECCSHHHHHTHHHHHHHT-T-----CEEEEEESCHHHHHHHHHHS-------------------EEEEEEES---
T ss_pred             CcEEEECCCccchhhHHHHHHHc-C-----CeEEEEeCCHHHHHHHhcCC-------------------CEEEEEcc---
Confidence            79999999999966555 56666 7     89999999998777655432                   23221100   


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEe-c---CHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhcc----C-CCCEE
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVV-T---NLQEAVWDADIVINGLPSTETKEVFEEISRYWKER----I-TVPVI  193 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t-~---d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~----~-~~~~I  193 (333)
                      ...        ..       ....+++.. +   +.-+++.++|+|..++.+...+.+...|...+..+    . +.-.|
T Consensus        53 ~~~--------~~-------~~v~~v~ai~s~~~~~~~~i~~adlitT~vG~~~l~~i~~~l~~~L~~R~~~~~~~plti  117 (382)
T 3h2z_A           53 ETE--------QV-------DTVSGVNAVSSIGDDVVDLIAQVDLVTTAVGPVVLERIAPAIAKGLVKRKEQGNESPLNI  117 (382)
T ss_dssp             SSE--------EE-------EEEESCEEEETTSSHHHHHHTTCSEEEECCCHHHHHHTHHHHHHHHHHHHHHTCCSCEEE
T ss_pred             CCc--------ce-------EEEEEEEEEeCcHHHHHHHHcCCCEEEECCCcccHHHHHHHHHHHHHHHHHcCCCCCcEE
Confidence            000        00       000133331 1   23345679999999999888888877777655321    1 13357


Q ss_pred             EEeeecCccc
Q 019978          194 ISLAKGVEAE  203 (333)
Q Consensus       194 vs~~kGi~~~  203 (333)
                      ++|-|-...+
T Consensus       118 lsCeN~~~ng  127 (382)
T 3h2z_A          118 IACENMVRGT  127 (382)
T ss_dssp             EECCSSTTHH
T ss_pred             EECCCccchH
Confidence            7887765543

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=95.97  E-value=0.029  Score=53.15  Aligned_cols=43  Identities=12%  Similarity=0.063  Sum_probs=29.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCC---CCCCeeE-EEEecCCcchh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGY---LRDKVLI-RIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~---~~~~~~V-~l~~r~~~~~~   86 (333)
                      ++||+|||+|.||+.++..+.++ ..   +-.+.+| -++++++++++
T Consensus         6 ~irvgIiG~G~VG~~~~~~l~~~-~~~~~~g~~~~vvaV~d~~~~~~~   52 (331)
T 3c8m_A            6 TINLSIFGLGNVGLNLLRIIRSF-NEENRLGLKFNVVFVADSLHSYYN   52 (331)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHH-HHHCSSSEEEEEEEEECSSCEEEC
T ss_pred             EEeEEEEecCHHHHHHHHHHHhC-hHHHhcCCcEEEEEEEECChHHhh
Confidence            47999999999999999998765 10   0000343 46778776554

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=95.94  E-value=0.024  Score=54.21  Aligned_cols=41  Identities=32%  Similarity=0.421  Sum_probs=29.4

Q ss_pred             CHHHHhc-CCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          153 NLQEAVW-DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       153 d~~ea~~-~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                      ++++.++ ++|+||+|+|.....+.+..+..   .   ++.||+++.-
T Consensus        75 ~~~~~~~~~~DvV~~atp~~~~~~~a~~~~~---a---G~~VId~s~~  116 (354)
T 1ys4_A           75 DPKHEEFEDVDIVFSALPSDLAKKFEPEFAK---E---GKLIFSNASA  116 (354)
T ss_dssp             CTTSGGGTTCCEEEECCCHHHHHHHHHHHHH---T---TCEEEECCST
T ss_pred             CHHHHhcCCCCEEEECCCchHHHHHHHHHHH---C---CCEEEECCch
Confidence            4444445 89999999999988777776643   3   5678887643

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=95.91  E-value=0.018  Score=55.58  Aligned_cols=44  Identities=16%  Similarity=0.188  Sum_probs=35.9

Q ss_pred             hccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           36 MGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        36 ~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      .|..+-.-++|+|+|+|+||..+|..|... |     .+|+++|++++.+
T Consensus       166 ~G~~~L~GktV~V~G~G~VG~~~A~~L~~~-G-----akVvv~D~~~~~l  209 (364)
T 1leh_A          166 FGSDSLEGLAVSVQGLGNVAKALCKKLNTE-G-----AKLVVTDVNKAAV  209 (364)
T ss_dssp             HSSCCCTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHH
T ss_pred             ccccCCCcCEEEEECchHHHHHHHHHHHHC-C-----CEEEEEcCCHHHH
Confidence            454233347999999999999999999998 8     8999999887544

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.86  E-value=0.0078  Score=54.52  Aligned_cols=36  Identities=22%  Similarity=0.288  Sum_probs=33.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      +|||.|.|+|.+|+.++..|.+. |     ++|+..+|+++.
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~   38 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQ-G-----HEVTGLRRSAQP   38 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECTTSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCccc
Confidence            47999999999999999999999 8     999999998764

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=95.83  E-value=0.013  Score=53.74  Aligned_cols=65  Identities=22%  Similarity=0.195  Sum_probs=44.6

Q ss_pred             cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +|-++-.|-.-.-=+..+++ .+.. -..+++.|+|+|.+|.+++..|++. |     .+|++|+|+++++++
T Consensus        93 ~g~l~G~ntD~~G~~~~L~~-~~~~-l~~k~vlViGaGg~g~a~a~~L~~~-G-----~~V~v~~R~~~~~~~  157 (271)
T 1nyt_A           93 DGRLLGDNTDGVGLLSDLER-LSFI-RPGLRILLIGAGGASRGVLLPLLSL-D-----CAVTITNRTVSRAEE  157 (271)
T ss_dssp             TSCEEEECCHHHHHHHHHHH-HTCC-CTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSHHHHHH
T ss_pred             CCeEEEeCCCHHHHHHHHHh-cCcC-cCCCEEEEECCcHHHHHHHHHHHHc-C-----CEEEEEECCHHHHHH
Confidence            34334444433333444444 2322 2336999999999999999999999 8     899999999876543

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=95.82  E-value=0.032  Score=53.24  Aligned_cols=37  Identities=27%  Similarity=0.410  Sum_probs=27.7

Q ss_pred             hcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          158 VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       158 ~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                      +.++|+||+|+|.....+.+..+.   ..   ++.+|+++.-+
T Consensus        66 ~~~vDvV~~a~g~~~s~~~a~~~~---~a---G~~VId~Sa~~  102 (345)
T 2ozp_A           66 LEPADILVLALPHGVFAREFDRYS---AL---APVLVDLSADF  102 (345)
T ss_dssp             CCCCSEEEECCCTTHHHHTHHHHH---TT---CSEEEECSSTT
T ss_pred             hcCCCEEEEcCCcHHHHHHHHHHH---HC---CCEEEEcCccc
Confidence            578999999999998777776654   33   56788776544

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=95.82  E-value=0.017  Score=55.49  Aligned_cols=33  Identities=18%  Similarity=0.302  Sum_probs=26.0

Q ss_pred             ceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        44 ~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      +||+|+| .|.+|..+...|.+. .    ..+++.+...
T Consensus        17 ~kV~IiGAtG~iG~~llr~L~~~-p----~~elvai~~~   50 (359)
T 1xyg_A           17 IRIGLLGASGYTGAEIVRLLANH-P----HFQVTLMTAD   50 (359)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHTC-S----SEEEEEEBCS
T ss_pred             cEEEEECcCCHHHHHHHHHHHcC-C----CcEEEEEeCc
Confidence            6999999 699999999999876 4    1466655543

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=95.81  E-value=0.02  Score=53.73  Aligned_cols=39  Identities=23%  Similarity=0.440  Sum_probs=31.2

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCC---CCCeeEEEEecCC
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYL---RDKVLIRIWRRPG   82 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~---~~~~~V~l~~r~~   82 (333)
                      .+|||+|+|+ |.+|+.++..|... |++   .. ++|+++++++
T Consensus         3 ~~mkVlVtGaaGfIG~~l~~~L~~~-g~~~~~~~-~ev~l~D~~~   45 (327)
T 1y7t_A            3 APVRVAVTGAAGQIGYSLLFRIAAG-EMLGKDQP-VILQLLEIPQ   45 (327)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTT-TTTCTTCC-EEEEEECCGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhC-CCCCCCCC-CEEEEEeCCC
Confidence            3589999997 99999999999988 721   11 2899999875

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=95.72  E-value=0.012  Score=55.96  Aligned_cols=23  Identities=30%  Similarity=0.572  Sum_probs=20.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDS   65 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~   65 (333)
                      ++||+|||+|.+|+.++..+.++
T Consensus         3 ~irvgIiG~G~VG~~~~~~l~~~   25 (332)
T 2ejw_A            3 ALKIALLGGGTVGSAFYNLVLER   25 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhC
Confidence            47999999999999999998775

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=95.64  E-value=0.022  Score=52.22  Aligned_cols=46  Identities=17%  Similarity=0.081  Sum_probs=32.1

Q ss_pred             EEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          149 KVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       149 ~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                      .+++|+++.+.++|+|+.|-+...+++...++   +..   +.-+++.+-|.
T Consensus        49 ~a~~d~d~lla~pD~VVe~A~~~av~e~~~~i---L~a---G~dvv~~S~ga   94 (253)
T 1j5p_A           49 VVRLDEFQVPSDVSTVVECASPEAVKEYSLQI---LKN---PVNYIIISTSA   94 (253)
T ss_dssp             SEECSSCCCCTTCCEEEECSCHHHHHHHHHHH---TTS---SSEEEECCGGG
T ss_pred             eeeCCHHHHhhCCCEEEECCCHHHHHHHHHHH---HHC---CCCEEEcChhh
Confidence            35667777667899999999888776655444   444   56677776663

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.59  E-value=0.013  Score=52.85  Aligned_cols=38  Identities=18%  Similarity=0.161  Sum_probs=34.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +|||.|.|+|.+|+.++..|.+. |     ++|+..+|+++..+
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~~~   42 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQ-G-----WRIIGTSRNPDQME   42 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGG-T-----CEEEEEESCGGGHH
T ss_pred             cCcEEEECCcHHHHHHHHHHHHC-C-----CEEEEEEcChhhhh
Confidence            47999999999999999999999 8     99999999886543

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=95.59  E-value=0.091  Score=51.77  Aligned_cols=34  Identities=24%  Similarity=0.358  Sum_probs=30.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||.|||+|..|+.++..|+.. |.    -+++++|.+.
T Consensus        41 ~~VlvvG~GGlGs~va~~La~a-Gv----g~i~ivD~D~   74 (434)
T 1tt5_B           41 CKVLVIGAGGLGCELLKNLALS-GF----RQIHVIDMDT   74 (434)
T ss_dssp             CCEEEECSSTHHHHHHHHHHHT-TC----CCEEEEECCB
T ss_pred             CEEEEECcCHHHHHHHHHHHHc-CC----CEEEEEcCCE
Confidence            5899999999999999999999 82    4799998764

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=95.54  E-value=0.019  Score=54.21  Aligned_cols=35  Identities=23%  Similarity=0.330  Sum_probs=31.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~   83 (333)
                      .+++.|+|+|-+|.+++..|++. |     . +|++++|+++
T Consensus       148 gk~~lVlGAGGaaraia~~L~~~-G-----~~~v~v~nRt~~  183 (312)
T 3t4e_A          148 GKTMVLLGAGGAATAIGAQAAIE-G-----IKEIKLFNRKDD  183 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-T-----CSEEEEEECSST
T ss_pred             CCEEEEECcCHHHHHHHHHHHHc-C-----CCEEEEEECCCc
Confidence            36999999999999999999998 8     6 8999999943

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.52  E-value=0.015  Score=50.14  Aligned_cols=36  Identities=22%  Similarity=0.276  Sum_probs=33.0

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      |||.|.|+ |.+|+.++..|++. |     ++|++++|+++..
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~~~~   37 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNR-G-----HEVTAIVRNAGKI   37 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCSHHH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhC-C-----CEEEEEEcCchhh
Confidence            79999996 99999999999999 8     9999999998654

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=95.50  E-value=0.025  Score=56.60  Aligned_cols=48  Identities=21%  Similarity=0.115  Sum_probs=37.2

Q ss_pred             hHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           30 DELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        30 ~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      +...|..++.- .-++++|+|+|.+|.++|..|+.. |     .+|.+++++++.
T Consensus       253 dgi~r~tg~~L-~GKtVvVtGaGgIG~aiA~~Laa~-G-----A~Viv~D~~~~~  300 (488)
T 3ond_A          253 DGLMRATDVMI-AGKVAVVAGYGDVGKGCAAALKQA-G-----ARVIVTEIDPIC  300 (488)
T ss_dssp             HHHHHHHCCCC-TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHH
T ss_pred             HHHHHHcCCcc-cCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHH
Confidence            33445555422 236899999999999999999998 8     899999998754

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.47  E-value=0.018  Score=53.11  Aligned_cols=37  Identities=19%  Similarity=0.364  Sum_probs=33.3

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      +|||.|.|+ |.+|+.++..|.+. |     ++|++.+|+++..
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~~   50 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAA-G-----HDLVLIHRPSSQI   50 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEECTTSCG
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEecChHhh
Confidence            479999996 99999999999999 8     9999999987654

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=95.45  E-value=0.16  Score=48.44  Aligned_cols=51  Identities=20%  Similarity=0.205  Sum_probs=37.2

Q ss_pred             HhhhHHHHhhccCCC---CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           27 ERLDELRRLMGKAEG---DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        27 ~~~~~~~~~~~~~~~---~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      +|.+.-.+++|...-   ...+|.|+|+|..|+.++..|+.. |.    -.++++|.+.
T Consensus        17 ~rY~Rq~~l~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~-Gv----g~itlvD~d~   70 (346)
T 1y8q_A           17 AQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILA-GV----KGLTMLDHEQ   70 (346)
T ss_dssp             HHHHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHH-TC----SEEEEECCCB
T ss_pred             HHHHHHHHhhCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHc-CC----CEEEEEECCC
Confidence            355555555553321   136999999999999999999999 82    3799998764

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=95.42  E-value=0.035  Score=53.26  Aligned_cols=39  Identities=15%  Similarity=0.221  Sum_probs=27.9

Q ss_pred             HHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       156 ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                      +.+.++|+||+|+|.....++++.+ .   .   ++.+|.++.-+.
T Consensus        76 ~~~~~~DvVf~alg~~~s~~~~~~~-~---~---G~~vIDlSa~~R  114 (352)
T 2nqt_A           76 AVLGGHDAVFLALPHGHSAVLAQQL-S---P---ETLIIDCGADFR  114 (352)
T ss_dssp             HHHTTCSEEEECCTTSCCHHHHHHS-C---T---TSEEEECSSTTT
T ss_pred             HHhcCCCEEEECCCCcchHHHHHHH-h---C---CCEEEEECCCcc
Confidence            3466899999999998777766665 2   2   567887765443

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=95.41  E-value=0.024  Score=51.20  Aligned_cols=38  Identities=24%  Similarity=0.142  Sum_probs=32.3

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      |||.|.|+ |.+|+.++..|.+..|     ++|++.+|+++...
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g-----~~V~~~~R~~~~~~   39 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHI-----DHFHIGVRNVEKVP   39 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTC-----TTEEEEESSGGGSC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCC-----CcEEEEECCHHHHH
Confidence            78999996 9999999999987514     89999999987543

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=95.30  E-value=0.14  Score=52.43  Aligned_cols=34  Identities=21%  Similarity=0.242  Sum_probs=30.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||.|||+|..|+.+|..|+.. |.    -+++++|.+.
T Consensus       328 ~kVLIVGaGGLGs~va~~La~a-GV----G~ItLvD~D~  361 (598)
T 3vh1_A          328 TKVLLLGAGTLGCYVSRALIAW-GV----RKITFVDNGT  361 (598)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-TC----CEEEEECCSB
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CC----CEEEEECCCc
Confidence            6999999999999999999999 82    3799998763

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.29  E-value=0.095  Score=53.76  Aligned_cols=34  Identities=21%  Similarity=0.242  Sum_probs=30.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||.|||+|..|+.+|..|+.. |.    -+++++|.+.
T Consensus       327 arVLIVGaGGLGs~vA~~La~a-GV----G~ItLvD~D~  360 (615)
T 4gsl_A          327 TKVLLLGAGTLGCYVSRALIAW-GV----RKITFVDNGT  360 (615)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TC----CEEEEECCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCC
Confidence            6999999999999999999999 82    4799999875

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.26  E-value=0.03  Score=49.10  Aligned_cols=37  Identities=22%  Similarity=0.348  Sum_probs=33.1

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCe--eEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~--~V~l~~r~~~~~~   86 (333)
                      |+|.|.|+ |.+|.+++..|++. |     +  +|++++|+++..+
T Consensus        19 ~~vlVtGasg~iG~~l~~~L~~~-G-----~~~~V~~~~r~~~~~~   58 (242)
T 2bka_A           19 KSVFILGASGETGRVLLKEILEQ-G-----LFSKVTLIGRRKLTFD   58 (242)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHH-T-----CCSEEEEEESSCCCCC
T ss_pred             CeEEEECCCcHHHHHHHHHHHcC-C-----CCCEEEEEEcCCCCcc
Confidence            78999995 99999999999999 8     8  9999999986543

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.26  E-value=0.045  Score=49.20  Aligned_cols=35  Identities=14%  Similarity=0.125  Sum_probs=31.5

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .-++|.|||+|.+|..-+..|.+. |     .+|++++.+.
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~-G-----A~VtVvap~~   64 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQE-G-----AAITVVAPTV   64 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGG-C-----CCEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCCC
Confidence            347999999999999999999999 8     8999998764

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.16  E-value=0.018  Score=49.88  Aligned_cols=36  Identities=25%  Similarity=0.289  Sum_probs=33.0

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      |||.|.|+ |.+|..++..|++. |     ++|++.+|+++..
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~~~~   37 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRR-G-----HEVLAVVRDPQKA   37 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHC-C-----CEEEEEEeccccc
Confidence            78999998 99999999999999 8     9999999987654

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=95.11  E-value=0.017  Score=56.35  Aligned_cols=36  Identities=19%  Similarity=0.214  Sum_probs=32.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      ..+|+|||+|..|.+.|..|++. |     ++|+++++.+..
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~-G-----~~V~llEk~~~~   62 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKR-G-----RRVLVIDHARAP   62 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCCCC
Confidence            36899999999999999999999 8     899999998753

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=95.10  E-value=0.065  Score=52.98  Aligned_cols=45  Identities=18%  Similarity=0.207  Sum_probs=29.2

Q ss_pred             EecCHHHHhc--CCCEEEEecCc-hhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          150 VVTNLQEAVW--DADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       150 ~t~d~~ea~~--~aDlIIlaVps-~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                      .++|+++.+.  +.|+|++++|. ....+.+.+   .+..   ++.|++..|++
T Consensus        66 ~~~d~~ell~d~diDvVve~tp~~~~h~~~~~~---AL~a---GKhVvtenkal  113 (444)
T 3mtj_A           66 LTTNPFDVVDDPEIDIVVELIGGLEPARELVMQ---AIAN---GKHVVTANKHL  113 (444)
T ss_dssp             EESCTHHHHTCTTCCEEEECCCSSTTHHHHHHH---HHHT---TCEEEECCHHH
T ss_pred             ccCCHHHHhcCCCCCEEEEcCCCchHHHHHHHH---HHHc---CCEEEECCccc
Confidence            5577888776  47999999996 444444433   2333   66787766643

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.09  E-value=0.016  Score=55.03  Aligned_cols=48  Identities=23%  Similarity=0.176  Sum_probs=38.5

Q ss_pred             hHHHHhhccCCCCCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           30 DELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        30 ~~~~~~~~~~~~~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      ++++++..|.. .+|+|.|.|+ |.+|+.++..|.+. |     ++|++.+|+++.
T Consensus        17 ~~~~~~~~~~~-~~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~   65 (379)
T 2c5a_A           17 KELEREQYWPS-ENLKISITGAGGFIASHIARRLKHE-G-----HYVIASDWKKNE   65 (379)
T ss_dssp             TTCCCCCSCTT-SCCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSCCS
T ss_pred             HHHhccccccc-cCCeEEEECCccHHHHHHHHHHHHC-C-----CeEEEEECCCcc
Confidence            34444444444 5689999998 99999999999999 8     999999998754

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=95.08  E-value=0.019  Score=53.82  Aligned_cols=40  Identities=18%  Similarity=0.177  Sum_probs=32.7

Q ss_pred             ccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           37 GKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        37 ~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ..+......|+|||+|..|.+.|..|++. |     ++|+++++..
T Consensus        11 ~~~~~~~~dvvIIGgG~~Gl~~A~~La~~-G-----~~V~llE~~~   50 (382)
T 1ryi_A           11 IRAMKRHYEAVVIGGGIIGSAIAYYLAKE-N-----KNTALFESGT   50 (382)
T ss_dssp             ---CCSEEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred             hhccCCCCCEEEECcCHHHHHHHHHHHhC-C-----CcEEEEeCCC
Confidence            33334456899999999999999999999 8     8999999864

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=95.08  E-value=0.1  Score=49.72  Aligned_cols=36  Identities=22%  Similarity=0.346  Sum_probs=26.9

Q ss_pred             hcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          158 VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       158 ~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                      +.++|+||+|+|.....+.+..+..   .   ++.||+++.-
T Consensus        75 ~~~vDvVf~atp~~~s~~~a~~~~~---a---G~~VId~s~~  110 (350)
T 2ep5_A           75 HKDVDVVLSALPNELAESIELELVK---N---GKIVVSNASP  110 (350)
T ss_dssp             GTTCSEEEECCCHHHHHHHHHHHHH---T---TCEEEECSST
T ss_pred             hcCCCEEEECCChHHHHHHHHHHHH---C---CCEEEECCcc
Confidence            4789999999999887777766543   3   5678887644

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=95.07  E-value=0.023  Score=54.13  Aligned_cols=36  Identities=19%  Similarity=0.335  Sum_probs=32.5

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ..++|+|||+|..|.++|..|++. |     ++|+++++.+.
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~-G-----~~V~v~E~~~~   57 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQS-G-----IDCDVYEAVKE   57 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCCC
Confidence            347999999999999999999999 8     99999999874

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=95.04  E-value=0.021  Score=54.11  Aligned_cols=36  Identities=11%  Similarity=0.145  Sum_probs=31.4

Q ss_pred             CceEEEECCCHH-HHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           43 PLRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        43 ~~kI~IIGaG~m-G~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      .++++|||+|.| |..+|..|... |     ..|++.+|+..+
T Consensus       177 gk~vvVIG~G~iVG~~~A~~L~~~-g-----AtVtv~nR~~~~  213 (320)
T 1edz_A          177 GKKCIVINRSEIVGRPLAALLAND-G-----ATVYSVDVNNIQ  213 (320)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTT-S-----CEEEEECSSEEE
T ss_pred             CCEEEEECCCcchHHHHHHHHHHC-C-----CEEEEEeCchHH
Confidence            479999999975 99999999988 7     789999998643

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.04  E-value=0.025  Score=52.72  Aligned_cols=34  Identities=29%  Similarity=0.343  Sum_probs=31.2

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      +|+|.|.|+ |.+|..++..|.+. |     ++|++.+|++
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~-g-----~~V~~l~R~~   44 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDA-H-----RPTYILARPG   44 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHT-T-----CCEEEEECSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHC-C-----CCEEEEECCC
Confidence            479999998 99999999999998 8     9999999987

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.99  E-value=0.045  Score=51.40  Aligned_cols=36  Identities=14%  Similarity=0.021  Sum_probs=32.1

Q ss_pred             CCceEEEECCCHHHHH-HHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~a-lA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +++||.|||.|.+|.+ +|..|.+. |     ++|+++|+++.
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~-G-----~~V~~~D~~~~   39 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEA-G-----FEVSGCDAKMY   39 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHT-T-----CEEEEEESSCC
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhC-C-----CEEEEEcCCCC
Confidence            4689999999999995 99999998 8     99999999763

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=94.98  E-value=0.026  Score=51.39  Aligned_cols=35  Identities=23%  Similarity=0.396  Sum_probs=32.3

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      |||.|.|+ |.+|+.++..|.+. |     |+|+...|+++.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~-G-----~~V~~l~R~~~~   36 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNAR-G-----HEVTLVSRKPGP   36 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSCCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCCCc
Confidence            89999998 99999999999999 8     999999998753

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=94.94  E-value=0.029  Score=53.49  Aligned_cols=36  Identities=19%  Similarity=0.456  Sum_probs=32.6

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ..++|+|||+|..|.++|..|++. |     ++|+++++.+.
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~   60 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQN-G-----IDVSVYERDND   60 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEEECSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeCCCC
Confidence            346999999999999999999999 8     99999999764

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=94.90  E-value=0.053  Score=51.39  Aligned_cols=39  Identities=10%  Similarity=0.167  Sum_probs=27.9

Q ss_pred             CCCEEEEecCchhH-HHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          160 DADIVINGLPSTET-KEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       160 ~aDlIIlaVps~~~-~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                      +.|+|+.|+|+... ....+.+...+..   ++.||+..|+..
T Consensus        82 ~iDvVVe~T~~~~~~~pa~~~~~~aL~a---GkhVVtaNK~~l  121 (325)
T 3ing_A           82 AADLLVDCTPASRDGVREYSLYRMAFES---GMNVVTANKSGL  121 (325)
T ss_dssp             CCSEEEECCCCCSSSHHHHHHHHHHHHT---TCEEEECCCHHH
T ss_pred             CCCEEEECCCCccccchHHHHHHHHHHC---CCeEEEcCchhH
Confidence            58999999998643 5555556666665   678888777643

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=94.89  E-value=0.03  Score=50.88  Aligned_cols=34  Identities=21%  Similarity=0.142  Sum_probs=31.6

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      +|+|.|.|+ |.+|..++..|.+. |     ++|++.+|++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKA-G-----NPTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHH-T-----CCEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhC-C-----CcEEEEECCC
Confidence            478999997 99999999999999 8     9999999986

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=94.88  E-value=0.03  Score=46.98  Aligned_cols=35  Identities=17%  Similarity=0.248  Sum_probs=31.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +.+|+|||+|..|..+|..|++. |     .+|+++++.+.
T Consensus         1 ~~~vvIIGgG~~Gl~~A~~l~~~-g-----~~v~lie~~~~   35 (180)
T 2ywl_A            1 MWDVIVVGGGPSGLSAALFLARA-G-----LKVLVLDGGRS   35 (180)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECSCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence            35899999999999999999998 8     89999998763

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=94.85  E-value=0.14  Score=48.92  Aligned_cols=35  Identities=9%  Similarity=0.129  Sum_probs=26.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~   83 (333)
                      +||+|+|+|.+|..++..|..+ .    +.+|. +.+++++
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~-~----~~evvaV~d~~~~   38 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQ-D----DMEVIGVTKTKPD   38 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHS-S----SEEEEEEEESSCS
T ss_pred             eEEEEECCCHHHHHHHHHHHhC-C----CceEEEEecCCHH
Confidence            6999999999999999998765 3    15544 4455433

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=94.70  E-value=0.078  Score=51.12  Aligned_cols=38  Identities=13%  Similarity=0.033  Sum_probs=29.0

Q ss_pred             HhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       157 a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                      .+.++|+||+|+|...-.+.+..+..   .   ++.+|.++.-+
T Consensus        61 ~~~~~Dvvf~a~~~~~s~~~a~~~~~---~---G~~vIDlSa~~   98 (366)
T 3pwk_A           61 AFEGVDIALFSAGSSTSAKYAPYAVK---A---GVVVVDNTSYF   98 (366)
T ss_dssp             TTTTCSEEEECSCHHHHHHHHHHHHH---T---TCEEEECSSTT
T ss_pred             HhcCCCEEEECCChHhHHHHHHHHHH---C---CCEEEEcCCcc
Confidence            36789999999998887777776643   3   67788887654

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=94.70  E-value=0.21  Score=47.68  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=30.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||.|||+|..|+.++..|+.. |.    -+++++|++.
T Consensus       119 ~~VlvvG~GglGs~va~~La~a-Gv----g~i~lvD~D~  152 (353)
T 3h5n_A          119 AKVVILGCGGIGNHVSVILATS-GI----GEIILIDNDQ  152 (353)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TC----SEEEEEECCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CC----CeEEEECCCc
Confidence            6999999999999999999999 82    4799999875

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=94.67  E-value=0.42  Score=44.53  Aligned_cols=34  Identities=26%  Similarity=0.364  Sum_probs=30.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||.|||+|..|+.++..|+.. |.    -+++++|.+.
T Consensus        37 ~~VlVvGaGGlGs~va~~La~a-GV----G~i~lvD~D~   70 (292)
T 3h8v_A           37 FAVAIVGVGGVGSVTAEMLTRC-GI----GKLLLFDYDK   70 (292)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TC----SEEEEECCCB
T ss_pred             CeEEEECcCHHHHHHHHHHHHc-CC----CEEEEECCCc
Confidence            6999999999999999999999 82    4788998875

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=94.67  E-value=0.072  Score=48.81  Aligned_cols=34  Identities=21%  Similarity=0.281  Sum_probs=31.2

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ++|.|.|+ |.+|..++..|.+. |     ++|++.+|+++
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~l~R~~~   46 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKL-G-----HPTYVFTRPNS   46 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHT-T-----CCEEEEECTTC
T ss_pred             CeEEEECCCchHHHHHHHHHHHC-C-----CcEEEEECCCC
Confidence            48999996 99999999999999 8     99999999875

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=94.66  E-value=0.096  Score=52.23  Aligned_cols=40  Identities=18%  Similarity=0.253  Sum_probs=30.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      .+||.|||+|.||++++..++++ ..+.. .+|++.+.+...
T Consensus        13 ~~rVlIIGaGgVG~~va~lla~~-~dv~~-~~I~vaD~~~~~   52 (480)
T 2ph5_A           13 KNRFVILGFGCVGQALMPLIFEK-FDIKP-SQVTIIAAEGTK   52 (480)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHH-BCCCG-GGEEEEESSCCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhC-CCCce-eEEEEeccchhh
Confidence            47999999999999999999998 42211 268888776643

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=94.65  E-value=0.052  Score=49.40  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=31.9

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +|+|.|.|+ |.+|+.++..|.+. |     ++|++.+|+..
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~~   39 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISL-G-----HPTYVLFRPEV   39 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT-T-----CCEEEECCSCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhC-C-----CcEEEEECCCc
Confidence            579999996 99999999999999 8     99999999863

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=94.57  E-value=0.044  Score=49.74  Aligned_cols=35  Identities=26%  Similarity=0.228  Sum_probs=32.0

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +|+|.|+|+ |.+|..++..|.+. |     ++|++.+|+..
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~l~R~~~   39 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDL-G-----HPTFLLVREST   39 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT-T-----CCEEEECCCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhC-C-----CCEEEEECCcc
Confidence            579999997 99999999999999 8     99999999864

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=94.55  E-value=0.03  Score=52.04  Aligned_cols=34  Identities=26%  Similarity=0.558  Sum_probs=30.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHH---hcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~---~~G~~~~~~~V~l~~r~~   82 (333)
                      |++|+|||+|..|.+.|..|++   . |     ++|+++++..
T Consensus         1 m~dV~IIGaG~aGl~~A~~L~~~~~~-G-----~~V~v~Ek~~   37 (342)
T 3qj4_A            1 MAQVLIVGAGMTGSLCAALLRRQTSG-P-----LYLAVWDKAD   37 (342)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHSCC-C-C-----EEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHHhhccC-C-----ceEEEEECCC
Confidence            3689999999999999999999   7 7     9999998764

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=94.52  E-value=0.052  Score=49.59  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=31.2

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      |||.|.|+ |.+|+.++..|.+. |     ++|+..+|++.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~   37 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKND-G-----NTPIILTRSIG   37 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhC-C-----CEEEEEeCCCC
Confidence            79999995 99999999999999 8     99999999843

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=94.51  E-value=0.052  Score=49.75  Aligned_cols=34  Identities=21%  Similarity=0.173  Sum_probs=31.6

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      +|+|.|.|+ |.+|++++..|.+. |     ++|++.+|++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~   38 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSF-S-----HPTFIYARPL   38 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHT-T-----CCEEEEECCC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhC-C-----CcEEEEECCc
Confidence            578999996 99999999999999 8     9999999986

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=94.45  E-value=0.11  Score=49.80  Aligned_cols=101  Identities=16%  Similarity=0.201  Sum_probs=61.5

Q ss_pred             CCCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           41 GDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        41 ~~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      ++|.||+|||+ |..|.-|.+.|.+. .    ..++..+.... .+-+    .+    .+             .++.+  
T Consensus        11 ~~~~~V~IvGAtG~vG~ellrlL~~h-P----~~el~~l~S~~-~aG~----~~----~~-------------~~p~~--   61 (351)
T 1vkn_A           11 HHMIRAGIIGATGYTGLELVRLLKNH-P----EAKITYLSSRT-YAGK----KL----EE-------------IFPST--   61 (351)
T ss_dssp             -CCEEEEEESTTSHHHHHHHHHHHHC-T----TEEEEEEECST-TTTS----BH----HH-------------HCGGG--
T ss_pred             cceeEEEEECCCCHHHHHHHHHHHcC-C----CcEEEEEeCcc-cccC----Ch----HH-------------hChhh--
Confidence            46789999996 99999999999976 3    25666554332 1110    00    00             01110  


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                        .. .+                    .+.. .|.++...++|++|+|+|...-.++..++     .   ++.||+++.-
T Consensus        62 --~~-~l--------------------~~~~-~~~~~~~~~~Dvvf~alp~~~s~~~~~~~-----~---g~~VIDlSsd  109 (351)
T 1vkn_A           62 --LE-NS--------------------ILSE-FDPEKVSKNCDVLFTALPAGASYDLVREL-----K---GVKIIDLGAD  109 (351)
T ss_dssp             --CC-CC--------------------BCBC-CCHHHHHHHCSEEEECCSTTHHHHHHTTC-----C---SCEEEESSST
T ss_pred             --cc-Cc--------------------eEEe-CCHHHhhcCCCEEEECCCcHHHHHHHHHh-----C---CCEEEECChh
Confidence              00 00                    1111 24444346899999999999888887766     3   6789988765


Q ss_pred             Ccc
Q 019978          200 VEA  202 (333)
Q Consensus       200 i~~  202 (333)
                      +-.
T Consensus       110 fRl  112 (351)
T 1vkn_A          110 FRF  112 (351)
T ss_dssp             TTC
T ss_pred             hhC
Confidence            543

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.44  E-value=0.06  Score=52.43  Aligned_cols=37  Identities=27%  Similarity=0.327  Sum_probs=32.3

Q ss_pred             CCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCC
Q 019978           40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG   82 (333)
Q Consensus        40 ~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~   82 (333)
                      .-...||+|+|+|+-|.++|..+..- |     . +|+++|++.
T Consensus       185 ~l~d~kVVi~GAGaAG~~iA~ll~~~-G-----a~~I~v~D~~G  222 (398)
T 2a9f_A          185 SLDEVSIVVNGGGSAGLSITRKLLAA-G-----ATKVTVVDKFG  222 (398)
T ss_dssp             CTTSCEEEEECCSHHHHHHHHHHHHH-T-----CCEEEEEETTE
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHc-C-----CCeEEEEECCC
Confidence            34457999999999999999999988 8     5 899999974

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=94.44  E-value=0.1  Score=50.62  Aligned_cols=39  Identities=18%  Similarity=0.283  Sum_probs=30.0

Q ss_pred             HhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       157 a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                      .+.++|+||+|+|...-.++...+..   .   ++.||.++.-+-
T Consensus        90 ~~~~~Dvvf~alp~~~s~~~~~~~~~---~---G~~VIDlSa~fR  128 (381)
T 3hsk_A           90 NFLECDVVFSGLDADVAGDIEKSFVE---A---GLAVVSNAKNYR  128 (381)
T ss_dssp             TGGGCSEEEECCCHHHHHHHHHHHHH---T---TCEEEECCSTTT
T ss_pred             hcccCCEEEECCChhHHHHHHHHHHh---C---CCEEEEcCCccc
Confidence            35789999999999988888887643   3   677888776543

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=94.44  E-value=0.031  Score=54.22  Aligned_cols=33  Identities=27%  Similarity=0.324  Sum_probs=30.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ++|+|||+|..|.++|..|++. |     ++|+++++.+
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~-G-----~~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQH-D-----VDVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHT-T-----CEEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHC-C-----CeEEEEcCCC
Confidence            4899999999999999999999 8     9999999875

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=94.43  E-value=0.033  Score=51.75  Aligned_cols=32  Identities=19%  Similarity=0.249  Sum_probs=30.1

Q ss_pred             EEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        46 I~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      |+|||+|.-|++.|..|++. |     ++|+++++.++
T Consensus         7 ViIVGaGpaGl~~A~~La~~-G-----~~V~v~Er~~~   38 (397)
T 3oz2_A            7 VLVVGGGPGGSTAARYAAKY-G-----LKTLMIEKRPE   38 (397)
T ss_dssp             EEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence            99999999999999999999 8     99999998764

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=94.39  E-value=0.049  Score=52.28  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=21.6

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDS   65 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~   65 (333)
                      .++||+|||+|.||+.++..+.+.
T Consensus         3 k~i~vgIiG~G~VG~~~~~~l~~~   26 (358)
T 1ebf_A            3 KVVNVAVIGAGVVGSAFLDQLLAM   26 (358)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHC
T ss_pred             ceEEEEEEecCHHHHHHHHHHHhc
Confidence            457999999999999999999875

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=94.37  E-value=0.071  Score=49.39  Aligned_cols=36  Identities=17%  Similarity=0.092  Sum_probs=32.4

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      +|+|.|.|+ |.+|+.++..|.+. |     ++|+..+|+...
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~   61 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLKL-N-----QVVIGLDNFSTG   61 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCSSC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCCCCC
Confidence            379999996 99999999999999 8     999999997653

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=94.34  E-value=0.098  Score=50.23  Aligned_cols=39  Identities=26%  Similarity=0.270  Sum_probs=29.6

Q ss_pred             HhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       157 a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                      .+.++|+||+|+|...-.++...+..   .   ++.+|.++.-+-
T Consensus        76 ~~~~vDvvf~a~p~~~s~~~a~~~~~---~---G~~vIDlSa~~R  114 (359)
T 4dpl_A           76 LMDDVDIIFSPLPQGAAGPVEEQFAK---E---GFPVISNSPDHR  114 (359)
T ss_dssp             GCTTCCEEEECCCTTTHHHHHHHHHH---T---TCEEEECSSTTT
T ss_pred             HhcCCCEEEECCChHHHHHHHHHHHH---C---CCEEEEcCCCcc
Confidence            35789999999999988888777643   3   677888775543

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=94.34  E-value=0.098  Score=50.23  Aligned_cols=39  Identities=26%  Similarity=0.270  Sum_probs=29.6

Q ss_pred             HhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       157 a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                      .+.++|+||+|+|...-.++...+..   .   ++.+|.++.-+-
T Consensus        76 ~~~~vDvvf~a~p~~~s~~~a~~~~~---~---G~~vIDlSa~~R  114 (359)
T 4dpk_A           76 LMDDVDIIFSPLPQGAAGPVEEQFAK---E---GFPVISNSPDHR  114 (359)
T ss_dssp             GCTTCCEEEECCCTTTHHHHHHHHHH---T---TCEEEECSSTTT
T ss_pred             HhcCCCEEEECCChHHHHHHHHHHHH---C---CCEEEEcCCCcc
Confidence            35789999999999988888777643   3   677888775543

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=94.32  E-value=0.051  Score=45.98  Aligned_cols=36  Identities=22%  Similarity=0.240  Sum_probs=32.9

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      |+|.|.|+ |.+|..++..|.+. |     ++|++++|+++..
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~-g-----~~V~~~~r~~~~~   40 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQA-G-----YEVTVLVRDSSRL   40 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCGGGS
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHC-C-----CeEEEEEeChhhc
Confidence            79999998 99999999999999 8     9999999987643

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=94.31  E-value=0.044  Score=51.36  Aligned_cols=40  Identities=8%  Similarity=0.080  Sum_probs=33.4

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+|||.|.|+ |.+|+.++..|.+..|     ++|++.+|+++...
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g-----~~V~~~~r~~~~~~   63 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTD-----WEVFGMDMQTDRLG   63 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSS-----CEEEEEESCCTTTG
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCC-----CEEEEEeCChhhhh
Confidence            3589999995 9999999999988624     89999999886543

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=94.31  E-value=0.026  Score=56.11  Aligned_cols=35  Identities=26%  Similarity=0.360  Sum_probs=31.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      .+|.|||+|..|.++|..|++. |     ++|+++++.+..
T Consensus        12 ~dVlIVGaGpaGl~~A~~La~~-G-----~~v~vlE~~~~~   46 (500)
T 2qa1_A           12 AAVIVVGAGPAGMMLAGELRLA-G-----VEVVVLERLVER   46 (500)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESCCC-
T ss_pred             CCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEeCCCCC
Confidence            5899999999999999999999 8     999999987653

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=94.29  E-value=0.037  Score=47.96  Aligned_cols=36  Identities=25%  Similarity=0.265  Sum_probs=32.7

Q ss_pred             ceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        44 ~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      |||.|.| +|.+|..++..|++. |     ++|++.+|+++..
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~~~~   37 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTT-D-----YQIYAGARKVEQV   37 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTS-S-----CEEEEEESSGGGS
T ss_pred             CeEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCccch
Confidence            6999999 599999999999999 8     9999999998654

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=94.28  E-value=0.055  Score=50.58  Aligned_cols=33  Identities=27%  Similarity=0.405  Sum_probs=30.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      ...|+|||+|.+|.+.|..|++. |     ++|+++++.
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~-G-----~~V~vle~~   38 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARK-G-----YSVHILARD   38 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-C-----CEEEEEecc
Confidence            46899999999999999999999 8     999999975

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=94.26  E-value=0.048  Score=49.29  Aligned_cols=33  Identities=9%  Similarity=-0.030  Sum_probs=30.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      +++|+|||+|.-|.+.|..|++. |     ++|++++++
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~   47 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARY-M-----LKTLVIGET   47 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESS
T ss_pred             ccCEEEECccHHHHHHHHHHHHC-C-----CcEEEEecc
Confidence            36899999999999999999999 8     999999986

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=94.11  E-value=0.13  Score=50.92  Aligned_cols=46  Identities=13%  Similarity=0.206  Sum_probs=34.2

Q ss_pred             cCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          152 TNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       152 ~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                      .++.++-+..|++++++|+....+++++.... .    -..++.++.|+..
T Consensus        56 ~sl~~lp~~~Dlavi~vp~~~~~~~v~e~~~~-G----i~~vv~~s~G~~e  101 (457)
T 2csu_A           56 KSVKDIPDEIDLAIIVVPKRFVKDTLIQCGEK-G----VKGVVIITAGFGE  101 (457)
T ss_dssp             SSTTSCSSCCSEEEECSCHHHHHHHHHHHHHH-T----CCEEEECCCSSTT
T ss_pred             CCHHHcCCCCCEEEEecCHHHHHHHHHHHHHc-C----CCEEEEecCCCCc
Confidence            44444445789999999999999999988763 1    2356778889853

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=94.07  E-value=0.048  Score=52.13  Aligned_cols=33  Identities=33%  Similarity=0.422  Sum_probs=30.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      |+|+|||+|..|.+.|..|++. |     ++|+++.+++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~-G-----~~V~vlE~~~   33 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARN-G-----HEIIVLEKSA   33 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT-T-----CEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence            6899999999999999999999 8     8999999864

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=94.07  E-value=0.26  Score=51.77  Aligned_cols=34  Identities=24%  Similarity=0.358  Sum_probs=30.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||.|||+|.+|+.++..|+.. |.    -+++++|.+.
T Consensus       412 ~~vlvvG~GglG~~~~~~L~~~-Gv----g~i~l~D~d~  445 (805)
T 2nvu_B          412 CKVLVIGAGGLGCELLKNLALS-GF----RQIHVIDMDT  445 (805)
T ss_dssp             CCEEEECCSSHHHHHHHHHHTT-TC----CEEEEEECCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CC----CcEEEECCCe
Confidence            5899999999999999999999 82    3799999875

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=93.92  E-value=0.63  Score=48.01  Aligned_cols=34  Identities=26%  Similarity=0.312  Sum_probs=30.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||.|||+|.+|+.++..|+.. |.    -+++++|.+.
T Consensus        18 s~VlVVGaGGLGsevak~La~a-GV----G~ItlvD~D~   51 (640)
T 1y8q_B           18 GRVLVVGAGGIGCELLKNLVLT-GF----SHIDLIDLDT   51 (640)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TC----CEEEEEECCB
T ss_pred             CeEEEECcCHHHHHHHHHHHHc-CC----CeEEEecCCE
Confidence            6999999999999999999999 82    4799999875

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=93.82  E-value=0.16  Score=48.22  Aligned_cols=34  Identities=18%  Similarity=0.262  Sum_probs=25.6

Q ss_pred             CceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 019978           43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWR   79 (333)
Q Consensus        43 ~~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~   79 (333)
                      ++||+|+| .|.+|..+...|.++ + + +..+++.+.
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~-~-~-p~~elv~i~   37 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQER-E-F-PVDELFLLA   37 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHT-T-C-CEEEEEEEE
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcC-C-C-CCEEEEEEE
Confidence            58999999 799999999998876 3 1 115666554

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=93.82  E-value=0.069  Score=53.56  Aligned_cols=35  Identities=23%  Similarity=0.283  Sum_probs=31.5

Q ss_pred             CCceEEEECCCHHHHHHHHHHHH---hcCCCCCCeeEEEEecCC
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~---~~G~~~~~~~V~l~~r~~   82 (333)
                      ..++|+|||+|..|.+.|..|++   . |     ++|+++++.+
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~-G-----~~V~liE~~~   61 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQG-T-----ADITLLQAPD   61 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTT-S-----SEEEEEECCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCC-C-----CcEEEEeCCC
Confidence            35689999999999999999999   7 7     8999999864

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=93.81  E-value=0.19  Score=48.00  Aligned_cols=38  Identities=13%  Similarity=-0.003  Sum_probs=29.3

Q ss_pred             HhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       157 a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                      .+.++|+||+|+|...-.+.+..+..   .   ++.+|+++.-+
T Consensus        60 ~~~~~Dvvf~a~~~~~s~~~a~~~~~---~---G~~vID~Sa~~   97 (344)
T 3tz6_A           60 DPSGLDIALFSAGSAMSKVQAPRFAA---A---GVTVIDNSSAW   97 (344)
T ss_dssp             CCTTCSEEEECSCHHHHHHHHHHHHH---T---TCEEEECSSTT
T ss_pred             HhccCCEEEECCChHHHHHHHHHHHh---C---CCEEEECCCcc
Confidence            35789999999999888888777643   3   67888877544

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=93.77  E-value=0.058  Score=51.36  Aligned_cols=33  Identities=27%  Similarity=0.428  Sum_probs=30.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      |+|+|||+|..|.+.|..|+++ |     ++|+++.++.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~-G-----~~V~vlE~~~   33 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKA-G-----HEVEVFERLP   33 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHT-T-----CEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-C-----CceEEEeCCC
Confidence            6899999999999999999999 8     9999998865

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=93.73  E-value=0.049  Score=49.70  Aligned_cols=35  Identities=9%  Similarity=0.061  Sum_probs=31.6

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .+++|+|||+|.-|.+.|..|++. |     ++|+++++.+
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~vie~~~   55 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARA-E-----IKPILYEGMM   55 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT-T-----CCCEEECCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEecCC
Confidence            347999999999999999999999 8     9999999854

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=93.69  E-value=0.072  Score=51.13  Aligned_cols=35  Identities=23%  Similarity=0.365  Sum_probs=31.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~   83 (333)
                      ...|.|||+|..|.+.|..|++. |     + +|+++++...
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~-G-----~~~V~vlE~~~~   41 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARR-G-----YTNVTVLDPYPV   41 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHT-T-----CCCEEEEESSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHc-C-----CCcEEEEeCCCC
Confidence            35899999999999999999999 8     8 8999998753

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=93.68  E-value=0.065  Score=49.42  Aligned_cols=33  Identities=18%  Similarity=0.281  Sum_probs=31.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ..|+|||+|..|.+.|..|++. |     ++|+++++.+
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~~-G-----~~V~vlE~~~   37 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAAG-G-----HEVLVAEAAE   37 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhC-C-----CeEEEEeCCC
Confidence            5899999999999999999999 8     9999999974

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=93.68  E-value=0.043  Score=53.62  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=30.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      |++|+|||+|--|.+-|..|+++ |     ++|+++.++.
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~-G-----~~V~VlEa~~   34 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAA-G-----IPVLLLEQRD   34 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHT-T-----CCEEEECCC-
T ss_pred             CCCEEEECCcHHHHHHHHHHHHC-C-----CcEEEEccCC
Confidence            67999999999999999999999 8     9999998754

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=93.65  E-value=0.068  Score=50.80  Aligned_cols=35  Identities=31%  Similarity=0.449  Sum_probs=32.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .++|+|||+|..|.++|..|++. |     ++|+++++.+.
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~   39 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDA-G-----VDVDVYERSPQ   39 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence            36899999999999999999999 8     99999998764

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=93.52  E-value=0.07  Score=50.94  Aligned_cols=35  Identities=9%  Similarity=0.048  Sum_probs=31.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHH---hcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~---~~G~~~~~~~V~l~~r~~~   83 (333)
                      |++|+|||+|.-|.+.|..|++   . |     ++|+++++++.
T Consensus         1 m~~VvIIGgG~aGl~aA~~L~~~~~~-g-----~~V~vie~~~~   38 (409)
T 3h8l_A            1 MTKVLVLGGRFGALTAAYTLKRLVGS-K-----ADVKVINKSRF   38 (409)
T ss_dssp             -CEEEEECSSHHHHHHHHHHHHHHGG-G-----SEEEEEESSSE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCC-C-----CeEEEEeCCCC
Confidence            4689999999999999999999   7 6     89999998874

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=93.51  E-value=0.076  Score=51.51  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=31.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCe--eEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~--~V~l~~r~~   82 (333)
                      .++|+|||+|..|.+.|..|++. |     +  +|+++++.+
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~-G-----~~~~V~v~E~~~   41 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAE-K-----AFDQVTLFERRG   41 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-T-----CCSEEEEECSSS
T ss_pred             CCEEEEECccHHHHHHHHHHHhc-C-----CCCCeEEEecCC
Confidence            47999999999999999999998 8     7  999999875

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=93.50  E-value=0.074  Score=49.76  Aligned_cols=33  Identities=24%  Similarity=0.280  Sum_probs=30.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ..|+|||+|..|.+.|..|++. |     ++|+++++..
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~-G-----~~V~vie~~~   36 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQ-G-----VKTLLVDAFD   36 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhC-C-----CeEEEEeCCC
Confidence            5899999999999999999999 8     8999999864

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=93.41  E-value=0.08  Score=49.90  Aligned_cols=35  Identities=20%  Similarity=0.261  Sum_probs=32.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .++|+|||+|..|.++|..|++. |     ++|+++++.+.
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~-G-----~~v~viE~~~~   45 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQN-G-----WDVRLHEKSSE   45 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-C-----CCEEEEecCCC
Confidence            36899999999999999999999 8     99999998764

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=93.38  E-value=0.073  Score=48.14  Aligned_cols=37  Identities=16%  Similarity=0.177  Sum_probs=32.5

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +++.|.|+ |.+|.++|..|++. |     ++|.+.+|+++.++
T Consensus        31 k~vlVTGas~GIG~aia~~l~~~-G-----~~Vi~~~r~~~~~~   68 (281)
T 3ppi_A           31 ASAIVSGGAGGLGEATVRRLHAD-G-----LGVVIADLAAEKGK   68 (281)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCChHHHH
Confidence            57888896 89999999999999 8     89999999986554

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=93.33  E-value=0.13  Score=47.72  Aligned_cols=32  Identities=13%  Similarity=0.164  Sum_probs=27.6

Q ss_pred             ceEEEECCCH-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           44 LRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        44 ~kI~IIGaG~-mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      +++.|||.|. +|..+|..|... |     ..|+++.+.
T Consensus       151 k~vvVvG~s~iVG~plA~lL~~~-g-----AtVtv~~~~  183 (276)
T 3ngx_A          151 NTVTIVNRSPVVGRPLSMMLLNR-N-----YTVSVCHSK  183 (276)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHT-T-----CEEEEECTT
T ss_pred             CEEEEEcCChHHHHHHHHHHHHC-C-----CeEEEEeCC
Confidence            7999999975 899999999998 7     889888553

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*

Probab=93.31  E-value=0.72  Score=43.15  Aligned_cols=165  Identities=16%  Similarity=0.144  Sum_probs=92.1

Q ss_pred             CCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhC
Q 019978          144 PLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATG  222 (333)
Q Consensus       144 ~~~~i~~t~d~~ea~~~aDlIIlaVps~~-~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg  222 (333)
                      +-.++++++|-.||++++|++|+.+|-.. ..++++++.+++++   +.+|.. +=.+++-        -+...+++ ++
T Consensus       125 EdaGVkVtsDD~EAvk~AEi~IlftPfG~~t~~Iakkii~~lpE---gAII~n-TCTipp~--------~ly~~le~-l~  191 (358)
T 2b0j_A          125 EDVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPE---GAIVTH-ACTIPTT--------KFAKIFKD-LG  191 (358)
T ss_dssp             GGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCT---TCEEEE-CSSSCHH--------HHHHHHHH-TT
T ss_pred             HHcCcEeecchHHHhcCCCEEEEecCCCCCcHHHHHHHHhhCcC---CCEEec-ccCCCHH--------HHHHHHHH-hC
Confidence            33588999999999999999999999865 89999999999998   665543 2223321        11122333 55


Q ss_pred             CCCCcEEEEc-CCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEE-ecCChhHHH--HHHHHHHHHHH-HHHHH
Q 019978          223 VPIENILYLG-GPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW-DNGDLVTHE--VMGGLKNVYAI-GAGMV  297 (333)
Q Consensus       223 ~~~~~~~vl~-GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~-~s~Di~gve--~~~alkNv~Ai-~~Gi~  297 (333)
                      +.  .+.+.+ -|.-.- ...|+.....--.+++..+.+.++-.+.+-..| .-.|+++.-  .|.++   .|+ -+|++
T Consensus       192 R~--DvgIsS~HPaaVP-gt~Gq~~~g~~yAtEEqIeklveLaksa~k~ay~vPAdl~SpV~DMgs~v---TAv~~AGiL  265 (358)
T 2b0j_A          192 RE--DLNITSYHPGCVP-EMKGQVYIAEGYASEEAVNKLYEIGKIARGKAFKMPANLIGPVCDMCSAV---TATVYAGLL  265 (358)
T ss_dssp             CT--TSEEEECBCSSCT-TTCCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEEEHHHHHHHHSTTHHH---HHHHHHHHH
T ss_pred             cc--cCCeeccCCCCCC-CCCCccccccccCCHHHHHHHHHHHHHhCCCeEecchhhccchhhhHHHH---HHHHHHHHH
Confidence            32  233332 233221 124433322223456778888888776543333 445776642  33332   233 25665


Q ss_pred             h----ccCCCCCccHH--HHHHHHHHHHHHH-HHCCC
Q 019978          298 A----ALTNESATSKS--VYFAHCTSEMVVM-HGMGR  327 (333)
Q Consensus       298 ~----gl~~~~~n~~~--~l~~~~~~E~~~l-~~~G~  327 (333)
                      +    +....+.+..-  ..+..++.-|..| +.-|.
T Consensus       266 ~Y~~~vtkIlgAP~~mie~q~~esL~tiasLve~~GI  302 (358)
T 2b0j_A          266 AYRDAVTKILGAPADFAQMMADEALTQIHNLMKEKGI  302 (358)
T ss_dssp             HHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            4    22333444222  3444555555555 55543

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=93.31  E-value=0.078  Score=49.64  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=31.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ..+|+|||+|..|.+.|..|++. |     ++|+++++..
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~-G-----~~V~lle~~~   38 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKR-G-----EEVTVIEKRF   38 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence            35899999999999999999999 8     8999999863

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=93.12  E-value=0.097  Score=46.74  Aligned_cols=33  Identities=12%  Similarity=0.049  Sum_probs=30.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .+|+|||+|.-|.+.|..|++. |     ++|+++++++
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~   35 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRA-R-----KNILLVDAGE   35 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCC
Confidence            5899999999999999999999 8     8999999753

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=93.10  E-value=0.074  Score=50.49  Aligned_cols=33  Identities=24%  Similarity=0.516  Sum_probs=30.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .+|+|||+|..|.+.|..|++. |     ++|+++++++
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~-G-----~~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKS-G-----FKVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCC
Confidence            5899999999999999999999 8     8999999875

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=93.08  E-value=0.07  Score=49.69  Aligned_cols=33  Identities=12%  Similarity=0.188  Sum_probs=30.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ..|+|||+|..|.+.|..|++. |     ++|+++++..
T Consensus         3 ~dvvIIG~Gi~Gl~~A~~La~~-G-----~~V~vle~~~   35 (372)
T 2uzz_A            3 YDLIIIGSGSVGAAAGYYATRA-G-----LNVLMTDAHM   35 (372)
T ss_dssp             EEEEESCTTHHHHHHHHHHHHT-T-----CCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence            4799999999999999999999 8     8999999864

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=93.04  E-value=0.087  Score=49.75  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=30.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ..|+|||+|..|.+.|..|++. |     ++|+++++..
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~-G-----~~V~vlE~~~   37 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAER-G-----HRVLVLERHT   37 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence            5899999999999999999999 8     9999999865

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=93.03  E-value=0.085  Score=49.95  Aligned_cols=35  Identities=17%  Similarity=0.323  Sum_probs=32.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .++|+|||+|..|.++|..|++. |     ++|+++++.+.
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~-G-----~~V~viE~~~~   40 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQ-G-----HRVVVVEQARR   40 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhC-C-----CcEEEEeCCCC
Confidence            36899999999999999999999 8     99999998764

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=93.03  E-value=0.09  Score=48.13  Aligned_cols=33  Identities=15%  Similarity=0.159  Sum_probs=30.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      ..+|+|||+|.-|.+.|..|++. |     ++|+++++.
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~   40 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRA-Q-----LSTLILEKG   40 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHc-C-----CcEEEEeCC
Confidence            45899999999999999999998 8     899999987

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=93.03  E-value=0.14  Score=50.96  Aligned_cols=36  Identities=31%  Similarity=0.376  Sum_probs=33.2

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      +|||.|.|+ |.+|+.++..|.+. |     ++|+..+|++..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~-G-----~~V~~l~R~~~~  183 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTG-G-----HEVIQLVRKEPK  183 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESSSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCCCC
Confidence            799999995 99999999999999 8     999999998764

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=92.96  E-value=0.2  Score=46.66  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=27.5

Q ss_pred             ceEEEECCCH-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           44 LRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        44 ~kI~IIGaG~-mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      +++.|||+|. +|..+|..|... |     ..|++..+.
T Consensus       161 k~vvVvGrs~iVG~p~A~lL~~~-g-----AtVtv~h~~  193 (285)
T 3p2o_A          161 KDAVIIGASNIVGRPMATMLLNA-G-----ATVSVCHIK  193 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHT-T-----CEEEEECTT
T ss_pred             CEEEEECCCchHHHHHHHHHHHC-C-----CeEEEEeCC
Confidence            7999999877 699999999998 7     788887543

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=92.95  E-value=0.095  Score=47.22  Aligned_cols=34  Identities=15%  Similarity=0.203  Sum_probs=30.8

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEE-EecC
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRI-WRRP   81 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l-~~r~   81 (333)
                      .+++|+|||+|.-|.+.|..|++. |     ++|++ ++++
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~li~e~~   37 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRG-G-----LKNVVMFEKG   37 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHH-T-----CSCEEEECSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHC-C-----CCeEEEEeCC
Confidence            457999999999999999999999 8     89999 8873

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=92.88  E-value=0.66  Score=44.64  Aligned_cols=41  Identities=17%  Similarity=0.217  Sum_probs=29.6

Q ss_pred             CHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCC--CEEEEeeecC
Q 019978          153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITV--PVIISLAKGV  200 (333)
Q Consensus       153 d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~--~~Ivs~~kGi  200 (333)
                      +.++ +.++|+||+|+|...-.+.+..+..   .   +  +.||+++.-+
T Consensus        58 ~~~~-~~~~Dvvf~a~~~~~s~~~~~~~~~---~---G~k~~VID~ss~f  100 (370)
T 3pzr_A           58 DIES-LKQLDAVITCQGGSYTEKVYPALRQ---A---GWKGYWIDAASTL  100 (370)
T ss_dssp             CHHH-HTTCSEEEECSCHHHHHHHHHHHHH---T---TCCCEEEECSSTT
T ss_pred             ChhH-hccCCEEEECCChHHHHHHHHHHHH---C---CCCEEEEeCCchh
Confidence            4443 6799999999999888888777643   2   3  4788876543

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=92.87  E-value=0.088  Score=49.69  Aligned_cols=34  Identities=24%  Similarity=0.377  Sum_probs=31.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .+|+|||+|..|.++|..|++. |     ++|+++++.+.
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~   36 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKA-G-----IDNVILERQTP   36 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHH-T-----CCEEEECSSCH
T ss_pred             ccEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeCCCC
Confidence            4799999999999999999999 8     99999998764

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=92.84  E-value=0.1  Score=49.75  Aligned_cols=34  Identities=21%  Similarity=0.345  Sum_probs=31.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCee-EEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~-V~l~~r~~~   83 (333)
                      .+|+|||+|..|.++|..|++. |     ++ |+++++.+.
T Consensus         5 ~dVvIVGaG~aGl~~A~~L~~~-G-----~~~v~v~E~~~~   39 (410)
T 3c96_A            5 IDILIAGAGIGGLSCALALHQA-G-----IGKVTLLESSSE   39 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CSEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEECCCC
Confidence            5899999999999999999999 8     89 999999764

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=92.79  E-value=0.21  Score=46.80  Aligned_cols=32  Identities=16%  Similarity=0.123  Sum_probs=27.6

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 019978           43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR   80 (333)
Q Consensus        43 ~~kI~IIGaG~-mG~alA~~La~~~G~~~~~~~V~l~~r   80 (333)
                      .++++|||+|. +|..+|..|... |     ..|++..+
T Consensus       165 gk~vvVIG~s~iVG~p~A~lL~~~-g-----AtVtv~hs  197 (301)
T 1a4i_A          165 GRHAVVVGRSKIVGAPMHDLLLWN-N-----ATVTTCHS  197 (301)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHT-T-----CEEEEECT
T ss_pred             CCEEEEECCCchHHHHHHHHHHhC-C-----CeEEEEEC
Confidence            47999999995 799999999988 7     78888753

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=92.76  E-value=0.11  Score=49.74  Aligned_cols=34  Identities=29%  Similarity=0.405  Sum_probs=31.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      |+|+|||+|..|.+.|..|++. |     ++|+++++++.
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~-g-----~~v~v~E~~~~   37 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEK-G-----HQVHIIDQRDH   37 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-T-----CEEEEEESSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHC-C-----CcEEEEEecCC
Confidence            7999999999999999999998 8     99999998764

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=92.73  E-value=0.16  Score=50.35  Aligned_cols=37  Identities=19%  Similarity=0.155  Sum_probs=32.9

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ....+|+|||+|..|.++|..|++. |     .+|+++++.+.
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~-G-----~~V~liEk~~~  126 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALL-G-----ARVVLVEKRIK  126 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCSS
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHC-C-----CeEEEEEeccc
Confidence            3457999999999999999999999 8     99999998753

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=92.72  E-value=0.12  Score=48.04  Aligned_cols=49  Identities=20%  Similarity=0.159  Sum_probs=39.6

Q ss_pred             HHhhhHHHHhhccCCCCCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           26 EERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ++....+.+.+.+.   +|+|.|.|+ |.+|+.++..|++. |     ++|++.+|++.
T Consensus        13 ~~~~~~~~~~~~~~---~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~   62 (352)
T 1sb8_A           13 MSRYEELRKELPAQ---PKVWLITGVAGFIGSNLLETLLKL-D-----QKVVGLDNFAT   62 (352)
T ss_dssp             CCHHHHHHHHHHHS---CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCSS
T ss_pred             HHHHHhhchhcCcc---CCeEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCCCc
Confidence            44555666655543   479999998 99999999999999 8     99999999764

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=92.71  E-value=0.11  Score=52.26  Aligned_cols=41  Identities=10%  Similarity=-0.010  Sum_probs=35.7

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      ...++|.|+|+|.+|..++..|.+. |     ++|++++.+++.+++
T Consensus       125 ~~~~hviI~G~g~~g~~la~~L~~~-~-----~~vvvid~~~~~~~~  165 (565)
T 4gx0_A          125 DTRGHILIFGIDPITRTLIRKLESR-N-----HLFVVVTDNYDQALH  165 (565)
T ss_dssp             TCCSCEEEESCCHHHHHHHHHTTTT-T-----CCEEEEESCHHHHHH
T ss_pred             ccCCeEEEECCChHHHHHHHHHHHC-C-----CCEEEEECCHHHHHH
Confidence            3457899999999999999999988 7     999999999876543

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=92.71  E-value=0.22  Score=46.36  Aligned_cols=31  Identities=23%  Similarity=0.274  Sum_probs=26.8

Q ss_pred             ceEEEECCCH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 019978           44 LRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR   80 (333)
Q Consensus        44 ~kI~IIGaG~-mG~alA~~La~~~G~~~~~~~V~l~~r   80 (333)
                      +++.|||+|. +|..+|..|... |     ..|++..+
T Consensus       162 k~vvVIG~s~iVG~p~A~lL~~~-g-----AtVtv~hs  193 (285)
T 3l07_A          162 AYAVVVGASNVVGKPVSQLLLNA-K-----ATVTTCHR  193 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHT-T-----CEEEEECT
T ss_pred             CEEEEECCCchhHHHHHHHHHHC-C-----CeEEEEeC
Confidence            6999999877 799999999988 7     78888754

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=92.68  E-value=0.089  Score=52.78  Aligned_cols=36  Identities=14%  Similarity=0.149  Sum_probs=32.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      ...|.|||+|..|.++|..|++. |     .+|+++++.+..
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~-G-----~~V~vlEr~~~~   61 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHR-Q-----VGHLVVEQTDGT   61 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSCSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEeCCCCC
Confidence            35899999999999999999999 8     999999987643

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=92.66  E-value=0.25  Score=46.84  Aligned_cols=22  Identities=23%  Similarity=0.265  Sum_probs=20.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDS   65 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~   65 (333)
                      +||+|+|+|.+|..+++.|.++
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~   25 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNS   25 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH
T ss_pred             eEEEEEccCHHHHHHHHHHHcC
Confidence            5999999999999999999876

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=92.65  E-value=0.17  Score=47.16  Aligned_cols=33  Identities=24%  Similarity=0.221  Sum_probs=28.0

Q ss_pred             CceEEEECCCH-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        43 ~~kI~IIGaG~-mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      .++++|||+|. +|..+|..|... |     ..|++..+.
T Consensus       159 gk~vvVIG~s~iVG~p~A~lL~~~-g-----AtVtv~hs~  192 (288)
T 1b0a_A          159 GLNAVVIGASNIVGRPMSMELLLA-G-----CTTTVTHRF  192 (288)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTT-T-----CEEEEECSS
T ss_pred             CCEEEEECCChHHHHHHHHHHHHC-C-----CeEEEEeCC
Confidence            47999999996 699999999988 7     788887543

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=92.61  E-value=0.18  Score=49.56  Aligned_cols=36  Identities=25%  Similarity=0.335  Sum_probs=32.5

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ..++|+|||+|.-|.+.|..|++. |     ++|+++++.+.
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~-G-----~~V~v~e~~~~  156 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAK-G-----YEVHVYDRYDR  156 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH-T-----CCEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccCC
Confidence            347899999999999999999999 8     99999998764

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=92.60  E-value=0.099  Score=50.58  Aligned_cols=33  Identities=15%  Similarity=0.152  Sum_probs=30.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCe--eEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~--~V~l~~r~~   82 (333)
                      ++|+|||+|..|.+.|..|++. |     +  +|+++.++.
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~-G-----~~~~V~vlEa~~   37 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRA-P-----CPPKVVLVESSE   37 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTS-S-----SCCEEEEECSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhC-C-----CCCcEEEEeCCC
Confidence            6899999999999999999999 8     8  999998754

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=92.59  E-value=0.12  Score=47.43  Aligned_cols=64  Identities=19%  Similarity=0.006  Sum_probs=45.1

Q ss_pred             cccccccccchHHhhhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      .|-++-+|-...--+.++++. +.. -..+++.|+|+|.+|.+++..|++.      + +|++++|+.+++++
T Consensus       102 ~g~l~g~nTd~~G~~~~L~~~-~~~-l~~k~vlV~GaGgiG~aia~~L~~~------G-~V~v~~r~~~~~~~  165 (287)
T 1nvt_A          102 DGKAIGYNTDGIGARMALEEE-IGR-VKDKNIVIYGAGGAARAVAFELAKD------N-NIIIANRTVEKAEA  165 (287)
T ss_dssp             TTEEEEECCHHHHHHHHHHHH-HCC-CCSCEEEEECCSHHHHHHHHHHTSS------S-EEEEECSSHHHHHH
T ss_pred             CCEEEEecCCHHHHHHHHHHh-CCC-cCCCEEEEECchHHHHHHHHHHHHC------C-CEEEEECCHHHHHH
Confidence            444445566555556666542 221 2236899999999999999999877      4 89999999876543

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=92.59  E-value=0.14  Score=43.57  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=31.2

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ++|||.|.|+ |.+|.+++..|+ . |     ++|++.+|+++
T Consensus         2 ~kM~vlVtGasg~iG~~~~~~l~-~-g-----~~V~~~~r~~~   37 (202)
T 3d7l_A            2 NAMKILLIGASGTLGSAVKERLE-K-K-----AEVITAGRHSG   37 (202)
T ss_dssp             CSCEEEEETTTSHHHHHHHHHHT-T-T-----SEEEEEESSSS
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHH-C-C-----CeEEEEecCcc
Confidence            4579999996 999999999999 8 8     99999999864

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=92.53  E-value=0.67  Score=44.47  Aligned_cols=41  Identities=17%  Similarity=0.260  Sum_probs=29.5

Q ss_pred             CHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCC--CEEEEeeecC
Q 019978          153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITV--PVIISLAKGV  200 (333)
Q Consensus       153 d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~--~~Ivs~~kGi  200 (333)
                      +.++ +.++|+||+|+|.....+.+..+..   .   +  .+||+.+.-+
T Consensus        59 ~~~~-~~~~DvVf~a~g~~~s~~~a~~~~~---~---G~k~vVID~ss~~  101 (367)
T 1t4b_A           59 DLEA-LKALDIIVTCQGGDYTNEIYPKLRE---S---GWQGYWIDAASSL  101 (367)
T ss_dssp             CHHH-HHTCSEEEECSCHHHHHHHHHHHHH---T---TCCCEEEECSSTT
T ss_pred             ChHH-hcCCCEEEECCCchhHHHHHHHHHH---C---CCCEEEEcCChhh
Confidence            4444 5689999999998888887777654   2   3  3788876544

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=92.52  E-value=0.17  Score=47.39  Aligned_cols=32  Identities=22%  Similarity=0.262  Sum_probs=28.2

Q ss_pred             ceEEEECCCH-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           44 LRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        44 ~kI~IIGaG~-mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      +++.|||.|. +|..+|..|... |     ..|+++.+.
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~-g-----AtVtv~~~~  198 (300)
T 4a26_A          166 KRAVVLGRSNIVGAPVAALLMKE-N-----ATVTIVHSG  198 (300)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHT-T-----CEEEEECTT
T ss_pred             CEEEEECCCchHHHHHHHHHHHC-C-----CeEEEEeCC
Confidence            6999999876 799999999998 7     889988764

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=92.51  E-value=0.17  Score=50.41  Aligned_cols=35  Identities=26%  Similarity=0.160  Sum_probs=32.2

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ..++|+|||+|.-|.+.|..|++. |     ++|+++++++
T Consensus        42 ~~~dVvIIGgG~aGl~aA~~l~~~-G-----~~V~liE~~~   76 (523)
T 1mo9_A           42 REYDAIFIGGGAAGRFGSAYLRAM-G-----GRQLIVDRWP   76 (523)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeCCC
Confidence            347899999999999999999998 8     9999999986

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=92.48  E-value=0.14  Score=46.37  Aligned_cols=36  Identities=25%  Similarity=0.298  Sum_probs=32.6

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      |||.|.|+ |.+|+.++..|.+. |     ++|++.+|+++..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~~   37 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVEL-G-----YEVVVVDNLSSGR   37 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEECCCSSCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhC-C-----CEEEEEeCCCCCc
Confidence            78999998 99999999999999 8     9999999987543

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=92.39  E-value=0.13  Score=51.03  Aligned_cols=36  Identities=22%  Similarity=0.323  Sum_probs=32.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      .++|.|||+|..|.++|..|++. |     ++|+++++.+..
T Consensus        12 ~~dVlIVGaGpaGl~~A~~La~~-G-----~~v~vlE~~~~~   47 (499)
T 2qa2_A           12 DASVIVVGAGPAGLMLAGELRLG-G-----VDVMVLEQLPQR   47 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESCSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEECCCCC
Confidence            36899999999999999999999 8     999999987653

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=92.39  E-value=0.4  Score=52.03  Aligned_cols=55  Identities=18%  Similarity=0.147  Sum_probs=39.5

Q ss_pred             HhhhHHHHhhccCCCC---CceEEEECCCHHHHHHHHHHHHhcCC-CCCCeeEEEEecCC
Q 019978           27 ERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGY-LRDKVLIRIWRRPG   82 (333)
Q Consensus        27 ~~~~~~~~~~~~~~~~---~~kI~IIGaG~mG~alA~~La~~~G~-~~~~~~V~l~~r~~   82 (333)
                      +|.+...++.|...-.   ..||.|||+|.+|+.++..|+.. |. ..++-+++++|.+.
T Consensus       406 ~Ry~rq~~l~G~~~q~kL~~~~VlvVGaGGlGsevlk~La~~-Gv~~g~~G~i~lvD~D~  464 (1015)
T 3cmm_A          406 SRYDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALL-GLGSGSDGYIVVTDNDS  464 (1015)
T ss_dssp             STTHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHH-TTTCSTTCEEEEECCCB
T ss_pred             hhhhhHHHhcCHHHHHHHhcCeEEEEecCHHHHHHHHHHHHc-CcCcCCCCeEEEEeCCE
Confidence            5666666666643322   36999999999999999999999 81 11112799998775

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=92.34  E-value=0.13  Score=50.42  Aligned_cols=35  Identities=11%  Similarity=0.191  Sum_probs=31.8

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .+||.|||.|..|.+.|..|.+. |     ++|+++|+++.
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~-G-----~~V~~~D~~~~   43 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKL-G-----AIVTVNDGKPF   43 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHT-T-----CEEEEEESSCG
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhC-C-----CEEEEEeCCcc
Confidence            36999999999999999999999 8     99999999763

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=92.32  E-value=0.14  Score=46.43  Aligned_cols=35  Identities=23%  Similarity=0.241  Sum_probs=32.3

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +|+|.|.|+ |.+|+.++..|.+. |     ++|++.+|++.
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVAS-G-----EEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-T-----CCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHC-C-----CEEEEEecCCc
Confidence            479999998 99999999999999 8     99999999875

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=92.24  E-value=0.31  Score=46.25  Aligned_cols=23  Identities=30%  Similarity=0.683  Sum_probs=20.4

Q ss_pred             CceEEEEC-CCHHHHHHHHHHHHh
Q 019978           43 PLRIVGVG-AGAWGSVFTAMLQDS   65 (333)
Q Consensus        43 ~~kI~IIG-aG~mG~alA~~La~~   65 (333)
                      +|||+|+| .|.+|..+...|.++
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~   29 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDER   29 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhC
Confidence            37999999 599999999999865

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=92.23  E-value=0.13  Score=47.76  Aligned_cols=33  Identities=27%  Similarity=0.373  Sum_probs=30.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~   82 (333)
                      ++|+|||+|..|.+.|..|++. |     + +|+++++++
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~-g-----~~~v~lie~~~   38 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDF-G-----ITDVIILEKGT   38 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-T-----CCCEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHc-C-----CCcEEEEecCC
Confidence            6899999999999999999998 8     8 899999874

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=92.20  E-value=0.13  Score=47.64  Aligned_cols=38  Identities=18%  Similarity=0.252  Sum_probs=30.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCC-CCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYL-RDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~-~~~~~V~l~~r~~   82 (333)
                      |.|+|||+|..|.+.|..|++. |.. .++++|+++++..
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~-G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHER-YHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-HTTTSSSCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHh-ccccCCCceEEEEECCC
Confidence            6899999999999999999998 400 0116899999874

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=92.16  E-value=0.17  Score=44.35  Aligned_cols=36  Identities=17%  Similarity=0.207  Sum_probs=32.2

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      ++|.|.|+ |.+|.+++..|++. |     ++|++.+|+++..
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~-g-----~~V~~~~r~~~~~   38 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARA-G-----HTVIGIDRGQADI   38 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSSSSE
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhC-C-----CEEEEEeCChhHc
Confidence            57999997 99999999999999 8     9999999987643

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=92.16  E-value=0.13  Score=49.09  Aligned_cols=33  Identities=18%  Similarity=0.182  Sum_probs=30.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ++|+|||+|..|.+.|..|++. |     ++|+++.++.
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~-G-----~~V~vlE~~~   34 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNA-G-----KKVLLLEGGE   34 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHc-C-----CeEEEEecCC
Confidence            5899999999999999999999 8     9999998754

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=92.16  E-value=1.2  Score=35.62  Aligned_cols=36  Identities=17%  Similarity=0.131  Sum_probs=27.1

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEE-EecCC
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRI-WRRPG   82 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l-~~r~~   82 (333)
                      ..+++.|+|+|..|..++..+.++.|     ++|.. ++.++
T Consensus         3 ~~~~vlIiGaG~~g~~l~~~l~~~~g-----~~vvg~~d~~~   39 (141)
T 3nkl_A            3 AKKKVLIYGAGSAGLQLANMLRQGKE-----FHPIAFIDDDR   39 (141)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHSSS-----EEEEEEECSCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-----cEEEEEEECCc
Confidence            34689999999999999999977523     77664 44443

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=92.12  E-value=0.15  Score=46.63  Aligned_cols=35  Identities=20%  Similarity=0.150  Sum_probs=31.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .++|+|||+|.-|.+.|..|++. |     ++|+++++++.
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~~   39 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMR-G-----LSFRFVDPLPE   39 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSSS
T ss_pred             cCcEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCCC
Confidence            46899999999999999999998 8     99999998753

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=92.09  E-value=1.3  Score=44.65  Aligned_cols=50  Identities=20%  Similarity=0.159  Sum_probs=37.5

Q ss_pred             hhhHHHHhhccCCCC---CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           28 RLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        28 ~~~~~~~~~~~~~~~---~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      |.+.-.++.|...-.   ..||.|||+|..|+.++..|+.. |.    -+++++|.+.
T Consensus        14 rY~Rqi~l~G~~~q~~L~~~~VlvvG~GGlGseiak~La~a-GV----g~itlvD~D~   66 (531)
T 1tt5_A           14 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLP-GI----GSFTIIDGNQ   66 (531)
T ss_dssp             HTHHHHHHHHHHHHHHHHHCEEEEECCSHHHHHHHHHHHTT-TC----SEEEEECCCB
T ss_pred             HhhHHHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence            555555555533211   26999999999999999999999 82    4789998775

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=92.08  E-value=0.15  Score=50.82  Aligned_cols=34  Identities=24%  Similarity=0.208  Sum_probs=31.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHH---hcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~---~~G~~~~~~~V~l~~r~~   82 (333)
                      +.+|+|||+|..|.+.|..|++   . |     ++|+++++.+
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~-G-----~~V~liE~~~   41 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQ-Q-----ANITLIESAA   41 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCS-S-----CEEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCC-C-----CEEEEECCCC
Confidence            4689999999999999999999   8 7     9999999854

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=91.99  E-value=0.11  Score=51.06  Aligned_cols=33  Identities=18%  Similarity=0.242  Sum_probs=29.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHH---hcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~---~~G~~~~~~~V~l~~r~~   82 (333)
                      .+|+|||+|..|.+.|..|++   . |     ++|+++.+.+
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~-G-----~~V~lvE~~~   38 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDD-R-----IDVTLVESGN   38 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGG-G-----SEEEEEEC--
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCC-C-----CEEEEEecCC
Confidence            589999999999999999999   8 8     8999998864

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=91.98  E-value=0.089  Score=47.16  Aligned_cols=37  Identities=22%  Similarity=0.200  Sum_probs=31.1

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhc-CCCCCCeeEEEEecCCcch
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSY-GYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~-G~~~~~~~V~l~~r~~~~~   85 (333)
                      |+|.|.|+ |.+|+.++..|.+.. |     ++|++.+|+++..
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g-----~~V~~~~r~~~~~   39 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPA-----SQIIAIVRNVEKA   39 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCG-----GGEEEEESCTTTT
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCC-----CeEEEEEcCHHHH
Confidence            58999997 999999999998741 3     8999999987654

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=91.98  E-value=0.13  Score=52.18  Aligned_cols=34  Identities=24%  Similarity=0.316  Sum_probs=30.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ..|+|||+|..|.++|..|++. |     ++|+++++.+.
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~-G-----~~V~VlEr~~~   83 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAG-G-----VGALVLEKLVE   83 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHT-T-----CCEEEEBSCSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEcCCCC
Confidence            3799999999999999999999 8     99999998764

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=91.97  E-value=0.14  Score=46.51  Aligned_cols=35  Identities=14%  Similarity=0.065  Sum_probs=31.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +.+|+|||+|.-|.+.|..|++. |     ++|+++++++.
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~~   41 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMR-Q-----ASVKIIESLPQ   41 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHC-C-----CCEEEEEcCCC
Confidence            35899999999999999999998 8     99999999763

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=91.97  E-value=0.33  Score=44.90  Aligned_cols=34  Identities=21%  Similarity=0.186  Sum_probs=31.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      -++|.|||+|..|..-+..|.+. |     ++|++++.+.
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~-G-----a~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPT-G-----CKLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGG-T-----CEEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhC-C-----CEEEEEcCCC
Confidence            37999999999999999999999 8     9999998764

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=91.97  E-value=0.24  Score=48.81  Aligned_cols=32  Identities=31%  Similarity=0.539  Sum_probs=29.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCe---eEEEEe----cC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV---LIRIWR----RP   81 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~---~V~l~~----r~   81 (333)
                      .||.|+|||..|.+++..|... |     .   +|++++    |+
T Consensus       187 ~rvlvlGAGgAg~aia~~L~~~-G-----~~~~~I~vvd~~~~R~  225 (439)
T 2dvm_A          187 ITLALFGAGAAGFATLRILTEA-G-----VKPENVRVVELVNGKP  225 (439)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-T-----CCGGGEEEEEEETTEE
T ss_pred             CEEEEECccHHHHHHHHHHHHc-C-----CCcCeEEEEEccCCCc
Confidence            6999999999999999999998 8     6   799999    87

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=91.94  E-value=0.14  Score=46.72  Aligned_cols=34  Identities=24%  Similarity=0.302  Sum_probs=31.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .+|+|||+|..|.+.|..|++. |     ++|+++++++.
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~-g-----~~v~vie~~~~   37 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRS-G-----LSYVILDAEAS   37 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHS-S-----CCEEEECCSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEECCCC
Confidence            5899999999999999999999 8     89999998764

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=91.94  E-value=0.19  Score=50.75  Aligned_cols=34  Identities=18%  Similarity=0.258  Sum_probs=31.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ...|.|||+|..|.++|..|++. |     ++|.++++..
T Consensus        32 ~~DVvVIGgGi~G~~~A~~La~r-G-----~~V~LlE~~~   65 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQAAAS-G-----IKTGLIEMQD   65 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence            46899999999999999999999 8     8999998764

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=91.90  E-value=0.15  Score=47.05  Aligned_cols=36  Identities=22%  Similarity=0.275  Sum_probs=31.1

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ..|+|.|.|+ |.+|+.++..|.+. |     ++|++++|+++
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~-G-----~~V~~~~r~~~   54 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQ-G-----RTVRGFDLRPS   54 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHT-T-----CCEEEEESSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhC-C-----CEEEEEeCCCC
Confidence            3479999998 99999999999999 8     99999999875

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=91.88  E-value=0.18  Score=46.03  Aligned_cols=35  Identities=23%  Similarity=0.191  Sum_probs=31.1

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ||+|.|.|+ |.+|+.++..|.+. |     ++|++.+|+..
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~   36 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDE-G-----LSVVVVDNLQT   36 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhC-C-----CEEEEEeCCCc
Confidence            579999996 99999999999999 8     99999998764

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=91.87  E-value=0.8  Score=44.16  Aligned_cols=41  Identities=17%  Similarity=0.252  Sum_probs=29.8

Q ss_pred             CHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCC--CEEEEeeecC
Q 019978          153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITV--PVIISLAKGV  200 (333)
Q Consensus       153 d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~--~~Ivs~~kGi  200 (333)
                      +.+ .+.++|+||+|+|...-.+++..+..   .   +  +.||+++.-+
T Consensus        62 ~~~-~~~~vDvvf~a~~~~~s~~~~~~~~~---~---G~k~~VID~ss~f  104 (377)
T 3uw3_A           62 SID-DLKKCDVIITCQGGDYTNDVFPKLRA---A---GWNGYWIDAASSL  104 (377)
T ss_dssp             CHH-HHHTCSEEEECSCHHHHHHHHHHHHH---T---TCCSEEEECSSTT
T ss_pred             Chh-HhcCCCEEEECCChHHHHHHHHHHHH---C---CCCEEEEeCCccc
Confidence            443 35789999999999888888877643   2   3  3788877543

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=91.85  E-value=0.28  Score=45.63  Aligned_cols=31  Identities=26%  Similarity=0.294  Sum_probs=26.7

Q ss_pred             ceEEEECCCH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 019978           44 LRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR   80 (333)
Q Consensus        44 ~kI~IIGaG~-mG~alA~~La~~~G~~~~~~~V~l~~r   80 (333)
                      ++++|||.|. +|..+|..|... |     ..|++..+
T Consensus       162 k~vvVvGrs~iVG~plA~lL~~~-g-----AtVtv~hs  193 (286)
T 4a5o_A          162 MDAVVVGASNIVGRPMALELLLG-G-----CTVTVTHR  193 (286)
T ss_dssp             CEEEEECTTSTTHHHHHHHHHHT-T-----CEEEEECT
T ss_pred             CEEEEECCCchhHHHHHHHHHHC-C-----CeEEEEeC
Confidence            6999999865 899999999988 7     78888754

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=91.60  E-value=0.16  Score=45.87  Aligned_cols=37  Identities=19%  Similarity=0.244  Sum_probs=32.4

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ++|.|.|+ |.+|.+++..|++. |     ++|++.+|+++..+
T Consensus        33 k~vlVTGasggIG~~la~~l~~~-G-----~~V~~~~r~~~~~~   70 (279)
T 1xg5_A           33 RLALVTGASGGIGAAVARALVQQ-G-----LKVVGCARTVGNIE   70 (279)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEECChHHHH
Confidence            57899986 99999999999999 8     89999999876543

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=91.60  E-value=0.12  Score=47.92  Aligned_cols=33  Identities=18%  Similarity=0.177  Sum_probs=30.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .++|+|||+|..|.+.|..|+ . |     ++|+++++.+
T Consensus         9 ~~dv~IIGaGi~Gls~A~~La-~-G-----~~V~vlE~~~   41 (381)
T 3nyc_A            9 EADYLVIGAGIAGASTGYWLS-A-H-----GRVVVLEREA   41 (381)
T ss_dssp             ECSEEEECCSHHHHHHHHHHT-T-T-----SCEEEECSSS
T ss_pred             cCCEEEECCcHHHHHHHHHHh-C-C-----CCEEEEECCC
Confidence            368999999999999999999 7 7     8999999875

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=91.60  E-value=0.3  Score=47.58  Aligned_cols=35  Identities=26%  Similarity=0.372  Sum_probs=31.6

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .+++|+|||+|..|.+.|..|++. |     ++|+++.++.
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~-g-----~~v~vlE~~~   66 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGA-G-----HQVTVLEASE   66 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHH-T-----CEEEEECSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCC
Confidence            357999999999999999999999 8     8999998764

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=91.59  E-value=0.1  Score=46.75  Aligned_cols=38  Identities=18%  Similarity=0.084  Sum_probs=33.1

Q ss_pred             CceEEEECC-C-HHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGA-G-AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGa-G-~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+++.|.|+ | .+|.+++..|++. |     ++|.+.+|+.+..+
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~-G-----~~V~~~~r~~~~~~   61 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLE-G-----ADVVISDYHERRLG   61 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHC-C-----CEEEEecCCHHHHH
Confidence            368999998 8 4999999999999 8     89999999986554

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=91.57  E-value=0.15  Score=50.61  Aligned_cols=35  Identities=23%  Similarity=0.334  Sum_probs=31.3

Q ss_pred             CCceEEEECCCHHHHHHHHHHHH------------hcCCCCCCeeEEEEecCC
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQD------------SYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~------------~~G~~~~~~~V~l~~r~~   82 (333)
                      ...+|+|||+|.-|.+.|..|++            . |     ++|+++.+++
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~-G-----~~V~liE~~~   52 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSP-K-----LNITLIESPD   52 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSC-S-----CEEEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCC-C-----CeEEEEeCCC
Confidence            34689999999999999999999            7 7     9999999864

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=91.50  E-value=0.22  Score=46.01  Aligned_cols=36  Identities=28%  Similarity=0.211  Sum_probs=31.9

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .+|+|.|.|+ |.+|..++..|.+. |     ++|++.+|+..
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~   62 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMD-G-----HEVTVVDNFFT   62 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCSS
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHC-C-----CEEEEEeCCCc
Confidence            4589999998 99999999999999 8     99999999754

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=91.40  E-value=0.2  Score=46.56  Aligned_cols=35  Identities=14%  Similarity=0.071  Sum_probs=31.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ..+|+|||+|.-|.+.|..|++. |     ++|+++++.+.
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~~   48 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMN-N-----ISCRIIESMPQ   48 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence            36899999999999999999998 8     89999998753

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=91.39  E-value=0.82  Score=49.62  Aligned_cols=34  Identities=9%  Similarity=0.120  Sum_probs=30.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .+|.|||+|..|+.+|..|+.. |.    -.++++|.+.
T Consensus        28 s~VlIvG~GGlGseiak~La~a-GV----g~itlvD~D~   61 (1015)
T 3cmm_A           28 SNVLILGLKGLGVEIAKNVVLA-GV----KSMTVFDPEP   61 (1015)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-CC----SEEEEECCSB
T ss_pred             CEEEEECCChHHHHHHHHHHHc-CC----CeEEEecCCE
Confidence            6999999999999999999999 82    4799998874

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=91.39  E-value=0.25  Score=44.20  Aligned_cols=38  Identities=16%  Similarity=0.247  Sum_probs=33.1

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +++.|.|+ |.+|.++|..|++. |     ++|.+.+|+++.+++
T Consensus         9 k~~lVTGas~gIG~a~a~~l~~~-G-----~~V~~~~r~~~~~~~   47 (255)
T 4eso_A            9 KKAIVIGGTHGMGLATVRRLVEG-G-----AEVLLTGRNESNIAR   47 (255)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence            67889996 89999999999999 8     999999999865543

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=91.36  E-value=0.21  Score=44.73  Aligned_cols=39  Identities=18%  Similarity=0.139  Sum_probs=33.6

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      .++|.|.|+ |.+|.++|..|++. |     ++|.+.+|+++.+++
T Consensus        29 ~k~vlITGas~gIG~~la~~l~~~-G-----~~V~~~~r~~~~~~~   68 (262)
T 3rkr_A           29 GQVAVVTGASRGIGAAIARKLGSL-G-----ARVVLTARDVEKLRA   68 (262)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            368889996 99999999999999 8     899999999876543

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=91.23  E-value=0.2  Score=50.21  Aligned_cols=37  Identities=22%  Similarity=0.243  Sum_probs=31.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +++.|+|+|-+|.+++..|++. |     .+|++++|+.++++
T Consensus       365 k~vlV~GaGGig~aia~~L~~~-G-----~~V~i~~R~~~~a~  401 (523)
T 2o7s_A          365 KTVVVIGAGGAGKALAYGAKEK-G-----AKVVIANRTYERAL  401 (523)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHH-C-----C-CEEEESSHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence            5799999999999999999999 8     88999999976654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=91.17  E-value=0.19  Score=45.39  Aligned_cols=32  Identities=16%  Similarity=0.212  Sum_probs=29.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRP   81 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~   81 (333)
                      ++|+|||+|.-|.+.|..|++. |     + +|++++++
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~-g-----~~~v~lie~~   34 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRG-G-----VKNAVLFEKG   34 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-T-----CSSEEEECSS
T ss_pred             ceEEEECccHHHHHHHHHHHHC-C-----CCcEEEEcCC
Confidence            5899999999999999999998 8     8 99999885

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=91.13  E-value=0.19  Score=48.80  Aligned_cols=34  Identities=12%  Similarity=0.282  Sum_probs=31.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ..|+|||+|..|.+.|..|++. |     .+|+++++.+.
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~-G-----~~V~llEk~~~   60 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEE-G-----ANVLLLDKGNK   60 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHC-C-----CCEEEEECCCC
Confidence            5799999999999999999999 8     89999998764

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=91.05  E-value=0.19  Score=43.99  Aligned_cols=37  Identities=19%  Similarity=0.232  Sum_probs=31.8

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ++|.|.|+ |.+|.++|..|++. |     ++|.+.+|+++.++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~-G-----~~V~~~~r~~~~~~   39 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAE-G-----KATYLTGRSESKLS   39 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHT-T-----CCEEEEESCHHHHH
T ss_pred             CEEEEecCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence            46889996 89999999999999 8     89999999986554

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=90.99  E-value=0.23  Score=50.54  Aligned_cols=33  Identities=27%  Similarity=0.415  Sum_probs=30.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .+|+|||+|..|.+.|..|++. |     ++|+++++.+
T Consensus        24 ~DVvIVGgG~AGl~aA~~Lar~-G-----~~V~LiEr~~   56 (591)
T 3i3l_A           24 SKVAIIGGGPAGSVAGLTLHKL-G-----HDVTIYERSA   56 (591)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHcC-C-----CCEEEEcCCC
Confidence            6899999999999999999999 8     9999999874

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=90.97  E-value=0.25  Score=44.94  Aligned_cols=37  Identities=16%  Similarity=0.134  Sum_probs=32.6

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ++|.|.|+ |.+|.+++..|++. |     ++|++.+|+++..+
T Consensus        19 k~vlVTGasggIG~~la~~l~~~-G-----~~V~~~~r~~~~~~   56 (303)
T 1yxm_A           19 QVAIVTGGATGIGKAIVKELLEL-G-----SNVVIASRKLERLK   56 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence            67999996 99999999999999 8     99999999876543

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=90.97  E-value=0.28  Score=47.72  Aligned_cols=34  Identities=21%  Similarity=0.262  Sum_probs=31.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .++|+|||+|..|.+.|..|++. |     ++|+++.+..
T Consensus        11 ~~~v~IIGaG~aGl~aA~~L~~~-g-----~~v~v~E~~~   44 (489)
T 2jae_A           11 SHSVVVLGGGPAGLCSAFELQKA-G-----YKVTVLEART   44 (489)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeccC
Confidence            47999999999999999999999 8     8999998764

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=90.97  E-value=0.18  Score=46.00  Aligned_cols=38  Identities=18%  Similarity=0.140  Sum_probs=32.8

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +++.|.|+ |.+|.++|..|++. |     ++|.+.+|+++.+++
T Consensus        34 k~~lVTGas~GIG~aia~~la~~-G-----~~V~~~~r~~~~~~~   72 (281)
T 4dry_A           34 RIALVTGGGTGVGRGIAQALSAE-G-----YSVVITGRRPDVLDA   72 (281)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            57888886 89999999999999 8     899999999876543

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=90.96  E-value=0.12  Score=47.37  Aligned_cols=31  Identities=13%  Similarity=0.142  Sum_probs=29.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR   80 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r   80 (333)
                      ++|+|||+|..|.+.|..|++. |     ++|+++++
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~-g-----~~v~lie~   39 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARA-E-----LKPLLFEG   39 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-T-----CCCEEECC
T ss_pred             CCEEEECcCHHHHHHHHHHHHC-C-----CeEEEEec
Confidence            6899999999999999999998 8     99999987

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=90.92  E-value=0.27  Score=47.39  Aligned_cols=34  Identities=35%  Similarity=0.422  Sum_probs=31.5

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      ..++|+|||+|.-|.+.|..|++. |     ++|+++.++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~-G-----~~V~VlE~~   76 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRA-G-----HDVTILEAN   76 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHT-S-----CEEEEECSC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecc
Confidence            457999999999999999999999 8     999999887

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=90.89  E-value=0.52  Score=41.90  Aligned_cols=36  Identities=22%  Similarity=0.141  Sum_probs=30.0

Q ss_pred             eEEEECC-CHHHHHHHHHHHHh-cCCCCCCeeEEEEecCCcch
Q 019978           45 RIVGVGA-GAWGSVFTAMLQDS-YGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        45 kI~IIGa-G~mG~alA~~La~~-~G~~~~~~~V~l~~r~~~~~   85 (333)
                      ||.|.|+ |.+|+.++..|.+. .|     ++|++.+|+++..
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g-----~~V~~~~r~~~~~   38 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPA-----SQIVAIVRNPAKA   38 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCG-----GGEEEEESCTTTC
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCC-----ceEEEEEcChHhh
Confidence            5889997 99999999999874 13     8999999987654

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=90.86  E-value=0.24  Score=45.33  Aligned_cols=37  Identities=19%  Similarity=0.215  Sum_probs=33.2

Q ss_pred             ceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +++.|+| +|.+|.+++..|++. |     .+|++++|++++++
T Consensus       120 k~vlVtGaaGGiG~aia~~L~~~-G-----~~V~i~~R~~~~~~  157 (287)
T 1lu9_A          120 KKAVVLAGTGPVGMRSAALLAGE-G-----AEVVLCGRKLDKAQ  157 (287)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHT-T-----CEEEEEESSHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-c-----CEEEEEECCHHHHH
Confidence            6899999 899999999999999 8     88999999876554

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=90.84  E-value=0.25  Score=48.01  Aligned_cols=35  Identities=23%  Similarity=0.262  Sum_probs=32.3

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ..++|.|||+|.-|.+.|..|++. |     ++|+++++++
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~-g-----~~V~liE~~~   39 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQL-G-----FKTTCIEKRG   39 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH-T-----CCEEEEECSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence            457999999999999999999999 8     9999999985

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=90.83  E-value=0.21  Score=48.26  Aligned_cols=36  Identities=19%  Similarity=0.206  Sum_probs=32.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHH---hcCCCCCCeeEEEEecCCcc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~---~~G~~~~~~~V~l~~r~~~~   84 (333)
                      |++|+|||+|.-|.+.|..|++   . |     ++|+++++++..
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~-g-----~~Vtlie~~~~~   42 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGS-G-----HEVTLISANDYF   42 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGG-G-----SEEEEECSSSEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCC-c-----CEEEEEeCCCCC
Confidence            5799999999999999999998   6 6     899999998753

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=90.83  E-value=0.24  Score=46.78  Aligned_cols=35  Identities=29%  Similarity=0.423  Sum_probs=30.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhc-CCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSY-GYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~-G~~~~~~~V~l~~r~~~   83 (333)
                      |+|+|||+|..|.++|..|++.. |     ++|+++++.+.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G-----~~V~v~E~~~~   36 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPL-----WAIDIVEKNDE   36 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTT-----SEEEEECSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCC-----CCEEEEECCCC
Confidence            58999999999999999999861 4     89999998764

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=90.76  E-value=0.29  Score=45.15  Aligned_cols=35  Identities=17%  Similarity=0.157  Sum_probs=31.6

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +|+|.|.|+ |.+|..++..|++. |     ++|++.+|+++
T Consensus        21 ~~~vlVTGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~   56 (333)
T 2q1w_A           21 MKKVFITGICGQIGSHIAELLLER-G-----DKVVGIDNFAT   56 (333)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCSS
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHC-C-----CEEEEEECCCc
Confidence            479999995 99999999999999 8     99999999764

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=90.72  E-value=0.23  Score=51.19  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=31.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ...|+|||+|..|.+.|..|++. |     ++|++++++.
T Consensus       264 ~~DVvIIGgGiaGlsaA~~La~~-G-----~~V~vlEk~~  297 (689)
T 3pvc_A          264 CDDIAIIGGGIVSALTALALQRR-G-----AVVTLYCADA  297 (689)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHTT-T-----CCEEEEESSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence            36899999999999999999999 8     9999999864

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=90.67  E-value=0.28  Score=44.84  Aligned_cols=37  Identities=16%  Similarity=0.142  Sum_probs=32.2

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      ..|||.|.|+ |.+|+.++..|.+. |     ++|++.+|+++.
T Consensus        13 ~~~~vlVTGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~   50 (335)
T 1rpn_A           13 MTRSALVTGITGQDGAYLAKLLLEK-G-----YRVHGLVARRSS   50 (335)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCCSS
T ss_pred             cCCeEEEECCCChHHHHHHHHHHHC-C-----CeEEEEeCCCcc
Confidence            4589999997 99999999999999 8     999999998754

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=90.65  E-value=0.24  Score=49.08  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=31.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .+|.|||+|..|.++|..|++. |     ++|+++++.+.
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~-G-----~~v~viEr~~~   39 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQ-G-----VRVLVVERRPG   39 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHC-C-----CCEEEEeCCCC
Confidence            6899999999999999999999 8     99999999864

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=90.64  E-value=0.29  Score=45.41  Aligned_cols=39  Identities=18%  Similarity=0.167  Sum_probs=34.0

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      .++|.|.|+ |.+|.+++..|++. |     ++|++.+|+++.+++
T Consensus         8 ~k~vlVTGas~gIG~~la~~l~~~-G-----~~Vv~~~r~~~~~~~   47 (319)
T 3ioy_A            8 GRTAFVTGGANGVGIGLVRQLLNQ-G-----CKVAIADIRQDSIDK   47 (319)
T ss_dssp             TCEEEEETTTSTHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CCEEEEcCCchHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            358999996 99999999999999 8     899999999876543

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=90.64  E-value=0.26  Score=45.02  Aligned_cols=36  Identities=19%  Similarity=0.206  Sum_probs=32.7

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      |+|.|.|+ |.+|+.++..|++. |     ++|++.+|+++..
T Consensus         4 ~~vlVtGatG~iG~~l~~~L~~~-G-----~~V~~~~r~~~~~   40 (345)
T 2z1m_A            4 KRALITGIRGQDGAYLAKLLLEK-G-----YEVYGADRRSGEF   40 (345)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEECSCCSTT
T ss_pred             CEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEECCCccc
Confidence            78999997 99999999999999 8     9999999987643

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=90.64  E-value=0.33  Score=44.54  Aligned_cols=39  Identities=23%  Similarity=0.089  Sum_probs=34.0

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ..|+|.|.|+ |.+|.+++..|++. |     ++|++.+|+.+..+
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~-G-----~~V~~~~r~~~~~~   43 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAH-G-----YDVVIADNLVNSKR   43 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEECCCSSSCT
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHC-C-----CcEEEEecCCcchH
Confidence            3479999996 99999999999999 8     99999999876543

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=90.55  E-value=0.2  Score=48.46  Aligned_cols=35  Identities=17%  Similarity=0.253  Sum_probs=30.8

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ..++|+|||+|.-|.+.|..|++. |     ++|+++.++.
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~-g-----~~v~v~E~~~   49 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSR-G-----TDAVLLESSA   49 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTT-T-----CCEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-C-----CCEEEEEcCC
Confidence            346899999999999999999999 8     8999998875

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=90.55  E-value=0.28  Score=43.60  Aligned_cols=35  Identities=17%  Similarity=0.255  Sum_probs=31.2

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .++|.|.|+ |.+|.+++..|++. |     ++|.+.+|+++
T Consensus        19 ~k~vlVTGas~gIG~~~a~~l~~~-G-----~~V~~~~r~~~   54 (249)
T 1o5i_A           19 DKGVLVLAASRGIGRAVADVLSQE-G-----AEVTICARNEE   54 (249)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHT-T-----CEEEEEESCHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEcCCHH
Confidence            368899996 89999999999999 8     89999999864

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=90.54  E-value=0.54  Score=43.95  Aligned_cols=37  Identities=16%  Similarity=0.250  Sum_probs=31.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+|.|+|+|.+|.+.++.+... |     .+|+..++++++.+
T Consensus       178 ~~VlV~GaG~vG~~a~qla~~~-G-----a~Vi~~~~~~~~~~  214 (348)
T 3two_A          178 TKVGVAGFGGLGSMAVKYAVAM-G-----AEVSVFARNEHKKQ  214 (348)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT-T-----CEEEEECSSSTTHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHH
Confidence            5999999999999988887766 7     88999998887654

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3

Probab=90.52  E-value=2.1  Score=38.44  Aligned_cols=62  Identities=13%  Similarity=0.132  Sum_probs=36.8

Q ss_pred             CCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH
Q 019978          160 DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE  239 (333)
Q Consensus       160 ~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e  239 (333)
                      ++|++|=.+-+..+.+.++....   .   +..+|..|.|+..+.         .+.+++.. .   .+.++..||+..-
T Consensus        53 ~~DVvIDFT~P~a~~~~~~~~~~---~---g~~~ViGTTG~~~~~---------~~~l~~~a-~---~~~vv~apNfSlG  113 (228)
T 1vm6_A           53 SPDVVIDFSSPEALPKTVDLCKK---Y---RAGLVLGTTALKEEH---------LQMLRELS-K---EVPVVQAYNFSIG  113 (228)
T ss_dssp             CCSEEEECSCGGGHHHHHHHHHH---H---TCEEEECCCSCCHHH---------HHHHHHHT-T---TSEEEECSCCCHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHH---c---CCCEEEeCCCCCHHH---------HHHHHHHH-h---hCCEEEeccccHH
Confidence            68999955544555555544433   2   567777787888652         12344432 1   1567888999764


Q ss_pred             H
Q 019978          240 I  240 (333)
Q Consensus       240 v  240 (333)
                      +
T Consensus       114 v  114 (228)
T 1vm6_A          114 I  114 (228)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=90.49  E-value=0.21  Score=45.97  Aligned_cols=34  Identities=9%  Similarity=0.139  Sum_probs=30.3

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      ..++|+|||+|.-|.+.|..|++. |     ++|++++++
T Consensus        13 ~~~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~   46 (335)
T 2a87_A           13 PVRDVIVIGSGPAGYTAALYAARA-Q-----LAPLVFEGT   46 (335)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHT-T-----CCCEEECCS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC-C-----CeEEEEecC
Confidence            346899999999999999999998 8     899999853

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=90.43  E-value=0.28  Score=44.60  Aligned_cols=32  Identities=31%  Similarity=0.377  Sum_probs=29.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      .+|+|||+|.-|.+.|..|++. |     ++|+++++.
T Consensus        17 ~dvvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~   48 (319)
T 3cty_A           17 FDVVIVGAGAAGFSAAVYAARS-G-----FSVAILDKA   48 (319)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESS
T ss_pred             CcEEEECcCHHHHHHHHHHHhC-C-----CcEEEEeCC
Confidence            5899999999999999999998 8     899999984

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=90.41  E-value=0.29  Score=45.88  Aligned_cols=35  Identities=23%  Similarity=0.184  Sum_probs=31.8

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      ++|.|.|+ |.+|+.++..|++. |     ++|++++|+++.
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~-g-----~~V~~~~r~~~~   64 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGK-G-----YEVHGLIRRSSN   64 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCCSS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHC-C-----CEEEEEecCCcc
Confidence            58999997 99999999999999 8     999999998754

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=90.39  E-value=0.34  Score=44.43  Aligned_cols=39  Identities=10%  Similarity=0.096  Sum_probs=33.7

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      .++|.|.|+ |.+|.++|..|++. |     ++|.+.+|+++.+++
T Consensus        31 gk~vlVTGas~gIG~~la~~l~~~-G-----~~V~~~~r~~~~~~~   70 (301)
T 3tjr_A           31 GRAAVVTGGASGIGLATATEFARR-G-----ARLVLSDVDQPALEQ   70 (301)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            367999997 88999999999999 8     899999999876543

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=90.38  E-value=0.29  Score=44.83  Aligned_cols=34  Identities=15%  Similarity=0.301  Sum_probs=30.1

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ||+|.|.|+ |.+|+.++..|++. |     ++|++.+|+.
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~   35 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQ-G-----IDLIVFDNLS   35 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCC
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhC-C-----CEEEEEeCCC
Confidence            479999995 99999999999999 8     9999999853

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=90.37  E-value=0.25  Score=48.35  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=30.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHH---hcCCCCCCee---EEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVL---IRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~---~~G~~~~~~~---V~l~~r~~~   83 (333)
                      ++|+|||+|.-|.+.|..|++   . |     ++   |+++++.+.
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~-G-----~~~~~V~v~E~~~~   42 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEK-G-----AEIPELVCFEKQAD   42 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHT-T-----CCCCEEEEECSSSS
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhc-C-----CCCCcEEEEEcCCC
Confidence            589999999999999999999   8 7     88   999998753

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=90.30  E-value=0.31  Score=48.96  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=31.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ...|.|||+|..|.+.|..+++. |     ++|+++.+.+.
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~-G-----~~V~vlEk~~~  160 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDS-G-----AKVILIEKEPV  160 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence            46899999999999999999999 8     89999988763

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=90.28  E-value=0.25  Score=45.10  Aligned_cols=37  Identities=22%  Similarity=0.191  Sum_probs=32.9

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      .|+|.|.|+ |.+|+.++..|++. |     ++|++.+|+.+..
T Consensus        11 ~~~vlVTGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~~   48 (342)
T 1y1p_A           11 GSLVLVTGANGFVASHVVEQLLEH-G-----YKVRGTARSASKL   48 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSHHHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHC-C-----CEEEEEeCCcccH
Confidence            379999997 99999999999999 8     9999999987543

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=90.27  E-value=0.26  Score=45.37  Aligned_cols=52  Identities=21%  Similarity=0.166  Sum_probs=32.7

Q ss_pred             cccchHHhhhHHHHhhccCCCCCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           21 TNGSLEERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      |+|-...+|+.  ||.|      +.+.|-|+ +-+|.++|..|++. |     .+|.+.+|+++.++
T Consensus        15 ~~n~~~~~Ms~--rL~g------KvalVTGas~GIG~aiA~~la~~-G-----a~V~i~~r~~~~l~   67 (273)
T 4fgs_A           15 TENLYFQSMTQ--RLNA------KIAVITGATSGIGLAAAKRFVAE-G-----ARVFITGRRKDVLD   67 (273)
T ss_dssp             ----------C--TTTT------CEEEEESCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred             ccccchhhhcc--hhCC------CEEEEeCcCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence            45555555542  4555      34455575 77999999999999 8     89999999987654

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=90.27  E-value=0.39  Score=44.07  Aligned_cols=38  Identities=13%  Similarity=0.256  Sum_probs=32.9

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      ++|.|.|+ |.+|.++|..|++. |     ++|.+.+|+++.+++
T Consensus        42 k~vlVTGas~GIG~aia~~la~~-G-----~~V~~~~r~~~~~~~   80 (293)
T 3rih_A           42 RSVLVTGGTKGIGRGIATVFARA-G-----ANVAVAARSPRELSS   80 (293)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHT-T-----CEEEEEESSGGGGHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            57888886 89999999999999 8     899999999876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	333
d1n1ea1	160	a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydro	3e-06
d1n1ea2	189	c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogen	1e-05
d1txga1	155	a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydro	2e-05
d2b0ja2	242	c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt	2e-04

>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 160

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Glycerol-3-phosphate dehydrogenase
domain: Glycerol-3-phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

 Score = 44.6 bits (105), Expect = 3e-06
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 276 DLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM 322
           D V  EV   +KNV AIG+G+   L      +++        E+  +
Sbjct: 2   DTVGCEVASAVKNVLAIGSGVANGL-GMGLNARAALIMRGLLEIRDL 47

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 30/229 (13%), Positives = 70/229 (30%), Gaps = 61/229 (26%)

Query: 45  RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVL 104
           + V  G+GA+G+    +L         +V   +W                      E+ +
Sbjct: 9   KAVVFGSGAFGTALAMVLSKK----CREV--CVWHM-------------------NEEEV 43

Query: 105 RRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIV 164
           R +  +   + +++                    N+  T         ++++A   A+I+
Sbjct: 44  RLVNEKRENVLFLK--------------GVQLASNITFTS--------DVEKAYNGAEII 81

Query: 165 INGLPSTETKEVFEEISRYWKERITVP--VIISLAKGVEAELEAVPRIITPTQMINRATG 222
           +  +P+   +  FE+               ++   KG+E                     
Sbjct: 82  LFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERS-------TLKFPAEIIGEF 134

Query: 223 VPIENILYLGGPNIASEIYNKEYANARICG-----AEKWRKPLAKFLRR 266
           +P   +  L GP+ A E+    +    I       A + ++ ++   R 
Sbjct: 135 LPSPLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRS 183

>d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 155

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Glycerol-3-phosphate dehydrogenase
domain: Glycerol-3-phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 276 DLVTHEVMGGLKNVYAIGAGMVAAL----TNESATSKSVYFAHCTSEMVVM 322
           D++  E+   LKNVY+I    +         E + +K V      +EM  +
Sbjct: 1   DIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAEL 51

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 1/107 (0%)

Query: 101 EDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD 160
           ++V+   +         + R   +    +       C++++      LKV ++ +EAV  
Sbjct: 82  KEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEG 141

Query: 161 ADIVINGLPSTE-TKEVFEEISRYWKERITVPVIISLAKGVEAELEA 206
           ADIVI  LP      ++ ++ +    E   V    ++     A++  
Sbjct: 142 ADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFK 188

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	333
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	99.97
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	99.95
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.73
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.69
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.67
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	99.65
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.57
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.48
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	99.47
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.38
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.36
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	99.35
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.35
d1n1ea1	160	Glycerol-3-phosphate dehydrogenase {Trypanosome (L	99.34
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	99.29
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.25
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.21
d1txga1	155	Glycerol-3-phosphate dehydrogenase {Archaeoglobus	99.2
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.2
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	99.17
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.14
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.13
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.72
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	98.67
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.54
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.52
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.49
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	98.48
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	98.42
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	98.38
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	98.37
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.33
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	98.31
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.23
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	98.23
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	98.23
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.2
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.2
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.11
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	98.08
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	98.05
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	98.04
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	98.01
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.98
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	97.96
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	97.9
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.87
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.86
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.84
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.84
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.82
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.74
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.71
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	97.69
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	97.61
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	97.6
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	97.59
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	97.57
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	97.56
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	97.55
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	97.54
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	97.54
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	97.5
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.48
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	97.48
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	97.43
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	97.42
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	97.42
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.41
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	97.39
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	97.3
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	97.24
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.21
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	97.16
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.05
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.91
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	96.89
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.87
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.81
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	96.8
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.8
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.8
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.74
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	96.73
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.7
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	96.61
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.57
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.57
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.56
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	96.55
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	96.48
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	96.47
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	96.45
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.43
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.41
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.4
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.37
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.36
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	96.36
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.33
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.28
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.26
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.13
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.03
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	96.01
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	96.0
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.99
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.98
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.97
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.95
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.94
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	95.91
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	95.91
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.9
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.87
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	95.77
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.75
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.69
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.63
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.59
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	95.59
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.58
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.54
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.54
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.54
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.48
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	95.44
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	95.42
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.39
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	95.32
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.16
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.06
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	95.04
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.02
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.86
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	94.86
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	94.79
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.78
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	94.76
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	94.74
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.72
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.68
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	94.65
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.59
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.51
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.46
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.39
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	94.37
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.35
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	94.22
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	93.88
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.86
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	93.71
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	93.69
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.66
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	93.6
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.6
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	93.3
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	93.23
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	93.21
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.2
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	93.19
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	92.94
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	92.9
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.88
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.87
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	92.71
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	92.68
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	92.61
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	92.54
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	92.36
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.18
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	92.11
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	92.1
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.1
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	92.06
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	91.98
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.82
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	91.75
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	91.67
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.66
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	91.61
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	91.6
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	91.57
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	91.57
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	91.2
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	91.17
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	91.08
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	91.05
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	90.96
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	90.85
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	90.83
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	90.78
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	90.69
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	90.68
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	90.6
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	90.34
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	90.34
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	90.23
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	90.15
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	89.96
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.62
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	89.42
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	89.27
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	89.25
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	89.14
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	89.01
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	89.0
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	88.83
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	88.57
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	88.45
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.41
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	88.4
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	88.3
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	88.28
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	88.25
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	88.23
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	88.19
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	88.17
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	88.1
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	88.06
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	87.89
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	87.77
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	87.72
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	87.65
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	87.61
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	87.61
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	87.6
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	87.6
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	87.5
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	87.41
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	87.4
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	87.32
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	87.28
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	87.27
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	87.2
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	87.17
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	87.11
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	87.09
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	86.9
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	86.72
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	86.64
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	86.64
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	86.58
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	86.54
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	86.48
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	86.36
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	86.25
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	86.11
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	86.08
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	86.06
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	86.01
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	85.72
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	85.7
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	85.68
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	85.66
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	85.58
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	85.56
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	85.55
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	85.47
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	85.4
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	85.29
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	85.18
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	85.07
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	85.04
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	85.0
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	84.64
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	84.41
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	84.35
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	84.14
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	84.1
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	83.91
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	83.87
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	83.74
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	83.62
d1ks9a1	124	Ketopantoate reductase PanE {Escherichia coli [Tax	83.61
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	83.58
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	83.51
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	83.5
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	83.47
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.36
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	83.25
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	83.24
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	82.78
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	82.57
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	82.38
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	82.31
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	82.05
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	82.05
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	81.99
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	81.93
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	81.73
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	81.41
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	81.37
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	80.61
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	80.38
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	80.26
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	80.19
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	80.19
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	80.12

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=99.97  E-value=5e-31  Score=232.81  Aligned_cols=176  Identities=18%  Similarity=0.325  Sum_probs=148.9

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .|+||+|||+|+||+++|..|+++ |     |+|++|+|+++.++.|+..+                +|++|++++    
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~~-g-----~~V~l~~r~~~~~~~i~~~~----------------~n~~yl~~~----   59 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSKK-C-----REVCVWHMNEEEVRLVNEKR----------------ENVLFLKGV----   59 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTT-E-----EEEEEECSCHHHHHHHHHHT----------------BCTTTSTTC----
T ss_pred             eeceEEEECCCHHHHHHHHHHHHc-C-----CeEEEEEecHHHHHHHhhcc----------------ccccccccc----
Confidence            356899999999999999999999 8     99999999998776544322                477888764    


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhh-----hccCCCCEEEEe
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYW-----KERITVPVIISL  196 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l-----~~~~~~~~Ivs~  196 (333)
                         .+|                  .++.+++|++++++++|+||+|||++.++++++++.+++     ++   +..++++
T Consensus        60 ---~l~------------------~~i~~t~~l~~a~~~ad~iiiavPs~~~~~~~~~~~~~~~~~~~~~---~~~ii~~  115 (189)
T d1n1ea2          60 ---QLA------------------SNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEK---QVPVLVC  115 (189)
T ss_dssp             ---BCC------------------TTEEEESCHHHHHTTCSCEEECSCHHHHHHHHHHHCHHHHHHHHHH---TCCEEEC
T ss_pred             ---ccc------------------cccccchhhhhccCCCCEEEEcCcHHHHHHHHHHHHhhhhhhhccC---CcEEEEE
Confidence               343                  279999999999999999999999999999999998753     34   6789999


Q ss_pred             eecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCC--CeEEEe
Q 019978          197 AKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRP--HFTVWD  273 (333)
Q Consensus       197 ~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~--~~~v~~  273 (333)
                      +||++.+     +..++++++.+.++.  ..+++++||+||.|++++.|+.+++ +.+.+.++.++++|++.  .|++|.
T Consensus       116 tKGie~~-----t~~~~seii~e~~~~--~~~~vlsGP~~A~Ev~~~~pt~~viAs~~~~~a~~i~~lfst~~~~frvy~  188 (189)
T d1n1ea2         116 TKGIERS-----TLKFPAEIIGEFLPS--PLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRSFVCWA  188 (189)
T ss_dssp             CCSCCTT-----TCCCHHHHHTTTSCG--GGEEEEESSCCHHHHHTTCCEEEEEECSSHHHHHHHHHHHSCTTSSEEEEE
T ss_pred             ECCCccC-----CccchhhHHHHHhcc--cceEEEecCCcHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCCCCEEEec
Confidence            9999876     578999999998863  5688999999999999999988766 55778999999999864  599986


Q ss_pred             c
Q 019978          274 N  274 (333)
Q Consensus       274 s  274 (333)
                      +
T Consensus       189 S  189 (189)
T d1n1ea2         189 T  189 (189)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.95  E-value=3.7e-28  Score=212.17  Aligned_cols=177  Identities=20%  Similarity=0.253  Sum_probs=139.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc--chhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR--SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~--~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      |||+|||+|+||+++|..|+++ |     |+|++|+|+.+  .++.         ++..+       +|+.+...     
T Consensus         1 MkI~ViGaG~~GtalA~~la~~-g-----~~V~l~~r~~~~~~~~~---------i~~~~-------~~~~~~~~-----   53 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDN-G-----NEVRIWGTEFDTEILKS---------ISAGR-------EHPRLGVK-----   53 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHH-C-----CEEEEECCGGGHHHHHH---------HHTTC-------CBTTTTBC-----
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEEecccHHHHHH---------Hhhhh-------hhhhhcch-----
Confidence            8999999999999999999999 8     99999999644  2222         22221       23322211     


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                          ++                 ...+..++|++++++++|+||+|||++.++++++++.+++++    ..+++++||+.
T Consensus        54 ----~~-----------------~~~i~~~~~~~~~~~~ad~Ii~avps~~~~~~~~~l~~~l~~----~~ii~~tkg~~  108 (180)
T d1txga2          54 ----LN-----------------GVEIFWPEQLEKCLENAEVVLLGVSTDGVLPVMSRILPYLKD----QYIVLISKGLI  108 (180)
T ss_dssp             ----CC-----------------SEEEECGGGHHHHHTTCSEEEECSCGGGHHHHHHHHTTTCCS----CEEEECCCSEE
T ss_pred             ----hc-----------------cccccccccHHHHHhccchhhcccchhhhHHHHHhhcccccc----ceecccccCcc
Confidence                10                 024677899999999999999999999999999999999864    57888999986


Q ss_pred             ccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEecC
Q 019978          202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNG  275 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s~  275 (333)
                      ...   ....++++++.+..+.....+++++||+||.|++++.|+.+++ +.+.+.++.++++|++.+|++|.++
T Consensus       109 ~~~---~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~~~~pt~~vias~~~~~a~~i~~~f~~~~frvy~St  180 (180)
T d1txga2         109 DFD---NSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVEVTT  180 (180)
T ss_dssp             EET---TEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEES
T ss_pred             ccc---cccccchHHHHhhhcccccceeEEcCCccHHHHHcCCCcEEEEEcCCHHHHHHHHHHHCCCCEEEEeCC
Confidence            542   1335688888887764445688999999999999999987766 5567889999999999999999864

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.73  E-value=4e-18  Score=144.03  Aligned_cols=150  Identities=17%  Similarity=0.136  Sum_probs=112.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|.||++|+..|.++ |     ++|++|+|++++.+++.+        +              +         
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~-~-----~~i~v~~r~~~~~~~l~~--------~--------------~---------   43 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQT-P-----HELIISGSSLERSKEIAE--------Q--------------L---------   43 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTS-S-----CEEEEECSSHHHHHHHHH--------H--------------H---------
T ss_pred             CEEEEEeccHHHHHHHHHHHhC-C-----CeEEEEcChHHhHHhhcc--------c--------------c---------
Confidence            8999999999999999999988 7     999999999876543211        0              0         


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                                             ++.++.+.+++++++|+||+|||++.++++++.+    ++   ++.|+|++.|+..+
T Consensus        44 -----------------------g~~~~~~~~~~~~~~dvIilavkp~~~~~vl~~l----~~---~~~iis~~agi~~~   93 (152)
T d2ahra2          44 -----------------------ALPYAMSHQDLIDQVDLVILGIKPQLFETVLKPL----HF---KQPIISMAAGISLQ   93 (152)
T ss_dssp             -----------------------TCCBCSSHHHHHHTCSEEEECSCGGGHHHHHTTS----CC---CSCEEECCTTCCHH
T ss_pred             -----------------------ceeeechhhhhhhccceeeeecchHhHHHHhhhc----cc---ceeEecccccccHH
Confidence                                   2334567888899999999999999998887654    44   67899999998864


Q ss_pred             ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEec
Q 019978          204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDN  274 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~s  274 (333)
                                  .+++.++.. . ..++.+||.+..+..+....... ..+++..+.++++|+..|-.+++.
T Consensus        94 ------------~l~~~l~~~-~-~ivr~mPN~~~~v~~g~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~  151 (152)
T d2ahra2          94 ------------RLATFVGQD-L-PLLRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFGSTFDIS  151 (152)
T ss_dssp             ------------HHHHHHCTT-S-CEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTEEEEECC
T ss_pred             ------------HHHhhhccc-c-cchhhccchhhhcCccceEEEeCCCCCHHHHHHHHHHHHhCCCEEEec
Confidence                        367777632 2 24778899998776653332211 124678999999999988766554

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.69  E-value=2.2e-17  Score=139.00  Aligned_cols=150  Identities=18%  Similarity=0.224  Sum_probs=111.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|+||++|+..|.++ |    +++|.+|+|++++++++.++                     +          
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~-~----~~~i~v~~r~~~~~~~l~~~---------------------~----------   44 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQ-G----GYRIYIANRGAEKRERLEKE---------------------L----------   44 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-C----SCEEEEECSSHHHHHHHHHH---------------------T----------
T ss_pred             CEEEEEcCcHHHHHHHHHHHHC-C----CCcEEEEeCChhHHHHhhhh---------------------c----------
Confidence            8999999999999999999888 6    28999999998766542210                     0          


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                                             .+.+.++.++ +.++|+||+|||++.++++++++.+   .   ++.+||+..|+..+
T Consensus        45 -----------------------~~~~~~~~~~-v~~~Div~lavkP~~~~~v~~~l~~---~---~~~viS~~ag~~~~   94 (152)
T d1yqga2          45 -----------------------GVETSATLPE-LHSDDVLILAVKPQDMEAACKNIRT---N---GALVLSVAAGLSVG   94 (152)
T ss_dssp             -----------------------CCEEESSCCC-CCTTSEEEECSCHHHHHHHHTTCCC---T---TCEEEECCTTCCHH
T ss_pred             -----------------------cccccccccc-ccccceEEEecCHHHHHHhHHHHhh---c---ccEEeecccCCCHH
Confidence                                   2445555544 6789999999999999999888753   2   57899999998864


Q ss_pred             ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEE-eCChhhHHHHHHHhCCCCeEEEe
Q 019978          204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWD  273 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~  273 (333)
                                  .+++.++..  ...++.+|+.+..+..+.+..... ..+++..+.++++|+..|..+++
T Consensus        95 ------------~l~~~l~~~--~~iir~mpn~p~~~~~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v  151 (152)
T d1yqga2          95 ------------TLSRYLGGT--RRIVRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTVWL  151 (152)
T ss_dssp             ------------HHHHHTTSC--CCEEEEECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEEEEC
T ss_pred             ------------HHHHHhCcC--cceEeecccchhHhcCCcEEEEeCCCCCHHHHHHHHHHHHhCCCEEEe
Confidence                        477878632  235788999999887764433211 12466788999999998866653

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.67  E-value=2.7e-16  Score=133.37  Aligned_cols=156  Identities=13%  Similarity=0.102  Sum_probs=104.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|.||++||..|.++ |     ++|+.|+|+++.++++.+.+                     .         
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~-g-----~~V~~~d~~~~~~~~a~~~~---------------------~---------   44 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRR-G-----HYLIGVSRQQSTCEKAVERQ---------------------L---------   44 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHTT---------------------S---------
T ss_pred             CEEEEEeecHHHHHHHHHHHHC-C-----CEEEEEECCchHHHHHHHhh---------------------c---------
Confidence            8999999999999999999999 8     99999999987654321100                     0         


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                                             --...++. ++++++|+||+|+|...++++++++.+++++   +++|++++ +....
T Consensus        45 -----------------------~~~~~~~~-~~~~~~DiIilavp~~~~~~vl~~l~~~l~~---~~iv~~~~-s~~~~   96 (165)
T d2f1ka2          45 -----------------------VDEAGQDL-SLLQTAKIIFLCTPIQLILPTLEKLIPHLSP---TAIVTDVA-SVKTA   96 (165)
T ss_dssp             -----------------------CSEEESCG-GGGTTCSEEEECSCHHHHHHHHHHHGGGSCT---TCEEEECC-SCCHH
T ss_pred             -----------------------cceeeeec-ccccccccccccCcHhhhhhhhhhhhhhccc---ccceeecc-ccchH
Confidence                                   01233444 5688999999999999999999999999887   67776654 22221


Q ss_pred             ccCCccCCCHHHHHHhHhCCCCCcEEEEc-----CCCchH-HHhccCceeEEE--eCChhhHHHHHHHhCCCCeEEEe
Q 019978          204 LEAVPRIITPTQMINRATGVPIENILYLG-----GPNIAS-EIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWD  273 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~-----GP~~a~-ev~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~v~~  273 (333)
                               ....+.+... .......+.     ||..+. +...+.+..++.  ..+++..+.++++|+..|++++.
T Consensus        97 ---------~~~~~~~~~~-~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~v~~l~~~lG~~v~~  164 (165)
T d2f1ka2          97 ---------IAEPASQLWS-GFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYL  164 (165)
T ss_dssp             ---------HHHHHHHHST-TCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTCEEEE
T ss_pred             ---------HHHHHHHhhc-ccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCEEEe
Confidence                     1122333222 111122333     344433 233444444333  34667899999999999999875

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=2.7e-17  Score=138.45  Aligned_cols=161  Identities=13%  Similarity=0.088  Sum_probs=104.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|+||+++|..|++. |     |+|++|+|++++.+.++..                     ....       
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~-G-----~~V~~~~r~~~~~~~~~~~---------------------~~~~-------   46 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQ-G-----HEVQGWLRVPQPYCSVNLV---------------------ETDG-------   46 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCSEEEEEEE---------------------CTTS-------
T ss_pred             CEEEEECcCHHHHHHHHHHHHC-C-----CceEEEEcCHHHhhhhccc---------------------cCCc-------
Confidence            8999999999999999999999 8     9999999999765432110                     0000       


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                      ..                    .......+..+.+.++|+||++||+++++++++.+.+++.+   ++.|++++||+...
T Consensus        47 ~~--------------------~~~~~~~~~~~~~~~~D~iii~vka~~~~~~~~~l~~~~~~---~~~Iv~~qNG~~~~  103 (167)
T d1ks9a2          47 SI--------------------FNESLTANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPV---TTPILLIHNGMGTI  103 (167)
T ss_dssp             CE--------------------EEEEEEESCHHHHHTCSEEEECSCGGGHHHHHHHHHTTSCT---TSCEEEECSSSCTT
T ss_pred             cc--------------------cccccccchhhhhcccceEEEeecccchHHHHHhhccccCc---ccEEeeccCcccHH
Confidence            00                    01222334445678999999999999999999999999887   78999999999875


Q ss_pred             ccCCccCCCHHHHHHhHhCCC----CCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEe
Q 019978          204 LEAVPRIITPTQMINRATGVP----IENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD  273 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~----~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~  273 (333)
                      .           .+++ ...+    .....+...|........+.+.........+..+.+.++|+....++..
T Consensus       104 ~-----------~l~~-~~~~v~~g~~~~~~~~~~~~i~~~~~g~t~ig~~~~~~~~~~~l~~~l~~a~~~~~W  165 (167)
T d1ks9a2         104 E-----------ELQN-IQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLADILQTVLPDVAW  165 (167)
T ss_dssp             G-----------GGTT-CCSCEEEEEECCEEEEETTEEEEEECCCEEEEESSGGGTTCTHHHHHHHTTSSCEEE
T ss_pred             H-----------HHhh-cCCcEEEEEeeEeEEecCCEEEEeCCcCEEEeeCCCcchhHHHHHHHHHhhCCCCcc
Confidence            2           1222 1111    0011233344444444444222111122335567888888877655543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.57  E-value=5e-15  Score=126.15  Aligned_cols=109  Identities=21%  Similarity=0.260  Sum_probs=83.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      +||+|||+|+||+++|..|+++ |     |+|++|+|++++++.++..+                .+..+.+..      
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~-G-----~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~------   53 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALK-G-----QSVLAWDIDAQRIKEIQDRG----------------AIIAEGPGL------   53 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHHT----------------SEEEESSSC------
T ss_pred             CEEEEECccHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHHcC----------------CCchhhhhh------
Confidence            7999999999999999999999 8     99999999988766543211                122222211      


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                       ...                 ......++|++++++++|+||+++|++.++++++++++++++   +++|+ +++|...
T Consensus        54 -~~~-----------------~~~~~~~~~~~e~~~~aD~iii~v~~~~~~~~~~~i~~~l~~---~~~iv-~~~g~~~  110 (184)
T d1bg6a2          54 -AGT-----------------AHPDLLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISE---GQLII-LNPGATG  110 (184)
T ss_dssp             -CEE-----------------ECCSEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCT---TCEEE-ESSCCSS
T ss_pred             -hhh-----------------hhhhhhhhhhHhHhcCCCEEEEEEchhHHHHHHHHhhhccCC---CCEEE-EeCCCCc
Confidence             000                 024567889999999999999999999999999999999987   66554 6666554

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.48  E-value=1.3e-13  Score=116.63  Aligned_cols=152  Identities=16%  Similarity=0.194  Sum_probs=101.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|.||..+|..|+++ |     ++|++|+|+++.++++..                                 
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~-G-----~~V~~~d~~~~~~~~~~~---------------------------------   41 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKA-G-----YSLVVSDRNPEAIADVIA---------------------------------   41 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHH---------------------------------
T ss_pred             CEEEEEehhHHHHHHHHHHHHC-C-----CeEEEEeCCcchhHHHHH---------------------------------
Confidence            8999999999999999999999 8     999999999876543210                                 


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-hhHHHHH---HHHHhhhhccCCCCEEEEeeec
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps-~~~~~vl---~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                            .......+++++++++|+||+|||. ..+++++   +.+.+.+++   ++++|.++..
T Consensus        42 ----------------------~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~---g~iiid~sT~   96 (161)
T d1vpda2          42 ----------------------AGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKP---GTVLIDMSSI   96 (161)
T ss_dssp             ----------------------TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCT---TCEEEECSCC
T ss_pred             ----------------------hhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcchhhccCC---CCEEEECCCC
Confidence                                  0234557788899999999999985 5788877   446666666   7788876643


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH--HhccCceeEEEeCChhhHHHHHHHhCCCCeEEE
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRPHFTVW  272 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e--v~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~  272 (333)
                       .+++         +..+.+.+..  ..+.++..|-....  ...+..+ .+++++++..++++.+|+..+-+++
T Consensus        97 -~p~~---------~~~~~~~~~~--~g~~~vdapv~gg~~~a~~g~l~-~~~gG~~~~~~~~~~il~~~~~~i~  158 (161)
T d1vpda2          97 -APLA---------SREISDALKA--KGVEMLDAPVSGGEPKAIDGTLS-VMVGGDKAIFDKYYDLMKAMAGSVV  158 (161)
T ss_dssp             -CHHH---------HHHHHHHHHT--TTCEEEECCEESHHHHHHHTCEE-EEEESCHHHHHHHHHHHHTTEEEEE
T ss_pred             -CHHH---------HHHHHHHHHH--cCCceecccccCChhHHhcCCeE-EEEcCCHHHHHHHHHHHHHhcCceE
Confidence             2221         1223333321  11334444443221  1233223 4567788889999999988766554

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.38  E-value=5e-13  Score=113.08  Aligned_cols=155  Identities=15%  Similarity=0.194  Sum_probs=99.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      |+||+|||.|.||++||..|.++ |     ++|.+|+|+++..+.+..                                
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~-g-----~~v~~~d~~~~~~~~~~~--------------------------------   42 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKA-G-----YLLNVFDLVQSAVDGLVA--------------------------------   42 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSSHHHHHHHHH--------------------------------
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHC-C-----CeEEEEECchhhhhhhhh--------------------------------
Confidence            57999999999999999999999 8     999999999865432110                                


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHH---HHhhhhccCCCCEEEEeee
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE---ISRYWKERITVPVIISLAK  198 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~~---i~~~l~~~~~~~~Ivs~~k  198 (333)
                                             .......++.+++..+|+|++++|.. ..++++..   +.+.+.+   +++||.++.
T Consensus        43 -----------------------~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~~~~l~~---g~iiid~st   96 (162)
T d3cuma2          43 -----------------------AGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAP---GTLVLECST   96 (162)
T ss_dssp             -----------------------TTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCHHHHSCT---TCEEEECSC
T ss_pred             -----------------------hhccccchhhhhccccCeeeecccchhhHHHHHhccccccccCCC---CCEEEECCC
Confidence                                   02334467788899999999999976 56666654   4455555   677877664


Q ss_pred             cCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEE
Q 019978          199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW  272 (333)
Q Consensus       199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~  272 (333)
                      .-+..      .....+.+.+ .+.......+..||..|.   .|.. ..+++++++..++++.+|+.-+.+++
T Consensus        97 ~~p~~------~~~~~~~~~~-~gi~~~dapv~Gg~~~a~---~G~l-~~~~gG~~~~~~~~~~il~~~~~~v~  159 (162)
T d3cuma2          97 IAPTS------ARKIHAAARE-RGLAMLDAPVSGGTAGAA---AGTL-TFMVGGDAEALEKARPLFEAMGRNIF  159 (162)
T ss_dssp             CCHHH------HHHHHHHHHH-TTCEEEECCEESCHHHHH---HTCE-EEEEESCHHHHHHHHHHHHHHEEEEE
T ss_pred             CCHHH------HHHHHHHHHH-CCCcEEecccccCccccc---cCCe-EEEecCCHHHHHHHHHHHHHHcCccE
Confidence            43221      1112222222 122111122445554443   3432 34567788888999999987665554

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.36  E-value=1.9e-12  Score=109.37  Aligned_cols=161  Identities=16%  Similarity=0.108  Sum_probs=98.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      |+||+|||+|.||++||..|.++ |+   ..+|+.||++++..+.+.+        .             ..        
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~-g~---~~~I~~~D~~~~~~~~a~~--------~-------------~~--------   47 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRS-GF---KGKIYGYDINPESISKAVD--------L-------------GI--------   47 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHT-TC---CSEEEEECSCHHHHHHHHH--------T-------------TS--------
T ss_pred             CCEEEEEccCHHHHHHHHHHHhc-CC---CeEEEEEECChHHHHHHHH--------h-------------hc--------
Confidence            45799999999999999999988 71   1367778888765442111        0             00        


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHH-HhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE-AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~e-a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                              -....++..+ ...++|+||+|+|.+.+.++++++.+++++   +++++.++..-.
T Consensus        48 ------------------------~~~~~~~~~~~~~~~~dlIila~p~~~~~~vl~~l~~~~~~---~~ii~d~~s~k~  100 (171)
T d2g5ca2          48 ------------------------IDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSE---DATVTDQGSVKG  100 (171)
T ss_dssp             ------------------------CSEEESCGGGGGGTCCSEEEECSCHHHHHHHHHHHHHHSCT---TCEEEECCSCCT
T ss_pred             ------------------------chhhhhhhhhhhccccccccccCCchhhhhhhhhhhccccc---cccccccccccH
Confidence                                    0112233322 345799999999999999999999999887   777776653222


Q ss_pred             ccccCCccCCCHHHHHHhHhCCC---CCcEE--EEcCCCchH-HHhccCceeEEE--eCChhhHHHHHHHhCCCCeEEEe
Q 019978          202 AELEAVPRIITPTQMINRATGVP---IENIL--YLGGPNIAS-EIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWD  273 (333)
Q Consensus       202 ~~~~~~~~~~~~se~i~~~lg~~---~~~~~--vl~GP~~a~-ev~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~v~~  273 (333)
                      .          ..+.+.+.++..   .+|++  ..+||..+. ++..+.+...+.  ..+++..+.++++|+..|-++..
T Consensus       101 ~----------~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~~~~~~~v~~~~~~lG~~v~~  170 (171)
T d2g5ca2         101 K----------LVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEY  170 (171)
T ss_dssp             H----------HHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             H----------HHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence            1          123344444321   12211  112444433 233444443322  23556788999999988877653

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.35  E-value=7.7e-12  Score=109.29  Aligned_cols=179  Identities=16%  Similarity=0.095  Sum_probs=114.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|.+|.++|..||++ |     |+|+.||.++++++.++.         +.        .|.+.+..      
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~-g-----~~V~g~D~n~~~i~~ln~---------g~--------~p~~e~~~------   51 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSAR-G-----HEVIGVDVSSTKIDLINQ---------GK--------SPIVEPGL------   51 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHT---------TC--------CSSCCTTH------
T ss_pred             CEEEEECCCHhHHHHHHHHHhC-C-----CcEEEEeCCHHHHHHhcc---------cC--------Ccccchhh------
Confidence            8999999999999999999999 8     999999999987765442         21        11111111      


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------hhHHHHHHHHHhhhhccCCCCEE
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------TETKEVFEEISRYWKERITVPVI  193 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps----------~~~~~vl~~i~~~l~~~~~~~~I  193 (333)
                           .|++.+....       ..+..++|.+++++++|++++|||.          ..+..+++.+...++...++++|
T Consensus        52 -----~~~l~~~~~~-------~~~~~~~~~~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~li  119 (202)
T d1mv8a2          52 -----EALLQQGRQT-------GRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTV  119 (202)
T ss_dssp             -----HHHHHHHHHT-------TCEEEESCHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEE
T ss_pred             -----hhhhhhhhcc-------cccccCCCHHHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcce
Confidence                 1122221111       2678899999999999999999986          25677777777665431114444


Q ss_pred             EEeeecCcccccCCccCCCHHHHHHhHhCCC-CCcEEEEcCCCchHHHhc----cCceeEEE-eCChhhHHHHHHHhCCC
Q 019978          194 ISLAKGVEAELEAVPRIITPTQMINRATGVP-IENILYLGGPNIASEIYN----KEYANARI-CGAEKWRKPLAKFLRRP  267 (333)
Q Consensus       194 vs~~kGi~~~~~~~~~~~~~se~i~~~lg~~-~~~~~vl~GP~~a~ev~~----~~~~~~~~-~~~~~~~~~l~~ll~~~  267 (333)
                      | +...+.+++    +......++.+..+.. ...+.+.+.|.+..+...    ..+...++ +.+++..+.++++|+.-
T Consensus       120 i-i~STv~pGt----t~~~~~~~l~~~~~~~~~~~~~~~~~PE~~~~G~a~~d~~~~~~iViG~~~~~~~~~~~~ly~~i  194 (202)
T d1mv8a2         120 V-VRSTVLPGT----VNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYREL  194 (202)
T ss_dssp             E-ECSCCCTTH----HHHTHHHHHHHHHSCCBTTTBEEEECCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTS
T ss_pred             e-eccccCCcc----hhhhhhhhhhccccccccccccchhhhhhhcccchhhhhcCCCeEEEEeCCHHHHHHHHHHHHhc
Confidence            4 444555542    2223334455544322 234668889998765331    12333344 45667888999999875


Q ss_pred             C
Q 019978          268 H  268 (333)
Q Consensus       268 ~  268 (333)
                      .
T Consensus       195 ~  195 (202)
T d1mv8a2         195 D  195 (202)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.9e-12  Score=112.92  Aligned_cols=180  Identities=15%  Similarity=0.198  Sum_probs=112.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      .+||+|||+|.||+.+|..++.+ |     ++|++|+++++.+++... .+.+.+       ++...... ....     
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~-G-----~~V~l~D~~~~~l~~a~~-~i~~~l-------~~~~~~~~-~~~~-----   63 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAAT-G-----HTVVLVDQTEDILAKSKK-GIEESL-------RKVAKKKF-AENP-----   63 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHH-HHHHHH-------HHHHHTTS-SSCH-----
T ss_pred             eEEEEEECcCHHHHHHHHHHHhC-C-----CcEEEEECChHHHHHHHh-hHHHHH-------HHHHHhhh-hccc-----
Confidence            36999999999999999999999 8     999999999987665432 111111       11111111 1000     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                         ...+|...         ..+.++..++|+.+++.+||+|+.|+|.+  ...++++++.+++++   ++++.|.+.++
T Consensus        64 ---~~~~~~~~---------~~l~~i~~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~---~~ilasnTS~l  128 (192)
T d1f0ya2          64 ---KAGDEFVE---------KTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAE---HTIFASNTSSL  128 (192)
T ss_dssp             ---HHHHHHHH---------HHHHTEEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCT---TCEEEECCSSS
T ss_pred             ---hhhHHHHH---------HHHhhccccchhHhhhcccceehhhcccchhHHHHHHHHHhhhccc---CceeeccCccc
Confidence               00000000         00126888999999999999999999986  699999999999988   78888888877


Q ss_pred             cccccCCccCCCHHHHHHhHhCCCCCcEEEE--cCCCchHHHhccCceeEEE-e--CChhhHHHHHHHhCCCCeEEEecC
Q 019978          201 EAELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARI-C--GAEKWRKPLAKFLRRPHFTVWDNG  275 (333)
Q Consensus       201 ~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl--~GP~~a~ev~~~~~~~~~~-~--~~~~~~~~l~~ll~~~~~~v~~s~  275 (333)
                      ...           + +.+.+..+ ..+..+  .-|.+..      +-.-++ +  .+++.++.+.+++...|..+....
T Consensus       129 ~i~-----------~-la~~~~~p-~r~ig~HffnP~~~~------~lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV~v~  189 (192)
T d1f0ya2         129 QIT-----------S-IANATTRQ-DRFAGLHFFNPVPVM------KLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCK  189 (192)
T ss_dssp             CHH-----------H-HHTTSSCG-GGEEEEEECSSTTTC------CEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             ccc-----------h-hhhhccCH-hHEEeeccccccCcc------cEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEee
Confidence            764           2 44444433 222221  2232211      111122 1  245677788888877776665555


Q ss_pred             C
Q 019978          276 D  276 (333)
Q Consensus       276 D  276 (333)
                      |
T Consensus       190 D  190 (192)
T d1f0ya2         190 D  190 (192)
T ss_dssp             S
T ss_pred             c
Confidence            5

>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Glycerol-3-phosphate dehydrogenase
domain: Glycerol-3-phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=99.34  E-value=4.6e-13  Score=113.83  Aligned_cols=54  Identities=26%  Similarity=0.340  Sum_probs=51.8

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCC
Q 019978          275 GDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSW  329 (333)
Q Consensus       275 ~Di~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~  329 (333)
                      +|++|+|+||+|||||||++||++|+++ |+|+++++++++++||..+ +++|++.
T Consensus         1 tD~~GvE~~galKNi~Aia~Gi~~gl~~-g~N~~aali~~g~~Em~~~~~~~g~~~   55 (160)
T d1n1ea1           1 TDTVGCEVASAVKNVLAIGSGVANGLGM-GLNARAALIMRGLLEIRDLTAALGGDG   55 (160)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            5999999999999999999999999999 7999999999999999999 9999874

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.29  E-value=1.3e-11  Score=106.87  Aligned_cols=177  Identities=14%  Similarity=0.131  Sum_probs=110.5

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .+.+||+|||+|.||+.+|..++.+ |     ++|++|+++++.+++....     +...   +.+........+.    
T Consensus         2 ~~I~~vaViGaG~mG~~iA~~~a~~-G-----~~V~l~D~~~~~l~~~~~~-----i~~~---l~~~~~~~~~~~~----   63 (186)
T d1wdka3           2 KDVKQAAVLGAGIMGGGIAYQSASK-G-----TPILMKDINEHGIEQGLAE-----AAKL---LVGRVDKGRMTPA----   63 (186)
T ss_dssp             CCCSSEEEECCHHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHHHHH-----HHHH---HHHHHTTTSSCHH----
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHhhhhhh-----hhhh---HHhhhcccccchh----
Confidence            4578999999999999999999999 8     9999999999876543211     1110   1111111111110    


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~--~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                            .++++             +.++..+++.+ ++.++|+||.++|..  ...+++++|.+++++   ++++.|.+.
T Consensus        64 ------~~~~~-------------~~~i~~~~~~~-~~~~adlViEav~E~l~~K~~lf~~l~~~~~~---~~IiaSnTS  120 (186)
T d1wdka3          64 ------KMAEV-------------LNGIRPTLSYG-DFGNVDLVVEAVVENPKVKQAVLAEVENHVRE---DAILASNTS  120 (186)
T ss_dssp             ------HHHHH-------------HHHEEEESSST-TGGGCSEEEECCCSCHHHHHHHHHHHHTTSCT---TCEEEECCS
T ss_pred             ------hhhhh-------------hceeecccccc-cccccceeeeeecchHHHHHHHHHHHHhhcCC---CeeEEeccc
Confidence                  01111             12577777775 588999999999986  688999999999988   889988888


Q ss_pred             cCcccccCCccCCCHHHHHHhHhCCCCCcEEEE--cCCCchHHHhccCceeEEE--eCChhhHHHHHHHhCCCCeEEEec
Q 019978          199 GVEAELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDN  274 (333)
Q Consensus       199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl--~GP~~a~ev~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~v~~s  274 (333)
                      ++...            .+.+.+..+ ..+..+  .-|.+...     ...++.  ..+++..+.+..++...|..+...
T Consensus       121 ~l~i~------------~la~~~~~p-~r~~g~Hf~nP~~~~~-----lVEiv~~~~T~~~~~~~~~~~~~~lgk~pv~v  182 (186)
T d1wdka3         121 TISIS------------LLAKALKRP-ENFVGMHFFNPVHMMP-----LVEVIRGEKSSDLAVATTVAYAKKMGKNPIVV  182 (186)
T ss_dssp             SSCHH------------HHGGGCSCG-GGEEEEECCSSTTTCC-----EEEEEECSSCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             cccHH------------HHHHhccCc-hheEeeccccCcccCC-----eEEECCCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence            88764            255555433 223222  22222110     111122  224566777777777776655544


Q ss_pred             CC
Q 019978          275 GD  276 (333)
Q Consensus       275 ~D  276 (333)
                      .|
T Consensus       183 ~d  184 (186)
T d1wdka3         183 ND  184 (186)
T ss_dssp             ES
T ss_pred             ec
Confidence            44

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.25  E-value=3.8e-11  Score=99.70  Aligned_cols=144  Identities=24%  Similarity=0.268  Sum_probs=99.7

Q ss_pred             CCCceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           41 GDPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        41 ~~~~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      ..++||+||| +|.||+.||..|.++ |     |+|++|+|+++..                                  
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~-G-----~~V~~~d~~~~~~----------------------------------   46 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRAS-G-----YPISILDREDWAV----------------------------------   46 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTT-T-----CCEEEECTTCGGG----------------------------------
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHc-C-----CCcEecccccccc----------------------------------
Confidence            4678999999 899999999999999 8     9999999986421                                  


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                                        .++.+.++|++++++|...+..++.++.+++++   +++++.++ +
T Consensus        47 ----------------------------------~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~---~~iiiD~~-S   88 (152)
T d2pv7a2          47 ----------------------------------AESILANADVVIVSVPINLTLETIERLKPYLTE---NMLLADLT-S   88 (152)
T ss_dssp             ----------------------------------HHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCT---TSEEEECC-S
T ss_pred             ----------------------------------cchhhhhccccccccchhhheeeeecccccccC---CceEEEec-c
Confidence                                              112356899999999999999999999999887   77777665 2


Q ss_pred             CcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCCCeEEEe
Q 019978          200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD  273 (333)
Q Consensus       200 i~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~  273 (333)
                      +...         +.+.+.+.++.......-+.||....  ..+.....+...+.+..+++.++|+..|-+++.
T Consensus        89 vk~~---------~~~~~~~~~~~~~v~~hP~~Gp~~~~--~~g~~~v~~~g~~~~~~~~~~~ll~~~Ga~v~e  151 (152)
T d2pv7a2          89 VKRE---------PLAKMLEVHTGAVLGLHPMFGADIAS--MAKQVVVRCDGRFPERYEWLLEQIQIWGAKIYQ  151 (152)
T ss_dssp             CCHH---------HHHHHHHHCSSEEEEEEECSCTTCSC--CTTCEEEEEEEECGGGTHHHHHHHHHTTCEEEE
T ss_pred             cCHH---------HHHHHHHHccCCEEEecccCCCcccc--cCCcEEEEecCCCHHHHHHHHHHHHHhCCEEEe
Confidence            2221         22444454432111123456776542  122222223345667789999999988888764

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.21  E-value=7.6e-13  Score=110.17  Aligned_cols=146  Identities=13%  Similarity=0.033  Sum_probs=86.6

Q ss_pred             EEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcCCc
Q 019978           46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRT  125 (333)
Q Consensus        46 I~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~  125 (333)
                      |+|||+|+||++|+..|.+. +     +.+.+|+|++++++++..        .              .           
T Consensus         2 IgfIG~G~mg~~l~~~L~~~-~-----~~~~v~~R~~~~~~~l~~--------~--------------~-----------   42 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDR-Y-----EIGYILSRSIDRARNLAE--------V--------------Y-----------   42 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----------CCCEECSSHHHHHHHHH--------H--------------T-----------
T ss_pred             EEEEeCcHHHHHHHHHHHhC-C-----CEEEEEeCChhhhcchhh--------c--------------c-----------
Confidence            68999999999999999766 3     455799999887654321        0              0           


Q ss_pred             ccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccccc
Q 019978          126 LHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELE  205 (333)
Q Consensus       126 l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~  205 (333)
                                           .. ...+++++++.+|+||+|||++.+.++++++.   .+   ++++++++.+...+. 
T Consensus        43 ---------------------~~-~~~~~~~~~~~~DiVil~v~d~~i~~v~~~l~---~~---~~ivi~~s~~~~~~~-   93 (153)
T d2i76a2          43 ---------------------GG-KAATLEKHPELNGVVFVIVPDRYIKTVANHLN---LG---DAVLVHCSGFLSSEI-   93 (153)
T ss_dssp             ---------------------CC-CCCSSCCCCC---CEEECSCTTTHHHHHTTTC---CS---SCCEEECCSSSCGGG-
T ss_pred             ---------------------cc-cccchhhhhccCcEEEEeccchhhhHHHhhhc---cc---ceeeeecccchhhhh-
Confidence                                 00 01234466789999999999999999988874   23   678999987776542 


Q ss_pred             CCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccC-ceeEEEeCChhhHHHHHHHhCCCCeEEEe
Q 019978          206 AVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKE-YANARICGAEKWRKPLAKFLRRPHFTVWD  273 (333)
Q Consensus       206 ~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~-~~~~~~~~~~~~~~~l~~ll~~~~~~v~~  273 (333)
                                 ++....   .....+..|.......... ...+.+.++++..+.++++|+..|.+++.
T Consensus        94 -----------l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~~~lG~~~~~  148 (153)
T d2i76a2          94 -----------FKKSGR---ASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFV  148 (153)
T ss_dssp             -----------GCSSSE---EEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCEEE
T ss_pred             -----------hhhhcc---ccceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHHHHHCCcEEE
Confidence                       222111   1112223333222222221 22234566778888999999877755543

>d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Glycerol-3-phosphate dehydrogenase
domain: Glycerol-3-phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.20  E-value=2.8e-12  Score=108.41  Aligned_cols=55  Identities=24%  Similarity=0.413  Sum_probs=50.5

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhccCCC----CCccHHHHHHHHHHHHHHH-HHCCCCCC
Q 019978          276 DLVTHEVMGGLKNVYAIGAGMVAALTNE----SATSKSVYFAHCTSEMVVM-HGMGRSWQ  330 (333)
Q Consensus       276 Di~gve~~~alkNv~Ai~~Gi~~gl~~~----~~n~~~~l~~~~~~E~~~l-~~~G~~~~  330 (333)
                      |++|+|+||+|||||||++||++|++++    ++|+++++++++++||..+ +++|++..
T Consensus         1 DviGvEi~galKNi~Aia~Gi~~gl~~g~~~~~~N~~aali~~g~~Em~~~~~~~g~~~~   60 (155)
T d1txga1           1 DIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDRE   60 (155)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGG
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhHhhHHHhhcccch
Confidence            8999999999999999999999998652    4799999999999999999 99999754

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.20  E-value=6.6e-11  Score=98.50  Aligned_cols=88  Identities=16%  Similarity=0.197  Sum_probs=67.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|.||+++|..|.++ |     |+|++|+++++...+...        .                +.      
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~-g-----~~v~~~~~~~~~~~~~~~--------~----------------~~------   44 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSR-G-----VEVVTSLEGRSPSTIERA--------R----------------TV------   44 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT-T-----CEEEECCTTCCHHHHHHH--------H----------------HH------
T ss_pred             CEEEEEcHHHHHHHHHHHHHHC-C-----CeEEEEcCchhHHHHHhh--------h----------------cc------
Confidence            8999999999999999999999 8     999999988764322110        0                00      


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEee
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA  197 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~  197 (333)
                                             .+  ..+++++++++|+||+|||.+...+++.++.+.++     +.+|.++
T Consensus        45 -----------------------~~--~~~~~e~~~~~diIi~~v~~~~~~~~~~~~~~~~~-----~~~id~s   88 (152)
T d1i36a2          45 -----------------------GV--TETSEEDVYSCPVVISAVTPGVALGAARRAGRHVR-----GIYVDIN   88 (152)
T ss_dssp             -----------------------TC--EECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTCC-----SEEEECS
T ss_pred             -----------------------cc--cccHHHHHhhcCeEEEEecCchHHHHHHhhcccCC-----ceeeccC
Confidence                                   11  23466788999999999999998889888877653     4566554

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.17  E-value=7.5e-11  Score=98.58  Aligned_cols=197  Identities=11%  Similarity=0.060  Sum_probs=113.7

Q ss_pred             ceEEEE-CCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           44 LRIVGV-GAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        44 ~kI~II-GaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      |||+|+ |+|.||++||..|+++ |     |+|++|+|++++++++..+     +...           .+.        
T Consensus         1 Mki~vigGaG~iG~alA~~la~~-G-----~~V~l~~R~~e~~~~l~~~-----i~~~-----------~~~--------   50 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATL-G-----HEIVVGSRREEKAEAKAAE-----YRRI-----------AGD--------   50 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTT-T-----CEEEEEESSHHHHHHHHHH-----HHHH-----------HSS--------
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHHH-----HHhc-----------CCC--------
Confidence            899999 7899999999999999 8     9999999999877654321     1111           000        


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                                              ......+........+....+++.....+.+..+......    ............
T Consensus        51 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  102 (212)
T d1jaya_          51 ------------------------ASITGMKNEDAAEACDIAVLTIPWEHAIDTARDLKNILRE----KIVVSPLVPVSR  102 (212)
T ss_dssp             ------------------------CCEEEEEHHHHHHHCSEEEECSCHHHHHHHHHHTHHHHTT----SEEEECCCCEEC
T ss_pred             ------------------------ceEEeeccccccchhhhhhhheeeeccchHHHHhhhhhcc----cccccccccccc
Confidence                                    1112233444456778888888887777666655543322    222222222111


Q ss_pred             cc--cCCccCCCHHHHHHhHhCCCCCcEEEE---cCCCchHHHhcc-CceeEEEeCChhhHHHH-HHHhCCCCeEEEecC
Q 019978          203 EL--EAVPRIITPTQMINRATGVPIENILYL---GGPNIASEIYNK-EYANARICGAEKWRKPL-AKFLRRPHFTVWDNG  275 (333)
Q Consensus       203 ~~--~~~~~~~~~se~i~~~lg~~~~~~~vl---~GP~~a~ev~~~-~~~~~~~~~~~~~~~~l-~~ll~~~~~~v~~s~  275 (333)
                      ..  ..........+.....+...  .....   .++....+.... .++....+.+......+ ..+.+..+|+.+   
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~a~~~~~~~~~~~~g~~~~---  177 (212)
T d1jaya_         103 GAKGFTYSSERSAAEIVAEVLESE--KVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPL---  177 (212)
T ss_dssp             CTTCCEECCSSCHHHHHHHHHTCS--CEEECCTTCCHHHHHCTTCCCCEEEEEEESCHHHHHHHHHHHHHSTTEEEE---
T ss_pred             ccccccccccchhhhhhhhhhhhh--cccccceeecHHHhcCcccccCccceEEeCCHHHHHHHHHHHhhCCCeEEE---
Confidence            10  00113345566666666432  11111   122222222222 23333345555444444 445666789876   


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhccCCC
Q 019978          276 DLVTHEVMGGLKNVYAIGAGMVAALTNE  303 (333)
Q Consensus       276 Di~gve~~~alkNv~Ai~~Gi~~gl~~~  303 (333)
                      |+=+.+.++.++|+.++.++++.+.+.+
T Consensus       178 ~~G~l~~a~~~e~~~~l~~~~~~~~~~g  205 (212)
T d1jaya_         178 DAGPLSNSRLVESLTPLILNIMRFNGMG  205 (212)
T ss_dssp             EEESGGGHHHHHTHHHHHHHHHHHHTCC
T ss_pred             EeChHHHHHHHHhHHHHHHHHHHhCCCC
Confidence            4445677889999999999999887763

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.14  E-value=6.9e-11  Score=100.81  Aligned_cols=156  Identities=12%  Similarity=0.110  Sum_probs=99.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      .+|+|||+|.||++||..|.++ |     ++|++|+|++++++++.+++                     .+..      
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~l~~~~---------------------~~~~------   49 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDH-G-----FVVCAFNRTVSKVDDFLANE---------------------AKGT------   49 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSTHHHHHHHHTT---------------------TTTS------
T ss_pred             CcEEEEeEhHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHHhc---------------------cccc------
Confidence            5899999999999999999999 8     99999999998776532211                     0000      


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-hhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps-~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                       ..                   .......++.+++.++|.+++++|+ ..+.++...+.+.+++   ++++|.++..-..
T Consensus        50 -~~-------------------~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~v~~~l~~~~~~---g~iiid~sT~~~~  106 (176)
T d2pgda2          50 -KV-------------------LGAHSLEEMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDI---GDIIIDGGNSEYR  106 (176)
T ss_dssp             -SC-------------------EECSSHHHHHHHBCSSCEEEECSCTTHHHHHHHHHHHHHCCT---TCEEEECSCCCHH
T ss_pred             -cc-------------------cchhhhhhhhhhhcccceEEEecCchHHHHHHHHHHHhcccc---CcEEEecCcchhH
Confidence             00                   0111234555678899999999987 4789999999998887   7788876543332


Q ss_pred             cccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEEEeCChhhHHHHHHHhCCC
Q 019978          203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRP  267 (333)
Q Consensus       203 ~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~~~~~~~~~~~l~~ll~~~  267 (333)
                      ..      ....+.+.+ .+.......+..||..|.   .+. + ++++++++..++++.+|+.-
T Consensus       107 ~~------~~~~~~~~~-~g~~~ldapvsGg~~~A~---~G~-~-~~~gG~~~~~~~~~~il~~~  159 (176)
T d2pgda2         107 DT------MRRCRDLKD-KGILFVGSGVSGGEDGAR---YGP-S-LMPGGNKEAWPHIKAIFQGI  159 (176)
T ss_dssp             HH------HHHHHHHHH-TTCEEEEEEEESHHHHHH---HCC-E-EEEEECTTTHHHHHHHHHHH
T ss_pred             HH------HHHHHHHHh-cCCceeccccccCccccc---CCc-E-EEcCCCHHHHHHHHHHHHHH
Confidence            21      112222222 222112223445554443   343 3 35677777788888887653

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.13  E-value=1.5e-10  Score=98.57  Aligned_cols=157  Identities=10%  Similarity=0.147  Sum_probs=95.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      .|||+|||+|.||++||..|.++ |     ++|.+|+|++++++++.+++        .        +....+       
T Consensus         1 ~MkIGvIGlG~MG~~ma~~L~~~-G-----~~V~~~dr~~~~~~~l~~~~--------~--------~~~~~~-------   51 (178)
T d1pgja2           1 SMDVGVVGLGVMGANLALNIAEK-G-----FKVAVFNRTYSKSEEFMKAN--------A--------SAPFAG-------   51 (178)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHHHHHT--------T--------TSTTGG-------
T ss_pred             CCEEEEEeehHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHHHHHcC--------C--------cccccc-------
Confidence            38999999999999999999999 8     99999999998776543221        0        000000       


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHH---HHhcCCCEEEEecCc-hhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQ---EAVWDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~---ea~~~aDlIIlaVps-~~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                              ......+..   ..+..++.+++++++ ..+..++..+...+.+   +++++.+++
T Consensus        52 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~iii~~st  104 (178)
T d1pgja2          52 ------------------------NLKAFETMEAFAASLKKPRKALILVQAGAATDSTIEQLKKVFEK---GDILVDTGN  104 (178)
T ss_dssp             ------------------------GEEECSCHHHHHHHBCSSCEEEECCCCSHHHHHHHHHHHHHCCT---TCEEEECCC
T ss_pred             ------------------------chhhhhhhhHHHHhcccceEEEEeecCcchhhhhhhhhhhhccc---cceecccCc
Confidence                                    222333332   335577777777765 5788889999888877   677877664


Q ss_pred             cCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchH-HHhccCceeEEEeCChhhHHHHHHHhCCCC
Q 019978          199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS-EIYNKEYANARICGAEKWRKPLAKFLRRPH  268 (333)
Q Consensus       199 Gi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~-ev~~~~~~~~~~~~~~~~~~~l~~ll~~~~  268 (333)
                      .....          +..+.+.+..  ..+.++..|-... ..++..++ ++++++++..++++.+|+.-+
T Consensus       105 ~~~~~----------~~~~~~~l~~--~~~~~ldapv~g~~~~a~~g~~-~mvgG~~~~~~~v~pil~~~~  162 (178)
T d1pgja2         105 AHFKD----------QGRRAQQLEA--AGLRFLGMGISGGEEGARKGPA-FFPGGTLSVWEEIRPIVEAAA  162 (178)
T ss_dssp             CCHHH----------HHHHHHHHHT--TTCEEEEEEEESHHHHHHHCCE-EEEEECHHHHHHHHHHHHHHS
T ss_pred             cchhH----------HHHHHHHHhh--cceeEecccccCCcchhcCCcE-EEeeCCHHHHHHHHHHHHHHh
Confidence            43332          1223333321  1122333333322 12222233 466778888888888886533

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.72  E-value=5.2e-08  Score=83.56  Aligned_cols=84  Identities=21%  Similarity=0.228  Sum_probs=58.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      |||+|||+|.+|..+|..|+ . |     ++|+.||.++++++.++.         +.        .|.+.+++.     
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~-g-----~~V~g~Din~~~v~~l~~---------g~--------~p~~e~~l~-----   51 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-L-Q-----NEVTIVDILPSKVDKINN---------GL--------SPIQDEYIE-----   51 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-T-T-----SEEEEECSCHHHHHHHHT---------TC--------CSSCCHHHH-----
T ss_pred             CEEEEECCChhHHHHHHHHH-C-C-----CcEEEEECCHHHHHHHhh---------cc--------cccchhhHH-----
Confidence            89999999999999998886 5 6     999999999987765432         11        111222211     


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST  171 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~  171 (333)
                            +++....         ..+..+++...+..++|++++|||+.
T Consensus        52 ------~~~~~~~---------~~~~~~~~~~~~~~~~~ii~v~vpt~   84 (196)
T d1dlja2          52 ------YYLKSKQ---------LSIKATLDSKAAYKEAELVIIATPTN   84 (196)
T ss_dssp             ------HHHHHSC---------CCEEEESCHHHHHHHCSEEEECCCCC
T ss_pred             ------HHhhhhh---------hhhhccchhhhhhhccccccccCCcc
Confidence                  1111110         25667778777788999999999874

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.67  E-value=5.7e-08  Score=80.64  Aligned_cols=142  Identities=21%  Similarity=0.263  Sum_probs=86.1

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR  124 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~  124 (333)
                      ||+|||+|.||..||..|.++ |     +. ++|+|+.++..+..        ...                        
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~-g-----~~-~~~~~~~~~~~~~~--------~~~------------------------   42 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARR-F-----PT-LVWNRTFEKALRHQ--------EEF------------------------   42 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTT-S-----CE-EEECSSTHHHHHHH--------HHH------------------------
T ss_pred             eEEEEeHHHHHHHHHHHHHhC-C-----CE-EEEeCCHHHHHHHH--------HHc------------------------
Confidence            899999999999999999988 7     65 47888876543211        000                        


Q ss_pred             cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                                            .. ..... +.+.++|++|+++|.. .+..+...+...+.+   ++++|.++. ..++
T Consensus        43 ----------------------~~-~~~~~-~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~~~---~~~iid~sT-~~p~   94 (156)
T d2cvza2          43 ----------------------GS-EAVPL-ERVAEARVIFTCLPTTREVYEVAEALYPYLRE---GTYWVDATS-GEPE   94 (156)
T ss_dssp             ----------------------CC-EECCG-GGGGGCSEEEECCSSHHHHHHHHHHHTTTCCT---TEEEEECSC-CCHH
T ss_pred             ----------------------CC-ccccc-ccccceeEEEecccchhhhhhhhccccccccc---ccccccccc-CCHH
Confidence                                  00 11222 3456899999999875 566667777766665   666665542 2222


Q ss_pred             ccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHH--HhccCceeEEEeCChhhHHHHHHHhC
Q 019978          204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLR  265 (333)
Q Consensus       204 ~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~e--v~~~~~~~~~~~~~~~~~~~l~~ll~  265 (333)
                      +         +..+.+.+..  ..+.++-.|-....  ...|..+ .+++++++..++++.+|+
T Consensus        95 ~---------~~~~~~~~~~--~gi~~ldapVsGg~~~A~~G~L~-~~vgG~~~~~~~~~p~L~  146 (156)
T d2cvza2          95 A---------SRRLAERLRE--KGVTYLDAPVSGGTSGAEAGTLT-VMLGGPEEAVERVRPFLA  146 (156)
T ss_dssp             H---------HHHHHHHHHT--TTEEEEECCEESHHHHHHHTCEE-EEEESCHHHHHHHGGGCT
T ss_pred             H---------HHHHHHHHHH--cCCeEEeccccCchhhhccCCEE-EEEeCCHHHHHHHHHHHH
Confidence            1         1223343421  22344444544322  2334333 466888888899998884

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.54  E-value=3.6e-07  Score=75.60  Aligned_cols=124  Identities=15%  Similarity=0.171  Sum_probs=77.5

Q ss_pred             CCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhh
Q 019978           39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE  118 (333)
Q Consensus        39 ~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~  118 (333)
                      .+....||+|||+|.+|+++|..|+.+ |..   .++.|+|++++.++.   +.    ++     |.+    ...+..  
T Consensus         2 ~~~~~~KI~IiGaG~vG~~~a~~l~~~-~l~---~el~L~Di~~~~~~g---~a----~D-----l~~----~~~~~~--   59 (148)
T d1ldna1           2 KNNGGARVVVIGAGFVGASYVFALMNQ-GIA---DEIVLIDANESKAIG---DA----MD-----FNH----GKVFAP--   59 (148)
T ss_dssp             TTTTSCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHHHH---HH----HH-----HHH----HTTSSS--
T ss_pred             CCCCCCeEEEECcCHHHHHHHHHHHhc-CCC---ceEEEEeeccccccc---hh----cc-----Hhh----CccccC--
Confidence            444567999999999999999999998 732   379999999876432   11    10     110    000000  


Q ss_pred             hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------hhHHHHHHHHHh
Q 019978          119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISR  182 (333)
Q Consensus       119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps----------------~~~~~vl~~i~~  182 (333)
                                                 ..+.+.++..+++++||+||++.-.                ..++++.+++++
T Consensus        60 ---------------------------~~~~~~~~d~~~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~  112 (148)
T d1ldna1          60 ---------------------------KPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMA  112 (148)
T ss_dssp             ---------------------------SCCEEEECCGGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------CCeEEEECCHHHhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHh
Confidence                                       1233333334668999999997632                145667777777


Q ss_pred             hhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCC
Q 019978          183 YWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPI  225 (333)
Q Consensus       183 ~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~  225 (333)
                      +.+    +.+++.++|-+..          +..++.+..|.|.
T Consensus       113 ~~p----~a~~ivvtNPvd~----------~t~~~~k~sg~p~  141 (148)
T d1ldna1         113 SGF----QGLFLVATNPVDI----------LTYATWKFSGLPH  141 (148)
T ss_dssp             HTC----CSEEEECSSSHHH----------HHHHHHHHHTCCG
T ss_pred             hCC----CceEEEecCccHH----------HHHHHHHHHCcCh
Confidence            654    5677777766553          3355666666543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.52  E-value=5.4e-07  Score=74.40  Aligned_cols=40  Identities=23%  Similarity=0.246  Sum_probs=34.1

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      ..|||+|||+|.+|+++|..|+.+ |..   .+|.++|++++++
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~-~~~---~elvL~D~~~~~~   43 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQ-GIA---EEFVIVDVVKDRT   43 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhc-CCC---cEEEEeecccchh
Confidence            457999999999999999999998 621   4899999998654

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.49  E-value=1.2e-06  Score=72.94  Aligned_cols=121  Identities=17%  Similarity=0.247  Sum_probs=78.5

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ..+||+|||+|.+|+.+|..++.+ +.    .++.++|.+++.++....       .     +++..   ..+.      
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~-~~----~el~L~D~~~~~~~g~a~-------D-----l~~~~---~~~~------   59 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALR-EL----ADVVLYDVVKGMPEGKAL-------D-----LSHVT---SVVD------   59 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHH-TC----CEEEEECSSSSHHHHHHH-------H-----HHHHH---HHTT------
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CC----ceEEEEEeccccchhHHH-------H-----Hhhhc---cccC------
Confidence            457999999999999999999888 62    379999999876542110       0     11000   0000      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC------------ch---------hHHHHHHHH
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP------------ST---------ETKEVFEEI  180 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVp------------s~---------~~~~vl~~i  180 (333)
                          .            +      ..+..+++.+++++++|+|+++..            +.         .++++++++
T Consensus        60 ----~------------~------~~~~~~~~~~~~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i  117 (154)
T d1pzga1          60 ----T------------N------VSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNI  117 (154)
T ss_dssp             ----C------------C------CCEEEECSHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHH
T ss_pred             ----C------------e------eEEeccCchhhhhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHH
Confidence                0            0      146667888888999999999762            11         366667777


Q ss_pred             HhhhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCC
Q 019978          181 SRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP  224 (333)
Q Consensus       181 ~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~  224 (333)
                      .++.+    +.+++.++|-+..          +..++.+..|.+
T Consensus       118 ~~~~p----~aiviivsNPvd~----------lt~~~~~~sg~p  147 (154)
T d1pzga1         118 KKYCP----KTFIIVVTNPLDC----------MVKVMCEASGVP  147 (154)
T ss_dssp             HHHCT----TCEEEECCSSHHH----------HHHHHHHHHCCC
T ss_pred             HhcCC----CcEEEEeCCcHHH----------HHHHHHHHhCcC
Confidence            76654    5678878876543          234556666644

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.48  E-value=5.1e-07  Score=73.96  Aligned_cols=39  Identities=21%  Similarity=0.216  Sum_probs=33.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      |||+|||+|.+|+++|..++.+ +..   .++.|+|+++++++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~-~l~---~el~L~Di~~~~~~   39 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMK-GFA---REMVLIDVDKKRAE   39 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCC---CEEEEEeccccccc
Confidence            8999999999999999999888 632   47999999986543

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=98.42  E-value=1.9e-08  Score=90.24  Aligned_cols=195  Identities=17%  Similarity=0.131  Sum_probs=111.9

Q ss_pred             hhhHHHHhhccCCCCC-ceEEEECCCH--HHHHHHH------HHHHhcCCCCCCeeEEEEecCCcch-hhhhh-------
Q 019978           28 RLDELRRLMGKAEGDP-LRIVGVGAGA--WGSVFTA------MLQDSYGYLRDKVLIRIWRRPGRSV-DRATA-------   90 (333)
Q Consensus        28 ~~~~~~~~~~~~~~~~-~kI~IIGaG~--mG~alA~------~La~~~G~~~~~~~V~l~~r~~~~~-~~~~~-------   90 (333)
                      |-.+-....|.++..+ .++.++|+|.  ||..++.      +|++. |     +.|++.|-+++.+ +++..       
T Consensus        24 ~~~~~~~~~~~~~~a~~~~~~~~gagl~~~~~gi~~v~vs~~~fa~~-g-----~~v~~~d~d~~~v~~~~~~g~~~i~~   97 (242)
T d2b0ja2          24 RACEVAKEVGKPEIALTHSSITYGAELLHLVPDVKEVIVSDPCFAEE-P-----GLVVIDEFDPKEVMEAHLSGNPESIM   97 (242)
T ss_dssp             HHHHHHHHHTCGGGGGCCHHHHHHHHHHHHCTTCCEEEEECGGGGSS-S-----EEEECCCSCHHHHHHHHHTTCGGGTH
T ss_pred             HHHhhhccCCCCccceeeeeeeeeecHHhhhhchhhhhccchhhhhc-C-----CeEEEEeCCHHHHHHHHhcCCchhhc
Confidence            3344444466665443 4588999997  8878877      57888 8     9999999886543 32221       


Q ss_pred             hhHHHHHhhhhhHHHHhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc
Q 019978           91 EHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS  170 (333)
Q Consensus        91 ~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps  170 (333)
                      .+|.+.++...      +..+...++                    +++.++.+-..+++++|+.|+++++|+||+++|.
T Consensus        98 p~l~~~v~~~~------~~~~~~~~~--------------------~~~~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~  151 (242)
T d2b0ja2          98 PKIREVVKAKA------KELPKPPKA--------------------CIHLVHPEDVGLKVTSDDREAVEGADIVITWLPK  151 (242)
T ss_dssp             HHHHHHHHHHH------HTSCCTTTE--------------------EEESSCGGGGTCEEESCHHHHHTTCSEEEECCTT
T ss_pred             chHHHHHHHHH------HhccCCccc--------------------hhhcCCHHHCCCEEECCHHHHHhcCCeEEEeeec
Confidence            11222222110      000000000                    0111111223688999999999999999999986


Q ss_pred             -hhHHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchHHHhccCceeEE
Q 019978          171 -TETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANAR  249 (333)
Q Consensus       171 -~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~ev~~~~~~~~~  249 (333)
                       +.+.+++++|.+++++   +++|+.++. +...         .+..+.+.+..  ..+.++.++..+-....+......
T Consensus       152 ~~~v~~Vi~~I~~~l~~---g~Iiid~ST-i~~~---------~~~~l~e~l~~--kgi~vi~~hp~a~pe~~g~~li~~  216 (242)
T d2b0ja2         152 GNKQPDIIKKFADAIPE---GAIVTHACT-IPTT---------KFAKIFKDLGR--EDLNITSYHPGCVPEMKGQVYIAE  216 (242)
T ss_dssp             CTTHHHHHHHHGGGSCT---TCEEEECSS-SCHH---------HHHHHHHHTTC--TTSEEEECBCSSCTTTCCCEEEEE
T ss_pred             HHHHHHHHHHHHhhCCC---CcEEEecCC-CcHH---------HHHHHHHhccc--CCCEEECCCccCcCccccceEEec
Confidence             5689999999999987   777766543 2221         12334555543  223344443332211223222112


Q ss_pred             EeCChhhHHHHHHHhCCCCe
Q 019978          250 ICGAEKWRKPLAKFLRRPHF  269 (333)
Q Consensus       250 ~~~~~~~~~~l~~ll~~~~~  269 (333)
                      ...+++..+.+.++|+..|-
T Consensus       217 ~~aseE~iekv~elles~Gk  236 (242)
T d2b0ja2         217 GYASEEAVNKLYEIGKIARG  236 (242)
T ss_dssp             SSSCHHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHCC
Confidence            24567889999999986553

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.38  E-value=1.6e-06  Score=71.12  Aligned_cols=38  Identities=18%  Similarity=0.003  Sum_probs=33.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      |||+|||+|.+|+++|..++.+ |.+   .++.|+|++++.+
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~-~~~---~elvL~Di~~~~~   38 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLN-LDV---DEIALVDIAEDLA   38 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-SCC---SEEEEECSSHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhc-CcC---ceEEEEecccchh
Confidence            8999999999999999999988 733   3799999998754

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.37  E-value=6.9e-07  Score=75.56  Aligned_cols=82  Identities=21%  Similarity=0.189  Sum_probs=52.0

Q ss_pred             CceEEEECCCHHHHHHHH--HHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTA--MLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~--~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .|||+|||+|++|++++.  .++.. ..+.. .++.|+|+++++++.....     +..             .....   
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~-~~l~~-~eivL~Did~~~~~~~~~~-----~~~-------------~~~~~---   58 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKT-PGLSG-STVTLMDIDEERLDAILTI-----AKK-------------YVEEV---   58 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTC-GGGTT-CEEEEECSCHHHHHHHHHH-----HHH-------------HHHHT---
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhc-cccCC-CEEEEEeCCchHHHHHHHH-----HHH-------------HHHhc---
Confidence            489999999999987543  24332 11111 5899999998876532110     000             01100   


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP  169 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVp  169 (333)
                          ..                  ..++..++|.++++.+||+|+.++-
T Consensus        59 ----~~------------------~~~i~~~td~~eaL~dad~Vv~~~~   85 (171)
T d1obba1          59 ----GA------------------DLKFEKTMNLDDVIIDADFVINTAM   85 (171)
T ss_dssp             ----TC------------------CCEEEEESCHHHHHTTCSEEEECCC
T ss_pred             ----CC------------------CeEEEEeCChhhcccCCCeEeeecc
Confidence                00                  0257888999999999999999764

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.33  E-value=1.9e-06  Score=70.46  Aligned_cols=39  Identities=15%  Similarity=0.156  Sum_probs=33.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      |||+|||+|.+|+++|..|+.. |..   .++.|+|+++++++
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~-~l~---~el~L~Di~~~~~~   39 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEK-QLA---RELVLLDVVEGIPQ   39 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCC---SEEEEECSSSSHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCC---ceEEEeccccccch
Confidence            8999999999999999999988 632   48999999997653

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=98.31  E-value=2e-06  Score=70.95  Aligned_cols=39  Identities=18%  Similarity=0.086  Sum_probs=33.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +||+|||+|.+|+++|..|+.. |..   .++.|+|+++++++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~-~~~---~elvL~Di~~~~~~   40 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQ-GVA---DDYVFIDANEAKVK   40 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhc-CCC---ceEEEEecccchhh
Confidence            6999999999999999999988 622   37999999987543

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.23  E-value=5.6e-06  Score=67.76  Aligned_cols=39  Identities=10%  Similarity=-0.032  Sum_probs=30.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .||+|||+|.+|+++|..++.+ +..   .++.|+|++++.++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~-~l~---~el~L~D~~~~~~~   40 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALR-QTA---NELVLIDVFKEKAI   40 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCS---SEEEEECCC---CC
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeccCCccc
Confidence            5999999999999999999988 632   37999999997653

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.23  E-value=7.3e-06  Score=66.98  Aligned_cols=106  Identities=17%  Similarity=0.174  Sum_probs=67.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      +||+|||+|.+|+++|..|+.+ +.    .++.++|.+++.++...       ..-.            +.....   + 
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~-~l----~dl~l~D~~~~~~~~~~-------~Dl~------------~~~~~~---~-   53 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAK-EL----GDIVLLDIVEGVPQGKA-------LDLY------------EASPIE---G-   53 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TC----SEEEEECSSSSHHHHHH-------HHHH------------TTHHHH---T-
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-Cc----ceEEEEeeccccchhHH-------HHhh------------cccccc---C-
Confidence            5999999999999999999988 62    37999999887543211       1100            000000   0 


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc--h--------------hHHHHHHHHHhhhhcc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS--T--------------ETKEVFEEISRYWKER  187 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps--~--------------~~~~vl~~i~~~l~~~  187 (333)
                                  +  +      ..+..+.|.++ +.++|+||++.-.  .              .++++++++.++.+  
T Consensus        54 ------------~--~------~~i~~~~d~~~-~~~advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p--  110 (142)
T d1uxja1          54 ------------F--D------VRVTGTNNYAD-TANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSP--  110 (142)
T ss_dssp             ------------C--C------CCEEEESCGGG-GTTCSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCT--
T ss_pred             ------------C--C------CEEEecCcHHH-hcCCCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCC--
Confidence                        0  0      14666778765 7899999998732  1              34566666666543  


Q ss_pred             CCCCEEEEeeecCcc
Q 019978          188 ITVPVIISLAKGVEA  202 (333)
Q Consensus       188 ~~~~~Ivs~~kGi~~  202 (333)
                        +.+++.++|-+..
T Consensus       111 --~aivivvtNPvDv  123 (142)
T d1uxja1         111 --NAVIIMVNNPLDA  123 (142)
T ss_dssp             --TCEEEECSSSHHH
T ss_pred             --CceEEEeCCchHH
Confidence              5677777765543

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=98.23  E-value=5.7e-06  Score=67.87  Aligned_cols=39  Identities=26%  Similarity=0.303  Sum_probs=33.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      +.||+|||+|.+|+++|..++.+ |..   .++.|+|++++.+
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~-~l~---~ElvL~D~~~~~~   39 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQR-GIA---REIVLEDIAKERV   39 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCC---SEEEEECSSHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc-CCC---cEEEEEEeccccc
Confidence            35999999999999999999988 732   3799999998654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.20  E-value=1.7e-06  Score=69.36  Aligned_cols=38  Identities=18%  Similarity=0.226  Sum_probs=35.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      |||.|+|+|.+|..++..|.+. |     ++|++++.+++.+++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~-g-----~~v~vid~d~~~~~~   38 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEK-G-----HDIVLIDIDKDICKK   38 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-C-----CCcceecCChhhhhh
Confidence            8999999999999999999998 8     999999999987654

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.20  E-value=7.3e-07  Score=73.48  Aligned_cols=38  Identities=21%  Similarity=0.265  Sum_probs=35.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +||.|||||.||..+|..|+++ |     |+|++|+|+.+++++
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~-g-----~~V~v~dr~~~~a~~   40 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDS-G-----IKVTVACRTLESAKK   40 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECChHHHHH
Confidence            6999999999999999999999 8     999999999987654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.11  E-value=2.8e-06  Score=67.81  Aligned_cols=39  Identities=15%  Similarity=0.187  Sum_probs=35.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA   88 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~   88 (333)
                      +++.|+|+|.+|..+|..|.+. |     ++|++++.+++.++++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~-g-----~~vvvid~d~~~~~~~   39 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRM-G-----HEVLAVDINEEKVNAY   39 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-T-----CCCEEEESCHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-C-----CeEEEecCcHHHHHHH
Confidence            4789999999999999999999 8     9999999999876643

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=98.08  E-value=1.1e-05  Score=67.45  Aligned_cols=38  Identities=13%  Similarity=0.096  Sum_probs=32.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      .||+|||+|.+|+++|..|+.. |..   -++.|+|++++.+
T Consensus        21 ~KV~IIGaG~VG~~~A~~l~~~-~l~---~ElvLiD~~~~~a   58 (160)
T d1i0za1          21 NKITVVGVGQVGMACAISILGK-SLA---DELALVDVLEDKL   58 (160)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-TCC---SEEEEECSCHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCC---cEEEEEEeccchh
Confidence            5999999999999999999998 732   3799999998654

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.05  E-value=2.1e-05  Score=65.95  Aligned_cols=123  Identities=12%  Similarity=0.138  Sum_probs=73.1

Q ss_pred             CceEEEECCCHHHH--HHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGAGAWGS--VFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGaG~mG~--alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .|||+|||||+.|+  +++..+... ..+.. -++.++|++++..+ .  +.    +...+         ..+....   
T Consensus         1 k~KI~iIGaGs~~~~~~~~~l~~~~-~~~~~-~eI~L~Di~e~~~~-~--~~----~d~~~---------~~~~~~~---   59 (169)
T d1s6ya1           1 RLKIATIGGGSSYTPELVEGLIKRY-HELPV-GELWLVDIPEGKEK-L--EI----VGALA---------KRMVEKA---   59 (169)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTT-TTCCE-EEEEEECCGGGHHH-H--HH----HHHHH---------HHHHHHT---
T ss_pred             CcEEEEECCChhhHHHHHHHHHHhc-cccCC-CEEEEEcCCccHHH-H--HH----HHHHH---------HHHHHhc---
Confidence            38999999997764  445555543 21211 48999999886421 1  11    11100         0011110   


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh----------------------------
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE----------------------------  172 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~----------------------------  172 (333)
                          ..+                  ..+..++|..++++++|+||++.....                            
T Consensus        60 ----~~~------------------~~~~~~td~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~  117 (169)
T d1s6ya1          60 ----GVP------------------IEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLF  117 (169)
T ss_dssp             ----TCC------------------CEEEEESCHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHH
T ss_pred             ----CCC------------------ceeeecCCchhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhh
Confidence                010                  256788999899999999999885321                            


Q ss_pred             --------HHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhC
Q 019978          173 --------TKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATG  222 (333)
Q Consensus       173 --------~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg  222 (333)
                              +.++++++.++.+    ++.++..+|-+..          +...+.+.+|
T Consensus       118 ~~~~n~~i~~~i~~~i~~~~p----da~~i~vtNPvdv----------~t~~~~k~~p  161 (169)
T d1s6ya1         118 KGLRTIPVILDIIRDMEELCP----DAWLINFTNPAGM----------VTEAVLRYTK  161 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCT----TCEEEECSSSHHH----------HHHHHHHHCC
T ss_pred             hccccHHHHHHHHHHHhhcCC----CeEEEEeCChHHH----------HHHHHHHHCC
Confidence                    4666677777644    6788888876553          2345666664

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.04  E-value=1.1e-05  Score=67.88  Aligned_cols=121  Identities=13%  Similarity=0.171  Sum_probs=74.5

Q ss_pred             CceEEEECCCHHHHHHH--HHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGAGAWGSVFT--AMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA--~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ..||+|||+|+.|+..+  ..+... -.+.. .++.|+|.++++++...     ..+..             +....   
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~-~~l~~-~eivL~Did~~~~~~~~-----~~~~~-------------~~~~~---   59 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHL-EEFPI-RKLKLYDNDKERQDRIA-----GACDV-------------FIREK---   59 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTT-TTSCE-EEEEEECSCHHHHHHHH-----HHHHH-------------HHHHH---
T ss_pred             CceEEEECCChhhhHHHHHHHHhhh-hhcCC-CEEEEEcCChhHHHHHH-----HHHHH-------------HHHHh---
Confidence            46999999999987644  333322 11211 48999999998764211     11111             01100   


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc------------------------------
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS------------------------------  170 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps------------------------------  170 (333)
                          ..+                  ..+..++|.++++++||+||++.-.                              
T Consensus        60 ----~~~------------------~~~~~~~d~~eal~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~  117 (167)
T d1u8xx1          60 ----APD------------------IEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIA  117 (167)
T ss_dssp             ----CTT------------------SEEEEESCHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHH
T ss_pred             ----CCC------------------cceEecCChhhccCCCCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchh
Confidence                000                  1577889999999999999998732                              


Q ss_pred             ------hhHHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhC
Q 019978          171 ------TETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATG  222 (333)
Q Consensus       171 ------~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg  222 (333)
                            ..+.++++++.++.+    +..++..+|-+..          +.+.+.+.+|
T Consensus       118 ~~~r~i~ii~~i~~~i~~~~P----~A~li~~TNPvdv----------~t~~~~k~~P  161 (167)
T d1u8xx1         118 YGMRSIGGVLEILDYMEKYSP----DAWMLNYSNPAAI----------VAEATRRLRP  161 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCT----TCEEEECCSCHHH----------HHHHHHHHST
T ss_pred             eehhhHHHHHHHHHHHHhhCC----CeEEEEeCCHHHH----------HHHHHHHHCC
Confidence                  234566677777654    5788888876553          2356666664

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.01  E-value=1.7e-05  Score=65.46  Aligned_cols=39  Identities=21%  Similarity=0.291  Sum_probs=32.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+||+|||+|.+|+++|..++.+ + +   .++.|||++++.++
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~-~-l---~el~L~Di~~~~~~   41 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQK-N-L---GDVVLFDIVKNMPH   41 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-T-C---CEEEEECSSSSHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC-C-C---CeEEEEeccCCcce
Confidence            36999999999999999888877 5 2   47999999987654

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.98  E-value=1.3e-05  Score=65.62  Aligned_cols=104  Identities=13%  Similarity=0.127  Sum_probs=66.4

Q ss_pred             eEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        45 kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ||+|||| |.+|+++|..|+.+ |..   -++.++|.++.+.+.+         .-.+         ......       
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~-~~~---~elvLiDi~~~~~~a~---------Dl~~---------~~~~~~-------   52 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNS-PLV---SRLTLYDIAHTPGVAA---------DLSH---------IETRAT-------   52 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTC-TTC---SEEEEEESSSHHHHHH---------HHTT---------SSSSCE-------
T ss_pred             eEEEECCCChHHHHHHHHHHhC-Ccc---ceEEEEeccccchhhH---------HHhh---------hhhhcC-------
Confidence            8999996 99999999999988 733   3799999876432211         0000         000000       


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC--c--------------hhHHHHHHHHHhhhhcc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--S--------------TETKEVFEEISRYWKER  187 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVp--s--------------~~~~~vl~~i~~~l~~~  187 (333)
                        .                   ......++..+++++||+||++--  .              ..++++++++.++- + 
T Consensus        53 --~-------------------~~~~~~~~~~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~-p-  109 (144)
T d1mlda1          53 --V-------------------KGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-P-  109 (144)
T ss_dssp             --E-------------------EEEESGGGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-T-
T ss_pred             --C-------------------CeEEcCCChHHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcC-C-
Confidence              0                   012224566678899999999642  2              14677777777763 3 


Q ss_pred             CCCCEEEEeeecCcc
Q 019978          188 ITVPVIISLAKGVEA  202 (333)
Q Consensus       188 ~~~~~Ivs~~kGi~~  202 (333)
                        +.+++.++|-+..
T Consensus       110 --~~iiivvtNPvD~  122 (144)
T d1mlda1         110 --DAMICIISNPVNS  122 (144)
T ss_dssp             --TSEEEECSSCHHH
T ss_pred             --CeEEEEecCchhh
Confidence              5788888876653

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.96  E-value=1.7e-05  Score=66.11  Aligned_cols=79  Identities=18%  Similarity=0.120  Sum_probs=50.4

Q ss_pred             ceEEEECCCHHHHHHHHH-HHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           44 LRIVGVGAGAWGSVFTAM-LQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~-La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      |||+|||+|+.|++++.. ++.....+.. .++.|+|+++++++...     +...              .....     
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~-~el~L~Did~~k~~~~~-----d~~~--------------~~~~~-----   55 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRI-DEVIFYDIDEEKQKIVV-----DFVK--------------RLVKD-----   55 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCC-CEEEEECSCHHHHHHHH-----HHHH--------------HHHTT-----
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCc-cEEEEEecCcHHHHHHH-----HHHH--------------hhhcc-----
Confidence            799999999998887754 3333111111 58999999987654211     0000              00000     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP  169 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVp  169 (333)
                        .                    .++.++++.++++++||+||++.-
T Consensus        56 --~--------------------~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1          56 --R--------------------FKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             --S--------------------SEEEECSSHHHHHTTCSEEEECCC
T ss_pred             --C--------------------ceEEEecCcccccCCCCEEEEecc
Confidence              0                    146778899999999999999764

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.90  E-value=6.3e-05  Score=61.56  Aligned_cols=36  Identities=19%  Similarity=0.344  Sum_probs=30.9

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      |||+|||| |.+|.++|..|+.. |..   .++.|++++++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~-~l~---~el~L~D~~~~   37 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKE-PFM---KDLVLIGREHS   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTC-TTC---CEEEEEECGGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhC-Ccc---cccccccchhh
Confidence            89999996 99999999999887 622   38999999874

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.87  E-value=8.2e-06  Score=69.40  Aligned_cols=90  Identities=19%  Similarity=0.304  Sum_probs=64.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|.+|..+|..+..- |     .+|..|+|++...                                     
T Consensus        42 gk~vgIiG~G~IG~~va~~l~~~-g-----~~v~~~d~~~~~~-------------------------------------   78 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILAAL-G-----AQVRGFSRTPKEG-------------------------------------   78 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHT-T-----CEEEEECSSCCCS-------------------------------------
T ss_pred             CceEEEeccccccccceeeeecc-c-----ccccccccccccc-------------------------------------
Confidence            37999999999999999999876 7     8999999876311                                     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                              ......++++.+..+|+|++++|-. ....++ ++.-..+++   ++++|+++.|=
T Consensus        79 ------------------------~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~---~ailIN~~RG~  131 (181)
T d1qp8a1          79 ------------------------PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAE---DAVFVNVGRAE  131 (181)
T ss_dssp             ------------------------SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCT---TCEEEECSCGG
T ss_pred             ------------------------ceeeeechhhhhhccchhhcccccccccccccccceeeeccc---cceEEeccccc
Confidence                                    0011246778899999999999964 233222 233344555   78999998774


Q ss_pred             cc
Q 019978          201 EA  202 (333)
Q Consensus       201 ~~  202 (333)
                      ..
T Consensus       132 iv  133 (181)
T d1qp8a1         132 VL  133 (181)
T ss_dssp             GB
T ss_pred             cc
Confidence            33

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=4.2e-05  Score=62.98  Aligned_cols=94  Identities=15%  Similarity=0.172  Sum_probs=61.3

Q ss_pred             CceEEEECCCHHHHH-HHHHHHHhcCCCCCCeeE-EEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGaG~mG~a-lA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      .|||+|||+|.||.- ....+... .    +.++ -+|++++++++.+..        .             +       
T Consensus         1 Kiri~iIG~G~~g~~~~~~~l~~~-~----~~~i~~v~d~~~~~~~~~~~--------~-------------~-------   47 (164)
T d1tlta1           1 KLRIGVVGLGGIAQKAWLPVLAAA-S----DWTLQGAWSPTRAKALPICE--------S-------------W-------   47 (164)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHSC-S----SEEEEEEECSSCTTHHHHHH--------H-------------H-------
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHhC-C----CcEEEEEEechhHhhhhhhh--------c-------------c-------
Confidence            379999999999975 45555543 2    2564 478898876543210        0             0       


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecC
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                                .+...++.++.+++.|+|++++|+....+++.....   .   +..|+ +-|-+
T Consensus        48 --------------------------~~~~~~~~~~l~~~~D~V~I~tp~~~h~~~~~~al~---~---gk~V~-~EKPl   94 (164)
T d1tlta1          48 --------------------------RIPYADSLSSLAASCDAVFVHSSTASHFDVVSTLLN---A---GVHVC-VDKPL   94 (164)
T ss_dssp             --------------------------TCCBCSSHHHHHTTCSEEEECSCTTHHHHHHHHHHH---T---TCEEE-EESSS
T ss_pred             --------------------------cccccccchhhhhhcccccccccchhcccccccccc---c---cceee-ccccc
Confidence                                      122345677777899999999999988777777654   2   44443 56655


Q ss_pred             cc
Q 019978          201 EA  202 (333)
Q Consensus       201 ~~  202 (333)
                      ..
T Consensus        95 a~   96 (164)
T d1tlta1          95 AE   96 (164)
T ss_dssp             CS
T ss_pred             cC
Confidence            54

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.84  E-value=9.1e-05  Score=60.84  Aligned_cols=113  Identities=16%  Similarity=0.190  Sum_probs=66.8

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCC--CeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhh
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRD--KVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE  118 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~--~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~  118 (333)
                      ++|||+|||| |.+|+++|..|+.. +.+..  ..++.+++.++....   .+++.  +.-.         ... .+   
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~-~~~~~~~~~~L~l~d~~~~~~~---~~~l~--~~~~---------~~~-~~---   62 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNG-SVFGKDQPIILVLLDITPMMGV---LDGVL--MELQ---------DCA-LP---   62 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTT-TTTCTTCCEEEEEECCGGGHHH---HHHHH--HHHH---------HTC-CT---
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHH-HhcCCCCccEEEEecCccchhh---hhhhh--hhhc---------ccc-cc---
Confidence            6799999996 99999999999875 43211  135667766653221   11110  0000         000 00   


Q ss_pred             hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC--c--------------hhHHHHHHHHHh
Q 019978          119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--S--------------TETKEVFEEISR  182 (333)
Q Consensus       119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVp--s--------------~~~~~vl~~i~~  182 (333)
                             .                  ...+...++.+++++++|+||++--  .              ..++++.+.+.+
T Consensus        63 -------~------------------~~~~~~~~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k  117 (154)
T d5mdha1          63 -------L------------------LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDK  117 (154)
T ss_dssp             -------T------------------EEEEEEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred             -------c------------------ccccccCcccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHh
Confidence                   0                  0146677888899999999999652  2              246666666666


Q ss_pred             hhhccCCCCEEEEeeecCc
Q 019978          183 YWKERITVPVIISLAKGVE  201 (333)
Q Consensus       183 ~l~~~~~~~~Ivs~~kGi~  201 (333)
                      +.++   ..+++..+|-+.
T Consensus       118 ~a~~---~~~iivvsNPvD  133 (154)
T d5mdha1         118 YAKK---SVKVIVVGNPAN  133 (154)
T ss_dssp             HSCT---TCEEEECSSSHH
T ss_pred             hCCC---ceEEEEecCcHH
Confidence            6554   445555665443

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.84  E-value=2.3e-05  Score=65.29  Aligned_cols=38  Identities=16%  Similarity=0.150  Sum_probs=32.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      .||+|||+|.+|+++|..|+.. |..   .++.|+|++++.+
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~-~l~---~elvL~D~~~~~a   57 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLK-GLA---DELALVDADTDKL   57 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-TSC---SEEEEECSCHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCchhh
Confidence            5999999999999999999988 631   3799999988654

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.82  E-value=1.7e-05  Score=65.92  Aligned_cols=41  Identities=22%  Similarity=0.255  Sum_probs=34.7

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      ..++|.|||+|.||..++..|... |.    .++++|.|+.+++++
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~-g~----~~i~v~nRt~~ka~~   63 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDR-GV----RAVLVANRTYERAVE   63 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHH-CC----SEEEEECSSHHHHHH
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhc-CC----cEEEEEcCcHHHHHH
Confidence            346999999999999999999998 71    379999999876653

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.74  E-value=0.00013  Score=59.88  Aligned_cols=52  Identities=15%  Similarity=0.070  Sum_probs=35.4

Q ss_pred             CeEEecCHHHHhcCCCEEEEec--Cc--------------hhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          147 PLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       147 ~i~~t~d~~ea~~~aDlIIlaV--ps--------------~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                      .+..+++..++++++|+||++-  |.              ..++++.+.+.++.++   +..++.++|-+.
T Consensus        67 ~~~~~~~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~---~~~vivvsNPvD  134 (154)
T d1y7ta1          67 GLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK---DVKVLVVGNPAN  134 (154)
T ss_dssp             EEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCT---TCEEEECSSSHH
T ss_pred             ccccCCchhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCC---CcEEEEecCcHH
Confidence            4667788888999999999965  21              1355666666666554   566766676443

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.71  E-value=6.1e-05  Score=62.67  Aligned_cols=87  Identities=14%  Similarity=0.181  Sum_probs=58.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      ++||+|+|+|.||...+..+... .    +.+++ +++++++....                                  
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~~-~----~~elvav~~~~~~~~~~----------------------------------   43 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAKQ-P----DMDLVGIFSRRATLDTK----------------------------------   43 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTC-S----SEEEEEEEESSSCCSSS----------------------------------
T ss_pred             cceEEEECChHHHHHHHHHHHhC-C----CcEEEEEEecccccccc----------------------------------
Confidence            47999999999999999988765 2    15544 66777643210                                  


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                              .......+.++...+.|+|++|+|+....+++....   ..   +..+|.+.+
T Consensus        44 ------------------------~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~~a~~aL---~a---G~~vv~~~~   90 (170)
T d1f06a1          44 ------------------------TPVFDVADVDKHADDVDVLFLCMGSATDIPEQAPKF---AQ---FACTVDTYD   90 (170)
T ss_dssp             ------------------------SCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHHHHH---TT---TSEEECCCC
T ss_pred             ------------------------cccccchhhhhhccccceEEEeCCCcccHHHHHHHH---HC---CCcEEEecC
Confidence                                    023344555566778999999999997766665543   33   455664444

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.69  E-value=7.6e-05  Score=62.44  Aligned_cols=98  Identities=14%  Similarity=0.110  Sum_probs=64.4

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .+||+|||+|.||...+..+... .    +.+|+ +++++++++++..        +.             +        
T Consensus         1 kiki~iIG~G~~g~~~~~~l~~~-~----~~~i~ai~d~~~~~~~~~~--------~~-------------~--------   46 (184)
T d1ydwa1           1 QIRIGVMGCADIARKVSRAIHLA-P----NATISGVASRSLEKAKAFA--------TA-------------N--------   46 (184)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHC-T----TEEEEEEECSSHHHHHHHH--------HH-------------T--------
T ss_pred             CeEEEEEcCCHHHHHHHHHHHhC-C----CCEEEEEEeCCccccccch--------hc-------------c--------
Confidence            37999999999999999888765 3    26665 6788876543211        00             0        


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                         .++                  ...++.+|.++.++  +.|+|++++|+....+.+....+   .   +..|+ +-|-
T Consensus        47 ---~~~------------------~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~~~~~~l~---~---g~~v~-~EKP   98 (184)
T d1ydwa1          47 ---NYP------------------ESTKIHGSYESLLEDPEIDALYVPLPTSLHVEWAIKAAE---K---GKHIL-LEKP   98 (184)
T ss_dssp             ---TCC------------------TTCEEESSHHHHHHCTTCCEEEECCCGGGHHHHHHHHHT---T---TCEEE-ECSS
T ss_pred             ---ccc------------------cceeecCcHHHhhhccccceeeecccchhhcchhhhhhh---c---cceee-cccc
Confidence               010                  13456788888764  57999999999988777766554   2   34443 5555


Q ss_pred             Ccc
Q 019978          200 VEA  202 (333)
Q Consensus       200 i~~  202 (333)
                      +..
T Consensus        99 ~~~  101 (184)
T d1ydwa1          99 VAM  101 (184)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            443

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=0.00022  Score=58.13  Aligned_cols=36  Identities=14%  Similarity=0.299  Sum_probs=28.2

Q ss_pred             ceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      |||+||| +|.+|+++|..|+...+..   .++.++|.++
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~---~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSG---SELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTT---CEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCC---cEEEEecccc
Confidence            8999999 5999999999886541211   5899999864

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.60  E-value=0.00012  Score=61.77  Aligned_cols=93  Identities=28%  Similarity=0.434  Sum_probs=71.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc-hhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~-~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      ++|+|||.|+=|.+=|..|.++ |     .+|++--|.... .++.                          +       
T Consensus        17 k~IaViGYGsQG~AhAlNLrDS-G-----~~V~VGLr~gs~s~~~A--------------------------~-------   57 (182)
T d1np3a2          17 KKVAIIGYGSQGHAHACNLKDS-G-----VDVTVGLRSGSATVAKA--------------------------E-------   57 (182)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECCTTCHHHHHH--------------------------H-------
T ss_pred             CEEEEEeeCcHhHHHHhhhhhc-C-----CCEEEEcCCCCccHHHH--------------------------h-------
Confidence            7999999999999999999999 8     899988776531 1110                          0       


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHH-HHHhhhhccCCCCEEEEeeecCc
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~-~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                .+||            ++ -+.+|+++.+|+|++.+|.....++++ +|.+++++   ++. +.++-|+.
T Consensus        58 ----------~~Gf------------~v-~~~~eA~~~aDiim~L~PD~~q~~vy~~~I~p~lk~---g~~-L~FaHGfn  110 (182)
T d1np3a2          58 ----------AHGL------------KV-ADVKTAVAAADVVMILTPDEFQGRLYKEEIEPNLKK---GAT-LAFAHGFS  110 (182)
T ss_dssp             ----------HTTC------------EE-ECHHHHHHTCSEEEECSCHHHHHHHHHHHTGGGCCT---TCE-EEESCCHH
T ss_pred             ----------hhcc------------cc-ccHHHHhhhcCeeeeecchHHHHHHHHHhhhhhcCC---CcE-EEEeccce
Confidence                      0222            22 457789999999999999999999995 79999997   554 45677766


Q ss_pred             c
Q 019978          202 A  202 (333)
Q Consensus       202 ~  202 (333)
                      .
T Consensus       111 I  111 (182)
T d1np3a2         111 I  111 (182)
T ss_dssp             H
T ss_pred             E
Confidence            5

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=97.59  E-value=6.8e-05  Score=61.85  Aligned_cols=82  Identities=12%  Similarity=0.201  Sum_probs=53.2

Q ss_pred             CceEEEECCCHHHHH-HHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGaG~mG~a-lA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .|||+|||+|.||.. ....+... +    +.++.+++++++.++.+.         +.             +.      
T Consensus         1 tirvgiiG~G~~~~~~~~~~l~~~-~----~~~~~~~d~~~~~~~~~~---------~~-------------~~------   47 (167)
T d1xeaa1           1 SLKIAMIGLGDIAQKAYLPVLAQW-P----DIELVLCTRNPKVLGTLA---------TR-------------YR------   47 (167)
T ss_dssp             CEEEEEECCCHHHHHTHHHHHTTS-T----TEEEEEECSCHHHHHHHH---------HH-------------TT------
T ss_pred             CeEEEEEcCCHHHHHHHHHHHHhC-C----CcEEEEEECCHHHHHHHH---------Hh-------------cc------
Confidence            379999999999976 45555444 3    267778888876543211         10             00      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc-CCCEEEEecCchhHHHHHHHHHh
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW-DADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~-~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                          .                     ....+|.++.++ +.|+|++|+|+....+++.....
T Consensus        48 ----~---------------------~~~~~~~~~ll~~~iD~V~I~tp~~~H~~~~~~al~   84 (167)
T d1xeaa1          48 ----V---------------------SATCTDYRDVLQYGVDAVMIHAATDVHSTLAAFFLH   84 (167)
T ss_dssp             ----C---------------------CCCCSSTTGGGGGCCSEEEECSCGGGHHHHHHHHHH
T ss_pred             ----c---------------------ccccccHHHhcccccceecccccccccccccccccc
Confidence                0                     012244555443 67999999999988888877655

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=7.4e-05  Score=63.41  Aligned_cols=95  Identities=15%  Similarity=0.222  Sum_probs=65.7

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ..-++|+|+|.|.+|..+|..+..- |     .+|..|++......                            .     
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~~f-g-----~~v~~~d~~~~~~~----------------------------~-----   82 (188)
T d1sc6a1          42 ARGKKLGIIGYGHIGTQLGILAESL-G-----MYVYFYDIENKLPL----------------------------G-----   82 (188)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCCCC----------------------------T-----
T ss_pred             ccceEEEEeecccchhhhhhhcccc-c-----ceEeeccccccchh----------------------------h-----
Confidence            3458999999999999999998765 7     89999988653110                            0     


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeee
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                                ......++++.+..+|+|++++|-. ....++ ++.-..+++   ++++|+++-
T Consensus        83 --------------------------~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~---~a~lIN~aR  133 (188)
T d1sc6a1          83 --------------------------NATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKP---GSLLINASR  133 (188)
T ss_dssp             --------------------------TCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCT---TEEEEECSC
T ss_pred             --------------------------hhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCC---CCEEEEcCc
Confidence                                      1122357888899999999999854 333333 233334455   789999887


Q ss_pred             cCccc
Q 019978          199 GVEAE  203 (333)
Q Consensus       199 Gi~~~  203 (333)
                      |=..+
T Consensus       134 G~lvd  138 (188)
T d1sc6a1         134 GTVVD  138 (188)
T ss_dssp             SSSBC
T ss_pred             HHhhh
Confidence            74443

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=97.56  E-value=0.00011  Score=62.33  Aligned_cols=98  Identities=19%  Similarity=0.180  Sum_probs=68.1

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .-++|+|+|+|.+|..+|..+..- |     .+|..|++.......                          ...     
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~f-g-----~~v~~~d~~~~~~~~--------------------------~~~-----   85 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPF-D-----VHLHYTDRHRLPESV--------------------------EKE-----   85 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGG-T-----CEEEEECSSCCCHHH--------------------------HHH-----
T ss_pred             cccceeeccccccchhhhhhhhcc-C-----ceEEEEeeccccccc--------------------------ccc-----
Confidence            447999999999999999999765 7     899999987532110                          000     


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                              ..+....++++.++.+|+|++++|-. ..+.++ ++.-..+++   ++++|.++.|
T Consensus        86 ------------------------~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~---ga~lIN~aRG  138 (188)
T d2naca1          86 ------------------------LNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR---GAYIVNTARG  138 (188)
T ss_dssp             ------------------------HTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCT---TEEEEECSCG
T ss_pred             ------------------------ccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCC---CCEEEecCch
Confidence                                    02344577888999999999999864 233333 223344555   7899999888


Q ss_pred             Cccc
Q 019978          200 VEAE  203 (333)
Q Consensus       200 i~~~  203 (333)
                      =..+
T Consensus       139 ~ivd  142 (188)
T d2naca1         139 KLCD  142 (188)
T ss_dssp             GGBC
T ss_pred             hhhh
Confidence            4443

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=97.55  E-value=8.3e-05  Score=63.61  Aligned_cols=96  Identities=13%  Similarity=0.115  Sum_probs=67.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|.+|..+|..+..- |     .+|..|++....-.                           ...      
T Consensus        49 gktvgIiG~G~IG~~va~~l~~f-g-----~~v~~~d~~~~~~~---------------------------~~~------   89 (193)
T d1mx3a1          49 GETLGIIGLGRVGQAVALRAKAF-G-----FNVLFYDPYLSDGV---------------------------ERA------   89 (193)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECTTSCTTH---------------------------HHH------
T ss_pred             CceEEEeccccccccceeeeecc-c-----cceeeccCcccccc---------------------------hhh------
Confidence            37999999999999999999766 7     89999998754210                           000      


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                             ..+...+++++.+..+|+|++++|-. ....++ ++.-..+++   ++++|.++-|=
T Consensus        90 -----------------------~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~---~a~lIN~sRG~  143 (193)
T d1mx3a1          90 -----------------------LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQ---GAFLVNTARGG  143 (193)
T ss_dssp             -----------------------HTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCT---TEEEEECSCTT
T ss_pred             -----------------------hccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCC---CCeEEecCCce
Confidence                                   02344567889899999999999854 232222 222334555   78999998885


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ..+
T Consensus       144 ivd  146 (193)
T d1mx3a1         144 LVD  146 (193)
T ss_dssp             SBC
T ss_pred             EEc
Confidence            544

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=97.54  E-value=6.3e-05  Score=64.60  Aligned_cols=92  Identities=14%  Similarity=0.195  Sum_probs=64.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ++|+|||.|.+|..+|..+..- |     .+|..|++......                           ..        
T Consensus        46 ktvgIiG~G~IG~~va~~l~~f-g-----~~v~~~d~~~~~~~---------------------------~~--------   84 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGF-G-----AKVIAYDPYPMKGD---------------------------HP--------   84 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCSSC---------------------------CT--------
T ss_pred             eeeeeeeccccccccccccccc-c-----eeeeccCCccchhh---------------------------hc--------
Confidence            7999999999999999999765 7     89999998653210                           00        


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecCc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                             .+.. .++++.+..+|+|++++|-. ....++ ++.-..+++   ++++|.++-|=.
T Consensus        85 -----------------------~~~~-~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~---~a~lIN~aRG~v  137 (199)
T d1dxya1          85 -----------------------DFDY-VSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKP---GAIVINTARPNL  137 (199)
T ss_dssp             -----------------------TCEE-CCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCT---TEEEEECSCTTS
T ss_pred             -----------------------chhH-HHHHHHHHhcccceeeecccccccccccHHHhhccCC---ceEEEecccHhh
Confidence                                   1222 46788889999999999864 222222 222234455   788999888754


Q ss_pred             cc
Q 019978          202 AE  203 (333)
Q Consensus       202 ~~  203 (333)
                      ..
T Consensus       138 vd  139 (199)
T d1dxya1         138 ID  139 (199)
T ss_dssp             BC
T ss_pred             hh
Confidence            43

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.54  E-value=4.6e-05  Score=65.49  Aligned_cols=93  Identities=19%  Similarity=0.252  Sum_probs=63.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ++|+|||.|.+|..+|..+..- |     .+|..|++......            .              ..        
T Consensus        44 k~vgIiG~G~IG~~va~~l~~f-g-----~~V~~~d~~~~~~~------------~--------------~~--------   83 (197)
T d1j4aa1          44 QVVGVVGTGHIGQVFMQIMEGF-G-----AKVITYDIFRNPEL------------E--------------KK--------   83 (197)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCHHH------------H--------------HT--------
T ss_pred             CeEEEecccccchhHHHhHhhh-c-----ccccccCccccccc------------c--------------cc--------
Confidence            7999999999999999999655 7     89999987653210            0              00        


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecCc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                             .. ...++++.+..+|+|++++|-. ....++ ++.-..+++   ++++|.++-|=.
T Consensus        84 -----------------------~~-~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~---~a~lIN~sRG~i  136 (197)
T d1j4aa1          84 -----------------------GY-YVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQ---DVVIVNVSRGPL  136 (197)
T ss_dssp             -----------------------TC-BCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCT---TEEEEECSCGGG
T ss_pred             -----------------------ee-eeccccccccccccccccCCccccccccccHHHHhhhCC---ccEEEecCchhh
Confidence                                   01 1256788899999999999953 222222 222234455   788999887754


Q ss_pred             cc
Q 019978          202 AE  203 (333)
Q Consensus       202 ~~  203 (333)
                      .+
T Consensus       137 vd  138 (197)
T d1j4aa1         137 VD  138 (197)
T ss_dssp             BC
T ss_pred             hh
Confidence            44

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.50  E-value=0.00015  Score=62.99  Aligned_cols=105  Identities=21%  Similarity=0.273  Sum_probs=70.8

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCC-CCCCeeEEEEecCCc-chhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGY-LRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~-~~~~~~V~l~~r~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      .++||+|||.|+=|.+=|..|.++ |. .-.+.+|++--|... ..++...                             
T Consensus        43 g~KkIaViGYGsQG~AhAlNLrDS-G~~~~sgv~V~VGLr~gs~S~~kA~~-----------------------------   92 (226)
T d1qmga2          43 GIKQIGVIGWGSQAPAQAQNLKDS-LTEAKSDVVVKIGLRKGSNSFAEARA-----------------------------   92 (226)
T ss_dssp             TCSEEEEECCSSHHHHHHHHHHHH-HHHTTCCCEEEEEECTTCSCHHHHHH-----------------------------
T ss_pred             CCCEEEEEEeccHHHHHHHhChhh-cccccCCceEEEEeCCCChhHHHHHH-----------------------------
Confidence            457899999999999999999996 50 001145776666542 2222111                             


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                    +||...       ...+ -+.+|+++.||+|++.+|.....+++++|.+++++   ++. +.++-|
T Consensus        93 --------------dGf~v~-------~~~v-~~v~EAv~~ADiVmiLlPDe~Q~~vy~~I~p~Lk~---G~~-L~FaHG  146 (226)
T d1qmga2          93 --------------AGFSEE-------NGTL-GDMWETISGSDLVLLLISDSAQADNYEKVFSHMKP---NSI-LGLSHG  146 (226)
T ss_dssp             --------------TTCCGG-------GTCE-EEHHHHHHTCSEEEECSCHHHHHHHHHHHHHHSCT---TCE-EEESSS
T ss_pred             --------------cCCccC-------CCcc-cCHHHHHhhCCEEEEecchHHHHHHHHHHHHhcCC---Cce-eeecch
Confidence                          122100       1112 24567889999999999999999999999999998   554 456667


Q ss_pred             Ccc
Q 019978          200 VEA  202 (333)
Q Consensus       200 i~~  202 (333)
                      +..
T Consensus       147 FnI  149 (226)
T d1qmga2         147 FLL  149 (226)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            654

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=97.48  E-value=0.00038  Score=58.02  Aligned_cols=96  Identities=18%  Similarity=0.117  Sum_probs=61.0

Q ss_pred             CceEEEECCCHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhh
Q 019978           43 PLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR  120 (333)
Q Consensus        43 ~~kI~IIGaG~mG~a-lA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~  120 (333)
                      ++||+|||+|.||.. ....+.+. +   +..++. ++++++++++.+.         +.             +.     
T Consensus         3 kirigiIG~G~~g~~~h~~~l~~~-~---~~~~i~~v~d~~~~~~~~~~---------~~-------------~~-----   51 (181)
T d1zh8a1           3 KIRLGIVGCGIAARELHLPALKNL-S---HLFEITAVTSRTRSHAEEFA---------KM-------------VG-----   51 (181)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTT-T---TTEEEEEEECSSHHHHHHHH---------HH-------------HS-----
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHhC-C---CCeEEEEEEeccHhhhhhhh---------cc-------------cc-----
Confidence            369999999999986 45566543 2   114554 7888876543211         00             00     


Q ss_pred             hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                                .....+|.++.++  +.|+|++|+|+....+++......      +..|+ +-|
T Consensus        52 --------------------------~~~~~~~~~ell~~~~id~v~I~tp~~~h~~~~~~al~~------gk~V~-~EK   98 (181)
T d1zh8a1          52 --------------------------NPAVFDSYEELLESGLVDAVDLTLPVELNLPFIEKALRK------GVHVI-CEK   98 (181)
T ss_dssp             --------------------------SCEEESCHHHHHHSSCCSEEEECCCGGGHHHHHHHHHHT------TCEEE-EES
T ss_pred             --------------------------ccceeeeeeccccccccceeecccccccccccccccccc------chhhh-cCC
Confidence                                      1234578888765  579999999999888888776542      34443 466


Q ss_pred             cCcc
Q 019978          199 GVEA  202 (333)
Q Consensus       199 Gi~~  202 (333)
                      -+..
T Consensus        99 Pl~~  102 (181)
T d1zh8a1          99 PIST  102 (181)
T ss_dssp             SSSS
T ss_pred             CCcC
Confidence            5544

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.43  E-value=0.00039  Score=55.49  Aligned_cols=61  Identities=11%  Similarity=0.144  Sum_probs=41.8

Q ss_pred             hcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCch
Q 019978          158 VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIA  237 (333)
Q Consensus       158 ~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a  237 (333)
                      +.++|+||=.+.+..+.+.++....+      +..+|+.|.|+..+.         .+.+.+..    ....++..|++.
T Consensus        39 ~~~~DVvIDFS~p~~~~~~l~~~~~~------~~p~ViGTTG~~~~~---------~~~i~~~a----k~~pv~~a~N~s   99 (128)
T d1vm6a3          39 LDSPDVVIDFSSPEALPKTVDLCKKY------RAGLVLGTTALKEEH---------LQMLRELS----KEVPVVQAYSRT   99 (128)
T ss_dssp             CSCCSEEEECSCGGGHHHHHHHHHHH------TCEEEECCCSCCHHH---------HHHHHHHT----TTSEEEECSCTH
T ss_pred             hccCCEEEEecCHHHHHHHHHHHHhc------CCCEEEEcCCCCHHH---------HHHHHHHH----hhCCEEeeeccC
Confidence            35689999999999988888876653      467888888988652         13344432    123467778775

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=97.42  E-value=0.00011  Score=62.78  Aligned_cols=97  Identities=15%  Similarity=0.150  Sum_probs=67.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -++|+|||.|.+|..+|..+..- |     .+|..|++.....+.           .              ..       
T Consensus        47 g~tvgIiG~G~IG~~va~~l~~f-g-----~~v~~~d~~~~~~~~-----------~--------------~~-------   88 (191)
T d1gdha1          47 NKTLGIYGFGSIGQALAKRAQGF-D-----MDIDYFDTHRASSSD-----------E--------------AS-------   88 (191)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSCCCHHH-----------H--------------HH-------
T ss_pred             ccceEEeecccchHHHHHHHHhh-c-----cccccccccccccch-----------h--------------hc-------
Confidence            37999999999999999998766 7     899999987643210           0              00       


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHhhhhccCCCCEEEEeeecC
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV  200 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl-~~i~~~l~~~~~~~~Ivs~~kGi  200 (333)
                                             .......++++.+..+|+|++++|-. ..+.++ ++.-..+++   ++++|.++-|=
T Consensus        89 -----------------------~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~---~a~lIN~sRG~  142 (191)
T d1gdha1          89 -----------------------YQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQ---GAIVVNTARGD  142 (191)
T ss_dssp             -----------------------HTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCT---TEEEEECSCGG
T ss_pred             -----------------------ccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCC---ccEEEecCCcc
Confidence                                   01223467888999999999999864 333333 223344565   78999998885


Q ss_pred             ccc
Q 019978          201 EAE  203 (333)
Q Consensus       201 ~~~  203 (333)
                      ..+
T Consensus       143 ivd  145 (191)
T d1gdha1         143 LVD  145 (191)
T ss_dssp             GBC
T ss_pred             chh
Confidence            544

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.00031  Score=58.31  Aligned_cols=74  Identities=16%  Similarity=0.092  Sum_probs=52.3

Q ss_pred             CeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCC
Q 019978          147 PLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIE  226 (333)
Q Consensus       147 ~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~  226 (333)
                      .+.+++++++..+.+|+||=.+.+....+.++....+      +..+|.-|.|+..+.         .+.+++.- .   
T Consensus        58 ~~~~~~~~~~~~~~~DViIDFs~p~~~~~~~~~a~~~------~~~~ViGTTG~~~~~---------~~~i~~~a-~---  118 (162)
T d1diha1          58 GVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQH------GKGMVIGTTGFDEAG---------KQAIRDAA-A---  118 (162)
T ss_dssp             SCCEESCSTTTTTSCSEEEECSCHHHHHHHHHHHHHT------TCEEEECCCCCCHHH---------HHHHHHHT-T---
T ss_pred             CceeeccHHHHhcccceEEEeccHHHHHHHHHHHHhc------cceeEEecCCCcHHH---------HHHHHHHc-C---
Confidence            4667788888888999999999998888888765542      467888888987652         13344432 1   


Q ss_pred             cEEEEcCCCchHH
Q 019978          227 NILYLGGPNIASE  239 (333)
Q Consensus       227 ~~~vl~GP~~a~e  239 (333)
                      .+.++..||+..-
T Consensus       119 ~ipi~~apN~SlG  131 (162)
T d1diha1         119 DIAIVFAANFSMT  131 (162)
T ss_dssp             TSCEEECSCCCHH
T ss_pred             CCCEEEEccccHH
Confidence            1336888999754

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.41  E-value=0.00077  Score=56.51  Aligned_cols=113  Identities=11%  Similarity=0.065  Sum_probs=68.0

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCC--CeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhh
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRD--KVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE  118 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~--~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~  118 (333)
                      ++.||+|+|| |.+|..++..|+.. ..|-.  ..++.+++.++.. +.+  +++.  +.-.         ... .+   
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g-~v~g~~~~i~L~L~di~~~~-~~l--~g~~--mdl~---------d~a-~~---   83 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASG-EVFGQDQPIALKLLGSERSF-QAL--EGVA--MELE---------DSL-YP---   83 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHT-TTTCTTCCEEEEEECCGGGH-HHH--HHHH--HHHH---------TTT-CT---
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcC-cccCCCceEEEEEecCcccc-chh--cchh--hhhc---------ccc-cc---
Confidence            4569999996 99999999999875 32211  1356666766532 111  1110  0000         000 00   


Q ss_pred             hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--------------hhHHHHHHHHHh
Q 019978          119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISR  182 (333)
Q Consensus       119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaV--ps--------------~~~~~vl~~i~~  182 (333)
                             +                  +..+..+++..++++++|+||++-  |.              ..++++.+.+.+
T Consensus        84 -------~------------------~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~  138 (175)
T d7mdha1          84 -------L------------------LREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNA  138 (175)
T ss_dssp             -------T------------------EEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------c------------------ccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence                   0                  024667889999999999999965  21              136666677777


Q ss_pred             hhhccCCCCEEEEeeecCc
Q 019978          183 YWKERITVPVIISLAKGVE  201 (333)
Q Consensus       183 ~l~~~~~~~~Ivs~~kGi~  201 (333)
                      +.++   ++.|+.++|-+.
T Consensus       139 ~a~~---~~~vlvv~NPvd  154 (175)
T d7mdha1         139 VASK---NVKVLVVGNPCN  154 (175)
T ss_dssp             HSCT---TCEEEECSSSHH
T ss_pred             hCCC---CcEEEEecCcHH
Confidence            6665   677777776433

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=97.39  E-value=0.00027  Score=61.15  Aligned_cols=88  Identities=13%  Similarity=0.041  Sum_probs=56.1

Q ss_pred             CCCceEEEECCCHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhh
Q 019978           41 GDPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE  118 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~a-lA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~  118 (333)
                      .++-||+|||+|.||.. +...+... .    +.+|. ++++++++++...+        ..            .++.  
T Consensus        31 ~~~iriaiIG~G~~~~~~~~~~~~~~-~----~~~ivav~d~~~~~a~~~~~--------~~------------~i~~--   83 (221)
T d1h6da1          31 DRRFGYAIVGLGKYALNQILPGFAGC-Q----HSRIEALVSGNAEKAKIVAA--------EY------------GVDP--   83 (221)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHTTTC-S----SEEEEEEECSCHHHHHHHHH--------HT------------TCCG--
T ss_pred             CCCEEEEEEcCcHHHHHHHHHHHHhC-C----CceEEEEecCCHHHHHHHHH--------hh------------cccc--
Confidence            34569999999999974 55555433 2    26655 88998876543211        00            0110  


Q ss_pred             hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHh
Q 019978          119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISR  182 (333)
Q Consensus       119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~  182 (333)
                                                 ..+...+|.++.++  +.|+|++++|.+...+++.+...
T Consensus        84 ---------------------------~~~~~~~d~~ell~~~~iD~V~I~tp~~~H~~~~~~al~  122 (221)
T d1h6da1          84 ---------------------------RKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFK  122 (221)
T ss_dssp             ---------------------------GGEECSSSGGGGGGCTTCCEEEECSCGGGHHHHHHHHHH
T ss_pred             ---------------------------ccccccCchhhhcccccceeeeeccchhhhhhHHHHhhh
Confidence                                       13444567777665  57999999999988777766554

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.30  E-value=0.0006  Score=55.31  Aligned_cols=34  Identities=18%  Similarity=0.138  Sum_probs=28.8

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ||+||| +|.+|+++|..++.+ +..   .++.|+|++.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~-~l~---~el~L~Di~~   36 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALR-DIA---DEVVFVDIPD   36 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCC---SEEEEECCGG
T ss_pred             eEEEECCCCcHHHHHHHHHHhC-CCC---CEEEEEecCC
Confidence            899999 699999999999988 632   3799999754

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.24  E-value=0.00022  Score=60.30  Aligned_cols=96  Identities=19%  Similarity=0.205  Sum_probs=66.6

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      .-++++|+|.|.+|..+|..+..- |     .+|..|++.....+.                          ..      
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~f-g-----~~v~~~d~~~~~~~~--------------------------~~------   84 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAF-G-----AYVVAYDPYVSPARA--------------------------AQ------   84 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECTTSCHHHH--------------------------HH------
T ss_pred             cceeeeeccccchhHHHHHHhhhc-c-----ceEEeecCCCChhHH--------------------------hh------
Confidence            347999999999999999998765 7     899999887642110                          00      


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHhhhhccCCCCEEEEeeec
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~-~~~~vl~-~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                              ..++ ..++++.+..||+|++++|-. .++.++. +.-..+++   ++++|.++-|
T Consensus        85 ------------------------~~~~-~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~---~a~lIN~sRG  136 (184)
T d1ygya1          85 ------------------------LGIE-LLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKP---GVIIVNAARG  136 (184)
T ss_dssp             ------------------------HTCE-ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCT---TEEEEECSCT
T ss_pred             ------------------------cCce-eccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCC---CceEEEecch
Confidence                                    0122 246788899999999999954 3444442 33344565   7899999888


Q ss_pred             Cccc
Q 019978          200 VEAE  203 (333)
Q Consensus       200 i~~~  203 (333)
                      =..+
T Consensus       137 ~iVd  140 (184)
T d1ygya1         137 GLVD  140 (184)
T ss_dssp             TSBC
T ss_pred             hhhh
Confidence            5444

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00011  Score=62.07  Aligned_cols=38  Identities=21%  Similarity=0.205  Sum_probs=34.1

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ++||+|+|+ |.+|++++..|.++ |     |+|+++.|+++++.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~-g-----~~V~~~~R~~~~~~   41 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQA-G-----YEVTVLVRDSSRLP   41 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCGGGSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-c-----CEEEEEEcChhhcc
Confidence            579999995 99999999999999 8     99999999987643

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.16  E-value=0.00096  Score=53.83  Aligned_cols=89  Identities=13%  Similarity=-0.010  Sum_probs=64.1

Q ss_pred             CceEEEECC----CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhh
Q 019978           43 PLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE  118 (333)
Q Consensus        43 ~~kI~IIGa----G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~  118 (333)
                      +++|+|||+    +.+|..+...|.+. |     ++|..+....+.+.                                
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~-g-----~~v~pVnP~~~~i~--------------------------------   60 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEH-G-----YDVYPVNPKYEEVL--------------------------------   60 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHT-T-----CEEEEECTTCSEET--------------------------------
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHC-C-----CEEEEECCcccccC--------------------------------
Confidence            458999996    68999999999998 8     88776655432210                                


Q ss_pred             hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                                  ...+..++++.-+..|++++++|+..+.++++++...      +...+.++.
T Consensus        61 ----------------------------G~~~~~sl~dlp~~iD~v~i~vp~~~~~~~~~e~~~~------g~k~v~~~~  106 (139)
T d2d59a1          61 ----------------------------GRKCYPSVLDIPDKIEVVDLFVKPKLTMEYVEQAIKK------GAKVVWFQY  106 (139)
T ss_dssp             ----------------------------TEECBSSGGGCSSCCSEEEECSCHHHHHHHHHHHHHH------TCSEEEECT
T ss_pred             ----------------------------CCcccccccccCccceEEEEEeCHHHHHHHHHHHHHh------CCCEEEEec
Confidence                                        2233345555445789999999999999999998763      234567777


Q ss_pred             cCccc
Q 019978          199 GVEAE  203 (333)
Q Consensus       199 Gi~~~  203 (333)
                      |...+
T Consensus       107 G~~~e  111 (139)
T d2d59a1         107 NTYNR  111 (139)
T ss_dssp             TCCCH
T ss_pred             cccCH
Confidence            76654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.05  E-value=0.00037  Score=59.04  Aligned_cols=36  Identities=25%  Similarity=0.323  Sum_probs=32.4

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ...+||+|||+|..|.+.|..|+++ |     ++|++++|+.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~-G-----~~V~vier~~   39 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARK-G-----YSVHILARDL   39 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSC
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHC-C-----CCEEEEeCCC
Confidence            3456999999999999999999999 8     9999999864

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.91  E-value=0.0004  Score=57.81  Aligned_cols=40  Identities=15%  Similarity=0.034  Sum_probs=34.4

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      ..++|.|+|+|..+.+++..|.+. +     .+|++++|+.++++.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~-~-----~~i~I~nR~~~~a~~   56 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQA-Q-----QNIVLANRTFSKTKE   56 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHT-T-----CEEEEEESSHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHccc-C-----ceeeeccchHHHHHH
Confidence            346999999999999999999876 5     789999999877654

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.89  E-value=0.0019  Score=51.35  Aligned_cols=91  Identities=16%  Similarity=0.173  Sum_probs=62.1

Q ss_pred             CCceEEEECC----CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchh
Q 019978           42 DPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV  117 (333)
Q Consensus        42 ~~~kI~IIGa----G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~  117 (333)
                      ++++|+|||+    |.+|..+...|.+. |    ..+|+.+....+.+.                               
T Consensus         7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~-~----~g~v~pVnP~~~~i~-------------------------------   50 (129)
T d2csua1           7 NPKGIAVIGASNDPKKLGYEVFKNLKEY-K----KGKVYPVNIKEEEVQ-------------------------------   50 (129)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTC-C----SSEEEEECSSCSEET-------------------------------
T ss_pred             CCCeEEEEccCCCCCCcHHHHHHHHHHc-C----CCcEEEeccCccccC-------------------------------
Confidence            3579999997    88999888888654 3    146666655443211                               


Q ss_pred             hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEee
Q 019978          118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA  197 (333)
Q Consensus       118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~  197 (333)
                                                   .+.+..++.+.=+..|++++++|+..+.+++++.... +    -..++.++
T Consensus        51 -----------------------------G~~~y~sl~dlp~~vDlvvi~vp~~~~~~~~~~~~~~-g----~~~~vi~s   96 (129)
T d2csua1          51 -----------------------------GVKAYKSVKDIPDEIDLAIIVVPKRFVKDTLIQCGEK-G----VKGVVIIT   96 (129)
T ss_dssp             -----------------------------TEECBSSTTSCSSCCSEEEECSCHHHHHHHHHHHHHH-T----CCEEEECC
T ss_pred             -----------------------------CeEeecchhhcCCCCceEEEecChHHhHHHHHHHHHc-C----CCEEEEec
Confidence                                         1223334444334689999999999999999998763 1    23566788


Q ss_pred             ecCcc
Q 019978          198 KGVEA  202 (333)
Q Consensus       198 kGi~~  202 (333)
                      .|+..
T Consensus        97 ~Gf~e  101 (129)
T d2csua1          97 AGFGE  101 (129)
T ss_dssp             CSSTT
T ss_pred             ccccc
Confidence            88875

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.0018  Score=53.66  Aligned_cols=48  Identities=19%  Similarity=0.129  Sum_probs=39.8

Q ss_pred             hhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        29 ~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +|++.|..+..-.. ++++|+|.|.+|..+|..+..- |     .+|++|++++.
T Consensus        11 ~~~~~r~t~~~l~G-k~v~V~GyG~iG~g~A~~~rg~-G-----~~V~v~e~dp~   58 (163)
T d1li4a1          11 IDGIKRATDVMIAG-KVAVVAGYGDVGKGCAQALRGF-G-----ARVIITEIDPI   58 (163)
T ss_dssp             HHHHHHHHCCCCTT-CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHH
T ss_pred             HHHHHHHhCceecC-CEEEEeccccccHHHHHHHHhC-C-----CeeEeeecccc
Confidence            56777777654333 7899999999999999999887 8     89999999984

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.0014  Score=48.71  Aligned_cols=34  Identities=21%  Similarity=0.221  Sum_probs=31.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +||+|+|+|..|.+.|..|.+. |     .+|++||.+.+
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~-g-----~~v~~~D~~~~   39 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLAR-G-----VTPRVMDTRMT   39 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-T-----CCCEEEESSSS
T ss_pred             CEEEEEeECHHHHHHHHHHHHC-C-----CEEEEeeCCcC
Confidence            6899999999999999999999 8     99999998764

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=96.80  E-value=0.0038  Score=50.74  Aligned_cols=43  Identities=19%  Similarity=0.141  Sum_probs=32.0

Q ss_pred             HHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       156 ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                      +...++|++|+|+|...-.++...+... ..   .++||+++.-+-.
T Consensus        60 ~~~~~~DvvF~alp~~~s~~~~~~l~~~-g~---~~~VIDlSsdfR~  102 (147)
T d1mb4a1          60 ESLKQLDAVITCQGGSYTEKVYPALRQA-GW---KGYWIDAASTLRM  102 (147)
T ss_dssp             HHHTTCSEEEECSCHHHHHHHHHHHHHT-TC---CSEEEESSSTTTT
T ss_pred             hhhccccEEEEecCchHHHHHhHHHHHc-CC---ceEEEeCCccccc
Confidence            3468999999999999988888887653 11   3578888765544

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.0013  Score=54.27  Aligned_cols=38  Identities=24%  Similarity=0.226  Sum_probs=34.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      ++|.|+|+|..+.+++..|.+. |     .+|++++|+.+++++
T Consensus        19 k~vlIlGaGGaarai~~al~~~-g-----~~i~I~nRt~~ka~~   56 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSL-D-----CAVTITNRTVSRAEE   56 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHhccc-c-----eEEEeccchHHHHHH
Confidence            7999999999999999999998 7     789999999877654

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.0036  Score=50.74  Aligned_cols=41  Identities=17%  Similarity=0.173  Sum_probs=30.1

Q ss_pred             HhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       157 a~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                      .+.++|++|+|+|...-..+...+... +.   +.+||+.+.-+-
T Consensus        62 ~~~~~DivF~a~~~~~s~~~~~~~~~~-g~---~~~VID~Ss~fR  102 (146)
T d1t4ba1          62 ALKALDIIVTCQGGDYTNEIYPKLRES-GW---QGYWIDAASSLR  102 (146)
T ss_dssp             HHHTCSEEEECSCHHHHHHHHHHHHHT-TC---CCEEEECSSTTT
T ss_pred             hhhcCcEEEEecCchHHHHhhHHHHhc-CC---CeecccCCcccc
Confidence            467999999999999888888877653 21   356888765444

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.74  E-value=0.0014  Score=53.97  Aligned_cols=40  Identities=18%  Similarity=0.392  Sum_probs=34.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      .+||.|+|+|..|.+++..|.+. |.    .+|++++|+.++++.
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~-g~----~~I~I~nR~~~ka~~   56 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNS-GF----EKLKIYARNVKTGQY   56 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHT-TC----CCEEEECSCHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CC----CEEEEecccHHHHHH
Confidence            46899999999999999999988 71    379999999876543

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=96.73  E-value=0.0017  Score=59.99  Aligned_cols=99  Identities=11%  Similarity=0.098  Sum_probs=64.5

Q ss_pred             CCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        40 ~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      ..+..+++|||+|..+..-+..+..-.+   - .+|.+|+|+++..++...     -+.              ...+   
T Consensus       125 ~~da~~l~iiG~G~QA~~~~~a~~~v~~---i-~~V~v~~r~~~~~~~~~~-----~l~--------------~~~g---  178 (340)
T d1x7da_         125 RPNARKMALIGNGAQSEFQALAFHKHLG---I-EEIVAYDTDPLATAKLIA-----NLK--------------EYSG---  178 (340)
T ss_dssp             CTTCCEEEEECCSTTHHHHHHHHHHHSC---C-CEEEEECSSHHHHHHHHH-----HHT--------------TCTT---
T ss_pred             ccCCceEEEEcccHHHHHHHHHHhhhcc---e-eeeEEEecChHHHHHHHH-----hhh--------------hccC---
Confidence            3456799999999999988888766523   1 589999999876543211     000              0001   


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEE
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIIS  195 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs  195 (333)
                                                ..+.+.+++++++++||+|+.++++.....++.  ..++++   ++.|..
T Consensus       179 --------------------------~~v~~~~s~~eav~~ADIi~t~Tas~s~~Pv~~--~~~l~p---G~hI~a  223 (340)
T d1x7da_         179 --------------------------LTIRRASSVAEAVKGVDIITTVTADKAYATIIT--PDMLEP---GMHLNA  223 (340)
T ss_dssp             --------------------------CEEEECSSHHHHHTTCSEEEECCCCSSEEEEEC--GGGCCT---TCEEEE
T ss_pred             --------------------------CCceecCCHHHHHhcCCceeeccccCCCCcccc--hhhcCC---CCEEee
Confidence                                      146678899999999999999996543222222  134555   565543

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.70  E-value=0.0013  Score=56.86  Aligned_cols=38  Identities=26%  Similarity=0.366  Sum_probs=34.0

Q ss_pred             CCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        39 ~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      +..+++||+|||+|.-|.+.|..|+++ |     ++|+++++++
T Consensus        26 ~~~~pkkV~IIGaG~aGLsaA~~L~~~-G-----~~V~vlE~~~   63 (370)
T d2iida1          26 ATSNPKHVVIVGAGMAGLSAAYVLAGA-G-----HQVTVLEASE   63 (370)
T ss_dssp             CCSSCCEEEEECCBHHHHHHHHHHHHH-T-----CEEEEECSSS
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeCCC
Confidence            344668999999999999999999999 8     9999999865

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.61  E-value=0.0028  Score=51.09  Aligned_cols=98  Identities=15%  Similarity=0.224  Sum_probs=60.3

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      +|||+|||| |..|.-|.+.|.+. .+  +..++.....+...-+                          .+....   
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~-~h--P~~~l~~~~s~~~~Gk--------------------------~i~~~~---   49 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDER-DF--PLHRLHLLASAESAGQ--------------------------RMGFAE---   49 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHT-TC--CCSCEEEEECTTTTTC--------------------------EEEETT---
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhc-CC--CceEEEEEeecccCCc--------------------------ceeecc---
Confidence            689999998 99999999999864 30  1146666544432111                          111100   


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                                              ..+.......+...++|++|+|+|...-.++...+..   .   +..||..+.-+-
T Consensus        50 ------------------------~~~~~~~~~~~~~~~~d~vf~a~p~~~s~~~~~~~~~---~---g~~VID~Ss~fR   99 (144)
T d2hjsa1          50 ------------------------SSLRVGDVDSFDFSSVGLAFFAAAAEVSRAHAERARA---A---GCSVIDLSGALE   99 (144)
T ss_dssp             ------------------------EEEECEEGGGCCGGGCSEEEECSCHHHHHHHHHHHHH---T---TCEEEETTCTTT
T ss_pred             ------------------------ccchhccchhhhhccceEEEecCCcchhhhhcccccc---C---CceEEeechhhc
Confidence                                    0111111112335789999999999887777776543   3   678888765554


Q ss_pred             c
Q 019978          202 A  202 (333)
Q Consensus       202 ~  202 (333)
                      .
T Consensus       100 ~  100 (144)
T d2hjsa1         100 P  100 (144)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.57  E-value=0.0012  Score=56.37  Aligned_cols=37  Identities=30%  Similarity=0.428  Sum_probs=33.5

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      ..+||+|||+|.-|.+.|..|+++ |     ++|++++++++.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~-G-----~~v~v~Er~~~~   39 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDA-G-----VDVDVYERSPQP   39 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHC-C-----CCEEEEeCCCCC
Confidence            457999999999999999999999 8     999999987653

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.57  E-value=0.0008  Score=57.05  Aligned_cols=33  Identities=18%  Similarity=0.284  Sum_probs=31.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      |+|+|||+|.-|.+.|..|+++ |     ++|+++.+++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~-G-----~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSR-G-----TDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTT-T-----CCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCC
Confidence            7999999999999999999999 8     9999998865

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.56  E-value=0.0078  Score=49.16  Aligned_cols=37  Identities=14%  Similarity=0.274  Sum_probs=25.0

Q ss_pred             CCceEEEECCCHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCCc
Q 019978           42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGR   83 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~a-lA~~La~~~G~~~~~~~V~-l~~r~~~   83 (333)
                      +++||+|||+|.+|.- +...+.+. .    ..++. +.+|+++
T Consensus         3 kkirvaIIGaG~ig~~~~~~~l~~~-~----~~el~avas~~~~   41 (157)
T d1nvmb1           3 QKLKVAIIGSGNIGTDLMIKVLRNA-K----YLEMGAMVGIDAA   41 (157)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHC-S----SEEEEEEECSCTT
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHhhC-C----cceEEEEEecchh
Confidence            4589999999999985 55555433 2    14555 4567764

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.55  E-value=0.0064  Score=47.17  Aligned_cols=88  Identities=20%  Similarity=0.222  Sum_probs=61.2

Q ss_pred             ceEEEECC----CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhh
Q 019978           44 LRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA  119 (333)
Q Consensus        44 ~kI~IIGa----G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~  119 (333)
                      ++|+|||+    |.+|..+...|.+. |     ++|..+..+.+.+.                                 
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~-g-----~~V~pVnP~~~~i~---------------------------------   42 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSK-G-----FEVLPVNPNYDEIE---------------------------------   42 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHT-T-----CEEEEECTTCSEET---------------------------------
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHC-C-----CEEEEEcccccccc---------------------------------
Confidence            68999995    78999999999998 8     77766654432210                                 


Q ss_pred             hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeec
Q 019978          120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG  199 (333)
Q Consensus       120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kG  199 (333)
                                                 .+.+..++.+.-+..|++++++|+..+.+++++....      +...+.++.|
T Consensus        43 ---------------------------G~~~y~sl~~lp~~~D~vvi~vp~~~~~~~l~~~~~~------g~k~v~~~~g   89 (116)
T d1y81a1          43 ---------------------------GLKCYRSVRELPKDVDVIVFVVPPKVGLQVAKEAVEA------GFKKLWFQPG   89 (116)
T ss_dssp             ---------------------------TEECBSSGGGSCTTCCEEEECSCHHHHHHHHHHHHHT------TCCEEEECTT
T ss_pred             ---------------------------CccccccchhccccceEEEEEeCHHHHHHHHHHHHhc------CCceEEeccc
Confidence                                       2233344544334679999999999999999987652      2334556666


Q ss_pred             Cccc
Q 019978          200 VEAE  203 (333)
Q Consensus       200 i~~~  203 (333)
                      ...+
T Consensus        90 ~~~~   93 (116)
T d1y81a1          90 AESE   93 (116)
T ss_dssp             SCCH
T ss_pred             hhhH
Confidence            5543

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.48  E-value=0.0025  Score=50.16  Aligned_cols=81  Identities=15%  Similarity=0.139  Sum_probs=53.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG  122 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~  122 (333)
                      -||+|+|||.+|.+++..+..+.+     +++. ++|-+++...                         ..+.++     
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~-----~~iv~fiDdd~~k~G-------------------------~~I~Gi-----   48 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGES-----FELRGFFDVDPEKVG-------------------------RPVRGG-----   48 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSS-----EEEEEEEESCTTTTT-------------------------CEETTE-----
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCC-----cEEEEEEeCchHhcC-------------------------CEECCE-----
Confidence            489999999999999987643313     5654 5676665321                         122221     


Q ss_pred             CCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCchhHHHHHHHHHhh
Q 019978          123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISRY  183 (333)
Q Consensus       123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~-~~aDlIIlaVps~~~~~vl~~i~~~  183 (333)
                                              ++...+++++.. +..++.++++|+...+++++.+..+
T Consensus        49 ------------------------~V~~~~~l~~~~~~~i~iai~~i~~~~~~~I~d~l~~~   86 (126)
T d2dt5a2          49 ------------------------VIEHVDLLPQRVPGRIEIALLTVPREAAQKAADLLVAA   86 (126)
T ss_dssp             ------------------------EEEEGGGHHHHSTTTCCEEEECSCHHHHHHHHHHHHHH
T ss_pred             ------------------------EEecHHHHHHHHhhcccEEEEeCCHHHHHHHHHHHHHc
Confidence                                    233345555433 3578899999999999988887653

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=96.47  E-value=0.0055  Score=52.91  Aligned_cols=52  Identities=15%  Similarity=0.151  Sum_probs=32.8

Q ss_pred             eEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHhhh---hccCCCCEEEEeeecCccc
Q 019978          148 LKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYW---KERITVPVIISLAKGVEAE  203 (333)
Q Consensus       148 i~~t~d~~ea~~--~aDlIIlaVps~~~~~vl~~i~~~l---~~~~~~~~Ivs~~kGi~~~  203 (333)
                      ....++.++.+.  +.|+|++++|.....+........-   ..   ++. |.+-|-+...
T Consensus        71 ~~~~~~~~~l~~~~~iD~V~i~tp~~~h~~~~~~al~aG~~~~~---~k~-V~~EKPla~~  127 (237)
T d2nvwa1          71 ATGFDSLESFAQYKDIDMIVVSVKVPEHYEVVKNILEHSSQNLN---LRY-LYVEWALAAS  127 (237)
T ss_dssp             CEEESCHHHHHHCTTCSEEEECSCHHHHHHHHHHHHHHSSSCSS---CCE-EEEESSSSSS
T ss_pred             ceeecchhhcccccccceeeccCCCcchhhHHHHHHHhcccccC---Cce-EEEeccccCC
Confidence            445578887764  5789999999987777666554421   11   233 3466666543

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.45  E-value=0.0032  Score=57.33  Aligned_cols=43  Identities=7%  Similarity=0.096  Sum_probs=34.3

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      .+..+++|||+|..+..-+..+.....    -.+|.+|+|+++++++
T Consensus       123 ~~~~~l~iiGaG~QA~~~~~al~~~~~----i~~i~v~~r~~e~~~~  165 (320)
T d1omoa_         123 KNSSVFGFIGCGTQAYFQLEALRRVFD----IGEVKAYDVREKAAKK  165 (320)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSC----CCEEEEECSSHHHHHH
T ss_pred             CCccEEEEecCcccHHHHHHHHHHHhh----hhhcccccCCHHHHHH
Confidence            456799999999999999998876521    1589999999886643

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.0019  Score=54.19  Aligned_cols=41  Identities=17%  Similarity=0.208  Sum_probs=36.1

Q ss_pred             cCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           38 KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        38 ~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      .+...++||+|||+|.-|..-|..|+++ |     |+|++++++++.
T Consensus        38 ~~~~~~k~V~IIGaGPAGL~AA~~la~~-G-----~~Vtl~E~~~~~   78 (179)
T d1ps9a3          38 LPAVQKKNLAVVGAGPAGLAFAINAAAR-G-----HQVTLFDAHSEI   78 (179)
T ss_dssp             CSCSSCCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEEESSSSS
T ss_pred             CCCCCCcEEEEECccHHHHHHHHHHHhh-c-----cceEEEeccCcc
Confidence            3445568999999999999999999999 8     999999998754

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.41  E-value=0.0035  Score=48.85  Aligned_cols=50  Identities=22%  Similarity=0.361  Sum_probs=39.3

Q ss_pred             hHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           30 DELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        30 ~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +..+++..... ..+||+|||+|.+|.-+|..|++. |     .+|+++.+.+..+.
T Consensus        18 ~Da~~l~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~-g-----~~Vtli~~~~~~l~   67 (121)
T d1d7ya2          18 EDARRIQAGLR-PQSRLLIVGGGVIGLELAATARTA-G-----VHVSLVETQPRLMS   67 (121)
T ss_dssp             HHHHHHHHHCC-TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSSSTTT
T ss_pred             HHHHHHHHhhh-cCCeEEEECcchhHHHHHHHhhcc-c-----ceEEEEeecccccc
Confidence            33444444433 237999999999999999999998 8     99999999986554

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.0023  Score=53.21  Aligned_cols=40  Identities=23%  Similarity=0.264  Sum_probs=34.7

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      .++|.|+|+|..|.+++..|.+. |.    .++++++|+++.+++
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~-g~----~~i~i~nR~~~~~~~   57 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIE-GL----KEIKLFNRRDEFFDK   57 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TC----SEEEEEECSSTTHHH
T ss_pred             CCEEEEECCcHHHHHHHHHHhhc-CC----ceEeeeccchHHHHH
Confidence            37999999999999999999998 72    589999999987764

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.37  E-value=0.0056  Score=51.12  Aligned_cols=100  Identities=15%  Similarity=0.182  Sum_probs=59.8

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhh
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL  121 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~  121 (333)
                      |+||+|+|| |..|.-|.+.|+++ -    +.++.....+...-+.+         .+             ..+...   
T Consensus         1 MikVaIvGATGyvG~eLirlL~~H-P----~~ei~~l~s~~~aG~~i---------~~-------------~~p~~~---   50 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNH-P----EAKITYLSSRTYAGKKL---------EE-------------IFPSTL---   50 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHC-T----TEEEEEEECSTTTTSBH---------HH-------------HCGGGC---
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhC-C----CceEEEeeccccCCCcc---------cc-------------cCchhh---
Confidence            689999997 99999999999876 3    25665554332211111         11             011100   


Q ss_pred             cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCc
Q 019978          122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE  201 (333)
Q Consensus       122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~  201 (333)
                      .+                      ..+ ...+.++..+++|++++|+|...-.+...+    . .   +..||.++.-+-
T Consensus        51 ~~----------------------~~~-~~~~~~~~~~~~dvvf~a~p~~~s~~~~~~----~-~---~~~VIDlSadfR   99 (176)
T d1vkna1          51 EN----------------------SIL-SEFDPEKVSKNCDVLFTALPAGASYDLVRE----L-K---GVKIIDLGADFR   99 (176)
T ss_dssp             CC----------------------CBC-BCCCHHHHHHHCSEEEECCSTTHHHHHHTT----C-C---SCEEEESSSTTT
T ss_pred             cc----------------------ccc-cccCHhHhccccceEEEccccHHHHHHHHh----h-c---cceEEecCcccc
Confidence            00                      011 124555556789999999999876555432    2 2   578888876666


Q ss_pred             cc
Q 019978          202 AE  203 (333)
Q Consensus       202 ~~  203 (333)
                      ..
T Consensus       100 l~  101 (176)
T d1vkna1         100 FD  101 (176)
T ss_dssp             CS
T ss_pred             cc
Confidence            53

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.36  E-value=0.0092  Score=49.33  Aligned_cols=49  Identities=12%  Similarity=0.219  Sum_probs=34.1

Q ss_pred             eEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       148 i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                      .....+......+.|++|+|+|...-.+....+..   .   +..+|.++.-+-.
T Consensus        60 ~~~~~~~~~~~~~~dvvf~alp~~~s~~~~~~~~~---~---~~~vIDlSadfRl  108 (179)
T d2g17a1          60 LQPMSDVRDFSADVDVVFLATAHEVSHDLAPQFLQ---A---GCVVFDLSGAFRV  108 (179)
T ss_dssp             EEEESCGGGTCTTCCEEEECSCHHHHHHHHHHHHH---T---TCEEEECSSTTSS
T ss_pred             cccchhhhhhhcccceeeccccchhHHHHhhhhhh---c---Cceeecccccccc
Confidence            34445555455689999999999888777776653   3   5778887755544

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.36  E-value=0.0039  Score=51.04  Aligned_cols=26  Identities=35%  Similarity=0.414  Sum_probs=21.9

Q ss_pred             CCCCceEEEECCCHHHHHHHHHHHHh
Q 019978           40 EGDPLRIVGVGAGAWGSVFTAMLQDS   65 (333)
Q Consensus        40 ~~~~~kI~IIGaG~mG~alA~~La~~   65 (333)
                      +...+||+|||+|.||...+..+.+.
T Consensus         4 ~~~k~kv~iIG~G~~g~~h~~~l~~~   29 (172)
T d1lc0a1           4 NSGKFGVVVVGVGRAGSVRLRDLKDP   29 (172)
T ss_dssp             CCCSEEEEEECCSHHHHHHHHHHTSH
T ss_pred             CCCCcEEEEEcCCHHHHHHHHHHHhC
Confidence            45678999999999999988887654

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.33  E-value=0.0015  Score=53.61  Aligned_cols=37  Identities=22%  Similarity=0.241  Sum_probs=32.8

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcc
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRS   84 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~   84 (333)
                      ..+||+|||+|..|...|..|++. |     + +|+++.+.+..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~-G-----~~~V~v~E~~~~~   40 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARL-G-----YSDITIFEKQEYV   40 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHT-T-----CCCEEEEESSSSC
T ss_pred             CCCEEEEECChHHHHHHHHHHHHC-C-----CCeEEEEEecCcc
Confidence            457999999999999999999999 8     7 59999998753

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.28  E-value=0.016  Score=44.09  Aligned_cols=34  Identities=15%  Similarity=0.087  Sum_probs=31.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +||.|||+|..|..-+..|.+. |     .+|++++....
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~-g-----a~v~v~~~~~~   46 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEA-G-----ARLTVNALTFI   46 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----BEEEEEESSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccCC
Confidence            6999999999999999999999 8     89999987664

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.26  E-value=0.0034  Score=48.17  Aligned_cols=38  Identities=21%  Similarity=0.338  Sum_probs=34.3

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      -+++|+|||+|.+|.-+|..|++. |     .+|+++.|.+..+
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~-G-----~~Vtlve~~~~il   58 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANF-G-----TKVTILEGAGEIL   58 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSSSSS
T ss_pred             cCCeEEEECCCccceeeeeeeccc-c-----cEEEEEEecceec
Confidence            457999999999999999999998 8     9999999988654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.13  E-value=0.0032  Score=49.09  Aligned_cols=39  Identities=15%  Similarity=0.181  Sum_probs=34.6

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      -++|++|||+|.+|.=+|..|++. |     .+|+++.+.+..+.
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~l-G-----~~Vtii~~~~~~l~   60 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRL-G-----SKVTVVEFQPQIGA   60 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSSSSS
T ss_pred             CCCeEEEECCCchHHHHHHHHHhh-C-----cceeEEEeccccch
Confidence            457999999999999999999998 8     99999999886543

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.03  E-value=0.0081  Score=46.66  Aligned_cols=39  Identities=15%  Similarity=0.239  Sum_probs=34.2

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ..++|+|||+|.+|.-+|..|++. |     ++|+++.+.+..+.
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~-g-----~~Vtlie~~~~~l~   67 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKA-G-----KKVTVIDILDRPLG   67 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSSSTTT
T ss_pred             CCCEEEEECChHHHHHHHHHhhcc-c-----eEEEEEEecCcccc
Confidence            357999999999999999999999 8     99999999875443

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=96.01  E-value=0.0069  Score=48.26  Aligned_cols=91  Identities=16%  Similarity=0.141  Sum_probs=65.0

Q ss_pred             CceEEEECC----CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhh
Q 019978           43 PLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE  118 (333)
Q Consensus        43 ~~kI~IIGa----G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~  118 (333)
                      +++|+|||+    +.+|......|.+. |     +++.+|..++.. +                          ...   
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~-g-----~~~~~v~~~~~~-~--------------------------~i~---   56 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQ-G-----YRVLPVNPRFQG-E--------------------------ELF---   56 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHT-T-----CEEEEECGGGTT-S--------------------------EET---
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcC-C-----CCceEEEecccc-c--------------------------eee---
Confidence            458999997    89999999999998 8     899888765421 0                          000   


Q ss_pred             hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeee
Q 019978          119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK  198 (333)
Q Consensus       119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~k  198 (333)
                                                  ...+..++.+.-+..|++++++|+..+.+++++.... .     ...+.++.
T Consensus        57 ----------------------------g~~~~~~l~~i~~~iD~v~v~~p~~~v~~~v~~~~~~-g-----~k~i~~q~  102 (136)
T d1iuka_          57 ----------------------------GEEAVASLLDLKEPVDILDVFRPPSALMDHLPEVLAL-R-----PGLVWLQS  102 (136)
T ss_dssp             ----------------------------TEECBSSGGGCCSCCSEEEECSCHHHHTTTHHHHHHH-C-----CSCEEECT
T ss_pred             ----------------------------ceecccchhhccCCCceEEEeccHHHHHHHHHHHHhh-C-----CCeEEEec
Confidence                                        2334455555445689999999999999999998753 2     22345777


Q ss_pred             cCccc
Q 019978          199 GVEAE  203 (333)
Q Consensus       199 Gi~~~  203 (333)
                      |+..+
T Consensus       103 G~~~~  107 (136)
T d1iuka_         103 GIRHP  107 (136)
T ss_dssp             TCCCH
T ss_pred             CccCH
Confidence            87654

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.00  E-value=0.015  Score=46.42  Aligned_cols=64  Identities=19%  Similarity=0.045  Sum_probs=43.5

Q ss_pred             cCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcccccCCccCCCHHHHHHhHhCCCCCcEEEEcCCCchH
Q 019978          159 WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS  238 (333)
Q Consensus       159 ~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~~~~~~~~~~~se~i~~~lg~~~~~~~vl~GP~~a~  238 (333)
                      .++|+||=.+.+..+.+.++.....      +..+|..|.|+..+..         +.+++..- ....+.++..|||..
T Consensus        43 ~~~DvvIDFS~p~~~~~~~~~~~~~------~~~~ViGTTG~~~~~~---------~~l~~~~~-~~~~ipil~apNfSl  106 (135)
T d1yl7a1          43 GNTEVVIDFTHPDVVMGNLEFLIDN------GIHAVVGTTGFTAERF---------QQVESWLV-AKPNTSVLIAPNFTS  106 (135)
T ss_dssp             TTCSEEEECCCTTTHHHHHHHHHHT------TCEEEECCCCCCHHHH---------HHHHHHHH-SCTTCEEEECSCCGG
T ss_pred             ccCCEEEEcccHHHHHHHHHHHHhc------CCCEEEeccccchhHH---------HHHHHHHH-hcCCCCEEEcCCccH
Confidence            4689999999999888888876642      5678888889886521         23444310 012355788999965

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.99  E-value=0.0047  Score=51.31  Aligned_cols=43  Identities=19%  Similarity=0.253  Sum_probs=35.8

Q ss_pred             CCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        39 ~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +...+.||.|||+|..|..-+.....- |     -+|+++|.+.+++++
T Consensus        28 ~gv~pa~V~ViGaGvaG~~A~~~A~~l-G-----A~V~~~D~~~~~l~~   70 (168)
T d1pjca1          28 PGVKPGKVVILGGGVVGTEAAKMAVGL-G-----AQVQIFDINVERLSY   70 (168)
T ss_dssp             TTBCCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CCCCCcEEEEECCChHHHHHHHHHhhC-C-----CEEEEEeCcHHHHHH
Confidence            345578999999999999988887776 8     899999999876543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.98  E-value=0.011  Score=47.07  Aligned_cols=36  Identities=8%  Similarity=-0.002  Sum_probs=32.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      -+|.|+|.|.+|..++..|.+. |     ++|++++.+++..
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~-~-----~~v~vId~d~~~~   39 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQR-G-----QNVTVISNLPEDD   39 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECCCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-C-----CCEEEEeccchhH
Confidence            3699999999999999999998 7     8999999988643

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.97  E-value=0.0042  Score=47.79  Aligned_cols=39  Identities=21%  Similarity=0.305  Sum_probs=34.4

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      -++||+|||+|..|.-+|..|++. |     ++|+++.|.+..+.
T Consensus        20 ~p~~vvIiGgG~ig~E~A~~l~~~-G-----~~Vtlve~~~~~l~   58 (116)
T d1gesa2          20 LPERVAVVGAGYIGVELGGVINGL-G-----AKTHLFEMFDAPLP   58 (116)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSSSST
T ss_pred             CCCEEEEECCChhhHHHHHHhhcc-c-----cEEEEEeecchhhh
Confidence            357999999999999999999998 8     99999999886543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.95  E-value=0.0051  Score=47.57  Aligned_cols=38  Identities=21%  Similarity=0.292  Sum_probs=34.0

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      +++||+|||+|..|.-+|..|+.. |     .+|+++.|.+..+
T Consensus        21 ~p~~v~IiGgG~iG~E~A~~l~~~-g-----~~Vtlv~~~~~il   58 (117)
T d1onfa2          21 ESKKIGIVGSGYIAVELINVIKRL-G-----IDSYIFARGNRIL   58 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSSSSC
T ss_pred             CCCEEEEECCchHHHHHHHHHHhc-c-----ccceeeehhcccc
Confidence            367999999999999999999988 8     9999999987544

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.94  E-value=0.0033  Score=52.86  Aligned_cols=33  Identities=24%  Similarity=0.402  Sum_probs=31.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      +||+|||+|.-|.+-|..|++. |     ++|+++++++
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~-G-----~~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIH-G-----LNVTVFEAEG   34 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT-S-----CEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-C-----CCEEEEeCCC
Confidence            6999999999999999999999 8     9999999865

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.91  E-value=0.00072  Score=56.99  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=22.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYG   67 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G   67 (333)
                      |||+|||||.+|.+.|..|+++ |
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~-G   23 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHER-Y   23 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-H
T ss_pred             CEEEEECchHHHHHHHHHHHHC-C
Confidence            8999999999999999999999 7

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.91  E-value=0.0042  Score=52.89  Aligned_cols=37  Identities=22%  Similarity=0.326  Sum_probs=32.5

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      +++|+|||+|.-|.++|..|++. |.    ++|+++.+.++.
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~-Gi----~~V~V~Er~~~~   37 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQA-GI----GKVTLLESSSEI   37 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TC----SEEEEEESSSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC-CC----CeEEEEeCCCCC
Confidence            58999999999999999999999 82    389999998753

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.90  E-value=0.0092  Score=46.99  Aligned_cols=52  Identities=17%  Similarity=0.273  Sum_probs=40.3

Q ss_pred             hhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        29 ~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +++..++..... ...||+|||+|..|.-+|..|++. |     .+|+++.+.+..+.+
T Consensus        22 ~~d~~~l~~~~~-~~k~v~VIGgG~iG~E~A~~l~~~-g-----~~Vtvie~~~~~l~~   73 (133)
T d1q1ra2          22 LEDAECIRRQLI-ADNRLVVIGGGYIGLEVAATAIKA-N-----MHVTLLDTAARVLER   73 (133)
T ss_dssp             HHHHHHHHHTCC-TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSSTTTT
T ss_pred             HHHHHHHHHhhc-cCCEEEEECCchHHHHHHHHHHhh-C-----cceeeeeeccccccc
Confidence            344444544433 347999999999999999999998 8     999999998865543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.87  E-value=0.0053  Score=47.78  Aligned_cols=35  Identities=20%  Similarity=0.165  Sum_probs=31.5

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      -+.|++|||+|.+|.=+|..|++- |     .+|+++.|++
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~l-G-----~~Vtii~~~~   53 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGI-G-----LDVTVMVRSI   53 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSS
T ss_pred             CCCeEEEECCCccHHHHHHHHhhc-C-----CeEEEEEech
Confidence            346999999999999999999998 8     9999998864

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=95.77  E-value=0.0038  Score=53.78  Aligned_cols=32  Identities=19%  Similarity=0.261  Sum_probs=29.9

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .|+|||+|.+|++.|..|++. |     ++|+++++++
T Consensus         6 DvvIIGaGi~Gls~A~~La~~-G-----~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKE-N-----KNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence            399999999999999999999 8     9999999865

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.75  E-value=0.0048  Score=55.53  Aligned_cols=35  Identities=29%  Similarity=0.397  Sum_probs=32.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .+||+|||||.-|.+.|..|+++ |     ++|+++..+..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~-G-----~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEK-G-----HQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhC-C-----CCEEEEECCCC
Confidence            47999999999999999999999 8     99999998874

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.69  E-value=0.0052  Score=55.11  Aligned_cols=39  Identities=23%  Similarity=0.240  Sum_probs=32.7

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ..++||+|||||.-|.+.|..|++. |.   +++|+++.++.+
T Consensus         2 ~~~KrVaIIGaG~sGl~~A~~L~~~-~~---~~~v~vfEk~~~   40 (335)
T d2gv8a1           2 PTIRKIAIIGAGPSGLVTAKALLAE-KA---FDQVTLFERRGS   40 (335)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTT-TC---CSEEEEECSSSS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHh-CC---CCCEEEEECCCC
Confidence            4578999999999999999999876 51   158999999875

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.63  E-value=0.0095  Score=45.96  Aligned_cols=39  Identities=15%  Similarity=0.231  Sum_probs=34.6

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      -+.+|+|||+|.+|.=+|..|++. |     .+|+++.+.+..+.
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~-G-----~~Vtiv~~~~~ll~   59 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARL-G-----AEVTVLEAMDKFLP   59 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSSSSST
T ss_pred             CCCeEEEECCChHHHHHHHHHHHc-C-----CceEEEEeecccCC
Confidence            457999999999999999999998 8     99999998876543

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0088  Score=46.51  Aligned_cols=37  Identities=27%  Similarity=0.307  Sum_probs=33.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      ++||+|||+|.+|.-+|..|++. |     .+|+++.|.+..+
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~-G-----~~Vtlv~~~~~~l   58 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSAL-G-----SKTSLMIRHDKVL   58 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSSSC
T ss_pred             CCEEEEEcCCccHHHHHHHHhcC-C-----cEEEEEeeccccc
Confidence            47999999999999999999998 8     9999999987554

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.59  E-value=0.0047  Score=53.67  Aligned_cols=33  Identities=24%  Similarity=0.401  Sum_probs=31.0

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +|+|||+|..|.++|..|++. |     ++|+++++.++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~-G-----~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKA-G-----IDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHH-T-----CCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHC-C-----CCEEEEeCCCC
Confidence            799999999999999999999 8     99999999864

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0072  Score=51.21  Aligned_cols=37  Identities=16%  Similarity=0.249  Sum_probs=32.8

Q ss_pred             CCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        40 ~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .....||+|||+|.-|.+-|..|+++ |     ++|+++..+.
T Consensus         2 ~~~~~kViVIGaG~aGL~aA~~L~~~-G-----~~V~VlEa~~   38 (449)
T d2dw4a2           2 TKKTGKVIIIGSGVSGLAAARQLQSF-G-----MDVTLLEARD   38 (449)
T ss_dssp             SSCCCEEEEECCBHHHHHHHHHHHHT-T-----CEEEEECSSS
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCC
Confidence            34557999999999999999999999 8     9999998765

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.54  E-value=0.0056  Score=49.87  Aligned_cols=35  Identities=26%  Similarity=0.332  Sum_probs=30.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .||+|||+|.-|.+.|..|++. |+    ++|+++.+++.
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~-G~----~~V~vlE~~~~   35 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEA-GI----TDLLILEATDH   35 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHT-TC----CCEEEECSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhC-CC----CcEEEEECCCC
Confidence            3799999999999999999999 82    37999988753

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.54  E-value=0.011  Score=45.23  Aligned_cols=40  Identities=20%  Similarity=0.259  Sum_probs=35.2

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      -+.|++|||+|..|.-+|..|++. |     ++|+++.+.+..+..
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~-g-----~~Vtlve~~~~il~~   59 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKL-G-----AQVSVVEARERILPT   59 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSSSSSSTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhc-c-----cceEEEeeecccccc
Confidence            457999999999999999999999 8     999999998765543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.54  E-value=0.0057  Score=50.40  Aligned_cols=38  Identities=24%  Similarity=0.127  Sum_probs=32.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA   88 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~   88 (333)
                      ++|.|+|+|..+.+++..|.+.       .+|++++|+.++++.+
T Consensus        19 k~vlIlGaGG~arai~~aL~~~-------~~i~I~nR~~~ka~~l   56 (177)
T d1nvta1          19 KNIVIYGAGGAARAVAFELAKD-------NNIIIANRTVEKAEAL   56 (177)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSS-------SEEEEECSSHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHccc-------cceeeehhhhhHHHHH
Confidence            6999999999999999988655       4899999998876643

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.48  E-value=0.043  Score=45.48  Aligned_cols=35  Identities=9%  Similarity=0.065  Sum_probs=26.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEE-ecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~-~r~~   82 (333)
                      |-||+|.|.|.+|..+.+.+.++ .    +.+|..+ ++.+
T Consensus         1 MIKVaINGfGRIGR~v~Ral~~~-~----dievVaInd~~~   36 (178)
T d1b7go1           1 MVNVAVNGYGTIGKRVADAIIKQ-P----DMKLVGVAKTSP   36 (178)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTC-T----TEEEEEEECSSC
T ss_pred             CeEEEEECCCHHHHHHHHHHHhC-C----CCEEEEEECCCC
Confidence            46999999999999999999876 4    2565544 4443

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.44  E-value=0.014  Score=48.62  Aligned_cols=36  Identities=25%  Similarity=0.451  Sum_probs=28.0

Q ss_pred             CCCCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 019978           40 EGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRR   80 (333)
Q Consensus        40 ~~~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r   80 (333)
                      +.+.+||+|+|| |..|.-|.+.|.++ -    ..++.....
T Consensus         2 s~~kikVaIlGATGyvG~elirLL~~H-P----~~ei~~l~S   38 (183)
T d2cvoa1           2 SGEEVRIAVLGASGYTGAEIVRLLANH-P----QFRIKVMTA   38 (183)
T ss_dssp             CSSCEEEEEESCSSHHHHHHHHHHTTC-S----SEEEEEEEC
T ss_pred             CCCccEEEEECcccHHHHHHHHHHHhC-C----CceEEEEec
Confidence            456789999997 99999999999876 2    256665543

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.42  E-value=0.0062  Score=51.05  Aligned_cols=40  Identities=18%  Similarity=0.101  Sum_probs=33.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCC--CCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGY--LRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~--~~~~~~V~l~~r~~~   83 (333)
                      +.||+|||+|.-|.+-|..|++. |+  ...+++|++|++.+.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~-G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKA-ADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHH-HHHSTTCCEEEEEEESSSS
T ss_pred             CcEEEEECcCHHHHHHHHHHHHc-CCccccCCCceEEEecCCC
Confidence            57999999999999999999998 72  122258999999874

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.39  E-value=0.014  Score=44.58  Aligned_cols=38  Identities=13%  Similarity=0.108  Sum_probs=33.7

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      ..++|+|||+|.+|.=+|..|++. |     .+|+++.+.+...
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~-g-----~~vt~i~~~~~~l   58 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNAT-G-----RRTVMLVRTEPLK   58 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCTTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhc-c-----hhheEeeccchhh
Confidence            347999999999999999999988 8     8999999987544

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=95.32  E-value=0.028  Score=46.15  Aligned_cols=47  Identities=19%  Similarity=0.082  Sum_probs=36.8

Q ss_pred             hhHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        29 ~~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      +|.+.|-....-. -++++|+|.|-.|..+|..+..- |     -.|+++.++|
T Consensus        10 ~d~i~r~t~~~la-Gk~vvV~GYG~vGrG~A~~~rg~-G-----a~V~V~E~DP   56 (163)
T d1v8ba1          10 PDGLMRATDFLIS-GKIVVICGYGDVGKGCASSMKGL-G-----ARVYITEIDP   56 (163)
T ss_dssp             HHHHHHHHCCCCT-TSEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSCH
T ss_pred             HHHHHHHhCceec-CCEEEEecccccchhHHHHHHhC-C-----CEEEEEecCc
Confidence            3555554443222 26999999999999999999887 8     8999999998

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.16  E-value=0.01  Score=45.84  Aligned_cols=35  Identities=17%  Similarity=0.265  Sum_probs=32.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      ++|+|||+|..|.-+|..|++. |     ++|+++.+.+..
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~-g-----~~Vtlv~~~~~l   67 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEA-G-----YHVKLIHRGAMF   67 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHT-T-----CEEEEECSSSCC
T ss_pred             CcEEEECCcHHHHHHHHHhhcc-c-----ceEEEEeccccc
Confidence            5999999999999999999998 8     999999998754

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.06  E-value=0.011  Score=45.77  Aligned_cols=39  Identities=21%  Similarity=0.253  Sum_probs=35.0

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      -+.+++|||+|.+|.=+|..|++. |     .+|+++.|.+..+.
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~-G-----~~Vtvi~~~~~~l~   62 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRI-G-----SEVTVVEFASEIVP   62 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHH-T-----CEEEEECSSSSSST
T ss_pred             cCCeEEEEccchHHHHHHHHHHhc-C-----CeEEEEEEccccCc
Confidence            457999999999999999999998 8     99999999886653

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.04  E-value=0.016  Score=48.05  Aligned_cols=38  Identities=18%  Similarity=0.205  Sum_probs=34.1

Q ss_pred             ceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      ++|.|.| .|.+|.++|..|++. |     .+|++.+|+++++++
T Consensus        24 K~vlItGasgGIG~~ia~~la~~-G-----~~V~~~~r~~~~~~~   62 (191)
T d1luaa1          24 KKAVVLAGTGPVGMRSAALLAGE-G-----AEVVLCGRKLDKAQA   62 (191)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhh-c-----cchhhcccchHHHHH
Confidence            6899999 599999999999999 8     999999999887654

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.02  E-value=0.014  Score=48.02  Aligned_cols=36  Identities=11%  Similarity=0.154  Sum_probs=30.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      |||+|||+|..|.-+|..|.+. +   ++.+|+++.|++.
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~-~---~~~~V~v~~~~~~   36 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNL-H---PDAEIQWYEKGDF   36 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHH-C---TTSEEEEEESSSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhc-C---CCCeEEEEeCCCc
Confidence            8999999999999999999886 4   1268999988753

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.86  E-value=0.017  Score=44.77  Aligned_cols=35  Identities=11%  Similarity=0.024  Sum_probs=28.8

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      .|.|+|.|.+|..++..|.   |     ++|.+++.+++..+.
T Consensus         2 HivI~G~g~~g~~l~~~L~---~-----~~i~vi~~d~~~~~~   36 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR---G-----SEVFVLAEDENVRKK   36 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC---G-----GGEEEEESCTTHHHH
T ss_pred             EEEEECCCHHHHHHHHHHc---C-----CCCEEEEcchHHHHH
Confidence            5889999999999999983   3     678888998876543

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.79  E-value=0.012  Score=51.38  Aligned_cols=34  Identities=29%  Similarity=0.382  Sum_probs=29.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .+|.|||+|.+|.+.|..|++. |.    ++|+|++++.
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~-G~----~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTR-GW----NNITVLDQGP   35 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TC----CCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHc-CC----CcEEEEeCCC
Confidence            3799999999999999999998 71    3799999874

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.062  Score=43.27  Aligned_cols=37  Identities=16%  Similarity=0.242  Sum_probs=31.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~   86 (333)
                      .+|.|+|+|.+|...+..+... |     . +|+++++++++++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~-G-----~~~Vi~~d~~~~rl~   65 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAM-G-----AAQVVVTDLSATRLS   65 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CSEEEEEESCHHHHH
T ss_pred             CEEEEECCCccHHHHHHHHHHc-C-----CceEEeccCCHHHHH
Confidence            4899999999999999888777 7     5 7999999987654

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.76  E-value=0.018  Score=48.41  Aligned_cols=36  Identities=19%  Similarity=0.224  Sum_probs=30.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .||+|||+|.-|.+-|..|+++ +   .+++|+++++.+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~-~---~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKH-H---SRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-C---SSCEEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhc-C---CCCeEEEEeCCCC
Confidence            5999999999999999999876 3   1289999988874

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.74  E-value=0.013  Score=47.42  Aligned_cols=33  Identities=12%  Similarity=0.279  Sum_probs=30.5

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      -|.|||+|.-|.+.|..|+++ |     ++|.++.+++.
T Consensus         7 DviViGaG~~Gl~~A~~La~~-G-----~~V~vlE~~~~   39 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVD-G-----KKVLHIDKQDH   39 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHC-C-----CCEEEEcCCCC
Confidence            489999999999999999999 8     99999999863

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.72  E-value=0.019  Score=48.74  Aligned_cols=38  Identities=24%  Similarity=0.299  Sum_probs=34.0

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      ...+||+|||+|.-|.+.|..|++. |     ++|++++++.+.
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~-G-----~~v~l~E~~~~~   84 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMES-G-----YTVHLTDTAEKI   84 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSST
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHh-c-----cceeeEeecccc
Confidence            3457999999999999999999999 8     999999988754

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.68  E-value=0.023  Score=48.88  Aligned_cols=37  Identities=22%  Similarity=0.193  Sum_probs=32.9

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      ++||.|+|+ |.+|+.++..|.++ |     |+|++..|++...
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~-G-----~~V~~~~R~~~~~   40 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISL-G-----HPTYVLFRPEVVS   40 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT-T-----CCEEEECCSCCSS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC-C-----CEEEEEECCCccc
Confidence            579999996 99999999999999 8     9999999987543

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.65  E-value=0.012  Score=52.12  Aligned_cols=35  Identities=17%  Similarity=0.285  Sum_probs=31.9

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      |..|+|||||.-|.+.|..|++. |     ++|+++.++..
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~-g-----~~V~iiEk~~~   35 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKL-N-----KKVLVIEKRNH   35 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGG-T-----CCEEEECSSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhC-C-----CcEEEEECCCC
Confidence            45899999999999999999998 8     99999998764

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.59  E-value=0.15  Score=43.48  Aligned_cols=34  Identities=21%  Similarity=0.274  Sum_probs=30.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||.|+|+|.+|+.+|..|+.. |.    -+++++|.+.
T Consensus        31 ~~VliiG~GglGs~va~~La~~-Gv----g~i~lvD~D~   64 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASA-GV----GNLTLLDFDT   64 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TC----SEEEEECCCB
T ss_pred             CCEEEECCCHHHHHHHHHHHHc-CC----CeEEEECCcc
Confidence            6999999999999999999999 82    4789998765

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.51  E-value=0.09  Score=38.96  Aligned_cols=37  Identities=22%  Similarity=0.155  Sum_probs=32.2

Q ss_pred             CCCceEEEECCCHHH-HHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           41 GDPLRIVGVGAGAWG-SVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG-~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .+.+||-+||.|-.| +++|..|.+. |     ++|+.+|+...
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~-G-----~~VsGSD~~~~   43 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNE-G-----YQISGSDIADG   43 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHH-T-----CEEEEEESCCS
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhC-C-----CEEEEEeCCCC
Confidence            356899999998888 8889999999 9     99999998753

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.46  E-value=0.03  Score=43.51  Aligned_cols=39  Identities=13%  Similarity=0.198  Sum_probs=34.8

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      -+.+++|||+|.+|.=+|..|++. |     .+|+++.+.+..+.
T Consensus        25 ~p~~vvIiGgG~IG~E~A~~~~~~-G-----~~Vtive~~~~il~   63 (125)
T d1ojta2          25 VPGKLLIIGGGIIGLEMGTVYSTL-G-----SRLDVVEMMDGLMQ   63 (125)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHH-T-----CEEEEECSSSSSST
T ss_pred             cCCeEEEECCCHHHHHHHHHhhcC-C-----CEEEEEEeeccccc
Confidence            457999999999999999999998 8     99999999886554

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.39  E-value=0.034  Score=42.58  Aligned_cols=37  Identities=22%  Similarity=0.227  Sum_probs=32.2

Q ss_pred             CCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        41 ~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ....||+|+|+|-.|..++....+- |     ++|.+++.+++
T Consensus         9 ~~~~kigIlGgGQL~rMla~aA~~l-G-----~~v~v~d~~~~   45 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIECQRL-G-----VEVIAVDRYAD   45 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTT-T-----CEEEEEESSTT
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHC-C-----CEEEEEcCCCC
Confidence            3457999999999999999987666 8     99999999875

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.37  E-value=0.017  Score=47.45  Aligned_cols=36  Identities=17%  Similarity=0.193  Sum_probs=29.4

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEE--ecCCc
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIW--RRPGR   83 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~--~r~~~   83 (333)
                      +|++|.|.|+ |.+|+.++..|.++ |     ++|.++  .|+++
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~-g-----~~v~v~~~~R~~~   40 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEG-S-----DKFVAKGLVRSAQ   40 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHT-T-----TTCEEEEEESCHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHC-C-----CcEEEEEEcCCHH
Confidence            6789999995 99999999999998 7     765554  55554

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.35  E-value=0.022  Score=44.89  Aligned_cols=36  Identities=14%  Similarity=0.234  Sum_probs=30.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +||+|||+|..|..+|..|.+. +   ++.+|+++++++.
T Consensus         3 krivIvGgG~~G~e~A~~l~~~-~---~~~~Vtlie~~~~   38 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLA-D---PSIEVTLIEPNTD   38 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-C---TTSEEEEECSCSC
T ss_pred             CcEEEECccHHHHHHHHHHHHc-C---CCCcEEEEECCCc
Confidence            5999999999999999999987 6   1247899988774

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=94.22  E-value=0.019  Score=49.44  Aligned_cols=32  Identities=25%  Similarity=0.268  Sum_probs=29.4

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      -|+|||+|..|.+.|..|+++ |     ++|+++++..
T Consensus         5 DvvIIGaGi~Gls~A~~La~~-G-----~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQ-G-----VKTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence            389999999999999999999 8     9999999864

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.88  E-value=0.07  Score=44.51  Aligned_cols=41  Identities=17%  Similarity=0.230  Sum_probs=33.9

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA   88 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~   88 (333)
                      .+-||.|||+|..|..-+.....- |     -+|+++|.+++..+++
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~l-G-----A~V~v~D~~~~~~~~l   68 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRL-G-----AVVMATDVRAATKEQV   68 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCSTTHHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHc-C-----CEEEEEeccHHHHHHH
Confidence            356999999999999877776665 8     8999999999876654

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.86  E-value=0.068  Score=39.23  Aligned_cols=34  Identities=18%  Similarity=0.067  Sum_probs=29.7

Q ss_pred             ceEEEECCCHHHH-HHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~-alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      |||=+||-|-.|- ++|..|.+. |     +.|+..|+.+.
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~-G-----~~VsGSD~~~~   36 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSN-G-----NDVYGSNIEET   36 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEECSSCC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhC-C-----CeEEEEeCCCC
Confidence            8999999877776 889999999 8     99999998763

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.71  E-value=0.023  Score=48.44  Aligned_cols=33  Identities=21%  Similarity=0.249  Sum_probs=30.5

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      |||.|.|+ |.+|+.++..|.++ |     |+|+..+|++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~-g-----~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGK-N-----VEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTS-S-----EEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-C-----CEEEEeechh
Confidence            89999997 99999999999988 8     9999998875

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.69  E-value=0.098  Score=41.86  Aligned_cols=42  Identities=12%  Similarity=0.038  Sum_probs=30.5

Q ss_pred             HHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCccc
Q 019978          156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE  203 (333)
Q Consensus       156 ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~~  203 (333)
                      +...+.|+++++.|.........+...   .   +..||.++.-+-..
T Consensus        59 ~~~~~~d~~f~~~~~~~s~~~~~~~~~---~---~~~VIDlSsdfR~~  100 (154)
T d2gz1a1          59 TAFEGVDIALFSAGSSTSAKYAPYAVK---A---GVVVVDNTSYFRQN  100 (154)
T ss_dssp             TTTTTCSEEEECSCHHHHHHHHHHHHH---T---TCEEEECSSTTTTC
T ss_pred             hhhhhhhhhhhccCccchhhHHhhhcc---c---cceehhcChhhhcc
Confidence            346689999999998877766665443   3   67899887666543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.66  E-value=0.081  Score=42.51  Aligned_cols=38  Identities=24%  Similarity=0.265  Sum_probs=31.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      .+|.|+|+|.+|...++.+... |     .+|+.+++++++++.
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~-G-----~~vi~~~~~~~k~~~   66 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAM-G-----AETYVISRSSRKRED   66 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-T-----CEEEEEESSSTTHHH
T ss_pred             CEEEEECCCCcchhHHHHhhhc-c-----ccccccccchhHHHH
Confidence            5999999999999987776665 7     899999999887653

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.14  Score=43.03  Aligned_cols=37  Identities=19%  Similarity=0.298  Sum_probs=31.6

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      +||.|.|+ |.+|+.+...|.++ |.+   ++|++++|++..
T Consensus        15 k~IlItGaTG~iG~~l~~~Ll~~-g~~---~~v~~~~R~~~~   52 (232)
T d2bkaa1          15 KSVFILGASGETGRVLLKEILEQ-GLF---SKVTLIGRRKLT   52 (232)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHH-TCC---SEEEEEESSCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhC-CCC---CEEEEEecChhh
Confidence            58999997 99999999999998 732   489999998754

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.60  E-value=0.026  Score=48.00  Aligned_cols=37  Identities=24%  Similarity=0.216  Sum_probs=33.4

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      ++||.|+|+ |.+|+.++..|.++ |     |+|+..+|+....
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~-G-----~~V~~l~R~~~~~   40 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDL-G-----HPTFLLVRESTAS   40 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT-T-----CCEEEECCCCCTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHC-C-----CeEEEEECCCccc
Confidence            579999997 99999999999999 8     9999999987654

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.30  E-value=0.048  Score=48.72  Aligned_cols=36  Identities=22%  Similarity=0.210  Sum_probs=31.8

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ..|||.|.|+ |.+|+.++..|.++ |     |+|+.+++...
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~-g-----~~V~~~d~~~~   50 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHE-G-----HYVIASDWKKN   50 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-c-----CEEEEEeCCCc
Confidence            5689999995 99999999999999 8     99999987653

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=93.23  E-value=0.038  Score=46.45  Aligned_cols=34  Identities=12%  Similarity=0.261  Sum_probs=30.9

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      -|.|||+|.-|.+.|..|++. |     ++|.++++++..
T Consensus         4 DViIIGaG~aGl~aA~~la~~-G-----~~V~liEk~~~~   37 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEE-G-----ANVLLLDKGNKL   37 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCCCC
Confidence            489999999999999999999 8     999999988753

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.21  E-value=0.12  Score=48.31  Aligned_cols=34  Identities=24%  Similarity=0.358  Sum_probs=30.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||.|||+|.+|+.++..|+.. |.    .+++++|.+.
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~-Gv----g~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALS-GF----RQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTT-TC----CCEEEECCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHc-CC----CeEEEEECCC
Confidence            5999999999999999999998 82    3799998875

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.20  E-value=0.056  Score=38.89  Aligned_cols=35  Identities=11%  Similarity=0.153  Sum_probs=31.0

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +++|+|+|+|-.|..++....+= |     ++|.+++.+++
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~L-G-----~~v~vldp~~~   35 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPL-G-----IAVWPVGLDAE   35 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGG-T-----EEEEEECTTSC
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHc-C-----CEEEEEcCCCC
Confidence            47899999999999999997766 8     99999998775

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=93.19  E-value=0.033  Score=48.84  Aligned_cols=34  Identities=24%  Similarity=0.394  Sum_probs=29.7

Q ss_pred             eEEEECCCHHHHHHHHHHHH-----hcCCCCCCeeEEEEecCCcc
Q 019978           45 RIVGVGAGAWGSVFTAMLQD-----SYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~-----~~G~~~~~~~V~l~~r~~~~   84 (333)
                      -|+|||+|..|+++|..|++     . |     ++|+++++.+..
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~-G-----~~v~vlEr~~~~   47 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKP-D-----LKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHST-T-----CCEEEECSSSSC
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccC-C-----CcEEEEcCCCCC
Confidence            59999999999999999973     5 6     999999997654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.94  E-value=0.045  Score=47.13  Aligned_cols=31  Identities=29%  Similarity=0.455  Sum_probs=29.1

Q ss_pred             EEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        46 I~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      |+|||+|.-|.+-|..|++. |     ++|+++.++.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~-G-----~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDS-G-----LNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHT-T-----CCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCC
Confidence            79999999999999999999 8     9999998765

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=92.90  E-value=0.029  Score=45.89  Aligned_cols=38  Identities=24%  Similarity=0.046  Sum_probs=30.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+|+|+|+|.+|...++.+... |.    ..|+..++++++.+
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~-Ga----~~Vi~~d~~~~r~~   66 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLR-GA----GRIIGVGSRPICVE   66 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTT-TC----SCEEEECCCHHHHH
T ss_pred             CEEEEEcCCcchhhhhhhhhcc-cc----cccccccchhhhHH
Confidence            4899999999999988887766 71    36889999886544

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.88  E-value=0.08  Score=42.85  Aligned_cols=38  Identities=21%  Similarity=0.112  Sum_probs=29.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+|.|+|+|.+|.+.++.+... |.    ..|.+.++++++.+
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~-g~----~~v~~~~~~~~k~~   67 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVC-GA----SIIIAVDIVESRLE   67 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHH-TC----SEEEEEESCHHHHH
T ss_pred             CEEEEeCCCHHHhhhhhccccc-cc----ceeeeeccHHHHHH
Confidence            5899999999999999888777 71    34566677776543

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=92.87  E-value=0.048  Score=48.41  Aligned_cols=33  Identities=24%  Similarity=0.269  Sum_probs=30.1

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      |||.|.|+ |.+|+.++..|.++ |     ++|++++|-.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~-g-----~~V~~~d~~~   34 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQN-G-----HDVIILDNLC   34 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-c-----CEEEEEECCC
Confidence            89999996 99999999999999 8     9999998743

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=92.71  E-value=0.17  Score=42.43  Aligned_cols=44  Identities=20%  Similarity=0.299  Sum_probs=35.8

Q ss_pred             hccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           36 MGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        36 ~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      .|..+-+-++|+|-|.|++|..+|..|.+. |     .+|++++.+++.+
T Consensus        20 ~g~~~L~gk~v~IqG~G~VG~~~A~~L~~~-G-----akvvv~d~d~~~~   63 (201)
T d1c1da1          20 RGLGSLDGLTVLVQGLGAVGGSLASLAAEA-G-----AQLLVADTDTERV   63 (201)
T ss_dssp             TTCCCSTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHH
T ss_pred             hCCCCCCCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEecchHHHH
Confidence            343333447999999999999999999999 8     8999998886543

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=92.68  E-value=0.057  Score=48.00  Aligned_cols=37  Identities=22%  Similarity=0.241  Sum_probs=33.4

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      .++|+|+|+ |.+|+.++..|.+. |     ++|+...|++...
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~-G-----~~V~~l~R~~~~~   40 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAV-G-----HHVRAQVHSLKGL   40 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHT-T-----CCEEEEESCSCSH
T ss_pred             CCEEEEECCChHHHHHHHHHHHhC-C-----CeEEEEECCcchh
Confidence            478999996 99999999999999 8     9999999988653

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.61  E-value=0.046  Score=43.16  Aligned_cols=31  Identities=19%  Similarity=0.298  Sum_probs=27.3

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ||+|||+|..|.-+|..|++.       .+|+++++.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~~-------~~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQT-------YEVTVIDKEP   32 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT-------SEEEEECSSS
T ss_pred             eEEEECCcHHHHHHHHHHHcC-------CCEEEEeccc
Confidence            899999999999999999654       6899998765

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=92.54  E-value=0.055  Score=48.06  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=31.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ..|+|||||.-|.++|..|.+. |     .+|+++++.++
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~-G-----~~v~i~Ek~~~   41 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLREL-G-----RSVHVIETAGD   41 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred             CCEEEECccHHHHHHHHHHHhC-C-----CCEEEEEcCCC
Confidence            5799999999999999999998 8     89999999875

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=92.36  E-value=0.058  Score=45.89  Aligned_cols=36  Identities=22%  Similarity=0.251  Sum_probs=32.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      ..|.|||+|.-|...|..|++. |     ++|.++++++..-
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~-G-----~~V~vlEk~~~~G   40 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKL-G-----KSVTVFDNGKKIG   40 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSSSC
T ss_pred             CcEEEECcCHHHHHHHHHHHHC-C-----CcEEEEecCCCCC
Confidence            3699999999999999999999 8     9999999987543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.18  E-value=0.11  Score=41.40  Aligned_cols=37  Identities=14%  Similarity=0.178  Sum_probs=30.9

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+|.|+|+|.+|...++.+... |     .+|+..++++++++
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~-G-----~~Vi~~~~~~~~~~   65 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAM-G-----LHVAAIDIDDAKLE   65 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred             CEEEEeeccccHHHHHHHHHHc-C-----CccceecchhhHHH
Confidence            5899999999999877776655 7     89999999987654

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=92.11  E-value=0.052  Score=48.29  Aligned_cols=34  Identities=18%  Similarity=0.156  Sum_probs=29.5

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      .||||.|.|+ |.+|+.|+..|.++ |     ++|.++.++
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~-g-----~~v~v~~~d   35 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNN-H-----PDVHVTVLD   35 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHH-C-----TTCEEEEEE
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHC-C-----CCeEEEEEe
Confidence            3799999995 99999999999999 8     787777665

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.10  E-value=0.064  Score=46.31  Aligned_cols=38  Identities=18%  Similarity=0.220  Sum_probs=31.7

Q ss_pred             ceEEEE-CC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGV-GA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~II-Ga-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +||++| |+ +-+|.++|..|++. |     .+|.+.+|+++.+++
T Consensus         1 KKValITGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~l~~   40 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKD-G-----FAVAIADYNDATAKA   40 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            477554 75 67999999999999 8     999999999876654

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=92.10  E-value=0.31  Score=39.68  Aligned_cols=35  Identities=9%  Similarity=0.017  Sum_probs=26.3

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEE-EecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRI-WRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l-~~r~~   82 (333)
                      |.||+|-|.|.+|..+.+.+..+ +    +.+|.. .++.+
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~-~----di~vvaInd~~~   36 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQ-D----DMKVIGVSKTRP   36 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTS-S----SEEEEEEEESSC
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhC-C----CceEEEEecCCc
Confidence            57999999999999999988776 4    255543 34443

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=92.06  E-value=0.074  Score=42.53  Aligned_cols=37  Identities=22%  Similarity=0.323  Sum_probs=31.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+|.|+|+|.+|...++.+... |     .+|+.+++++++++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~-G-----a~vi~v~~~~~r~~   64 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAY-G-----AFVVCTARSPRRLE   64 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred             CEEEEEcccccchhhHhhHhhh-c-----ccccccchHHHHHH
Confidence            4899999999999988877666 7     89999999987654

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.98  E-value=0.057  Score=46.84  Aligned_cols=38  Identities=13%  Similarity=0.331  Sum_probs=31.4

Q ss_pred             eEEEE-C-CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhh
Q 019978           45 RIVGV-G-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA   88 (333)
Q Consensus        45 kI~II-G-aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~   88 (333)
                      |+++| | ++-+|.++|..|++. |     .+|.+.+|+++.++++
T Consensus         6 KvalVTGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~l~~~   45 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFARE-G-----AKVTITGRHAERLEET   45 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHH
Confidence            55544 6 489999999999999 8     9999999998776543

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.82  E-value=0.078  Score=42.17  Aligned_cols=34  Identities=26%  Similarity=0.098  Sum_probs=28.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .+|+|||+|..|.-+|..|.+. |     .+|+++.+.++
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~-g-----~~v~v~~~~~~   37 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRAS-G-----WEGNIRLVGDA   37 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CCSEEEEECSC
T ss_pred             CCEEEECCcHHHHHHHHHHHHc-C-----CceEEEEecCc
Confidence            5899999999999999999988 7     77777655543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=91.75  E-value=0.07  Score=46.21  Aligned_cols=38  Identities=18%  Similarity=0.259  Sum_probs=32.2

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +.+.|.|+ +-+|.++|..|++. |     .+|.+.+|+++.+++
T Consensus         6 K~alITGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~l~~   44 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAEE-G-----TAIALLDMNREALEK   44 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            46667787 77999999999999 8     999999999876654

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.67  E-value=0.076  Score=46.07  Aligned_cols=39  Identities=15%  Similarity=0.279  Sum_probs=34.0

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA   88 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~   88 (333)
                      +++.|.|+ +-+|.++|..|++. |     .+|.+.+|+++.++++
T Consensus        15 K~alITGassGIG~aiA~~la~~-G-----~~Vil~~r~~~~l~~~   54 (269)
T d1xu9a_          15 KKVIVTGASKGIGREMAYHLAKM-G-----AHVVVTARSKETLQKV   54 (269)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHH
Confidence            57888897 66999999999999 8     9999999999877654

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=91.66  E-value=0.23  Score=40.54  Aligned_cols=34  Identities=12%  Similarity=0.141  Sum_probs=25.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEE-EEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~-l~~r~~   82 (333)
                      +||+|.|.|.+|..+...+..+ .    +.+|. +.+..+
T Consensus         3 irIaINGfGRIGR~v~Ral~~~-~----dieiVaINd~~~   37 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQ-D----DMELIGITKTKP   37 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTC-T----TEEEEEEEESSC
T ss_pred             EEEEEECCCHHHHHHHHHHHhC-C----CceEEEEecCCC
Confidence            7999999999999999998765 3    25544 445444

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=91.61  E-value=0.045  Score=47.92  Aligned_cols=38  Identities=18%  Similarity=0.118  Sum_probs=31.5

Q ss_pred             ceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +.+.|.| +|.+|.++|..|++. |     .+|.+.+|+++.+++
T Consensus        26 K~alITGas~GIG~aiA~~la~~-G-----a~Vii~~r~~~~l~~   64 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSL-G-----AQCVIASRKMDVLKA   64 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHc-C-----CEEEEEECCHHHHHH
Confidence            3455556 699999999999999 8     999999999876654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=91.60  E-value=0.21  Score=39.78  Aligned_cols=37  Identities=14%  Similarity=0.215  Sum_probs=30.4

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+|.|+|+|.+|...++.+... |     .++++.++++++.+
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~-G-----a~~i~~~~~~~~~~   68 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAM-G-----AHVVAFTTSEAKRE   68 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSGGGHH
T ss_pred             CEEEEeccchHHHHHHHHhhcc-c-----ccchhhccchhHHH
Confidence            6899999999999888777666 7     78888888877543

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.57  E-value=0.086  Score=39.96  Aligned_cols=42  Identities=17%  Similarity=0.239  Sum_probs=32.2

Q ss_pred             CCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        42 ~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      -+.+|+|||+|.+|.=+|..|..- |.  .+.+|+++.+.+..+.
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l-~~--~~~~Vtli~~~~~iL~   60 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAY-KP--KDGQVTLCYRGEMILR   60 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHH-CC--TTCEEEEEESSSSSST
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhc-cc--CCcEEEEEeccchhhc
Confidence            357999999999999999887654 41  1158999999876553

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.57  E-value=0.091  Score=45.08  Aligned_cols=37  Identities=11%  Similarity=0.056  Sum_probs=30.9

Q ss_pred             eEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           45 RIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        45 kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      ++.|.| ++.+|.++|..|++. |     ++|.+.+|+++.+++
T Consensus         8 ~alITGas~GIG~aia~~la~~-G-----~~Vi~~~r~~~~l~~   45 (245)
T d2ag5a1           8 VIILTAAAQGIGQAAALAFARE-G-----AKVIATDINESKLQE   45 (245)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHGG
T ss_pred             EEEEeCCCCHHHHHHHHHHHHc-C-----CEEEEEeCCHHHHHH
Confidence            444555 599999999999999 8     999999999876654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=91.20  E-value=0.11  Score=45.71  Aligned_cols=37  Identities=22%  Similarity=0.294  Sum_probs=33.2

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +||.|.|+ |.+|+.++..|.++ |     ++|..++|++....
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~-g-----~~V~~~~r~~~~~~   46 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTM-G-----ATVKGYSLTAPTVP   46 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSCSSSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCCCccH
Confidence            79999995 99999999999999 8     99999999876543

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.17  E-value=0.11  Score=44.03  Aligned_cols=35  Identities=17%  Similarity=0.162  Sum_probs=28.8

Q ss_pred             ceEE-EECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           44 LRIV-GVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        44 ~kI~-IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      |||+ |.|+ +-+|.++|..|++. |     ++|.+.+|+++.
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~-G-----a~V~~~~~~~~~   37 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAA-G-----HQIVGIDIRDAE   37 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSSSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECChHH
Confidence            5665 5575 77999999999999 8     999999987643

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.08  E-value=0.65  Score=44.31  Aligned_cols=52  Identities=21%  Similarity=0.187  Sum_probs=39.0

Q ss_pred             HHhhhHHHHhhccCCCC---CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           26 EERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        26 ~~~~~~~~~~~~~~~~~---~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      |+|-|.--|+.|...-.   ..||.|||+|..|+-++..|+.. |.    ..++++|.+.
T Consensus         5 e~rYdRQlrlwG~~gQ~~L~~s~VlvvG~gglG~Ei~knLvl~-GV----g~itivD~d~   59 (529)
T d1yova1           5 EQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLP-GI----GSFTIIDGNQ   59 (529)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHCEEEECCCSHHHHHHHHHHHTT-TC----SEEEEECCSB
T ss_pred             hhhhhHHHHhhhHHHHHHHhCCCEEEECCCHHHHHHHHHHHHh-cC----CEEEEEcCCc
Confidence            45666666666643322   25999999999999999999998 82    4789997664

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.05  E-value=0.071  Score=46.44  Aligned_cols=38  Identities=13%  Similarity=0.288  Sum_probs=32.6

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +++.|.|+ +-+|.++|..|++. |     .+|.+.+|+++.+++
T Consensus         6 K~alVTGas~GIG~aia~~la~~-G-----a~V~l~~r~~~~l~~   44 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQE-G-----ANVTITGRSSERLEE   44 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEeCcCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            46667786 88999999999999 8     999999999877654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.96  E-value=0.13  Score=40.70  Aligned_cols=37  Identities=14%  Similarity=0.137  Sum_probs=30.7

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+|.|.|+|.+|...+..+... |     .+|...++++++.+
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~-g-----~~v~~~~~~~~r~~   65 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAM-G-----LNVVAVDIGDEKLE   65 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHH
T ss_pred             CEEEEeecccchhhhhHHHhcC-C-----CeEeccCCCHHHhh
Confidence            6999999999999877777666 7     88999998887654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=90.85  E-value=0.18  Score=37.94  Aligned_cols=41  Identities=17%  Similarity=0.193  Sum_probs=31.6

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +++|+|||+|..|.=+|..|++- +  ..+.+|+++.|.+..+.
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~-~--~~g~~Vtli~~~~~il~   58 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAY-K--ARGGQVDLAYRGDMILR   58 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHH-S--CTTCEEEEEESSSSSST
T ss_pred             CCeEEEECCChHHHHHHHHhHhh-c--ccccccceecccccccc
Confidence            57999999999999999887653 2  01179999999876543

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=90.83  E-value=0.14  Score=44.96  Aligned_cols=36  Identities=17%  Similarity=0.155  Sum_probs=30.0

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      |||.|.|+ |.+|+.++..|.++ |+    ++|+..++....
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~-g~----~~V~~ld~~~~~   37 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLRE-DH----YEVYGLDIGSDA   37 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHS-TT----CEEEEEESCCGG
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-CC----CEEEEEeCCCcc
Confidence            79999997 99999999999888 71    478888876543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.78  E-value=0.1  Score=45.05  Aligned_cols=38  Identities=16%  Similarity=0.163  Sum_probs=32.7

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +.+.|-|+ +-+|.++|..|++. |     .+|.+.+|+++.+++
T Consensus         7 K~alITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~~~~   45 (250)
T d1ydea1           7 KVVVVTGGGRGIGAGIVRAFVNS-G-----ARVVICDKDESGGRA   45 (250)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            46778886 89999999999999 8     999999999876554

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.69  E-value=0.2  Score=39.37  Aligned_cols=36  Identities=14%  Similarity=0.041  Sum_probs=30.7

Q ss_pred             ceEEEE--CCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           44 LRIVGV--GAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        44 ~kI~II--GaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      .++.|+  |+|.+|..+|..|++. |     ++|+++.+.+...
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~-G-----~~Vtlv~~~~~~~   77 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATA-G-----HEVTIVSGVHLAN   77 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHT-T-----CEEEEEESSCTTT
T ss_pred             CceEEEecCCChHHHHHHHHHHHc-C-----CeEEEEecCCccc
Confidence            456665  9999999999999999 8     9999999987543

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=90.68  E-value=0.11  Score=44.78  Aligned_cols=37  Identities=16%  Similarity=0.236  Sum_probs=30.8

Q ss_pred             eEE-EECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           45 RIV-GVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        45 kI~-IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      ||+ |-|+ +-+|.++|..|++. |     .+|.+++|+++.+++
T Consensus         3 KValITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~l~~   41 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKE-G-----LRVFVCARGEEGLRT   41 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            665 4465 77999999999999 8     899999999876654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=90.60  E-value=0.13  Score=41.71  Aligned_cols=37  Identities=16%  Similarity=0.177  Sum_probs=31.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCe-eEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~-~V~l~~r~~~~~~   86 (333)
                      .+|.|+|+|.+|...++.+... |     . +|++.++++++.+
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~-G-----a~~Vi~~~~~~~~~~   67 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSL-G-----AENVIVIAGSPNRLK   67 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T-----BSEEEEEESCHHHHH
T ss_pred             CEEEEECCCccchhheeccccc-c-----ccccccccccccccc
Confidence            5899999999999888887766 7     5 7999999987654

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.34  E-value=0.14  Score=43.90  Aligned_cols=38  Identities=21%  Similarity=0.257  Sum_probs=33.0

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +++.|.|+ +-+|.++|..|++. |     ++|.+.+|+++.+++
T Consensus         8 K~~lITGas~GIG~aia~~la~~-G-----~~V~~~~r~~~~l~~   46 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHAT-G-----ARVVAVSRTQADLDS   46 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHc-C-----CEEEEEECCHHHHHH
Confidence            57788896 88999999999999 8     999999999876554

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.34  E-value=0.15  Score=39.68  Aligned_cols=39  Identities=18%  Similarity=0.165  Sum_probs=31.2

Q ss_pred             CceEEEECCCHHHHHHHHHHHHh---cCCCCCCeeEEEEecCCcchh
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDS---YGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~---~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ..+|+|||+|..|.-+|..|++.   .|     .+|+++.+.+..+.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g-----~~Vt~i~~~~~~l~   78 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALG-----TEVIQLFPEKGNMG   78 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHT-----CEEEEECSSSSTTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcC-----CEEEEecccccCCc
Confidence            36999999999999999888642   25     79999998776543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=90.23  E-value=0.14  Score=44.26  Aligned_cols=38  Identities=16%  Similarity=0.206  Sum_probs=33.5

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +++.|.|+ +.+|.++|..|++. |     .+|.+.+|+++.+++
T Consensus         7 K~alITGas~GIG~aia~~la~~-G-----~~V~i~~r~~~~l~~   45 (258)
T d1ae1a_           7 TTALVTGGSKGIGYAIVEELAGL-G-----ARVYTCSRNEKELDE   45 (258)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            57889995 88999999999999 8     999999999876654

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=90.15  E-value=0.42  Score=40.90  Aligned_cols=45  Identities=16%  Similarity=0.175  Sum_probs=35.8

Q ss_pred             hhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           35 LMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        35 ~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      ..|..+-.-++|+|-|.|++|..+|..|.+. |     ..|+..+.+++.+
T Consensus        31 ~~g~~~l~g~~v~IqG~GnVG~~~a~~L~~~-G-----akvv~~d~~~~~~   75 (230)
T d1leha1          31 AFGSDSLEGLAVSVQGLGNVAKALCKKLNTE-G-----AKLVVTDVNKAAV   75 (230)
T ss_dssp             HHSSCCCTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHH
T ss_pred             hcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEeecccHHHH
Confidence            3344444458999999999999999999999 8     8888887776543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=89.96  E-value=0.14  Score=41.95  Aligned_cols=31  Identities=13%  Similarity=0.123  Sum_probs=28.5

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      -|+|||+|.-|...|..+++. |     .+|.++.++
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~-G-----~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMY-G-----QKCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-T-----CCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHC-C-----CEEEEEecc
Confidence            389999999999999999998 8     899999875

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.62  E-value=0.18  Score=41.24  Aligned_cols=33  Identities=21%  Similarity=0.259  Sum_probs=29.8

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      =|.|||+|.-|...|..+++. |     .+|.++++++.
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~-G-----~kV~vie~~~~   37 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQL-G-----FKTTCIEKRGA   37 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH-T-----CCEEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHC-C-----CcEEEEEecCC
Confidence            489999999999999999999 8     89999988653

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.42  E-value=0.19  Score=41.32  Aligned_cols=33  Identities=21%  Similarity=0.275  Sum_probs=29.9

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      -|+|||+|.-|...|..+++. |     .+|.+++..+.
T Consensus         7 DviVIG~GpAGl~aA~~aa~~-G-----~kV~lie~~~~   39 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQL-G-----FNTACVEKRGK   39 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHC-C-----CcEEEEEecCC
Confidence            489999999999999999999 8     99999997654

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.27  E-value=0.16  Score=41.27  Aligned_cols=34  Identities=12%  Similarity=0.038  Sum_probs=30.1

Q ss_pred             CceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      ..+|+|||+|.-|..-|..+++. |     .+|.++++..
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~-g-----~~v~vie~~~   38 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARA-E-----LKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT-T-----CCCEEECCSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHc-C-----CcEEEEEeec
Confidence            46999999999999999999998 8     8999997654

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=89.25  E-value=0.12  Score=41.43  Aligned_cols=31  Identities=29%  Similarity=0.220  Sum_probs=26.0

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      +|+|||+|..|.-+|..|.+. |     ++|++..+.
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~-g-----~~v~i~~~~   35 (183)
T d1d7ya1           5 PVVVLGAGLASVSFVAELRQA-G-----YQGLITVVG   35 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHH-T-----CCSCEEEEE
T ss_pred             CEEEECccHHHHHHHHHHHhc-C-----CceEEEEEe
Confidence            699999999999999999998 7     666555443

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.14  E-value=0.22  Score=38.61  Aligned_cols=45  Identities=18%  Similarity=0.276  Sum_probs=31.8

Q ss_pred             EecCHHHHhcCCCEEEEecCchhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          150 VVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       150 ~t~d~~ea~~~aDlIIlaVps~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                      ..+++.+++.++|+||++++.....++...    +.+   +..|+.+. |+-.
T Consensus        80 ~~~~~~e~i~~~D~ivi~t~h~~f~~l~~~----~~~---~~~I~D~~-~~~~  124 (136)
T d1mv8a3          80 LVSDLDEVVASSDVLVLGNGDELFVDLVNK----TPS---GKKLVDLV-GFMP  124 (136)
T ss_dssp             BCSCHHHHHHHCSEEEECSCCGGGHHHHHS----CCT---TCEEEESS-SCCS
T ss_pred             eehhhhhhhhhceEEEEEeCCHHHHHHHHH----hcC---CCEEEECC-CCCC
Confidence            457889999999999999998877654332    233   56777754 5443

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=89.01  E-value=0.19  Score=43.36  Aligned_cols=38  Identities=13%  Similarity=0.139  Sum_probs=31.4

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +.+.|.|+ +-+|.++|..|++. |     .+|.+.+|+++.+++
T Consensus         7 KvalITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~~~~   45 (268)
T d2bgka1           7 KVAIITGGAGGIGETTAKLFVRY-G-----AKVVIADIADDHGQK   45 (268)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            35556675 77999999999999 8     899999999876553

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.00  E-value=0.2  Score=42.79  Aligned_cols=38  Identities=24%  Similarity=0.235  Sum_probs=32.6

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +++.|.|+ +-+|.++|..|++. |     ++|.+.+|+++.+++
T Consensus         6 K~alITGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~l~~   44 (242)
T d1cyda_           6 LRALVTGAGKGIGRDTVKALHAS-G-----AKVVAVTRTNSDLVS   44 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            57778896 77999999999999 8     999999999876543

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=88.83  E-value=0.21  Score=42.38  Aligned_cols=35  Identities=14%  Similarity=0.062  Sum_probs=30.7

Q ss_pred             ceEEEECC-CH--HHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           44 LRIVGVGA-GA--WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        44 ~kI~IIGa-G~--mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      +++.|.|+ |.  +|.++|..|++. |     .+|.+.+|+.++
T Consensus         7 K~~lItGaag~~GIG~aiA~~la~~-G-----a~Vil~~~~~~~   44 (268)
T d2h7ma1           7 KRILVSGIITDSSIAFHIARVAQEQ-G-----AQLVLTGFDRLR   44 (268)
T ss_dssp             CEEEECCCSSTTCHHHHHHHHHHHT-T-----CEEEEEECSCHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHc-C-----CEEEEEeCChHH
Confidence            48899996 65  999999999999 8     999999998764

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=88.57  E-value=0.21  Score=42.57  Aligned_cols=37  Identities=19%  Similarity=0.223  Sum_probs=31.6

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +++.|.|+ +.+|.++|..|+++ |     ++|.+.+|+.+.++
T Consensus         6 K~alItGas~GIG~aia~~l~~~-G-----~~V~~~~r~~~~~~   43 (241)
T d2a4ka1           6 KTILVTGAASGIGRAALDLFARE-G-----ASLVAVDREERLLA   43 (241)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence            46777787 66999999999999 8     99999999987654

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.45  E-value=0.27  Score=41.36  Aligned_cols=34  Identities=18%  Similarity=0.294  Sum_probs=31.1

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      .||.|.|+ |-+|.++|..|+++ |     ++|.+.+|+++
T Consensus         3 gkVlITGas~GIG~aia~~l~~~-G-----~~V~~~~~~~~   37 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKN-G-----YTVLNIDLSAN   37 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHT-T-----EEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCch
Confidence            48999996 99999999999999 8     99999999875

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.41  E-value=0.18  Score=40.60  Aligned_cols=33  Identities=9%  Similarity=0.087  Sum_probs=29.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .+|+|||+|+-|..-|..+++. |     .+|+++++..
T Consensus         6 ~dVvIIGGGpaGl~AA~~~ar~-g-----~~v~iie~~~   38 (190)
T d1trba1           6 SKLLILGSGPAGYTAAVYAARA-N-----LQPVLITGME   38 (190)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTT-T-----CCCEEECCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHc-C-----CceEEEEeec
Confidence            4899999999999999999998 8     8999997654

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=88.40  E-value=0.28  Score=41.45  Aligned_cols=36  Identities=11%  Similarity=0.122  Sum_probs=30.2

Q ss_pred             ceEEEECCCH---HHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           44 LRIVGVGAGA---WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        44 ~kI~IIGaG~---mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      ++|.|.|++.   +|.++|..|++. |     ++|.+.+|+++..
T Consensus         6 K~~lITGass~~GIG~aiA~~l~~~-G-----~~V~i~~~~~~~~   44 (258)
T d1qsga_           6 KRILVTGVASKLSIAYGIAQAMHRE-G-----AELAFTYQNDKLK   44 (258)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHT-T-----CEEEEEESSTTTH
T ss_pred             CEEEEECCCCchhHHHHHHHHHHHc-C-----CEEEEEeCCHHHH
Confidence            4778888754   889999999999 8     9999999987543

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.30  E-value=0.22  Score=44.67  Aligned_cols=30  Identities=20%  Similarity=0.226  Sum_probs=28.2

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWR   79 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~   79 (333)
                      |||.|.|+ |.+|+.++..|.+. |     |+|+.+|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~-g-----~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKK-N-----YEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-c-----CEEEEEe
Confidence            79999996 99999999999999 8     9999987

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=88.28  E-value=0.21  Score=42.85  Aligned_cols=34  Identities=24%  Similarity=0.237  Sum_probs=29.8

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      -|+|||+|.-|.+.|..|+++.|     ++|+++++.+.
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G-----~~V~vlE~~~~   68 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPN-----VQVAIIEQSVS   68 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTT-----SCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHccC-----CeEEEEecCCC
Confidence            49999999999999999987327     99999998764

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.25  E-value=0.17  Score=40.57  Aligned_cols=37  Identities=16%  Similarity=0.105  Sum_probs=29.9

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+|.|.|+ |.+|.+..+.+... |     .+|....+++++.+
T Consensus        27 ~~VlI~ga~g~vG~~~iqla~~~-g-----~~vi~~~~~~~~~~   64 (183)
T d1pqwa_          27 ERVLIHSATGGVGMAAVSIAKMI-G-----ARIYTTAGSDAKRE   64 (183)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHH-T-----CEEEEEESSHHHHH
T ss_pred             CEEEEECCCCCcccccchhhccc-c-----ccceeeeccccccc
Confidence            58999886 99999988887766 7     88888888776543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.23  E-value=0.23  Score=42.48  Aligned_cols=38  Identities=8%  Similarity=0.000  Sum_probs=31.7

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +.+.|-|+ +-+|.++|..|++. |     ++|.+.+|+++.+++
T Consensus         7 K~alITGas~GIG~aia~~la~~-G-----~~V~~~~r~~~~~~~   45 (244)
T d1nffa_           7 KVALVSGGARGMGASHVRAMVAE-G-----AKVVFGDILDEEGKA   45 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            35566686 77999999999999 8     999999999876553

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=88.19  E-value=4.6  Score=31.68  Aligned_cols=36  Identities=17%  Similarity=0.261  Sum_probs=27.8

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      |++|+|+|+ |++|+.....+.++ -   ++++|....-..
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~-~---d~f~v~~lsa~~   38 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERN-L---DRYQVIALTANR   38 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHT-G---GGEEEEEEEESS
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcC-C---CCcEEEEEEeCC
Confidence            689999997 99999999998775 1   226777665554

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.17  E-value=0.23  Score=40.85  Aligned_cols=32  Identities=16%  Similarity=0.173  Sum_probs=29.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      ..|.|||+|.-|...|..+++. |     .+|.++.++
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~-G-----~~V~liE~~   37 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQL-G-----IPTVLVEGQ   37 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHH-T-----CCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecC
Confidence            3699999999999999999999 8     999999875

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=88.10  E-value=0.25  Score=40.96  Aligned_cols=33  Identities=24%  Similarity=0.285  Sum_probs=30.0

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      =|+|||+|.-|...|..+++. |     ++|.++.+.+.
T Consensus         8 DviIIG~GPaGlsaA~~aa~~-G-----~~V~viE~~~~   40 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADE-G-----LKVAIVERYKT   40 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeccCC
Confidence            489999999999999999999 8     99999988763

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.06  E-value=0.17  Score=44.05  Aligned_cols=38  Identities=13%  Similarity=0.264  Sum_probs=32.5

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +++.|-|+ +-+|.++|..|++. |     .+|.+.+|+++.+++
T Consensus         5 K~alITGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~l~~   43 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAKE-G-----AQVTITGRNEDRLEE   43 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            46777786 77999999999999 8     899999999876654

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.89  E-value=0.27  Score=42.95  Aligned_cols=32  Identities=28%  Similarity=0.254  Sum_probs=29.2

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      +||.|.|+ |.+|+.++..|.++ |     ++|+.+++.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~-g-----~~V~~~d~~   34 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMD-G-----HEVTVVDNF   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-c-----CEEEEEeCC
Confidence            69999996 99999999999999 8     999999863

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.77  E-value=0.37  Score=40.60  Aligned_cols=38  Identities=18%  Similarity=0.177  Sum_probs=32.1

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +.+.|.|+ +-+|.++|..|++. |     ++|.+.+|+++.+++
T Consensus         6 KvalITGas~GIG~aia~~la~~-G-----~~V~~~~r~~~~~~~   44 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQ-G-----ASAVLLDLPNSGGEA   44 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECTTSSHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEeCChHHHHH
Confidence            34567786 77999999999999 8     999999999887654

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=87.72  E-value=0.26  Score=42.78  Aligned_cols=38  Identities=8%  Similarity=0.231  Sum_probs=32.8

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +.+.|-|+ +-+|.++|..|++. |     .+|.+.+|+++.+++
T Consensus         6 K~alITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~l~~   44 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVAE-G-----AKVAVLDKSAERLAE   44 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            46777786 89999999999999 8     999999999876654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.65  E-value=0.27  Score=42.08  Aligned_cols=38  Identities=11%  Similarity=0.198  Sum_probs=31.6

Q ss_pred             eEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhh
Q 019978           45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA   88 (333)
Q Consensus        45 kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~   88 (333)
                      .|.|-|+ +-+|.++|..|++. |     .+|.+++|+++.++++
T Consensus         9 v~lITGas~GIG~~ia~~la~~-G-----~~V~l~~r~~~~l~~~   47 (244)
T d1yb1a_           9 IVLITGAGHGIGRLTAYEFAKL-K-----SKLVLWDINKHGLEET   47 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHH
Confidence            4555586 66999999999999 8     9999999999876643

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=87.61  E-value=0.24  Score=42.77  Aligned_cols=32  Identities=25%  Similarity=0.308  Sum_probs=29.8

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      -|.|||+|.-|.+.|..|++. |     .+|.++++.+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~-G-----~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDS-G-----AKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHC-C-----CcEEEEecCC
Confidence            599999999999999999999 8     8999998865

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.61  E-value=0.25  Score=42.24  Aligned_cols=38  Identities=16%  Similarity=0.322  Sum_probs=31.5

Q ss_pred             ceEEEE-CC-CHHHHHHHHHHHH---hcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGV-GA-GAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~II-Ga-G~mG~alA~~La~---~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      .||+|| |+ +-+|.++|..|++   + |     ++|.+.+|+++.+++
T Consensus         6 gKvalITGas~GIG~aiA~~lA~~~~~-G-----~~Vv~~~r~~~~l~~   48 (259)
T d1oaaa_           6 CAVCVLTGASRGFGRALAPQLARLLSP-G-----SVMLVSARSESMLRQ   48 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCT-T-----CEEEEEESCHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHhcccC-C-----CEEEEEECCHHHHHH
Confidence            388877 76 6799999999986   5 6     899999999877654

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=87.60  E-value=0.23  Score=43.97  Aligned_cols=32  Identities=22%  Similarity=0.203  Sum_probs=29.2

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      -|.|||+|.-|+.+|..|+++ |     ++|.+..+..
T Consensus         4 ~VIVVGsG~aG~v~A~rLaea-G-----~~VlvLEaG~   35 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEA-G-----VQTLMLEMGQ   35 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSC
T ss_pred             eEEEeCcCHHHHHHHHHHHHC-c-----CeEEEEecCC
Confidence            478999999999999999999 8     9999998853

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=87.60  E-value=0.25  Score=39.12  Aligned_cols=31  Identities=16%  Similarity=0.252  Sum_probs=27.7

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      -|.|||+|..|...|..+++. |     .+|.+++++
T Consensus         3 DViIIGgGpaGl~AAi~aar~-G-----~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARK-G-----IRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHc-C-----CeEEEEEEe
Confidence            489999999999999999998 8     899999764

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=87.50  E-value=0.21  Score=42.75  Aligned_cols=38  Identities=13%  Similarity=0.127  Sum_probs=31.6

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +.+.|.|+ +-+|.++|..|++. |     .+|.+.+|+++.+++
T Consensus         7 K~alVTGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~~~~   45 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEE-G-----AKVMITGRHSDVGEK   45 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            45666685 78999999999999 8     999999999876543

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=87.41  E-value=0.28  Score=42.07  Aligned_cols=38  Identities=13%  Similarity=0.103  Sum_probs=32.5

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +++.|.|+ +-+|.++|..|++. |     ++|.+.+|+++.+++
T Consensus         6 K~alVTGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~l~~   44 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVRE-G-----ARVAIADINLEAARA   44 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHT-T-----EEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            46677786 88999999999999 8     999999999876543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=87.40  E-value=0.2  Score=43.05  Aligned_cols=38  Identities=11%  Similarity=0.062  Sum_probs=31.4

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +.+.|.|+ +-+|.++|..|++. |     .+|.+.+|+++.+++
T Consensus         7 K~alITGas~GIG~aia~~la~~-G-----a~V~~~~~~~~~~~~   45 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGE-G-----AKVAFSDINEAAGQQ   45 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            35556685 67999999999999 8     899999999876654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.32  E-value=0.29  Score=42.07  Aligned_cols=38  Identities=18%  Similarity=0.241  Sum_probs=32.8

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +.+.|.|+ +-+|.++|..|++. |     ++|.+++|+++.+++
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~-G-----~~Vv~~~r~~~~l~~   49 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQ-G-----LKVVGCARTVGNIEE   49 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            45778886 89999999999999 8     999999999876654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=87.28  E-value=0.4  Score=41.03  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=32.0

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +++.|.|+ +-+|.++|..|++. |     .+|.+.+|+++.+++
T Consensus        10 K~alITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~~~~   48 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAA-G-----ANVAVIYRSAADAVE   48 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHT-T-----EEEEEEESSCTTHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            45667786 67999999999999 8     999999999877654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=87.27  E-value=0.24  Score=43.28  Aligned_cols=32  Identities=22%  Similarity=0.400  Sum_probs=29.1

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      -+.|||+|.-|..+|..|+++ |     ++|.+..+..
T Consensus         6 DviIVGsG~aG~v~A~~La~~-G-----~kVlvLEaG~   37 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGA-G-----YKVAMFDIGE   37 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSC
T ss_pred             cEEEECcCHHHHHHHHHHhhC-C-----CeEEEEecCC
Confidence            489999999999999999999 8     9999998753

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=87.20  E-value=0.3  Score=42.00  Aligned_cols=38  Identities=13%  Similarity=0.150  Sum_probs=32.4

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +.+.|-|+ +-+|.++|..|++. |     ++|.+++|+++.+++
T Consensus         9 K~alITGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~l~~   47 (259)
T d2ae2a_           9 CTALVTGGSRGIGYGIVEELASL-G-----ASVYTCSRNQKELND   47 (259)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            46677787 67999999999999 8     999999999876654

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.17  E-value=0.31  Score=39.58  Aligned_cols=32  Identities=25%  Similarity=0.253  Sum_probs=28.8

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      -|.|||+|.-|...|..+++. |     .+|.++.+..
T Consensus         5 DviVIG~GpaGl~aA~~aar~-G-----~kV~vIEk~~   36 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQL-G-----QKVTIVEKGN   36 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHC-C-----CEEEEEecCC
Confidence            488999999999999999998 8     8999998754

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.11  E-value=0.2  Score=44.09  Aligned_cols=35  Identities=17%  Similarity=0.057  Sum_probs=30.4

Q ss_pred             CCceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .+++|.|.|+ |.+|+.++..|.+. |     ++|+.+++..
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~-g-----~~V~~~d~~~   50 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKL-D-----QKVVGLDNFA   50 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHC-c-----CEEEEEECCC
Confidence            4568999896 99999999999999 8     9999998743

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=87.09  E-value=0.26  Score=42.38  Aligned_cols=38  Identities=11%  Similarity=0.187  Sum_probs=32.1

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +.+.|-|+ +-+|.++|..|++. |     .+|.+.+|+++.+++
T Consensus         5 K~alITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~l~~   43 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAE-G-----AKLSLVDVSSEGLEA   43 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            45667786 67999999999999 8     999999999876654

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=86.90  E-value=0.17  Score=42.78  Aligned_cols=32  Identities=25%  Similarity=0.278  Sum_probs=26.1

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      |||.|.|+ |.+|+.++..|.+. |     +.|.+..++
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~-g-----~~v~~~~~~   33 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPV-G-----NLIALDVHS   33 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTT-S-----EEEEECTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-C-----CEEEEECCC
Confidence            89999996 99999999999988 7     655554443

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=86.72  E-value=0.28  Score=41.86  Aligned_cols=37  Identities=14%  Similarity=0.092  Sum_probs=31.0

Q ss_pred             eEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        45 kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      .+.|-|+ +-+|.++|..|++. |     ++|.+.+|+++.+++
T Consensus         6 ~alITGas~GIG~a~a~~l~~~-G-----~~Vv~~~r~~~~l~~   43 (243)
T d1q7ba_           6 IALVTGASRGIGRAIAETLAAR-G-----AKVIGTATSENGAQA   43 (243)
T ss_dssp             EEEESSCSSHHHHHHHHHHHHT-T-----CEEEEEESSHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHc-C-----CEEEEEeCCHHHHHH
Confidence            4555585 78999999999999 8     999999999876654

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.64  E-value=0.26  Score=41.82  Aligned_cols=40  Identities=13%  Similarity=0.007  Sum_probs=33.6

Q ss_pred             CCceEEEECC-CHHHHHHHHHHH---HhcCCCCCCeeEEEEecCCcchhh
Q 019978           42 DPLRIVGVGA-GAWGSVFTAMLQ---DSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        42 ~~~kI~IIGa-G~mG~alA~~La---~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +|++|.|-|+ .-+|.++|..|+   +. |     ++|.+.+|+++.+++
T Consensus         1 ~MKtilITGas~GIG~a~a~~l~~~a~~-g-----~~V~~~~r~~~~~~~   44 (248)
T d1snya_           1 HMNSILITGCNRGLGLGLVKALLNLPQP-P-----QHLFTTCRNREQAKE   44 (248)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSC-C-----SEEEEEESCTTSCHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHH
Confidence            4678999997 789999999886   45 6     899999999987754

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.64  E-value=0.31  Score=42.77  Aligned_cols=31  Identities=23%  Similarity=0.271  Sum_probs=28.3

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRR   80 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r   80 (333)
                      +||.|.|+ |.+|+.|+..|.++ |     ++|+.+++
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~-g-----~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEA-G-----YLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHT-T-----CCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHC-c-----CEEEEEEC
Confidence            48999996 99999999999999 8     99999875

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.58  E-value=0.35  Score=39.43  Aligned_cols=31  Identities=13%  Similarity=0.138  Sum_probs=28.2

Q ss_pred             EEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        46 I~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      +.|||+|.-|...|..+++. |     .+|.+++++.
T Consensus         6 viIIG~GpaG~~aA~~aar~-G-----~kV~vIEk~~   36 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAEL-G-----ARAAVVESHK   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSC
T ss_pred             EEEECCCHHHHHHHHHHHHC-C-----CEEEEEeccC
Confidence            78999999999999999998 8     8999998653

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=86.54  E-value=0.45  Score=40.51  Aligned_cols=34  Identities=9%  Similarity=-0.036  Sum_probs=30.0

Q ss_pred             ceEEEECC-C--HHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGA-G--AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGa-G--~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +++.|.|+ |  -+|.++|..|++. |     .+|.+.+|+++
T Consensus         6 K~alITGaag~~GIG~AiA~~la~~-G-----a~V~i~~r~~~   42 (274)
T d2pd4a1           6 KKGLIVGVANNKSIAYGIAQSCFNQ-G-----ATLAFTYLNES   42 (274)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHTT-T-----CEEEEEESSTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHC-C-----CEEEEEeCCHH
Confidence            57889996 5  4999999999999 8     99999999865

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.48  E-value=0.26  Score=38.61  Aligned_cols=32  Identities=22%  Similarity=0.251  Sum_probs=29.6

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      ++|.|||+|.+|..-+..|.+. |     -+|++++..
T Consensus        14 krvLViGgG~va~~ka~~Ll~~-G-----A~VtVvap~   45 (150)
T d1kyqa1          14 KRILLIGGGEVGLTRLYKLMPT-G-----CKLTLVSPD   45 (150)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGG-T-----CEEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCC
Confidence            7999999999999999999999 8     899999754

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.36  E-value=0.34  Score=41.25  Aligned_cols=38  Identities=11%  Similarity=0.117  Sum_probs=31.8

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +++.|-|+ +-+|.++|..|++. |     ++|.+.+|+++.+++
T Consensus         6 K~~lITGas~GIG~aia~~l~~~-G-----~~V~~~~r~~~~l~~   44 (242)
T d1ulsa_           6 KAVLITGAAHGIGRATLELFAKE-G-----ARLVACDIEEGPLRE   44 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            46677786 67999999999999 8     899999999876543

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=86.25  E-value=0.4  Score=41.85  Aligned_cols=47  Identities=15%  Similarity=0.302  Sum_probs=36.4

Q ss_pred             hHHHHhhccCCCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           30 DELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        30 ~~~~~~~~~~~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      +++++++.-...+..-|.|||+|.-|.+-|..+++. |     .+|.++.+.+
T Consensus         6 ~~~~~~~~~~~~e~~DVvVIGaG~aGl~AA~~aa~~-G-----~~V~vlEK~~   52 (317)
T d1qo8a2           6 DKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKA-G-----ANVILVDKAP   52 (317)
T ss_dssp             HHHHHHHHTCCSEEEEEEEECCSHHHHHHHHHHHHH-T-----CCEEEECSSS
T ss_pred             hhhhhhccCCCCCccCEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence            344445544333445699999999999999999999 8     8999998765

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.11  E-value=0.33  Score=40.98  Aligned_cols=37  Identities=16%  Similarity=0.249  Sum_probs=32.3

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +++.|.|+ +-+|.++|..|++. |     ++|.+.+|+++.++
T Consensus         5 K~~lVTGas~GIG~aia~~l~~~-G-----a~V~~~~r~~~~l~   42 (234)
T d1o5ia_           5 KGVLVLAASRGIGRAVADVLSQE-G-----AEVTICARNEELLK   42 (234)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence            57889996 77999999999999 8     99999999976543

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.08  E-value=0.3  Score=40.30  Aligned_cols=32  Identities=9%  Similarity=0.060  Sum_probs=28.8

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      -|.|||+|.-|...|..+++. |     ++|.+++..+
T Consensus         5 DviVIG~GpaGl~aA~~aa~~-G-----~kV~viE~~~   36 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKF-D-----KKVMVLDFVT   36 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGG-C-----CCEEEECCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccC
Confidence            378999999999999999999 8     9999998653

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.06  E-value=0.42  Score=41.18  Aligned_cols=34  Identities=15%  Similarity=0.161  Sum_probs=30.7

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +||.|.|+ |.+|+.++..|.++ |     ++|+.++|...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~-g-----~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEK-G-----YRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-c-----CEEEEEECCCC
Confidence            48999996 99999999999999 8     99999998764

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=86.01  E-value=0.22  Score=42.97  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=28.1

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .+||.|.|+ |.+|+.++..|.++ |     +.|.+.++..
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~-g-----~~vi~~~~~~   36 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQR-G-----DVELVLRTRD   36 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTC-T-----TEEEECCCTT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHC-c-----CEEEEecCch
Confidence            369999996 99999999999999 7     7776665443

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.72  E-value=0.28  Score=42.09  Aligned_cols=38  Identities=11%  Similarity=0.140  Sum_probs=31.8

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +.+.|-|+ +-+|.++|..|++. |     .+|.+.+|+++.+++
T Consensus        12 K~alITGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~~~~   50 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATA-G-----ASVVVSDINADAANH   50 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            45666675 78999999999999 8     999999999876654

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.70  E-value=0.29  Score=39.99  Aligned_cols=34  Identities=21%  Similarity=0.220  Sum_probs=27.5

Q ss_pred             CceEEEECC-CHHHHHHHHHHHHhcCCCCCCe--eEEEEecCC
Q 019978           43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPG   82 (333)
Q Consensus        43 ~~kI~IIGa-G~mG~alA~~La~~~G~~~~~~--~V~l~~r~~   82 (333)
                      ++||.|.|+ |.+|..++..|.++ |     +  .|....|++
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~-~-----~~~~v~~~~r~~   38 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSE-P-----TLAKVIAPARKA   38 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHC-T-----TCCEEECCBSSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhC-C-----CeEEEEEEeCCc
Confidence            479999998 99999999999998 7     5  455555544

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.68  E-value=0.4  Score=41.01  Aligned_cols=38  Identities=13%  Similarity=0.101  Sum_probs=32.7

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +.+.|.|+ +-+|.++|..|++. |     ++|.+.+|+++.+++
T Consensus         6 K~~lITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~~~~   44 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAEA-G-----CSVVVASRNLEEASE   44 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            56778886 77999999999999 8     999999999876543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.66  E-value=0.31  Score=41.95  Aligned_cols=38  Identities=13%  Similarity=0.224  Sum_probs=32.8

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +++.|.|+ +-+|.++|..|++. |     .+|.+++|+++.+++
T Consensus         9 K~alVTGas~GIG~aiA~~la~~-G-----a~V~~~~r~~~~l~~   47 (259)
T d1xq1a_           9 KTVLVTGGTKGIGHAIVEEFAGF-G-----AVIHTCARNEYELNE   47 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            56778886 77999999999999 8     999999999876654

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=85.58  E-value=1  Score=36.00  Aligned_cols=38  Identities=13%  Similarity=-0.066  Sum_probs=32.0

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+|.|+|+|.+|...++.+... |.    ..|+..++++++++
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~-G~----~~Vi~~d~~~~kl~   66 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAA-GA----SRIIGVGTHKDKFP   66 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TC----SEEEEECSCGGGHH
T ss_pred             CEEEEECCCchhHHHHHHHHHc-CC----ceeeccCChHHHHH
Confidence            5899999999999999998877 71    47889999987765

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=85.56  E-value=0.39  Score=42.82  Aligned_cols=31  Identities=16%  Similarity=0.220  Sum_probs=26.2

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEE-Eec
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRI-WRR   80 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l-~~r   80 (333)
                      |||.|.|+ |.+|+.++..|.++ |     ++|++ +++
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~-g-----~~vv~~~d~   33 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKN-T-----QDTVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHH-C-----SCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-C-----CCEEEEEeC
Confidence            79999996 99999999999999 8     77544 444

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.55  E-value=0.5  Score=39.08  Aligned_cols=36  Identities=14%  Similarity=0.175  Sum_probs=30.2

Q ss_pred             eEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        45 kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      ++.|-|+ +-+|.++|..|++. |     ++|.+.+|+++..+
T Consensus         3 ~alITGas~GIG~aiA~~la~~-G-----a~V~i~~~~~~~~~   39 (241)
T d1uaya_           3 SALVTGGASGLGRAAALALKAR-G-----YRVVVLDLRREGED   39 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHH-T-----CEEEEEESSCCSSS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCccccc
Confidence            4556675 89999999999999 8     99999999887543

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=85.47  E-value=0.39  Score=41.28  Aligned_cols=37  Identities=8%  Similarity=0.031  Sum_probs=32.2

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +++.|.|+ +-+|.++|..|++. |     .+|.+.+|+++.++
T Consensus         6 K~alVTGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~~~   43 (254)
T d1hdca_           6 KTVIITGGARGLGAEAARQAVAA-G-----ARVVLADVLDEEGA   43 (254)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence            57888897 67999999999999 8     89999999987654

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=85.40  E-value=0.34  Score=42.22  Aligned_cols=33  Identities=18%  Similarity=0.313  Sum_probs=30.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .=|.|||+|.-|...|..|++. |     .+|.++.+.+
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~-G-----~~V~llEk~~   56 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDA-G-----AKVILLEKEP   56 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTT-T-----CCEEEECSSS
T ss_pred             ceEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence            4599999999999999999999 8     8999998865

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=85.29  E-value=0.44  Score=38.53  Aligned_cols=32  Identities=19%  Similarity=0.244  Sum_probs=29.0

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      =|.|||+|.-|..-|..+++. |     .+|.++++.+
T Consensus         5 DviIIGgGpAGl~aA~~aar~-G-----~~V~viE~~~   36 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQL-G-----LKTALIEKYK   36 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHH-T-----CCEEEEECCB
T ss_pred             CEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeccc
Confidence            389999999999999999999 8     8999998754

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.18  E-value=0.41  Score=42.03  Aligned_cols=38  Identities=16%  Similarity=0.129  Sum_probs=32.5

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +.+.|.|+ +-+|.++|..|++. |     ++|.+.+|+++.+++
T Consensus        13 KvalITGas~GIG~aia~~la~~-G-----a~Vvi~~r~~~~l~~   51 (297)
T d1yxma1          13 QVAIVTGGATGIGKAIVKELLEL-G-----SNVVIASRKLERLKS   51 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            46778886 77999999999999 8     999999999876654

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.07  E-value=0.36  Score=43.86  Aligned_cols=34  Identities=21%  Similarity=0.277  Sum_probs=30.3

Q ss_pred             eEEEECCCHHHHHHHHHHHH------hcCCCCCCeeEEEEecCCcc
Q 019978           45 RIVGVGAGAWGSVFTAMLQD------SYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~------~~G~~~~~~~V~l~~r~~~~   84 (333)
                      =|.|||+|.-|++.|..|++      + |     ++|.++.+..+.
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~-G-----l~VlllEK~~~p   73 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEK-D-----LRVCLVEKAAHI   73 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTC-C-----CCEEEECSSSST
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcC-C-----CEEEEEcCCCCC
Confidence            59999999999999999997      6 6     899999998653

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=85.04  E-value=0.41  Score=42.14  Aligned_cols=36  Identities=22%  Similarity=0.211  Sum_probs=31.9

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcch
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV   85 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~   85 (333)
                      ++|.|.|+ |.+|+.++..|.++ |     ++|+...|+.+..
T Consensus        12 k~VlVTG~sGfIGs~l~~~Ll~~-G-----~~V~~~vR~~~~~   48 (342)
T d1y1pa1          12 SLVLVTGANGFVASHVVEQLLEH-G-----YKVRGTARSASKL   48 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-c-----CEEEEEeCCchhH
Confidence            69999996 99999999999999 8     9999888886544

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=85.00  E-value=0.34  Score=41.38  Aligned_cols=37  Identities=24%  Similarity=0.276  Sum_probs=30.9

Q ss_pred             eEE-EECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           45 RIV-GVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        45 kI~-IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      ||+ |.|+ +-+|.++|..|++. |     .+|.+++|+++.+++
T Consensus        11 KvalITGas~GIG~a~a~~la~~-G-----a~V~~~~r~~~~l~~   49 (251)
T d2c07a1          11 KVALVTGAGRGIGREIAKMLAKS-V-----SHVICISRTQKSCDS   49 (251)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTT-S-----SEEEEEESSHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHc-C-----CEEEEEECCHHHHHH
Confidence            555 5586 78999999999999 8     999999999876654

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.64  E-value=0.41  Score=41.15  Aligned_cols=39  Identities=13%  Similarity=0.054  Sum_probs=31.9

Q ss_pred             ceEEEE--CCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGV--GAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~II--GaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      ++|+||  |++-+|.++|..|++..|     ..|.+++|+++++++
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g-----~~Vi~~~r~~~~~~~   43 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFS-----GDVVLTARDVTRGQA   43 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSS-----SEEEEEESSHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCC-----CEEEEEECCHHHHHH
Confidence            689877  568999999999987515     899999999887653

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=84.41  E-value=0.46  Score=41.97  Aligned_cols=37  Identities=24%  Similarity=0.373  Sum_probs=31.5

Q ss_pred             CCCCceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        40 ~~~~~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      +.+---+.|||+|.-|..+|..|+++ |     ++|.+..+..
T Consensus         4 ~~~~~dvIVVGsG~aG~v~A~rLaea-G-----~~VlvLEaG~   40 (370)
T d3coxa1           4 DGDRVPALVIGSGYGGAVAALRLTQA-G-----IPTQIVEMGR   40 (370)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSC
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence            34445689999999999999999999 8     9999998753

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.35  E-value=0.57  Score=39.68  Aligned_cols=35  Identities=17%  Similarity=0.282  Sum_probs=29.5

Q ss_pred             ceEEEECCC---HHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           44 LRIVGVGAG---AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        44 ~kI~IIGaG---~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      +++.|.|++   -+|.++|..|++. |     .+|.+.+|+++.
T Consensus         9 K~alITGas~~~GIG~aiA~~la~~-G-----a~V~i~~~~~~~   46 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKEA-G-----AEVALSYQAERL   46 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHHT-T-----CEEEEEESSGGG
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHC-C-----CEEEEEeCcHHH
Confidence            567888874   4999999999999 8     899999988653

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.14  E-value=0.52  Score=41.00  Aligned_cols=34  Identities=21%  Similarity=0.244  Sum_probs=30.0

Q ss_pred             ceE-EEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRI-VGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI-~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +|| .|.|+ |.+|+.++..|.++ |     ++|+.++|...
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~-g-----~~V~~i~r~~~   36 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEK-G-----YEVHGIVRRSS   36 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCCS
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHC-c-----CEEEEEECCCc
Confidence            588 58886 99999999999999 8     99999999764

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=84.10  E-value=0.4  Score=42.88  Aligned_cols=32  Identities=28%  Similarity=0.428  Sum_probs=28.9

Q ss_pred             eEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      -+.|||+|.-|+.+|..|+++ |     ++|.+..+..
T Consensus         4 D~IIVGsG~aG~v~A~rLae~-g-----~~VlvLEaG~   35 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEA-G-----KKVLLLERGG   35 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHhhC-C-----CeEEEEEccC
Confidence            368999999999999999999 8     8999998764

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.91  E-value=2.4  Score=33.22  Aligned_cols=33  Identities=9%  Similarity=0.099  Sum_probs=27.0

Q ss_pred             ceEEEEC-C-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVG-A-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIG-a-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||++|| + .++-.++...++.- |     .++++.....
T Consensus         4 ~ki~~vGD~~nnV~~Sli~~~~~~-g-----~~i~~~~P~~   38 (161)
T d1vlva2           4 VKVVFMGDTRNNVATSLMIACAKM-G-----MNFVACGPEE   38 (161)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHHHT-T-----CEEEEESCGG
T ss_pred             CEEEEEcCCccHHHHHHHHHHHHc-C-----CEEEEecchh
Confidence            6999999 3 57999999998886 7     8888877643

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=83.87  E-value=0.6  Score=39.76  Aligned_cols=35  Identities=14%  Similarity=0.239  Sum_probs=30.2

Q ss_pred             ceEEEEC-CCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcc
Q 019978           44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS   84 (333)
Q Consensus        44 ~kI~IIG-aG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~   84 (333)
                      +.+.|-| ++-+|.++|..|++. |     ++|.+.+|+++.
T Consensus         6 K~alITGas~GIG~aia~~la~~-G-----~~V~~~~~~~~~   41 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFARE-G-----ALVALCDLRPEG   41 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSTTH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHH
Confidence            3666777 489999999999999 8     999999999864

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=83.74  E-value=1.4  Score=34.73  Aligned_cols=39  Identities=15%  Similarity=0.049  Sum_probs=32.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      .+|.|+|+|.+|...+..++.. |    ...|+..++++++++.
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~-g----~~~Vi~~~~~~~rl~~   68 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSA-G----AKRIIAVDLNPDKFEK   68 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T----CSEEEEECSCGGGHHH
T ss_pred             CEEEEEecCCccchHHHHHHHH-h----hchheeecchHHHHHH
Confidence            5899999999999999888877 5    2578889999877653

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=83.62  E-value=0.55  Score=40.29  Aligned_cols=30  Identities=17%  Similarity=0.402  Sum_probs=27.4

Q ss_pred             eEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 019978           45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRR   80 (333)
Q Consensus        45 kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r   80 (333)
                      ||.|.|+ |.+|+.++..|.++ |     ++|+.+++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~-g-----~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQ-G-----IDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHC-c-----CEEEEEEC
Confidence            8999996 99999999999999 8     99999875

>d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Ketopantoate reductase PanE
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=83.61  E-value=0.53  Score=35.69  Aligned_cols=55  Identities=7%  Similarity=-0.073  Sum_probs=40.2

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHH-HHCCCCCC
Q 019978          276 DLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVVM-HGMGRSWQ  330 (333)
Q Consensus       276 Di~gve~~~alkNv~Ai~~Gi~~gl~~~~~n~~~~l~~~~~~E~~~l-~~~G~~~~  330 (333)
                      ||.+..|.+.+.|..-.....+.+..++.-.....++.+.+.|+..+ ++.|..+.
T Consensus         1 dI~~~~W~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~~l~~E~~~va~a~g~~~~   56 (124)
T d1ks9a1           1 NIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTS   56 (124)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             CHHHHHHHHHHHHHhHhHHHHHhCCCchHHHhCHHHHHHHHHHHHHHHHHcCCCCc
Confidence            78899999999998544555555665532112236888999999999 89998765

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=83.58  E-value=2.2  Score=36.50  Aligned_cols=87  Identities=13%  Similarity=0.067  Sum_probs=57.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhhhhhhhHHHHHhhhhhHHHHhhhcccccchhhhhhcC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD  123 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (333)
                      ++|.=+|+|.=.  ++..+++. |     .+|+.+|.+++.++..+.+.               ..|..  .        
T Consensus       122 ~~VLDiGcGsG~--l~i~aa~~-g-----~~V~gvDis~~av~~A~~na---------------~~n~~--~--------  168 (254)
T d2nxca1         122 DKVLDLGTGSGV--LAIAAEKL-G-----GKALGVDIDPMVLPQAEANA---------------KRNGV--R--------  168 (254)
T ss_dssp             CEEEEETCTTSH--HHHHHHHT-T-----CEEEEEESCGGGHHHHHHHH---------------HHTTC--C--------
T ss_pred             CEEEEcccchhH--HHHHHHhc-C-----CEEEEEECChHHHHHHHHHH---------------HHcCC--c--------
Confidence            689999999733  44556666 7     78999999998765432211               01110  0        


Q ss_pred             CcccchhhhhccccccCCCCCCCCeEEecCHHHHh--cCCCEEEEecCchhHHHHHHHHHhhhhc
Q 019978          124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV--WDADIVINGLPSTETKEVFEEISRYWKE  186 (333)
Q Consensus       124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~ea~--~~aDlIIlaVps~~~~~vl~~i~~~l~~  186 (333)
                                             .-....|..+..  +.+|+|+..+....+.++++.+.+.+++
T Consensus       169 -----------------------~~~~~~d~~~~~~~~~fD~V~ani~~~~l~~l~~~~~~~Lkp  210 (254)
T d2nxca1         169 -----------------------PRFLEGSLEAALPFGPFDLLVANLYAELHAALAPRYREALVP  210 (254)
T ss_dssp             -----------------------CEEEESCHHHHGGGCCEEEEEEECCHHHHHHHHHHHHHHEEE
T ss_pred             -----------------------eeEEeccccccccccccchhhhccccccHHHHHHHHHHhcCC
Confidence                                   011223443332  4689999888888899999999999988

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=83.51  E-value=1.4  Score=34.81  Aligned_cols=38  Identities=13%  Similarity=-0.028  Sum_probs=32.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+|.|+|+|.+|...+..++.. |    ...|...++++++.+
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~-g----~~~Vi~~~~~~~k~~   67 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAA-G----AARIIGVDINKDKFA   67 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-T----CSEEEEECSCGGGHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHc-C----CceEEeecCcHHHHH
Confidence            5899999999999999998887 6    258889999987654

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=83.50  E-value=0.49  Score=40.11  Aligned_cols=39  Identities=13%  Similarity=0.192  Sum_probs=30.6

Q ss_pred             ceEE-EECC-CHHHHHHHHHHHHhcCCCCCCee-------EEEEecCCcchhhh
Q 019978           44 LRIV-GVGA-GAWGSVFTAMLQDSYGYLRDKVL-------IRIWRRPGRSVDRA   88 (333)
Q Consensus        44 ~kI~-IIGa-G~mG~alA~~La~~~G~~~~~~~-------V~l~~r~~~~~~~~   88 (333)
                      ++|+ |-|+ +-+|.++|..|++. |     ++       |.+++|+++.++++
T Consensus         1 K~VvlITGas~GIG~aia~~la~~-G-----~~~~~~~~~v~~~~r~~~~l~~~   48 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARA-A-----RHHPDFEPVLVLSSRTAADLEKI   48 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHH-T-----TTCTTCCEEEEEEESCHHHHHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHh-C-----ccccccCcEEEEEeCCHHHHHHH
Confidence            3554 5586 77999999999999 8     54       89999998776543

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=83.47  E-value=0.56  Score=39.60  Aligned_cols=31  Identities=10%  Similarity=0.212  Sum_probs=28.5

Q ss_pred             EEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        46 I~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      +.|||+|.-|...|..+++. |     .+|.+++++.
T Consensus         4 viVIG~G~aG~~aA~~aa~~-G-----~~V~liE~~~   34 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARH-N-----AKVALVEKSR   34 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence            78999999999999999999 8     9999998753

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=83.36  E-value=0.59  Score=41.59  Aligned_cols=32  Identities=25%  Similarity=0.317  Sum_probs=27.3

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRR   80 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r   80 (333)
                      |||.|.|+ |.+|+.++..|.++.|     ++|+++|+
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~-----~~V~~~D~   35 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTN-----HSVVIVDS   35 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCC-----CEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCC-----CEEEEEec
Confidence            79999996 9999999999976425     89999874

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=83.25  E-value=0.57  Score=37.19  Aligned_cols=38  Identities=11%  Similarity=0.004  Sum_probs=30.0

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      .+|.|.|+ |.+|.+..+.+... |     .+|+..++++++.+.
T Consensus        30 ~~Vlv~ga~g~vG~~~iqlak~~-G-----a~Vi~~~~s~~k~~~   68 (179)
T d1qora2          30 EQFLFHAAAGGVGLIACQWAKAL-G-----AKLIGTVGTAQKAQS   68 (179)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHH-T-----CEEEEEESSHHHHHH
T ss_pred             CEEEEEccccccchHHHHHHHHh-C-----CeEeecccchHHHHH
Confidence            58999965 56888888777666 7     899999999876543

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.24  E-value=0.59  Score=39.80  Aligned_cols=38  Identities=16%  Similarity=0.082  Sum_probs=31.4

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      +.+.|-|+ +-+|.++|..|++. |     .+|.+.+|+++.+++
T Consensus         4 KvalITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~~~~   42 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLK-G-----AKVALVDWNLEAGVQ   42 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence            34556676 77999999999999 8     899999999876543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=82.78  E-value=1.2  Score=34.88  Aligned_cols=38  Identities=18%  Similarity=0.176  Sum_probs=31.0

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+|.|+|+ |.+|...++.+... |.    ..|+++++++++.+
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~-g~----~~V~~~~~~~~~~~   67 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAV-SG----ATIIGVDVREEAVE   67 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH-TC----CEEEEEESSHHHHH
T ss_pred             CEEEEEeccccceeeeeeccccc-cc----ccccccccchhhHH
Confidence            58999995 99999999888777 62    58899999886654

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.57  E-value=0.75  Score=39.69  Aligned_cols=34  Identities=24%  Similarity=0.180  Sum_probs=29.9

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +++.|.|+ |.+|+.++..|.++ |     |+|+.++|...
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~-g-----~~V~~~~r~~~   36 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGK-G-----YEVHGLIRRSS   36 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCCS
T ss_pred             CEEEEeCCccHHHHHHHHHHHHC-c-----CEEEEEECCCc
Confidence            57778896 99999999999999 8     99999999643

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.38  E-value=0.78  Score=33.45  Aligned_cols=33  Identities=12%  Similarity=0.249  Sum_probs=27.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      |||.|||.|.=-.+|+..|.+. .     ++|.++--|+
T Consensus         1 MkVLviGsGgREHAia~~l~~s-~-----~~v~~~pGN~   33 (90)
T d1vkza2           1 VRVHILGSGGREHAIGWAFAKQ-G-----YEVHFYPGNA   33 (90)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHT-T-----CEEEEEECCT
T ss_pred             CEEEEECCCHHHHHHHHHHhcC-C-----CeEEEecCCc
Confidence            8999999999999999999987 5     7777664343

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.31  E-value=0.75  Score=38.54  Aligned_cols=34  Identities=18%  Similarity=0.178  Sum_probs=30.5

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      ++|.|.|+ |.+|.++|..|+++ |     ++|.+.++++.
T Consensus         3 K~vlITGas~GIG~a~a~~l~~~-G-----~~V~~~~~~~~   37 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRAR-N-----WWVASIDVVEN   37 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTT-T-----CEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEeCCcc
Confidence            68999997 78999999999999 8     99999988764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=82.05  E-value=0.78  Score=36.88  Aligned_cols=39  Identities=15%  Similarity=0.040  Sum_probs=32.8

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchhh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR   87 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~~   87 (333)
                      ..|+|+|+|.+|....+.+... |.    .+|+..++++++++.
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~-G~----~~Vi~vd~~~~kl~~   69 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSA-GA----SRIIGIDLNKDKFEK   69 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TC----SEEEEECSCGGGHHH
T ss_pred             CEEEEECCCchhHHHHHHHHHc-CC----ceEEEecCcHHHHHH
Confidence            4799999999999999998877 71    479999999987653

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.05  E-value=0.6  Score=40.58  Aligned_cols=35  Identities=17%  Similarity=0.171  Sum_probs=30.3

Q ss_pred             ceEEEECCCHHHHHHHHHHHHh-cCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDS-YGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~-~G~~~~~~~V~l~~r~~~   83 (333)
                      ..|+|||+|.-|.+-|..|+++ .|     ++|++++++..
T Consensus        51 ~~~~~~g~g~~g~~~a~~~~~~~~~-----~~~~~~~~~~~   86 (311)
T d2gjca1          51 SDVIIVGAGSSGLSAAYVIAKNRPD-----LKVCIIESSVA   86 (311)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTT-----SCEEEECSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCC-----CeEEEEEcCCC
Confidence            5799999999999999999964 25     89999998764

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.99  E-value=1.6  Score=35.28  Aligned_cols=32  Identities=16%  Similarity=0.129  Sum_probs=27.1

Q ss_pred             ceEEEECCC-HHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 019978           44 LRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLIRIWRRP   81 (333)
Q Consensus        44 ~kI~IIGaG-~mG~alA~~La~~~G~~~~~~~V~l~~r~   81 (333)
                      ++|+|||.+ .+|..+|..|++. |     ..|+++...
T Consensus        40 k~vvVIGrS~iVGrPLa~lL~~~-g-----atVt~~~~~   72 (170)
T d1a4ia1          40 RHAVVVGRSKIVGAPMHDLLLWN-N-----ATVTTCHSK   72 (170)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHT-T-----CEEEEECTT
T ss_pred             ceEEEEecCCccchHHHHHHHhc-c-----CceEEEecc
Confidence            799999975 5999999999998 7     788877554

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=81.93  E-value=0.52  Score=34.79  Aligned_cols=34  Identities=12%  Similarity=-0.020  Sum_probs=27.5

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR   83 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~   83 (333)
                      +||+|||+|+-|.=+|..|+.. +     .+|++..|+..
T Consensus        33 K~VlVVG~g~Sa~dia~~l~~~-a-----k~v~~~~~r~~   66 (107)
T d2gv8a2          33 ESVLVVGGASSANDLVRHLTPV-A-----KHPIYQSLLGG   66 (107)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTT-S-----CSSEEEECTTC
T ss_pred             CeEEEECCCCCHHHHHHHHHHh-c-----CEEEEEEecCc
Confidence            7999999999999999999887 5     55655555543

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.73  E-value=3.3  Score=33.32  Aligned_cols=33  Identities=18%  Similarity=0.214  Sum_probs=27.7

Q ss_pred             ceEEEEC-C-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           44 LRIVGVG-A-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        44 ~kI~IIG-a-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .||++|| + -++..++...++.- |     .++++.....
T Consensus         6 lkia~vGD~~nnV~~Sli~~~~~~-G-----~~l~l~~P~~   40 (185)
T d1dxha2           6 ISYAYLGDARNNMGNSLLLIGAKL-G-----MDVRIAAPKA   40 (185)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHHT-T-----CEEEEECCGG
T ss_pred             CEEEEEcCCcchHHHHHHHHHHHc-C-----CEEEEEccHH
Confidence            6999999 4 58999999999886 8     8999888753

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=81.41  E-value=0.63  Score=39.68  Aligned_cols=32  Identities=19%  Similarity=0.093  Sum_probs=26.9

Q ss_pred             eEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 019978           45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG   82 (333)
Q Consensus        45 kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~   82 (333)
                      .+.|.|+ +-+|.++|..|++. |     .+|.+.+|++
T Consensus         6 ~alITGas~GIG~aiA~~la~~-G-----a~V~~~~r~~   38 (260)
T d1x1ta1           6 VAVVTGSTSGIGLGIATALAAQ-G-----ADIVLNGFGD   38 (260)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHT-T-----CEEEEECCSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEeCCc
Confidence            4455565 77999999999999 8     9999999975

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=81.37  E-value=0.86  Score=36.13  Aligned_cols=38  Identities=13%  Similarity=0.165  Sum_probs=30.2

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+|.|+|+|.+|...++.+... |    ...|...++++++.+
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~-g----~~~vv~~~~~~~k~~   71 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVM-T----PATVIALDVKEEKLK   71 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-C----CCEEEEEESSHHHHH
T ss_pred             CEEEEeCCChHHHHHHHHHHhh-c----CcccccccchhHHHH
Confidence            5899999999999988888766 6    146778888876554

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.61  E-value=1  Score=37.87  Aligned_cols=37  Identities=14%  Similarity=0.180  Sum_probs=32.1

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      +++.|.|+ +-+|.++|..|++. |     .+|.+.+|+++..+
T Consensus         8 K~~lITGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~~~   45 (237)
T d1uzma1           8 RSVLVTGGNRGIGLAIAQRLAAD-G-----HKVAVTHRGSGAPK   45 (237)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHT-T-----CEEEEEESSSCCCT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCcchhc
Confidence            57888887 67999999999999 8     99999999987543

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=80.38  E-value=1.4  Score=35.59  Aligned_cols=31  Identities=26%  Similarity=0.293  Sum_probs=26.1

Q ss_pred             ceEEEECCCH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 019978           44 LRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR   80 (333)
Q Consensus        44 ~kI~IIGaG~-mG~alA~~La~~~G~~~~~~~V~l~~r   80 (333)
                      ++|+|||-+. +|..++..|.+. |     ..|++...
T Consensus        38 K~v~VIGrS~~VG~Pla~lL~~~-g-----atVt~~h~   69 (166)
T d1b0aa1          38 LNAVVIGASNIVGRPMSMELLLA-G-----CTTTVTHR   69 (166)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTT-T-----CEEEEECS
T ss_pred             ceEEEEeccccccHHHHHHHHHh-h-----cccccccc
Confidence            7999999755 999999999988 7     78877643

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=80.26  E-value=0.28  Score=42.77  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=21.7

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcC
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYG   67 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G   67 (333)
                      |||.|.|+ |.+|+.++..|.++ |
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~-g   24 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAG-A   24 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-S
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-C
Confidence            89999996 99999999999998 7

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.19  E-value=2.8  Score=36.82  Aligned_cols=47  Identities=19%  Similarity=0.266  Sum_probs=31.7

Q ss_pred             cCHHHHhc--CCCEEEEec-Cc-hhHHHHHHHHHhhhhccCCCCEEEEeeecCcc
Q 019978          152 TNLQEAVW--DADIVINGL-PS-TETKEVFEEISRYWKERITVPVIISLAKGVEA  202 (333)
Q Consensus       152 ~d~~ea~~--~aDlIIlaV-ps-~~~~~vl~~i~~~l~~~~~~~~Ivs~~kGi~~  202 (333)
                      .+++++++  ++|++|-+. +. -..+++++.++...+    +.+|..++|-.+.
T Consensus        96 ~~L~e~i~~~kptvliG~S~~~g~ft~evi~~Ma~~~~----~PIIFaLSNPt~~  146 (294)
T d1pj3a1          96 DTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINE----RPVIFALSNPTAQ  146 (294)
T ss_dssp             SSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCS----SCEEEECCSSGGG
T ss_pred             hHHHHHHHhcCCceEEEecCCCCcCCHHHHHHHHhcCC----CcEEEEccCCCCc
Confidence            46777765  677766654 32 467999998886543    5778888876553

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=80.19  E-value=1.1  Score=35.87  Aligned_cols=38  Identities=16%  Similarity=0.003  Sum_probs=31.1

Q ss_pred             ceEEEECCCHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGaG~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+|.|+|+|.+|...++.+... |.    ..|++.++++++.+
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~-Ga----~~Vi~~d~~~~r~~   67 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIA-GA----SRIIAIDINGEKFP   67 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TC----SEEEEECSCGGGHH
T ss_pred             CEEEEECCChHHHHHHHHHHHh-CC----ceeeeeccchHHHH
Confidence            5899999999999999888777 71    36888899887654

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.12  E-value=1.7  Score=34.23  Aligned_cols=37  Identities=16%  Similarity=0.092  Sum_probs=29.4

Q ss_pred             ceEEEECC-CHHHHHHHHHHHHhcCCCCCCeeEEEEecCCcchh
Q 019978           44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD   86 (333)
Q Consensus        44 ~kI~IIGa-G~mG~alA~~La~~~G~~~~~~~V~l~~r~~~~~~   86 (333)
                      .+|.|.|+ |.+|.+..+.+... |     .+|+..++++++.+
T Consensus        30 ~~VlV~Ga~G~vG~~aiq~a~~~-G-----~~vi~~~~~~~~~~   67 (174)
T d1yb5a2          30 ESVLVHGASGGVGLAACQIARAY-G-----LKILGTAGTEEGQK   67 (174)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHT-T-----CEEEEEESSHHHHH
T ss_pred             CEEEEEecccccccccccccccc-C-----cccccccccccccc
Confidence            58999996 99999888877666 7     88988888775543