Citrus Sinensis ID: 020055

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQITWLSAGQGGFSL
cHHHHHHHHHHHccccEEEEEEccccccccccEEEcccccccccccEEEEEccccccccccccEEEccccccEEEccccccccccccEEEEEEEEEEcccccccccEEEEEccccccccccccccEEEEEccccccccccEEEEEEEcccccccccccccccccccccEEEEEEcccccEEEEEccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEccccccccc
cHHHHHHHHHHHHccccEEEEEEEccccccccEEEEccccccccccEEEEEcccccccccccccEEccccEEEEEEEcccccccccccEEEEEEEEEccccccccEEEEEccccccHHHccccccEEEEEccccccccccEEEEEEEEcccccEEEEEEcccccccEEEEEEEEcccccEEEEEcccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccEEEEEEEEHEEHccccccccc
MMLKLLVLFLFFQISVSEIFFeerfddgwrsrwvisdwkrsegkagyfkhtagkwhgdpddkgiqthTDARHYAISakipefsnknrTLVVQYSIRFEQDIECGGGYIKLLSAYVNQkkfggdapyslmfgpdicgtqkKHLHVILSYqgqnypikkelecetdKLTHFYTfilrpdasysilidnrerdsgsmytdwdilpprkikavnakkpadwddreyiddpnavkpegydsipkeipdpkakkpdnwdededglwkppkipnpaykgpwrpkriknpnykgkwkipyidnpefeddpdlyvlkpikyVGIEVWQITWlsagqggfsl
MMLKLLVLFLFFQISVSEIFFeerfddgwrsRWVISDWKRSEGKAGYFKhtagkwhgdpddKGIQTHTDARHYAIsakipefsnknrTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTfilrpdasysILIDNRerdsgsmytdwdilpprkikavnakkpadwddreyiddpnavkpegydsipkeipdpkakkpdnwdededglwkppkipnpaykgpwrpkriknpnykgkwkIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQITWlsagqggfsl
MMlkllvlflffQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQITWLSAGQGGFSL
**LKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVN***************************************************************W***RIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQITWLSA*******
MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKI*********DWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQITWLSA*QG****
MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPK***********DGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQITWLSAGQGGFSL
MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQITWLSA*******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiii
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MMLKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQITWLSAGQGGFSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query332 2.2.26 [Sep-21-2011]
O04153424 Calreticulin-3 OS=Arabido yes no 0.954 0.747 0.793 1e-153
Q40401416 Calreticulin OS=Nicotiana N/A no 0.957 0.764 0.645 1e-118
P93508415 Calreticulin OS=Ricinus c N/A no 0.924 0.739 0.657 1e-117
O04151425 Calreticulin-1 OS=Arabido no no 0.948 0.741 0.641 1e-116
Q38858424 Calreticulin-2 OS=Arabido no no 0.957 0.75 0.628 1e-116
Q9ZPP1416 Calreticulin OS=Berberis N/A no 0.945 0.754 0.657 1e-115
O81919416 Calreticulin OS=Beta vulg N/A no 0.924 0.737 0.644 1e-114
Q9XF98421 Calreticulin OS=Prunus ar N/A no 0.909 0.717 0.662 1e-114
Q9SLY8424 Calreticulin OS=Oryza sat no no 0.912 0.714 0.633 1e-111
Q9SP22420 Calreticulin OS=Zea mays N/A no 0.912 0.721 0.620 1e-107
>sp|O04153|CALR3_ARATH Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=2 SV=2 Back     alignment and function desciption
 Score =  541 bits (1393), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 258/325 (79%), Positives = 287/325 (88%), Gaps = 8/325 (2%)

Query: 4   KLLVLFLFFQISV--------SEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKW 55
           KL     FF +SV        SEIF EE F+ GW+SRWV+SDWKR+EGKAG FKHTAGKW
Sbjct: 7   KLSFFCFFFLVSVLTLAPLAFSEIFLEEHFEGGWKSRWVLSDWKRNEGKAGTFKHTAGKW 66

Query: 56  HGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYV 115
            GDPD+KGIQT+ DA+HYAISAKIPEFSNKNRTLVVQYS++ EQDIECGG YIKLLS YV
Sbjct: 67  PGDPDNKGIQTYNDAKHYAISAKIPEFSNKNRTLVVQYSVKIEQDIECGGAYIKLLSGYV 126

Query: 116 NQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILR 175
           NQK+FGGD PYSLMFGPDICGTQ K LHVI+SYQGQNYPIKK+L+CETDKL HFYTFILR
Sbjct: 127 NQKQFGGDTPYSLMFGPDICGTQTKKLHVIVSYQGQNYPIKKDLQCETDKLNHFYTFILR 186

Query: 176 PDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD 235
           PDASYS+L+DN+ER+ GSMYTDWDILPPRKIK  NAKKP DWDDREYIDDPN VKPEG+D
Sbjct: 187 PDASYSVLVDNKEREFGSMYTDWDILPPRKIKVKNAKKPEDWDDREYIDDPNDVKPEGFD 246

Query: 236 SIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDN 295
           SIP+EIPD KAK+P++WDE+E+GLW+PPKIPN AYKGPW+ KRIKNPNYKGKWK P+IDN
Sbjct: 247 SIPREIPDRKAKEPEDWDEEENGLWEPPKIPNSAYKGPWKAKRIKNPNYKGKWKNPWIDN 306

Query: 296 PEFEDDPDLYVLKPIKYVGIEVWQI 320
           PEFEDDPDLYVLK IKY GIEVWQ+
Sbjct: 307 PEFEDDPDLYVLKSIKYAGIEVWQV 331
Molecular calcium-binding chaperone promoting folding, oligomeric assembly and quality control in the ER via the calreticulin/calnexin cycle. This lectin may interact transiently with almost all of the monoglucosylated glycoproteins that are synthesized in the ER.
Arabidopsis thaliana (taxid: 3702)
>sp|Q40401|CALR_NICPL Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1 Back     alignment and function description
>sp|P93508|CALR_RICCO Calreticulin OS=Ricinus communis PE=2 SV=1 Back     alignment and function description
>sp|O04151|CALR1_ARATH Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=1 SV=1 Back     alignment and function description
>sp|Q38858|CALR2_ARATH Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=1 SV=3 Back     alignment and function description
>sp|Q9ZPP1|CALR_BERST Calreticulin OS=Berberis stolonifera PE=2 SV=1 Back     alignment and function description
>sp|O81919|CALR_BETVU Calreticulin OS=Beta vulgaris PE=2 SV=1 Back     alignment and function description
>sp|Q9XF98|CALR_PRUAR Calreticulin OS=Prunus armeniaca PE=2 SV=1 Back     alignment and function description
>sp|Q9SLY8|CALR_ORYSJ Calreticulin OS=Oryza sativa subsp. japonica GN=Os07g0246200 PE=1 SV=2 Back     alignment and function description
>sp|Q9SP22|CALR_MAIZE Calreticulin OS=Zea mays GN=CRT PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query332
255547520423 calreticulin, putative [Ricinus communis 0.963 0.756 0.866 1e-165
224146178421 predicted protein [Populus trichocarpa] 0.963 0.760 0.85 1e-160
217074662393 unknown [Medicago truncatula] 0.957 0.809 0.828 1e-159
357507831421 Calreticulin-3 [Medicago truncatula] gi| 0.957 0.755 0.828 1e-158
356545437418 PREDICTED: calreticulin-3-like [Glycine 0.921 0.732 0.869 1e-157
255638717408 unknown [Glycine max] 0.951 0.774 0.822 1e-157
356566955421 PREDICTED: calreticulin-3-like, partial 0.951 0.750 0.825 1e-157
224093048424 predicted protein [Populus trichocarpa] 0.960 0.752 0.822 1e-156
297735242 448 unnamed protein product [Vitis vinifera] 0.912 0.676 0.867 1e-156
356538879419 PREDICTED: calreticulin-3-like [Glycine 0.921 0.730 0.856 1e-156
>gi|255547520|ref|XP_002514817.1| calreticulin, putative [Ricinus communis] gi|223545868|gb|EEF47371.1| calreticulin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 278/321 (86%), Positives = 302/321 (94%), Gaps = 1/321 (0%)

Query: 1   MMLKLLVLF-LFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDP 59
            ++KLL +F LF Q SV+EI FEE+FDDGW+SRWV SDWKRSEGKAG FKHTAGKW GDP
Sbjct: 12  TLIKLLPVFCLFVQFSVAEIIFEEKFDDGWQSRWVRSDWKRSEGKAGTFKHTAGKWSGDP 71

Query: 60  DDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKK 119
           DDKGIQT  DA+H+AISAKIPEFSNKNRTLV+QYSIRFEQDIECGGGYIKLLS +VNQKK
Sbjct: 72  DDKGIQTTNDAKHFAISAKIPEFSNKNRTLVLQYSIRFEQDIECGGGYIKLLSGFVNQKK 131

Query: 120 FGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDAS 179
           FGGD PYSLMFGPDICGTQKKHLHVILSYQGQNYPI+KELECETDKLTHFYTFILRPDAS
Sbjct: 132 FGGDTPYSLMFGPDICGTQKKHLHVILSYQGQNYPIRKELECETDKLTHFYTFILRPDAS 191

Query: 180 YSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPK 239
           YSILID RERDSGSMYTDWDILPP+KI+   AKKPADWDDREYIDDPNAVKPEGYD IPK
Sbjct: 192 YSILIDGRERDSGSMYTDWDILPPKKIRDTKAKKPADWDDREYIDDPNAVKPEGYDKIPK 251

Query: 240 EIPDPKAKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFE 299
           EIPDP A++PD+WD++E+G+W+PPKIPNPAYKGPWRPKRIKNPNYKGKWK+PYIDNPEFE
Sbjct: 252 EIPDPNAREPDDWDDEENGIWRPPKIPNPAYKGPWRPKRIKNPNYKGKWKVPYIDNPEFE 311

Query: 300 DDPDLYVLKPIKYVGIEVWQI 320
           DDPDLYVLKPIKYVG+EVWQ+
Sbjct: 312 DDPDLYVLKPIKYVGVEVWQV 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224146178|ref|XP_002325909.1| predicted protein [Populus trichocarpa] gi|222862784|gb|EEF00291.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|217074662|gb|ACJ85691.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|357507831|ref|XP_003624204.1| Calreticulin-3 [Medicago truncatula] gi|355499219|gb|AES80422.1| Calreticulin-3 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356545437|ref|XP_003541149.1| PREDICTED: calreticulin-3-like [Glycine max] Back     alignment and taxonomy information
>gi|255638717|gb|ACU19663.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356566955|ref|XP_003551690.1| PREDICTED: calreticulin-3-like, partial [Glycine max] Back     alignment and taxonomy information
>gi|224093048|ref|XP_002309786.1| predicted protein [Populus trichocarpa] gi|222852689|gb|EEE90236.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297735242|emb|CBI17604.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356538879|ref|XP_003537928.1| PREDICTED: calreticulin-3-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query332
TAIR|locus:2201816424 CRT3 "calreticulin 3" [Arabido 0.924 0.724 0.820 3e-149
UNIPROTKB|P93508415 P93508 "Calreticulin" [Ricinus 0.924 0.739 0.657 1.2e-122
TAIR|locus:2010723425 CRT1a "calreticulin 1a" [Arabi 0.915 0.715 0.651 4.7e-119
TAIR|locus:2195326424 CRT1b "calreticulin 1b" [Arabi 0.924 0.724 0.641 6e-119
UNIPROTKB|Q9SLY8424 LOC_Os07g14270 "Calreticulin" 0.912 0.714 0.633 1.8e-117
DICTYBASE|DDB_G0283539424 crtA "calreticulin" [Dictyoste 0.918 0.719 0.511 8.7e-95
ZFIN|ZDB-GENE-000208-17418 calr "calreticulin" [Danio rer 0.912 0.724 0.525 1.1e-92
ZFIN|ZDB-GENE-030131-9907417 calrl "calreticulin like" [Dan 0.903 0.719 0.527 3.5e-91
ZFIN|ZDB-GENE-030131-4042419 calrl2 "calreticulin, like 2" 0.903 0.715 0.514 1.5e-90
UNIPROTKB|Q7Z1E6398 crt "Calreticulin" [Bombyx mor 0.903 0.753 0.521 5.9e-89
TAIR|locus:2201816 CRT3 "calreticulin 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1457 (517.9 bits), Expect = 3.0e-149, P = 3.0e-149
 Identities = 252/307 (82%), Positives = 282/307 (91%)

Query:    14 ISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHY 73
             ++ SEIF EE F+ GW+SRWV+SDWKR+EGKAG FKHTAGKW GDPD+KGIQT+ DA+HY
Sbjct:    25 LAFSEIFLEEHFEGGWKSRWVLSDWKRNEGKAGTFKHTAGKWPGDPDNKGIQTYNDAKHY 84

Query:    74 AISAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPD 133
             AISAKIPEFSNKNRTLVVQYS++ EQDIECGG YIKLLS YVNQK+FGGD PYSLMFGPD
Sbjct:    85 AISAKIPEFSNKNRTLVVQYSVKIEQDIECGGAYIKLLSGYVNQKQFGGDTPYSLMFGPD 144

Query:   134 ICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGS 193
             ICGTQ K LHVI+SYQGQNYPIKK+L+CETDKL HFYTFILRPDASYS+L+DN+ER+ GS
Sbjct:   145 ICGTQTKKLHVIVSYQGQNYPIKKDLQCETDKLNHFYTFILRPDASYSVLVDNKEREFGS 204

Query:   194 MYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWD 253
             MYTDWDILPPRKIK  NAKKP DWDDREYIDDPN VKPEG+DSIP+EIPD KAK+P++WD
Sbjct:   205 MYTDWDILPPRKIKVKNAKKPEDWDDREYIDDPNDVKPEGFDSIPREIPDRKAKEPEDWD 264

Query:   254 EDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYV 313
             E+E+GLW+PPKIPN AYKGPW+ KRIKNPNYKGKWK P+IDNPEFEDDPDLYVLK IKY 
Sbjct:   265 EEENGLWEPPKIPNSAYKGPWKAKRIKNPNYKGKWKNPWIDNPEFEDDPDLYVLKSIKYA 324

Query:   314 GIEVWQI 320
             GIEVWQ+
Sbjct:   325 GIEVWQV 331
GO:0005509 "calcium ion binding" evidence=IEA;ISS
GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA
GO:0006457 "protein folding" evidence=IEA;IGI
GO:0009507 "chloroplast" evidence=ISM
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0005789 "endoplasmic reticulum membrane" evidence=IDA
GO:0009626 "plant-type hypersensitive response" evidence=IMP
GO:0046283 "anthocyanin-containing compound metabolic process" evidence=IMP
GO:0055074 "calcium ion homeostasis" evidence=IGI
GO:0006995 "cellular response to nitrogen starvation" evidence=RCA
GO:0009617 "response to bacterium" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0031347 "regulation of defense response" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0045087 "innate immune response" evidence=RCA
UNIPROTKB|P93508 P93508 "Calreticulin" [Ricinus communis (taxid:3988)] Back     alignment and assigned GO terms
TAIR|locus:2010723 CRT1a "calreticulin 1a" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2195326 CRT1b "calreticulin 1b" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9SLY8 LOC_Os07g14270 "Calreticulin" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283539 crtA "calreticulin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-000208-17 calr "calreticulin" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9907 calrl "calreticulin like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-4042 calrl2 "calreticulin, like 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z1E6 crt "Calreticulin" [Bombyx mori (taxid:7091)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O04153CALR3_ARATHNo assigned EC number0.79380.95480.7476yesno
P18418CALR_RATNo assigned EC number0.51140.89750.7163yesno
P27797CALR_HUMANNo assigned EC number0.50810.89750.7146yesno
P52193CALR_BOVINNo assigned EC number0.50490.89750.7146yesno
Q8K3H7CALR_CRIGRNo assigned EC number0.50810.89750.7146yesno
P28491CALR_PIGNo assigned EC number0.50160.89750.7146yesno
Q23858CALR_DICDINo assigned EC number0.50150.96080.7523yesno
P14211CALR_MOUSENo assigned EC number0.51470.89750.7163yesno
P15253CALR_RABITNo assigned EC number0.50490.89750.7129yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00070148
hypothetical protein (425 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query332
pfam00262359 pfam00262, Calreticulin, Calreticulin family 1e-129
>gnl|CDD|215825 pfam00262, Calreticulin, Calreticulin family Back     alignment and domain information 
 Score =  373 bits (959), Expect = e-129
 Identities = 157/352 (44%), Positives = 206/352 (58%), Gaps = 52/352 (14%)

Query: 19  IFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGD-PDDKGIQTHTDARHYAI 75
           ++F E+FDD   W  RW+ S  K+ +   G +K  AGK++G    DKG+ T  DA+ YAI
Sbjct: 1   VYFFEQFDDDDLWEKRWIPSKAKKDD--DGKWKVEAGKFYGGEEKDKGLVTKDDAKFYAI 58

Query: 76  SAKIPE-FSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDI 134
           SAK P+ FSNK +TLVVQY ++ +Q I+CGG YIKLLS   +QK F G+ PY++MFGPDI
Sbjct: 59  SAKFPKPFSNKGKTLVVQYEVKLQQGIDCGGAYIKLLSKDFDQKDFSGETPYTIMFGPDI 118

Query: 135 CGTQKKHLHVIL------SYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRE 188
           CG+  K +H I        Y+ + + IKK +    DKLTH YT I+RPD ++ ILID   
Sbjct: 119 CGSDTKKVHFIFRHKPITGYKEEKHLIKKPISR-CDKLTHLYTLIIRPDNTFEILIDGEV 177

Query: 189 RDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD-SIPKEIPDPK 245
             SGS+  D+D    PP++I     KKP DWDDRE I DP A KPE +D   P+ IPDP 
Sbjct: 178 VKSGSLLEDFDPPFNPPKEIPDPTDKKPEDWDDREKIPDPEAKKPEDWDEDEPEFIPDPN 237

Query: 246 AKKPDN-------------------WDEDEDGLWKPPKIPNPA----------------- 269
           A KP+                    WD++EDG W+ P IPNP                  
Sbjct: 238 AVKPEGWLEDEPEYIPDPDATKPEDWDDEEDGEWEAPMIPNPKCEKACGCGKPPMIKNPK 297

Query: 270 YKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQIT 321
           YKG W+P  I NPNYKG WK   I NP++ +DP+ Y L+PI  +G E+WQ+ 
Sbjct: 298 YKGKWKPPMIDNPNYKGVWKPRKIPNPDYFEDPNPYNLEPIGAIGFELWQVK 349

Length = 359

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 332
PF00262367 Calreticulin: Calreticulin family; InterPro: IPR00 100.0
KOG0674406 consensus Calreticulin [Posttranslational modifica 100.0
KOG0675 558 consensus Calnexin [Posttranslational modification 100.0
PF00262367 Calreticulin: Calreticulin family; InterPro: IPR00 99.9
KOG0674406 consensus Calreticulin [Posttranslational modifica 99.88
KOG0675 558 consensus Calnexin [Posttranslational modification 99.86
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes Back     alignment and domain information 
Probab=100.00  E-value=3.2e-121  Score=893.59  Aligned_cols=310  Identities=51%  Similarity=0.974  Sum_probs=233.0

Q ss_pred             eeEEecCCCc--cCCCeEecccccCC---CCCccEEEeccccC-CCCCCcceeeccccchhhhhccCCC-cCCCCCceEE
Q 020055           19 IFFEERFDDG--WRSRWVISDWKRSE---GKAGYFKHTAGKWH-GDPDDKGIQTHTDARHYAISAKIPE-FSNKNRTLVV   91 (332)
Q Consensus        19 ~~F~E~Fd~~--~~~rWi~S~~~k~~---~~~G~w~~~~g~~~-~~~~DkGLv~~~~ak~yaIs~~l~~-~~~~~k~LVv   91 (332)
                      |||+|+|+++  |.+|||+|++++++   .|.|+|++++|+++ +.++|+||||+++|||||||++|++ |++++++|||
T Consensus         1 v~F~E~F~~~~~~~~rWv~S~~~k~~~~~~y~G~W~~~~~~~~~~~~~DkGLv~~~~ak~yaIS~kl~kPf~~~~k~LVv   80 (367)
T PF00262_consen    1 VYFFETFDDGDDWKSRWVQSEAKKDDEIAKYDGKWELEAGKWYPGFEGDKGLVTKSDAKHYAISAKLDKPFSNKDKDLVV   80 (367)
T ss_dssp             EEEEE---SGGGGGGTEEE--SSST--------EEEEEB-SSTSSTTTTBEEEEESSSEEEEEEEEEEEEE-STTS-EEE
T ss_pred             CeEeEecCCCCcccCceeeCCCcCcCccccCceEEEEecccccCCCcCceeeEeccchhhhhhhhhCCCccccCCCcEEE
Confidence            7999999986  99999999999874   67899999999665 5678999999999999999999998 9999999999


Q ss_pred             EEEEeeeceeecCCceEEEcccccccc-cccCCCCeeEEEccCccCCCCceEEEEEEeCCC-------ccccccCCcccc
Q 020055           92 QYSIRFEQDIECGGGYIKLLSAYVNQK-KFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQ-------NYPIKKELECET  163 (332)
Q Consensus        92 QYEVK~q~~i~CGGaYIKLl~~~~d~~-~f~~~TpY~IMFGPD~CG~~~~kvHfI~~~~~~-------~~~~~~~~~~~~  163 (332)
                      |||||||++|+|||||||||+.+.++. +|+++|||+||||||+|| .++||||||||++.       +|..+++..+.+
T Consensus        81 QYeVK~q~~idCGGaYIKLL~~~~~~~~~f~~~TpY~IMFGPD~CG-~~~kvHfI~~~~nP~~~~~~e~~l~~~p~~~~~  159 (367)
T PF00262_consen   81 QYEVKFQQGIDCGGAYIKLLPASFDQEENFSDKTPYSIMFGPDKCG-SSNKVHFIFRHKNPITGEIEEKHLKKPPISCFT  159 (367)
T ss_dssp             EEEEEETT--SEEE--EEEEBTTSSGGGG-STTS-ESEEEEEEEES-TTEEEEEEEEEE-TTTEETTEEEE-SSSSB-HH
T ss_pred             EEEEEeecceeccceEEEEecCccchhhhcCCCCCceEEeCCccCC-CCceEEEEEEecCCCCCcccceecccCCccccc
Confidence            999999999999999999999988777 999999999999999999 77889999998652       233455666789


Q ss_pred             cccCceEEEEECCCCceEEEECCeeecCCCCccCCc--cCCccccccCCCCCCCCcccccccCCCCCCCCCCCC------
Q 020055          164 DKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD------  235 (332)
Q Consensus       164 d~~tHlYTLii~~d~tyei~iD~~~~~~g~l~~d~~--~~~p~~I~Dp~~~KP~DW~d~~~I~Dp~a~KP~dWd------  235 (332)
                      |++||||||||+|||||||+|||+++.+|+|.+||+  ++||++|+||+|+||+||||+++|+||+|+||+|||      
T Consensus       160 D~~tHlYTLii~~dntyeI~IDg~~~~~G~L~~df~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~~p~~  239 (367)
T PF00262_consen  160 DKLTHLYTLIIRPDNTYEIRIDGEVVKSGSLLEDFDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDEDEPEF  239 (367)
T ss_dssp             SSSEEEEEEEEETTTEEEEEETTEEEEEEEHHHHSE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS--SE
T ss_pred             CCCcceEEEEEcCCCeEEEEECCEEeeccccccccccCcCChhcccCccccCCcchhhhcccCCccccCcccccccCccc
Confidence            999999999999999999999999999999999999  999999999999999999999999999999999999      


Q ss_pred             --------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------------CCCcccccCcCCCCC
Q 020055          236 --------------SIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNP------------------AYKGPWRPKRIKNPN  283 (332)
Q Consensus       236 --------------d~~~~I~dP~~~kP~dwd~~~~G~W~~p~I~nP------------------~ykG~W~~~~I~NP~  283 (332)
                                    +||++||||+|+||+|||+++||+|+||||+||                  +|||+|+||||+||+
T Consensus       240 I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~Np~YkG~W~pp~I~NP~  319 (367)
T PF00262_consen  240 IPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIKNPNYKGKWKPPMIPNPN  319 (367)
T ss_dssp             EE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTTS-BSS----EEE-TT--SS----EEE-TT
T ss_pred             ccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccCCCccccccccccCccccCCccccccCCcc
Confidence                          689999999999999999999999999999999                  999999999999999


Q ss_pred             CCCcccccccCCCCCCCCCCCCCcCCceEEEEEeeeecCCceecCC
Q 020055          284 YKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQITWLSAGQGG  329 (332)
Q Consensus       284 Y~g~W~p~~i~NP~y~~d~~~~~~~~i~~ig~elW~~~~g~if~~~  329 (332)
                      |+|+|+||+|+||+|++|.+|+.+.+|+|||||||||++|+||+|=
T Consensus       320 YkG~W~p~~I~NP~y~~d~~p~~~~~i~~ig~ElW~~~~~~~FDNi  365 (367)
T PF00262_consen  320 YKGEWKPRKIPNPDYFEDPNPYNFEPIGAIGFELWQMSSGIIFDNI  365 (367)
T ss_dssp             ---S----EEE-TT--SSTTTT--S-EEEEEEEEEESSS-EEEEEE
T ss_pred             ccccccccccCCCcccCCCCccccCceeEEEEEEEeccCCceeeeE
Confidence            9999999999999999999999999999999999999999999983

It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes Back     alignment and domain information
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query332
3rg0_A332 Structural And Functional Relationships Between The 4e-70
1jhn_A424 Crystal Structure Of The Lumenal Domain Of Calnexin 3e-55
3o0v_A273 Crystal Structure Of The Calreticulin Lectin Domain 2e-50
3pos_A265 Crystal Structure Of The Globular Domain Of Human C 1e-49
3o0w_A273 Structural Basis Of Carbohydrate Recognition By Cal 3e-49
1hhn_A101 Calreticulin P-Domain Length = 101 3e-23
1k9c_A74 Solution Structure Of Calreticulin P-Domain Subdoma 3e-15
1k91_A37 Solution Structure Of Calreticulin P-Domain Subdoma 5e-06
3ici_C38 Crystal Structure Of Cyclophilin B In Complex With 7e-05
>pdb|3RG0|A Chain A, Structural And Functional Relationships Between The Lectin And Arm Domains Of Calreticulin Length = 332 Back     alignment and structure 
Iteration: 1

 Score =  261 bits (667), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 136/305 (44%), Positives = 192/305 (62%), Gaps = 37/305 (12%)
Query: 19  IFFEERFDDG--WRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAI 75
           I+F+E+F DG  W +RWV S  K   GK   F  ++GK++GD + DKG+QT  DAR YA+
Sbjct: 7   IYFKEQFLDGDAWTNRWVESKHKSDFGK---FVLSSGKFYGDLEKDKGLQTSQDARFYAL 63
Query: 76  SAKIPEFSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDIC 135
           SAK   FSNK +TLVVQ++++ EQ+I+CGGGY+KL  + ++QK   GD+ Y++MFGPDIC
Sbjct: 64  SAKFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFGPDIC 123
Query: 136 GTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMY 195
           G   K +HVI +Y+G+N  I K++  + D+ TH YT I+RPD +Y + IDN + +SGS+ 
Sbjct: 124 GPGTKKVHVIFNYKGKNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLE 183
Query: 196 TDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPKAKKPDNWDED 255
            DWD LPP+KIK  +A KP DWD+R  IDDP   KPE                  +WD+ 
Sbjct: 184 DDWDFLPPKKIKDPDAAKPEDWDERAKIDDPTDSKPE------------------DWDKG 225
Query: 256 EDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGI 315
             G             G W+P++I NP+YKG W  P IDNPE+  D ++Y       +G+
Sbjct: 226 GSG-------------GEWKPRQIDNPDYKGTWIHPEIDNPEYSPDANIYAYDSFAVLGL 272
Query: 316 EVWQI 320
           ++WQ+
Sbjct: 273 DLWQV 277
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin Length = 424 Back     alignment and structure
>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain Length = 273 Back     alignment and structure
>pdb|3POS|A Chain A, Crystal Structure Of The Globular Domain Of Human Calreticulin Length = 265 Back     alignment and structure
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By Calreticulin Length = 273 Back     alignment and structure
>pdb|1HHN|A Chain A, Calreticulin P-Domain Length = 101 Back     alignment and structure
>pdb|1K9C|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain (Residues 189-261) Length = 74 Back     alignment and structure
>pdb|1K91|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain (Residues 221-256) Length = 37 Back     alignment and structure
>pdb|3ICI|C Chain C, Crystal Structure Of Cyclophilin B In Complex With Calmegin Fragment Length = 38 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query332
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 1e-107
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 1e-105
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 4e-74
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 9e-05
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 9e-41
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 9e-14
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Length = 424 Back     alignment and structure
 Score =  318 bits (815), Expect = e-107
 Identities = 129/369 (34%), Positives = 190/369 (51%), Gaps = 61/369 (16%)

Query: 13  QISVSEIFFEERFDDGWRSRWVISDWKRSEGK------AGYFKHTAGKWHGDPDDKGIQT 66
            +   E++F + FD G  S W++S  K+ +         G ++    K    P DKG+  
Sbjct: 20  PVPSGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVL 79

Query: 67  HTDARHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGGGYIKLLS--AYVNQKKFGGD 123
            + A+H+AISAK+ + F    + L+VQY + F+  IECGG Y+KLLS    +N  +F   
Sbjct: 80  MSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDK 139

Query: 124 APYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECE----------TDKLTHFYTFI 173
            PY++MFGPD CG   K LH I  ++     + +E   +          TDK TH YT I
Sbjct: 140 TPYTIMFGPDKCGEDYK-LHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLI 198

Query: 174 LRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKP 231
           L PD S+ IL+D    +SG++  D    + P R+I+    +KP DWD+R  I DP+AVKP
Sbjct: 199 LNPDNSFEILVDQSIVNSGNLLNDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKP 258

Query: 232 EGYD-SIPKEIPDPKAKK-------------------PDNWDEDEDGLWKPPKIPNPA-- 269
           + ++   P +IPD +A K                   P++WDED DG W+ P+I NP   
Sbjct: 259 DDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCE 318

Query: 270 -----------------YKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKY 312
                            YKG W+P  I NPNY+G WK   I NP+F +D + + + P   
Sbjct: 319 SAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSA 378

Query: 313 VGIEVWQIT 321
           +G+E+W +T
Sbjct: 379 IGLELWSMT 387
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Length = 332 Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Length = 265 Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Length = 265 Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Length = 101 Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Length = 38 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query332
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 100.0
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 100.0
3pow_A265 Calreticulin; legume lectin fold, CNX/CRT family, 100.0
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 100.0
1hhn_A101 Calreticulin; molecular chaperone; NMR {Rattus nor 99.94
1jhn_A424 Calnexin; jelly-roll, beta sandwich, chaperone; 2. 99.93
3rg0_A332 Calreticulin; beta-sandwich, chaperone, monoglucos 99.69
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 99.43
3ici_C38 Calnexin, PP90; protein-protein complex, endoplasm 98.46
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Back     alignment and structure
Probab=100.00  E-value=4.3e-119  Score=884.64  Aligned_cols=317  Identities=40%  Similarity=0.775  Sum_probs=284.6

Q ss_pred             hhhcceeeeEEecCCCccCCCeEecccccCC------CCCccEEEeccccCCCCCCcceeeccccchhhhhccCCC-cCC
Q 020055           12 FQISVSEIFFEERFDDGWRSRWVISDWKRSE------GKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPE-FSN   84 (332)
Q Consensus        12 ~~~~~~~~~F~E~Fd~~~~~rWi~S~~~k~~------~~~G~w~~~~g~~~~~~~DkGLv~~~~ak~yaIs~~l~~-~~~   84 (332)
                      ..++++++||+|+|+++|++|||+|+++|++      .|.|+|++++|++++.++|+||||+++|||||||++|++ |++
T Consensus        19 ~p~~~~~~~F~E~F~~~~~~rWv~S~~~k~~~~~~~~~y~G~w~~~~~~~~~~~~DkGL~~~~~ar~yaISa~~~kpf~~   98 (424)
T 1jhn_A           19 APVPSGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLF   98 (424)
T ss_dssp             CCCCCSCCSSEECCCSSSCCSCCCCCCC-----------CCEEECCBCTTCSSTTCBCCEEECSSCCCEEEEEEEEEECS
T ss_pred             cCCCCcceeEeeecCCCccCCceeCcccccccccccccCCeEEEEecCccCCCccccceeeccchhHHHHHHhhcCcccc
Confidence            4466799999999999999999999998763      367999999999999999999999999999999999998 999


Q ss_pred             CCCceEEEEEEeeeceeecCCceEEEcccc--cccccccCCCCeeEEEccCccCCCCceEEEEEEeCCCc-------ccc
Q 020055           85 KNRTLVVQYSIRFEQDIECGGGYIKLLSAY--VNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQN-------YPI  155 (332)
Q Consensus        85 ~~k~LVvQYEVK~q~~i~CGGaYIKLl~~~--~d~~~f~~~TpY~IMFGPD~CG~~~~kvHfI~~~~~~~-------~~~  155 (332)
                      ++++||||||||||++|+|||||||||+..  +++++|+++|||+||||||+|| .++||||||||+|.+       |..
T Consensus        99 ~~k~LVvQYeVk~q~~idCGGaYiKLl~~~~~~d~~~f~~~TpY~IMFGPD~CG-~~~kvH~I~~~knp~~g~~~ekh~~  177 (424)
T 1jhn_A           99 DTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCG-EDYKLHFIFRHKNPKTGVYEEKHAK  177 (424)
T ss_dssp             SSSCEEEEEEECCTTCCSEEECCEEEEBCCSSCCGGGCCSSCCEEEEEEEEEES-SCCEEEEEEEEECTTTCCEEEECCC
T ss_pred             CCCCEEEEEEEEecccccccceEEEeecCcccCCHhHcCCCCCceEeccCCccC-CCCeEEEEEecCCCCCCchhhhccc
Confidence            999999999999999999999999999974  7899999999999999999999 799999999998743       444


Q ss_pred             ccCC---cccccccCceEEEEECCCCceEEEECCeeecCCCCccCCc--cCCccccccCCCCCCCCcccccccCCCCCCC
Q 020055          156 KKEL---ECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVK  230 (332)
Q Consensus       156 ~~~~---~~~~d~~tHlYTLii~~d~tyei~iD~~~~~~g~l~~d~~--~~~p~~I~Dp~~~KP~DW~d~~~I~Dp~a~K  230 (332)
                      ++..   .|.+|++||||||||||||||+|+|||+++.+|||++||+  ++||++|+||+++||+|||++++|+||+|+|
T Consensus       178 ~~~~~~~~~~~D~~tHlYTLIl~pdntyei~ID~~~v~~GsL~~D~~Pp~~pp~~I~Dp~~~KP~DWde~~~I~Dp~a~K  257 (424)
T 1jhn_A          178 RPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLLNDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAVK  257 (424)
T ss_dssp             CCSSCCTHHHHSCSCEEEEEEEETTTEEEEEETTEEEEEEC-------CCSSCCCCBCTTCCCCTTCCCCSEEECSSCCC
T ss_pred             CCcccccccccCCCceEEEEEEcCCCcEEEEECCceecccccHHhccccCCCcccccCccccCccccccccccCCcccCC
Confidence            5454   3568999999999999999999999999999999999999  9999999999999999999999999999999


Q ss_pred             CCCCCC--------------------CCCCCCCCCCCCCCCCCCCCCCCCC-------------------CCCCCCCCCC
Q 020055          231 PEGYDS--------------------IPKEIPDPKAKKPDNWDEDEDGLWK-------------------PPKIPNPAYK  271 (332)
Q Consensus       231 P~dWdd--------------------~~~~I~dP~~~kP~dwd~~~~G~W~-------------------~p~I~nP~yk  271 (332)
                      |+|||+                    +|++|+||+|+||+|||+++||+|+                   ||||.||+||
T Consensus       258 PeDWde~~p~~I~Dp~A~KPedWdd~ep~~I~DP~a~KPedWd~~~~G~W~~P~i~NP~~~~~~gcG~W~~P~I~NP~yk  337 (424)
T 1jhn_A          258 PDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYK  337 (424)
T ss_dssp             CTTCCSSCCSEEECTTCCCCSSCBSSSCSCCBCTTCCCCTTCCTTTSCCCCCCBCCCGGGTTSSCBSSCCCCEEECTTCC
T ss_pred             ccccccCCccccCCccccCCCCccccccccCCCcccCCccccccCCCccccCcccCCchhcccccCCcccCCCCCCcccc
Confidence            999973                    4779999999999999998877776                   5777788889


Q ss_pred             cccccCcCCCCCCCCcccccccCCCCCCCCCCCCCcCCceEEEEEeeeecCCceecCC
Q 020055          272 GPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQITWLSAGQGG  329 (332)
Q Consensus       272 G~W~~~~I~NP~Y~g~W~p~~i~NP~y~~d~~~~~~~~i~~ig~elW~~~~g~if~~~  329 (332)
                      |+|+||+|+||+|+|+|+||+|+||+|++|.+|++|.+|++||||||||++||||+|-
T Consensus       338 G~W~pp~I~NP~Ykg~W~p~~I~NP~y~~d~~p~~~~~i~~iG~ElW~~~~g~~FDNi  395 (424)
T 1jhn_A          338 GKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSAIGLELWSMTSDIFFDNF  395 (424)
T ss_dssp             CSCCCCEEECTTCCCSCCCCBCCCTTCCCCCCTTCCCCEEEEEECCCCSSSCCBCEEE
T ss_pred             CcccCCccCCCcccccccccccCCccccCCCcccccCcccEEEEEeEEeeCCcEEeeE
Confidence            9999999999999999999999999999999999999999999999999999999984
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Back     alignment and structure
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Back     alignment and structure
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A Back     alignment and structure
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Back     alignment and structure
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Back     alignment and structure
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 332
d1jhna4249 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Cani 4e-80
d1jhna3142 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familia 8e-35
d1k9ca_74 b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu 4e-31
d1k91a_37 b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicu 5e-14
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 249 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

 Score =  242 bits (619), Expect = 4e-80
 Identities = 80/262 (30%), Positives = 121/262 (46%), Gaps = 39/262 (14%)

Query: 17  SEIFFEERFDDGWRSRWVISDWKRSEGK------AGYFKHTAGKWHGDPDDKGIQTHTDA 70
            E++F + FD G  S W++S  K+ +         G ++    K    P DKG+   + A
Sbjct: 8   GEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRA 67

Query: 71  RHYAISAKIPE-FSNKNRTLVVQYSIRFEQDIECGGGYIKLLSAY--VNQKKFGGDAPYS 127
           +H+AISAK+ + F    + L+VQY + F+  IECGG Y+KLLS    +N  +F    PY+
Sbjct: 68  KHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYT 127

Query: 128 LMFGPDICGTQKKHLHVILSYQGQNYPIKKELECE----------TDKLTHFYTFILRPD 177
           +MFGPD CG   K LH I  ++     + +E   +          TDK TH YT IL PD
Sbjct: 128 IMFGPDKCGEDYK-LHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPD 186

Query: 178 ASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSI 237
            S+ IL+D    +SG++   + + P   I        +D     +I   +          
Sbjct: 187 NSFEILVDQSIVNSGNL-EPFKMTPFSAIGLELWSMTSDIFFDNFIVCGD---------- 235

Query: 238 PKEIPDPKAKKPDNWDEDEDGL 259
                    +  D+W  D  GL
Sbjct: 236 --------RRVVDDWANDGWGL 249
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 142 Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 74 Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 37 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query332
d1jhna4249 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 100.0
d1jhna3142 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 100.0
d1jhna3142 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 100.0
d1k9ca_74 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.97
d1k9ca_74 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.82
d1k91a_37 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 99.59
d1jhna4249 Calnexin {Dog (Canis familiaris) [TaxId: 9615]} 98.76
d1k91a_37 Calreticulin {Rat (Rattus norvegicus) [TaxId: 1011 98.55
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=100.00  E-value=8.7e-81  Score=579.72  Aligned_cols=222  Identities=33%  Similarity=0.565  Sum_probs=197.5

Q ss_pred             hhcceeeeEEecCCCccCCCeEecccccCCC------CCccEEEeccccCCCCCCcceeeccccchhhhhccCCC-cCCC
Q 020055           13 QISVSEIFFEERFDDGWRSRWVISDWKRSEG------KAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPE-FSNK   85 (332)
Q Consensus        13 ~~~~~~~~F~E~Fd~~~~~rWi~S~~~k~~~------~~G~w~~~~g~~~~~~~DkGLv~~~~ak~yaIs~~l~~-~~~~   85 (332)
                      .++.+++||+|+|+++|.+|||+|+|+++..      +.|+|.+.+++.++.++|+||||+++|||||||++|++ |+++
T Consensus         4 p~~~~~v~F~E~Fd~~~~~rWi~S~akk~~~~~~~~~y~G~W~~~~~~~~~~~~DkGL~~~~~ak~yaIs~~l~~pf~~~   83 (249)
T d1jhna4           4 PVPSGEVYFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFD   83 (249)
T ss_dssp             CCCCSCCSSEECCCSSSCCSCCCCCCC-----------CCEEECCBCTTCSSTTCBCCEEECSSCCCEEEEEEEEEECSS
T ss_pred             CCCCcceeEEeccCCcccCCCEECcccccCcccceeeccceeeeecccccCCCCcccceecccchhhhhhccCCCCcccC
Confidence            3567999999999999999999999987542      46777777666677889999999999999999999999 9999


Q ss_pred             CCceEEEEEEeeeceeecCCceEEEcccc--cccccccCCCCeeEEEccCccCCCCceEEEEEEeCCCc------ccccc
Q 020055           86 NRTLVVQYSIRFEQDIECGGGYIKLLSAY--VNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQN------YPIKK  157 (332)
Q Consensus        86 ~k~LVvQYEVK~q~~i~CGGaYIKLl~~~--~d~~~f~~~TpY~IMFGPD~CG~~~~kvHfI~~~~~~~------~~~~~  157 (332)
                      +|+||||||||+|++++|||||||||+.+  +++++|+++|||+||||||+|| .++||||||||+|.+      +++++
T Consensus        84 ~k~LVvQYeVk~q~~~~CGGaYiKLl~~~~~~~~~~f~~~TpY~IMFGPD~CG-~~~kvHfIf~~~np~~~~~eek~~~~  162 (249)
T d1jhna4          84 TKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCG-EDYKLHFIFRHKNPKTGVYEEKHAKR  162 (249)
T ss_dssp             SSCEEEEEEECCTTCCSEEECCEEEEBCCSSCCGGGCCSSCCEEEEEEEEEES-SCCEEEEEEEEECTTTCCEEEECCCC
T ss_pred             CCCEEEEEEeeeccCccccceEEEeecCcccCCHhHcCCCCCceEEeCCcccC-CCCEEEEEEEcCCCCCccceeeeecC
Confidence            99999999999999999999999999874  6899999999999999999999 789999999998743      22333


Q ss_pred             C----CcccccccCceEEEEECCCCceEEEECCeeecCCCCccCCccCCccccccCCCCCCCCcccccccCCCCCCCCCC
Q 020055          158 E----LECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEG  233 (332)
Q Consensus       158 ~----~~~~~d~~tHlYTLii~~d~tyei~iD~~~~~~g~l~~d~~~~~p~~I~Dp~~~KP~DW~d~~~I~Dp~a~KP~d  233 (332)
                      +    +.+.+|++||||||||+|||||||+|||+++.+|+|. +|.+.|+++|+||.++||+||+|+++|+||+|+||+|
T Consensus       163 p~~~~~~~~~D~~tHLYTLIi~pdntfeI~iDg~~~~~G~le-~~~~~p~~~i~dp~~~KP~DW~d~~~I~dp~~~kped  241 (249)
T d1jhna4         163 PDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLE-PFKMTPFSAIGLELWSMTSDIFFDNFIVCGDRRVVDD  241 (249)
T ss_dssp             CSSCCTHHHHSCSCEEEEEEEETTTEEEEEETTEEEEEECCC-TTCCCCEEEEEECCCCSSSCCBCEEEEEESSSHHHHH
T ss_pred             CCccccccCcCCCcccceEEECCCCeEEEEeCCccccCCCcC-cccCCCcccCCCcccCCCCCccccccccCCCcCChhh
Confidence            3    3456899999999999999999999999999999975 5888899999999999999999999999999999999


Q ss_pred             CCC
Q 020055          234 YDS  236 (332)
Q Consensus       234 Wdd  236 (332)
                      ||+
T Consensus       242 Wde  244 (249)
T d1jhna4         242 WAN  244 (249)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            996
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure