Citrus Sinensis ID: 020054

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
Protein Sequence
MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSVLPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWEAASRSAKSRGSSEVARKEPTKEELSSDDDSEEIFAVDWRAQHL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEccccccccccHHHHHHccHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccccccccccccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHccccccccHEEEccccccEEEEEcEEEcHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccccccccccccccccHHHHHHcc
Coil and Loop (DISEMBL)
MDAARKKAIFRAKLNAQkkekrinsplvrynefdqpvcrVCDVvlksdsqwdaHQASRKHHEAIKNikagatgnnsrmvsdaakpeagressrsesrsasqnaEIESSAKLgkartssvlpsnffdsqeakrpktdsvklvdpdsnktsgvsakTQAMKSVVLENemdelpngnavdakkgqplkehpekskqsVDSEAKQIKgalpegffdnkEADLLArgikpvkpdvkDEYKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWEAASRSAksrgssevarkeptkeelssdddseeiFAVDWRAQHL
Flexible Loop (DISEMBL)
mdaarkkaifraklnaqkkekrinsplvrynefdqpvCRVCDVVLKSDSQWDAHQasrkhheaiknikagatgnnsrmvSDAAkpeagressrsesrsasqnaeiessaklgkartssvlpsnffdsqeakrpktdsvklvdpdsnktsgvsaktqAMKSVVLENEmdelpngnavdakkgqplkehpekskqsvdsEAKQIKGALPEGFFDNKEADLLargikpvkpdvkDEYKEYEKLIQEDLKQVDDRFEEEEIDAAEMieeyesvdqktfREKVEALRKKkmeweaasrsaksrgssevarkeptkeelssdddseeifAVDWRAQHL
Low Complexity Region (SEG)
MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNSRMVSDAAKPeagressrsesrsasQNAEIESSAKLGKARTSSVLPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFeeeeidaaemieeyeSVDQKTFREKVEALRKKKMEWEaasrsaksrgssEVARKEPTKeelssdddseeIFAVDWRAQHL
Disordered region (IsUnstruct)
************************SPLVRYNEFDQPVCRVCDVVLKSD*************************************************************************************************************************************************************************LLA****************************************************************************************************************
Disordered Region (DISOPRED)
**************************LVRYNEFDQPVCRVCDVVLKSDSQWDAHQAS********************************************************************************************************************************************************FFDNKEADL*******************************************MIEEYESVDQKTFREKVE*******************************************FAVDWRAQH*
Disordered Region (DISEMBL)
MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQ***********EAIKNIKAGATGNN******************************************SVLPSNFFDS***********KLVD*************QAMKSVVLENEMDELPNGNAVDAKKG******************KQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVE***************************************SEEIFAVDWRAQHL
Disordered Region (DISPRO)
*******************EKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGA***********************************************************************************************************************************KGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWEAASRS***************************IFAVDWR**HL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSVLPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGSSEVARKEPTKEELSSDDDSEEIFAVDWRAQHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	332	2.2.26 [Sep-21-2011]
Q6DJ13	357	Zinc finger protein 830 O	yes	no	0.927	0.862	0.252	7e-11
Q8R1N0	363	Zinc finger protein 830 O	yes	no	0.921	0.842	0.269	1e-10
Q63ZM9	356	Zinc finger protein 830 O	N/A	no	0.813	0.758	0.246	2e-09
Q3MHS2	370	Zinc finger protein 830 O	yes	no	0.882	0.791	0.232	3e-08
Q6P0I6	326	Zinc finger protein 830 O	yes	no	0.545	0.555	0.232	0.0002
Q96NB3	372	Zinc finger protein 830 O	yes	no	0.150	0.134	0.34	0.0003

>sp|Q6DJ13|ZN830_XENTR Zinc finger protein 830 OS=Xenopus tropicalis GN=znf830 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 162/368 (44%), Gaps = 60/368 (16%)

Query: 2   DAARKKAI----FRAKLNAQKK----EKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDA 53
           DA +KK +     R  + A+++    +KRI SPL +YN     +C VC++ +KS+  W A
Sbjct: 3   DAGKKKLVQQEELRRLMKAKQRRSCSKKRIESPLAKYNSLGHLLCVVCNIQIKSELLWPA 62

Query: 54  HQASRKHHEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGK 113
           H   ++H E +  +K    G+ + + S + K +      R  S   +Q ++     +   
Sbjct: 63  HILGKQHKEKVAELK----GSKANISSPSNKVQLHHIMKRKGSEPENQESKRIKGTEDQP 118

Query: 114 ARTSSVLPSNFFDSQEAKRP-----KTDSVKLV--------------DPDSNKTSGVSAK 154
               + LP  FF+++E         K  S+KL+                + N+ S    K
Sbjct: 119 TALKTKLPEGFFETEETSSAKHAAEKAPSLKLLAGDYEDDDEVEGEEYENVNEASTSLQK 178

Query: 155 TQAMKSVVLENEMDELPNGNAVDAKKGQPLKEHP---------EKSKQSVDSEAKQIKGA 205
              +      +  D LP  +  ++K   PL  H          EK  +  D+ A+    A
Sbjct: 179 PAEIPLPPPTSSADRLP-ADFFESK--MPLVSHSGSVLKADIQEKIVERKDNTAE----A 231

Query: 206 LPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEE 265
           LPEGFFD+ EAD   R +   K  +  E++E++K I++ +  V D    EE +   +  +
Sbjct: 232 LPEGFFDDPEADAKVRKVDAPKDQMDKEWEEFQKEIRQ-VNSVSDAIVAEEDEEGRLDRQ 290

Query: 266 YESVDQK--TFREKVEALRKKKMEWEAASRSA-KSRGSSEVARKEPTKEELSSDDDSE-- 320
            + +D++   +R +VE LR  K   + A     KS+ S +       +EE+ SDD+    
Sbjct: 291 IDEIDEQIECYR-RVEHLRDLKDTLQDAKMEVLKSKSSKK------WQEEIGSDDEETLP 343

Query: 321 EIFAVDWR 328
            +   +WR
Sbjct: 344 SLLYKNWR 351

May act as a regulator of the cell cycle in embryos by participating in control of M phase.
Xenopus tropicalis (taxid: 8364)

>sp|Q8R1N0|ZN830_MOUSE Zinc finger protein 830 OS=Mus musculus GN=Znf830 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 160/352 (45%), Gaps = 46/352 (13%)

Query: 9   IFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK 68
           + R K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  +K
Sbjct: 24  LMREKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAELK 83

Query: 69  A--GAT-GNNSRMVSDAAKPEAGR-ESSRSESRSASQNAEIE-----SSAKLGKARTS-- 117
              GAT G ++  V  A K  A   ES  ++   AS   +++     SSA L  AR +  
Sbjct: 84  GAKGATQGPSTGTVPQATKRRATDVESQDAKKAKASAGPQVQPSTSASSANLDAARAAPS 143

Query: 118 ----SVLPSNFFD-----SQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMD 168
                +LP ++ D      +     + DS K + PD+       A  +   S VL N+  
Sbjct: 144 KPGLGLLP-DYDDEEEEEEEGGGEERRDSSKHL-PDAQGKEHSLASPRETTSNVLPND-- 199

Query: 169 ELP-NGNAVDAKKGQPLKEHP---EKSK--QSVDSEAKQIKGALPEGFFDNKEADLLARG 222
             P N N   A    PL  H    EK++  + V    +    ALPEGFFD+ E D   R 
Sbjct: 200 --PFNTNPPKA----PLVPHSGSIEKAEIHEKVVERRENTAEALPEGFFDDPEVDAKVRK 253

Query: 223 IKPVKPDVKDEYKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQK--TFREKVEA 280
           +   K  +  E+ E++K +++ +  + +    EE +   +  +   +D++   +R +VE 
Sbjct: 254 VDAPKDQMDKEWDEFQKAMRQ-VNTISEAIVAEEDEEGRLDRQIGEIDEQIECYR-RVEK 311

Query: 281 LRKKKMEWEAASRSAKSRGSSEVARKEPTKEELSSDDDSE--EIFAVDWRAQ 330
           LR ++ E +   +   +    E+ +KE  +E + SDD+ E  ++ + DWR +
Sbjct: 312 LRNRQDEIKNKLKEVLT--IKELQKKE--EENVDSDDEGELQDLLSQDWRVK 359

Acts as an important regulator of the cell cycle in the preimplantation embryo by controlling different aspects of M phase.

Mus musculus (taxid: 10090)

>sp|Q63ZM9|ZN830_XENLA Zinc finger protein 830 OS=Xenopus laevis GN=znf830 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 134/300 (44%), Gaps = 30/300 (10%)

Query: 9   IFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK 68
           + +AK      +KRI SPL +YN      C VC+ ++KS+  W AH   ++H E +  +K
Sbjct: 18  LMKAKQRESSSKKRIESPLAKYNSLGHLSCVVCNSLIKSELLWPAHILGKQHKEKVAELK 77

Query: 69  AGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSVLPSNFFDSQ 128
               G  +   S +   E  R + R  S    Q ++    ++   + +++ LP  FF+ +
Sbjct: 78  ----GTKATTSSPSNTIEYPRITKRKGSEPEKQESKRTKGSEDHPSASTTKLPEEFFEKE 133

Query: 129 EAKRP-KTDSVKLVDPDSNKTSGVSAKT--------QAMKSVVLENEMDELPNGNAVD-- 177
           +        S+KL+  D        A+         +A  S++   E+   P  ++ D  
Sbjct: 134 KTSSAGNAPSLKLLAGDYEDVDDDDAEEGEEYENAKEASSSLLKPAEIPLPPPTSSADNL 193

Query: 178 ----AKKGQPLKEHPEKSKQSVDSEAKQIKG------ALPEGFFDNKEADLLARGIKPVK 227
                +   PL  H   S    D + K ++       ALPEGFFD+ E D   R +   K
Sbjct: 194 PADFFENKMPLVSH-SGSVLKADIQEKIVERKENTAEALPEGFFDDPEVDAKVRKVDAPK 252

Query: 228 PDVKDEYKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQ--KTFREKVEALRKKK 285
             +  E++E++K I++ +  V +    EE +   +  + + +D+  + +R +VE LR +K
Sbjct: 253 DQMDKEWEEFQKEIRQ-VNTVSEAIVAEEDEEGRLDRQIDEIDEQIQCYR-RVEHLRDRK 310

May act as a regulator of the cell cycle in embryos by participating in control of M phase.

Xenopus laevis (taxid: 8355)

>sp|Q3MHS2|ZN830_RAT Zinc finger protein 830 OS=Rattus norvegicus GN=Znf830 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 142/348 (40%), Gaps = 55/348 (15%)

Query: 21  KRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNSRMVS 80
           KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  +K GA G      +
Sbjct: 36  KRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAELK-GAKGATQGPSA 94

Query: 81  DAAKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSVLPS------NFFDS-QEAKRP 133
             A     R+++  ES+           AK  KA    V PS      NF  S +EA R 
Sbjct: 95  GTAPQPTKRKTTDVESQ----------DAKKAKASVDQVQPSTSASSANFEKSGKEATRV 144

Query: 134 KTDSVKL-VDPDSNKTSGVSAKTQAMKSVVLENEMDELPNG------------NAVDAKK 180
            +    L + PD  +      + +        +    LP+                +   
Sbjct: 145 ASSKTGLGLLPDYEEEEEEEEEEELGGGEERRDSSKHLPDAQGREHSLASPRETTSNVLP 204

Query: 181 GQPLKEHPEKS--------------KQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPV 226
             P   +P K+               + V    +    ALPEGFFD+ E D   R +   
Sbjct: 205 NDPFNTNPPKAPLVPHSGSIEKAEIHEKVVERRENTAEALPEGFFDDPEVDAKVRKVDAP 264

Query: 227 KPDVKDEYKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQK--TFREKVEALRKK 284
           K  +  E+ E++K +++ +  + +    EE +   +  +   +D++   +R +VE LR +
Sbjct: 265 KDQMDKEWDEFQKAMRQ-VNTISEAIVAEEDEEGRLDRQIGEIDEQIECYR-RVEKLRNR 322

Query: 285 KMEWEAASRSAKSRGSSEVARKEPTKEELSSDDDSE--EIFAVDWRAQ 330
           + E +   +   +    E+ +KE  +E + SDD+ E  ++ + DWR +
Sbjct: 323 QDEIKNKLKEVLT--IKELQKKE--EENVDSDDEGELQDLLSQDWRVK 366

May act as a regulator of the cell cycle in embryos by participating in control of M phase.

Rattus norvegicus (taxid: 10116)

>sp|Q6P0I6|ZN830_DANRE Zinc finger protein 830 OS=Danio rerio GN=znf830 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 104/262 (39%), Gaps = 81/262 (30%)

Query: 19  KEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNSRM 78
           ++KR+ SP  RY+   Q +C +CD  +K+   W  H   ++H + ++ +K+     ++  
Sbjct: 31  RQKRVESPFARYSGAGQLMCALCDAPVKNALLWQTHVLGKQHKDKLQELKSRTAPAHTPA 90

Query: 79  V--SDAAKPEAGRESSRSESRSASQNAEIESSAKL------------------------- 111
              + A  P A   SS +  R+A         AKL                         
Sbjct: 91  PAHTPAHTPAAASSSSSTLKRAAEPPPAPGKRAKLQTGAGAGLGLLAGHYDDDDDDEGGA 150

Query: 112 GKARTS----SVLPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEM 167
           G+ +T+    S LP++FFDS  A  P         P S+  SG  +K +  +S       
Sbjct: 151 GERKTAPPTDSALPADFFDSGPAPAP---------PISH--SGSVSKAEQQES------- 192

Query: 168 DELPNGNAVDAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVK 227
                            +E PE   +S           LPEGFFD+   D   R +   K
Sbjct: 193 -----------------QEPPENRPES-----------LPEGFFDDPVRDAQVRQVDTPK 224

Query: 228 PDVKDEYKEYEKLIQEDLKQVD 249
             ++ E++E++K    +++QV+
Sbjct: 225 DQLEREWEEFQK----EMRQVN 242

May act as a regulator of the cell cycle in embryos by participating in control of M phase.

Danio rerio (taxid: 7955)

>sp|Q96NB3|ZN830_HUMAN Zinc finger protein 830 OS=Homo sapiens GN=ZNF830 PE=1 SV=2

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 21 KRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAG 70
          KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  +K  
Sbjct: 36 KRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAELKGA 85

May act as a regulator of the cell cycle in embryos by participating in control of M phase.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
24461854	344	CTV.12 [Citrus trifoliata]	1.0	0.965	0.950	1e-178
357491925	325	Zinc finger protein [Medicago truncatula	0.966	0.987	0.586	1e-91
356499554	326	PREDICTED: zinc finger protein 830-like	0.954	0.972	0.580	1e-89
224065088	331	predicted protein [Populus trichocarpa]	0.981	0.984	0.587	1e-88
388512271	304	unknown [Lotus japonicus]	0.897	0.980	0.576	4e-86
356559669	326	PREDICTED: zinc finger protein 830-like	0.966	0.984	0.587	7e-86
255558696	375	Coiled-coil domain-containing protein, p	0.975	0.864	0.530	1e-84
449460630	305	PREDICTED: zinc finger protein 830-like	0.906	0.986	0.523	2e-77
225443180	328	PREDICTED: zinc finger protein 830-like	0.885	0.896	0.562	3e-73
297832920	313	hypothetical protein ARALYDRAFT_477529 [	0.918	0.974	0.517	8e-70

>gi|24461854|gb|AAN62341.1|AF506028_8 CTV.12 [Citrus trifoliata]

 Score =  629 bits (1621), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 327/344 (95%), Positives = 329/344 (95%), Gaps = 12/344 (3%)

Query: 1   MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKH 60
           MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKH
Sbjct: 1   MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKH 60

Query: 61  HEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSVL 120
           HEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQN EIESSAKLGKARTSSVL
Sbjct: 61  HEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNVEIESSAKLGKARTSSVL 120

Query: 121 PSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKK 180
           PSNFFDSQE KRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKK
Sbjct: 121 PSNFFDSQEVKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKK 180

Query: 181 GQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKL 240
           GQPLKEHPEKSKQ+VDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKL
Sbjct: 181 GQPLKEHPEKSKQNVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKL 240

Query: 241 IQEDLKQVDDRFEEEE------------IDAAEMIEEYESVDQKTFREKVEALRKKKMEW 288
           IQEDLKQVDDRFEEEE            IDAAEMIEEYESVDQKTF E+VEALRKKKMEW
Sbjct: 241 IQEDLKQVDDRFEEEENINNLKWTCEMQIDAAEMIEEYESVDQKTFSERVEALRKKKMEW 300

Query: 289 EAASRSAKSRGSSEVARKEPTKEELSSDDDSEEIFAVDWRAQHL 332
           EAASRSAKSRGSSEVARKEPTKEELSSDDDSEEIFAVDWRAQHL
Sbjct: 301 EAASRSAKSRGSSEVARKEPTKEELSSDDDSEEIFAVDWRAQHL 344

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491925|ref|XP_003616250.1| Zinc finger protein [Medicago truncatula] gi|355517585|gb|AES99208.1| Zinc finger protein [Medicago truncatula]

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 197/336 (58%), Positives = 242/336 (72%), Gaps = 15/336 (4%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FRAKLNAQKK+KRI+SPLVRYNEFDQPVCRVCDVVLKS+S WDAHQ SRK
Sbjct: 1   MDAQAKKKALFRAKLNAQKKDKRIDSPLVRYNEFDQPVCRVCDVVLKSESLWDAHQVSRK 60

Query: 60  HHEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSV 119
           H EAI N+KA A G   +     AKP+  +  ++ E  S SQ    +S  ++ K ++SSV
Sbjct: 61  HREAITNLKANAAGLTKQ---SNAKPDIPK--AKPEQPSGSQFKIPKSPQEVPKPQSSSV 115

Query: 120 LPSNFFDSQEAKRPKT--DSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDEL-PNGNAV 176
           LP +FFD+ +AK+ ++  DSV LVD D  +  G SA++    SV    E D    N N  
Sbjct: 116 LPPDFFDNNDAKKTRSEKDSVHLVDSDLGRNMGASAQS----SVSNSKEKDHFHGNNNPT 171

Query: 177 DAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKE 236
            +K  Q   E  + S +++D+E KQ KGALPEGFFDNKEADL ARGIK VKPDVKDEYKE
Sbjct: 172 QSKVNQATVETKQTSVKTIDAEIKQGKGALPEGFFDNKEADLRARGIKLVKPDVKDEYKE 231

Query: 237 YEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWEAASRSAK 296
           +EKLIQEDL++VDDR EEEEIDAAEMIEE ESV+Q+  +EKVE L++K++E +A+   AK
Sbjct: 232 FEKLIQEDLQEVDDRMEEEEIDAAEMIEEAESVEQRNLKEKVEMLKRKRLELKAS--KAK 289

Query: 297 SRGSSEVARKEPTKEELSSDDDSEEIFAVDWRAQHL 332
              SS V  KE   E+ SSDD+S E FAVDWRAQHL
Sbjct: 290 LSKSSGVVTKEARHEDSSSDDESGENFAVDWRAQHL 325

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499554|ref|XP_003518604.1| PREDICTED: zinc finger protein 830-like [Glycine max]

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 198/341 (58%), Positives = 239/341 (70%), Gaps = 24/341 (7%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FRAKLNAQKK+KRI SPLVRYNEFD PVCRVCDVVLKS+S WDAHQ SRK
Sbjct: 1   MDAQAKKKALFRAKLNAQKKKKRIESPLVRYNEFDLPVCRVCDVVLKSESLWDAHQVSRK 60

Query: 60  HHEAIKNIKAGATG----NNSRMVSDA----AKPEAGRESSRSESRSASQNAEIESSAKL 111
           H EAI N+KA A G    N ++ V+D     AKPE   +S         Q+   E+S  +
Sbjct: 61  HREAISNLKANAAGLTQHNIAKPVADTSFFKAKPEHSLDS---------QSKAPEASQVV 111

Query: 112 GKARTSSVLPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELP 171
            K ++SSVLP  FFD  ++   KT S  LVD D  + +GVSA++Q +    LE E     
Sbjct: 112 SKPQSSSVLPPGFFD--DSNSGKTRSEHLVDSDLGRKAGVSAQSQVLN---LEKEKGHFH 166

Query: 172 NGNAVDAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVK 231
           + NA  +  GQ   E  +   +S D+E +QIKG LPEGFFDNKEADL ARGIK VKPDVK
Sbjct: 167 DNNAAKSNVGQAAMESRQTPVKSTDTEIQQIKGTLPEGFFDNKEADLRARGIKLVKPDVK 226

Query: 232 DEYKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWEAA 291
           DEYKE+EKLIQEDL++VDDR EEEEIDAAEMIEE E V+QK   EKVE L+K+++E +AA
Sbjct: 227 DEYKEFEKLIQEDLREVDDRLEEEEIDAAEMIEEEEVVEQKILSEKVEMLKKRRLELKAA 286

Query: 292 SRSAKSRGSSEVARKEPTKEELSSDDDSEEIFAVDWRAQHL 332
           + +AK   SSE+  KE  +EE SSDD+SE   AVDWRAQHL
Sbjct: 287 N-AAKRSKSSEIVAKESRREEPSSDDESEGNLAVDWRAQHL 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065088|ref|XP_002301664.1| predicted protein [Populus trichocarpa] gi|222843390|gb|EEE80937.1| predicted protein [Populus trichocarpa]

 Score =  332 bits (851), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 198/337 (58%), Positives = 247/337 (73%), Gaps = 11/337 (3%)

Query: 1   MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKH 60
           MDAA+KKA+FR+KLNAQ+KEK+I+SPLVRYNE DQPVCRVCDVVLKS+ QWDAHQASRKH
Sbjct: 1   MDAAKKKALFRSKLNAQRKEKKIDSPLVRYNELDQPVCRVCDVVLKSEFQWDAHQASRKH 60

Query: 61  HEAIKNIKAGATGNNSRMVSDA-AKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSV 119
            EAI NIKA A     + V++A ++P A    S+    +  Q A+ ES  +L   R  S 
Sbjct: 61  IEAINNIKANAA--RLKNVNNAKSEPSAVSTGSKHADNAQLQVAKSESLTQL--PRPQSA 116

Query: 120 LPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAK 179
           LP +FFD++EAKR KTD+VK  + DS+     S +T+A +S+ LE+E   LP+GN +  K
Sbjct: 117 LPPDFFDNKEAKRQKTDAVKPSELDSSLKPAGSIQTKATRSL-LEDETGGLPSGNHLQTK 175

Query: 180 KGQPLK----EHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYK 235
             +  +           +  DS+AKQ +GALPEGFFDNKEADL ARGIKPVKPDV DEYK
Sbjct: 176 NTEDARGITNTPTPTPTEISDSQAKQGQGALPEGFFDNKEADLRARGIKPVKPDVNDEYK 235

Query: 236 EYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWEAASRSA 295
           E+EKLIQ DL++VDDR EEEE+DAAE IEE E+++QK +RE+VE L+KKKME  AA  S 
Sbjct: 236 EFEKLIQGDLREVDDRLEEEEVDAAETIEEAETLEQKAYRERVELLKKKKMELMAARASE 295

Query: 296 KSRGSSEVARKEPTKEELSSDDDSEEIFAVDWRAQHL 332
           +S+G SEVA KE + E+ SSDDDS+  FAVDWRAQHL
Sbjct: 296 RSKG-SEVASKESSHEDSSSDDDSDVNFAVDWRAQHL 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512271|gb|AFK44197.1| unknown [Lotus japonicus]

 Score =  324 bits (830), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 195/338 (57%), Positives = 227/338 (67%), Gaps = 40/338 (11%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FRAKLNAQKKEKRI SPLVRYNEFDQPVCRVCDVVLKS+S WDAHQ SRK
Sbjct: 1   MDAQAKKKALFRAKLNAQKKEKRIESPLVRYNEFDQPVCRVCDVVLKSESNWDAHQVSRK 60

Query: 60  HHEAIKNIKAGATG----NNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKAR 115
           H EAI N+KA A G    NN++     AKPE           S SQ    +SS ++ K +
Sbjct: 61  HREAISNLKANAAGLTQNNNAKREITKAKPEQP---------SVSQFKMPQSSQEVPKPQ 111

Query: 116 TSSVLPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNA 175
           +SSVLP NFFD   A++  ++                          LENE       N 
Sbjct: 112 SSSVLPPNFFDDSHARKASSEKD------------------------LENEKGNFHANNT 147

Query: 176 VDAK-KGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEY 234
             +K   Q   E  + S ++ D E K +K ALPEGFFDNKEADL ARGIKPV+PD+KDEY
Sbjct: 148 AQSKVSSQAAMETRQTSDKTADKETKPVKEALPEGFFDNKEADLRARGIKPVRPDIKDEY 207

Query: 235 KEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWEAASRS 294
           KE+EKLIQEDLK+VDDRFEEEEIDAAEMIEE ESV+QK FREKVE L++K++E + AS+S
Sbjct: 208 KEFEKLIQEDLKEVDDRFEEEEIDAAEMIEEAESVEQKNFREKVELLKRKRLE-QKASKS 266

Query: 295 AKSRGSSEVARKEPTKEELSSDDDSEEIFAVDWRAQHL 332
           AK   SSEV  KE   EE SSDD+S   FAVDWRAQHL
Sbjct: 267 AKRSKSSEVVTKESRHEESSSDDESGGNFAVDWRAQHL 304

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559669|ref|XP_003548121.1| PREDICTED: zinc finger protein 830-like [Glycine max]

 Score =  323 bits (828), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 198/337 (58%), Positives = 242/337 (71%), Gaps = 16/337 (4%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FRAKLNAQKKEKRI SPLVRYNEFDQPVCRVCDVVLKS+S WDAHQ SRK
Sbjct: 1   MDAQAKKKALFRAKLNAQKKEKRIESPLVRYNEFDQPVCRVCDVVLKSESLWDAHQVSRK 60

Query: 60  HHEAIKNIKAGATG----NNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKAR 115
           H EAI N+KA A G    NN++ V+D++  +A  E S       SQ    E+S  + K +
Sbjct: 61  HREAISNLKANAAGLTQHNNAKPVADSSFSKAKPEHSLD-----SQFKPPEASQLVSKPQ 115

Query: 116 TSSVLPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNA 175
           +SSVLP  FFD  ++   KT S  LVD D  + +GVSAK+Q      LE +  +  + N 
Sbjct: 116 SSSVLPPGFFDDSDSG--KTRSEHLVDSDLGRKAGVSAKSQVSN---LEKDKGQFDDNNV 170

Query: 176 VDAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYK 235
             +   Q   +  + S ++ D+E +Q+KG LPEGFFDNKEADL ARGIK VKPDVKDEYK
Sbjct: 171 AKSNVSQATTDSRQTSVKTTDTEIQQVKGILPEGFFDNKEADLRARGIKLVKPDVKDEYK 230

Query: 236 EYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWEAASRSA 295
           E+EKLIQEDL++VDDR EEEEIDAAEMIEE E V+QK   EKVE L+K+++E +AA+ +A
Sbjct: 231 EFEKLIQEDLQEVDDRLEEEEIDAAEMIEEEEVVEQKMLSEKVEMLKKRRLELKAAN-AA 289

Query: 296 KSRGSSEVARKEPTKEELSSDDDSEEIFAVDWRAQHL 332
           K   SSE+  KE  +EE SSDD+SEE FAVDWRAQHL
Sbjct: 290 KRSKSSEIVAKESRQEESSSDDESEENFAVDWRAQHL 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558696|ref|XP_002520372.1| Coiled-coil domain-containing protein, putative [Ricinus communis] gi|223540419|gb|EEF41988.1| Coiled-coil domain-containing protein, putative [Ricinus communis]

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 203/383 (53%), Positives = 246/383 (64%), Gaps = 59/383 (15%)

Query: 1   MDAA-RKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDAA +KKA+FRAKLNAQKK+KRI+SPLVRYNE DQPVCR+C+VVLKS+S W AHQASRK
Sbjct: 1   MDAAAKKKALFRAKLNAQKKDKRIDSPLVRYNESDQPVCRICNVVLKSESLWAAHQASRK 60

Query: 60  HHEAIKNIKAGATGNNSRMVSDAAKPEAGRESSR--SESRSASQNAEIESSAKLGKARTS 117
           HHEAI NIK  A      +  ++ KPEA +E++R   E+ +   + + E S +L K ++S
Sbjct: 61  HHEAINNIKNAA----GHLRVNSTKPEAHKENTRPKYENDAELHDTKSEPSTRLTKPQSS 116

Query: 118 SVLPS-------------------------------------------NFFDSQEAKRPK 134
           SVLP+                                           NFFD  EAKR K
Sbjct: 117 SVLPADFFDTHKTETTLPKHAHYVELGDKMPEPSSKSSKHQSSSVLPPNFFDDPEAKRQK 176

Query: 135 TDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKKGQPLKEHPEKSKQS 194
            D+ K V+ +S+K SG SA T+     +LE+EMD   +GN ++ K     +E       +
Sbjct: 177 IDTAKSVNSNSHKKSGNSAYTKV--ESLLEDEMDG-SSGNDMETKNTGRAREFVHTVDIT 233

Query: 195 VDSE-AKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFE 253
             S   KQ+KGALPEGFFD+KEADL ARGIK VKPDVKDEYKE+EKLIQEDL++VDDR E
Sbjct: 234 GGSRYMKQVKGALPEGFFDDKEADLRARGIKLVKPDVKDEYKEFEKLIQEDLQEVDDRLE 293

Query: 254 EEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWEAASRSAKSRGSSEVARKEPTKEEL 313
           EEEIDAAEMIEE E+V+QKT+REKVE LRKKKME  AA RSAK R  S V+ K  +    
Sbjct: 294 EEEIDAAEMIEEAETVEQKTYREKVEFLRKKKMELIAA-RSAKRRRDSGVSGKMSSSNAE 352

Query: 314 SSD----DDSEEIFAVDWRAQHL 332
           SS     DD  E FAVDWRAQHL
Sbjct: 353 SSTDDEDDDDNENFAVDWRAQHL 375

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460630|ref|XP_004148048.1| PREDICTED: zinc finger protein 830-like [Cucumis sativus] gi|449516880|ref|XP_004165474.1| PREDICTED: zinc finger protein 830-like [Cucumis sativus]

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 176/336 (52%), Positives = 231/336 (68%), Gaps = 35/336 (10%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A++KA+FRAKLNAQKK+KRI+SPLVRYNE DQPVCRVCD+VLKS++ WDAHQ+SR+
Sbjct: 1   MDAQAKRKALFRAKLNAQKKDKRIDSPLVRYNELDQPVCRVCDMVLKSEAYWDAHQSSRR 60

Query: 60  HHEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIE--SSAKLGKARTS 117
           HHEAI+N+KA A G   R   +  K EA  E   +    + +  E+   +S++L K  +S
Sbjct: 61  HHEAIQNLKASAAG---RSGVENIKAEAPAELPNNRPIDSKEKKEMTGGTSSELPKRPSS 117

Query: 118 SVLPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVD 177
           SVLPS+FFD Q AKR KT      D +++  SG  A++Q             +P  + ++
Sbjct: 118 SVLPSDFFD-QNAKRLKTGK----DIETDSRSGSIAQSQV------------IPKASDLN 160

Query: 178 AKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEY 237
                      +KS  +  SE KQIKGALPEGFFD+KEADL A GIK VKPDVKDEYKE+
Sbjct: 161 -----------KKSSMNAGSEGKQIKGALPEGFFDDKEADLRAHGIKLVKPDVKDEYKEF 209

Query: 238 EKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWEAASRSAKS 297
           EKLIQEDL++VDDR EEEEIDAAEMIEE E+++QK +RE+VE L++KK+E ++   + +S
Sbjct: 210 EKLIQEDLQEVDDRLEEEEIDAAEMIEEAETLEQKAYRERVELLKRKKIELKSKKSAEQS 269

Query: 298 RGSSEVARKEPTKEELSSDDDSEEI-FAVDWRAQHL 332
           R   ++  K+   +  SSDDD  +  + VDWRAQHL
Sbjct: 270 RAEPQIPTKDSQVDYSSSDDDDSDTNYTVDWRAQHL 305

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443180|ref|XP_002267521.1| PREDICTED: zinc finger protein 830-like [Vitis vinifera]

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 175/311 (56%), Positives = 219/311 (70%), Gaps = 17/311 (5%)

Query: 30  YNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNSRMVSDAAKPEAGR 89
           YNEFDQPVCRVCDV+LKS+S WDAHQASRKHHEAIKN+KA A G      ++ AKPEA  
Sbjct: 27  YNEFDQPVCRVCDVILKSESLWDAHQASRKHHEAIKNVKANAAG---LTRANNAKPEA-- 81

Query: 90  ESSRSESRSASQNAEIESSAKLGKARTSSVLPSNFFDSQEAKRPKT--DSVKLVDPDS-N 146
              + ES +   NA  E S  L KA+ SS LP++FFD+   K+ K+  D VK +DPDS N
Sbjct: 82  --PKPESSTVLSNATSEPSMNLQKAQLSSGLPADFFDNHVTKKQKSGNDDVKFLDPDSYN 139

Query: 147 KTSG-VSAKTQAMKSVVLENEMDELPNGNAVDAKKGQPLKEH----PEKSKQSVDSEAKQ 201
           KT G  SA+TQ+M+ +  +N +D L + ++   K G+    H     + S + V SE K+
Sbjct: 140 KTGGSASAQTQSMEPLESKNNLDGLSSSHS--EKMGKSGIRHARDLTQTSGKIVGSETKE 197

Query: 202 IKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFEEEEIDAAE 261
           +KGALPEGFFDNK+ADL ARGI PVKPDVKDEYKE+EKLIQEDLK+VD+R EEEE DAAE
Sbjct: 198 VKGALPEGFFDNKDADLRARGIVPVKPDVKDEYKEFEKLIQEDLKEVDNRLEEEEFDAAE 257

Query: 262 MIEEYESVDQKTFREKVEALRKKKMEWEAASRSAKSRGSSEVARKEPTKEELSSDDDSEE 321
           MIEE ESV+QK + EKVE L+KKK+E +AA    +S+      + + +K + SS DDS+ 
Sbjct: 258 MIEEAESVEQKVYWEKVEMLKKKKLELKAARSGRRSKDPEVRGKGQSSKGDSSSGDDSDG 317

Query: 322 IFAVDWRAQHL 332
            F VDWRAQHL
Sbjct: 318 NFTVDWRAQHL 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832920|ref|XP_002884342.1| hypothetical protein ARALYDRAFT_477529 [Arabidopsis lyrata subsp. lyrata] gi|297330182|gb|EFH60601.1| hypothetical protein ARALYDRAFT_477529 [Arabidopsis lyrata subsp. lyrata]

 Score =  270 bits (690), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 176/340 (51%), Positives = 225/340 (66%), Gaps = 35/340 (10%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FR+KLNA+KK+ RI+SPLVRYNE DQPVCRVC+VVLKS+S WD HQASRK
Sbjct: 1   MDAQAKKKAMFRSKLNAKKKDTRIDSPLVRYNESDQPVCRVCNVVLKSESLWDVHQASRK 60

Query: 60  HHEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSV 119
           HHEAI N+KA A G     V    KP        +E+R A    + E+ AK  K++TSS 
Sbjct: 61  HHEAIDNLKASAAG-----VQRGTKP--------AETRPA----KTEALAKSSKSQTSSG 103

Query: 120 LPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNG----NA 175
           LP NFF++ E  R +      V+P  +K    S +T   ++    N    LP G      
Sbjct: 104 LPPNFFENHEPARAE------VEPAISKNIEQSKQTIGSET---NNSKGPLPAGFFDNQK 154

Query: 176 VDAKKGQPLKEHPEKSKQSVDSEAKQI-KGALPEGFFDNKEADLLARGIKPVKPDVKDEY 234
            D+   +   E  +   Q+  SE K + KG LP GFFDNKEADLLARGIK VKPD+KDEY
Sbjct: 155 TDSSNTKTTSEPKQSQTQTTGSETKSVVKGNLPTGFFDNKEADLLARGIKLVKPDIKDEY 214

Query: 235 KEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWEAASRS 294
           KE+EKLIQ+DL+ VD R EEEE+DAAE IEE E  +Q++++EKVE L+++K E +AA R 
Sbjct: 215 KEFEKLIQDDLQVVDSRMEEEEVDAAETIEEEEQREQRSYKEKVEILKRRKRELKAA-RL 273

Query: 295 AKSRGSSEVARKEP--TKEELSSDDDSEEIFAVDWRAQHL 332
           AK   +SE + K+P  T+EE  SD++ +E  AVDWRAQHL
Sbjct: 274 AKRSKTSEGSVKKPKKTEEESLSDEEDDEDSAVDWRAQHL 313

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
TAIR|locus:2075422	313	AT3G02860 [Arabidopsis thalian	0.674	0.715	0.359	6e-32
MGI|MGI:1914233	363	Zfp830 "zinc finger protein 83	0.960	0.878	0.224	6.6e-14
UNIPROTKB|E2RNS2	371	ZNF830 "Uncharacterized protei	0.340	0.304	0.268	3.7e-12
RGD|1562573	370	Zfp830 "zinc finger protein 83	0.512	0.459	0.235	2.6e-11
UNIPROTKB|Q96NB3	372	ZNF830 "Zinc finger protein 83	0.228	0.204	0.263	3.8e-11
UNIPROTKB|I3L6H7	367	ZNF830 "Uncharacterized protei	0.192	0.174	0.307	1.3e-10
ZFIN|ZDB-GENE-040426-1834	326	zgc:77398 "zgc:77398" [Danio r	0.753	0.766	0.193	7.4e-06
UNIPROTKB|A3KN01	373	ZNF830 "Uncharacterized protei	0.674	0.600	0.224	2.1e-05
UNIPROTKB|F1NPL1	368	ZNF830 "Uncharacterized protei	0.5	0.451	0.238	0.0001

TAIR|locus:2075422 AT3G02860 [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 83/231 (35%), Positives = 120/231 (51%)

Query:   104 EIESSAKLGKARTSSVLPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVL 163
             +IE+ AK   ++TSS LP NFF+++E  R + +  K  + + +K + + ++T   K  + 
Sbjct:    88 KIEALAKSSNSQTSSGLPPNFFENREPARAEVEPAKSKNLEQSKHT-IGSETNKSKGPLP 146

Query:   164 ENEMDELPNGNAVDAKKGQPLKEHPEKSKQSVDSEAK-QIKGALPEGFFDNKEADLLARG 222
                 D        D+   +   E  +   Q+   E K  + G LP GFFDNKEADLLA G
Sbjct:   147 AGFFDN----QKTDSSNTKTTSEPKQSQTQTTGPETKPMVNGNLPTGFFDNKEADLLAHG 202

Query:   223 IKPVKPDVKDEYKEYEKLIQEDLKQVDDRFXXXXXXXXXXXXXXXSVDQKTFREKVEALR 282
             IK VKPD+KDEYKE+EKLIQ+DL+ VD R                  +Q++++EKVE L+
Sbjct:   203 IKLVKPDIKDEYKEFEKLIQDDLQVVDSRMEEEEVDAAETIEEEEQREQRSYKEKVEILK 262

Query:   283 KKKMEWEXXXXXXXXXXXX-EVARKEPTKXXXXXXXXXXXIFAVDWRAQHL 332
             +KKME +              V + + T+             AVDWRAQHL
Sbjct:   263 RKKMELKAARLAKRSKTSEGSVKKPKKTEEESPSDEEDDEDSAVDWRAQHL 313

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1914233 Zfp830 "zinc finger protein 830" [Mus musculus (taxid:10090)]

 Score = 195 (73.7 bits), Expect = 6.6e-14, P = 6.6e-14
 Identities = 77/343 (22%), Positives = 128/343 (37%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + R K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMREKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAE 81

Query:    67 IKA--GAT-GNNSRMVSDAAKPXXXXXXXXXXXXXXX------QNAEIESSAKLGKARTS 117
             +K   GAT G ++  V  A K                      Q +   SSA L  AR +
Sbjct:    82 LKGAKGATQGPSTGTVPQATKRRATDVESQDAKKAKASAGPQVQPSTSASSANLDAARAA 141

Query:   118 SVLPS----NFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNG 173
                P       +D +E +  +    +  D  S        K  ++ S   E   + LPN 
Sbjct:   142 PSKPGLGLLPDYDDEEEEEEEGGGEERRD-SSKHLPDAQGKEHSLASP-RETTSNVLPND 199

Query:   174 NAVDAKKGQPLKEHP---EKSK--QSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKP 228
                      PL  H    EK++  + V    +    ALPEGFFD+ E D   R +   K 
Sbjct:   200 PFNTNPPKAPLVPHSGSIEKAEIHEKVVERRENTAEALPEGFFDDPEVDAKVRKVDAPKD 259

Query:   229 DVKDEYKEYEKLIQEDLKQVDDRFXXXXXXXXXXXXXXXSVDQKT-FREKVEALRKKKME 287
              +  E+ E++K +++ +  + +                  +D++     +VE LR ++ E
Sbjct:   260 QMDKEWDEFQKAMRQ-VNTISEAIVAEEDEEGRLDRQIGEIDEQIECYRRVEKLRNRQDE 318

Query:   288 WEXXXXXXXXXXXXEVARKEPTKXXXXXXXXXXXIFAVDWRAQ 330
              +            E+ +KE              + + DWR +
Sbjct:   319 IKNKLKEVLTIK--ELQKKEEENVDSDDEGELQDLLSQDWRVK 359

GO:0000077 "DNA damage checkpoint" evidence=IMP

GO:0001832 "blastocyst growth" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005694 "chromosome" evidence=IEA

GO:0007049 "cell cycle" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016607 "nuclear speck" evidence=IDA

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0060729 "intestinal epithelial structure maintenance" evidence=IMP

UNIPROTKB|E2RNS2 ZNF830 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 119 (46.9 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
 Identities = 32/119 (26%), Positives = 54/119 (45%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAE 81

Query:    67 IKAGATGNNSRMVSDAAKPXXXXXXXXXXXXXXXQNAEIESSAKLGKARTS-SVLPSNF 124
             +K GA    ++  S +A P               Q+A+   ++ L + + S S LP+NF
Sbjct:    82 LK-GAR-EATQGPSSSAAPQSAKRKVPDADG---QDAKRLKASPLPQVQPSTSALPTNF 135

GO:0007049 "cell cycle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

RGD|1562573 Zfp830 "zinc finger protein 830" [Rattus norvegicus (taxid:10116)]

 Score = 124 (48.7 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
 Identities = 45/191 (23%), Positives = 74/191 (38%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAE 81

Query:    67 IKAGATGNNSRMVSDAAKPXXXXXXXXXXXXXXXQNAEIESS-AKLGKARTSSVLPSNFF 125
             +K             A +P               +  ++ES  AK  KA    V PS   
Sbjct:    82 LKGAKGATQGPSAGTAPQPTKR------------KTTDVESQDAKKAKASVDQVQPSTSA 129

Query:   126 DSQEAKRPKTDSVKLVDPDSNKTS-GVSAKTQAMKSVVLENEMDELPNGNAV-DAKKGQP 183
              S   ++   ++ ++    S+KT  G+    +  +    E E +EL  G    D+ K  P
Sbjct:   130 SSANFEKSGKEATRVA---SSKTGLGLLPDYEEEEE---EEEEEELGGGEERRDSSKHLP 183

Query:   184 LKEHPEKSKQS 194
               +  E S  S
Sbjct:   184 DAQGREHSLAS 194

GO:0000077 "DNA damage checkpoint" evidence=ISO

GO:0001832 "blastocyst growth" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0007049 "cell cycle" evidence=ISO

GO:0007067 "mitosis" evidence=IEA;ISO

GO:0016607 "nuclear speck" evidence=ISO

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0060729 "intestinal epithelial structure maintenance" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q96NB3 ZNF830 "Zinc finger protein 830" [Homo sapiens (taxid:9606)]

 Score = 114 (45.2 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
 Identities = 20/76 (26%), Positives = 33/76 (43%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTSRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAE 81

Query:    67 IKAGATGNNSRMVSDA 82
             +K     +     S A
Sbjct:    82 LKGAKEASQGSSASSA 97

GO:0007067 "mitosis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|I3L6H7 ZNF830 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 110 (43.8 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAE 81

Query:    67 IKAGA 71
             +K GA
Sbjct:    82 LK-GA 85

GO:0007049 "cell cycle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

ZFIN|ZDB-GENE-040426-1834 zgc:77398 "zgc:77398" [Danio rerio (taxid:7955)]

 Score = 129 (50.5 bits), Expect = 7.4e-06, P = 7.4e-06
 Identities = 52/269 (19%), Positives = 102/269 (37%)

Query:    19 KEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNSRM 78
             ++KR+ SP  RY+   Q +C +CD  +K+   W  H   ++H + ++ +K+     ++  
Sbjct:    31 RQKRVESPFARYSGAGQLMCALCDAPVKNALLWQTHVLGKQHKDKLQELKSRTAPAHTP- 89

Query:    79 VSDAAKPXXXXXXXXXXXXXXXQNAEIESS-AKLGKARTSSVLPSNFFDSQEAKRPKTDS 137
              + A  P               + AE   +  K  K +T +                 D 
Sbjct:    90 -APAHTPAHTPAAASSSSSTLKRAAEPPPAPGKRAKLQTGAGAGLGLLAGHY------DD 142

Query:   138 VKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKKGQPLKEHPEKSKQSVDS 197
                 D D    +G         S +  +  D  P      +  G   K   ++S++  ++
Sbjct:   143 ----DDDDEGGAGERKTAPPTDSALPADFFDSGPAPAPPISHSGSVSKAEQQESQEPPEN 198

Query:   198 EAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFXXXXX 257
               +    +LPEGFFD+   D   R +   K  ++ E++E++K +++ +    D       
Sbjct:   199 RPE----SLPEGFFDDPVRDAQVRQVDTPKDQLEREWEEFQKEMRQ-VNSASDAIVAEDD 253

Query:   258 XXXXXXXXXXSVD-QKTFREKVEALRKKK 285
                        ++ Q     +VE LR K+
Sbjct:   254 EEGRLERQMDEIEEQMQCLRRVEELRAKQ 282

GO:0046872 "metal ion binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

UNIPROTKB|A3KN01 ZNF830 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 126 (49.4 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 55/245 (22%), Positives = 99/245 (40%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAE 81

Query:    67 IKAGATGNNSRMVSDAAKPXXXXXXXXXXXXXXXQNAEIESSAKLGKARTS-SVLPSNFF 125
             +K GA    ++  S +A P               Q+A+   ++ + + + S S LP+NF 
Sbjct:    82 LK-GAK-EAAQGPSASAVPQSTKRKAPDSES---QDAKRAKASLVPQVQPSTSALPTNF- 135

Query:   126 DSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKKGQPLK 185
                +A +  T +         K SG+            E+E +E   G     K     +
Sbjct:   136 --DKAGKESTRATV------GKASGLGLLPDYDDE---EDEEEEKGGGGGEGKKGDACKQ 184

Query:   186 EHPEKSKQSVDSEAKQIKGA-LPEGFFDNK--EADLLARGIKPVKPDVKDEYKEYEKLIQ 242
                 +SK+   S +++  G+ LP  F D    +A L+       K ++ ++  E  +   
Sbjct:   185 PSTSQSKEHSLSSSREATGSRLPSNFSDTNPPKAPLIPHSGSIEKAEIHEKVVERRENTA 244

Query:   243 EDLKQ 247
             E L +
Sbjct:   245 EALPE 249

GO:0007049 "cell cycle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

UNIPROTKB|F1NPL1 ZNF830 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
 Identities = 43/180 (23%), Positives = 69/180 (38%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAI-- 64
             + + R K      +KRI SP  +Y       C +C   +KS+  W  H   ++H E +  
Sbjct:    22 RRLMREKKRQNADKKRIESPFAKYPRLGHLSCTLCSAPVKSELLWQTHVLGKQHRERVAE 81

Query:    65 -KNIKAGATGNNSRMVSDAAKPXXXXXXXXXXXXXXXQNAEIESSAKLGKARTSSVLPSN 123
              K  K  A+G+ +   S A K                 + +  +S       ++S LP++
Sbjct:    82 LKGAKQAASGSAAGASSHAVKRKTADAESTQLKRSKGTDDKPHTST------STSGLPAD 135

Query:   124 FFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKKGQP 183
             FFD  E        +K   P  +  SG        +    E E D+ PN ++V  K   P
Sbjct:   136 FFDESEQNNANKQFLK--GPGPSLLSGNYDDDDEEEEE--EEEQDQ-PNTSSVMHKTEIP 190


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.126   0.347    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      332       279   0.00081  115 3  11 23  0.45    34
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  191 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.19u 0.17s 28.36t   Elapsed:  00:00:02
  Total cpu time:  28.19u 0.17s 28.36t   Elapsed:  00:00:02
  Start:  Mon May 20 23:21:22 2013   End:  Mon May 20 23:21:24 2013

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00002209 hypothetical protein (331 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	332
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	6e-06
pfam12171	27	pfam12171, zf-C2H2_jaz, Zinc-finger double-strande	0.001
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	0.001

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 41.7 bits (99), Expect = 6e-06
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38 CRVCDVVLKSDSQWDAHQASRKH 60
          C +C+V   S+SQ  +H   +KH
Sbjct: 3  CELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 35 QPVCRVCDVVLKSDSQWDAHQASRKH 60
          Q  C  CD   KS++  + H  S+KH
Sbjct: 1  QFYCVACDKYFKSENALENHLKSKKH 26

This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. Length = 27

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 30/230 (13%), Positives = 64/230 (27%), Gaps = 9/230 (3%)

Query: 103  AEIESSAKLGKARTSSVLPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVV 162
             EI    +L                +  K+ K       D     +   ++K        
Sbjct: 1150 KEIAKEQRLKSKTKGKASKLR--KPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKR 1207

Query: 163  LENEMDELPNGNAV------DAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEA 216
              ++  +    N+       D ++    K+   K  +S  + + +      E   D+   
Sbjct: 1208 KLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSK 1267

Query: 217  DLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFRE 276
            +   +        V+       K    +           +    + +E   +  +K  + 
Sbjct: 1268 EGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKS 1327

Query: 277  KVEALRKKKMEWEAASRSAKSRGSSEVARKEPTKEELSSDDDSEEIFAVD 326
            + +  RKKK +      SA         R    K + SS+DD +      
Sbjct: 1328 EKKTARKKKSKTRVKQASASQSSRLL-RRPRKKKSDSSSEDDDDSEVDDS 1376

Length = 1388

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	332
KOG3032	264	consensus Uncharacterized conserved protein [Funct	100.0
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	97.9
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.52
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	96.76
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	96.71
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.67
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	96.01
PLN02748	468	tRNA dimethylallyltransferase	94.45
KOG4727	193	consensus U1-like Zn-finger protein [General funct	88.51
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	88.38
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	86.46

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=4e-60  Score=436.93  Aligned_cols=260  Identities=43%  Similarity=0.667  Sum_probs=196.8

Q ss_pred             HHHHhHHHHHHHHHHhhhhcccCcccccCCCCCceeecccccccCcchhHHhhCChHHHHHHHHHhhhhcCCCCCCCCCC
Q 020054            3 AARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNSRMVSDA   82 (332)
Q Consensus         3 ~~~~ka~~R~llr~~~~~~rI~~P~A~Yn~~GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk~~~~~~~~~~~~~~   82 (332)
                      .+++|+|||++|+..+...||++|||+||.+|||+|+|||++|| ++||++|++||+||++|..||.....        .
T Consensus         3 q~~~krl~k~k~~~kk~~~ri~splakyn~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs~~~K--------v   73 (264)
T KOG3032|consen    3 QAKKKRLFKSKLNAKKKDTRIDSPLAKYNESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKSRGSK--------V   73 (264)
T ss_pred             hHHHHHHHHHHhhccCcccccccHhhccCCCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHhhhcc--------c
Confidence            48999999999999999999999999999999999999999999 99999999999999999999931111        1


Q ss_pred             CCCCCCCCCCCCCCcccchhhhhhhhhhcccCCCCCCCCCcccCccccCCCCCCCccccCCCCCCCcCCccccccccchh
Q 020054           83 AKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSVLPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVV  162 (332)
Q Consensus        83 a~~~~~~~~~k~~~~~~~~~k~~k~~~~~~~~~~~S~LP~dFFd~~~~~~~~~~~~~l~d~d~~~~~g~~~~t~~~~~~~  162 (332)
                      +++.+   .+-+..+.++..+..     .-+.+.+|.||.+||+....+...               |.+.++       
T Consensus        74 ~k~~~---T~~p~~p~spn~kts-----~~pnk~pstlPdk~~~~eqekh~~---------------gd~e~k-------  123 (264)
T KOG3032|consen   74 AKTRP---TKIPALPKSPNSKTS-----FFPNKEPSTLPDKSKNLEQEKHTI---------------GDEENK-------  123 (264)
T ss_pred             ccCcC---ccCccCCCCCCcccc-----ccCCCCCCcCCCCCcchhcccCCC---------------Cccchh-------
Confidence            11111   111111100111110     011223588999999876443321               111111       


Q ss_pred             hhccccCCCCCCccccCCCCCCCCCCccccccchhhhhhhcCCCCCCCCCChhhhhhhhcCCCCCCChHHHHHHHHHHHH
Q 020054          163 LENEMDELPNGNAVDAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQ  242 (332)
Q Consensus       163 ~e~~~~~Lp~~~~~~~~~~~~~~~~s~s~~k~~~~E~k~~~~~LPEGFFDD~~~DakaR~v~~~k~~~e~Ew~eFqKeI~  242 (332)
                         ..|     +|++    +|              ++.++.++||+|||||++.|+.||+|..++++|++||++||++|+
T Consensus       124 ---aqG-----nfs~----~p--------------enent~e~lPegFFDdke~d~~vr~~~e~k~~~d~Ey~rfqkeI~  177 (264)
T KOG3032|consen  124 ---AQG-----NFSN----QP--------------ENENTNENLPEGFFDDKEADLLVRGIKEVKPDIDDEYKRFQKEIQ  177 (264)
T ss_pred             ---ccc-----cccC----Cc--------------cccchhhcCcccccCchhhhhhhhhccccchhHHHHHHHHHHHHH
Confidence               112     2222    11              345689999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccccccCCCcccCCCCCchhhh
Q 020054          243 EDLKQVDDRFEEEEIDAAEMIEEYESVDQKTFREKVEALRKKKMEWEAASRSAKSRGSSEVARKEPTKEELSSDDDSEEI  322 (332)
Q Consensus       243 ee~~es~~~~Eeee~~~~~ere~~eidEQi~~~~RV~~L~~kk~e~~~~~~~~~~~~~~~~~~~~~~~~~sssdde~d~d  322 (332)
                      +++++++.|+||++++++..|++.||+|||.||+||+.|+.++++++.+.+.++.+.  ++..   ..++|++|.|++++
T Consensus       178 ~~~tesd~iveEeeed~~l~reieeidEQi~~~kkvekl~~qK~ellnkkRe~~~k~--ev~k---e~eesddDgeddDl  252 (264)
T KOG3032|consen  178 DDLTESDSIVEEEEEDAALTREIEEIDEQISYKKKVEKLKRQKMELLNKKREKTSKG--EVKK---EEEESDDDGEDDDL  252 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--ccCc---ccccCccccchhhh
Confidence            999999999999999999999999999999999999999999999998765554442  1111   13666666777778


Q ss_pred             hhhhccccCC
Q 020054          323 FAVDWRAQHL  332 (332)
Q Consensus       323 ~~~DWRaK~~  332 (332)
                      +++|||+|||
T Consensus       253 ~a~DWRaKnl  262 (264)
T KOG3032|consen  253 SAVDWRAKNL  262 (264)
T ss_pred             hhhhhhhhhc
Confidence            8889999996

>smart00451 ZnF_U1 U1-like zinc finger

Probab=97.90  E-value=6.9e-06  Score=54.39  Aligned_cols=33  Identities=24%  Similarity=0.590  Sum_probs=30.9

Q ss_pred             CCceeecccccccCcchhHHhhCChHHHHHHHH
Q 020054           34 DQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN   66 (332)
Q Consensus        34 GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~   66 (332)
                      |...|.+|+..+.++..|..|+.|+.|+.++.+
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            678999999999999999999999999999875

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.52  E-value=3.9e-05  Score=48.93  Aligned_cols=27  Identities=37%  Similarity=0.642  Sum_probs=25.1

Q ss_pred             CceeecccccccCcchhHHhhCChHHH
Q 020054           35 QPVCRVCDVVLKSDSQWDAHQASRKHH   61 (332)
Q Consensus        35 qL~C~lC~~~vksEslW~aH~~Sk~Hr   61 (332)
                      |..|.+|+..+.++..|..|+.|+.||
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence            568999999999999999999999997

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=96.76  E-value=0.0019  Score=59.73  Aligned_cols=66  Identities=14%  Similarity=0.255  Sum_probs=50.9

Q ss_pred             HHhHHHHHHHHHHhhhhcccCcccccCCCCCceeecccccccCcchhHHhhCChHHHHHHHHHhhhhc
Q 020054            5 RKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGAT   72 (332)
Q Consensus         5 ~~ka~~R~llr~~~~~~rI~~P~A~Yn~~GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk~~~~   72 (332)
                      +|+.-++.|+-.-  .---+.||..-|.+|++.|.||+..-.+|+-.-.|..+|+|.+|+.+...++.
T Consensus        25 ~rR~r~~~L~~~g--qDl~dDPyl~knh~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rrs~eks   90 (222)
T COG5246          25 KRRSRQLLLEAYG--QDLMDDPYLSKNHTGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRRSEEKS   90 (222)
T ss_pred             HHHHHHHHHHhcC--cccccCcchhhcCCCcEEeeeeccccccHHHHHHhhccchhhhhHHHHHHHhh
Confidence            4444444444322  12345699999999999999999998999999999999999999999755443

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.71  E-value=0.00091  Score=68.75  Aligned_cols=35  Identities=31%  Similarity=0.633  Sum_probs=33.9

Q ss_pred             ceeecccccccCcchhHHhhCChHHHHHHHHHhhh
Q 020054           36 PVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAG   70 (332)
Q Consensus        36 L~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk~~   70 (332)
                      |.|.+||...|+|..|.-|..||+|+++|+.|+++
T Consensus       293 lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrqe  327 (508)
T KOG0717|consen  293 LYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQE  327 (508)
T ss_pred             eEEeeccccccchHHHHhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999874

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.67  E-value=0.00087  Score=41.40  Aligned_cols=25  Identities=28%  Similarity=0.603  Sum_probs=23.7

Q ss_pred             ceeecccccccCcchhHHhhCChHH
Q 020054           36 PVCRVCDVVLKSDSQWDAHQASRKH   60 (332)
Q Consensus        36 L~C~lC~~~vksEslW~aH~~Sk~H   60 (332)
                      +.|.+|++...++..|..|+.|+.|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            4699999999999999999999998

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=96.01  E-value=0.0077  Score=56.08  Aligned_cols=64  Identities=16%  Similarity=0.292  Sum_probs=50.4

Q ss_pred             HHHhHHHHHHHHHHhhhhcccCcccccCCCCCceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 020054            4 ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (332)
Q Consensus         4 ~~~ka~~R~llr~~~~~~rI~~P~A~Yn~~GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk~   69 (332)
                      ..|+--+|.|+-..-.  --..||.--|-.|.+.|.||+..-.+|.-.-+|..+|+|.+||++.-+
T Consensus        24 ~~RrerlrqLaletid--l~kDPy~mkNh~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarraa   87 (222)
T KOG0227|consen   24 RDRRERLRQLALETID--LNKDPYFMKNHLGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAA   87 (222)
T ss_pred             HHHHHHHHHHHHhhcc--cccCchhhhccCcceeehhhhhhhcchhhhhhhhccchhhHHHHHHHH
Confidence            3455556666554311  123599999999999999999999999999999999999999998544

>PLN02748 tRNA dimethylallyltransferase

Probab=94.45  E-value=0.025  Score=58.44  Aligned_cols=37  Identities=30%  Similarity=0.729  Sum_probs=32.5

Q ss_pred             CCceeecccc-cccCcchhHHhhCChHHHHHHHHHhhh
Q 020054           34 DQPVCRVCDV-VLKSDSQWDAHQASRKHHEAIKNIKAG   70 (332)
Q Consensus        34 GqL~C~lC~~-~vksEslW~aH~~Sk~Hr~~~~~lk~~   70 (332)
                      -+.+|-+|+. ++..|--|..|+.|+.||.++.++++.
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k~  454 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQK  454 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHhh
Confidence            3457999997 799999999999999999999988763

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=88.51  E-value=0.55  Score=43.34  Aligned_cols=41  Identities=22%  Similarity=0.360  Sum_probs=34.8

Q ss_pred             cccccCCCCCceeecccccccCcchhHHhhCChHHHHHHHH
Q 020054           26 PLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN   66 (332)
Q Consensus        26 P~A~Yn~~GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~   66 (332)
                      +-+.-+..|..-|-||+.+||.=.-+=-||++|.|.-|+..
T Consensus        66 k~tp~sq~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgm  106 (193)
T KOG4727|consen   66 KSTPRSQKGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGM  106 (193)
T ss_pred             cCCcccccCceeeeecceeehhhHHHHHHhccHHHHHHHhh
Confidence            34445677889999999999987778899999999999875

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=88.38  E-value=0.23  Score=43.42  Aligned_cols=38  Identities=16%  Similarity=0.284  Sum_probs=35.3

Q ss_pred             CCCCceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 020054           32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (332)
Q Consensus        32 ~~GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk~   69 (332)
                      ..||-.|+.|.-..=++..-..|..+|.|+.+|..|+.
T Consensus        54 G~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~   91 (129)
T KOG3408|consen   54 GGGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELRE   91 (129)
T ss_pred             CCceeehhhhhhhhcchHHHHHHHhccHHHHHHHhccc
Confidence            67999999999998899999999999999999998874

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.46  E-value=0.56  Score=32.79  Aligned_cols=31  Identities=32%  Similarity=0.520  Sum_probs=19.1

Q ss_pred             ceeecccccccCcc--hhHHhhCChHHHHHHHH
Q 020054           36 PVCRVCDVVLKSDS--QWDAHQASRKHHEAIKN   66 (332)
Q Consensus        36 L~C~lC~~~vksEs--lW~aH~~Sk~Hr~~~~~   66 (332)
                      --|-.|+.-|.+.+  .|..|..|.+|++|+..
T Consensus         4 yyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~   36 (38)
T PF06220_consen    4 YYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR   36 (38)
T ss_dssp             -B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred             eecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence            35999999995444  79999999999999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	332
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.47
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	94.88
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	94.14
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.09
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	83.66
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	80.67

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.47  E-value=0.0016  Score=54.22  Aligned_cols=37  Identities=19%  Similarity=0.377  Sum_probs=33.9

Q ss_pred             CCCCceeecccccccCcchhHHhhCChHHHHHHHHHh
Q 020054           32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK   68 (332)
Q Consensus        32 ~~GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk   68 (332)
                      ..+.+.|.+|++.+.++..+..|+.||.|+.++.++.
T Consensus        90 ~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~~  126 (127)
T 1zu1_A           90 EDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE  126 (127)
T ss_dssp             CCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             CCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHhc
Confidence            4678899999999999999999999999999998763

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=94.88  E-value=0.012  Score=49.77  Aligned_cols=40  Identities=15%  Similarity=0.290  Sum_probs=36.4

Q ss_pred             cCCCCCceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 020054           30 YNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (332)
Q Consensus        30 Yn~~GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk~   69 (332)
                      .+..|+..|..|+....+++.+..|.+||.|+.++..++.
T Consensus        45 ~tGekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~   84 (124)
T 1zr9_A           45 LPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   84 (124)
T ss_dssp             SGGGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CCCCcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhcc
Confidence            3456899999999999999999999999999999999874

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=94.14  E-value=0.021  Score=47.44  Aligned_cols=35  Identities=43%  Similarity=0.624  Sum_probs=32.4

Q ss_pred             CceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 020054           35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (332)
Q Consensus        35 qL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk~   69 (332)
                      .+.|.+|++.+.+++.-.+|..|+.|+.+|..+..
T Consensus        32 ~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~   66 (127)
T 1zu1_A           32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA   66 (127)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhc
Confidence            48999999999999999999999999999987655

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.09  E-value=0.025  Score=56.04  Aligned_cols=37  Identities=27%  Similarity=0.548  Sum_probs=31.9

Q ss_pred             CCceeecccc------cccCcchhHHhhCChHHHHHHHHHhhh
Q 020054           34 DQPVCRVCDV------VLKSDSQWDAHQASRKHHEAIKNIKAG   70 (332)
Q Consensus        34 GqL~C~lC~~------~vksEslW~aH~~Sk~Hr~~~~~lk~~   70 (332)
                      -+-+|-+|+.      ++-.|--|..|+.|+.||.++.+.++-
T Consensus       359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k~  401 (409)
T 3eph_A          359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQ  401 (409)
T ss_dssp             CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred             cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHHH
Confidence            3458999997      788889999999999999999887653

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=83.66  E-value=0.67  Score=34.22  Aligned_cols=35  Identities=20%  Similarity=0.448  Sum_probs=29.3

Q ss_pred             CceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 020054           35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (332)
Q Consensus        35 qL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk~   69 (332)
                      ++.|.+|++.--+-.--..||.|++|-.+|..+-.
T Consensus        13 ~~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~v~   47 (55)
T 2yrk_A           13 KPECTLCGVKYSARLSIRDHIFSKQHISKVRETVG   47 (55)
T ss_dssp             CSCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTTC
T ss_pred             CccccccCcccccccchhhhhccHHHHHHHHHHHH
Confidence            48999999987766778899999999999876544

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=80.67  E-value=0.91  Score=35.49  Aligned_cols=32  Identities=38%  Similarity=0.623  Sum_probs=27.0

Q ss_pred             ceeecccccccCc--chhHHhhCChHHHHHHHHH
Q 020054           36 PVCRVCDVVLKSD--SQWDAHQASRKHHEAIKNI   67 (332)
Q Consensus        36 L~C~lC~~~vksE--slW~aH~~Sk~Hr~~~~~l   67 (332)
                      --|--|+.-|.+.  +.|..|+.|++|+.|+...
T Consensus         4 YyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~y   37 (77)
T 3cw1_L            4 FYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (77)
T ss_pred             cccccCCceecCCCHHHHHHHHccHHHHHHHHHH
Confidence            4699999999555  4589999999999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	332
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	97.64
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	93.74
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	92.2

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=1e-05  Score=60.31  Aligned_cols=38  Identities=16%  Similarity=0.313  Sum_probs=35.8

Q ss_pred             CCCCceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 020054           32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (332)
Q Consensus        32 ~~GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk~   69 (332)
                      ..||.-|++|+...+++..|..|..||+|+.+|.+|+.
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~   49 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   49 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CCCEEecccccCccCCHHHHHHHHcccHHHHHHHHhcc
Confidence            46999999999999999999999999999999999965

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=93.74  E-value=0.016  Score=41.12  Aligned_cols=32  Identities=19%  Similarity=0.433  Sum_probs=29.3

Q ss_pred             ceeecccccccCcchhHHhhCChHHHHHHHHH
Q 020054           36 PVCRVCDVVLKSDSQWDAHQASRKHHEAIKNI   67 (332)
Q Consensus        36 L~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~l   67 (332)
                      -.|.|||+..-+..+=..|..||.|..++...
T Consensus        22 k~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~   53 (55)
T d1zu1a2          22 KCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR   53 (55)
T ss_dssp             TEETTTTEECSSHHHHHHHHTSHHHHHHHHHH
T ss_pred             hhhhhhhcccCCHHHHHHHhhhhHHHHHHHHh
Confidence            48999999999999999999999999998654

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=92.20  E-value=0.033  Score=41.23  Aligned_cols=34  Identities=41%  Similarity=0.619  Sum_probs=31.3

Q ss_pred             CceeecccccccCcchhHHhhCChHHHHHHHHHh
Q 020054           35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK   68 (332)
Q Consensus        35 qL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk   68 (332)
                      ...|-+|++++-+||---+|--|++|..+|..+-
T Consensus        32 d~~CkvC~a~L~seSQriaHYeskkHa~kvr~yf   65 (72)
T d1zu1a1          32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYM   65 (72)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3789999999999999999999999999998754