Citrus Sinensis ID: 020073

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
Protein Sequence
MEIHEEHRDHQSQHLPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPVTAE
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEcccccccccHHHHHHcccEEEEcccccccHHHHHHHHccccEEEEEcccccccHHHHHHccccEEEEEEccccccccHHHHHHcccEEEccccccHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccccccEEEEEcccHHHHHHHHHHcccccEEEEEccccccccccccccHHHHHHHccEEEEEcccccHHcccccHHHHHHccccEEEEEccccccccHHHHHHHHHcccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccccccccEEEEEccccHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHcccEEEEEccccccHHHHHHccccEEEEEcccccccccHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccEEEEEcccHHHHHHHHHHHHcccEEEEEcccccHHcccEEEcHHHHHHHccEEEEEccccHHHcccccHHHHHHHcccEEEEEccccccccHHHHHHHHHcccEEEEEEEcccccccccccccccccEEEcccccHcHHHHHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
meiheehrdhqsqhlprvlvikppppltlfgdkFISRSFQLLKAYESSLSLEQFLISHAHSIEAIlcsgdspvtlDILRLLPKLRLVVTAsagvnhihmpecrrrgiavanagsifsddaADAAVGLLIDVWRKISSADRFLRQGLWskigdyplgsklggkrvgivgLGNIGLQVAKRLQAFGcnvlynsrskkpvpyafYSNVCELAANSDALIICCALTDQTRRMINREVMLALGkegiivnvgrgavidenEMVRCLVRGEiagagldvfenepyvpkelleldnvvlqphravftseCFVDLCELAVGNLEalfsnqpllspvtae
Flexible Loop (DISEMBL)
meiheehrdhqsqhlprvlvikpPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASagvnhihmpeCRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKigdyplgsklgGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLalgkegiivnvgrgavidenEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEalfsnqpllspvtae
Low Complexity Region (SEG)
MEIHEEHRDHQSQHLPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTldilrllpklrlVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPVTAE
Disordered region (IsUnstruct)
****************RVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSN**********
Disordered Region (DISOPRED)
******************LVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLS*****
Disordered Region (DISEMBL)
**************LPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPVTAE
Disordered Region (DISPRO)
***********SQHLPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEIHEEHRDHQSQHLPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPVTAE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	331	2.2.26 [Sep-21-2011]
Q9LE33	323	Glyoxylate/hydroxypyruvat	no	no	0.942	0.965	0.555	7e-96
Q9CA90	313	Glyoxylate/hydroxypyruvat	no	no	0.900	0.952	0.416	6e-64
Q8U3Y2	336	Glyoxylate reductase OS=P	yes	no	0.797	0.785	0.362	5e-44
B6YWH0	334	Glyoxylate reductase OS=T	yes	no	0.909	0.901	0.338	1e-43
A1RYE4	339	Glyoxylate reductase OS=T	yes	no	0.809	0.790	0.355	5e-43
Q9C4M5	331	Glyoxylate reductase OS=T	N/A	no	0.906	0.906	0.352	1e-41
Q5JEZ2	333	Glyoxylate reductase OS=P	yes	no	0.912	0.906	0.342	3e-39
B1L765	332	Glyoxylate reductase OS=K	yes	no	0.903	0.900	0.334	1e-38
O27051	525	D-3-phosphoglycerate dehy	yes	no	0.794	0.500	0.353	1e-38
Q9YAW4	335	Glyoxylate reductase OS=A	yes	no	0.906	0.895	0.338	8e-38

>sp|Q9LE33|HPR3_ARATH Glyoxylate/hydroxypyruvate reductase HPR3 OS=Arabidopsis thaliana GN=HPR3 PE=2 SV=1

 Score =  350 bits (899), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 175/315 (55%), Positives = 231/315 (73%), Gaps = 3/315 (0%)

Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQ-LLKAYESSLSLEQFLISHAHSIEAILCSGDSPVT 74
           P V+++  PP LT F D+ ++R F+ L+    SS SL  F   HA S  A + SG  PVT
Sbjct: 7   PPVVLLHRPPSLT-FMDEILTREFRTLITDTSSSESLPSFFPRHASSARAFVISGRLPVT 65

Query: 75  LDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRK 134
            ++L  LP L+++V  S G++HI +  C+RRGI + NAG+ FSDD AD AVGLLI V R+
Sbjct: 66  DELLSHLPSLQILVCTSVGIDHIDLAACKRRGIVITNAGNAFSDDVADCAVGLLISVLRR 125

Query: 135 ISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRS- 193
           I +ADR++R G W+K GD+ LGSK+ GKRVGIVGLG+IG  VAKRL++FGC + YNSRS 
Sbjct: 126 IPAADRYVRSGNWAKFGDFQLGSKVSGKRVGIVGLGSIGSFVAKRLESFGCVISYNSRSQ 185

Query: 194 KKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVID 253
           K+  PY +YS++  LA N+D L++CC+LTD+T  ++NREVM  LGK+G+++NVGRG +ID
Sbjct: 186 KQSSPYRYYSDILSLAENNDVLVLCCSLTDETHHIVNREVMELLGKDGVVINVGRGKLID 245

Query: 254 ENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVG 313
           E EMV+CLV G I GAGLDVFENEP VP+EL  LDNVVL PH AV T     ++ ++A+ 
Sbjct: 246 EKEMVKCLVDGVIGGAGLDVFENEPAVPQELFGLDNVVLSPHFAVATPGSLDNVAQIALA 305

Query: 314 NLEALFSNQPLLSPV 328
           NL+A FSN+PLLSPV
Sbjct: 306 NLKAFFSNRPLLSPV 320

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate. Mostly active in the presence of NADPH and glyoxylate.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 1

>sp|Q9CA90|HPR2_ARATH Glyoxylate/hydroxypyruvate reductase A HPR2 OS=Arabidopsis thaliana GN=HPR2 PE=1 SV=1

 Score =  244 bits (623), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 128/307 (41%), Positives = 198/307 (64%), Gaps = 9/307 (2%)

Query: 26  PLTLFGDKFISRSFQLLKAY---ESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLP 82
           P++ + +  + + F LL+ +   E S+ LE    +H +SI A++ +  +     ++  LP
Sbjct: 11  PMSSYLENELEKRFNLLRFWTSPEKSVLLE----THRNSIRAVVGNASAGADAQLISDLP 66

Query: 83  KLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFL 142
            L +V + S G++ I + +C+ +GI V N   + ++D AD A+GL++ + R++   DR++
Sbjct: 67  NLEIVSSFSVGLDKIDLGKCKEKGIRVTNTPDVLTEDVADLAIGLILALLRRLCECDRYV 126

Query: 143 RQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-VPYAF 201
           R G W K G++ L +K  GK VGI+GLG IG  +AKR +AF C + Y SR+ KP V Y +
Sbjct: 127 RSGKW-KQGEFQLTTKFSGKSVGIIGLGRIGTAIAKRAEAFSCPINYYSRTIKPDVAYKY 185

Query: 202 YSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCL 261
           Y  V +LA NSD L++ C LT+QTR +++R+VM ALG +G+++N+GRG  +DE E+++ L
Sbjct: 186 YPTVVDLAQNSDILVVACPLTEQTRHIVDRQVMDALGAKGVLINIGRGPHVDEQELIKAL 245

Query: 262 VRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSN 321
             G + GA LDVFE EP+VP+EL  L+NVVL PH    T E    + +L VGNLEA FS 
Sbjct: 246 TEGRLGGAALDVFEQEPHVPEELFGLENVVLLPHVGSGTVETRNAMADLVVGNLEAHFSG 305

Query: 322 QPLLSPV 328
           + LL+PV
Sbjct: 306 KSLLTPV 312

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate in the cytoplasm, thus providing a cytosolic bypass to the photorespiratory core cycle. Mostly active in the presence of NADPH and hydroxypyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1

 Score =  178 bits (452), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 99/273 (36%), Positives = 145/273 (53%), Gaps = 9/273 (3%)

Query: 55  LISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGS 114
           L+     ++A++      +  ++    P+LR+V   + G ++I + E  RRGI V N   
Sbjct: 39  LLEKVKDVDALVTMLSERIDQEVFENAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPD 98

Query: 115 IFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIG-----DYPLGSKLGGKRVGIVGL 169
           + ++  AD A  LL+   R +   D+F+R G W + G      + LG +L GK +GIVG 
Sbjct: 99  VLTNATADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIGIVGF 158

Query: 170 GNIGLQVAKRLQAFGCNVLYNSRSKKPVPY----AFYSNVCELAANSDALIICCALTDQT 225
           G IG  +A+R + F   +LY SR++K        A Y  + E+   SD +I+   LT +T
Sbjct: 159 GRIGQAIARRAKGFNMRILYYSRTRKSQAEKELGAEYRPLEEVLKESDFVILAVPLTKET 218

Query: 226 RRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELL 285
             MIN E +  +    I+VN+ RG V+D   +++ L  G IAGAGLDVFE EPY  +EL 
Sbjct: 219 MYMINEERLKLMKPTAILVNIARGKVVDTKALIKALKEGWIAGAGLDVFEEEPYYNEELF 278

Query: 286 ELDNVVLQPHRAVFTSECFVDLCELAVGNLEAL 318
            LDNVVL PH    T E    + EL   NL A 
Sbjct: 279 SLDNVVLTPHIGSATFEAREAMAELVARNLIAF 311

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1

 Score =  177 bits (449), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 168/316 (53%), Gaps = 15/316 (4%)

Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSL-EQFLISHAHSIEAILCSGDSPVT 74
           P+VL+ +  P     G K +   F++ + +E    +  + L+     ++A++      + 
Sbjct: 3   PKVLITRKIPE---NGIKMLREHFEV-EVWEDEHEISREVLLEKVRDVDALVTMLSERID 58

Query: 75  LDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRK 134
            ++    P+L++V   + G ++I + E  + G+ + N   + ++  AD A  LL+   R+
Sbjct: 59  AEVFDAAPRLKIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLATARR 118

Query: 135 ISSADRFLRQGLWSKIG--DYPL---GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY 189
           +  AD+F+R G W K G   +PL   G  + G+ +GIVG G IG  +A+R + FG  +LY
Sbjct: 119 LIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIARRAKGFGMRILY 178

Query: 190 NSRSKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVN 245
           NSR++KP       A +  + EL   SD +++   LT +T  MIN E +  +    I+VN
Sbjct: 179 NSRTRKPEVEKELGAEFMPLDELLKESDFVVLVVPLTKETYHMINEERLKLMKPTAILVN 238

Query: 246 VGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFV 305
           + RG V+D   +V+ L  G IAGAGLDVFE EPY  +EL  LDNVVL PH    T     
Sbjct: 239 IARGKVVDTEALVKALREGWIAGAGLDVFEEEPYYHEELFSLDNVVLAPHIGSATYGARE 298

Query: 306 DLCELAVGNLEALFSN 321
            + EL   NL A F N
Sbjct: 299 GMAELVARNLIA-FKN 313

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score =  175 bits (443), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 98/276 (35%), Positives = 150/276 (54%), Gaps = 8/276 (2%)

Query: 55  LISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGS 114
           L+ +    +A+LC     +  +++   P L+++ T S G +HI +PE  +RGI V +   
Sbjct: 41  LLRNIRDKDALLCLLTDKIDAEVMDAAPNLKVISTYSVGFDHIDIPEATKRGIYVTHTPG 100

Query: 115 IFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGD--YPLGSKLGGKRVGIVGLGNI 172
           + +D  A+  VGL++ V R+I  AD+ +R G W K  +  +  G +L GK +G+VGLG I
Sbjct: 101 VLTDAVAEFTVGLILAVTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRI 160

Query: 173 GLQVAKRLQAFGCNVLYNSRSKK-----PVPYAFYSNVCELAANSDALIICCALTDQTRR 227
           G+  AKRL +F   +LY    ++      +P   ++++  L   SD + I   LT +T  
Sbjct: 161 GVATAKRLSSFDVKILYYDIERRWDVETVIPNMEFTDLDTLLEKSDIVSIHVPLTKETYH 220

Query: 228 MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE-LLE 286
           +IN E +  + K   ++N  RG V+D   +V+ L  G IAGA LDVFE EP  P   L +
Sbjct: 221 LINEERLRKMKKTAYLINTARGPVVDTEALVKALKEGWIAGAALDVFEQEPLPPNHPLTK 280

Query: 287 LDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQ 322
            DNVVL PH A  T E    + ELA  NL A+   +
Sbjct: 281 FDNVVLAPHIASATIEARQRMAELAARNLIAVLKGE 316

Thermofilum pendens (strain Hrk 5) (taxid: 368408)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/312 (35%), Positives = 163/312 (52%), Gaps = 12/312 (3%)

Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTL 75
           P+V + +  P     G K I + +++    +        L+     ++A++      V  
Sbjct: 3   PKVFITRQIPE---NGIKMIEKFYEIELWKDPKAPPRGVLLEKVREVDALVTLVTDKVDK 59

Query: 76  DILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKI 135
           ++L   PKL+++   + G ++I + E  +RGI V N   + +D  AD A  LL+ V R+I
Sbjct: 60  ELLENAPKLKIIAQYAVGYDNIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVARRI 119

Query: 136 SSADRFLRQGLWSK--IGDYPL---GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYN 190
             AD F+R G W K  +G +PL   G  L GK +GIVG G IG  +AKR + FG  ++Y 
Sbjct: 120 VEADAFVRSGEWKKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAKRAKGFGMKIIYY 179

Query: 191 SRSKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNV 246
           SR++KP       A Y +   L   SD + +   LT +T  MI  + +  +    I++N 
Sbjct: 180 SRTRKPEAEEEIGAEYVDFETLLKESDFISLHVPLTKETYHMIGEKELKLMKPNAILINT 239

Query: 247 GRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVD 306
            RGAV+D N +++ L  G IAGAGLDVFE EPY  +EL +L NVVL PH    T E    
Sbjct: 240 SRGAVVDTNALIKALKEGWIAGAGLDVFEEEPYYNEELFKLKNVVLAPHIGSATHEAREG 299

Query: 307 LCELAVGNLEAL 318
           + EL   NL A 
Sbjct: 300 MAELVAKNLIAF 311

Thermococcus litoralis (taxid: 2265)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1

 Score =  162 bits (410), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/315 (34%), Positives = 163/315 (51%), Gaps = 13/315 (4%)

Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTL 75
           P+V + +  P     G + +   F++    E      + L+     ++A++      +  
Sbjct: 3   PKVFITRAIPE---NGIEMLKEHFEVEVWPEEREIPREVLLKKVRDVDALVTMLSERIDS 59

Query: 76  DILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKI 135
           ++    P+LR+V   + G ++I + E  RRGI V N   + +D  AD A  LL+   R++
Sbjct: 60  EVFDAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATARRL 119

Query: 136 SSADRFLRQGLWSKIG-----DYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYN 190
             AD F R G W + G      + LG  + GK +GIVG G IG  VA+R + FG  +LY 
Sbjct: 120 IEADHFTRSGEWKRRGIAWHPRWFLGYDVYGKTIGIVGFGRIGQAVARRARGFGMRILYY 179

Query: 191 SRSKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNV 246
           SRS+KP       A + ++ +L   SD +++   LT +T+ MIN E +  + K  I+VN+
Sbjct: 180 SRSRKPEAEKELGAEFRSLEDLLRESDFVVLAVPLTKETQYMINEERLRLMKKTAILVNI 239

Query: 247 GRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVD 306
            RG V+D   +++ L  G IAGAGLDV+E EPY  +EL  L NVVL PH    T      
Sbjct: 240 ARGKVVDTKALMKALKEGWIAGAGLDVYEEEPYYNEELFSLKNVVLAPHIGSATYGAREG 299

Query: 307 LCELAVGNLEALFSN 321
           + EL   NL A F N
Sbjct: 300 MAELVARNLIA-FKN 313

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1

 Score =  160 bits (406), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/311 (33%), Positives = 164/311 (52%), Gaps = 12/311 (3%)

Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTL 75
           PRV V +  P   L     I   F+L    + +   ++ +I      +A++     P+  
Sbjct: 3   PRVFVTREIPERGLSK---IEEHFELDLWKDEAPPSKKVIIERVKDCDALVSLLTDPIDA 59

Query: 76  DILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKI 135
           ++    PKLR+V   + G ++I + E  +RGI V N   + ++  AD A  LL+   R++
Sbjct: 60  EVFEAAPKLRIVAQYAVGYDNIDVKEATKRGIYVTNTPGVLTETTADFAFALLMAAARRV 119

Query: 136 SSADRFLRQGLWSKIGDYP---LGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY-NS 191
             ADR++R+G W K+  +P   LG  + G+ +GIVG+G IG  VA+R + FG  +LY +S
Sbjct: 120 VEADRYVREGKW-KVAWHPMMMLGYDVYGRTLGIVGMGRIGAAVARRAKGFGMRILYYDS 178

Query: 192 RSKKPVPYAF---YSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGR 248
             ++         Y  + +L   SD + +   LT++T  MI  E +  + +  I+VN  R
Sbjct: 179 IRREDFEKELGVEYVPLEKLLEESDFVSLHVPLTEETYHMIGEEQLRRMKRTAILVNTSR 238

Query: 249 GAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE-LLELDNVVLQPHRAVFTSECFVDL 307
           G V+D+  + + L  G IAGAGLDVFE EP  P + LL+L+NVVL PH A  + E    +
Sbjct: 239 GKVVDQKALYKALKEGWIAGAGLDVFEQEPIPPDDPLLKLENVVLAPHAASASHETRSRM 298

Query: 308 CELAVGNLEAL 318
            E+   NL A 
Sbjct: 299 AEMVAENLIAF 309

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|O27051|SERA_METTH D-3-phosphoglycerate dehydrogenase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=serA PE=3 SV=1

 Score =  160 bits (405), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/269 (35%), Positives = 146/269 (54%), Gaps = 6/269 (2%)

Query: 55  LISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGS 114
           L+      +AI+    + VT +++   P+L+++  A  GV+++ +     RGI V NA  
Sbjct: 37  LLDAIKDFDAIVVRSRTKVTREVIEAAPRLKIIARAGVGVDNVDVKAATDRGIMVINAPE 96

Query: 115 IFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGL 174
             S   A+ ++GL++ + RKI+ ADR +++G W K  +  +G +L GK +GI+G+G IG 
Sbjct: 97  STSITVAEHSIGLMLALARKIAIADRSVKEGKWEK--NRFMGIELNGKTLGIIGMGRIGS 154

Query: 175 QVAKRLQAFGCNVL-YNSRSKKPVPYAFYSNVCELAA---NSDALIICCALTDQTRRMIN 230
           QV  R +AFG +++ Y+    K         V +L      SD + I   LT +TR +I+
Sbjct: 155 QVVVRTKAFGMDIMVYDPYISKEAAEEMGVTVTDLETLLRESDIVTIHVPLTPETRHLIS 214

Query: 231 REVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNV 290
            +    +     IVN  RG +IDE+ + R L  GEIAGA LDVFE EP     LLEL+NV
Sbjct: 215 EDEFKLMKDTAFIVNCARGGIIDEDALYRALKDGEIAGAALDVFEEEPPEGSPLLELENV 274

Query: 291 VLQPHRAVFTSECFVDLCELAVGNLEALF 319
           VL PH    TSE   D   +    ++ +F
Sbjct: 275 VLTPHIGASTSEAQRDAAIIVANEIKTVF 303

Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=gyaR PE=3 SV=2

 Score =  157 bits (398), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 106/313 (33%), Positives = 163/313 (52%), Gaps = 13/313 (4%)

Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTL 75
           PRV V +   P  L   + +S+ + +    +      + L+S A   +A+       +  
Sbjct: 4   PRVFVTREVFPEAL---ELLSKYYDVEVWDKYQPPPYETLLSKAREADALYTLLTDRIDC 60

Query: 76  DILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKI 135
           D+L   P+LR+V   + G ++I +    R GI V N   + ++  A+    L++   R++
Sbjct: 61  DLLSQAPRLRIVAQMAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRV 120

Query: 136 SSADRFLRQGLWSKI--GDYP---LGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYN 190
             AD F+R G W ++  G +P   LG +L GK +GI+G+G IG +VA+  +AFG  ++Y+
Sbjct: 121 VEADHFVRWGEWWRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAEIGKAFGMRIIYH 180

Query: 191 SRSKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNV 246
           SRS+K        A Y ++ +L   SD L I   LTD+TR +I    +  + K  I+VN 
Sbjct: 181 SRSRKREIEKELGAEYRSLEDLLRESDILSIHLPLTDETRHLIGESELKLMKKTAILVNT 240

Query: 247 GRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE-LLELDNVVLQPHRAVFTSECFV 305
           GRGA++D   +V+ L  G IA A LDVFE EP  P   L    NVVL PH A  T E  +
Sbjct: 241 GRGAIVDTGALVKALREGWIAAAALDVFEEEPLNPNHPLTAFKNVVLAPHAASATRETRL 300

Query: 306 DLCELAVGNLEAL 318
            +  +A  NL A 
Sbjct: 301 RMAMMAAENLVAF 313

Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
317106633	333	JHL05D22.10 [Jatropha curcas]	1.0	0.993	0.693	1e-129
224127470	339	predicted protein [Populus trichocarpa]	0.990	0.967	0.705	1e-126
317106635	331	JHL05D22.12 [Jatropha curcas]	0.963	0.963	0.666	1e-121
317106634	333	JHL05D22.11 [Jatropha curcas]	0.972	0.966	0.661	1e-120
255541390	333	glycerate dehydrogenase, putative [Ricin	0.993	0.987	0.634	1e-119
224063945	335	predicted protein [Populus trichocarpa]	0.978	0.967	0.641	1e-118
359489392	341	PREDICTED: glyoxylate reductase isoform	0.966	0.938	0.667	1e-116
224127466	331	predicted protein [Populus trichocarpa]	0.957	0.957	0.662	1e-116
255541386	328	glycerate dehydrogenase, putative [Ricin	0.948	0.957	0.636	1e-115
224063943	291	predicted protein [Populus trichocarpa]	0.870	0.989	0.695	1e-115

>gi|317106633|dbj|BAJ53139.1| JHL05D22.10 [Jatropha curcas]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/333 (69%), Positives = 277/333 (83%), Gaps = 2/333 (0%)

Query: 1   MEIHEEHRDHQSQHLPRVLVIKPPPPLTLFG-DKFISRSFQLLKAYESSLSLEQFLISHA 59
           M+  E++R+ QSQ LP+VL++KPPP +T+ G D+F+S  +QLLKA+ES L L Q L  HA
Sbjct: 1   MDNQEQNRNCQSQDLPQVLLLKPPPVVTVLGEDQFLSNRYQLLKAWESPLPLHQLLTKHA 60

Query: 60  HSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDD 119
           +SI+AILCSGDSPVT D+L+ LP +RLVVTASAG+NHI +  CRRRGI+V NAG +FSD 
Sbjct: 61  NSIQAILCSGDSPVTDDLLQRLPSVRLVVTASAGINHIDLIACRRRGISVTNAGIVFSDG 120

Query: 120 AADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKR 179
            ADAAVGL  DV RKIS+ADR++RQGLW K GDYPL SK+GGKRVGIVGLG+IG +VAKR
Sbjct: 121 GADAAVGLYFDVLRKISAADRYVRQGLWVKKGDYPLASKIGGKRVGIVGLGSIGSEVAKR 180

Query: 180 LQAFGCNVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALG 238
           L+AFGC + YNSR KK   PY FYS+VCELAANSDALIICCALTDQT+ MIN+EV+ ALG
Sbjct: 181 LEAFGCIISYNSRKKKNFAPYPFYSSVCELAANSDALIICCALTDQTQHMINKEVLSALG 240

Query: 239 KEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAV 298
           KEG+IVN+GRGA++DE E+VR L+ G+IAGAGLDVFENEP+VPKEL  +DNVVL PH AV
Sbjct: 241 KEGVIVNIGRGAIVDEKELVRFLMEGKIAGAGLDVFENEPHVPKELFGMDNVVLSPHIAV 300

Query: 299 FTSECFVDLCELAVGNLEALFSNQPLLSPVTAE 331
           FT E F+ LC+L VGNLEA+FSN  LLSPV  E
Sbjct: 301 FTPESFMALCKLVVGNLEAVFSNGRLLSPVMDE 333

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127470|ref|XP_002320082.1| predicted protein [Populus trichocarpa] gi|222860855|gb|EEE98397.1| predicted protein [Populus trichocarpa]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/336 (70%), Positives = 280/336 (83%), Gaps = 8/336 (2%)

Query: 1   MEIHEEHRD------HQSQHLPRVLVIKPPPPLTLFGDK-FISRSFQLLKAYESSLSLEQ 53
           ME  EE +D      H+ Q LP+VL++KPPP L++ G++ F+S+ +Q LKA+ES L L Q
Sbjct: 1   MENQEEQQDNTSDQNHKPQDLPQVLLLKPPPVLSVIGEQPFLSKKYQFLKAWESPLPLLQ 60

Query: 54  FLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAG 113
           FL +HA SI+AILCSG +PVT D+L+LLP +RLVVTASAG NHI +  C RRGI+V NAG
Sbjct: 61  FLTAHADSIQAILCSGAAPVTDDLLQLLPSVRLVVTASAGTNHIDLEACHRRGISVTNAG 120

Query: 114 SIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIG 173
           ++FSDD ADAAVGLLIDV RKI+++DR++RQGLW   GDYPLGSKL GKRVGIVGLG IG
Sbjct: 121 NVFSDDGADAAVGLLIDVLRKITASDRYVRQGLWVNKGDYPLGSKLRGKRVGIVGLGGIG 180

Query: 174 LQVAKRLQAFGCNVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINRE 232
           L++AKRL+AFGCNVLYNSR KK  + Y FYS+V +LAANSDALIICCALT+QTR MI+++
Sbjct: 181 LEIAKRLEAFGCNVLYNSRKKKAHLSYPFYSDVRQLAANSDALIICCALTNQTRHMIDKD 240

Query: 233 VMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVL 292
           V  ALGKEG+IVN+GRGA++DE EMVRCLV GEIAGAGLDVFENEP VPKEL ELDNVVL
Sbjct: 241 VFSALGKEGVIVNIGRGAIVDEKEMVRCLVHGEIAGAGLDVFENEPDVPKELFELDNVVL 300

Query: 293 QPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPV 328
            PHRAVFTSE F+ LCEL VGNLEA FSN PLLSPV
Sbjct: 301 SPHRAVFTSESFMALCELVVGNLEAFFSNTPLLSPV 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106635|dbj|BAJ53141.1| JHL05D22.12 [Jatropha curcas]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/321 (66%), Positives = 251/321 (78%), Gaps = 2/321 (0%)

Query: 13  QHLPRVLVIKPPPPLTLF-GDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDS 71
           + LP+VL++K PP    F G+ F S  FQ LKAYES L L QFL +HA S++A+L SG +
Sbjct: 11  EDLPKVLLLKKPPSFQFFEGESFTSTKFQYLKAYESPLPLHQFLAAHAQSVQAVLASGGA 70

Query: 72  PVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDV 131
            +  DIL+LLP +R+VVT SAG+N I +PECRRRGIA+ANAG ++S D AD AVGLLIDV
Sbjct: 71  SINADILQLLPAVRVVVTTSAGLNQIDIPECRRRGIAIANAGDVYSADVADLAVGLLIDV 130

Query: 132 WRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNS 191
            RKIS++DR++RQGLW+  GDYPLG+KL GKR GIVGLG IG +VAKRL+AFGC + YNS
Sbjct: 131 LRKISASDRYVRQGLWATKGDYPLGAKLSGKRAGIVGLGRIGYEVAKRLEAFGCYISYNS 190

Query: 192 RSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGA 250
           R KKP V Y FY NV ELAAN DALIICC LT QT  MIN+EV+ ALGK+G+IVN+GRGA
Sbjct: 191 RKKKPNVSYPFYQNVSELAANCDALIICCGLTKQTFHMINKEVLSALGKKGVIVNIGRGA 250

Query: 251 VIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCEL 310
           +IDE EMVRCLV GEIAGAGLDVFENEP VPKE   ++NVVL PH AVFT E   DL EL
Sbjct: 251 IIDEKEMVRCLVAGEIAGAGLDVFENEPDVPKEFFTMENVVLSPHTAVFTPESLKDLSEL 310

Query: 311 AVGNLEALFSNQPLLSPVTAE 331
            VGNLEA FSN+PLLS    E
Sbjct: 311 VVGNLEAFFSNKPLLSEYMDE 331

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106634|dbj|BAJ53140.1| JHL05D22.11 [Jatropha curcas]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/325 (66%), Positives = 265/325 (81%), Gaps = 3/325 (0%)

Query: 6   EHRDHQSQHL-PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEA 64
           ++ DHQ ++L P+VLV++ PPPL  F +  +S+ F+ LKA+ES L L QFLISHA SI+ 
Sbjct: 7   QNHDHQQENLLPQVLVLE-PPPLFKFHEDQLSQKFRFLKAWESPLPLNQFLISHASSIQV 65

Query: 65  ILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAA 124
           +L SG  PVT D LRLLP LR++VT SAG+NHI +  CR RGI +A+AGS++S+D AD A
Sbjct: 66  LLSSGTCPVTADTLRLLPSLRVLVTTSAGLNHIDLQACRERGIPIASAGSVYSEDVADIA 125

Query: 125 VGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFG 184
           VGLLIDV RKIS++DR++RQ  W   GD PLGSKL G++VGIVGLGNIGL+VAKRL+AFG
Sbjct: 126 VGLLIDVIRKISASDRYVRQDSWPIKGDSPLGSKLRGRQVGIVGLGNIGLEVAKRLEAFG 185

Query: 185 CNVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGII 243
           CN+LYNSR KKP V Y +YSNVCELAAN + LIICC L+ QT  +IN+EV+  LGK+G+I
Sbjct: 186 CNILYNSRKKKPSVIYPYYSNVCELAANCNVLIICCGLSKQTHHLINKEVLSELGKDGVI 245

Query: 244 VNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSEC 303
           +NVGRGA+IDE EMV+CL++G IAGAGLDVFENEP VPKEL+ELDNVVL PHRA  TSE 
Sbjct: 246 INVGRGAIIDEQEMVQCLMQGTIAGAGLDVFENEPNVPKELVELDNVVLSPHRAAHTSET 305

Query: 304 FVDLCELAVGNLEALFSNQPLLSPV 328
            +DLC+L +GNLEA FSN+PLLSPV
Sbjct: 306 LMDLCQLVIGNLEAFFSNKPLLSPV 330

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541390|ref|XP_002511759.1| glycerate dehydrogenase, putative [Ricinus communis] gi|223548939|gb|EEF50428.1| glycerate dehydrogenase, putative [Ricinus communis]

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/331 (63%), Positives = 261/331 (78%), Gaps = 2/331 (0%)

Query: 1   MEIHEEHRDHQSQHLPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAH 60
           M  H ++       LP VLV++  P    F +  +S+ F  LKA+ES L L QFL +HA+
Sbjct: 1   MANHPQNYQQPQSLLPEVLVLERSPVFK-FHEHRLSQKFHFLKAWESQLPLHQFLAAHAY 59

Query: 61  SIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDA 120
           S++ +L SG  PVT + +RLLP LRL+VT SAG+NHI + ECRR+GIA+A AGS++S+D 
Sbjct: 60  SVQVLLSSGRDPVTANNIRLLPSLRLIVTTSAGLNHIDLQECRRQGIAIATAGSLYSEDV 119

Query: 121 ADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRL 180
           AD  VGL IDV RKIS++D+++RQG W   GD+PLG KL G++VGIVGLG+IGL+VAKR+
Sbjct: 120 ADLTVGLFIDVLRKISASDQYVRQGSWPTKGDFPLGFKLRGRQVGIVGLGSIGLEVAKRV 179

Query: 181 QAFGCNVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGK 239
           +AFGC ++YNSR+KKP VPY +YSNVCELAAN D LIICC LTDQTR MIN+EV  ALGK
Sbjct: 180 EAFGCKIMYNSRNKKPSVPYPYYSNVCELAANCDVLIICCGLTDQTRHMINKEVFEALGK 239

Query: 240 EGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVF 299
           EG+IVNVGRG +IDE EMV+ LV+GEIAGAGLDVFENEP+VPKEL  L+NVVL PHRAV 
Sbjct: 240 EGVIVNVGRGVIIDEQEMVQRLVQGEIAGAGLDVFENEPHVPKELTVLNNVVLSPHRAVH 299

Query: 300 TSECFVDLCELAVGNLEALFSNQPLLSPVTA 330
           T+E  V LCEL +GNLEA FSN+PLL+P+TA
Sbjct: 300 TTENLVALCELVIGNLEAFFSNKPLLTPITA 330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063945|ref|XP_002301314.1| predicted protein [Populus trichocarpa] gi|222843040|gb|EEE80587.1| predicted protein [Populus trichocarpa]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/326 (64%), Positives = 259/326 (79%), Gaps = 2/326 (0%)

Query: 4   HEEHRDHQSQHLPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIE 63
           H+E+ D      P+VLV++PPP      DK +S+ F  LKA++S L L+QFL +HAHS++
Sbjct: 7   HQENHDQNLFPKPKVLVLEPPPVFKYHEDK-LSQKFHFLKAWDSPLPLDQFLTTHAHSVQ 65

Query: 64  AILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADA 123
           AIL  G  PVT   +RLLP L L+VT S+G+N I + ECRRRG++VA AGS+FS D AD 
Sbjct: 66  AILSHGTCPVTTSTIRLLPSLGLIVTTSSGLNQIDLQECRRRGVSVAYAGSLFSADVADI 125

Query: 124 AVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAF 183
           AVGLLID  RKIS+ +R++ QGLW+  GD+ LGSKLGG++VGIVGLG+IGL+V KRL+ F
Sbjct: 126 AVGLLIDALRKISAGNRYVTQGLWANNGDFSLGSKLGGRKVGIVGLGSIGLEVGKRLEPF 185

Query: 184 GCNVLYNSRSKK-PVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGI 242
           GCN+LY+SR+KK  V Y +YSNVCELAAN + LIICC L DQTR MIN+EV+LALGK+G+
Sbjct: 186 GCNILYSSRNKKSSVSYPYYSNVCELAANCEVLIICCELNDQTRHMINKEVLLALGKKGL 245

Query: 243 IVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSE 302
           I+NVGRGA+IDE EMVRCL++GEIAGAGLDVFENEP+VP EL+ LDNVVL PHRAV T E
Sbjct: 246 IINVGRGAIIDEQEMVRCLMQGEIAGAGLDVFENEPHVPSELIALDNVVLSPHRAVHTEE 305

Query: 303 CFVDLCELAVGNLEALFSNQPLLSPV 328
             + L EL +GNLEA FSN+PLLSPV
Sbjct: 306 TLMALVELVIGNLEAFFSNKPLLSPV 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489392|ref|XP_003633919.1| PREDICTED: glyoxylate reductase isoform 1 [Vitis vinifera]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/322 (66%), Positives = 257/322 (79%), Gaps = 2/322 (0%)

Query: 11  QSQHLPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGD 70
           + + LP++L++KPP   + F  KF S  FQLLKA+ES L    FL +HAHS++A++ S  
Sbjct: 21  EEEALPQLLILKPPSLFSDFQYKF-SPKFQLLKAWESPLPTTLFLTTHAHSVKAVVSSSS 79

Query: 71  SPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLID 130
           SP+T DILR LP L+LVV  + G+N I +PECRRRGI++ANAG I S+D AD  VGL ID
Sbjct: 80  SPITSDILRHLPSLQLVVATTVGLNQIDLPECRRRGISIANAGKILSEDCADMGVGLFID 139

Query: 131 VWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYN 190
           V +KIS+ DRF+R GLW    D+PLGSKLGGKRVGIVGLG+IGL+VAKRL+AFGC +LYN
Sbjct: 140 VLKKISAGDRFVRSGLWPIQKDFPLGSKLGGKRVGIVGLGSIGLEVAKRLEAFGCIILYN 199

Query: 191 SRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRG 249
           SR KK  + Y FYSNVCELAANS+ALIICCALTD+TR MIN+EVM ALGKEG+I+N+GRG
Sbjct: 200 SRRKKANISYPFYSNVCELAANSNALIICCALTDETRHMINKEVMKALGKEGVIINIGRG 259

Query: 250 AVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCE 309
           A+IDE E+V+CLV+GEI GAGLDVFENEP VPKEL  LDNVVL PH AVFT E F DL +
Sbjct: 260 AIIDEKELVQCLVQGEIGGAGLDVFENEPDVPKELFTLDNVVLSPHVAVFTQESFSDLYD 319

Query: 310 LAVGNLEALFSNQPLLSPVTAE 331
           L VGNLEA FSN+ LLSPV  E
Sbjct: 320 LMVGNLEAFFSNKTLLSPVLDE 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127466|ref|XP_002320081.1| predicted protein [Populus trichocarpa] gi|222860854|gb|EEE98396.1| predicted protein [Populus trichocarpa]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/320 (66%), Positives = 260/320 (81%), Gaps = 3/320 (0%)

Query: 10  HQSQH-LPRVLVIKPPPPLTLFGDKFI-SRSFQLLKAYESSLSLEQFLISHAHSIEAILC 67
           H++Q   P+VL++KP   L   G++ + S  F  LKAYESSL L QFL +H+ SI+AIL 
Sbjct: 8   HKAQQDFPKVLILKPISFLAHVGERHVASNKFTFLKAYESSLPLHQFLSTHSPSIKAILS 67

Query: 68  SGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGL 127
           S  +P+T DIL+LLP++ +VVT S G+N + +PECRRRGI VANAGS+FSDD AD AVGL
Sbjct: 68  SVGTPITADILQLLPEVGVVVTTSVGLNQVDLPECRRRGIKVANAGSVFSDDVADFAVGL 127

Query: 128 LIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNV 187
           LIDV RK+S++D ++R+GLW+  GDYPLGSKLGGKR+GIVGLGNIG  VAKRL+AFGC++
Sbjct: 128 LIDVLRKVSASDGYVRKGLWATKGDYPLGSKLGGKRIGIVGLGNIGFAVAKRLEAFGCSI 187

Query: 188 LYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNV 246
            YNSR +KP V Y FY +VCELAAN D L+ICC LTDQTR MIN+EV+ ALGKEG+IVN+
Sbjct: 188 SYNSRKRKPHVSYPFYESVCELAANCDVLVICCELTDQTRHMINKEVLSALGKEGVIVNI 247

Query: 247 GRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVD 306
           GRGA+I+E EMV+CLV+GEIAGAGLDVFENEP VP EL  +DNVVL PH AVFT E F+D
Sbjct: 248 GRGAIINEKEMVQCLVQGEIAGAGLDVFENEPDVPVELFAMDNVVLSPHIAVFTPESFLD 307

Query: 307 LCELAVGNLEALFSNQPLLS 326
           L +L +GNLEA FSN+PLLS
Sbjct: 308 LMDLVMGNLEAFFSNKPLLS 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541386|ref|XP_002511757.1| glycerate dehydrogenase, putative [Ricinus communis] gi|223548937|gb|EEF50426.1| glycerate dehydrogenase, putative [Ricinus communis]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/316 (63%), Positives = 246/316 (77%), Gaps = 2/316 (0%)

Query: 13  QHLPRVLVIKPPPPLTLFGDK-FISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDS 71
           +  P+VL+   PP  T+ G++ F S  F+ LKAYES L L QFL  HA S++AIL SG +
Sbjct: 8   ESFPKVLLFIKPPAFTVIGEESFTSTKFRYLKAYESPLPLHQFLAQHAQSVQAILSSGGA 67

Query: 72  PVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDV 131
           PVT DILR LP +R++VT SAG+N I +PECRRRGI++ANAG ++S D AD A+GLLIDV
Sbjct: 68  PVTADILRFLPSVRVIVTTSAGLNQIDLPECRRRGISIANAGDVYSADVADLAIGLLIDV 127

Query: 132 WRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNS 191
            R IS++DR+++QGLWS  GDYPLG KL GKR+GIVGLG+IG +VAKRL AFGC + YNS
Sbjct: 128 LRNISASDRYVKQGLWSSKGDYPLGFKLSGKRIGIVGLGSIGYEVAKRLDAFGCYISYNS 187

Query: 192 RSKK-PVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGA 250
           R +K  V Y FY NVCELAAN DAL+ICC LTDQT  MIN +V  ALGK G++VN+GRG 
Sbjct: 188 RKQKFYVSYPFYPNVCELAANCDALVICCGLTDQTFHMINEQVFSALGKNGVVVNIGRGP 247

Query: 251 VIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCEL 310
           +IDE E++RCLV GEIAGAGLDVFENEP +P+E + ++NVVL PH AVFT E   DL EL
Sbjct: 248 IIDEKELIRCLVEGEIAGAGLDVFENEPNIPQEFVSMNNVVLSPHCAVFTPESMKDLSEL 307

Query: 311 AVGNLEALFSNQPLLS 326
            VGNLEA F+N+PLLS
Sbjct: 308 VVGNLEAFFANKPLLS 323

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063943|ref|XP_002301313.1| predicted protein [Populus trichocarpa] gi|222843039|gb|EEE80586.1| predicted protein [Populus trichocarpa]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/289 (69%), Positives = 239/289 (82%), Gaps = 1/289 (0%)

Query: 39  FQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIH 98
           FQ LK Y+S L L+QFL +H+HSI+AIL SG +PV  DIL+LLP++ +VVT SAG+N I 
Sbjct: 3   FQFLKTYDSQLPLDQFLSTHSHSIKAILSSGGAPVNADILQLLPEVGVVVTTSAGLNQID 62

Query: 99  MPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSK 158
           +PECRRRGI +ANAG ++S D AD AVGLLIDV RK+S++DR++RQGLW+  G+YPLGSK
Sbjct: 63  IPECRRRGIKIANAGYVYSADVADMAVGLLIDVLRKVSASDRYVRQGLWAAKGNYPLGSK 122

Query: 159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-VPYAFYSNVCELAANSDALII 217
           L GKR GIVGLGNIG +VAKRL+AFGC V YNSR KKP V Y FY +VCELAAN DALII
Sbjct: 123 LSGKRAGIVGLGNIGYEVAKRLEAFGCFVSYNSRKKKPNVSYPFYHDVCELAANCDALII 182

Query: 218 CCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENE 277
           CC L+D+TR MIN++V+ ALGKEG+IVN+GRGA+IDE EMVRCL++GEIAGAGLDVFE E
Sbjct: 183 CCGLSDETRHMINKQVLSALGKEGVIVNIGRGAIIDEKEMVRCLMQGEIAGAGLDVFETE 242

Query: 278 PYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLS 326
           P VPKE   +DNVVL PHRAVFT E   DL +L VGNLEA  SN+PLLS
Sbjct: 243 PSVPKEFFAMDNVVLSPHRAVFTPESLKDLSQLVVGNLEAFLSNKPLLS 291

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
TAIR|locus:2043684	338	AT2G45630 [Arabidopsis thalian	0.957	0.937	0.593	5.2e-97
TAIR|locus:2034665	323	HPR3 "hydroxypyruvate reductas	0.942	0.965	0.542	3.3e-86
TAIR|locus:2017824	313	AT1G79870 [Arabidopsis thalian	0.909	0.961	0.404	1.9e-60
TIGR_CMR|SPO_2422	313	SPO_2422 "D-isomer specific 2-	0.725	0.766	0.389	1.6e-40
UNIPROTKB|Q483F8	311	CPS_2082 "Putative glyoxylate	0.728	0.774	0.334	2.7e-36
TIGR_CMR|CPS_2082	311	CPS_2082 "putative glyoxylate	0.728	0.774	0.334	2.7e-36
TIGR_CMR|SPO_0913	317	SPO_0913 "D-isomer specific 2-	0.709	0.741	0.374	9.2e-36
TIGR_CMR|SPO_0632	328	SPO_0632 "D-isomer specific 2-	0.688	0.695	0.355	1.1e-34
TIGR_CMR|BA_1434	323	BA_1434 "D-isomer specific 2-h	0.845	0.866	0.334	6.7e-33
UNIPROTKB|Q0BWN7	328	gyaR "Glyoxylate reductase" [H	0.679	0.685	0.353	1.8e-32

TAIR|locus:2043684 AT2G45630 [Arabidopsis thaliana (taxid:3702)]

 Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
 Identities = 190/320 (59%), Positives = 241/320 (75%)

Query:    12 SQHLPRVLVIKPPPPLTLFGDKFI-SRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGD 70
             ++ LPRVL++K P  + + GD F+ S  F++LKA+ES L L +FL  H+ SI AI+    
Sbjct:    18 TEKLPRVLIVKRPDAMAVLGDGFVASTKFEILKAFESPLPLPEFLAYHSDSISAIIAPVA 77

Query:    71 SPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLID 130
             +PVT            VVT SAGV+H+ + ECRRRGI+VANAGS FS+D AD AVGLLID
Sbjct:    78 APVTADLIRILPNLRLVVTTSAGVDHVDLVECRRRGISVANAGSSFSEDVADTAVGLLID 137

Query:   131 VWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYN 190
             V+R+IS+A+RF++Q  W   GDYPLGSKLG KR+GIVGLG+IG +VA RL AFGC + Y+
Sbjct:   138 VFRRISAANRFVKQRFWPLKGDYPLGSKLGRKRIGIVGLGSIGSKVATRLDAFGCQISYS 197

Query:   191 SRSKKP--VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGR 248
             SR++KP  VPY +Y ++ E+AANSDALIICC L ++T R+IN++V+ ALGK G+IVNV R
Sbjct:   198 SRNRKPYDVPYHYYMDIEEMAANSDALIICCELNEKTLRLINKDVLSALGKRGVIVNVAR 257

Query:   249 GAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLC 308
             GA+IDE EMVRCL  GEI GAGLDVFE+EP VPKEL ELDNVV  PH A  T E   +L 
Sbjct:   258 GAIIDEEEMVRCLREGEIGGAGLDVFEDEPNVPKELFELDNVVFSPHSAFMTLEGLEELG 317

Query:   309 ELAVGNLEALFSNQPLLSPV 328
             ++ VGN+EA FSN+PLL+PV
Sbjct:   318 KVVVGNIEAFFSNKPLLTPV 337

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA;ISS

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2034665 HPR3 "hydroxypyruvate reductase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 171/315 (54%), Positives = 223/315 (70%)

Query:    16 PRVLVIKPPPPLTLFGDKFISRSFQ-LLKAYESSLSLEQFLISHAHSIEAILCSGDSPVT 74
             P V+++  PP LT F D+ ++R F+ L+    SS SL  F   HA S  A + SG  PVT
Sbjct:     7 PPVVLLHRPPSLT-FMDEILTREFRTLITDTSSSESLPSFFPRHASSARAFVISGRLPVT 65

Query:    75 XXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRK 134
                         +V  S G++HI +  C+RRGI + NAG+ FSDD AD AVGLLI V R+
Sbjct:    66 DELLSHLPSLQILVCTSVGIDHIDLAACKRRGIVITNAGNAFSDDVADCAVGLLISVLRR 125

Query:   135 ISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK 194
             I +ADR++R G W+K GD+ LGSK+ GKRVGIVGLG+IG  VAKRL++FGC + YNSRS+
Sbjct:   126 IPAADRYVRSGNWAKFGDFQLGSKVSGKRVGIVGLGSIGSFVAKRLESFGCVISYNSRSQ 185

Query:   195 KPV-PYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVID 253
             K   PY +YS++  LA N+D L++CC+LTD+T  ++NREVM  LGK+G+++NVGRG +ID
Sbjct:   186 KQSSPYRYYSDILSLAENNDVLVLCCSLTDETHHIVNREVMELLGKDGVVINVGRGKLID 245

Query:   254 ENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVG 313
             E EMV+CLV G I GAGLDVFENEP VP+EL  LDNVVL PH AV T     ++ ++A+ 
Sbjct:   246 EKEMVKCLVDGVIGGAGLDVFENEPAVPQELFGLDNVVLSPHFAVATPGSLDNVAQIALA 305

Query:   314 NLEALFSNQPLLSPV 328
             NL+A FSN+PLLSPV
Sbjct:   306 NLKAFFSNRPLLSPV 320

GO:0005737 "cytoplasm" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0009853 "photorespiration" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

TAIR|locus:2017824 AT1G79870 [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 123/304 (40%), Positives = 189/304 (62%)

Query:    26 PLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXX 85
             P++ + +  + + F LL+ + S       L +H +SI A++ +  +              
Sbjct:    11 PMSSYLENELEKRFNLLRFWTSP-EKSVLLETHRNSIRAVVGNASAGADAQLISDLPNLE 69

Query:    86 XVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQG 145
              V + S G++ I + +C+ +GI V N   + ++D AD A+GL++ + R++   DR++R G
Sbjct:    70 IVSSFSVGLDKIDLGKCKEKGIRVTNTPDVLTEDVADLAIGLILALLRRLCECDRYVRSG 129

Query:   146 LWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-VPYAFYSN 204
              W K G++ L +K  GK VGI+GLG IG  +AKR +AF C + Y SR+ KP V Y +Y  
Sbjct:   130 KW-KQGEFQLTTKFSGKSVGIIGLGRIGTAIAKRAEAFSCPINYYSRTIKPDVAYKYYPT 188

Query:   205 VCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264
             V +LA NSD L++ C LT+QTR +++R+VM ALG +G+++N+GRG  +DE E+++ L  G
Sbjct:   189 VVDLAQNSDILVVACPLTEQTRHIVDRQVMDALGAKGVLINIGRGPHVDEQELIKALTEG 248

Query:   265 EIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPL 324
              + GA LDVFE EP+VP+EL  L+NVVL PH    T E    + +L VGNLEA FS + L
Sbjct:   249 RLGGAALDVFEQEPHVPEELFGLENVVLLPHVGSGTVETRNAMADLVVGNLEAHFSGKSL 308

Query:   325 LSPV 328
             L+PV
Sbjct:   309 LTPV 312

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0009854 "oxidative photosynthetic carbon pathway" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TIGR_CMR|SPO_2422 SPO_2422 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 95/244 (38%), Positives = 142/244 (58%)

Query:    88 VTASAGVNH--IHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQG 145
             V A+ GV +  I +     RGI V N   + +DD AD AV +L+   R++     ++R+G
Sbjct:    68 VIANFGVGYDAIDVAAATARGITVTNTPGVLNDDVADLAVTMLLMQCRRMEQGGAWVREG 127

Query:   146 LWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVP-YAFYSN 204
              W +  ++PL  K  G   G+VGLG IG ++A RL AF  ++ Y +RS+K  P + ++++
Sbjct:   128 HW-ETANFPLNRKASGGVAGVVGLGRIGREIADRLAAFKMDIHYFARSEKDTPGWTYHAD 186

Query:   205 VCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264
                LA   D L++      +T + I+REV+ ALG  G++VN+ RG+ IDE  ++  L RG
Sbjct:   187 PVSLAKAVDFLVVALVGGPETEKFISREVIEALGPRGVVVNISRGSTIDETALLDALERG 246

Query:   265 EIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPL 324
              IAGA LDVF NEP +    L L NVVLQPH+   T E    +  L  GN+ A  + +P+
Sbjct:   247 RIAGAALDVFLNEPTIDPRFLALSNVVLQPHQGSGTVETRAAMGALQRGNIAAHLAGKPV 306

Query:   325 LSPV 328
             L+PV
Sbjct:   307 LTPV 310

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|Q483F8 CPS_2082 "Putative glyoxylate reductase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 83/248 (33%), Positives = 137/248 (55%)

Query:    87 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
             +     G ++I +     +GIAV N   + ++D AD A  L++   R++++ ++FLR G 
Sbjct:    64 IANIGVGYDNIDLAAATAKGIAVTNT-PVVTEDTADLAFSLILAASRQLTANEKFLRNGQ 122

Query:   147 WSKIGDYP-LGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK-----PVPYA 200
             WS       LG  + G ++GI+G G IG  VA+R +AF   + Y+   +K      +   
Sbjct:   123 WSATNPIGCLGKTVHGAKLGIIGFGEIGQAVARRAKAFNMEIFYHGPRRKIDAEVSLEAV 182

Query:   201 FYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRC 260
             ++ N+ ++ A SD + I C L + T  +IN + +  +  + I+VN GRG +IDE+ +V  
Sbjct:   183 YFENLTDMLAASDIISINCPLNENTHHLINADTIATMRPDAILVNTGRGPLIDESALVGA 242

Query:   261 LVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFS 320
             + +G +  AGLDVFE+EP +  +LL L NV L PH    TS+C   +   A+GN+ A   
Sbjct:   243 MKKGHLFAAGLDVFEHEPEIHDQLLTLPNVTLTPHIGSATSQCRGAMAACAIGNILAQME 302

Query:   321 NQPLLSPV 328
              + LL+ V
Sbjct:   303 GRILLTSV 310

GO:0008152 "metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

TIGR_CMR|CPS_2082 CPS_2082 "putative glyoxylate reductase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 83/248 (33%), Positives = 137/248 (55%)

Query:    87 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
             +     G ++I +     +GIAV N   + ++D AD A  L++   R++++ ++FLR G 
Sbjct:    64 IANIGVGYDNIDLAAATAKGIAVTNT-PVVTEDTADLAFSLILAASRQLTANEKFLRNGQ 122

Query:   147 WSKIGDYP-LGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK-----PVPYA 200
             WS       LG  + G ++GI+G G IG  VA+R +AF   + Y+   +K      +   
Sbjct:   123 WSATNPIGCLGKTVHGAKLGIIGFGEIGQAVARRAKAFNMEIFYHGPRRKIDAEVSLEAV 182

Query:   201 FYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRC 260
             ++ N+ ++ A SD + I C L + T  +IN + +  +  + I+VN GRG +IDE+ +V  
Sbjct:   183 YFENLTDMLAASDIISINCPLNENTHHLINADTIATMRPDAILVNTGRGPLIDESALVGA 242

Query:   261 LVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFS 320
             + +G +  AGLDVFE+EP +  +LL L NV L PH    TS+C   +   A+GN+ A   
Sbjct:   243 MKKGHLFAAGLDVFEHEPEIHDQLLTLPNVTLTPHIGSATSQCRGAMAACAIGNILAQME 302

Query:   321 NQPLLSPV 328
              + LL+ V
Sbjct:   303 GRILLTSV 310

GO:0008152 "metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

TIGR_CMR|SPO_0913 SPO_0913 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 91/243 (37%), Positives = 133/243 (54%)

Query:    93 GVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGD 152
             G NHI +   R  G+AV N     +D  AD A+ LL+   R+    +R +R G W   G 
Sbjct:    77 GYNHIAVAAARAAGVAVTNTPGAVTDATADIAMTLLLMTARRAGEGERLVRSGAWE--GW 134

Query:   153 YP---LGSKLGGKRVGIVGLGNIGLQVAKRLQ-AFGCNVLYNSRSKKPV--PYAFYSNVC 206
             +P   LG  + GK VGIVGLG IG  +A+R    FG  V Y +RS K V  P +   ++ 
Sbjct:   135 HPTQMLGHHVTGKHVGIVGLGRIGQAIARRCHFGFGMQVSYVARSDKDVDFPVSRMESLA 194

Query:   207 ELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEI 266
              LA   D L+I      +TR +I+ +++ A+   GI+VN+ RG V+DE  ++  L   +I
Sbjct:   195 ALAGAVDFLVIAVPGGGETRHLIDAQILAAMKPSGILVNIARGEVVDEAALIAALSERQI 254

Query:   267 AGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLS 326
             AGAGLDV+E EP VP+ L  ++ V L PH    T E    +  +A+ N+ A  + + L +
Sbjct:   255 AGAGLDVYEFEPKVPEALRAMEQVTLLPHLGTATEEVRSSMGHMALDNVAAFAAGRDLPN 314

Query:   327 PVT 329
             PV+
Sbjct:   315 PVS 317

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|SPO_0632 SPO_0632 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 85/239 (35%), Positives = 136/239 (56%)

Query:    87 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
             +    AGV+HI +   R+RGI V+N   + +DD AD  + L++ V R+I      +++  
Sbjct:    75 IANYGAGVDHIDVATARQRGILVSNTPGVLTDDTADMTMALILAVTRRIPEGLAVMQKNE 134

Query:   147 WSKIGDYP---LGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK-KP-----V 197
             W+  G  P   LG ++GG+R+GI+G+G IG  VA+R  AFG  + Y++R + +P     +
Sbjct:   135 WT--GWAPTALLGGRVGGRRLGILGMGRIGQAVARRASAFGMQIHYHNRRRLRPEVEDAL 192

Query:   198 PYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEM 257
                ++ ++ ++ A  D + + C  T  T  ++N   +  +   G+IVN  RG VIDEN +
Sbjct:   193 EATWWDSLDQMIARMDVISVNCPSTPSTFHLMNARRLKLMKPTGVIVNTSRGEVIDENAL 252

Query:   258 VRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLE 316
              R +  GEIAGAGLDV+E+   V   L EL NVVL PH    T E  +++ E  + N++
Sbjct:   253 TRMIRTGEIAGAGLDVYEHGTQVNPRLRELPNVVLLPHMGSATLEGRIEMGEKVIINIK 311

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|BA_1434 BA_1434 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 97/290 (33%), Positives = 141/290 (48%)

Query:    46 ESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRR 105
             E  +SL++ L       +A+L    + VT            V    AG ++I       +
Sbjct:    29 EELISLDE-LTERVKDKDALLSLLSTKVTKEVIDAAPSLKIVANYGAGYDNIDYTYAGEK 87

Query:   106 GIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQ-GL--WSKIGDYPLGSKLGGK 162
             GIAV N   + ++  A+    LL+   R+I   D   R  G   W+ +  + LG ++ GK
Sbjct:    88 GIAVTNTPKVSTEATAELTFALLLAAARRIPEGDTLCRTTGFNGWAPL--FFLGREVHGK 145

Query:   163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPY----AFYSNVCELAANSDALIIC 218
              +GI+GLG IG  VAKR +AFG N+LY   ++KP       A Y  + EL   +D + I 
Sbjct:   146 TIGIIGLGEIGKAVAKRAKAFGMNILYTGPNRKPEAESELEATYVTLEELLQTADFITIN 205

Query:   219 CALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEP 278
             CA   +   MI+ E    + K   IVN  RG ++ E  +   L   EI GA LDVFE EP
Sbjct:   206 CAYNPKLHHMIDEEQFKMMKKTAYIVNASRGPIMHEAALAHALKTNEIEGAALDVFEFEP 265

Query:   279 YVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPV 328
              + +EL  L NVVL PH    T E    + E+AV N+ A+   +  ++PV
Sbjct:   266 KITEELKGLKNVVLAPHVGNATFETRDAMAEMAVRNILAVLKGEEPVTPV 315

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|Q0BWN7 gyaR "Glyoxylate reductase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 82/232 (35%), Positives = 130/232 (56%)

Query:    92 AGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK-I 150
             AGV++I +    +RGI V N   + +DD AD A+ L++ V R++    + +  G +    
Sbjct:    80 AGVDNIDVASAVQRGITVTNTPGVLTDDTADVAMALILAVPRRMHEGVQIMEAGKFDGWT 139

Query:   151 GDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYN------SRSKKPVPYAFYSN 204
               + +G +L GKR+GI+G+G IG  VA+R +AFG  + Y+      SR ++ +   ++ +
Sbjct:   140 PTWMMGRRLSGKRLGIIGMGRIGQAVARRARAFGMQIHYHNRKPVSSRIEESLEATYWDS 199

Query:   205 VCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264
             + ++ A  D + I C  T  T  +IN   +  +  E  I+N  RG VIDE  + R +  G
Sbjct:   200 LDQMLARMDIVSINCPHTPATFHLINARRLGLMKPEAYIINTARGEVIDEAALARAIRAG 259

Query:   265 EIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLE 316
             +IAGAGLDVFE EP V  EL+ L NV+L PH    T E   ++ E  + N++
Sbjct:   260 KIAGAGLDVFEREPAVNPELIGLPNVLLLPHMGSATIEGRTEMGEKVIINIK 311

GO:0046487 "glyoxylate metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5JEZ2	GYAR_PYRKO	1, ., 1, ., 1, ., 2, 6	0.3428	0.9123	0.9069	yes	no
B1L765	GYAR_KORCO	1, ., 1, ., 1, ., 2, 6	0.3344	0.9033	0.9006	yes	no
O32264	TKRA_BACSU	1, ., 1, ., 1, ., 2, 1, 5	0.3101	0.9154	0.9323	yes	no
B6YWH0	GYAR_THEON	1, ., 1, ., 1, ., 2, 6	0.3386	0.9093	0.9011	yes	no
Q9YAW4	GYAR_AERPE	1, ., 1, ., 1, ., 2, 6	0.3386	0.9063	0.8955	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00026304001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (321 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00022240001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (401 aa)	•					•	•		0.486

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	331
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	1e-139
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	3e-95
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	9e-89
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	1e-78
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	4e-76
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	1e-69
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	2e-69
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	1e-68
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	3e-68
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	1e-63
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	5e-62
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	2e-60
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	2e-60
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	7e-60
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	7e-59
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	1e-58
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	3e-58
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	1e-57
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	2e-56
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	3e-53
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	3e-53
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	9e-51
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	9e-49
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	2e-48
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	8e-48
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	5e-47
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	2e-46
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	2e-45
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	1e-44
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	4e-44
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	8e-43
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	1e-39
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	1e-39
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	4e-39
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	3e-38
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	4e-35
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	2e-34
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	3e-34
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	5e-34
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	1e-32
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	5e-32
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	7e-32
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	2e-30
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	2e-29
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	3e-29
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	5e-29
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	9e-28
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	2e-27
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	4e-26
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	5e-26
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	6e-26
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	2e-24
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	8e-24
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	4e-23
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	2e-17
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	7e-16
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	5e-15
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	4e-13
PRK15469	312	PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr	6e-13
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	6e-12
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	9e-09
COG2084	286	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase	2e-05
pfam03446	163	pfam03446, NAD_binding_2, NAD binding domain of 6-	0.003

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  396 bits (1019), Expect = e-139
 Identities = 137/306 (44%), Positives = 191/306 (62%), Gaps = 6/306 (1%)

Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTL 75
           P VL + P PP  L     +   F + + +E++      L  H   I A++ +G++ ++ 
Sbjct: 1   PDVLQLGPLPPELL---AELEARFTVHRLWEAA-DPAALLAEHGGRIRAVVTNGETGLSA 56

Query: 76  DILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKI 135
            ++  LP L L+ +   G + I +   R RGI V N   + +DD AD AVGLL+ V R+I
Sbjct: 57  ALIAALPALELIASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVADLAVGLLLAVLRRI 116

Query: 136 SSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK 195
            +ADRF+R G W K G +PL  K+ GKRVGIVGLG IG  +A+RL+AFG  + Y+ R  K
Sbjct: 117 PAADRFVRAGRWPK-GAFPLTRKVSGKRVGIVGLGRIGRAIARRLEAFGMEIAYHGRRPK 175

Query: 196 P-VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDE 254
           P VPY +Y+++ ELAA SD L++ C     TR ++N EV+ ALG +G++VNV RG+V+DE
Sbjct: 176 PDVPYRYYASLLELAAESDVLVVACPGGPATRHLVNAEVLEALGPDGVLVNVARGSVVDE 235

Query: 255 NEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN 314
             ++  L  G IAGAGLDVFENEP VP  LL+LDNVVL PH A  T E    + +L + N
Sbjct: 236 AALIAALQEGRIAGAGLDVFENEPNVPAALLDLDNVVLTPHIASATVETRRAMGDLVLAN 295

Query: 315 LEALFS 320
           LEA F+
Sbjct: 296 LEAFFA 301

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  284 bits (730), Expect = 3e-95
 Identities = 124/328 (37%), Positives = 174/328 (53%), Gaps = 18/328 (5%)

Query: 16  PRVLVIKPPPP--LTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPV 73
             VL  +  PP  L    +KF       ++ YE  L+ +  L       +A++   +  +
Sbjct: 3   IVVLSTRKLPPEVLERLKEKFE------VERYEDDLTPDTELAERLKDADAVITFVNDRI 56

Query: 74  TLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWR 133
             ++L  LP L+L+ T SAG +++ +   + RGI V N     ++  A+ AV L++ + R
Sbjct: 57  DAEVLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALAR 116

Query: 134 KISSADRFLRQGLWSKIG--DYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNS 191
           +I   DR +R+G WS  G  D  LG  L GK +GI+GLG IG  VA+RL+ FG  VLY  
Sbjct: 117 RIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYD 176

Query: 192 RSKKPVP----YAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVG 247
           RS  P       A Y ++ EL A SD + + C LT +TR +IN E +  +    I+VN  
Sbjct: 177 RSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTA 236

Query: 248 RGAVIDENEMVRCLVRGEIAGAGLDVFENEP-YVPKELLELDN---VVLQPHRAVFTSEC 303
           RG ++DE  ++  L  G+IAGAGLDVFENEP      LL LDN   VVL PH A  T E 
Sbjct: 237 RGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEA 296

Query: 304 FVDLCELAVGNLEALFSNQPLLSPVTAE 331
              + ELA+ NLEA F      + V  E
Sbjct: 297 RKAMAELALENLEAFFDGGVPPNEVNPE 324

Length = 324

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  268 bits (687), Expect = 9e-89
 Identities = 118/314 (37%), Positives = 169/314 (53%), Gaps = 13/314 (4%)

Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQL-LKAYESSLSLEQFLISHAHSIEAILCSGDSPVT 74
           P+VLV +  P         +   F++ +   +  L  E+ L+  A   + +LC+    + 
Sbjct: 1   PKVLVTRRLPE---EALALLREGFEVEVWDEDRPLPREE-LLEAAKGADGLLCTLTDKID 56

Query: 75  LDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRK 134
            ++L   P L+++   S G +HI +   + RGI V N   + +D  AD A  LL+   R+
Sbjct: 57  AELLDAAPPLKVIANYSVGYDHIDVDAAKARGIPVTNTPDVLTDATADLAFALLLAAARR 116

Query: 135 ISSADRFLRQGLWSKIG-DYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRS 193
           +   DRF+R G W        LG+ L GK +GIVG+G IG  VA+R + FG  +LY++RS
Sbjct: 117 VVEGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRAKGFGMKILYHNRS 176

Query: 194 KKPVP----YAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG-IIVNVGR 248
           +KP       A Y ++ EL A SD + + C LT +TR +IN E  LAL K   I++N  R
Sbjct: 177 RKPEAEEELGARYVSLDELLAESDFVSLHCPLTPETRHLINAER-LALMKPTAILINTAR 235

Query: 249 GAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPK-ELLELDNVVLQPHRAVFTSECFVDL 307
           G V+DE+ +V  L  G+IAGAGLDVFE EP      LL L NVVL PH    T E    +
Sbjct: 236 GGVVDEDALVEALKSGKIAGAGLDVFEPEPLPADHPLLTLPNVVLLPHIGSATVETRTAM 295

Query: 308 CELAVGNLEALFSN 321
            ELA  NL A+ + 
Sbjct: 296 AELAADNLLAVLAG 309

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  242 bits (620), Expect = 1e-78
 Identities = 102/271 (37%), Positives = 146/271 (53%), Gaps = 13/271 (4%)

Query: 62  IEAILCSGDS-----PVTLDILRLLPK-LRLVVTASAGVNHIHMPECRRRGIAVANAGSI 115
             AI  +  S     P   +++  LP  L+++  A AG + I +    +RGI V+N    
Sbjct: 49  FVAIYRTFGSAGETGPFDEELISPLPPSLKIIAHAGAGYDQIDVDALTKRGIQVSNTPGA 108

Query: 116 FSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQ 175
             +  AD A+ L++   R  S A+R  R G W    D  L     GK +GI+GLG IG  
Sbjct: 109 VDEATADTALFLILGALRNFSRAERSARAGKWRGFLDLTLAHDPRGKTLGILGLGGIGKA 168

Query: 176 VAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMIN 230
           +A++  AFG  ++Y++RS+ P         +Y ++ EL A SD + + C LT  TR +IN
Sbjct: 169 IARKAAAFGMKIIYHNRSRLPEELEKALATYYVSLDELLAQSDVVSLNCPLTAATRHLIN 228

Query: 231 REVMLALGKEG-IIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDN 289
           ++   A  K+G IIVN  RGAVIDE+ +V  L  G++A AGLDVFENEP V   LL++ N
Sbjct: 229 KK-EFAKMKDGVIIVNTARGAVIDEDALVDALESGKVASAGLDVFENEPEVNPGLLKMPN 287

Query: 290 VVLQPHRAVFTSECFVDLCELAVGNLEALFS 320
           V L PH    T E    + EL + N+EA   
Sbjct: 288 VTLLPHMGTLTVETQEKMEELVLENIEAFLE 318

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  235 bits (602), Expect = 4e-76
 Identities = 110/273 (40%), Positives = 159/273 (58%), Gaps = 6/273 (2%)

Query: 51  LEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVA 110
           L   L +     +A++ S  +PVT ++L   PKL+ +  A AGV++I +   ++RGI V 
Sbjct: 31  LADELEALLADADALIVSSTTPVTAEVLAKAPKLKFIQVAGAGVDNIDLDAAKKRGITVT 90

Query: 111 NAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLG 170
           N     ++  A+ A+GLL+ + R++  AD  +R+G          G +L GK VGIVGLG
Sbjct: 91  NVPGANAEAVAEHALGLLLALLRRLPRADAAVRRGWGWL-WAGFPGYELEGKTVGIVGLG 149

Query: 171 NIGLQVAKRLQAFGCNVLYNSRSKKPVP----YAFYSNVCELAANSDALIICCALTDQTR 226
            IG +VAKRLQAFG  VLY  R++KP P         ++ EL A SD +++   LT +TR
Sbjct: 150 RIGQRVAKRLQAFGMKVLYYDRTRKPEPEEDLGFRVVSLDELLAQSDVVVLHLPLTPETR 209

Query: 227 RMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE-LL 285
            +IN E +  +    ++VN  RG ++DE+ ++R L  G+IAGA LDVFE EP      LL
Sbjct: 210 HLINEEELALMKPGAVLVNTARGGLVDEDALLRALKSGKIAGAALDVFEPEPLPADHPLL 269

Query: 286 ELDNVVLQPHRAVFTSECFVDLCELAVGNLEAL 318
           EL NV+L PH A +T E    + E+AV NLE  
Sbjct: 270 ELPNVILTPHIAGYTEEARERMAEIAVENLERF 302

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  219 bits (560), Expect = 1e-69
 Identities = 96/263 (36%), Positives = 139/263 (52%), Gaps = 10/263 (3%)

Query: 72  PVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDV 131
           PVT ++L   P L+ +  A AGV++I +    +RGI V NA    +   A+  + LL+ +
Sbjct: 55  PVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLAL 114

Query: 132 WRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNS 191
            R+I  AD   R+G W +      G++L GK VGI+GLG IG  VAKRL+AFG  V+   
Sbjct: 115 ARRIPDADASQRRGEWDRKAFR--GTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYD 172

Query: 192 RSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG-IIVN 245
                            ++ EL A +D L +   LT +TR +IN E  LA  K G I++N
Sbjct: 173 PYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAE-ELAKMKPGAILIN 231

Query: 246 VGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP-KELLELDNVVLQPHRAVFTSECF 304
             RG V+DE+ ++  L  G+IAGA LDVFE EP      L +L NV+L PH    T E  
Sbjct: 232 AARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQ 291

Query: 305 VDLCELAVGNLEALFSNQPLLSP 327
             + E+   N+    +  P+++ 
Sbjct: 292 ERVAEIVAENIVRYLAGGPVVNN 314

Length = 324

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  218 bits (558), Expect = 2e-69
 Identities = 97/269 (36%), Positives = 142/269 (52%), Gaps = 9/269 (3%)

Query: 63  EAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAAD 122
           + ++      +  ++L   P+LRL+     G++ + +     RGI VAN     ++  A+
Sbjct: 45  DVLVPGMRKVIDAELLAAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVAE 104

Query: 123 AAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQA 182
            AV L++ + R++  ADR LR G W +  +     +L GK VGIVGLGNIG  VA+RL+ 
Sbjct: 105 HAVMLMLALLRRLPEADRELRAGRWGRP-EGRPSRELSGKTVGIVGLGNIGRAVARRLRG 163

Query: 183 FGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLAL 237
           FG  V+Y  R + P          Y  + EL A SD + +   LT +TR +I  E  LA 
Sbjct: 164 FGVEVIYYDRFRDPEAEEKDLGVRYVELDELLAESDVVSLHVPLTPETRHLIGAE-ELAA 222

Query: 238 GKEG-IIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPK-ELLELDNVVLQPH 295
            K G I++N  RG ++DE  ++  L  G +AGAGLDVF  EP  P   LL LDNV+L PH
Sbjct: 223 MKPGAILINTARGGLVDEEALLAALRSGHLAGAGLDVFWQEPLPPDDPLLRLDNVILTPH 282

Query: 296 RAVFTSECFVDLCELAVGNLEALFSNQPL 324
            A  T E +  +  +   N+  L   +P 
Sbjct: 283 IAGVTDESYQRMAAIVAENIARLLRGEPP 311

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  216 bits (553), Expect = 1e-68
 Identities = 86/281 (30%), Positives = 145/281 (51%), Gaps = 6/281 (2%)

Query: 55  LISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGS 114
           L+      +A++    +PV  +I+     L+++    AG ++I +   + +GI V N  +
Sbjct: 37  LLERIADYDALITPLSTPVDKEIIDAAKNLKIIANYGAGFDNIDVDYAKEKGIPVTNTPA 96

Query: 115 IFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGD-YPLGSKLGGKRVGIVGLGNIG 173
           + ++  A+   GL++ + R+I+  DR +R+G +      + LG +L GK +GI+G+G IG
Sbjct: 97  VSTEPTAELTFGLILALARRIAEGDRLMRRGGFLGWAPLFFLGHELAGKTLGIIGMGRIG 156

Query: 174 LQVAKRLQAFGCNVLYNSRSKKPVPY-----AFYSNVCELAANSDALIICCALTDQTRRM 228
             VA+R +AFG  +LY +R +          A Y ++ EL   SD + +    T +T  +
Sbjct: 157 QAVARRAKAFGMKILYYNRHRLSEETEKELGATYVDLDELLKESDFVSLHAPYTPETHHL 216

Query: 229 INREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELD 288
           I+      +     ++N  RG ++DE  +V  L  GEIAGA LDVFE EP V  EL +LD
Sbjct: 217 IDAAAFKLMKPTAYLINAARGPLVDEKALVDALKTGEIAGAALDVFEFEPEVSPELKKLD 276

Query: 289 NVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPVT 329
           NV+L PH    T E    + + A  N+ +    +   + V 
Sbjct: 277 NVILTPHIGNATVEARDAMAKEAADNIISFLEGKRPKNIVN 317

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  215 bits (550), Expect = 3e-68
 Identities = 106/315 (33%), Positives = 158/315 (50%), Gaps = 30/315 (9%)

Query: 17  RVLVIKPPPPLTLFGDKFISRSFQLLKA---------YESSLSLEQFLISHAHSIEAILC 67
           +VLV         F  K+   + +LL+A             L+ E+ LI      + ++ 
Sbjct: 1   KVLVTPRS-----FS-KYSEEAKELLEAAGFEVVLNPLGRPLTEEE-LIELLKDADGVIA 53

Query: 68  SGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGL 127
            G  P+T ++L   P+L+++     G ++I +   ++RGI V N     S+  A+  +GL
Sbjct: 54  -GLDPITEEVLAAAPRLKVISRYGVGYDNIDLEAAKKRGIVVTNTPGANSNSVAELTIGL 112

Query: 128 LIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNV 187
           ++ + R+I  ADR +R G W +    P+G++L GK +GI+GLG IG  VA+RL  FG  V
Sbjct: 113 MLALARQIPQADREVRAGGWDR----PVGTELYGKTLGIIGLGRIGKAVARRLSGFGMKV 168

Query: 188 LYNSRSKKPVPYAFYSNVC-----ELAANSDALIICCALTDQTRRMINREVMLALGKEG- 241
           L          +A    V      EL   SD + +   LT +TR +IN    LAL K G 
Sbjct: 169 LAYDPYPDEE-FAKEHGVEFVSLEELLKESDFISLHLPLTPETRHLINAAE-LALMKPGA 226

Query: 242 IIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPY-VPKELLELDNVVLQPHRAVFT 300
           I++N  RG ++DE  +   L  G IAGA LDVFE EP      LLEL NV+L PH    T
Sbjct: 227 ILINTARGGLVDEEALYEALKSGRIAGAALDVFEEEPPPADSPLLELPNVILTPHIGAST 286

Query: 301 SECFVDLCELAVGNL 315
            E  + +  +A  N+
Sbjct: 287 KEAVLRMGTMAAQNV 301

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  203 bits (520), Expect = 1e-63
 Identities = 97/279 (34%), Positives = 142/279 (50%), Gaps = 15/279 (5%)

Query: 55  LISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGS 114
           LI  A   +A+L    +PVT +++  LP+L+++V    GV+++ +     RGI V N   
Sbjct: 38  LIEAAADADALLV-QYAPVTAEVIEALPRLKVIVRYGVGVDNVDVAAATERGIPVCNVPD 96

Query: 115 IFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSK---LGGKRVGIVGLGN 171
             +++ AD A+ L++ + RK+   DR +R G W    D+ +G     L G  +G+VG G 
Sbjct: 97  YCTEEVADHALALILALARKLPFLDRAVRAGGW----DWTVGGPIRRLRGLTLGLVGFGR 152

Query: 172 IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVC----ELAANSDALIICCALTDQTRR 227
           IG  VAKR +AFG  V+           A          EL A SD + + C LT +TR 
Sbjct: 153 IGRAVAKRAKAFGFRVIAYDPYVPDGVAALGGVRVVSLDELLARSDVVSLHCPLTPETRH 212

Query: 228 MINREVMLALGKEG-IIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPK-ELL 285
           +I+ E  LAL K G  +VN  RG ++DE  + R L  G IAGA LDV E EP      LL
Sbjct: 213 LIDAE-ALALMKPGAFLVNTARGGLVDEAALARALKSGRIAGAALDVLEEEPPPADSPLL 271

Query: 286 ELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPL 324
              NV+L PH A ++ E   +L   A   +  +   +P 
Sbjct: 272 SAPNVILTPHAAWYSEESLAELRRKAAEEVVRVLRGEPP 310

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  194 bits (497), Expect = 5e-62
 Identities = 77/177 (43%), Positives = 102/177 (57%), Gaps = 6/177 (3%)

Query: 125 VGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFG 184
           + LL+ + R+I  ADR +R G W    D  LG +L GK VGI+GLG IG  VA+RL+AFG
Sbjct: 1   LALLLALARRIPEADRQVRAGRWRP--DALLGRELSGKTVGIIGLGRIGRAVARRLKAFG 58

Query: 185 CNVLYNSRSKKPVPYAFYSNVC---ELAANSDALIICCALTDQTRRMINREVMLALGKEG 241
             V+   R  K    A  +      EL A SD + +   LT +TR +IN E +  +    
Sbjct: 59  MKVIAYDRYPKAEAEALGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPGA 118

Query: 242 IIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP-KELLELDNVVLQPHRA 297
           I++N  RG ++DE+ ++  L  G IAGA LDVFE EP  P   LLEL NV+L PH A
Sbjct: 119 ILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDHPLLELPNVILTPHIA 175

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  195 bits (499), Expect = 2e-60
 Identities = 98/255 (38%), Positives = 143/255 (56%), Gaps = 12/255 (4%)

Query: 76  DILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDA-ADAAVGLLIDVWRK 134
           +++     L+++  A  GV+H+ +  C+ RGI V+NA   +S +A A+  +GL ID+ R 
Sbjct: 62  EVIEACKNLKMISVAFTGVDHVDLEACKERGITVSNAAG-YSTEAVAELTIGLAIDLLRN 120

Query: 135 ISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK 194
           I   D  +R G         +G +L GK VGIVG G IGL+VA+  +AFGC VL  SRS+
Sbjct: 121 IVPCDAAVRAG---GTKAGLIGRELAGKTVGIVGTGAIGLRVARLFKAFGCKVLAYSRSE 177

Query: 195 KP---VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG-IIVNVGRGA 250
           K         Y ++ EL A SD + +   L D+T+ +I +E  LAL KE  I++N  RG 
Sbjct: 178 KEEAKALGIEYVSLDELLAESDIVSLHLPLNDETKGLIGKE-KLALMKESAILINTARGP 236

Query: 251 VIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTSECFVDLC 308
           V+D   +   L  G+IAGAG+DVF+ EP +P +  LL   N +L PH A  T E      
Sbjct: 237 VVDNEALADALNEGKIAGAGIDVFDMEPPLPADYPLLHAPNTILTPHVAFATEEAMEKRA 296

Query: 309 ELAVGNLEALFSNQP 323
           E+   N+EA  + +P
Sbjct: 297 EIVFDNIEAWLAGKP 311

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  195 bits (498), Expect = 2e-60
 Identities = 106/311 (34%), Positives = 159/311 (51%), Gaps = 12/311 (3%)

Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTL 75
           P+V + +  P     G + +   F++    +      + L+     ++A++      +  
Sbjct: 3   PKVFITREIPEN---GIEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDC 59

Query: 76  DILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKI 135
           ++    P+LR+V   + G ++I + E  RRGI V N   + ++  AD A  LL+   R++
Sbjct: 60  EVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRL 119

Query: 136 SSADRFLRQGLWSK--IGDYP---LGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYN 190
             AD F+R G W +  +  +P   LG  + GK +GI+G G IG  VA+R + FG  +LY 
Sbjct: 120 VEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYY 179

Query: 191 SRSKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNV 246
           SR++KP       A Y  + EL   SD + +   LT +T  MIN E +  +    I+VN 
Sbjct: 180 SRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNT 239

Query: 247 GRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVD 306
            RG V+D   +V+ L  G IAGAGLDVFE EPY  +EL  L NVVL PH    T E    
Sbjct: 240 ARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAREG 299

Query: 307 LCELAVGNLEA 317
           + EL   NL A
Sbjct: 300 MAELVAENLIA 310

Length = 333

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  193 bits (494), Expect = 7e-60
 Identities = 92/264 (34%), Positives = 128/264 (48%), Gaps = 11/264 (4%)

Query: 65  ILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAA 124
           IL +  +PVT  ++   PKL+L+     G  ++ +     RGI V N     ++  A+  
Sbjct: 49  ILITHFAPVTKKVIEAAPKLKLIGVCRGGPENVDVEAATERGIPVLNTPGRNAEAVAEFT 108

Query: 125 VGLLIDVWRKISSADRFLRQGLW--SKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQA 182
           VGL++   R I+ A   L+ G W          G +L GK VGIVG G IG +VAKRL+A
Sbjct: 109 VGLMLAETRNIARAHAALKDGEWRKDYYNYDGYGPELRGKTVGIVGFGAIGRRVAKRLKA 168

Query: 183 FGCNVL----YNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALG 238
           FG  VL    Y    K         ++ EL   SD + +   LT +TR MI  E   AL 
Sbjct: 169 FGAEVLVYDPYVDPEKIEADGVKKVSLEELLKRSDVVSLHARLTPETRGMIGAE-EFALM 227

Query: 239 KEG-IIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPK--ELLELDNVVLQPH 295
           K     +N  R  ++DE+ ++  L  G+I GA LDVF  EP +P    LL+LDNV L PH
Sbjct: 228 KPTAYFINTARAGLVDEDALIEALEEGKIGGAALDVFPEEP-LPADHPLLKLDNVTLTPH 286

Query: 296 RAVFTSECFVDLCELAVGNLEALF 319
            A  T +      E+    L+   
Sbjct: 287 IAGATRDVAERSPEIIAEELKRYL 310

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  191 bits (488), Expect = 7e-59
 Identities = 90/273 (32%), Positives = 144/273 (52%), Gaps = 14/273 (5%)

Query: 63  EAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAAD 122
           + +L +   P   ++L   P+LR + + SAGV+ +  PE   R + + NA  IF    A+
Sbjct: 42  DVLLGNPPLP---ELLPAAPRLRWIQSTSAGVDALLFPELLERDVVLTNARGIFGPPIAE 98

Query: 123 AAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQA 182
             +G ++   RK+    R   +  W + G       L GK V IVGLG+IG ++A+R +A
Sbjct: 99  YVLGYMLAFARKLPRYARNQAERRWQRRGPVRE---LAGKTVLIVGLGDIGREIARRAKA 155

Query: 183 FGCNVLYNSRSKKPVPYAF-----YSNVCELAANSDALIICCALTDQTRRMINREVMLAL 237
           FG  V+   RS +P P           + EL   +D ++    LT +TR + N E   A+
Sbjct: 156 FGMRVIGVRRSGRPAPPVVDEVYTPDELDELLPEADYVVNALPLTPETRGLFNAERFAAM 215

Query: 238 GKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPH 295
               +++NVGRG+V+DE+ ++  L  G IAGA LDVFE EP +P +  L +L NV++ PH
Sbjct: 216 KPGAVLINVGRGSVVDEDALIEALESGRIAGAALDVFEEEP-LPADSPLWDLPNVIITPH 274

Query: 296 RAVFTSECFVDLCELAVGNLEALFSNQPLLSPV 328
            +  +      + E+ + NL    + +PLL+ V
Sbjct: 275 ISGDSPSYPERVVEIFLENLRRYLAGEPLLNVV 307

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  190 bits (486), Expect = 1e-58
 Identities = 90/237 (37%), Positives = 127/237 (53%), Gaps = 9/237 (3%)

Query: 73  VTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVW 132
           VT +++   P+L+++  A  GV++I +     RGI V NA    +   A+  + L++ + 
Sbjct: 52  VTAEVIEAAPRLKVIGRAGVGVDNIDVEAATARGILVVNAPGANTISVAEHTIALMLALA 111

Query: 133 RKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL---- 188
           R I  AD  LR G W     +  G +L GK +GIVGLG IG +VA+R +AFG  VL    
Sbjct: 112 RNIPQADASLRAGKW-DRKKFM-GVELRGKTLGIVGLGRIGREVARRARAFGMKVLAYDP 169

Query: 189 YNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG-IIVNVG 247
           Y S  +         ++ EL A +D + +   LT +TR +IN E  LA  K G I++N  
Sbjct: 170 YISAERAAAGGVELVSLDELLAEADFISLHTPLTPETRGLINAEE-LAKMKPGAILINTA 228

Query: 248 RGAVIDENEMVRCLVRGEIAGAGLDVFENEP-YVPKELLELDNVVLQPHRAVFTSEC 303
           RG ++DE  +   L  G+IAGA LDVFE EP      LL L NV+L PH    T E 
Sbjct: 229 RGGIVDEAALADALKSGKIAGAALDVFEQEPPPADSPLLGLPNVILTPHLGASTEEA 285

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  189 bits (483), Expect = 3e-58
 Identities = 85/282 (30%), Positives = 122/282 (43%), Gaps = 10/282 (3%)

Query: 55  LISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGS 114
           L+  A   +A++    +PVT ++L   P L+++     GV++I +     RGI V N   
Sbjct: 32  LLEAAKDADALIVRSTTPVTAEVLEAAPGLKVIARRGVGVDNIDLDAATERGILVTNVPG 91

Query: 115 IFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGL 174
             ++  A+  VGL++ + R+I  AD  +R G W K G  P+G +L GK +G++G G IG 
Sbjct: 92  YSTESVAELTVGLILALARRIPEADASVRAGDWKKGG--PIGLELYGKTLGVIGGGGIGG 149

Query: 175 QVAKRLQAFGCNVLY-----NSRSKKPVPYAFYSNVCEL--AANSDALIICCALTDQTRR 227
             A   +A G  V+      N    +            L     SD LI     T     
Sbjct: 150 IGAAIAKALGMGVVAYDPYPNPERAEEGGVEVLLLDLLLLDLKESDDLINLAPPTTMKTG 209

Query: 228 -MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLE 286
            +I  E    L     I N   G VI+E  +   L  G  A A   V E  P V   LL+
Sbjct: 210 HIIINEARGMLKDAVAINNARGGGVIEEAALDALLEEGIAAAALDVVEEEPPPVNSPLLD 269

Query: 287 LDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPV 328
           L NV+L PH A  T E   ++ E A  NL A        + V
Sbjct: 270 LPNVILTPHIAGATEEAQENMAEEAAENLLAFLKGGTPPNAV 311

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  188 bits (479), Expect = 1e-57
 Identities = 92/281 (32%), Positives = 142/281 (50%), Gaps = 24/281 (8%)

Query: 61  SIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHI---HMPECRRRGIAVAN-AGSIF 116
             + ++    +    + L  L +L+L+   SAGV+H+    +PE    G+ VAN  G   
Sbjct: 40  DADVLVGGRLTKE--EALAALKRLKLIQVPSAGVDHLPLERLPE----GVVVANNHG--N 91

Query: 117 SDDAADAAVGLLIDVWRKISSADRFLRQGLWSKI-GDYPLGSKLGGKRVGIVGLGNIGLQ 175
           S   A+ A+ L++ + ++I   D  LR+G+W    G+ P   +L GK VGI+G G+IG +
Sbjct: 92  SPAVAEHALALILALAKRIVEYDNDLRRGIWHGRAGEEPESKELRGKTVGILGYGHIGRE 151

Query: 176 VAKRLQAFGCNVLYNSRSKKPVPYA----FYSNVCELAANSDALIICCALTDQTRRMINR 231
           +A+ L+AFG  V+  SRS K    A      S++ E    +D +++   LT QTR +I  
Sbjct: 152 IARLLKAFGMRVIGVSRSPKEDEGADFVGTLSDLDEALEQADVVVVALPLTKQTRGLIGA 211

Query: 232 EVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEP-------YVPKEL 284
             + A+    I+VNVGRG V+DE  +   L    IAGA +DV+   P             
Sbjct: 212 AELAAMKPGAILVNVGRGPVVDEEALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPF 271

Query: 285 LELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLL 325
            EL NV++ PH A +T E F    + A  N+      +PLL
Sbjct: 272 HELPNVIMSPHNAGWTEETFRRRIDEAAENIRRYLRGEPLL 312

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  185 bits (471), Expect = 2e-56
 Identities = 87/246 (35%), Positives = 136/246 (55%), Gaps = 8/246 (3%)

Query: 55  LISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGS 114
           L+      + ++    + VT +++     L+++  A  G+++I +   +++GI V N   
Sbjct: 35  LLEKIKDYDVLIVRSRTKVTKEVIDAAKNLKIIARAGVGLDNIDVEYAKKKGIKVINTPG 94

Query: 115 IFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGL 174
             S+  A+  +GL++ + R I  A+R ++ G W+K   Y  G +L GK +GI+G G IG 
Sbjct: 95  ASSNSVAELVIGLMLSLARFIHRANREMKLGKWNK-KKY-KGIELRGKTLGIIGFGRIGR 152

Query: 175 QVAKRLQAFGCNVLYNSRSKKPVP----YAFYSNVCELAANSDALIICCALTDQTRRMIN 230
           +VAK  +A G NV+      K            ++ EL  NSD + +   LT +T+ MIN
Sbjct: 153 EVAKIARALGMNVIAYDPYPKDEQAVELGVKTVSLEELLKNSDFISLHVPLTPETKHMIN 212

Query: 231 REVMLALGKEG-IIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDN 289
           ++  L L K+G II+N  RG VIDE  ++  L  G++AGA LDVFENEP    +LLEL N
Sbjct: 213 KK-ELELMKDGAIIINTSRGGVIDEEALLEALKSGKLAGAALDVFENEPPPGSKLLELPN 271

Query: 290 VVLQPH 295
           V L PH
Sbjct: 272 VSLTPH 277

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  176 bits (450), Expect = 3e-53
 Identities = 89/256 (34%), Positives = 134/256 (52%), Gaps = 14/256 (5%)

Query: 72  PVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDV 131
            +  ++L  LP L+L+   + G N++ +   + RGI V N     +D  A     LL+ +
Sbjct: 54  VLDAEVLAQLPNLKLIGVLATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLAL 113

Query: 132 WRKISSADRFLRQGLWSKIG-----DYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN 186
            R ++  +  ++ G W K       DYP+   L GK +GI+G GNIG  VA+  +AFG  
Sbjct: 114 ARLVAYHNDVVKAGEWQKSPDFCFWDYPIIE-LAGKTLGIIGYGNIGQAVARIARAFGMK 172

Query: 187 VLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG-IIVN 245
           VL+  R   P     Y ++ EL A SD + + C LT +TR +IN E  LA  K G I++N
Sbjct: 173 VLFAERKGAPPLREGYVSLDELLAQSDVISLHCPLTPETRNLINAEE-LAKMKPGAILIN 231

Query: 246 VGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE----LLELDNVVLQPHRAVFTS 301
             RG ++DE  +   L  G+IAGAGLDV   EP  P+     L    N+++ PH A  + 
Sbjct: 232 TARGGLVDEQALADALNSGKIAGAGLDVLSQEP--PRADNPLLKAAPNLIITPHIAWASR 289

Query: 302 ECFVDLCELAVGNLEA 317
           E    L ++ V N++A
Sbjct: 290 EARQRLMDILVDNIKA 305

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  182 bits (464), Expect = 3e-53
 Identities = 89/237 (37%), Positives = 127/237 (53%), Gaps = 24/237 (10%)

Query: 72  PVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANA--GSIFSDDAADAAVGLLI 129
            VT ++L     L+++  A  GV+++ +P   RRGI V NA  G+  S  AA+  + L++
Sbjct: 53  KVTAEVLEAAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTIS--AAEHTIALML 110

Query: 130 DVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL- 188
            + R I  A   L+ G W +   + +G +L GK +GI+GLG IG +VAKR +AFG  V+ 
Sbjct: 111 ALARNIPQAHASLKAGKWER-KKF-MGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIA 168

Query: 189 ---YNSRSK------KPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGK 239
              Y S  +      + V         EL A +D + +   LT +TR +I  E  LA  K
Sbjct: 169 YDPYISPERAAQLGVELVSLD------ELLARADFITLHTPLTPETRGLIGAEE-LAKMK 221

Query: 240 EG-IIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPH 295
            G  I+N  RG +IDE  +   L  G++AGA LDVFE EP     L EL NVV+ PH
Sbjct: 222 PGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPH 278

Length = 526

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  175 bits (447), Expect = 9e-51
 Identities = 101/296 (34%), Positives = 155/296 (52%), Gaps = 22/296 (7%)

Query: 17  RVLVIKP--PPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVT 74
           +VL+  P  P  + +  D  +          ++ LS E+ L+      +A++    + VT
Sbjct: 1   KVLIADPISPDGIDILEDVGVEVD------VQTGLSREE-LLEIIPDYDALIVRSATKVT 53

Query: 75  LDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANA--GSIFSDDAADAAVGLLIDVW 132
            +++   PKL+++  A  GV++I +     RGI V NA  G+  S  AA+ A+ +L+   
Sbjct: 54  EEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTIS--AAEHALAMLLAAA 111

Query: 133 RKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL---- 188
           R I  AD  L++G W +   + +G++L GK +G++GLG IG  VAKR +AFG  VL    
Sbjct: 112 RNIPQADASLKEGEWDR-KAF-MGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDP 169

Query: 189 YNSRSK-KPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG-IIVNV 246
           Y S  + + +      ++ EL A +D + +   LT +TR +I  E  LA  K+G IIVN 
Sbjct: 170 YISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAE-ELAKMKKGVIIVNC 228

Query: 247 GRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSE 302
            RG +IDE  +   L  G +  A LDVFE EP     L +LDNV+  PH    T E
Sbjct: 229 ARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTRE 284

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  165 bits (420), Expect = 9e-49
 Identities = 84/256 (32%), Positives = 132/256 (51%), Gaps = 8/256 (3%)

Query: 81  LPKLRLVVTASAGVNHIHMPECRRRGIAVAN-AGSIFSDDAADAAVGLLIDVWRKISSAD 139
              L+L+     G +++ +      G+ V    G++  D  A+ AV L++ V RKI+ A 
Sbjct: 67  NDGLKLIARHGIGYDNVDLKAATEHGVIVTRVPGAVERDAVAEHAVALILTVLRKINQAS 126

Query: 140 RFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRL-QAFGCNVL----YNSRSK 194
             +++G W++  ++ +G +L GK VGI+G GNIG +VA+ L + F   VL    Y S   
Sbjct: 127 EAVKEGKWTERANF-VGHELSGKTVGIIGYGNIGSRVAEILKEGFNAKVLAYDPYVSEEV 185

Query: 195 KPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDE 254
                A   ++ EL A SD + +   LT++T  MIN +    + K  I+VN  RG +IDE
Sbjct: 186 IKKKGAKPVSLEELLAESDIISLHAPLTEETYHMINEKAFSKMKKGVILVNTARGELIDE 245

Query: 255 NEMVRCLVRGEIAGAGLDVFENEPYVPKE-LLELDNVVLQPHRAVFTSECFVDLCELAVG 313
             ++  L  G+IAGAGLDV E EP      LL  +NVV+ PH   +T E    + E  V 
Sbjct: 246 EALIEALKSGKIAGAGLDVLEEEPIKADHPLLHYENVVITPHIGAYTYESLYGMGEKVVD 305

Query: 314 NLEALFSNQPLLSPVT 329
           ++E   + +     + 
Sbjct: 306 DIEDFLAGKEPKGILN 321

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  165 bits (419), Expect = 2e-48
 Identities = 88/286 (30%), Positives = 130/286 (45%), Gaps = 21/286 (7%)

Query: 59  AHSIEAILCSGDSP-VTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFS 117
              +E ++    +P +  ++L   P+LR VV A+  V  +       RGI V +A    +
Sbjct: 47  LAGVEVLVTGWGTPPLDAELLARAPRLRAVVHAAGSVRGLVTDAVWERGILVTSAADANA 106

Query: 118 DDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVA 177
           +  A+  +  ++   R+I       R G          G  L G+ VGIVG G IG  V 
Sbjct: 107 EPVAEFTLAAILLALRRIPRFAAAYRAGRDWGWPTRRGGRGLYGRTVGIVGFGRIGRAVV 166

Query: 178 KRLQAFGCNVLYNSRSKKPVPYAFYSNVC----------ELAANSDALIICCALTDQTRR 227
           + L+ FG  VL         PY   +             EL A SD + +   LT +TR 
Sbjct: 167 ELLRPFGLRVLVYD------PYLPAAEAAALGVELVSLDELLARSDVVSLHAPLTPETRG 220

Query: 228 MINREVMLALGKEG-IIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP-KELL 285
           MI+   +LAL ++G   +N  RGA++DE  ++  L  G +  A LDV + EP  P   L 
Sbjct: 221 MIDAR-LLALMRDGATFINTARGALVDEAALLAELRSGRL-RAALDVTDPEPLPPDSPLR 278

Query: 286 ELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPVTAE 331
            L NV+L PH A  T +    L + A+  LE   + +PLL  VT E
Sbjct: 279 TLPNVLLTPHIAGSTGDERRRLGDYALDELERFLAGEPLLHEVTPE 324

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  162 bits (413), Expect = 8e-48
 Identities = 85/253 (33%), Positives = 120/253 (47%), Gaps = 13/253 (5%)

Query: 72  PVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDA-ADAAVGLLID 130
           P    +L  LP L+L+VT       I +   + RGI V   G      A A+    L++ 
Sbjct: 58  PFPAALLERLPNLKLLVTTGMRNASIDLAAAKERGIVVCGTGG--GPTATAELTWALILA 115

Query: 131 VWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYN 190
           + R +   D  LR G W       LG+ L GK +GIVGLG IG +VA+  QAFG  V+  
Sbjct: 116 LARNLPEEDAALRAGGWQTT----LGTGLAGKTLGIVGLGRIGARVARIGQAFGMRVIAW 171

Query: 191 SRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVN 245
           S +               +  EL A SD + +   L+D+TR ++  E +  +    ++VN
Sbjct: 172 SSNLTAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTALLVN 231

Query: 246 VGRGAVIDENEMVRCLVRGEIAGAGLDVFENEP-YVPKELLELDNVVLQPHRAVFTSECF 304
             RG ++DE  ++  L  G IAGA LDVF+ EP      L  L NV+L PH    T E +
Sbjct: 232 TSRGPLVDEGALLAALRAGRIAGAALDVFDVEPLPADHPLRGLPNVLLTPHIGYVTEEAY 291

Query: 305 VDLCELAVGNLEA 317
                 AV N+ A
Sbjct: 292 EGFYGQAVENIAA 304

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  160 bits (408), Expect = 5e-47
 Identities = 79/265 (29%), Positives = 126/265 (47%), Gaps = 15/265 (5%)

Query: 45  YESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRR 104
            +  LS E+ L+      + ++      +  D L   P+L+++  A  G ++  +  C  
Sbjct: 29  TDEPLSREE-LLRRCKDADGLMAFMPDRIDADFLDACPRLKIIACALKGYDNFDVEACTA 87

Query: 105 RGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRV 164
           RGI V     + ++  A+  +GLLI + R I + DRF+R G +        G+ L GK V
Sbjct: 88  RGIWVTIVPDLLTEPTAELTIGLLIGLGRHILAGDRFVRSGKFGGWRPKFYGTGLDGKTV 147

Query: 165 GIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVC-----ELAANSDALIICC 219
           GI+G+G +G  +A+RL  FG  +LY              N+      EL  +SD L++  
Sbjct: 148 GILGMGALGRAIARRLSGFGATLLYYDPHPLDQAEEQALNLRRVELDELLESSDFLVLAL 207

Query: 220 ALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPY 279
            LT  T  +IN E +  +    ++VN  RG+V+DE  +   L  G + G   DVFE E +
Sbjct: 208 PLTPDTLHLINAEALAKMKPGALLVNPCRGSVVDEAAVAEALKSGHLGGYAADVFEMEDW 267

Query: 280 --------VPKELLEL-DNVVLQPH 295
                   +P+ELL+  D  V  PH
Sbjct: 268 ARPDRPRSIPQELLDQHDRTVFTPH 292

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  159 bits (404), Expect = 2e-46
 Identities = 80/303 (26%), Positives = 142/303 (46%), Gaps = 23/303 (7%)

Query: 32  DKFISRSFQL-LKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTA 90
           +K I ++  + ++     L+ ++     A   +AIL +    +  ++L   P L+ +   
Sbjct: 16  EKEILKAGGVDVEIVTYLLNDDETAE-LAKGADAILTAFTDKIDAELLDKAPGLKFISLR 74

Query: 91  SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKI 150
           + G ++I +   +  GI V N      +  A+  + L++ + R     D   +       
Sbjct: 75  ATGYDNIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILALLRNRKYIDERDKNQDLQD- 133

Query: 151 GDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YN-SRSKKPVPYAF-YSNVCE 207
               +G +L  + VG+VG G IG  VA+R + FG  V+ Y+  R+ +       Y ++ E
Sbjct: 134 -AGVIGRELEDQTVGVVGTGKIGRAVAQRAKGFGMKVIAYDPFRNPELEDKGVKYVSLEE 192

Query: 208 LAANSDALIICCALTDQTRRMINREVMLALGKEG-IIVNVGRGAVIDENEMVRCLVRGEI 266
           L  NSD + +   LT +   MIN E    L K+G II+N  RG+++D   ++  L  G+I
Sbjct: 193 LFKNSDIISLHVPLTPENHHMINEE-AFKLMKKGVIIINTARGSLVDTEALIEALDSGKI 251

Query: 267 AGAGLDVFENE-PYVPK-------------ELLELDNVVLQPHRAVFTSECFVDLCELAV 312
            GAGLDV E+E P + K              L    NV++ PH A +T +   ++ E++ 
Sbjct: 252 FGAGLDVLEDETPDLLKDLEGEIFKDALNALLGRRPNVIITPHTAFYTDDALKNMVEISC 311

Query: 313 GNL 315
            N+
Sbjct: 312 ENI 314

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  156 bits (396), Expect = 2e-45
 Identities = 81/276 (29%), Positives = 127/276 (46%), Gaps = 12/276 (4%)

Query: 63  EAILCSGDSPVTLDILRLLPKLRLVVTASAGVNH-IHMPECRRRGIAVANAGSIFSDDAA 121
           +A++ +G S    + L   P +R V    AGV   +        G    NA   +++  A
Sbjct: 30  DALVWTG-SAREPERLPASPGVRWVQLPFAGVEAFVEAGVITDPGRRWTNAAGAYAETVA 88

Query: 122 DAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQ 181
           + A+ LL+   R++       R   W    +  L + L G  V IVG G IG  +   L 
Sbjct: 89  EHALALLLAGLRQLP---ARARATTWDPAEEDDLVTLLRGSTVAIVGAGGIGRALIPLLA 145

Query: 182 AFGCNVLYNSRSKKPVPYAFY----SNVCELAANSDALIICCALTDQTRRMINREVMLAL 237
            FG  V+  +RS +PV  A        + E+  ++D +++   LT +TR +++   + A+
Sbjct: 146 PFGAKVIAVNRSGRPVEGADETVPADRLDEVWPDADHVVLAAPLTPETRHLVDAAALAAM 205

Query: 238 GKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPH 295
                +VNV RG ++D + +V  L  GEIAGA LDV + EP +P    L  L N ++ PH
Sbjct: 206 KPHAWLVNVARGPLVDTDALVDALRSGEIAGAALDVTDPEP-LPDGHPLWSLPNALITPH 264

Query: 296 RAVFTSECFVDLCELAVGNLEALFSNQPLLSPVTAE 331
            A         L E    N+ A  + +PLL  V  E
Sbjct: 265 VANTPEVIRPLLAERVAENVRAFAAGEPLLGVVDPE 300

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score =  154 bits (392), Expect = 1e-44
 Identities = 80/272 (29%), Positives = 142/272 (52%), Gaps = 13/272 (4%)

Query: 61  SIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDA 120
            IE IL   +       L  +  L+ +   SAGV+++ +   +++GI + N   I S   
Sbjct: 39  DIE-ILYGYNPDFDELDLAKMKNLKWIQLYSAGVDYLPLEYIKKKGILLTNNSGIHSIPI 97

Query: 121 ADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRL 180
           A+  VG ++++++ +  A +  ++  W    D  L  +L GK +  +G G+IG ++AKRL
Sbjct: 98  AEWIVGYILEIYKGLKKAYKNQKEKKWK--MDSSL-LELYGKTILFLGTGSIGQEIAKRL 154

Query: 181 QAFGCNVLYNSRSKKPVPYAF---YS--NVCELAANSDALIICCALTDQTRRMINREVML 235
           +AFG  V+  + S + V Y F   Y    + E+   +D ++    LT++T  + +     
Sbjct: 155 KAFGMKVIGVNTSGRDVEY-FDKCYPLEELDEVLKEADIVVNVLPLTEETHHLFDEAFFE 213

Query: 236 ALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQ 293
            + K  + +NVGRG  +DE+ ++  L   +I GA LDVFE EP +PK+  L +LDNV++ 
Sbjct: 214 QMKKGALFINVGRGPSVDEDALIEALKNKQIRGAALDVFEEEP-LPKDSPLWDLDNVLIT 272

Query: 294 PHRAVFTSECFVDLCELAVGNLEALFSNQPLL 325
           PH +  +      L ++   NL++   +  LL
Sbjct: 273 PHISGVSEHFNERLFDIFYENLKSFLEDGELL 304

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score =  153 bits (389), Expect = 4e-44
 Identities = 94/278 (33%), Positives = 139/278 (50%), Gaps = 27/278 (9%)

Query: 71  SPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLID 130
           S +  ++L  LP+L+L+ T S G +HI +  CR RGIAV N         A+ A  LL+ 
Sbjct: 51  SRLDAEVLEKLPRLKLIATRSTGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLA 110

Query: 131 VWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-Y 189
           + RK+  A    R+G +S+ G    G +L GK +G+VG G IG +VA+  + FG  VL Y
Sbjct: 111 LSRKLREAIERTRRGDFSQAGL--RGFELAGKTLGVVGTGRIGRRVARIARGFGMKVLAY 168

Query: 190 NSRSKK--PVPYAF-YSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNV 246
           +    +       F Y ++ EL   SD + +    T QT  +INRE    +    +++N 
Sbjct: 169 DVVPDEELAERLGFRYVSLEELLQESDIISLHVPYTPQTHHLINRENFALMKPGAVLINT 228

Query: 247 GRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE---------------------LL 285
            RGAV+D   +VR L  G++AGAGLDV E E  + +E                     LL
Sbjct: 229 ARGAVVDTEALVRALKEGKLAGAGLDVLEQEEVLREEAELFREDVSPEDLKKLLADHALL 288

Query: 286 ELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQP 323
              NV++ PH A  T E    + +  V N++A  + QP
Sbjct: 289 RKPNVIITPHVAYNTKEALERILDTTVENIKAFAAGQP 326

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score =  150 bits (380), Expect = 8e-43
 Identities = 87/260 (33%), Positives = 130/260 (50%), Gaps = 8/260 (3%)

Query: 63  EAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAAD 122
           E +L SG+  V   +L  +PKLR   T S G ++  +     R I + +  ++ ++  AD
Sbjct: 47  EGLLGSGEK-VDAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVAD 105

Query: 123 AAVGLLIDVWRKISSADRFLRQGLWSK-IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQ 181
             + L++   R++      ++ G W+  IG    G+ +  K +GIVG+G IG+ +A+R  
Sbjct: 106 TLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAH 165

Query: 182 -AFGCNVLYNSRSKKP-VPYAFYSNVCEL---AANSDALIICCALTDQTRRMINREVMLA 236
             F   +LYN+R         F +  C+L      SD + I   LTD+T  +   E    
Sbjct: 166 FGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAK 225

Query: 237 LGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPY-VPKELLELDNVVLQPH 295
           +    I +N GRG V+DEN ++  L +GEI  AGLDVFE EP  V   LL L NVV  PH
Sbjct: 226 MKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPH 285

Query: 296 RAVFTSECFVDLCELAVGNL 315
               T E   ++   AV NL
Sbjct: 286 IGSATHETRYNMAACAVDNL 305

Length = 323

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  141 bits (358), Expect = 1e-39
 Identities = 82/258 (31%), Positives = 136/258 (52%), Gaps = 13/258 (5%)

Query: 72  PVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDV 131
           P+  + +     L+ +  A AG+ +I +   + +GI + NA     D   + A+G+L+ +
Sbjct: 51  PIDKEFIEKATNLKFIARAGAGLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLAL 110

Query: 132 WRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YN 190
           + K++ AD+ +R G+W + G+   G +L GK VGI+G GN+G   AKRL  FGC V+ Y+
Sbjct: 111 FNKLNRADQEVRNGIWDREGNR--GVELMGKTVGIIGYGNMGKAFAKRLSGFGCKVIAYD 168

Query: 191 SRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGA 250
                   YA   ++  L   +D L +   LT +TR M+N+E + +  K    +N  RG 
Sbjct: 169 KYKNFGDAYAEQVSLETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGK 228

Query: 251 VIDENEMVRCLVRGEIAGAGLDVFENE----------PYVPKELLELDNVVLQPHRAVFT 300
           V+   ++V+ L  G+I GA LDV E E          P   + L++   V+L PH A +T
Sbjct: 229 VVVTKDLVKALKSGKILGACLDVLEYEKASFESIFNQPEAFEYLIKSPKVILTPHIAGWT 288

Query: 301 SECFVDLCELAVGNLEAL 318
            E +  + E+ V  ++AL
Sbjct: 289 FESYEKIAEVLVDKIKAL 306

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score =  141 bits (359), Expect = 1e-39
 Identities = 90/306 (29%), Positives = 142/306 (46%), Gaps = 35/306 (11%)

Query: 42  LKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKL--RLVVTASAGVNHIHM 99
           +   +  L+LE   +  A   + I   G S ++ ++L  L +   + + T S G +HI +
Sbjct: 27  VTLTKEPLTLENAHL--AEGYDGISILGKSKISAELLEKLKEAGVKYISTRSIGYDHIDL 84

Query: 100 PECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLW-SKIGDYPLGSK 158
              +  GI V+N  +   +  AD  V L++   RK           +  +++ DY LG  
Sbjct: 85  DAAKELGIKVSNV-TYSPNSVADYTVMLMLMALRKYKQI-------MKRAEVNDYSLGGL 136

Query: 159 LG----GKRVGIVGLGNIGLQVAKRLQAFGCNVL-YNSRSKKPV-PYAFYSNVCELAANS 212
            G       VG++G G IG  V K L  FGC +L Y+    + V  YA Y ++  L   S
Sbjct: 137 QGRELRNLTVGVIGTGRIGQAVIKNLSGFGCKILAYDPYPNEEVKKYAEYVDLDTLYKES 196

Query: 213 DALIICCALTDQTRRMINREVMLALGKEG-IIVNVGRGAVIDENEMVRCLVRGEIAGAGL 271
           D + +   LT++T  +IN+E + A  K+G II+N  RG +ID   ++  L  G+I GA L
Sbjct: 197 DIITLHTPLTEETYHLINKESI-AKMKDGVIIINTARGELIDTEALIEGLESGKIGGAAL 255

Query: 272 DVFENE-----------PYVPKELLEL---DNVVLQPHRAVFTSECFVDLCELAVGNLEA 317
           DV E E               +EL  L    NV+L PH A +T +   D+ E ++ +L A
Sbjct: 256 DVIEGEDGIYYNDRKGDILSNRELAILRSFPNVILTPHMAFYTDQAVSDMVENSIESLVA 315

Query: 318 LFSNQP 323
                 
Sbjct: 316 FEKGGE 321

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  140 bits (356), Expect = 4e-39
 Identities = 100/316 (31%), Positives = 150/316 (47%), Gaps = 43/316 (13%)

Query: 42  LKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKL--RLVVTASAGVNHIHM 99
           L  +E  L+ E    S A   +A+    +  +   +L  L +L  +L+    AG N++ +
Sbjct: 27  LTYFEERLTEET--ASLAKGFDAVCVFVNDDLDAPVLEKLAELGVKLIALRCAGFNNVDL 84

Query: 100 PECRRRGIAVANAGSIFSDDA-ADAAVGLLIDVWRKISSA-DR-----FLRQGLWSKIGD 152
              +  GI V      +S  A A+ AV LL+ + RKI  A +R     F   GL      
Sbjct: 85  KAAKELGITVVRV-PAYSPYAVAEHAVALLLALNRKIHRAYNRVREGNFSLDGL------ 137

Query: 153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YNS-RSKKPVPYAF-YSNVCELA 209
             LG  L GK VG++G G IG   A+ L+ FGC VL Y+   + +       Y ++ EL 
Sbjct: 138 --LGFDLHGKTVGVIGTGKIGQAFARILKGFGCRVLAYDPYPNPELAKLGVEYVDLDELL 195

Query: 210 ANSDALIIC--CALTDQTRRMINREVMLALGKEG-IIVNVGRGAVIDENEMVRCLVRGEI 266
           A SD  II   C LT +T  +IN E  +A  K+G +++N  RG +ID   ++  L  G+I
Sbjct: 196 AESD--IISLHCPLTPETHHLINAET-IAKMKDGVMLINTSRGGLIDTKALIEALKSGKI 252

Query: 267 AGAGLDVFENE-PY-------------VPKELLELDNVVLQPHRAVFTSECFVDLCELAV 312
            G GLDV+E E                V   LL   NV++  H+A FT E   ++ E  +
Sbjct: 253 GGLGLDVYEEEAGLFFEDHSDEIIQDDVLARLLSFPNVLITGHQAFFTKEALTNIAETTL 312

Query: 313 GNLEALFSNQPLLSPV 328
            NL+   + +PL + V
Sbjct: 313 ENLDDFEAGKPLKNEV 328

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score =  137 bits (348), Expect = 3e-38
 Identities = 82/260 (31%), Positives = 137/260 (52%), Gaps = 18/260 (6%)

Query: 76  DILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKI 135
           ++L  LP L+L+   + G N++ +   +++GIAV N     ++  A     +L+ +  +I
Sbjct: 56  EVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRI 115

Query: 136 SSADRFLRQGLWSK------IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY 189
           +  DR+++ G +S+      I   PLG ++ GK+ GI+GLG IG +VAK  QAFG  V+Y
Sbjct: 116 NYYDRYVKSGEYSESPIFTHISR-PLG-EIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVY 173

Query: 190 NSRSKK--PVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVG 247
            S S K     Y   S + EL   SD + I   L ++T+ +I  + +  L    I++NVG
Sbjct: 174 YSTSGKNKNEEYERVS-LEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVG 232

Query: 248 RGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE--LLEL---DNVVLQPHRAVFTSE 302
           RG +++E ++ + L   +I  AGLDV E EP + K   LL +   + +++ PH A  + E
Sbjct: 233 RGGIVNEKDLAKALDEKDI-YAGLDVLEKEP-MEKNHPLLSIKNKEKLLITPHIAWASKE 290

Query: 303 CFVDLCELAVGNLEALFSNQ 322
               L E    N++      
Sbjct: 291 ARKTLIEKVKENIKDFLEGG 310

Length = 311

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  129 bits (326), Expect = 4e-35
 Identities = 70/253 (27%), Positives = 113/253 (44%), Gaps = 34/253 (13%)

Query: 63  EAILC-SGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAA 121
           +A++  S      L  +   P L+ +  A AGVN+I +    +RGI V N     ++  A
Sbjct: 33  DALIVRSDK----LHDMDFAPSLKAIARAGAGVNNIDVDAASKRGIVVFNTPGANANAVA 88

Query: 122 DAAVGLLI---------DVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNI 172
           +  + +++           W      D   +     K     +G++L GK +G++GLGNI
Sbjct: 89  ELVIAMMLALSRNIIQAIKWVTNGDGDDISKGVEKGK--KQFVGTELRGKTLGVIGLGNI 146

Query: 173 GLQVAKRLQAFGCNVLYNSRS---------KKPVPYAFYSNVCELAANSDALIICCALTD 223
           G  VA    A G  V+                 V     +++ EL A +D + +   LTD
Sbjct: 147 GRLVANAALALGMKVIGYDPYLSVEAAWKLSVEVQRV--TSLEELLATADYITLHVPLTD 204

Query: 224 QTRRMINREVMLALGKEG-IIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPK 282
           +TR +IN E+ LA  K G I++N  RG ++DE  ++  L  G++ G  +  F      P 
Sbjct: 205 ETRGLINAEL-LAKMKPGAILLNFARGEIVDEEALLEALDEGKL-GGYVTDFPE----PA 258

Query: 283 ELLELDNVVLQPH 295
            L  L NV+  PH
Sbjct: 259 LLGHLPNVIATPH 271

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score =  128 bits (323), Expect = 2e-34
 Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 34/246 (13%)

Query: 91  SAGVNHIHMPECRRRGIAVANAGSIFSDDA-ADAAVGLLIDVWRKISSADRFLRQGLWSK 149
           SAGV+ I +   +  G+ + N  + +S  A A+ AV   +++ R     DR + +G +  
Sbjct: 76  SAGVDMIDLDLAKENGLKITNVPA-YSPRAIAEFAVTQALNLLRNTPEIDRRVAKGDFRW 134

Query: 150 IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-----YNSRSKKPVPYAFYSN 204
                +G ++    VGI+G G IG   AK  + FG  V+      N   +K + Y  Y +
Sbjct: 135 APG-LIGREIRDLTVGIIGTGRIGSAAAKIFKGFGAKVIAYDPYPNPELEKFLLY--YDS 191

Query: 205 VCELAANSDALIICCALTDQTRRMINREVMLALGKEG-IIVNVGRGAVIDENEMVRCLVR 263
           + +L   +D + +   LT +   +IN E   A  K+G I+VN  RG ++D   ++  L  
Sbjct: 192 LEDLLKQADIISLHVPLTKENHHLINAE-AFAKMKDGAILVNAARGGLVDTKALIDALDS 250

Query: 264 GEIAGAGLDVFENE-PYVPK-------------ELLELDNVVLQPHRAVFTSECFVDLCE 309
           G+IAGA LD +ENE  Y  K             EL+ + NV++ PH A +T        +
Sbjct: 251 GKIAGAALDTYENETGYFNKDWSGKEIEDEVLKELIAMPNVLITPHIAFYT--------D 302

Query: 310 LAVGNL 315
            AV N+
Sbjct: 303 TAVKNM 308

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  126 bits (320), Expect = 3e-34
 Identities = 78/264 (29%), Positives = 124/264 (46%), Gaps = 19/264 (7%)

Query: 69  GDSPVTLDILRLLPKLRLVVTASAGVNHI--HMPECRRRGIAVANAGSIFSDDAADAAVG 126
             +P  L+ LR LP+LR+V T SAG + +   +PE    G+ + NA  +     A+ AV 
Sbjct: 46  MAAPPVLEALRALPRLRVVQTLSAGYDGVLPLLPE----GVTLCNARGVHDASTAELAVA 101

Query: 127 LLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN 186
           L++   R +    R   +G W    +      L  +RV IVG G+IG  + +RL  F   
Sbjct: 102 LILASLRGLPRFVRAQARGRW----EPRRTPSLADRRVLIVGYGSIGRAIERRLAPFEVR 157

Query: 187 VLYNSRSKKPVP--YAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG-II 243
           V   +R+ +P    +     +  L   +D +++   LTD+TR +++ E  LA   +G ++
Sbjct: 158 VTRVARTARPGEQVHGI-DELPALLPEADVVVLIVPLTDETRGLVDAE-FLARMPDGALL 215

Query: 244 VNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTS 301
           VNV RG V+D + +V  L  G +  A LDV + EP +P    L     V++ PH    T 
Sbjct: 216 VNVARGPVVDTDALVAELASGRLR-AALDVTDPEP-LPPGHPLWSAPGVLITPHVGGATP 273

Query: 302 ECFVDLCELAVGNLEALFSNQPLL 325
                   L    L    + +PL 
Sbjct: 274 AFLPRAYALVRRQLRRYAAGEPLE 297

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  127 bits (320), Expect = 5e-34
 Identities = 82/304 (26%), Positives = 129/304 (42%), Gaps = 47/304 (15%)

Query: 65  ILCSGDSPVTLDILRLLPKLRLVVTASAGVNH-IHMPECRRRGIAVANAGSIFSDDAADA 123
           ILC+            +P LRLV   SAG +H +  P  +   + +  A  I     A+ 
Sbjct: 39  ILCT---FHPHPDAEDVPNLRLVQLFSAGADHWLGHPLYKDPEVPLCTASGIHGPQIAEW 95

Query: 124 AVGLLIDVWRKISSADRFL------RQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVA 177
            +G     W  +  +  FL      ++  W +  +        GKRVGI+G G+IG Q A
Sbjct: 96  VIG----TW--LVLSHHFLQYIELQKEQTWGRRQEAYSVEDSVGKRVGILGYGSIGRQTA 149

Query: 178 KRLQAFGCNVL-YNSRSKKP--------------------VPYAFYSNVCE------LAA 210
           +  QA G  V  Y    +                      +P A++S   +      L  
Sbjct: 150 RLAQALGMEVYAYTRSPRPTPESRKDDGYIVPGTGDPDGSIPSAWFSGTDKASLHEFLRQ 209

Query: 211 NSDALIICCALTDQTRRMINREVMLALGKEG-IIVNVGRGAVIDENEMVRCLVRGEIAGA 269
           + D L++   LT  T+ ++  E    L K    + N+ RG+++D + +V  L  G+I GA
Sbjct: 210 DLDLLVVSLPLTPATKHLLGAEEFEILAKRKTFVSNIARGSLVDTDALVAALESGQIRGA 269

Query: 270 GLDVFENEPYVPK--ELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSP 327
            LDV + EP +P    L    NV++ PH +  T E F    ++   NLE L   +PL++ 
Sbjct: 270 ALDVTDPEP-LPADHPLWSAPNVIITPHVSWQTQEYFDRALDVLEENLERLRKGEPLINL 328

Query: 328 VTAE 331
           V  E
Sbjct: 329 VDRE 332

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score =  123 bits (311), Expect = 1e-32
 Identities = 72/213 (33%), Positives = 104/213 (48%), Gaps = 31/213 (14%)

Query: 83  KLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFL 142
           K++ V TA+ G +HI     + RGI  ANA    ++  A+  +  L              
Sbjct: 57  KVKFVGTATIGTDHIDTDYLKERGIGFANAPGCNANSVAEYVLSAL---------LVLAQ 107

Query: 143 RQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNS--RSKKPVPYA 200
           RQG             L GK VGIVG+GN+G ++A+RL+A G NVL     R++      
Sbjct: 108 RQGF-----------SLKGKTVGIVGVGNVGSRLARRLEALGMNVLLCDPPRAEAEGDPG 156

Query: 201 FYSNVCELAANSDALIICC--ALTDQ----TRRMINREVMLALGKEGIIVNVGRGAVIDE 254
           F S + EL A +D  II     LT      T  +++ + + AL    I++N  RGAVID 
Sbjct: 157 FVS-LEELLAEAD--IITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILINASRGAVIDN 213

Query: 255 NEMVRCLVRGEIAGAGLDVFENEPYVPKELLEL 287
             ++  L RG+     LDV+ENEP +  ELL+ 
Sbjct: 214 QALLALLQRGKDLRVVLDVWENEPEIDLELLDK 246

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  121 bits (305), Expect = 5e-32
 Identities = 75/233 (32%), Positives = 120/233 (51%), Gaps = 15/233 (6%)

Query: 73  VTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSD--DAADAAVGLLID 130
           +T ++L   PKL  +     G N + +    +RGI V NA   FS+    A+  +G +I 
Sbjct: 54  LTEEVLEAAPKLLAIGCFCIGTNQVDLDAAAKRGIPVFNAP--FSNTRSVAELVIGEIIM 111

Query: 131 VWRKISSADRFLRQGLWSKIGDYPLGS-KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL- 188
           + R++   +    +G+W+K      GS ++ GK +GI+G G+IG Q++   +A G  V+ 
Sbjct: 112 LARRLPDRNAAAHRGIWNKSAT---GSHEVRGKTLGIIGYGHIGSQLSVLAEALGMRVIF 168

Query: 189 YNSRSKKPVPYAF-YSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVG 247
           Y+   K P+  A   S++ EL A +D + +    T  T+ MI  E +  + K  I++N  
Sbjct: 169 YDIAEKLPLGNARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINAS 228

Query: 248 RGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE-----LLELDNVVLQPH 295
           RG V+D + +   L  G +AGA +DVF  EP    E     L  L NV+L PH
Sbjct: 229 RGTVVDIDALAEALRSGHLAGAAVDVFPEEPASNGEPFSSPLQGLPNVILTPH 281

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score =  120 bits (304), Expect = 7e-32
 Identities = 73/268 (27%), Positives = 121/268 (45%), Gaps = 24/268 (8%)

Query: 72  PVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDV 131
            +    L   P+L+L++ A+ G N++ +   R RGI V N     +   A   + LL+ +
Sbjct: 55  ALDAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLAL 114

Query: 132 WRKISSADRFLRQGLWSKIG-----DYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN 186
             ++    + +  G W +       D+P+  +L GK +G++G G +G  VA+  +AFG  
Sbjct: 115 ATRLPDYQQAVAAGRWQQSSQFCLLDFPI-VELEGKTLGLLGHGELGGAVARLAEAFGMR 173

Query: 187 VLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG 241
           VL      +P     +P        EL    DAL + C LT+ TR +I    +  +    
Sbjct: 174 VLIGQLPGRPARPDRLPLD------ELLPQVDALTLHCPLTEHTRHLIGARELALMKPGA 227

Query: 242 IIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE---LLELD--NVVLQPHR 296
           +++N  RG ++DE  +   L  G + GA  DV   EP  P     LL  D   +++ PH 
Sbjct: 228 LLINTARGGLVDEQALADALRSGHLGGAATDVLSVEP--PVNGNPLLAPDIPRLIVTPHS 285

Query: 297 AVFTSECFVDLCELAVGNLEALFSNQPL 324
           A  + E    +      N  A F+ +PL
Sbjct: 286 AWGSREARQRIVGQLAENARAFFAGKPL 313

Length = 317

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  116 bits (294), Expect = 2e-30
 Identities = 77/291 (26%), Positives = 128/291 (43%), Gaps = 46/291 (15%)

Query: 56  ISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHI-------HMPECRRRGIA 108
            +    ++  L     P    +L  LP L+ + +  AGV+H+        +P  R     
Sbjct: 34  PADPADVDYALVWKPPP---GLLARLPNLKAIFSLGAGVDHLLADPDLPDVPIVR----- 85

Query: 109 VANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQ---GLWSKIGDYPLGSKLGGKRVG 165
           + + G   +   A+  +  ++ + R +   DR+  Q   G+W  +      ++    RVG
Sbjct: 86  LVDPG--LAQGMAEYVLAAVLRLHRDM---DRYAAQQRRGVWKPL-PQRPAAER---RVG 136

Query: 166 IVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELA---------ANSDALI 216
           ++GLG +G  VA+RL A G  V   SRS K +       V             A +D L+
Sbjct: 137 VLGLGELGAAVARRLAALGFPVSGWSRSPKDIE-----GVTCFHGEEGLDAFLAQTDILV 191

Query: 217 ICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFEN 276
               LT +TR ++N E++  L +   ++NVGRG  + E +++  L  G ++GA LDVFE 
Sbjct: 192 CLLPLTPETRGILNAELLARLPRGAALINVGRGPHLVEADLLAALDSGHLSGAVLDVFEQ 251

Query: 277 EPYVPKE--LLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLL 325
           EP +P +  L     V + PH A  T             N+  L + +PL 
Sbjct: 252 EP-LPADHPLWRHPRVTVTPHIAAITD--PDSAAAQVAENIRRLEAGEPLP 299

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  115 bits (289), Expect = 2e-29
 Identities = 69/246 (28%), Positives = 125/246 (50%), Gaps = 25/246 (10%)

Query: 76  DILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDA---ADAAVGLLIDVW 132
           DI+    +++L++    G+  + +    + GI VA   S  + +A   A+ A+ L++ + 
Sbjct: 75  DIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLL 134

Query: 133 RKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSR 192
           RK +     L+     +    P+G  L GK V I+G G IG+++AKRL+ FG  +L   R
Sbjct: 135 RKQNEMQISLKA----RRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRR 190

Query: 193 S--KKPVPYAFYSN---------------VCELAANSDALIICCALTDQTRRMINREVML 235
           S   +P       N               + E A  +D +++CC LT +T  ++N E + 
Sbjct: 191 SWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLS 250

Query: 236 ALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE-LLELDNVVLQP 294
           ++ K  ++VN+ RG ++D + ++  L  G + G  +DV  +EP+ P + +L+  NV++ P
Sbjct: 251 SMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITP 310

Query: 295 HRAVFT 300
           H A  T
Sbjct: 311 HVAGVT 316

Length = 347

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score =  115 bits (289), Expect = 3e-29
 Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 26/231 (11%)

Query: 91  SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKI 150
           + G N++ +    + GIAV N   + ++  A+ A  L +   R+I  AD F+R GL+   
Sbjct: 94  AVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYE-- 151

Query: 151 GDYP---LGSKLGGKRVGIVGLGNIGLQVAKRL-QAFGCNVLY----------------- 189
           G  P   +G+ L G+ VG++G G IG   A+ + + F  N++Y                 
Sbjct: 152 GWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYG 211

Query: 190 ---NSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNV 246
               +  ++PV +   S++ E+   +D + +   L   T  +IN+E +  + KE ++VN 
Sbjct: 212 QFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNA 271

Query: 247 GRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRA 297
            RG VIDE  +V  L    +   GLDVFE+EPY+   L ++ N V+ PH A
Sbjct: 272 SRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIA 322

Length = 386

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score =  113 bits (283), Expect = 5e-29
 Identities = 77/244 (31%), Positives = 125/244 (51%), Gaps = 11/244 (4%)

Query: 83  KLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFL 142
           K +++ + SAGV+HI +       +  +NAG+ +S   A+ A  LL+   + I   +  +
Sbjct: 49  KTKMIQSLSAGVDHIDVSGIPENVVLCSNAGA-YSISVAEHAFALLLAWAKNICENNYNM 107

Query: 143 RQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRS-KKPVPYAF 201
           + G + +     L   L  K +GI+G G IG +VA   +AFG N+   +RS       + 
Sbjct: 108 KNGNFKQS-PTKL---LYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDGISSI 163

Query: 202 YSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGI-IVNVGRGAVIDENEMVRC 260
           Y    ++   SD ++I   LTD+TR MIN + ML+L ++G+ I+NV R  V+D+N+M+  
Sbjct: 164 YMEPEDIMKKSDFVLISLPLTDETRGMINSK-MLSLFRKGLAIINVARADVVDKNDMLNF 222

Query: 261 LVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLC-ELAVGNLEALF 319
           L          DV+ NEP + +     DNV+L PH A   S   +     LA  N++  F
Sbjct: 223 LRNHNDKYYLSDVWWNEPIITETN--PDNVILSPHVAGGMSGEIMQPAVALAFENIKNFF 280

Query: 320 SNQP 323
             +P
Sbjct: 281 EGKP 284

Length = 303

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  109 bits (275), Expect = 9e-28
 Identities = 79/255 (30%), Positives = 126/255 (49%), Gaps = 23/255 (9%)

Query: 84  LRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLR 143
           LR V   S+G+++   P+    G  V  A  + ++  A+  +  ++      ++A R   
Sbjct: 65  LRWVQLVSSGIDY--YPDWLFEGPVVTCARGVAAEAIAEFVLAAIL------AAAKRL-- 114

Query: 144 QGLWSK-IGDY---PLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPY 199
             +W K    +   PLGS L G  +GIVG G IG  +A+R  A G  VL   RS +P   
Sbjct: 115 PEIWVKGAEQWRREPLGS-LAGSTLGIVGFGAIGQALARRALALGMRVLALRRSGRPSDV 173

Query: 200 ---AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGI-IVNVGRGAVIDEN 255
                 +++ EL A SD L++   LT +TR +IN +V LA  K G+ ++N+ RG ++D+ 
Sbjct: 174 PGVEAAADLAELFARSDHLVLAAPLTPETRHLINADV-LAQAKPGLHLINIARGGLVDQE 232

Query: 256 EMVRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTSECFVDLCELAVG 313
            ++  L  G I+ A LDV + EP +P+   L     V L PH +    +   +L +  + 
Sbjct: 233 ALLEALDSGRISLASLDVTDPEP-LPEGHPLYTHPRVRLSPHTSAIAPDGRRNLADRFLE 291

Query: 314 NLEALFSNQPLLSPV 328
           NL    + QPL   V
Sbjct: 292 NLARYRAGQPLHDLV 306

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score =  109 bits (273), Expect = 2e-27
 Identities = 71/254 (27%), Positives = 118/254 (46%), Gaps = 13/254 (5%)

Query: 74  TLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDV-- 131
           T + L  LPKL+L+   + G N++ +   +  GIAV N     S    +  +G++  +  
Sbjct: 56  TRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKH 115

Query: 132 ----WRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNV 187
               W +   +DR+     +    DYP+ + + G  +G+ G G +G +V +  QA G  V
Sbjct: 116 SLMGWYRDQLSDRWATCKQFCYF-DYPI-TDVRGSTLGVFGKGCLGTEVGRLAQALGMKV 173

Query: 188 LYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVG 247
           LY       V    Y+   E+   +D + + C LT+ T+ +IN E +  +     ++N G
Sbjct: 174 LYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTG 233

Query: 248 RGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELL-----ELDNVVLQPHRAVFTSE 302
           RG ++DE  ++  L  G+IAGA LDV   EP      L      L N+++ PH A  +  
Sbjct: 234 RGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDS 293

Query: 303 CFVDLCELAVGNLE 316
               L      N+E
Sbjct: 294 AVTTLVNKVAQNIE 307

Length = 314

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  105 bits (263), Expect = 4e-26
 Identities = 76/258 (29%), Positives = 117/258 (45%), Gaps = 23/258 (8%)

Query: 57  SHAHSIEAILCSGDSPVTL-DILRLLPKLRLVVTASAGVNHI----HMPECRRRGIAVAN 111
           +  H  E ++  G+S   L D  R L +LR V   +AG + +      PE     +AV +
Sbjct: 32  AEHHDAEVLVVWGNSSDNLADAARRLTRLRWVQALAAGPDAVLAAGFAPE-----VAVTS 86

Query: 112 AGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK-------IGDYPLGSKLGGKRV 164
              +     A+  + L++   R++       R+  W+        +      + L G RV
Sbjct: 87  GRGLHDGTVAEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLLGARV 146

Query: 165 GIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP---VPYAFYSNVCELAANSDALIICCAL 221
            I G G+IG ++A  L A G  V   +RS       P      + EL   +D L++    
Sbjct: 147 LIWGFGSIGQRLAPLLTALGARVTGVARSAGERAGFPVVAEDELPELLPETDVLVMILPA 206

Query: 222 TDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP 281
           T  T   ++ EV+ AL K   +VNVGRGA +DE+ +V  L  G + GA LDV   EP +P
Sbjct: 207 TPSTAHALDAEVLAALPKHAWVVNVGRGATVDEDALVAALESGRLGGAALDVTATEP-LP 265

Query: 282 KE--LLELDNVVLQPHRA 297
               L +  N++L PH A
Sbjct: 266 ASSPLWDAPNLILTPHAA 283

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score =  105 bits (265), Expect = 5e-26
 Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 15/212 (7%)

Query: 82  PKLRLVVTASAGVNHIHMPECRRRGIAVAN-AGSIFSDDAADAAVGLLIDVWRKISSADR 140
             L+L +TA  G +H+ +     RGI VA   GS     A    + +LI V R       
Sbjct: 83  KNLKLALTAGIGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILILV-RNYVPGHE 141

Query: 141 FLRQGLWSKIGDYPLGSK---LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV 197
              +G W  + D  +  +   L GK VG VG G IGL+V +RL+ F  ++LY  R + P 
Sbjct: 142 QAIEGGW-NVAD--VVKRAYDLEGKTVGTVGAGRIGLRVLRRLKPFDVHLLYYDRHRLPE 198

Query: 198 PYA------FYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAV 251
                     ++++ ++ +  D + I C L  +T  + N+E++  + K   +VN  RG +
Sbjct: 199 EVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMKKGAYLVNTARGKI 258

Query: 252 IDENEMVRCLVRGEIAGAGLDVFENEPYVPKE 283
            D   +   L  G +AG   DV+  +P  PK+
Sbjct: 259 CDREAVAEALESGHLAGYAGDVWFPQP-APKD 289

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score =  106 bits (266), Expect = 6e-26
 Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 10/205 (4%)

Query: 82  PKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRF 141
           P L+L +TA  G +H+ +      GI VA      S   A+  V +++ + R    + R 
Sbjct: 113 PNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQ 172

Query: 142 LRQGLWSKIGDYPLGS-KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPY- 199
             +G W+ I D    S  L G  VGIVG G IGL V +RL+ F   + Y  R + P    
Sbjct: 173 AVEGGWN-IADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVE 231

Query: 200 -----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG-IIVNVGRGAVID 253
                 ++ +   L +  D + I C L  +T  + +   +L+  K G  +VN  RG ++D
Sbjct: 232 QELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFD-ADVLSRMKRGSYLVNTARGKIVD 290

Query: 254 ENEMVRCLVRGEIAGAGLDVFENEP 278
            + +VR L  G +AG   DV+  +P
Sbjct: 291 RDAVVRALESGHLAGYAGDVWFPQP 315

Length = 385

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score =  101 bits (253), Expect = 2e-24
 Identities = 75/297 (25%), Positives = 132/297 (44%), Gaps = 29/297 (9%)

Query: 42  LKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKL--RLVVTASAGVNHIHM 99
           L   E  L+ E   +  A   +A++  G+     + L +  +   + V T + G NHI +
Sbjct: 27  LTLVEEYLNDEN--VHLAKGHDAVIVRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDL 84

Query: 100 PECRRRGIAVANAGSIFSDDA-ADAAVGLLIDVWRKIS-SADRFLRQGLWSKIGDYPLGS 157
              +  G  +A   S +S +A A+ A  L + + R  + +A R   +    K+  +    
Sbjct: 85  EAAKELGFKMARVPS-YSPNAIAELAFTLAMTLSRHTAYTASRTANKNF--KVDPFMFSK 141

Query: 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YNSRSKKPVP-YAFYSNVCELAANSDAL 215
           ++    VGI+G G IGL  AK  +  G  V+ Y+            + ++ EL   SD +
Sbjct: 142 EIRNSTVGIIGTGRIGLTAAKLFKGLGAKVIGYDIYPSDAAKDVVTFVSLDELLKKSDII 201

Query: 216 IICCA-LTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVF 274
            +    +  +  ++IN+E +  +    I++N  RG + DE  ++  L  G++AG G DV 
Sbjct: 202 SLHVPYIKGKNDKLINKEFISKMKDGAILINTARGELQDEEAILEALESGKLAGFGTDVL 261

Query: 275 ENE---------------PYVPKELLEL-DNVVLQPHRAVFTSECFVDLCELAVGNL 315
            NE               P V ++LL+L   V+L PH   +T E   ++ E +  NL
Sbjct: 262 NNEKEIFFKDFDGDKIEDPVV-EKLLDLYPRVLLTPHIGSYTDEALSNMIETSYENL 317

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score =  100 bits (250), Expect = 8e-24
 Identities = 70/224 (31%), Positives = 107/224 (47%), Gaps = 21/224 (9%)

Query: 73  VTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVAN-AGSIFSDDAADAAVGLLIDV 131
           VT + ++    L L++TA  G +HI +P     G+ VA   GS     A D  + +LI +
Sbjct: 111 VTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILL 170

Query: 132 ------WRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGC 185
                 + ++ S       G W+  G       L GK VG VG G IG  + +RL+ F C
Sbjct: 171 RNFLPGYHQVVS-------GEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 223

Query: 186 NVLYNSRSK------KPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGK 239
           N+LY+ R K      K     F  ++  +    D ++I   LT++TR M N+E +  + K
Sbjct: 224 NLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKK 283

Query: 240 EGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE 283
             +IVN  RGA++D   +      G I G G DV+  +P  PK+
Sbjct: 284 GVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQP-APKD 326

Length = 386

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score = 98.3 bits (246), Expect = 4e-23
 Identities = 78/242 (32%), Positives = 117/242 (48%), Gaps = 33/242 (13%)

Query: 73  VTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSD--DAADAAVGLLID 130
           +T ++L    KL  +     G N + +    +RGI V NA   FS+    A+  +G +I 
Sbjct: 65  LTEEVLAAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAP--FSNTRSVAELVIGEIIL 122

Query: 131 VWRKISSADRFLRQGLWSKIGDYPLGS-KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY 189
           + R I   +    +G W+K      GS ++ GK +GIVG G+IG Q++   ++ G  V +
Sbjct: 123 LLRGIPEKNAKAHRGGWNKSAA---GSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYF 179

Query: 190 ----------NSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGK 239
                     N+R    V      ++ EL A SD + +    T  T+ MI  E  LAL K
Sbjct: 180 YDIEDKLPLGNAR---QV-----GSLEELLAQSDVVSLHVPETPSTKNMIGAEE-LALMK 230

Query: 240 EG-IIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE-----LLELDNVVLQ 293
            G I++N  RG V+D + +   L  G +AGA +DVF  EP    +     L  LDNV+L 
Sbjct: 231 PGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILT 290

Query: 294 PH 295
           PH
Sbjct: 291 PH 292

Length = 409

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 61/260 (23%), Positives = 106/260 (40%), Gaps = 40/260 (15%)

Query: 83  KLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFL 142
           ++R V T + G +H+ +      GI  ++A    +    D  +G L+             
Sbjct: 58  RVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLL------------- 104

Query: 143 RQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNS--RSKKPVPYA 200
                ++      G  L  +  G+VG G++G ++ + L+  G  VL     R +      
Sbjct: 105 ---TLAERE----GVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGDGD 157

Query: 201 FYSNVCELAANSDALIICCALT----DQTRRMINREVMLALGKEGIIVNVGRGAVIDENE 256
           F S +  +    D + +   LT      TR +++   + +L     ++N  RGAV+D   
Sbjct: 158 FVS-LERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQA 216

Query: 257 MVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVL-QPHRAVF--------TSECFVDL 307
           +   L+ GE   A LDV+E EP +  EL +L    +  PH A +        T++ +  L
Sbjct: 217 LREALLSGEDLDAVLDVWEGEPQIDLELADL--CTIATPHIAGYSLDGKARGTAQIYQAL 274

Query: 308 CELAVGNLEALFSNQPLLSP 327
           C      + A  S   LL P
Sbjct: 275 CR--FFGIPARVSLTDLLPP 292

Length = 381

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score = 76.9 bits (189), Expect = 7e-16
 Identities = 61/263 (23%), Positives = 117/263 (44%), Gaps = 31/263 (11%)

Query: 82  PKL-----RLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKIS 136
           PKL     + +   +AG +   +   ++  I ++N  S   +  A+ +V + + + R+  
Sbjct: 63  PKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFP 122

Query: 137 SADRFLRQG--LWSKIGDYPLGSK-LGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YNSR 192
             +R ++     W       + SK +    V I+G G IG   AK    FG  +  Y++ 
Sbjct: 123 DIERRVQAHDFTWQA----EIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAY 178

Query: 193 SKKPVPYAFYSNVCELA-ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAV 251
             K + +  Y +  + A  ++D + +      ++  + ++ +   + K  I+VN  RGAV
Sbjct: 179 PNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAV 238

Query: 252 IDENEMVRCLVRGEIAGAGLDVFENE-PYVP-------------KELLELDNVVLQPHRA 297
           I+  +++  +  G + GA +D +ENE  Y                EL+E + +++ PH A
Sbjct: 239 INTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIA 298

Query: 298 VFTSECFVDLCELAVGNLEALFS 320
            F+ E   +L E   G L A  S
Sbjct: 299 FFSDEAVQNLVE---GGLNAALS 318

Length = 330

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score = 74.4 bits (183), Expect = 5e-15
 Identities = 66/290 (22%), Positives = 123/290 (42%), Gaps = 31/290 (10%)

Query: 46  ESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKL--RLVVTASAGVNHIHMPECR 103
           + +L+ +   +      + +  S   P++  I +LL +L  + +   SAG +   +    
Sbjct: 32  KEALTDDN--VEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELAT 89

Query: 104 RRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKR 163
           +  + ++N  S   +  A+  V   I++ R  +     +R+  +       L   +   +
Sbjct: 90  KYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPI-LSRSIKDLK 148

Query: 164 VGIVGLGNIGLQVAKRL-QAFGCNVL-YN-SRSKKPVPYAFYSNVCELA-ANSDALIICC 219
           V ++G G IGL VAK   + +G +V+ Y+   + K   Y  Y +  E A   +D + +  
Sbjct: 149 VAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHM 208

Query: 220 ALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENE-P 278
             T     + N ++     K  + VN  RG+++D   ++  L  G I GA LD +E E P
Sbjct: 209 PATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERP 268

Query: 279 YVP-------------KELLELDNVVLQPHRAVFTSECFVDLCELAVGNL 315
             P             + L+  ++V+L PH A +T          AV NL
Sbjct: 269 LFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDA--------AVKNL 310

Length = 332

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 68/267 (25%), Positives = 99/267 (37%), Gaps = 36/267 (13%)

Query: 63  EAILCSGDSPVTLDILRLLPKLR-------LVVTASAGVNHIHMPECRRRGIAVANAGSI 115
           + +L S  + +  ++L   P ++       L    SA V+   +   R  GI V     I
Sbjct: 48  DCVLVSYTTQIDEEVLEACPNIKYIGMCCSLYSEESANVD---IAAARENGITVT---GI 101

Query: 116 FSDDAADAAVGLLIDVWRKISSADRFL---RQGLWSKIGDYPLGSKLGGKRVGIVGLGNI 172
              D  D  V   +     IS   R L       W          +L G +VGI+GLG  
Sbjct: 102 R--DYGDEGVVEYV-----ISELIRLLHGFGGKQWK-----EEPRELTGLKVGIIGLGTT 149

Query: 173 GLQVAKRLQAFGCNVLYNSRSKKPVPYA---FYSNVCELAANSDALIICCALTDQTRRMI 229
           G  +A  L  FG +V Y SR++KP   A    Y  + EL    D  +IC  L      + 
Sbjct: 150 GQMIADALSFFGADVYYYSRTRKPDAEAKGIRYLPLNELLKTVD--VICTCLPKNVILL- 206

Query: 230 NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDN 289
             E    LG   I+ N   G   +   + + L          D         +ELL   N
Sbjct: 207 GEEEFELLGDGKILFNTSLGPSFEVEALKKWLKASGYNIFDCD--TAGALGDEELLRYPN 264

Query: 290 VVLQPHRAVFTSECFVDLCELAVGNLE 316
           V+     A +T + F  L +  + NLE
Sbjct: 265 VICTNKSAGWTRQAFERLSQKVLANLE 291

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

>gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

 Score = 68.3 bits (167), Expect = 6e-13
 Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 7/143 (4%)

Query: 164 VGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVP----YAFYSNVCELAANSDALIICC 219
           +GI+G G +G +VA+ LQ +G  +   SRS+K  P    +A    +    + +  LI   
Sbjct: 139 IGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLL 198

Query: 220 ALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPY 279
             T +T  +IN++++  L     ++N+ RG  + E++++  L  G++ GA LDVF  EP 
Sbjct: 199 PNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREP- 257

Query: 280 VPKE--LLELDNVVLQPHRAVFT 300
           +P E  L +   V + PH A  T
Sbjct: 258 LPPESPLWQHPRVAITPHVAAVT 280

Length = 312

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 64.9 bits (158), Expect = 6e-12
 Identities = 53/246 (21%), Positives = 94/246 (38%), Gaps = 18/246 (7%)

Query: 44  AYESSLSLEQFLISHAHSIEAILCSGDSP--VTLDILRLLPKLRLVVTASAGVNHIHMPE 101
           AY  + ++   L     S++ +L   +        +++ L   RL+ T + G +H  + E
Sbjct: 47  AYVQAGAIVVTLAKALWSLDVVLKVKEPLTNAEYALIQKLG-DRLLFTYTIGADHRDLTE 105

Query: 102 C-RRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLG 160
              R G+       +        ++G      + I+      + G      D      + 
Sbjct: 106 ALARAGLTAIAVEGVELPLLTSNSIGAGELSVQFIARFLEVQQPGRLGGAPD------VA 159

Query: 161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLY---NSRSKKPVPYAFYSNVCEL---AANSDA 214
           GK V +VG G +G + A+ L+  G  VL    N  + + +      NV EL    A +D 
Sbjct: 160 GKTVVVVGAGVVGKEAAQMLRGLGAQVLITDINVEALEQLEELGGKNVEELEEALAEADV 219

Query: 215 LIICCALTDQTRRMINREVMLALGKEG-IIVNVGRGAV-IDENEMVRCLVRGEIAGAGLD 272
           ++    L  +   ++  E ++   K G +IVNV  GAV   +    + L  G       D
Sbjct: 220 IVTTTLLPGKRAGILVPEELVEQMKPGSVIVNVAVGAVGCVQALHTQLLEEGHGVVHYGD 279

Query: 273 VFENEP 278
           V    P
Sbjct: 280 VNMPGP 285

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 55.7 bits (134), Expect = 9e-09
 Identities = 62/225 (27%), Positives = 102/225 (45%), Gaps = 28/225 (12%)

Query: 84  LRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLR 143
           ++ V TA+AG +H+     ++ GI  + A        A A V  +      ++  D F  
Sbjct: 59  IKFVGTATAGTDHVDEAWLKQAGIGFSAAPGC----NAIAVVEYVFSSLLMLAERDGF-- 112

Query: 144 QGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY--NSRSKKPVPYAF 201
                          L  + VGIVG+GN+G ++  RL+A G   L     R+ +     F
Sbjct: 113 --------------SLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDF 158

Query: 202 YSNVCELAANSDALIICCALTD----QTRRMINREVMLALGKEGIIVNVGRGAVIDENEM 257
            S + EL   +D L     L      +T  + + +++ +L    I++N  RGAV+D   +
Sbjct: 159 RS-LDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTAL 217

Query: 258 VRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSE 302
           + CL  G+     LDV+E EP +  ELL+  ++   PH A +T E
Sbjct: 218 LTCLNEGQKLSVVLDVWEGEPELNVELLKKVDIG-TPHIAGYTLE 261

Length = 378

>gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 14/98 (14%)

Query: 162 KRVGIVGLGNIGLQVAKRLQAFGCNV-LYNSRSKKPVPYA------FYSNVCELAANSDA 214
            ++  +GLG +G  +A  L   G  V +YN   +K             ++  E AA +D 
Sbjct: 1   MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADV 60

Query: 215 LIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVI 252
           +I         R ++        G+ G++  +  GA++
Sbjct: 61  VITMLPDDAAVRAVL-------FGENGLLEGLKPGAIV 91

Length = 286

>gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase

 Score = 37.4 bits (88), Expect = 0.003
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 15/98 (15%)

Query: 162 KRVGIVGLGNIGLQVAKRLQAFGCNVL-YNSRSKKPV------PYAFYSNVCELAANSDA 214
            ++G +GLG +G  +A  L   G  V  YN R+ + V           ++  E  A++D 
Sbjct: 1   AKIGFIGLGVMGSPMALNLLKAGYTVTVYN-RTPEKVEELVAEGAVGAASPAEFVASADV 59

Query: 215 LIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVI 252
           +I           +I       LG++G++  +  G +I
Sbjct: 60  VITMVPAGAAVDAVI-------LGEDGLLPGLKPGDII 90

The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	331
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PLN02306	386	hydroxypyruvate reductase	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PLN02928	347	oxidoreductase family protein	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
KOG0067	435	consensus Transcription factor CtBP [Transcription	99.97
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.89
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.87
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.83
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.67
PLN02494	477	adenosylhomocysteinase	99.64
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.54
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.52
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.41
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.38
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.35
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.32
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.3
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.26
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.24
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.22
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.17
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.16
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.14
PLN02712	667	arogenate dehydrogenase	99.1
PLN02256	304	arogenate dehydrogenase	99.09
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.07
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.04
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.0
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	98.98
PRK08655	437	prephenate dehydrogenase; Provisional	98.95
PLN02858	1378	fructose-bisphosphate aldolase	98.95
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	98.94
PLN02858	1378	fructose-bisphosphate aldolase	98.92
KOG0409	327	consensus Predicted dehydrogenase [General functio	98.91
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	98.9
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.88
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	98.88
PLN02712	667	arogenate dehydrogenase	98.85
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.85
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.84
PRK05225	487	ketol-acid reductoisomerase; Validated	98.84
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.83
PRK07417	279	arogenate dehydrogenase; Reviewed	98.81
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	98.81
PRK06545	359	prephenate dehydrogenase; Validated	98.78
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.75
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.75
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.74
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.73
PLN02688	266	pyrroline-5-carboxylate reductase	98.73
PRK08818	370	prephenate dehydrogenase; Provisional	98.73
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.72
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.72
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.72
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.7
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.69
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.67
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.62
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.62
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.61
PRK08507	275	prephenate dehydrogenase; Validated	98.61
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.6
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.6
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.59
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.57
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	98.56
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.55
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.54
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.54
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.54
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.53
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.52
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.5
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.5
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.5
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.49
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.49
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.48
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.44
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.44
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.43
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	98.43
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.42
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.41
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.38
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.38
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.37
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.36
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.34
PRK07680	273	late competence protein ComER; Validated	98.34
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.33
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.32
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.3
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.3
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	98.27
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.26
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.26
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.24
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	98.22
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	98.22
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.21
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.18
PLN00203	519	glutamyl-tRNA reductase	98.16
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.16
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.15
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	98.14
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.14
PTZ00431	260	pyrroline carboxylate reductase; Provisional	98.14
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.13
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.13
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.11
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	98.1
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.1
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.08
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.08
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.06
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.06
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.04
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.03
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.02
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.0
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.98
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.97
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.97
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.96
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	97.95
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.95
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.94
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.92
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.92
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.91
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.9
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.9
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.89
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.89
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.88
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.88
PRK14982	340	acyl-ACP reductase; Provisional	97.87
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.86
PRK06141	314	ornithine cyclodeaminase; Validated	97.84
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.83
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.83
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.83
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.82
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.82
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.81
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.81
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.81
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.8
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.8
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.79
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.79
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.78
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.78
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	97.77
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.74
PRK07340	304	ornithine cyclodeaminase; Validated	97.71
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.69
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.68
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.68
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.68
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.67
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.67
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.67
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.65
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.64
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.63
PRK08618	325	ornithine cyclodeaminase; Validated	97.61
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.58
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	97.57
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	97.56
PRK06823	315	ornithine cyclodeaminase; Validated	97.55
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.53
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.53
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	97.52
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.52
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	97.52
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.51
PRK06046	326	alanine dehydrogenase; Validated	97.48
PRK11730	715	fadB multifunctional fatty acid oxidation complex	97.48
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.47
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.47
PRK08291	330	ectoine utilization protein EutC; Validated	97.46
PRK06444	197	prephenate dehydrogenase; Provisional	97.44
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.44
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.4
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.39
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.38
PRK06199	379	ornithine cyclodeaminase; Validated	97.38
PRK06407	301	ornithine cyclodeaminase; Provisional	97.36
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.32
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.3
PLN02477	410	glutamate dehydrogenase	97.3
PTZ00117	319	malate dehydrogenase; Provisional	97.3
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.3
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.29
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.27
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	97.27
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	97.24
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	97.23
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	97.23
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.22
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	97.21
PRK07589	346	ornithine cyclodeaminase; Validated	97.2
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	97.16
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.04
PRK13303	265	L-aspartate dehydrogenase; Provisional	97.04
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.04
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.03
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.03
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.02
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	96.94
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.93
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	96.92
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.92
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.92
PRK14031	444	glutamate dehydrogenase; Provisional	96.91
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	96.9
PRK09414	445	glutamate dehydrogenase; Provisional	96.9
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.88
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.84
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.82
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.82
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.8
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.73
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.72
COG5322	351	Predicted dehydrogenase [General function predicti	96.64
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.61
PRK06223	307	malate dehydrogenase; Reviewed	96.6
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	96.59
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.59
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.58
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.58
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.55
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	96.54
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.49
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.49
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.48
PRK14030	445	glutamate dehydrogenase; Provisional	96.46
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.45
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.42
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	96.38
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.37
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.35
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	96.34
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.32
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.32
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	96.31
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	96.3
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	96.3
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.3
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.29
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.29
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.27
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.27
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	96.26
PRK01713	334	ornithine carbamoyltransferase; Provisional	96.24
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.23
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.2
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.19
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	96.16
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	96.16
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.15
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.1
PRK10637	457	cysG siroheme synthase; Provisional	96.09
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.08
PRK00779	304	ornithine carbamoyltransferase; Provisional	96.08
PRK02255	338	putrescine carbamoyltransferase; Provisional	96.02
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.0
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.99
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	95.96
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	95.95
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.95
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.93
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.93
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	95.92
PRK09496	453	trkA potassium transporter peripheral membrane com	95.91
PRK12861	764	malic enzyme; Reviewed	95.9
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	95.87
PRK12862	763	malic enzyme; Reviewed	95.86
PRK11891	429	aspartate carbamoyltransferase; Provisional	95.86
PRK08223	287	hypothetical protein; Validated	95.85
PLN02342	348	ornithine carbamoyltransferase	95.85
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	95.84
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.83
PRK02102	331	ornithine carbamoyltransferase; Validated	95.81
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.79
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.78
PRK11579	346	putative oxidoreductase; Provisional	95.77
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	95.73
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.73
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.66
COG2344	211	AT-rich DNA-binding protein [General function pred	95.66
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	95.58
PRK08328	231	hypothetical protein; Provisional	95.58
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.57
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	95.57
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.56
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	95.54
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.52
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	95.52
PRK04284	332	ornithine carbamoyltransferase; Provisional	95.49
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	95.47
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.46
PLN02527	306	aspartate carbamoyltransferase	95.44
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.41
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.38
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.38
PRK07411	390	hypothetical protein; Validated	95.36
PLN02948	577	phosphoribosylaminoimidazole carboxylase	95.34
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.33
PRK08265	261	short chain dehydrogenase; Provisional	95.32
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.32
PRK06270	341	homoserine dehydrogenase; Provisional	95.31
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	95.29
PRK10669	558	putative cation:proton antiport protein; Provision	95.26
PRK05086	312	malate dehydrogenase; Provisional	95.25
PRK09496	453	trkA potassium transporter peripheral membrane com	95.25
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	95.21
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.17
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	95.16
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.15
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	95.14
PRK06349	426	homoserine dehydrogenase; Provisional	95.13
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	95.12
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.12
COG0281	432	SfcA Malic enzyme [Energy production and conversio	95.1
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	95.06
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	95.06
TIGR00036	266	dapB dihydrodipicolinate reductase.	95.01
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	95.0
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	94.98
PLN02383	344	aspartate semialdehyde dehydrogenase	94.98
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.96
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.95
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	94.9
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	94.9
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.88
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.86
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	94.81
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.81
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	94.78
PLN02602	350	lactate dehydrogenase	94.76
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.76
PLN00106	323	malate dehydrogenase	94.73
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	94.67
PRK07877	722	hypothetical protein; Provisional	94.66
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	94.65
COG0673	342	MviM Predicted dehydrogenases and related proteins	94.65
PRK08300	302	acetaldehyde dehydrogenase; Validated	94.62
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	94.62
COG2910	211	Putative NADH-flavin reductase [General function p	94.59
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	94.57
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	94.57
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	94.56
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.46
PTZ00325	321	malate dehydrogenase; Provisional	94.45
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	94.42
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	94.38
PLN02586	360	probable cinnamyl alcohol dehydrogenase	94.29
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.28
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.27
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	94.27
PRK14804	311	ornithine carbamoyltransferase; Provisional	94.27
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.22
CHL00194	317	ycf39 Ycf39; Provisional	94.21
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	94.21
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	94.19
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	94.14
PRK08192	338	aspartate carbamoyltransferase; Provisional	94.11
PRK06182	273	short chain dehydrogenase; Validated	94.08
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	94.01
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	94.01
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	93.96
PRK04148	134	hypothetical protein; Provisional	93.88
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	93.86
PRK14851	679	hypothetical protein; Provisional	93.73
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.69
PRK06392	326	homoserine dehydrogenase; Provisional	93.69
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	93.69
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	93.64
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	93.62
PRK06398	258	aldose dehydrogenase; Validated	93.61
PRK10206	344	putative oxidoreductase; Provisional	93.59
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	93.54
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	93.49
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	93.41
PLN02214	342	cinnamoyl-CoA reductase	93.39
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	93.36
PRK06523	260	short chain dehydrogenase; Provisional	93.35
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	93.23
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	93.22
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	93.19
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	93.19
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	93.18
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	93.18
PRK07523	255	gluconate 5-dehydrogenase; Provisional	93.18
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.11
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	93.11
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	93.1
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	93.08
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	93.05
PLN02896	353	cinnamyl-alcohol dehydrogenase	93.02
PLN02514	357	cinnamyl-alcohol dehydrogenase	92.96
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	92.96
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	92.94
PRK08628	258	short chain dehydrogenase; Provisional	92.9
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	92.88
PLN02178	375	cinnamyl-alcohol dehydrogenase	92.88
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	92.88
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	92.86
PRK08374	336	homoserine dehydrogenase; Provisional	92.78
PRK08324	681	short chain dehydrogenase; Validated	92.76
PRK05442	326	malate dehydrogenase; Provisional	92.7
PLN02695	370	GDP-D-mannose-3',5'-epimerase	92.7
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	92.63
PRK07856	252	short chain dehydrogenase; Provisional	92.63
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	92.61
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	92.57
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	92.57
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	92.56
PLN03209	576	translocon at the inner envelope of chloroplast su	92.53
PRK06196	315	oxidoreductase; Provisional	92.5
PRK15076	431	alpha-galactosidase; Provisional	92.48
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	92.47
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	92.44
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	92.44
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	92.44
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	92.42
PRK13529	563	malate dehydrogenase; Provisional	92.4
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	92.4
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.37
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	92.33
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	92.31
PRK06114	254	short chain dehydrogenase; Provisional	92.3
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	92.28
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	92.27
PRK05884	223	short chain dehydrogenase; Provisional	92.25
PLN02427	386	UDP-apiose/xylose synthase	92.25
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	92.21
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	92.18
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	92.17
PRK07806	248	short chain dehydrogenase; Provisional	92.14
PRK07825	273	short chain dehydrogenase; Provisional	92.08
PRK08589	272	short chain dehydrogenase; Validated	92.04
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	92.04
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	92.03
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	92.01
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	92.0
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	91.99
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	91.97
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	91.97
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	91.95
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	91.93
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	91.9
PRK12367	245	short chain dehydrogenase; Provisional	91.89
PRK08862	227	short chain dehydrogenase; Provisional	91.86
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	91.78
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	91.71
PLN03129	581	NADP-dependent malic enzyme; Provisional	91.71
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	91.63
PRK14852	989	hypothetical protein; Provisional	91.63
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	91.6
PRK10537	393	voltage-gated potassium channel; Provisional	91.6
PRK05865	854	hypothetical protein; Provisional	91.6
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	91.58
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	91.53
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	91.49
PRK06179	270	short chain dehydrogenase; Provisional	91.35
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	91.32
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	91.31
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	91.31
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	91.27
PRK05717	255	oxidoreductase; Validated	91.27
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	91.22
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.22
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	91.2
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	91.19
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	91.13
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	91.09
PRK06153	393	hypothetical protein; Provisional	91.07

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=7.5e-75  Score=550.91  Aligned_cols=314  Identities=28%  Similarity=0.426  Sum_probs=276.8

Q ss_pred             CCCeEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCC
Q 020073           14 HLPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAG   93 (331)
Q Consensus        14 ~k~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G   93 (331)
                      ||++|+++.+.  ++...+. |++.+++..+........+.+.+.+.++|++++. ..++++++++++|+||+|+++|+|
T Consensus         1 ~~~~vl~~~~~--~~~~~~~-l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~-~~~~~~~~l~~~p~Lk~I~~~g~G   76 (323)
T PRK15409          1 MKPSVILYKAL--PDDLLQR-LEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGS-GEKVDAALLEKMPKLRAASTISVG   76 (323)
T ss_pred             CCceEEEeCCC--CHHHHHH-HHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEc-CCCCCHHHHhhCCCCeEEEECcee
Confidence            35889999976  5677777 8777776543221111223345566899999875 458999999999999999999999


Q ss_pred             CCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCC-CCCCCccCCCceEEEEecChH
Q 020073           94 VNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIG-DYPLGSKLGGKRVGIVGLGNI  172 (331)
Q Consensus        94 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~-~~~~~~~l~g~~vgIiG~G~I  172 (331)
                      +|+||+++|+++||.|+|+||+++++||||++++||+++|++..+++.+++|.|.... ....|.+|+|||+||||+|+|
T Consensus        77 ~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~I  156 (323)
T PRK15409         77 YDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRI  156 (323)
T ss_pred             cccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHH
Confidence            9999999999999999999999999999999999999999999999999999996431 112478999999999999999


Q ss_pred             HHHHHHHHh-hCCCEEEEECCCCCC-C---CccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcC
Q 020073          173 GLQVAKRLQ-AFGCNVLYNSRSKKP-V---PYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       173 G~~~A~~l~-~~G~~V~~~~~~~~~-~---~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      |+.+|++++ +|||+|++|+++... .   ....+.++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|
T Consensus       157 G~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~a  236 (323)
T PRK15409        157 GMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAG  236 (323)
T ss_pred             HHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECC
Confidence            999999998 999999999987543 1   11234689999999999999999999999999999999999999999999


Q ss_pred             CCCccCHHHHHHHHHhCCceEEEeecCCCCCCCC-CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 020073          248 RGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP-KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLS  326 (331)
Q Consensus       248 rg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~-~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~  326 (331)
                      ||++||++||++||++|+|+||+||||++||++. +|||++|||++|||+||.|.+++.++...+++||.+|++|+++.|
T Consensus       237 RG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~  316 (323)
T PRK15409        237 RGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVEKN  316 (323)
T ss_pred             CccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            9999999999999999999999999999999864 489999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 020073          327 PVTAE  331 (331)
Q Consensus       327 ~v~~~  331 (331)
                      .||++
T Consensus       317 ~vn~~  321 (323)
T PRK15409        317 CVNPQ  321 (323)
T ss_pred             ccCcc
Confidence            99975

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=2e-74  Score=546.11  Aligned_cols=313  Identities=37%  Similarity=0.571  Sum_probs=280.3

Q ss_pred             CCCeEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCC
Q 020073           14 HLPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAG   93 (331)
Q Consensus        14 ~k~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G   93 (331)
                      +|+.++...+.  +++..++ +.+.|++..+.....+.. .+.+.+.++|++++....++++++++++|+||+|++.|+|
T Consensus         1 mk~~~~~~~~~--~~~~~~~-l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G   76 (324)
T COG1052           1 MKIVVLSTRKL--PPEVLER-LKEKFEVERYEDDLTPDT-ELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAG   76 (324)
T ss_pred             CCcEEEecCcC--CHHHHHH-hhccEEEEEeccCCccch-HHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccc
Confidence            45777777665  5677778 888888655433212222 4556668999999987889999999999999999999999


Q ss_pred             CCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCC--CCCCCccCCCceEEEEecCh
Q 020073           94 VNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIG--DYPLGSKLGGKRVGIVGLGN  171 (331)
Q Consensus        94 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~--~~~~~~~l~g~~vgIiG~G~  171 (331)
                      |||||+++|+++||.|+|+|++++++||||++++||++.|++...++++|+|.|...+  ....+.+++|||+||||+|+
T Consensus        77 ~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~Gr  156 (324)
T COG1052          77 YDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGR  156 (324)
T ss_pred             cCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCH
Confidence            9999999999999999999999999999999999999999999999999999998753  23468899999999999999


Q ss_pred             HHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEc
Q 020073          172 IGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNV  246 (331)
Q Consensus       172 IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~  246 (331)
                      ||+++|+++++|||+|+||+|++.+     .+..+ .+++|++++||+|++|||+|++|+||||++.|++||+|++|||+
T Consensus       157 IG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y-~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNt  235 (324)
T COG1052         157 IGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARY-VDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNT  235 (324)
T ss_pred             HHHHHHHHHhcCCCEEEEECCCCChHHHhhcCcee-ccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEEC
Confidence            9999999999999999999998743     22344 45999999999999999999999999999999999999999999


Q ss_pred             CCCCccCHHHHHHHHHhCCceEEEeecCCCCCCC-CCccccCCc---eEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 020073          247 GRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYV-PKELLELDN---VVLQPHRAVFTSECFVDLCELAVGNLEALFSNQ  322 (331)
Q Consensus       247 srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~-~~~L~~~~n---vilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~  322 (331)
                      |||++||++||++||++|+|+|||||||+.||.. +++|+.++|   |++|||+|++|.+++.+|.+.+++|+.+|++|+
T Consensus       236 aRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~  315 (324)
T COG1052         236 ARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGG  315 (324)
T ss_pred             CCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999985 568888777   999999999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q 020073          323 PLLSPVTAE  331 (331)
Q Consensus       323 ~~~~~v~~~  331 (331)
                      .+.++|+++
T Consensus       316 ~~~~~v~~~  324 (324)
T COG1052         316 VPPNEVNPE  324 (324)
T ss_pred             CCCCCCCCC
Confidence            999999985

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-74  Score=547.16  Aligned_cols=310  Identities=32%  Similarity=0.467  Sum_probs=273.4

Q ss_pred             CCCeEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCC
Q 020073           14 HLPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAG   93 (331)
Q Consensus        14 ~k~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G   93 (331)
                      ++.+++...+.  .++.++. +...... .........++.+.+.+.++|++++ +.+++++++++.+|+||+|++.|+|
T Consensus         2 ~~~~vl~~~~~--~~~~~~~-l~~~~~~-~~~~~~~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~G   76 (324)
T COG0111           2 MMIKVLVTDPL--APDALEE-LLAAYDV-EVPDGPDLDEEELLEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAG   76 (324)
T ss_pred             CcceeeccCcc--CHHHHHH-HHhcccc-ccccccccchHHHHhhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEcccc
Confidence            34678888776  6777777 6554222 2222222233445566789999988 7789999999999999999999999


Q ss_pred             CCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHH
Q 020073           94 VNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIG  173 (331)
Q Consensus        94 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG  173 (331)
                      +||||+++++++||.|+|+|+.|+.+||||+++++|+++|+++.+++.+++|.|.+.  ...|.+|+|||+||||+|.||
T Consensus        77 vd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~--~~~g~el~gkTvGIiG~G~IG  154 (324)
T COG0111          77 VDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRK--AFRGTELAGKTVGIIGLGRIG  154 (324)
T ss_pred             ccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCcccc--ccccccccCCEEEEECCCHHH
Confidence            999999999999999999999999999999999999999999999999999999863  224679999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 020073          174 LQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       174 ~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      +.+|+++++|||+|++||+....     .+.....+|++++++||||++|+|+|++|+||||++.|++||+|++|||+||
T Consensus       155 ~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aR  234 (324)
T COG0111         155 RAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAAR  234 (324)
T ss_pred             HHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCC
Confidence            99999999999999999995433     2344567899999999999999999999999999999999999999999999


Q ss_pred             CCccCHHHHHHHHHhCCceEEEeecCCCCCCCCC-ccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC---C
Q 020073          249 GAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPK-ELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQP---L  324 (331)
Q Consensus       249 g~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~-~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~---~  324 (331)
                      |++||++||++||++|+|+||+||||++||++++ |||++|||++|||+||+|.|+..++...+++|+.+|++|++   .
T Consensus       235 G~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~  314 (324)
T COG0111         235 GGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPVVNN  314 (324)
T ss_pred             cceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            9999999999999999999999999999998875 99999999999999999999999999999999999999999   4


Q ss_pred             CCCCCC
Q 020073          325 LSPVTA  330 (331)
Q Consensus       325 ~~~v~~  330 (331)
                      .+.|+.
T Consensus       315 ~~~v~~  320 (324)
T COG0111         315 APEVDL  320 (324)
T ss_pred             cccccc
Confidence            555543

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=2.4e-72  Score=536.52  Aligned_cols=315  Identities=34%  Similarity=0.514  Sum_probs=277.9

Q ss_pred             CCCeEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCC
Q 020073           14 HLPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAG   93 (331)
Q Consensus        14 ~k~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G   93 (331)
                      ||+||+++.+.  .+...+. |++.+++..+........+.+.+.++++|+++++...++++++++++|+||||+++|+|
T Consensus         1 ~~~kil~~~~~--~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G   77 (333)
T PRK13243          1 MKPKVFITREI--PENGIEM-LEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVG   77 (333)
T ss_pred             CCceEEEECCC--CHHHHHH-HhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCcc
Confidence            46889998865  5666667 87777654332211112334456678999998876668999999999999999999999


Q ss_pred             CCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCC-----CCCCCccCCCceEEEEe
Q 020073           94 VNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIG-----DYPLGSKLGGKRVGIVG  168 (331)
Q Consensus        94 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~-----~~~~~~~l~g~~vgIiG  168 (331)
                      +|+||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|....     ....|.+|+|+||||||
T Consensus        78 ~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG  157 (333)
T PRK13243         78 YDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIG  157 (333)
T ss_pred             ccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEEC
Confidence            9999999999999999999999999999999999999999999999999999997421     11246799999999999


Q ss_pred             cChHHHHHHHHHhhCCCEEEEECCCCCCC----CccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEE
Q 020073          169 LGNIGLQVAKRLQAFGCNVLYNSRSKKPV----PYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIV  244 (331)
Q Consensus       169 ~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lI  244 (331)
                      +|.||+.+|+++++|||+|++|+++....    ......++++++++||+|++|+|++++|+++|+++.|++||+|++||
T Consensus       158 ~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lI  237 (333)
T PRK13243        158 FGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILV  237 (333)
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE
Confidence            99999999999999999999999976541    11124589999999999999999999999999999999999999999


Q ss_pred             EcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 020073          245 NVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPL  324 (331)
Q Consensus       245 n~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~  324 (331)
                      |+|||++||++||+++|++|+|+||+||||++||++++|||++|||++|||+||+|.++..++.+.+++||.+|++|+++
T Consensus       238 N~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~  317 (333)
T PRK13243        238 NTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVP  317 (333)
T ss_pred             ECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999998867999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q 020073          325 LSPVTAE  331 (331)
Q Consensus       325 ~~~v~~~  331 (331)
                      .|.||++
T Consensus       318 ~~~v~~~  324 (333)
T PRK13243        318 PTLVNRE  324 (333)
T ss_pred             CcccCHH
Confidence            9999863

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=3.1e-71  Score=524.30  Aligned_cols=301  Identities=26%  Similarity=0.421  Sum_probs=262.6

Q ss_pred             eEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCCC
Q 020073           17 RVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNH   96 (331)
Q Consensus        17 ~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~   96 (331)
                      ||+++.+..+.+...+. |++.+++..+ ... +. +.+.+.+.++|+++++ ..++++++++++|+||||+++|+|+|+
T Consensus         2 ki~~~~~~~~~~~~~~~-l~~~~~~~~~-~~~-~~-~~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~   76 (311)
T PRK08410          2 KIVILDAKTLGDKDLSV-FEEFGDFQIY-PTT-SP-EEVIERIKDANIIITN-KVVIDKEVLSQLPNLKLICITATGTNN   76 (311)
T ss_pred             eEEEEecCCCChhhHHH-HhhCceEEEe-CCC-CH-HHHHHHhCCCCEEEEC-CCCCCHHHHhhCCCCeEEEEccccccc
Confidence            37777764345555666 7776665443 221 22 3345566899998874 568999999999999999999999999


Q ss_pred             CChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCC----CCccCCCceEEEEecChH
Q 020073           97 IHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYP----LGSKLGGKRVGIVGLGNI  172 (331)
Q Consensus        97 id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~----~~~~l~g~~vgIiG~G~I  172 (331)
                      ||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+|+|.|.....+.    .+++|+|||+||||+|+|
T Consensus        77 id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~I  156 (311)
T PRK08410         77 VDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTI  156 (311)
T ss_pred             ccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHH
Confidence            9999999999999999999999999999999999999999999999999997532111    246899999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEECCCCCC-CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCc
Q 020073          173 GLQVAKRLQAFGCNVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAV  251 (331)
Q Consensus       173 G~~~A~~l~~~G~~V~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~  251 (331)
                      |+++|+++++|||+|++|+++... .......++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++
T Consensus       157 G~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~v  236 (311)
T PRK08410        157 GKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGI  236 (311)
T ss_pred             HHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccc
Confidence            999999999999999999997543 1222356899999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHhCCceEEEeecCCCCCCCCC-ccccC---CceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 020073          252 IDENEMVRCLVRGEIAGAGLDVFENEPYVPK-ELLEL---DNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQP  323 (331)
Q Consensus       252 vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~-~L~~~---~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  323 (331)
                      ||++||++||++|+|+ |+||||++||++++ |||++   |||++|||+||+|.++..++...+++|+.+|++|++
T Consensus       237 VDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~~  311 (311)
T PRK08410        237 VNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGGK  311 (311)
T ss_pred             cCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999 99999999998754 89987   899999999999999999999999999999999863

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=2e-70  Score=520.05  Aligned_cols=306  Identities=24%  Similarity=0.417  Sum_probs=262.6

Q ss_pred             EEEECCCCC--CchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCC
Q 020073           18 VLVIKPPPP--LTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVN   95 (331)
Q Consensus        18 vl~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d   95 (331)
                      |++++...+  .+...+. |++.+..+...... . ++.+.+.+.++|+++++ ..++++++++++|+||||+++|+|+|
T Consensus         3 i~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~-~-~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d   78 (317)
T PRK06487          3 AVFLDHDSLDLGDLDLSP-LEQAFDELQLHDAT-T-PEQVAERLRGAQVAISN-KVALDAAALAAAPQLKLILVAATGTN   78 (317)
T ss_pred             EEEEccccCCccccchhH-HHhhCCeEEEecCC-C-HHHHHHHhCCCeEEEEe-CCCCCHHHHhhCCCCeEEEEcCcccc
Confidence            777765322  2334455 66555333322222 1 23345566899988864 56899999999999999999999999


Q ss_pred             CCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCC----CCCccCCCceEEEEecCh
Q 020073           96 HIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDY----PLGSKLGGKRVGIVGLGN  171 (331)
Q Consensus        96 ~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~----~~~~~l~g~~vgIiG~G~  171 (331)
                      +||+++++++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.....+    ..+.+|+|||+||||+|+
T Consensus        79 ~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~  158 (317)
T PRK06487         79 NVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGE  158 (317)
T ss_pred             ccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCH
Confidence            9999999999999999999999999999999999999999999999999999753211    124689999999999999


Q ss_pred             HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCc
Q 020073          172 IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAV  251 (331)
Q Consensus       172 IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~  251 (331)
                      ||+++|+++++|||+|++|+++..... ....+|++++++||+|++|+|+|++|+|+||++.|++||+|++|||+|||++
T Consensus       159 IG~~vA~~l~~fgm~V~~~~~~~~~~~-~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~v  237 (317)
T PRK06487        159 LGGAVARLAEAFGMRVLIGQLPGRPAR-PDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGL  237 (317)
T ss_pred             HHHHHHHHHhhCCCEEEEECCCCCccc-ccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccc
Confidence            999999999999999999998644322 2245899999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHhCCceEEEeecCCCCCCCC-Ccccc--CCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 020073          252 IDENEMVRCLVRGEIAGAGLDVFENEPYVP-KELLE--LDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPV  328 (331)
Q Consensus       252 vd~~al~~aL~~~~i~ga~lDV~~~EP~~~-~~L~~--~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v  328 (331)
                      ||++||++||++|+|+||+||||++||++. +|||.  +|||++|||+||+|.++..++...+++||.+|++|+++ |.|
T Consensus       238 Vde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~-~~v  316 (317)
T PRK06487        238 VDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPL-RVV  316 (317)
T ss_pred             cCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCC-cCC
Confidence            999999999999999999999999999876 48995  89999999999999999999999999999999999854 555


Q ss_pred             C
Q 020073          329 T  329 (331)
Q Consensus       329 ~  329 (331)
                      |
T Consensus       317 ~  317 (317)
T PRK06487        317 S  317 (317)
T ss_pred             C
Confidence            4

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=9.4e-70  Score=531.03  Aligned_cols=308  Identities=26%  Similarity=0.343  Sum_probs=273.3

Q ss_pred             CCeEEEECCCCCCchHHHHHHhcc-C-cEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccC
Q 020073           15 LPRVLVIKPPPPLTLFGDKFISRS-F-QLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASA   92 (331)
Q Consensus        15 k~~vl~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~   92 (331)
                      |++|+++++.  .+...+. |++. + ++.. .....+ ++.+.+.+.++|++++++..++++++++++|+||||+++|+
T Consensus        10 ~~~ili~~~~--~~~~~~~-l~~~~~~~v~~-~~~~~~-~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~   84 (409)
T PRK11790         10 KIKFLLLEGV--HQSAVEV-LRAAGYTNIEY-HKGALD-EEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGCFCI   84 (409)
T ss_pred             CeEEEEECCC--CHHHHHH-HHhcCCceEEE-CCCCCC-HHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEECce
Confidence            4578888765  5666666 7654 5 4433 222222 23345566899998877667899999999999999999999


Q ss_pred             CCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChH
Q 020073           93 GVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNI  172 (331)
Q Consensus        93 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~I  172 (331)
                      |+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.+.  ...+.+|+|||+||||+|+|
T Consensus        85 G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~--~~~~~~L~gktvGIiG~G~I  162 (409)
T PRK11790         85 GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKS--AAGSFEVRGKTLGIVGYGHI  162 (409)
T ss_pred             ecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCccccc--ccCcccCCCCEEEEECCCHH
Confidence            9999999999999999999999999999999999999999999999999999999753  12467999999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEECCCCCC--CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073          173 GLQVAKRLQAFGCNVLYNSRSKKP--VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       173 G~~~A~~l~~~G~~V~~~~~~~~~--~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                      |+.+|+++++|||+|++||++...  .+.....++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||+
T Consensus       163 G~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~  242 (409)
T PRK11790        163 GTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGT  242 (409)
T ss_pred             HHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCc
Confidence            999999999999999999987543  223344689999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHhCCceEEEeecCCCCCCCC-----CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 020073          251 VIDENEMVRCLVRGEIAGAGLDVFENEPYVP-----KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLL  325 (331)
Q Consensus       251 ~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~-----~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~  325 (331)
                      +||++||++||++|+|+||+||||++||++.     +|||++|||++|||+||+|.++..++.+.+++|+.+|++|+++.
T Consensus       243 ~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~~  322 (409)
T PRK11790        243 VVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTL  322 (409)
T ss_pred             ccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence            9999999999999999999999999999764     48999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 020073          326 SPVT  329 (331)
Q Consensus       326 ~~v~  329 (331)
                      +.||
T Consensus       323 ~~vn  326 (409)
T PRK11790        323 SAVN  326 (409)
T ss_pred             ccee
Confidence            9998

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=1.4e-69  Score=524.43  Aligned_cols=316  Identities=25%  Similarity=0.363  Sum_probs=273.8

Q ss_pred             ccCCCCeEEEECCCCCCch-HHHHHHhcc-CcEEEeccCC-ccHHHHHHhhc-CCeeEEEEeCCCCCCHHHHhcCCC--c
Q 020073           11 QSQHLPRVLVIKPPPPLTL-FGDKFISRS-FQLLKAYESS-LSLEQFLISHA-HSIEAILCSGDSPVTLDILRLLPK--L   84 (331)
Q Consensus        11 ~~~~k~~vl~~~~~~~~~~-~~~~~l~~~-~~~~~~~~~~-~~~~~~l~~~~-~~~d~ii~~~~~~i~~~~l~~~p~--L   84 (331)
                      .-+.|++|+++.+.  +++ ..+. |.+. +++....... ...++.+.+.+ .++|++++....++++++++++|+  |
T Consensus        11 ~~~~~~~v~~~~~~--~~~~~~~~-L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~l   87 (386)
T PLN02306         11 NPNGKYRVVSTKPM--PGTRWINL-LVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGG   87 (386)
T ss_pred             CCCCCceEEEeCCC--CcHHHHHH-HHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCc
Confidence            34678999999876  443 5666 7654 6654322111 11233444554 569999887667899999999996  6


Q ss_pred             eEEEEccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCC-CCCCCccCCCce
Q 020073           85 RLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIG-DYPLGSKLGGKR  163 (331)
Q Consensus        85 k~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~-~~~~~~~l~g~~  163 (331)
                      |+|+++|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.... ....|.+|+|+|
T Consensus        88 k~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gkt  167 (386)
T PLN02306         88 KAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQT  167 (386)
T ss_pred             eEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCE
Confidence            9999999999999999999999999999999999999999999999999999999999999985321 112477899999


Q ss_pred             EEEEecChHHHHHHHHHh-hCCCEEEEECCCCCC--C------C------------ccccCCHHhhhcCCCEEEEeccCC
Q 020073          164 VGIVGLGNIGLQVAKRLQ-AFGCNVLYNSRSKKP--V------P------------YAFYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       164 vgIiG~G~IG~~~A~~l~-~~G~~V~~~~~~~~~--~------~------------~~~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      +||||+|.||+.+|++++ +|||+|++||++...  .      +            .....+|++++++||+|++|+|+|
T Consensus       168 vGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt  247 (386)
T PLN02306        168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLD  247 (386)
T ss_pred             EEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCC
Confidence            999999999999999985 999999999987642  0      0            012358999999999999999999


Q ss_pred             hhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHH
Q 020073          223 DQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSE  302 (331)
Q Consensus       223 ~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~  302 (331)
                      ++|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++++||++|||++|||+||+|.+
T Consensus       248 ~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPHiag~T~e  327 (386)
T PLN02306        248 KTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKW  327 (386)
T ss_pred             hhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCccccCcHH
Confidence            99999999999999999999999999999999999999999999999999999999876789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 020073          303 CFVDLCELAVGNLEALFSNQPLLSPVT  329 (331)
Q Consensus       303 ~~~~~~~~~~~nl~~~~~g~~~~~~v~  329 (331)
                      +++++.+.+++|+.+|++|+++.|.||
T Consensus       328 ~~~~~~~~~~~ni~~~~~g~~~~~~~~  354 (386)
T PLN02306        328 TREGMATLAALNVLGKLKGYPVWGDPN  354 (386)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCccccc
Confidence            999999999999999999999999998

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=4.5e-69  Score=510.02  Aligned_cols=268  Identities=26%  Similarity=0.447  Sum_probs=243.8

Q ss_pred             HHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhc
Q 020073           55 LISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRK  134 (331)
Q Consensus        55 l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~  134 (331)
                      +.+.+.++|++++ +..++++++++++|+||||+++|+|+|+||+++|+++||.|+|+||+++.+||||++++||+++|+
T Consensus        38 ~~~~~~~~d~ii~-~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~  116 (314)
T PRK06932         38 TIERAKDADIVIT-SKVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHS  116 (314)
T ss_pred             HHHHhCCCcEEEE-eCCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhC
Confidence            3455679998876 456799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHcCCcccCCCC----CCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhc
Q 020073          135 ISSADRFLRQGLWSKIGDY----PLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAA  210 (331)
Q Consensus       135 ~~~~~~~~~~g~w~~~~~~----~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~  210 (331)
                      +..+++.+++|.|.....+    ..+.+|+|||+||||+|.||+++|+++++|||+|++|+++........+.+|+++++
T Consensus       117 ~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~  196 (314)
T PRK06932        117 LMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLK  196 (314)
T ss_pred             hHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHH
Confidence            9999999999999753211    124689999999999999999999999999999999998643211112468999999


Q ss_pred             CCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCC-Cccc----
Q 020073          211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP-KELL----  285 (331)
Q Consensus       211 ~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~-~~L~----  285 (331)
                      +||+|++|||+|++|+|+||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++. +|||    
T Consensus       197 ~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~  276 (314)
T PRK06932        197 QADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAK  276 (314)
T ss_pred             hCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999865 4898    


Q ss_pred             cCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 020073          286 ELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQP  323 (331)
Q Consensus       286 ~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  323 (331)
                      ++|||++|||+||+|.++..++.+.+++||.+|++|++
T Consensus       277 ~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~  314 (314)
T PRK06932        277 RLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK  314 (314)
T ss_pred             CCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence            59999999999999999999999999999999999864

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=5.9e-69  Score=515.42  Aligned_cols=306  Identities=24%  Similarity=0.438  Sum_probs=265.0

Q ss_pred             ccCCCCeEEEECCCCCCch---HHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEE
Q 020073           11 QSQHLPRVLVIKPPPPLTL---FGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLV   87 (331)
Q Consensus        11 ~~~~k~~vl~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I   87 (331)
                      -+++||+||++.+.  .+.   +..+++ +.+++..+...  +.++ +.+.+.++|+++++ ..++++++++.+|+||||
T Consensus        14 ~~~~~~~vl~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~--~~~e-~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I   86 (347)
T PLN02928         14 SDMRPTRVLFCGPE--FPASYSYTREYL-QKYPFIQVDAV--ARED-VPDVIANYDICVPK-MMRLDADIIARASQMKLI   86 (347)
T ss_pred             CCCCCCEEEEECCC--chhHHHHHHHHh-hcCCeeEecCC--CHHH-HHHHhcCCcEEEEC-CCCCCHHHHhcCCCceEE
Confidence            45678899999866  333   222313 34444332221  2223 45556799988774 558999999999999999


Q ss_pred             EEccCCCCCCChhHHhhCCcEEEeCCCC---ChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceE
Q 020073           88 VTASAGVNHIHMPECRRRGIAVANAGSI---FSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRV  164 (331)
Q Consensus        88 ~~~~~G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~v  164 (331)
                      ++.|+|+|++|++++.++||.|+|+|++   ++.+||||+++++|+++|++..+++.+++|.|..    +.+.+|+|+|+
T Consensus        87 ~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~----~~~~~l~gktv  162 (347)
T PLN02928         87 MQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE----PIGDTLFGKTV  162 (347)
T ss_pred             EECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc----ccccCCCCCEE
Confidence            9999999999999999999999999985   7899999999999999999999999999999964    24678999999


Q ss_pred             EEEecChHHHHHHHHHhhCCCEEEEECCCCCC--CC---------------ccccCCHHhhhcCCCEEEEeccCChhhhh
Q 020073          165 GIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--VP---------------YAFYSNVCELAANSDALIICCALTDQTRR  227 (331)
Q Consensus       165 gIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--~~---------------~~~~~~l~ell~~aDiV~l~~P~t~~t~~  227 (331)
                      ||||+|.||+.+|+++++|||+|++|+|+..+  ..               .....+|++++++||+|++|+|+|++|++
T Consensus       163 GIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~  242 (347)
T PLN02928        163 FILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAG  242 (347)
T ss_pred             EEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhc
Confidence            99999999999999999999999999987432  10               11346899999999999999999999999


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCC-CccccCCceEEcCCCCCCcHHHHHH
Q 020073          228 MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP-KELLELDNVVLQPHRAVFTSECFVD  306 (331)
Q Consensus       228 li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~-~~L~~~~nvilTPH~a~~t~~~~~~  306 (331)
                      +|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++ +|||++|||++|||+||+|.+++.+
T Consensus       243 li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~  322 (347)
T PLN02928        243 IVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRS  322 (347)
T ss_pred             ccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHH
Confidence            999999999999999999999999999999999999999999999999999865 4999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCC
Q 020073          307 LCELAVGNLEALFSNQPLLSP  327 (331)
Q Consensus       307 ~~~~~~~nl~~~~~g~~~~~~  327 (331)
                      +.+.+++|+.+|++|+++.|.
T Consensus       323 ~~~~~~~nl~~~~~g~~~~~~  343 (347)
T PLN02928        323 MGKIVGDAALQLHAGRPLTGI  343 (347)
T ss_pred             HHHHHHHHHHHHHCCCCCCce
Confidence            999999999999999988764

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=2.4e-68  Score=514.52  Aligned_cols=289  Identities=25%  Similarity=0.369  Sum_probs=256.9

Q ss_pred             Hhcc-CcEEEeccCCccHHHHHHhhcCCeeEEEEeC--CCCCCHHHHhcCCCceEEEEccCCCCCCChhHHhhCCcEEEe
Q 020073           35 ISRS-FQLLKAYESSLSLEQFLISHAHSIEAILCSG--DSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVAN  111 (331)
Q Consensus        35 l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~--~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n  111 (331)
                      |++. ++++...+.+.+ ++.+.+.+.++|++++..  ..+++++.++++|+||||+++|+|+|+||+++|+++||.|+|
T Consensus        71 l~~~g~~~v~~~~~~~~-~~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n  149 (386)
T PLN03139         71 LESQGHQYIVTDDKEGP-DCELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAE  149 (386)
T ss_pred             HHhcCCeEEEeCCCCCC-HHHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEE
Confidence            5555 455443332222 334456678999998753  357999999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEEC
Q 020073          112 AGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNS  191 (331)
Q Consensus       112 ~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~  191 (331)
                      ++|+++.+||||++++||++.|++..+++.+++|.|........+.+|.|++|||||+|+||+.+|++|++|||+|++||
T Consensus       150 ~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d  229 (386)
T PLN03139        150 VTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHD  229 (386)
T ss_pred             CCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEEC
Confidence            99999999999999999999999999999999999975322234678999999999999999999999999999999999


Q ss_pred             CCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073          192 RSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGE  265 (331)
Q Consensus       192 ~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~  265 (331)
                      ++..+      .+.....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||++||++|+
T Consensus       230 ~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~  309 (386)
T PLN03139        230 RLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGH  309 (386)
T ss_pred             CCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCC
Confidence            87533      223344689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeecCCCCCCCC-CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 020073          266 IAGAGLDVFENEPYVP-KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPL  324 (331)
Q Consensus       266 i~ga~lDV~~~EP~~~-~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~  324 (331)
                      |+||+||||++||++. +|||.+|||++|||+||.|.+++.++.+.+++||.+|++|+++
T Consensus       310 l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~  369 (386)
T PLN03139        310 IGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDF  369 (386)
T ss_pred             ceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999875 4999999999999999999999999999999999999999864

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=2.3e-68  Score=514.94  Aligned_cols=293  Identities=23%  Similarity=0.378  Sum_probs=261.0

Q ss_pred             Hhcc-CcEEEeccCCccHHHHHHhhcCCeeEEEEeC--CCCCCHHHHhcCCCceEEEEccCCCCCCChhHHhhCCcEEEe
Q 020073           35 ISRS-FQLLKAYESSLSLEQFLISHAHSIEAILCSG--DSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVAN  111 (331)
Q Consensus        35 l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~--~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n  111 (331)
                      |++. ++++...+.+.+ ++.+.+.+.++|++++..  ..++++++++++|+||||+++|+|+|+||+++|+++||.|+|
T Consensus        64 l~~~g~e~~~~~~~~~~-~~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n  142 (385)
T PRK07574         64 LEERGHELVVTSDKDGP-DSDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAE  142 (385)
T ss_pred             HHhcCcEEEEeCCCCCC-HHHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEEc
Confidence            6555 555443222222 334456678999998753  467999999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEEC
Q 020073          112 AGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNS  191 (331)
Q Consensus       112 ~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~  191 (331)
                      ++++++.+||||++++||+++|++..+++.+++|.|........+.+|+|++|||||+|+||+.+|++|++|||+|++||
T Consensus       143 ~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~d  222 (385)
T PRK07574        143 VTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTD  222 (385)
T ss_pred             CCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEC
Confidence            99999999999999999999999999999999999975422224678999999999999999999999999999999999


Q ss_pred             CCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073          192 RSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGE  265 (331)
Q Consensus       192 ~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~  265 (331)
                      |+..+      .+.....++++++++||+|++|||+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+
T Consensus       223 r~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~  302 (385)
T PRK07574        223 RHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGH  302 (385)
T ss_pred             CCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCC
Confidence            98632      233345789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeecCCCCCCCCC-ccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 020073          266 IAGAGLDVFENEPYVPK-ELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPV  328 (331)
Q Consensus       266 i~ga~lDV~~~EP~~~~-~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v  328 (331)
                      |+||+||||++||++.+ |||++|||++|||+||+|.+++.++.+.+++||++|++|+++.|+.
T Consensus       303 i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~~  366 (385)
T PRK07574        303 LAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDEY  366 (385)
T ss_pred             ccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCCc
Confidence            99999999999998754 9999999999999999999999999999999999999999998864

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=1.4e-67  Score=530.87  Aligned_cols=306  Identities=31%  Similarity=0.460  Sum_probs=272.7

Q ss_pred             eEEEECCCCCCchHHHHHHhcc-CcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCC
Q 020073           17 RVLVIKPPPPLTLFGDKFISRS-FQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVN   95 (331)
Q Consensus        17 ~vl~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d   95 (331)
                      ||+++.+.  .+...+. |++. +++.. . ...+. +.+.+.++++|++++++.+++++++++++|+||||+++|+|+|
T Consensus         1 ~vli~~~~--~~~~~~~-l~~~~~~~~~-~-~~~~~-~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   74 (525)
T TIGR01327         1 KVLIADPI--SPDGIDI-LEDVGVEVDV-Q-TGLSR-EELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVD   74 (525)
T ss_pred             CEEEeCCC--CHHHHHH-HHhcCcEEEe-C-CCCCH-HHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccc
Confidence            47777765  5666666 7654 45442 2 12222 3345566899999987777899999999999999999999999


Q ss_pred             CCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHH
Q 020073           96 HIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQ  175 (331)
Q Consensus        96 ~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~  175 (331)
                      +||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|+|.+.  ...|.+|+|||+||||+|+||+.
T Consensus        75 ~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~--~~~g~~l~gktvgIiG~G~IG~~  152 (525)
T TIGR01327        75 NIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK--AFMGTELYGKTLGVIGLGRIGSI  152 (525)
T ss_pred             hhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccc--ccCccccCCCEEEEECCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999753  22578999999999999999999


Q ss_pred             HHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073          176 VAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       176 ~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                      +|++|++|||+|++||++...     .+.....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+
T Consensus       153 vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~  232 (525)
T TIGR01327       153 VAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGG  232 (525)
T ss_pred             HHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCc
Confidence            999999999999999986432     233334589999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 020073          251 VIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPVTA  330 (331)
Q Consensus       251 ~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~~  330 (331)
                      +||++||++||++|+|+||+||||++||++++|||++|||++|||+||+|.+++.++...+++|+.+|++|+++.|.||.
T Consensus       233 ~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~  312 (525)
T TIGR01327       233 IIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVNA  312 (525)
T ss_pred             eeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceeeC
Confidence            99999999999999999999999999997767999999999999999999999999999999999999999999999985

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=9.2e-67  Score=525.12  Aligned_cols=305  Identities=30%  Similarity=0.457  Sum_probs=272.3

Q ss_pred             eEEEECCCCCCchHHHHHHhcc--CcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCC
Q 020073           17 RVLVIKPPPPLTLFGDKFISRS--FQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGV   94 (331)
Q Consensus        17 ~vl~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~   94 (331)
                      +|+++.+.  .+...+. |++.  +++.. . ...+.+ .+.+.+.++|++++++.+++++++++++|+||||+++|+|+
T Consensus         2 ~ili~~~~--~~~~~~~-l~~~~~~~v~~-~-~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   75 (526)
T PRK13581          2 KVLVSDPI--SPAGLEI-LKDAPGVEVDV-K-TGLDKE-ELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGV   75 (526)
T ss_pred             eEEEeCCC--CHHHHHH-HhccCCeEEEe-C-CCCCHH-HHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCccc
Confidence            58888765  5666666 7765  34332 2 122223 34556689999998777789999999999999999999999


Q ss_pred             CCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHH
Q 020073           95 NHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGL  174 (331)
Q Consensus        95 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~  174 (331)
                      |+||+++|+++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|.+.  ...+.+|.|||+||||+|+||+
T Consensus        76 d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~--~~~g~~l~gktvgIiG~G~IG~  153 (526)
T PRK13581         76 DNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERK--KFMGVELYGKTLGIIGLGRIGS  153 (526)
T ss_pred             ccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCcc--CccccccCCCEEEEECCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999753  2247789999999999999999


Q ss_pred             HHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 020073          175 QVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       175 ~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg  249 (331)
                      .+|+++++|||+|++||++...     .+... .++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||
T Consensus       154 ~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~-~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG  232 (526)
T PRK13581        154 EVAKRAKAFGMKVIAYDPYISPERAAQLGVEL-VSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARG  232 (526)
T ss_pred             HHHHHHHhCCCEEEEECCCCChhHHHhcCCEE-EcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCC
Confidence            9999999999999999986432     23333 38999999999999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 020073          250 AVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPVT  329 (331)
Q Consensus       250 ~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  329 (331)
                      ++||++||++||++|+|+||+||||++||++++|||++|||++|||+||+|.+++.++.+.+++|+.+|++|+++.|.||
T Consensus       233 ~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn  312 (526)
T PRK13581        233 GIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAVN  312 (526)
T ss_pred             ceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCceee
Confidence            99999999999999999999999999999876799999999999999999999999999999999999999999999998


Q ss_pred             C
Q 020073          330 A  330 (331)
Q Consensus       330 ~  330 (331)
                      .
T Consensus       313 ~  313 (526)
T PRK13581        313 L  313 (526)
T ss_pred             C
Confidence            5

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=3.1e-66  Score=476.01  Aligned_cols=304  Identities=28%  Similarity=0.415  Sum_probs=272.7

Q ss_pred             eEEEECCCCCCchHHHHHHhccC-cEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHh-cCCCceEEEEccCCC
Q 020073           17 RVLVIKPPPPLTLFGDKFISRSF-QLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILR-LLPKLRLVVTASAGV   94 (331)
Q Consensus        17 ~vl~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~-~~p~Lk~I~~~~~G~   94 (331)
                      +||+.++.  .+...+. |++.+ ++......  +.+ ++...++++|++++++.+++++++|+ ...+||+|.+.++|+
T Consensus         8 ~il~~e~~--~~~~~~~-l~~~g~~v~~~~~~--~~e-el~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~   81 (406)
T KOG0068|consen    8 KILVAESL--DQACIEI-LKDNGYQVEFKKNL--SLE-ELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGV   81 (406)
T ss_pred             eEEEeccc--chHHHHH-HHhcCceEEEeccC--CHH-HHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCc
Confidence            79999976  7777877 88887 44433222  234 45566789999999999999999999 556899999999999


Q ss_pred             CCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHH
Q 020073           95 NHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGL  174 (331)
Q Consensus        95 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~  174 (331)
                      ||+|++++.++||.|.|+|.+|+.++||+++++++++.|++++....+|+|+|.+..  ..|.+|+|||+||+|+|+||+
T Consensus        82 dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~--~~G~el~GKTLgvlG~GrIGs  159 (406)
T KOG0068|consen   82 DNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVK--YLGWELRGKTLGVLGLGRIGS  159 (406)
T ss_pred             cccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecc--eeeeEEeccEEEEeecccchH
Confidence            999999999999999999999999999999999999999999999999999998752  368999999999999999999


Q ss_pred             HHHHHHhhCCCEEEEECCCCCC----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073          175 QVAKRLQAFGCNVLYNSRSKKP----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       175 ~~A~~l~~~G~~V~~~~~~~~~----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                      .+|++++++||+|++||+-...    .-.....+++|+++.||||++|+|++|+|++|+|++.|++||+|..+||+|||+
T Consensus       160 eVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGG  239 (406)
T KOG0068|consen  160 EVAVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGG  239 (406)
T ss_pred             HHHHHHHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCc
Confidence            9999999999999999886543    112245799999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHhCCceEEEeecCCCCCCC---CCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 020073          251 VIDENEMVRCLVRGEIAGAGLDVFENEPYV---PKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSP  327 (331)
Q Consensus       251 ~vd~~al~~aL~~~~i~ga~lDV~~~EP~~---~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~  327 (331)
                      +||+.||++||++|+++||++|||+.||..   +..|.++|||++|||+|++|.|++.+++..+++++..|.+| .....
T Consensus       240 vVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~-~~~g~  318 (406)
T KOG0068|consen  240 VVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING-NSAGS  318 (406)
T ss_pred             eechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhcc-Cccce
Confidence            999999999999999999999999999976   34799999999999999999999999999999999999999 45444


Q ss_pred             CC
Q 020073          328 VT  329 (331)
Q Consensus       328 v~  329 (331)
                      ||
T Consensus       319 Vn  320 (406)
T KOG0068|consen  319 VN  320 (406)
T ss_pred             ec
Confidence            54

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=2.3e-65  Score=487.50  Aligned_cols=309  Identities=17%  Similarity=0.300  Sum_probs=265.5

Q ss_pred             eEEEECCCCCCchHHHHHHhccCcEE-EeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCC--CceEEEEccCC
Q 020073           17 RVLVIKPPPPLTLFGDKFISRSFQLL-KAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLP--KLRLVVTASAG   93 (331)
Q Consensus        17 ~vl~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p--~Lk~I~~~~~G   93 (331)
                      ||++.+.-++...+..+.+++. ++. .....+.+ ++ +.+.+.++|++++....++++++++++|  +||+|++.|+|
T Consensus         3 ~i~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G   79 (330)
T PRK12480          3 KIMFFGTRDYEKEMALNWGKKN-NVEVTTSKELLS-SA-TVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAG   79 (330)
T ss_pred             EEEEEeCcHHHHHHHHHHHHhc-CeEEEEcCCCCC-HH-HHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecccc
Confidence            6888875432333444414433 432 21222222 23 3556689999998766789999999998  89999999999


Q ss_pred             CCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHH
Q 020073           94 VNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIG  173 (331)
Q Consensus        94 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG  173 (331)
                      +|+||+++|+++||.|+|+|++++++||||+++++|+++|++..+++.+++|.|.... ...+++|+|++|||||+|.||
T Consensus        80 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~-~~~~~~l~g~~VgIIG~G~IG  158 (330)
T PRK12480         80 FDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQA-EIMSKPVKNMTVAIIGTGRIG  158 (330)
T ss_pred             cchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCccccc-ccCccccCCCEEEEECCCHHH
Confidence            9999999999999999999999999999999999999999999999999999764221 124678999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEECCCCCC-CC-ccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCc
Q 020073          174 LQVAKRLQAFGCNVLYNSRSKKP-VP-YAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAV  251 (331)
Q Consensus       174 ~~~A~~l~~~G~~V~~~~~~~~~-~~-~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~  251 (331)
                      +.+|++|++|||+|++|+++... .. .....++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||.+
T Consensus       159 ~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~  238 (330)
T PRK12480        159 AATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAV  238 (330)
T ss_pred             HHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccc
Confidence            99999999999999999988654 22 22345899999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHhCCceEEEeecCCCCCCC----------C----CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHH
Q 020073          252 IDENEMVRCLVRGEIAGAGLDVFENEPYV----------P----KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEA  317 (331)
Q Consensus       252 vd~~al~~aL~~~~i~ga~lDV~~~EP~~----------~----~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~  317 (331)
                      ||++||++||++|+|+||+||||++||+.          +    +|||++|||++|||+|++|.+++.++.+.+++|+.+
T Consensus       239 vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~  318 (330)
T PRK12480        239 INTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALS  318 (330)
T ss_pred             cCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999952          1    269999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCCC
Q 020073          318 LFSNQPLLSPVT  329 (331)
Q Consensus       318 ~~~g~~~~~~v~  329 (331)
                      |++|+.+.++||
T Consensus       319 ~~~~~~~~~~~~  330 (330)
T PRK12480        319 VINTGTCETRLN  330 (330)
T ss_pred             HHhCCCCcccCC
Confidence            999999999987

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=8.2e-65  Score=484.68  Aligned_cols=310  Identities=18%  Similarity=0.297  Sum_probs=269.6

Q ss_pred             CCCeEEEECCCCCCchHHHHHHhccCcEEE-eccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCC--ceEEEEc
Q 020073           14 HLPRVLVIKPPPPLTLFGDKFISRSFQLLK-AYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPK--LRLVVTA   90 (331)
Q Consensus        14 ~k~~vl~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~--Lk~I~~~   90 (331)
                      +|++++++.+.  ...+.+. +.+.+++.. .+....+ ++. .+.+.++|+++++..+++++++++++|+  ||+|+++
T Consensus         2 ~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~-~e~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~   76 (332)
T PRK08605          2 TKIKIMSVRDE--DAPYIKA-WAEKHHVEVDLTKEALT-DDN-VEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQR   76 (332)
T ss_pred             cEEEEEecCHH--HHHHHHH-HHHhcCeEEEEecCCCC-HHH-HHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEc
Confidence            56778888865  5567777 655565432 2222222 233 3556799999887778999999999997  9999999


Q ss_pred             cCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecC
Q 020073           91 SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLG  170 (331)
Q Consensus        91 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G  170 (331)
                      |+|+|+||+++|+++||.|+|+|++++.+||||+++++|+++|++...++.+++|.|.... ...+++|+|++|||||+|
T Consensus        77 ~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~VgIIG~G  155 (332)
T PRK08605         77 SAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEP-PILSRSIKDLKVAVIGTG  155 (332)
T ss_pred             ccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCccccc-ccccceeCCCEEEEECCC
Confidence            9999999999999999999999999999999999999999999999999999999874221 124789999999999999


Q ss_pred             hHHHHHHHHH-hhCCCEEEEECCCCCC---CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEc
Q 020073          171 NIGLQVAKRL-QAFGCNVLYNSRSKKP---VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNV  246 (331)
Q Consensus       171 ~IG~~~A~~l-~~~G~~V~~~~~~~~~---~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~  246 (331)
                      .||+++|++| ++||++|+++|++...   .......++++++++||+|++|+|++++|+++++++.+++||+|++|||+
T Consensus       156 ~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~  235 (332)
T PRK08605        156 RIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNC  235 (332)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEEC
Confidence            9999999999 7899999999987654   12223458999999999999999999999999999999999999999999


Q ss_pred             CCCCccCHHHHHHHHHhCCceEEEeecCCCCCC--CCC------------ccccCCceEEcCCCCCCcHHHHHHHHHHHH
Q 020073          247 GRGAVIDENEMVRCLVRGEIAGAGLDVFENEPY--VPK------------ELLELDNVVLQPHRAVFTSECFVDLCELAV  312 (331)
Q Consensus       247 srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~--~~~------------~L~~~~nvilTPH~a~~t~~~~~~~~~~~~  312 (331)
                      |||.++|+++|+++|++|+|+||+||||+.||.  +.+            +||++|||++|||+||+|.++..++...++
T Consensus       236 sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~  315 (332)
T PRK08605        236 ARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDAL  315 (332)
T ss_pred             CCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999983  221            499999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCC
Q 020073          313 GNLEALFSNQPLLSPVT  329 (331)
Q Consensus       313 ~nl~~~~~g~~~~~~v~  329 (331)
                      +|+.+|++|++..|.||
T Consensus       316 ~n~~~~~~g~~~~~~~~  332 (332)
T PRK08605        316 DATLEVLQTGTTRLRVN  332 (332)
T ss_pred             HHHHHHHcCCCCCCCcC
Confidence            99999999999999986

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=1.2e-63  Score=468.29  Aligned_cols=267  Identities=45%  Similarity=0.764  Sum_probs=246.3

Q ss_pred             eEEEEeCCCCCCHHHHhcC-CCceEEEEccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHH
Q 020073           63 EAILCSGDSPVTLDILRLL-PKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRF  141 (331)
Q Consensus        63 d~ii~~~~~~i~~~~l~~~-p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~  141 (331)
                      .++.+......+.+.+.+. |+||+|+++|+|+||||+++|++|||+|+|+|+.+.++|||++++++|.++|++...+++
T Consensus        63 ~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~  142 (336)
T KOG0069|consen   63 IAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEM  142 (336)
T ss_pred             eeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            3444444456777777765 899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--CCc---cccCCHHhhhcCCCEEE
Q 020073          142 LRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--VPY---AFYSNVCELAANSDALI  216 (331)
Q Consensus       142 ~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--~~~---~~~~~l~ell~~aDiV~  216 (331)
                      +++|+|.....++.|.++.||||||+|+|+||+.+|++|++||+.+.|++|++.+  ...   ....++++++++||+|+
T Consensus       143 ~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~iv  222 (336)
T KOG0069|consen  143 VRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIV  222 (336)
T ss_pred             hhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEE
Confidence            9999995555567889999999999999999999999999999999999998765  111   22459999999999999


Q ss_pred             EeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCC
Q 020073          217 ICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHR  296 (331)
Q Consensus       217 l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~  296 (331)
                      +|||+|++|+|+||++.|++||+|+++||++||+++|++++++||++|+|+||+||||++||.++++|++++||++|||+
T Consensus       223 v~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHi  302 (336)
T KOG0069|consen  223 VNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHI  302 (336)
T ss_pred             EecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999666799999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 020073          297 AVFTSECFVDLCELAVGNLEALFSNQPLLSPVT  329 (331)
Q Consensus       297 a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  329 (331)
                      |++|.+++.+|+..++.|+.+++.|+++.++++
T Consensus       303 gs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~~  335 (336)
T KOG0069|consen  303 GSATLETREKMAEIVLNNLLAFFSGKPLLTPVL  335 (336)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHccCCCCCcCC
Confidence            999999999999999999999999999988876

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=4.8e-62  Score=461.17  Aligned_cols=262  Identities=22%  Similarity=0.332  Sum_probs=234.1

Q ss_pred             CCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCCCCChhH-----HhhCCcEEEeCCC-CChHHHHHHHHHHHHHHHh
Q 020073           60 HSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPE-----CRRRGIAVANAGS-IFSDDAADAAVGLLIDVWR  133 (331)
Q Consensus        60 ~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~-----~~~~gI~v~n~~~-~~~~~vAE~al~l~L~~~r  133 (331)
                      .++|+++++.   .+.+.++ .|+||||++.|+|+|++|.+.     +..+||.|+|+++ .++.+||||+++++|++.|
T Consensus        37 ~~a~~~~~~~---~~~~~l~-~~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r  112 (312)
T PRK15469         37 DPADYALVWH---PPVEMLA-GRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFR  112 (312)
T ss_pred             ccCeEEEEeC---CChHHhc-cCCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHc
Confidence            5789888864   2567776 589999999999999998322     3458999999864 6899999999999999999


Q ss_pred             chHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-CC---ccccCCHHhhh
Q 020073          134 KISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-VP---YAFYSNVCELA  209 (331)
Q Consensus       134 ~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~~---~~~~~~l~ell  209 (331)
                      ++..+.+.+++|.|...    .+.+++|+||||||+|.||+.+|++|++|||+|++|+++.+. .+   .....++++++
T Consensus       113 ~~~~~~~~~~~~~w~~~----~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l  188 (312)
T PRK15469        113 RFDDYQALQNSSHWQPL----PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFL  188 (312)
T ss_pred             ChHHHHHHHHhCCcCCC----CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHH
Confidence            99999999999999643    245799999999999999999999999999999999987654 12   12245899999


Q ss_pred             cCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCC-ccccCC
Q 020073          210 ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPK-ELLELD  288 (331)
Q Consensus       210 ~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~-~L~~~~  288 (331)
                      ++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++.+ |||++|
T Consensus       189 ~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~  268 (312)
T PRK15469        189 SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHP  268 (312)
T ss_pred             hcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998764 899999


Q ss_pred             ceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 020073          289 NVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPVTAE  331 (331)
Q Consensus       289 nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~~~  331 (331)
                      ||++|||+||+|.+.  ++.+.+++|+++|++|+++.|.||++
T Consensus       269 nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~~~~~~V~~~  309 (312)
T PRK15469        269 RVAITPHVAAVTRPA--EAVEYISRTIAQLEKGERVCGQVDRA  309 (312)
T ss_pred             CeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCCCCcccCCcc
Confidence            999999999999874  68899999999999999999999974

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=3.8e-61  Score=452.81  Aligned_cols=257  Identities=31%  Similarity=0.407  Sum_probs=230.4

Q ss_pred             CCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHH
Q 020073           60 HSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSAD  139 (331)
Q Consensus        60 ~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~  139 (331)
                      .++|++++...       +..+|+||||++.|+|+|+||+++|+++||.++|. |.++.+||||+++++|+++|++..++
T Consensus        33 ~~a~~~~~~~~-------~~~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~  104 (303)
T PRK06436         33 YDAEAILIKGR-------YVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENN  104 (303)
T ss_pred             CCCCEEEecCC-------cCCCCCeEEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHH
Confidence            46787765432       23468999999999999999999999988888775 78999999999999999999999999


Q ss_pred             HHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCCCcc-ccCCHHhhhcCCCEEEEe
Q 020073          140 RFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYA-FYSNVCELAANSDALIIC  218 (331)
Q Consensus       140 ~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~  218 (331)
                      +.+++|.|...    .+++|+|+|+||||+|+||+++|+++++|||+|++|+|+..+.+.. .+.++++++++||+|++|
T Consensus       105 ~~~~~g~w~~~----~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~  180 (303)
T PRK06436        105 YNMKNGNFKQS----PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLIS  180 (303)
T ss_pred             HHHHcCCCCCC----CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHHHhhCCEEEEC
Confidence            99999999753    3568999999999999999999999999999999999976543322 256899999999999999


Q ss_pred             ccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCC-
Q 020073          219 CALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRA-  297 (331)
Q Consensus       219 ~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a-  297 (331)
                      +|+|++|+++|+++.|++||+|++|||+|||+++|++||+++|++|++.||+||||++||++++.  .+|||++|||++ 
T Consensus       181 lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~--~~~nviiTPHi~g  258 (303)
T PRK06436        181 LPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET--NPDNVILSPHVAG  258 (303)
T ss_pred             CCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC--CCCCEEECCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999975543  789999999986 


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 020073          298 VFTSECFVDLCELAVGNLEALFSNQPLLSPVTAE  331 (331)
Q Consensus       298 ~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~~~  331 (331)
                      ++|.++..++.+.+++|+.+|++|++ .|.||++
T Consensus       259 ~~t~e~~~~~~~~~~~ni~~~~~g~~-~~~V~~~  291 (303)
T PRK06436        259 GMSGEIMQPAVALAFENIKNFFEGKP-KNIVRKE  291 (303)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHcCCC-CceEchH
Confidence            58899999999999999999999986 6888864

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=1.5e-60  Score=458.75  Aligned_cols=275  Identities=23%  Similarity=0.323  Sum_probs=238.5

Q ss_pred             eEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCCC
Q 020073           17 RVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNH   96 (331)
Q Consensus        17 ~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~   96 (331)
                      ||++....   +...+. +.+.+++......+.+.+     .+.++|++++++.+++++++++ .|+||+|+++++|+||
T Consensus         2 kIl~d~~~---~~~~~~-~~~~~ev~~~~~~~~~~~-----~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~   71 (378)
T PRK15438          2 KILVDENM---PYAREL-FSRLGEVKAVPGRPIPVA-----QLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDH   71 (378)
T ss_pred             EEEEeCCc---chHHHH-HhhcCcEEEeCCCCCCHH-----HhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccc
Confidence            57777755   333444 665667654332222222     2478999999887899999986 6999999999999999


Q ss_pred             CChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHH
Q 020073           97 IHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQV  176 (331)
Q Consensus        97 id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~  176 (331)
                      ||+++++++||.|+|+||+++.+||||+++++|++.|+                    .+.+|+|+||||||+|+||+.+
T Consensus        72 iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~--------------------~g~~L~gktvGIIG~G~IG~~v  131 (378)
T PRK15438         72 VDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAER--------------------DGFSLHDRTVGIVGVGNVGRRL  131 (378)
T ss_pred             cCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhcc--------------------CCCCcCCCEEEEECcCHHHHHH
Confidence            99999999999999999999999999999999999885                    1346899999999999999999


Q ss_pred             HHHHhhCCCEEEEECCCCCCCC-ccccCCHHhhhcCCCEEEEeccCChh----hhhhccHHHHhcCCCCcEEEEcCCCCc
Q 020073          177 AKRLQAFGCNVLYNSRSKKPVP-YAFYSNVCELAANSDALIICCALTDQ----TRRMINREVMLALGKEGIIVNVGRGAV  251 (331)
Q Consensus       177 A~~l~~~G~~V~~~~~~~~~~~-~~~~~~l~ell~~aDiV~l~~P~t~~----t~~li~~~~l~~mk~ga~lIn~srg~~  251 (331)
                      |+++++|||+|++||+.....+ ...+.+|++++++||+|++|+|+|++    |+||+|++.|++||+|++|||+|||++
T Consensus       132 A~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~v  211 (378)
T PRK15438        132 QARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAV  211 (378)
T ss_pred             HHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchh
Confidence            9999999999999997644322 12356899999999999999999996    999999999999999999999999999


Q ss_pred             cCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 020073          252 IDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQP  323 (331)
Q Consensus       252 vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  323 (331)
                      ||++||+++|++|++.||+||||++||.++++||..++ ++|||+||+|.+...++...+++|+.+|+ |.+
T Consensus       212 VDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~-~~~  281 (378)
T PRK15438        212 VDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFI-GHE  281 (378)
T ss_pred             cCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHH-cCc
Confidence            99999999999999999999999999976678988776 99999999999999999999999999999 443

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=6.1e-60  Score=455.82  Aligned_cols=277  Identities=21%  Similarity=0.325  Sum_probs=240.0

Q ss_pred             eEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCCC
Q 020073           17 RVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNH   96 (331)
Q Consensus        17 ~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~   96 (331)
                      ||++-+.++   ...+. +++..++.........     .+.+.++|++++++.+++++++++. |+||||+++++|+||
T Consensus         2 kI~~d~~~p---~~~~~-~~~~~~v~~~~~~~~~-----~~~l~daD~liv~~~t~v~~~ll~~-~~Lk~I~~~~~G~D~   71 (381)
T PRK00257          2 KIVADENIP---LLDAF-FAGFGEIRRLPGRAFD-----RAAVRDADVLLVRSVTRVDRALLEG-SRVRFVGTCTIGTDH   71 (381)
T ss_pred             EEEEecCch---hHHHH-HhhCCcEEEcCCcccC-----HHHhCCceEEEEeCCCCCCHHHhcC-CCCeEEEECCccccc
Confidence            577777763   22223 5544555432211111     2234789999988888999999984 899999999999999


Q ss_pred             CChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHH
Q 020073           97 IHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQV  176 (331)
Q Consensus        97 id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~  176 (331)
                      ||+++++++||.|+|+||+|+.+||||+++++|++.|+                    .+.+++|+||||||+|+||+.+
T Consensus        72 iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~--------------------~g~~l~gktvGIIG~G~IG~~v  131 (381)
T PRK00257         72 LDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER--------------------EGVDLAERTYGVVGAGHVGGRL  131 (381)
T ss_pred             cCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc--------------------cCCCcCcCEEEEECCCHHHHHH
Confidence            99999999999999999999999999999999998875                    1346899999999999999999


Q ss_pred             HHHHhhCCCEEEEECCCCCC-CCccccCCHHhhhcCCCEEEEeccCCh----hhhhhccHHHHhcCCCCcEEEEcCCCCc
Q 020073          177 AKRLQAFGCNVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTD----QTRRMINREVMLALGKEGIIVNVGRGAV  251 (331)
Q Consensus       177 A~~l~~~G~~V~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~~P~t~----~t~~li~~~~l~~mk~ga~lIn~srg~~  251 (331)
                      |+++++|||+|++||+.... .+...+.++++++++||+|++|+|+|+    +|+||||++.|++||+|++|||+|||++
T Consensus       132 a~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~v  211 (381)
T PRK00257        132 VRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAV  211 (381)
T ss_pred             HHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcc
Confidence            99999999999999986543 222345689999999999999999999    5999999999999999999999999999


Q ss_pred             cCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 020073          252 IDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPL  324 (331)
Q Consensus       252 vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~  324 (331)
                      ||++||+++|++|++.||+||||++||.++++||.. ||++|||+||+|.++..++...+++|+.+|+.+.+.
T Consensus       212 Vde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~~  283 (381)
T PRK00257        212 VDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPAR  283 (381)
T ss_pred             cCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            999999999999999999999999999766689986 999999999999999999999999999999998753

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=6.5e-49  Score=344.02  Aligned_cols=172  Identities=40%  Similarity=0.636  Sum_probs=151.3

Q ss_pred             HHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-C----Cc
Q 020073          125 VGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-V----PY  199 (331)
Q Consensus       125 l~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~----~~  199 (331)
                      ++++|++.|++..+++.+++|.|... ....+++++|+||||||+|+||+++|+++++|||+|++|+|+... .    ..
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W~~~-~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~   79 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEWASR-ERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG   79 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBHHHH-TTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCCCCC-cCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccccc
Confidence            58999999999999999999999211 123578999999999999999999999999999999999998865 1    12


Q ss_pred             cccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCC
Q 020073          200 AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPY  279 (331)
Q Consensus       200 ~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~  279 (331)
                      ....++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||+
T Consensus        80 ~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~  159 (178)
T PF02826_consen   80 VEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPL  159 (178)
T ss_dssp             EEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSS
T ss_pred             ceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCC
Confidence            24579999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCC-ccccCCceEEcCCCC
Q 020073          280 VPK-ELLELDNVVLQPHRA  297 (331)
Q Consensus       280 ~~~-~L~~~~nvilTPH~a  297 (331)
                      +.+ |||++|||++|||+|
T Consensus       160 ~~~~~l~~~~nvi~TPH~a  178 (178)
T PF02826_consen  160 PADSPLWDLPNVILTPHIA  178 (178)
T ss_dssp             STTHHHHTSTTEEEESS-T
T ss_pred             CCCChHHcCCCEEEeCccC
Confidence            865 999999999999997

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=99.97  E-value=2.1e-31  Score=248.33  Aligned_cols=253  Identities=23%  Similarity=0.381  Sum_probs=225.2

Q ss_pred             EEEEeCCCCCCHHHHhcCCCceEEEEccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHH
Q 020073           64 AILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLR  143 (331)
Q Consensus        64 ~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~  143 (331)
                      .-+...+..++++-+++++.||++...+.|+|++|+.++.+.||.|||.|+..-+.+|+-++..+|.++|+-.-..+.++
T Consensus        76 gam~yh~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~l~  155 (435)
T KOG0067|consen   76 GAMMYHTITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQALR  155 (435)
T ss_pred             hcceeeecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhhhc
Confidence            33444556799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccCCC----CCC-CccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCC
Q 020073          144 QGLWSKIGD----YPL-GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSD  213 (331)
Q Consensus       144 ~g~w~~~~~----~~~-~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aD  213 (331)
                      +|.|...-.    ... ....+|.+.|++|+|+.|++++.++++||+.|+.||+....     .+.....++.+++.++|
T Consensus       156 eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~~~~sd  235 (435)
T KOG0067|consen  156 EGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDLLYQSD  235 (435)
T ss_pred             ccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchhhhhcc
Confidence            999864311    111 34689999999999999999999999999999999987654     34444457999999999


Q ss_pred             EEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCC--CCccccCCceE
Q 020073          214 ALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYV--PKELLELDNVV  291 (331)
Q Consensus       214 iV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~--~~~L~~~~nvi  291 (331)
                      .+++||-+++.+.++|+.-.+.+|+.|++++|++||.++|+.+|.++|+.|++.|++       |..  -.||-+-||.+
T Consensus       236 ~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~~l~d~pn~i  308 (435)
T KOG0067|consen  236 CVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQGPLKDAPNLI  308 (435)
T ss_pred             ceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------CcccccccccCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999988       221  23788999999


Q ss_pred             EcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 020073          292 LQPHRAVFTSECFVDLCELAVGNLEALFSNQP  323 (331)
Q Consensus       292 lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  323 (331)
                      +|||.++++..+..++.+.++..+++-..|.-
T Consensus       309 c~~~ta~~~e~~~~e~re~aa~eiR~ai~g~i  340 (435)
T KOG0067|consen  309 CTPHTAWYSEAASVELREVAALEIRRAITGRI  340 (435)
T ss_pred             CCcccchhhHHHHHHHHHHHhhhhhhccCCCC
Confidence            99999999999999999999999998887753

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.89  E-value=1.8e-22  Score=168.32  Aligned_cols=101  Identities=28%  Similarity=0.458  Sum_probs=82.1

Q ss_pred             EEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCCCC
Q 020073           18 VLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHI   97 (331)
Q Consensus        18 vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~i   97 (331)
                      ||++++.  +++..+. |++.+++.. .. ..+ .+.+.+.+.++|+++++..+++++++++++|+||||++.|+|+|+|
T Consensus         1 ili~~~~--~~~~~~~-l~~~~~v~~-~~-~~~-~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   74 (133)
T PF00389_consen    1 ILITDPL--PDEEIER-LEEGFEVEF-CD-SPS-EEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNI   74 (133)
T ss_dssp             EEESSS---SHHHHHH-HHHTSEEEE-ES-SSS-HHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB
T ss_pred             eEEeccC--CHHHHHH-HHCCceEEE-eC-CCC-HHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCcc
Confidence            6788876  6788888 888666544 33 222 3445666789999999776679999999999999999999999999


Q ss_pred             ChhHHhhCCcEEEeCCCCChHHHHHHH
Q 020073           98 HMPECRRRGIAVANAGSIFSDDAADAA  124 (331)
Q Consensus        98 d~~~~~~~gI~v~n~~~~~~~~vAE~a  124 (331)
                      |+++|+++||.|+|+||+++.+||||+
T Consensus        75 d~~~a~~~gI~V~n~~g~~~~aVAE~a  101 (133)
T PF00389_consen   75 DLEAAKERGIPVTNVPGYNAEAVAEHA  101 (133)
T ss_dssp             -HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred             cHHHHhhCeEEEEEeCCcCCcchhccc
Confidence            999999999999999999999999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.87  E-value=2.6e-21  Score=190.08  Aligned_cols=166  Identities=20%  Similarity=0.294  Sum_probs=135.6

Q ss_pred             EEccCCCCCCC-hhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEE
Q 020073           88 VTASAGVNHIH-MPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGI  166 (331)
Q Consensus        88 ~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgI  166 (331)
                      =-+++|+..+- ++.....+|+|+|+|+++..+++|+++++++++.      +..+|.+          +..+.|++++|
T Consensus       196 EeTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~----------~~~LaGKtVgV  259 (476)
T PTZ00075        196 EETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRAT----------DVMIAGKTVVV  259 (476)
T ss_pred             ecchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhc----------CCCcCCCEEEE
Confidence            34577776652 2222336899999999999999999999999988      3344443          23689999999


Q ss_pred             EecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCC
Q 020073          167 VGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKE  240 (331)
Q Consensus       167 iG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~g  240 (331)
                      +|+|.||+.+|+++++||++|+++++.+..      .++ ...++++++++||+|++|+    .+.++|+++.|++||+|
T Consensus       260 IG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~-~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpG  334 (476)
T PTZ00075        260 CGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGY-QVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNN  334 (476)
T ss_pred             ECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCc-eeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCC
Confidence            999999999999999999999999776543      122 2457999999999999984    37889999999999999


Q ss_pred             cEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCC
Q 020073          241 GIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP  281 (331)
Q Consensus       241 a~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~  281 (331)
                      ++|||+||+   |++.++++|+++.    ++||++.||...
T Consensus       335 AiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~  368 (476)
T PTZ00075        335 AIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD  368 (476)
T ss_pred             cEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence            999999999   7888889998754    799999999654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.83  E-value=1.7e-20  Score=175.95  Aligned_cols=148  Identities=19%  Similarity=0.291  Sum_probs=126.0

Q ss_pred             CCCHHHHhcCCCceEEEEccCCCCCCChh-HHhhCCcEEE------eCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHc
Q 020073           72 PVTLDILRLLPKLRLVVTASAGVNHIHMP-ECRRRGIAVA------NAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQ  144 (331)
Q Consensus        72 ~i~~~~l~~~p~Lk~I~~~~~G~d~id~~-~~~~~gI~v~------n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~  144 (331)
                      ++++++++++|.   ++...+|+++.|++ +|+++||.|+      |++.+|+.++||.++.+++..             
T Consensus        81 ~l~~~~l~~~~~---~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~-------------  144 (287)
T TIGR02853        81 VLTPELLESTKG---HCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH-------------  144 (287)
T ss_pred             cccHHHHHhcCC---CCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh-------------
Confidence            467899999983   77788899999988 8999999999      899999999999999987742             


Q ss_pred             CCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc--ccCCHHhhhcCCCEEE
Q 020073          145 GLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA--FYSNVCELAANSDALI  216 (331)
Q Consensus       145 g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~--~~~~l~ell~~aDiV~  216 (331)
                                .+.+++|++++|+|+|.||+.+|+.|+++|++|++++|+...      .+..  ...++.++++++|+|+
T Consensus       145 ----------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVi  214 (287)
T TIGR02853       145 ----------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVI  214 (287)
T ss_pred             ----------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEE
Confidence                      123688999999999999999999999999999999998653      1221  2346788999999999


Q ss_pred             EeccCChhhhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073          217 ICCALTDQTRRMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       217 l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                      +|+|.+     +++++.++.||+++++||++...
T Consensus       215 nt~P~~-----ii~~~~l~~~k~~aliIDlas~P  243 (287)
T TIGR02853       215 NTIPAL-----VLTADVLSKLPKHAVIIDLASKP  243 (287)
T ss_pred             ECCChH-----HhCHHHHhcCCCCeEEEEeCcCC
Confidence            999864     77889999999999999999844

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.67  E-value=9.2e-16  Score=144.62  Aligned_cols=162  Identities=17%  Similarity=0.271  Sum_probs=128.4

Q ss_pred             hcCCeeEEEEeCC----------------CCCCHHHHhcCCCceEEEEccCCCCCCChhHHhhCCcEEEeCCCC------
Q 020073           58 HAHSIEAILCSGD----------------SPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSI------  115 (331)
Q Consensus        58 ~~~~~d~ii~~~~----------------~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~------  115 (331)
                      .+.++|+|+..-+                ..++++.++.+|++..+. .|.+.++++ +.+.++||.+.+....      
T Consensus        52 ~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~  129 (296)
T PRK08306         52 ALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAIL  129 (296)
T ss_pred             HhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhhh
Confidence            3468898886411                124788999999997544 588889988 8889999999987764      


Q ss_pred             ChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          116 FSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       116 ~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      ++.++||.++.+.+.   +                    .+.++.|++++|||+|.+|+.+++.|+.+|++|.+++|+..
T Consensus       130 ns~~~aegav~~a~~---~--------------------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~  186 (296)
T PRK08306        130 NSIPTAEGAIMMAIE---H--------------------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA  186 (296)
T ss_pred             ccHhHHHHHHHHHHH---h--------------------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            888999997775442   0                    12357899999999999999999999999999999999864


Q ss_pred             C------CCcc--ccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 020073          196 P------VPYA--FYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       196 ~------~~~~--~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg  249 (331)
                      .      .+..  .+.++.+.++++|+|+.++|.     .+++++.++.|++++++||++..
T Consensus       187 ~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~  243 (296)
T PRK08306        187 HLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLASK  243 (296)
T ss_pred             HHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEccC
Confidence            3      2222  234678889999999999874     46889999999999999999863

>PLN02494 adenosylhomocysteinase

Probab=99.64  E-value=5e-16  Score=152.65  Aligned_cols=115  Identities=19%  Similarity=0.275  Sum_probs=100.8

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      .+.|++++|+|+|.||+.+|+++++||++|+++++++..      .++. ..+++++++.+|+|+.+    ..+++++++
T Consensus       251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~-vv~leEal~~ADVVI~t----TGt~~vI~~  325 (477)
T PLN02494        251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQ-VLTLEDVVSEADIFVTT----TGNKDIIMV  325 (477)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe-eccHHHHHhhCCEEEEC----CCCccchHH
Confidence            479999999999999999999999999999999887643      2232 34789999999999973    457889999


Q ss_pred             HHHhcCCCCcEEEEcCC-CCccCHHHHHHH--HHhCCceEEEeecCCCCC
Q 020073          232 EVMLALGKEGIIVNVGR-GAVIDENEMVRC--LVRGEIAGAGLDVFENEP  278 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~sr-g~~vd~~al~~a--L~~~~i~ga~lDV~~~EP  278 (331)
                      +.|+.||+|++++|+|| +..||+++|.++  ++.+.++ +.+|+|+.|-
T Consensus       326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d  374 (477)
T PLN02494        326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD  374 (477)
T ss_pred             HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence            99999999999999999 689999999998  9999998 9999999753

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.54  E-value=2.7e-14  Score=139.25  Aligned_cols=114  Identities=21%  Similarity=0.262  Sum_probs=99.3

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      .+.|++++|+|+|.||+.+|++++++|++|+++++.+.+      .++ ...+++++++.+|+|+.+..    +.++|+.
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~-~v~~leeal~~aDVVItaTG----~~~vI~~  266 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGF-RVMTMEEAAKIGDIFITATG----NKDVIRG  266 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCC-EeCCHHHHHhcCCEEEECCC----CHHHHHH
Confidence            478999999999999999999999999999999876643      222 23467889999999987643    6788999


Q ss_pred             HHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHhCCceEEEeecCCC
Q 020073          232 EVMLALGKEGIIVNVGRGAV-IDENEMVRCLVRGEIAGAGLDVFEN  276 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~srg~~-vd~~al~~aL~~~~i~ga~lDV~~~  276 (331)
                      +.|..||+|++++|+||+.+ ||.++|.+++.+.+..+..+|+|.-
T Consensus       267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~  312 (406)
T TIGR00936       267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL  312 (406)
T ss_pred             HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence            99999999999999999998 9999999999888877899999884

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.52  E-value=3.5e-14  Score=133.50  Aligned_cols=91  Identities=22%  Similarity=0.309  Sum_probs=77.1

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~  230 (331)
                      ..|+|+||||||+|+||+++|++|+++|++|+++++....      .+.. ..++++++++||+|++|+|+ ++++++++
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~-v~sl~Eaak~ADVV~llLPd-~~t~~V~~   89 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFE-VMSVSEAVRTAQVVQMLLPD-EQQAHVYK   89 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCE-ECCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence            3699999999999999999999999999999998765332      1332 35899999999999999997 67899999


Q ss_pred             HHHHhcCCCCcEEEEcCCCC
Q 020073          231 REVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~srg~  250 (331)
                      ++.++.||+|++|+- |.|=
T Consensus        90 ~eil~~MK~GaiL~f-~hgf  108 (335)
T PRK13403         90 AEVEENLREGQMLLF-SHGF  108 (335)
T ss_pred             HHHHhcCCCCCEEEE-CCCc
Confidence            999999999998764 3444

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.41  E-value=4.8e-13  Score=115.38  Aligned_cols=110  Identities=22%  Similarity=0.372  Sum_probs=89.2

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhc-cHHHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMI-NREVM  234 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li-~~~~l  234 (331)
                      ++|||||+|.||+.+|++|...|++|++|||++++      .+.....++.|+++++|+|++|+|..++++.++ +.+.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~   81 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL   81 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence            68999999999999999999999999999998654      345567899999999999999999988888876 22378


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeec
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDV  273 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV  273 (331)
                      +.+++|.++||++....-....+.+.+.+..+.  .+|.
T Consensus        82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda  118 (163)
T PF03446_consen   82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDA  118 (163)
T ss_dssp             GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEE
T ss_pred             hccccceEEEecCCcchhhhhhhhhhhhhccce--eeee
Confidence            889999999999999999999999999987765  4554

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.38  E-value=1.9e-12  Score=120.52  Aligned_cols=117  Identities=18%  Similarity=0.227  Sum_probs=101.9

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc--HH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN--RE  232 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~--~~  232 (331)
                      .+||+||+|.||..+|++|...|+.|++|||++.+       .+.....+..|+.+++|+|++|+|.+++.+..+-  ..
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g   80 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG   80 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence            37999999999999999999999999999999765       2555667889999999999999999999999884  67


Q ss_pred             HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCC
Q 020073          233 VMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEP  278 (331)
Q Consensus       233 ~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP  278 (331)
                      .++.+|+|+++||+|.-+......+.++++++.+...--=|....+
T Consensus        81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~  126 (286)
T COG2084          81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVP  126 (286)
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCch
Confidence            8999999999999999999999999999999998633333555555

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.35  E-value=6.6e-12  Score=123.24  Aligned_cols=151  Identities=21%  Similarity=0.265  Sum_probs=110.6

Q ss_pred             EEccCCCCCC-ChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEE
Q 020073           88 VTASAGVNHI-HMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGI  166 (331)
Q Consensus        88 ~~~~~G~d~i-d~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgI  166 (331)
                      =-+++|+..+ ......+.+++|.|++..+..+.-|...+.--               +.|.... ...+..+.|++++|
T Consensus       154 EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~---------------s~~~ai~-rat~~~l~Gk~VlV  217 (425)
T PRK05476        154 EETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGE---------------SLLDGIK-RATNVLIAGKVVVV  217 (425)
T ss_pred             ecchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHh---------------hhHHHHH-HhccCCCCCCEEEE
Confidence            4567787765 22333457899999999887775553332222               2221100 00123478999999


Q ss_pred             EecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCC
Q 020073          167 VGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKE  240 (331)
Q Consensus       167 iG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~g  240 (331)
                      +|+|.||+.+|++++++|++|+++++.+.+      .++. ..+++++++.+|+|+.++    .+.++|+.+.|..||+|
T Consensus       218 iG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~-v~~l~eal~~aDVVI~aT----G~~~vI~~~~~~~mK~G  292 (425)
T PRK05476        218 AGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFR-VMTMEEAAELGDIFVTAT----GNKDVITAEHMEAMKDG  292 (425)
T ss_pred             ECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCE-ecCHHHHHhCCCEEEECC----CCHHHHHHHHHhcCCCC
Confidence            999999999999999999999999987654      2222 357899999999998875    35678999999999999


Q ss_pred             cEEEEcCCCCc-cCHHHHHH
Q 020073          241 GIIVNVGRGAV-IDENEMVR  259 (331)
Q Consensus       241 a~lIn~srg~~-vd~~al~~  259 (331)
                      ++++|+|+... +|.++|.+
T Consensus       293 ailiNvG~~d~Eid~~~L~~  312 (425)
T PRK05476        293 AILANIGHFDNEIDVAALEE  312 (425)
T ss_pred             CEEEEcCCCCCccChHHHhh
Confidence            99999999886 77777654

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.32  E-value=7.9e-12  Score=117.46  Aligned_cols=105  Identities=12%  Similarity=0.216  Sum_probs=89.5

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhc-c-HHHH
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMI-N-REVM  234 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li-~-~~~l  234 (331)
                      +|||||+|.||+.+|+.+...|++|++|+|++..      .+.....+..+++++||+|++|+|.++.++.++ + ...+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~   80 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII   80 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence            4899999999999999999999999999998754      233335678899999999999999888887765 3 3467


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      ..+++|.++||++++...+.+++.+.++++.+.
T Consensus        81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~  113 (291)
T TIGR01505        81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID  113 (291)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence            788999999999999998889999999987654

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.30  E-value=1.3e-11  Score=116.15  Aligned_cols=117  Identities=18%  Similarity=0.254  Sum_probs=95.6

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc--HHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN--REV  233 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~--~~~  233 (331)
                      ++|||||+|.||+.+|+.+...|++|.+||+++..      .+.....++++++++||+|++|+|.+..++.++.  ...
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~   82 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI   82 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence            47999999999999999999999999999998654      2233456789999999999999999888887763  346


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCC
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEP  278 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP  278 (331)
                      ++.+++|.++||+++......+++.+.+.+..+...---|+..+|
T Consensus        83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~  127 (296)
T PRK11559         83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP  127 (296)
T ss_pred             hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence            778899999999999998888899999988766533334555444

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.26  E-value=1.4e-11  Score=105.31  Aligned_cols=97  Identities=23%  Similarity=0.379  Sum_probs=70.5

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      .+.||++.|+|||.+|+.+|+.|+++|++|.+++..|-.      .++. ..+++++++++|+++.++-    ..+++..
T Consensus        20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~-v~~~~~a~~~adi~vtaTG----~~~vi~~   94 (162)
T PF00670_consen   20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFE-VMTLEEALRDADIFVTATG----NKDVITG   94 (162)
T ss_dssp             --TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-E-EE-HHHHTTT-SEEEE-SS----SSSSB-H
T ss_pred             eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcE-ecCHHHHHhhCCEEEECCC----CccccCH
Confidence            589999999999999999999999999999999987644      3343 4589999999999988753    3567899


Q ss_pred             HHHhcCCCCcEEEEcCCCCc-cCHHHHHH
Q 020073          232 EVMLALGKEGIIVNVGRGAV-IDENEMVR  259 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~srg~~-vd~~al~~  259 (331)
                      +.|.+||+|+++.|++.-.. +|-+.|.+
T Consensus        95 e~~~~mkdgail~n~Gh~d~Eid~~~L~~  123 (162)
T PF00670_consen   95 EHFRQMKDGAILANAGHFDVEIDVDALEA  123 (162)
T ss_dssp             HHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred             HHHHHhcCCeEEeccCcCceeEeeccccc
Confidence            99999999999999987554 56555443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.24  E-value=4.3e-11  Score=112.96  Aligned_cols=110  Identities=15%  Similarity=0.232  Sum_probs=93.6

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc--HHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN--REV  233 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~--~~~  233 (331)
                      ++|||||+|.||..+|+.|...|++|++||+++..      .+.....+..+++++||+|++|+|....++..+.  ...
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i   81 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV   81 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence            47999999999999999999999999999998764      2333456888999999999999998877777763  346


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeec
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDV  273 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV  273 (331)
                      +..+++|.++||+|++.....+.+.+.+.+..+.  .+|.
T Consensus        82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda  119 (296)
T PRK15461         82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV  119 (296)
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence            7778999999999999999999999999998876  3553

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.22  E-value=6.9e-11  Score=111.69  Aligned_cols=107  Identities=21%  Similarity=0.328  Sum_probs=91.9

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcC---CCEEEEeccCChhhhhhccHHH
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAAN---SDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~---aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      +|||||+|.||+.+|++|...|++|++|||++..      .+.....++++++++   +|+|++|+|..+.++.++ .+.
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~i   80 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KDL   80 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HHH
Confidence            6999999999999999999999999999998654      233445688888876   699999999888888887 457


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLD  272 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lD  272 (331)
                      +..+++|.++||+|++...+..++.+.+.+..+.  .+|
T Consensus        81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd  117 (299)
T PRK12490         81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD  117 (299)
T ss_pred             hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence            7789999999999999999999999999988765  366

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.17  E-value=4.8e-11  Score=113.58  Aligned_cols=114  Identities=26%  Similarity=0.325  Sum_probs=85.5

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhc
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMI  229 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li  229 (331)
                      ..++|++|||||+|+||+++|+.|+.+|++|+++++...+       .+.. ..+..+++++||+|++++|.+.. ..++
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~-~~s~~eaa~~ADVVvLaVPd~~~-~~V~   90 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFE-VLTVAEAAKWADVIMILLPDEVQ-AEVY   90 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCe-eCCHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence            3589999999999999999999999999999887665332       2332 34889999999999999997755 7777


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCc-eEEEeecCCCCCCCCC
Q 020073          230 NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEI-AGAGLDVFENEPYVPK  282 (331)
Q Consensus       230 ~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i-~ga~lDV~~~EP~~~~  282 (331)
                      +++.+..|++|+++ -.+.|--+..         +.+ -+...||+-..|..|.
T Consensus        91 ~~~I~~~Lk~g~iL-~~a~G~~i~~---------~~~~p~~~~~Vi~vaPn~Pg  134 (330)
T PRK05479         91 EEEIEPNLKEGAAL-AFAHGFNIHF---------GQIVPPADVDVIMVAPKGPG  134 (330)
T ss_pred             HHHHHhcCCCCCEE-EECCCCChhh---------ceeccCCCCcEEEeCCCCCc
Confidence            78888899999987 5566622211         111 1345788888886543

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.16  E-value=2.1e-10  Score=108.49  Aligned_cols=108  Identities=23%  Similarity=0.285  Sum_probs=91.8

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcC---CCEEEEeccCChhhhhhccHHH
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAAN---SDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~---aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      +|||||+|.||+.+|++|...|.+|.+||++++.      .+.....+++++++.   +|+|++++|..+.+..++ ...
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~l   80 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DEL   80 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HHH
Confidence            7999999999999999999999999999998754      233445678888775   699999999887888877 467


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeec
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDV  273 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV  273 (331)
                      +..+++|.++||++++.......+.+.+++..+.  .+|.
T Consensus        81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da  118 (301)
T PRK09599         81 APLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV  118 (301)
T ss_pred             HhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence            7889999999999999999999999999998876  3564

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.14  E-value=2e-10  Score=115.06  Aligned_cols=116  Identities=14%  Similarity=0.193  Sum_probs=100.2

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----C-----Ccc---ccCCHHhhhcC---CCEEEEeccCChhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----V-----PYA---FYSNVCELAAN---SDALIICCALTDQT  225 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~-----~~~---~~~~l~ell~~---aDiV~l~~P~t~~t  225 (331)
                      .+||+||+|.||+.+|++|...|++|.+|||++.+     .     +..   ...++.++.+.   +|+|++|+|..+.+
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV   86 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV   86 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence            36999999999999999999999999999998764     1     221   35678888875   99999999999999


Q ss_pred             hhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCC
Q 020073          226 RRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEP  278 (331)
Q Consensus       226 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP  278 (331)
                      +.++ ...++.+++|.++||+|....-+...+.+.+++..+.....=|+..++
T Consensus        87 ~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~  138 (493)
T PLN02350         87 DQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE  138 (493)
T ss_pred             HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence            9988 568888999999999999999999999999999999866666776665

>PLN02712 arogenate dehydrogenase

Probab=99.10  E-value=3e-10  Score=117.90  Aligned_cols=107  Identities=21%  Similarity=0.347  Sum_probs=85.7

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhc-CCCEEEEeccCChhhhhhc
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAA-NSDALIICCALTDQTRRMI  229 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~-~aDiV~l~~P~t~~t~~li  229 (331)
                      +.++.+++|||||+|.||+.+|+.++.+|++|++++++...     .+.....++++++. .+|+|++|+| ...+..++
T Consensus       364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~vi  442 (667)
T PLN02712        364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEKVL  442 (667)
T ss_pred             cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHHHH
Confidence            56788999999999999999999999999999999987532     23334567888776 5999999999 46788888


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073          230 NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR  263 (331)
Q Consensus       230 ~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~  263 (331)
                      .+-....||+|++++|++.++-...+++.+.+..
T Consensus       443 ~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~  476 (667)
T PLN02712        443 KSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ  476 (667)
T ss_pred             HHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence            7655557999999999999985555566655544

>PLN02256 arogenate dehydrogenase

Probab=99.09  E-value=1.9e-09  Score=102.07  Aligned_cols=131  Identities=22%  Similarity=0.324  Sum_probs=92.4

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhh-cCCCEEEEeccCChhhhhhccHH
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELA-ANSDALIICCALTDQTRRMINRE  232 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell-~~aDiV~l~~P~t~~t~~li~~~  232 (331)
                      -++++|+|||+|.||+.+|+.++..|.+|++++++...     .+.....++++++ .++|+|++|+|.. .+..++.+-
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~-~~~~vl~~l  112 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSIL-STEAVLRSL  112 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHH-HHHHHHHhh
Confidence            35679999999999999999999999999999987532     2333346778876 4799999999954 677777543


Q ss_pred             HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCC----CccccCCceEEcCCC
Q 020073          233 VMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP----KELLELDNVVLQPHR  296 (331)
Q Consensus       233 ~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~----~~L~~~~nvilTPH~  296 (331)
                      ....+++++++++++.++-+..+++.+.+..+.      .+...-|...    ...+...+++++|..
T Consensus       113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~------~~V~~HPmaG~e~~~~~~~~~~~~~~~~~  174 (304)
T PLN02256        113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEF------DILCTHPMFGPESGKGGWAGLPFVYDKVR  174 (304)
T ss_pred             hhhccCCCCEEEecCCchHHHHHHHHHhCCCCC------eEEecCCCCCCCCCccccCCCeEEEecce
Confidence            356689999999999977666666666664422      1222233211    134556667777754

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.07  E-value=7e-10  Score=108.74  Aligned_cols=98  Identities=20%  Similarity=0.309  Sum_probs=81.7

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~  230 (331)
                      ..+.|++|+|+|+|.||+.+|+.++++|++|+++++++.+      .+. ...+++++++.+|+|+.+..    +.+.++
T Consensus       198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~-~~~~~~e~v~~aDVVI~atG----~~~~i~  272 (413)
T cd00401         198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGY-EVMTMEEAVKEGDIFVTTTG----NKDIIT  272 (413)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCC-EEccHHHHHcCCCEEEECCC----CHHHHH
Confidence            3578999999999999999999999999999999887654      233 23357788999999998743    456788


Q ss_pred             HHHHhcCCCCcEEEEcCCCCc-cCHHHHHH
Q 020073          231 REVMLALGKEGIIVNVGRGAV-IDENEMVR  259 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~srg~~-vd~~al~~  259 (331)
                      .+.+..||+|++++|+|++.+ +|..+|..
T Consensus       273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~  302 (413)
T cd00401         273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence            888999999999999999876 78777664

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.04  E-value=1.3e-09  Score=102.83  Aligned_cols=109  Identities=19%  Similarity=0.191  Sum_probs=90.2

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc--HHHHh
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMIN--REVML  235 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~--~~~l~  235 (331)
                      +|||||+|.||+.+|+.|...|++|.+|++++..     .+.....+..++.++||+|++|+|..+.++..+.  ...++
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~   81 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK   81 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc
Confidence            6999999999999999999999999999987543     2333456788899999999999998888777662  23567


Q ss_pred             cCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeec
Q 020073          236 ALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDV  273 (331)
Q Consensus       236 ~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV  273 (331)
                      .+++|.++|++|....-....+.+.+.+..+.  .+|.
T Consensus        82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda  117 (292)
T PRK15059         82 ASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA  117 (292)
T ss_pred             cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence            78999999999999988888999999887664  4563

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.00  E-value=3.1e-09  Score=100.42  Aligned_cols=103  Identities=18%  Similarity=0.283  Sum_probs=85.3

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhh---hcCCCEEEEeccCChhhhhhccHHH
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCEL---AANSDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~el---l~~aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      +|||||+|.||..+|+.|...|++|.+|||++..      .+.....+++++   +.++|+|++++|.. .++.++ .+.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~l   79 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EEL   79 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HHH
Confidence            7999999999999999999999999999998754      122223455554   56789999999987 888887 466


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      ...+++|.++||++.+...+...+.+.+++..+.
T Consensus        80 ~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~  113 (298)
T TIGR00872        80 APTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH  113 (298)
T ss_pred             HhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence            7788999999999999888999999999887775

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=98.98  E-value=1.9e-09  Score=107.73  Aligned_cols=116  Identities=18%  Similarity=0.270  Sum_probs=98.3

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----C-----C--ccccCCHHhhhc---CCCEEEEeccCChhhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----V-----P--YAFYSNVCELAA---NSDALIICCALTDQTR  226 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~-----~--~~~~~~l~ell~---~aDiV~l~~P~t~~t~  226 (331)
                      .+|||||+|.||+.+|++|...|++|.+|||+++.     .     +  .....++++++.   ++|+|++++|....++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~   81 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD   81 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence            47999999999999999999999999999998764     1     2  123568888886   5899999999999999


Q ss_pred             hhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCC
Q 020073          227 RMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEP  278 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP  278 (331)
                      .++ .+.+..+++|.++||++.+.--|...+.+.+.+..+.....=|...++
T Consensus        82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~  132 (470)
T PTZ00142         82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE  132 (470)
T ss_pred             HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence            988 567788999999999999999999999999999988755555665544

>PRK08655 prephenate dehydrogenase; Provisional

Probab=98.95  E-value=7.2e-09  Score=102.91  Aligned_cols=127  Identities=20%  Similarity=0.336  Sum_probs=92.8

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHH
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      ++|+||| +|.||+.+|+.|+..|.+|.++++++..       .+.....++.+.+.++|+|++|+|.. .+..++ ++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l   78 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEV   78 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHH
Confidence            3799998 8999999999999999999999987543       13333457888999999999999964 556666 556


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCC--CCCccccCCceEEcCCC
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPY--VPKELLELDNVVLQPHR  296 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~--~~~~L~~~~nvilTPH~  296 (331)
                      ...+++++++++++..+....+++.+.+..+.      .+...-|.  +..+++....++++|+-
T Consensus        79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~------~~V~~HPmaGp~~~~~~g~~~il~p~~  137 (437)
T PRK08655         79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEGV------EILPTHPMFGPRTPSLKGQVVILTPTE  137 (437)
T ss_pred             HhhCCCCCEEEEcccccHHHHHHHHHhcCCCC------EEEEcCCCCCCCCcccCCCEEEEecCC
Confidence            67789999999999876555566666554321      12222332  22357778899999965

>PLN02858 fructose-bisphosphate aldolase

Probab=98.95  E-value=3.3e-09  Score=117.74  Aligned_cols=112  Identities=20%  Similarity=0.203  Sum_probs=97.0

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhc--cH
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMI--NR  231 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li--~~  231 (331)
                      ..++||+||+|.||..||++|...|++|.+|||++.+      .+.....+..++.++||+|++|+|..+.++.++  ..
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~   82 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE   82 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence            3568999999999999999999999999999998765      344556799999999999999999999999887  35


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCC--ceEEEeec
Q 020073          232 EVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGE--IAGAGLDV  273 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~--i~ga~lDV  273 (331)
                      ..++.+++|.++|++|....-....+.+.+.+..  +.  .+|.
T Consensus        83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~--~lDa  124 (1378)
T PLN02858         83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIF--LVDA  124 (1378)
T ss_pred             hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceE--EEEc
Confidence            6788899999999999999999999999998876  53  4664

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=98.94  E-value=3.3e-09  Score=99.66  Aligned_cols=105  Identities=14%  Similarity=0.146  Sum_probs=86.1

Q ss_pred             EEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc--HHHHhcC
Q 020073          166 IVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN--REVMLAL  237 (331)
Q Consensus       166 IiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~--~~~l~~m  237 (331)
                      |||+|.||..+|+.|...|++|.+|||++..      .+.....++.++++++|+|++|+|....++.++.  ...+..+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~   80 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV   80 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence            6899999999999999999999999998754      2333456889999999999999998777777762  4566788


Q ss_pred             CCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEee
Q 020073          238 GKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLD  272 (331)
Q Consensus       238 k~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lD  272 (331)
                      ++|.++||++....-....+.+.+.+..+.  .+|
T Consensus        81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd  113 (288)
T TIGR01692        81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD  113 (288)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence            999999999977766777888888876664  356

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PLN02858 fructose-bisphosphate aldolase

Probab=98.92  E-value=5.1e-09  Score=116.26  Aligned_cols=110  Identities=24%  Similarity=0.194  Sum_probs=94.1

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhc--cHH
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMI--NRE  232 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li--~~~  232 (331)
                      .++|||||+|.||..+|++|...|++|.+||+++..      .+.....+..+++++||+|++|+|..++++.++  +..
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g  403 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG  403 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence            478999999999999999999999999999998754      233345688999999999999999999998887  456


Q ss_pred             HHhcCCCCcEEEEcCCCCccCHHHHHHHHHh--CCceEEEee
Q 020073          233 VMLALGKEGIIVNVGRGAVIDENEMVRCLVR--GEIAGAGLD  272 (331)
Q Consensus       233 ~l~~mk~ga~lIn~srg~~vd~~al~~aL~~--~~i~ga~lD  272 (331)
                      .++.+++|.++||+|....-..+.+.+.+.+  ..+.  .+|
T Consensus       404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lD  443 (1378)
T PLN02858        404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVD  443 (1378)
T ss_pred             HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEE
Confidence            7888999999999999998888889999988  5554  455

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=98.91  E-value=4.3e-09  Score=97.36  Aligned_cols=113  Identities=19%  Similarity=0.247  Sum_probs=96.0

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhc--
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMI--  229 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li--  229 (331)
                      ..+.++||+||+|.||..++..|...|++|++|||+.+.      .+.....+..|+.+.||+|+.++|.....+.++  
T Consensus        32 ~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g  111 (327)
T KOG0409|consen   32 TPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLG  111 (327)
T ss_pred             CcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcC
Confidence            346789999999999999999999999999999998765      355567899999999999999999998888877  


Q ss_pred             cHHHHhcCCCCcEE-EEcCCCCccCHHHHHHHHHhCCceEEEee
Q 020073          230 NREVMLALGKEGII-VNVGRGAVIDENEMVRCLVRGEIAGAGLD  272 (331)
Q Consensus       230 ~~~~l~~mk~ga~l-In~srg~~vd~~al~~aL~~~~i~ga~lD  272 (331)
                      ....++..++|... |+.+.-+.--...+.+++.....+  .+|
T Consensus       112 ~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vD  153 (327)
T KOG0409|consen  112 KSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVD  153 (327)
T ss_pred             CCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEe
Confidence            45577777888777 899988777778899999988765  455

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=98.90  E-value=6e-09  Score=104.08  Aligned_cols=115  Identities=18%  Similarity=0.236  Sum_probs=93.3

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C---C--ccccCCHHhhh---cCCCEEEEeccCChhhhhh
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V---P--YAFYSNVCELA---ANSDALIICCALTDQTRRM  228 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~---~--~~~~~~l~ell---~~aDiV~l~~P~t~~t~~l  228 (331)
                      .|||||+|.||+.+|++|...|++|.+|||++..      .   +  .....++.++.   +++|+|++++|..+.+..+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V   80 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV   80 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence            3899999999999999999999999999998764      1   1  22345676665   5799999999998888888


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCC
Q 020073          229 INREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEP  278 (331)
Q Consensus       229 i~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP  278 (331)
                      + .+.+..+++|.++||++.+..-|.....+.+.+..+.....=|...++
T Consensus        81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~  129 (467)
T TIGR00873        81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEE  129 (467)
T ss_pred             H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHH
Confidence            8 457788999999999999998998999999998888755444555443

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.88  E-value=2.1e-08  Score=94.48  Aligned_cols=99  Identities=18%  Similarity=0.225  Sum_probs=75.4

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCCC-----------------------------ccccCCHHhhhcCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVP-----------------------------YAFYSNVCELAANS  212 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----------------------------~~~~~~l~ell~~a  212 (331)
                      ++|+|||+|.||..+|+.+...|++|+++|+++....                             .....+-.+.+++|
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a   84 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA   84 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence            6899999999999999999999999999998764310                             01112223568999


Q ss_pred             CEEEEeccCChhhhhhccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHh
Q 020073          213 DALIICCALTDQTRRMINREVMLALGKEGIIV-NVGRGAVIDENEMVRCLVR  263 (331)
Q Consensus       213 DiV~l~~P~t~~t~~li~~~~l~~mk~ga~lI-n~srg~~vd~~al~~aL~~  263 (331)
                      |+|+.|+|.+++.+..+-++..+.++++++++ |+|.-   ....+.+.+..
T Consensus        85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i---~~~~l~~~~~~  133 (295)
T PLN02545         85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSI---SITRLASATQR  133 (295)
T ss_pred             CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCC---CHHHHHhhcCC
Confidence            99999999999988887777777789999887 66654   34456665543

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=98.88  E-value=2.8e-08  Score=94.22  Aligned_cols=136  Identities=20%  Similarity=0.264  Sum_probs=88.1

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC------CCc--cccCCHHhhhcCCCEEEEeccCChhhhhhc
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP------VPY--AFYSNVCELAANSDALIICCALTDQTRRMI  229 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~------~~~--~~~~~l~ell~~aDiV~l~~P~t~~t~~li  229 (331)
                      ..++|+|||+|.||..+|+.++..|.  +|+++++++..      .+.  ....++++.++++|+|++|+|.. .+..++
T Consensus         5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~   83 (307)
T PRK07502          5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA   83 (307)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH
Confidence            34689999999999999999998885  89999997643      121  22356788899999999999964 334444


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEe-ecCCCCC---CCC-CccccCCceEEcCCCCC
Q 020073          230 NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGL-DVFENEP---YVP-KELLELDNVVLQPHRAV  298 (331)
Q Consensus       230 ~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~l-DV~~~EP---~~~-~~L~~~~nvilTPH~a~  298 (331)
                       ++....++++.++++++..+.--.+++.+.+.. .+...+. -++..|-   ... .+|+.-.++++||+-++
T Consensus        84 -~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~  155 (307)
T PRK07502         84 -AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT  155 (307)
T ss_pred             -HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC
Confidence             445567899999999977553222333333322 2221111 2233221   111 25777788999996554

>PLN02712 arogenate dehydrogenase

Probab=98.85  E-value=2.7e-08  Score=103.48  Aligned_cols=104  Identities=23%  Similarity=0.396  Sum_probs=78.1

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhh-cCCCEEEEeccCChhhhhhccH
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELA-ANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell-~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      +-+.++|||||+|.||+.+|+.++.+|++|++++++...     .+.....++++++ .++|+|++|+|. ..+..++..
T Consensus        49 ~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~  127 (667)
T PLN02712         49 NTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS  127 (667)
T ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh
Confidence            345578999999999999999999999999999987432     2333456788865 569999999995 577888866


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 020073          232 EVMLALGKEGIIVNVGRGAVIDENEMVRCLV  262 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~srg~~vd~~al~~aL~  262 (331)
                      -.+..+++|++++|+++-+..--+++.+.+.
T Consensus       128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~  158 (667)
T PLN02712        128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLP  158 (667)
T ss_pred             hhhhcCCCCeEEEECCCCcHHHHHHHHHhcC
Confidence            4446789999999998666333334444443

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.85  E-value=9.5e-09  Score=97.71  Aligned_cols=91  Identities=24%  Similarity=0.281  Sum_probs=69.0

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCC-CC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK-KP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~-~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      |+|++|||||+|+||+++|+.|+.+|++|+++++.. ..      .+.. ..+..+++++||+|++++|.... ...+.+
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~-~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~   78 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFK-VGTVEEAIPQADLIMNLLPDEVQ-HEVYEA   78 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCE-ECCHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence            578999999999999999999999999887654432 22      2222 34688899999999999995533 334456


Q ss_pred             HHHhcCCCCcEEEEcCCCCcc
Q 020073          232 EVMLALGKEGIIVNVGRGAVI  252 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~srg~~v  252 (331)
                      +....++++. +|.++.|--+
T Consensus        79 ei~~~l~~g~-iVs~aaG~~i   98 (314)
T TIGR00465        79 EIQPLLKEGK-TLGFSHGFNI   98 (314)
T ss_pred             HHHhhCCCCc-EEEEeCCccH
Confidence            6677788886 7888888644

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.84  E-value=1.3e-08  Score=96.63  Aligned_cols=83  Identities=25%  Similarity=0.322  Sum_probs=69.2

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh-cCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML-ALG  238 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~-~mk  238 (331)
                      .+++|+|||+|.||+++|++|...|++|.+|+|+..       .++.++++++|+|++++|. ...+.+++. ... .++
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------~~~~~~~~~advvi~~vp~-~~~~~v~~~-l~~~~~~   73 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------LSLAAVLADADVIVSAVSM-KGVRPVAEQ-VQALNLP   73 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------CCHHHHHhcCCEEEEECCh-HHHHHHHHH-HHHhcCC
Confidence            356899999999999999999999999999998753       4788999999999999997 477777733 223 478


Q ss_pred             CCcEEEEcCCCCc
Q 020073          239 KEGIIVNVGRGAV  251 (331)
Q Consensus       239 ~ga~lIn~srg~~  251 (331)
                      +++++|++++|-.
T Consensus        74 ~~~ivi~~s~gi~   86 (308)
T PRK14619         74 PETIIVTATKGLD   86 (308)
T ss_pred             CCcEEEEeCCccc
Confidence            8999999988543

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.84  E-value=4.2e-09  Score=103.04  Aligned_cols=103  Identities=22%  Similarity=0.238  Sum_probs=77.2

Q ss_pred             cccCCCCCCC-ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCC------CC-----CCccccCCHHhhhcCCCE
Q 020073          147 WSKIGDYPLG-SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK------KP-----VPYAFYSNVCELAANSDA  214 (331)
Q Consensus       147 w~~~~~~~~~-~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~------~~-----~~~~~~~~l~ell~~aDi  214 (331)
                      |.+. .++.+ ..|+||+|+|||+|++|++.|..|+..|.+|++--|..      ..     .......++.|++++||+
T Consensus        22 ~~r~-ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADv  100 (487)
T PRK05225         22 MDRD-EFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADL  100 (487)
T ss_pred             cchh-hccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCE
Confidence            6543 34332 46999999999999999988888888888887444332      11     122234689999999999


Q ss_pred             EEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccC
Q 020073          215 LIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVID  253 (331)
Q Consensus       215 V~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd  253 (331)
                      |++.+|.+ + ++.+.++.++.||+|+.|. .|.|=-+.
T Consensus       101 VviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHGFni~  136 (487)
T PRK05225        101 VINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHGFNIV  136 (487)
T ss_pred             EEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCCceee
Confidence            99999999 3 7778899999999999864 45665433

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.83  E-value=7.2e-09  Score=88.39  Aligned_cols=89  Identities=21%  Similarity=0.306  Sum_probs=63.8

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      |+||+|+|||+|+.|++.|..|+..|.+|++..|...+       .++ ...++.|+.++||+|++.+|... -..+..+
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf-~v~~~~eAv~~aDvV~~L~PD~~-q~~vy~~   79 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGF-EVMSVAEAVKKADVVMLLLPDEV-QPEVYEE   79 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT--ECCEHHHHHHC-SEEEE-S-HHH-HHHHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCC-eeccHHHHHhhCCEEEEeCChHH-HHHHHHH
Confidence            57999999999999999999999999999988776653       233 34689999999999999999543 3445567


Q ss_pred             HHHhcCCCCcEEEEcCCCC
Q 020073          232 EVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~srg~  250 (331)
                      +....||+|+.|+ .+.|-
T Consensus        80 ~I~p~l~~G~~L~-fahGf   97 (165)
T PF07991_consen   80 EIAPNLKPGATLV-FAHGF   97 (165)
T ss_dssp             HHHHHS-TT-EEE-ESSSH
T ss_pred             HHHhhCCCCCEEE-eCCcc
Confidence            7888999999866 34443

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=98.81  E-value=3.8e-08  Score=92.08  Aligned_cols=130  Identities=22%  Similarity=0.229  Sum_probs=83.9

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc-ccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA-FYSNVCELAANSDALIICCALTDQTRRMINREVML  235 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~-~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~  235 (331)
                      +|+|||+|.||+.+|+.|+..|.+|.+|++++..      .+.. ...+..+.++++|+|++|+|... ...++ ++...
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~-~~l~~   79 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS-EQLIP   79 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHHHH
Confidence            6999999999999999999999999999987643      1111 12222356889999999999543 34444 55667


Q ss_pred             cCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEee-cCCCCCCC-C---CccccCCceEEcCCCCC
Q 020073          236 ALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLD-VFENEPYV-P---KELLELDNVVLQPHRAV  298 (331)
Q Consensus       236 ~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lD-V~~~EP~~-~---~~L~~~~nvilTPH~a~  298 (331)
                      .+++++++++++.-+.-    .++++........+.- ++..|... .   ..|+.-.++++||+-.+
T Consensus        80 ~l~~~~ii~d~~Svk~~----~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~  143 (279)
T PRK07417         80 ALPPEAIVTDVGSVKAP----IVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENT  143 (279)
T ss_pred             hCCCCcEEEeCcchHHH----HHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCC
Confidence            78999999999875532    2333332211111111 22222110 0   13777889999997654

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=98.81  E-value=9.1e-08  Score=89.47  Aligned_cols=131  Identities=27%  Similarity=0.331  Sum_probs=90.2

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEE--CCCCCC------CCcc--ccCCH-HhhhcCCCEEEEeccCChhhhhhc
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYN--SRSKKP------VPYA--FYSNV-CELAANSDALIICCALTDQTRRMI  229 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~--~~~~~~------~~~~--~~~~l-~ell~~aDiV~l~~P~t~~t~~li  229 (331)
                      .++|+|+|+|.||+.+|+.++..|..+.++  +++...      .+..  ...+. .+...++|+|++++|-. .|..++
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~l   81 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEVL   81 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHHH
Confidence            468999999999999999999999977544  444322      1221  11233 67788899999999954 566666


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCC----CCccccCCceEEcCCCCCC
Q 020073          230 NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYV----PKELLELDNVVLQPHRAVF  299 (331)
Q Consensus       230 ~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~----~~~L~~~~nvilTPH~a~~  299 (331)
                       ++....+|+|++++++++-+----+++.+.+..+.      .+-..-|.-    ..+++....+++||.-...
T Consensus        82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~------~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~  148 (279)
T COG0287          82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV------RFVGGHPMFGPEADAGLFENAVVVLTPSEGTE  148 (279)
T ss_pred             -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC------eeEecCCCCCCcccccccCCCEEEEcCCCCCC
Confidence             44555799999999999877555555555553322      222334532    2368888999999965443

>PRK06545 prephenate dehydrogenase; Validated

Probab=98.78  E-value=7e-08  Score=93.58  Aligned_cols=129  Identities=23%  Similarity=0.242  Sum_probs=88.0

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C--Cc--cccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V--PY--AFYSNVCELAANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~--~~--~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      ++|+|||+|.||+++|+.++..|++|.++++++..      .  +.  ....++++++++||+|++|+|.. .+..++. 
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl~-   78 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALLA-   78 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHHH-
Confidence            47999999999999999999999988888776543      1  11  12356788999999999999964 5677763 


Q ss_pred             HHHh-cCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCC----------CccccCCceEEcCCCCC
Q 020073          232 EVML-ALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP----------KELLELDNVVLQPHRAV  298 (331)
Q Consensus       232 ~~l~-~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~----------~~L~~~~nvilTPH~a~  298 (331)
                      +... .+++++++++++.-+.-..+++.+.+.. ...  .++.   -|...          ..|+.....++||+-..
T Consensus        79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~-~~~--~ig~---HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~  150 (359)
T PRK06545         79 ELADLELKPGVIVTDVGSVKGAILAEAEALLGD-LIR--FVGG---HPMAGSHKSGVAAARADLFENAPWVLTPDDHT  150 (359)
T ss_pred             HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC-CCe--EEee---CCcCcCchhhHHHhcHHHHCCCcEEEecCCCC
Confidence            3333 4789999999998775444444433221 222  2222   13211          24777788899996643

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.75  E-value=5.4e-08  Score=91.42  Aligned_cols=109  Identities=14%  Similarity=0.149  Sum_probs=80.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----C---------C-----------------ccccCCHHhhhcC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----V---------P-----------------YAFYSNVCELAAN  211 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~---------~-----------------~~~~~~l~ell~~  211 (331)
                      ++|+|||+|.||..+|..+...|++|++||+++..    .         +                 .....++.+.+++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            57999999999999999999999999999987543    0         0                 0123567889999


Q ss_pred             CCEEEEeccCChhhhhhccHHHHhcCCCCcEE-EEcCCCCccCHHHHHHHHHhCCceEEEeecC
Q 020073          212 SDALIICCALTDQTRRMINREVMLALGKEGII-VNVGRGAVIDENEMVRCLVRGEIAGAGLDVF  274 (331)
Q Consensus       212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~l-In~srg~~vd~~al~~aL~~~~i~ga~lDV~  274 (331)
                      ||+|+.|+|...+.+..+-.+..+.+++++++ +|+|.-.   ...+.+.++. .-+..++..|
T Consensus        82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~---~~~l~~~~~~-~~r~~g~h~~  141 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMS---PTEIASFTKR-PERVIAMHFF  141 (288)
T ss_pred             CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCC-cccEEEEecC
Confidence            99999999988776655545566678999876 7887644   3556665533 2233466655

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.75  E-value=1.7e-08  Score=98.13  Aligned_cols=90  Identities=17%  Similarity=0.231  Sum_probs=73.2

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCc------cccCCHHhhhcCCCEEEEeccCC-h
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPY------AFYSNVCELAANSDALIICCALT-D  223 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~------~~~~~l~ell~~aDiV~l~~P~t-~  223 (331)
                      .+.++++.|+|+|.+|+.+++.++.+|++|.++|++...       .+.      ....++.+.++++|+|+.+++.+ .
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~  243 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA  243 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence            367888999999999999999999999999999987543       111      01135778889999999998653 2


Q ss_pred             hhhhhccHHHHhcCCCCcEEEEcC
Q 020073          224 QTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       224 ~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      .+..+++++.++.||+++++||++
T Consensus       244 ~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       244 KAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             CCCcCcCHHHHhcCCCCCEEEEEe
Confidence            356689999999999999999997

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.74  E-value=6.3e-08  Score=92.31  Aligned_cols=100  Identities=14%  Similarity=0.156  Sum_probs=79.6

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------------C----Cc-----cccCCHHhhhcCCCEE
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------------V----PY-----AFYSNVCELAANSDAL  215 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------------~----~~-----~~~~~l~ell~~aDiV  215 (331)
                      ++|+|||.|.||..+|..+...|++|++||++++.                 .    +.     ....++++++++||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            68999999999999999999999999999987542                 0    00     2245788999999999


Q ss_pred             EEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073          216 IICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR  263 (331)
Q Consensus       216 ~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~  263 (331)
                      +-|+|.+.+.+.-+-++.-+.++++++ |.++..+ +...++.+.+..
T Consensus        88 iEavpE~l~vK~~lf~~l~~~~~~~aI-laSnTS~-l~~s~la~~~~~  133 (321)
T PRK07066         88 QESAPEREALKLELHERISRAAKPDAI-IASSTSG-LLPTDFYARATH  133 (321)
T ss_pred             EECCcCCHHHHHHHHHHHHHhCCCCeE-EEECCCc-cCHHHHHHhcCC
Confidence            999999999888887888888999985 4444443 466677777643

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.73  E-value=8.4e-08  Score=94.96  Aligned_cols=128  Identities=17%  Similarity=0.180  Sum_probs=90.5

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCcc----------------ccCCHHhhhcCCCEEEEecc
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYA----------------FYSNVCELAANSDALIICCA  220 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~----------------~~~~l~ell~~aDiV~l~~P  220 (331)
                      .+|||||+|.||..+|..+.. |++|++||+++.+     .+..                ...+..+.+++||++++|+|
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp   85 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP   85 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence            679999999999999999877 7999999998765     1111                12333457899999999999


Q ss_pred             CC------hhhhhhc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC--CceEEEee----cCCCCCCCCC----
Q 020073          221 LT------DQTRRMI--NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG--EIAGAGLD----VFENEPYVPK----  282 (331)
Q Consensus       221 ~t------~~t~~li--~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~--~i~ga~lD----V~~~EP~~~~----  282 (331)
                      ..      +....+.  .....+.+++|.++|+.|.-..-..+.+++.+...  .+. + .|    +|.+||..+.    
T Consensus        86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~-~-~~~~~~~~~PE~v~~G~a~~  163 (425)
T PRK15182         86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMT-F-NQDFYVGYSPERINPGDKKH  163 (425)
T ss_pred             CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCC-c-CCCeeEeeCCCcCCCCcccc
Confidence            65      3335555  34566788999999999998887777654444332  221 1 33    4667887542    


Q ss_pred             ccccCCceEE
Q 020073          283 ELLELDNVVL  292 (331)
Q Consensus       283 ~L~~~~nvil  292 (331)
                      .+..+|.|+.
T Consensus       164 ~~~~~~riv~  173 (425)
T PRK15182        164 RLTNIKKITS  173 (425)
T ss_pred             cccCCCeEEE
Confidence            4777788854

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.73  E-value=1.7e-07  Score=86.83  Aligned_cols=98  Identities=20%  Similarity=0.318  Sum_probs=75.2

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC----EEEEE-CCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC----NVLYN-SRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~-~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~  230 (331)
                      .+|||||+|.||+++++.|...|+    +|+++ +|++..      .+.....+..+++++||+|++|+| ......++ 
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl-   78 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL-   78 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence            369999999999999999998887    88888 887654      233345678888999999999996 55667766 


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073          231 REVMLALGKEGIIVNVGRGAVIDENEMVRCLVR  263 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~  263 (331)
                      .+....++++.++|++.-|  +..+.+.+.+..
T Consensus        79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~  109 (266)
T PLN02688         79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAGG  109 (266)
T ss_pred             HHHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence            3455667889999988665  466677766543

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.73  E-value=2.3e-07  Score=89.99  Aligned_cols=122  Identities=18%  Similarity=0.210  Sum_probs=85.4

Q ss_pred             CCCceEEEEec-ChHHHHHHHHHhh-CCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccH--HHH
Q 020073          159 LGGKRVGIVGL-GNIGLQVAKRLQA-FGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINR--EVM  234 (331)
Q Consensus       159 l~g~~vgIiG~-G~IG~~~A~~l~~-~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~--~~l  234 (331)
                      +.-.+|+|||+ |.||+.+|+.++. +|.+|+++|+...     ...++.+.+++||+|++|+|.. .+..++.+  ...
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----~~~~~~~~v~~aDlVilavPv~-~~~~~l~~l~~~~   75 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----GSLDPATLLQRADVLIFSAPIR-HTAALIEEYVALA   75 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----ccCCHHHHhcCCCEEEEeCCHH-HHHHHHHHHhhhh
Confidence            34578999999 9999999999995 5889999998522     2346788899999999999954 45555532  111


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCC---CccccCCceEEcCC
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP---KELLELDNVVLQPH  295 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~---~~L~~~~nvilTPH  295 (331)
                      ..++++++++++++-+-    ..++++....     .++-..-|.--   ..+++..++++||.
T Consensus        76 ~~l~~~~iVtDVgSvK~----~i~~~~~~~~-----~~fVG~HPMaG~E~s~lf~g~~~iltp~  130 (370)
T PRK08818         76 GGRAAGQLWLDVTSIKQ----APVAAMLASQ-----AEVVGLHPMTAPPKSPTLKGRVMVVCEA  130 (370)
T ss_pred             cCCCCCeEEEECCCCcH----HHHHHHHhcC-----CCEEeeCCCCCCCCCcccCCCeEEEeCC
Confidence            34799999999998773    2222222221     12334455421   25788889999996

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.72  E-value=1.5e-07  Score=92.94  Aligned_cols=103  Identities=16%  Similarity=0.217  Sum_probs=75.9

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCc--cccCCHHhh---------------hcCCCEEEEec
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPY--AFYSNVCEL---------------AANSDALIICC  219 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~--~~~~~l~el---------------l~~aDiV~l~~  219 (331)
                      ++|+|||+|.||..+|..|...|++|++||+++..     .+.  .....++++               +++||+|++|+
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v   83 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV   83 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence            68999999999999999999999999999987764     111  112234444               33799999999


Q ss_pred             cCC------hhhhhhc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073          220 ALT------DQTRRMI--NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG  264 (331)
Q Consensus       220 P~t------~~t~~li--~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~  264 (331)
                      |..      +....+.  -......+++|+++|+.|....=..+.+...+.+.
T Consensus        84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~  136 (415)
T PRK11064         84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA  136 (415)
T ss_pred             CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            964      1222222  24566778999999999998877777777766653

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.72  E-value=1.3e-08  Score=79.45  Aligned_cols=84  Identities=27%  Similarity=0.430  Sum_probs=62.0

Q ss_pred             eEEEEecChHHHHHHHHHhhCC---CEEE-EECCCCCC-------CCccccC-CHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFG---CNVL-YNSRSKKP-------VPYAFYS-NVCELAANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G---~~V~-~~~~~~~~-------~~~~~~~-~l~ell~~aDiV~l~~P~t~~t~~li~  230 (331)
                      ||||||+|+||+++++.+...|   .+|. +++|++++       .+..... +..+++++||+|++|+|.. ....++ 
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~-~~~~v~-   78 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ-QLPEVL-   78 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG-GHHHHH-
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH-HHHHHH-
Confidence            6999999999999999999999   8998 55888764       2222233 7899999999999999844 334444 


Q ss_pred             HHHHhcCCCCcEEEEcCCC
Q 020073          231 REVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~srg  249 (331)
                      ++. ....++.++|++.-|
T Consensus        79 ~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   79 SEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             HHH-HHHHTTSEEEEESTT
T ss_pred             HHH-hhccCCCEEEEeCCC
Confidence            333 556788999988654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.72  E-value=2.6e-07  Score=90.05  Aligned_cols=91  Identities=21%  Similarity=0.276  Sum_probs=71.2

Q ss_pred             CCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCC
Q 020073          160 GGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALG  238 (331)
Q Consensus       160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk  238 (331)
                      ..++|+||| +|.||+.+|+.|+..|.+|.+|++..       ..+.++++++||+|++|+|... +..++ ++. ..++
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~-------~~~~~~~~~~aDlVilavP~~~-~~~~~-~~l-~~l~  166 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD-------WDRAEDILADAGMVIVSVPIHL-TEEVI-ARL-PPLP  166 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc-------chhHHHHHhcCCEEEEeCcHHH-HHHHH-HHH-hCCC
Confidence            458899999 99999999999999999999999753       1367788999999999999764 45556 334 4489


Q ss_pred             CCcEEEEcCCCCccCHHHHHHH
Q 020073          239 KEGIIVNVGRGAVIDENEMVRC  260 (331)
Q Consensus       239 ~ga~lIn~srg~~vd~~al~~a  260 (331)
                      +|++++++++.+..--.++.+.
T Consensus       167 ~~~iv~Dv~SvK~~~~~~~~~~  188 (374)
T PRK11199        167 EDCILVDLTSVKNAPLQAMLAA  188 (374)
T ss_pred             CCcEEEECCCccHHHHHHHHHh
Confidence            9999999988654333444443

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.70  E-value=4.8e-08  Score=92.37  Aligned_cols=97  Identities=24%  Similarity=0.335  Sum_probs=80.6

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHH
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      +.||++.|.|||..|+.+|+++++.|++|+++.-.+-+     ........++++...+|+++.++-    .++.|..++
T Consensus       207 iaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~TG----nkdVi~~eh  282 (420)
T COG0499         207 LAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTATG----NKDVIRKEH  282 (420)
T ss_pred             ecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEccC----CcCccCHHH
Confidence            79999999999999999999999999999998766543     222334679999999999998753    567999999


Q ss_pred             HhcCCCCcEEEEcCCCCc-cCHHHHHH
Q 020073          234 MLALGKEGIIVNVGRGAV-IDENEMVR  259 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~-vd~~al~~  259 (331)
                      |..||+|+++-|.+.=.+ +|-..|.+
T Consensus       283 ~~~MkDgaIl~N~GHFd~EI~~~~L~~  309 (420)
T COG0499         283 FEKMKDGAILANAGHFDVEIDVAGLEE  309 (420)
T ss_pred             HHhccCCeEEecccccceeccHHHHHH
Confidence            999999999999987555 56666543

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.69  E-value=6.4e-08  Score=90.96  Aligned_cols=131  Identities=18%  Similarity=0.198  Sum_probs=92.6

Q ss_pred             CccCCCceEEEEecC-hHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGLG-NIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.||+|+|||.| .||+.+|.+|...|++|+++++..        .++.++.++||+|+++++..    +++.+.. 
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t--------~~l~e~~~~ADIVIsavg~~----~~v~~~~-  220 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS--------TDAKALCRQADIVVAAVGRP----RLIDADW-  220 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC--------CCHHHHHhcCCEEEEecCCh----hcccHhh-
Confidence            447999999999996 999999999999999999997643        37999999999999999754    3566555 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhC--CceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRG--EIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAV  312 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~--~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~  312 (331)
                        +|+|+++||+|--.+.         .+|  ++   .-||-..+-      .. .--.+||=-||.-.-+..-+.+.++
T Consensus       221 --ik~GaiVIDvgin~~~---------~~g~~kl---~GDvdf~~~------~~-~a~~iTPVPGGVGp~Tva~L~~N~~  279 (301)
T PRK14194        221 --LKPGAVVIDVGINRID---------DDGRSRL---VGDVDFDSA------LP-VVSAITPVPGGVGPMTIAFLMKNTV  279 (301)
T ss_pred             --ccCCcEEEEecccccC---------CCCCcce---ecccchHHH------Hh-hcceecCCCCchhHHHHHHHHHHHH
Confidence              7999999999954431         123  33   456632111      11 1235888777766655555555555


Q ss_pred             HHHHHHHc
Q 020073          313 GNLEALFS  320 (331)
Q Consensus       313 ~nl~~~~~  320 (331)
                      +..+++..
T Consensus       280 ~a~~~~~~  287 (301)
T PRK14194        280 TAARLQAH  287 (301)
T ss_pred             HHHHHHHH
Confidence            55555543

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.67  E-value=3.6e-07  Score=85.79  Aligned_cols=135  Identities=16%  Similarity=0.192  Sum_probs=91.4

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----C--------------C-------------ccccCCHHhhhc
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----V--------------P-------------YAFYSNVCELAA  210 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~--------------~-------------~~~~~~l~ell~  210 (331)
                      ++|+|||.|.||..+|..+...|.+|+.++++.+.    .              .             .....+++++++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            57999999999999999999899999999987542    0              0             012457888899


Q ss_pred             CCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCce
Q 020073          211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNV  290 (331)
Q Consensus       211 ~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nv  290 (331)
                      .||+|+.|+|...+.+.-+-++.-+.++++++++..+++-  ....+.+.+.... +..++-.       ..|.+..+.|
T Consensus        84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~~~~~~~-r~vg~Hf-------~~p~~~~~lv  153 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTL--LPSQFAEATGRPE-KFLALHF-------ANEIWKNNTA  153 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccC--CHHHHHhhcCCcc-cEEEEcC-------CCCCCcCCeE
Confidence            9999999999776555544455666688888885444433  4456666654322 2233321       2346677888


Q ss_pred             EEcCCCCCCcHHHHHHH
Q 020073          291 VLQPHRAVFTSECFVDL  307 (331)
Q Consensus       291 ilTPH~a~~t~~~~~~~  307 (331)
                      .+.|+-.. +.++...+
T Consensus       154 evv~~~~t-~~~~~~~~  169 (287)
T PRK08293        154 EIMGHPGT-DPEVFDTV  169 (287)
T ss_pred             EEeCCCCC-CHHHHHHH
Confidence            88886553 33444433

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.62  E-value=1.4e-07  Score=88.11  Aligned_cols=125  Identities=17%  Similarity=0.183  Sum_probs=89.9

Q ss_pred             CccCCCceEEEEecChH-HHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGLGNI-GLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.|+++.|||.|.+ |+.+|..|...|++|+++...        ..++.+.+++||+|++++|    +.++++.+. 
T Consensus       153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------t~~l~~~~~~ADIVV~avG----~~~~i~~~~-  219 (285)
T PRK14189        153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------TRDLAAHTRQADIVVAAVG----KRNVLTADM-  219 (285)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------CCCHHHHhhhCCEEEEcCC----CcCccCHHH-
Confidence            34789999999999999 999999999999999887532        2478999999999999998    456898854 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN  314 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n  314 (331)
                        +|+|+++||+|--.+.          +|++   .-||-..+-      .+ .--.+||=-||.-.-+..-+.+.+++-
T Consensus       220 --ik~gavVIDVGin~~~----------~gkl---~GDVd~~~v------~~-~a~~iTPVPGGVGp~T~a~Ll~N~~~a  277 (285)
T PRK14189        220 --VKPGATVIDVGMNRDD----------AGKL---CGDVDFAGV------KE-VAGYITPVPGGVGPMTITMLLVNTIEA  277 (285)
T ss_pred             --cCCCCEEEEccccccC----------CCCe---eCCccHHHH------Hh-hceEecCCCCCchHHHHHHHHHHHHHH
Confidence              7999999999965532          2554   456631111      11 123689977776655444444444443


Q ss_pred             H
Q 020073          315 L  315 (331)
Q Consensus       315 l  315 (331)
                      .
T Consensus       278 ~  278 (285)
T PRK14189        278 A  278 (285)
T ss_pred             H
Confidence            3

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.62  E-value=1.6e-07  Score=81.51  Aligned_cols=115  Identities=22%  Similarity=0.296  Sum_probs=85.8

Q ss_pred             ccCCCceEEEEecChH-HHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073          157 SKLGGKRVGIVGLGNI-GLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML  235 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~  235 (331)
                      .++.|+++.|||.|.+ |..+|+.|...|.+|++.+|+.        .++.+.+.++|+|+.+++..    ++|+++.  
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------~~l~~~l~~aDiVIsat~~~----~ii~~~~--  105 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------KNLKEHTKQADIVIVAVGKP----GLVKGDM--  105 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------hhHHHHHhhCCEEEEcCCCC----ceecHHH--
Confidence            3689999999999996 8889999999999999988752        46889999999999997643    2788876  


Q ss_pred             cCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHH
Q 020073          236 ALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSEC  303 (331)
Q Consensus       236 ~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~  303 (331)
                       ++++.++||+|...-+|       ..++++.   -|| ..     +..... ...+||=-||...-+
T Consensus       106 -~~~~~viIDla~prdvd-------~~~~~~~---G~~-d~-----~~~~~~-~~~~~~~pggvgp~t  155 (168)
T cd01080         106 -VKPGAVVIDVGINRVPD-------KSGGKLV---GDV-DF-----ESAKEK-ASAITPVPGGVGPMT  155 (168)
T ss_pred             -ccCCeEEEEccCCCccc-------ccCCCee---CCc-CH-----HHHHhh-ccCcCCCCCcChHHH
Confidence             58899999999998888       4555554   233 11     111122 445777666665533

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.61  E-value=3.6e-07  Score=81.47  Aligned_cols=104  Identities=20%  Similarity=0.317  Sum_probs=78.9

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccccCCHHhhhc-CCCEEEEeccCChhhhh
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAFYSNVCELAA-NSDALIICCALTDQTRR  227 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~~~~l~ell~-~aDiV~l~~P~t~~t~~  227 (331)
                      +.+++|++++|+|+|+||+.+|+.|..+|++|+++|++...       .+... .+.++++. ++|+++.|..     .+
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~-v~~~~l~~~~~Dv~vp~A~-----~~   96 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATV-VAPEEIYSVDADVFAPCAL-----GG   96 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEE-EcchhhccccCCEEEeccc-----cc
Confidence            34689999999999999999999999999999999987653       12221 23455554 7998886654     35


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          228 MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       228 li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      +|+++.++.|+. .+++..+-+.+-| ..-.+.|++..+.
T Consensus        97 ~I~~~~~~~l~~-~~v~~~AN~~~~~-~~~~~~L~~~Gi~  134 (200)
T cd01075          97 VINDDTIPQLKA-KAIAGAANNQLAD-PRHGQMLHERGIL  134 (200)
T ss_pred             ccCHHHHHHcCC-CEEEECCcCccCC-HhHHHHHHHCCCE
Confidence            888888888874 5778888888776 5566777777765

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK08507 prephenate dehydrogenase; Validated

Probab=98.61  E-value=6e-07  Score=83.76  Aligned_cols=126  Identities=17%  Similarity=0.248  Sum_probs=80.2

Q ss_pred             eEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC------CCcc-ccCCHHhhhcCCCEEEEeccCChhhhhhccHHH
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP------VPYA-FYSNVCELAANSDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~------~~~~-~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      +|+|||+|.||+.+|+.|+..|.  +|+++++++..      .+.. ...+..++. ++|+|++|+|... +...+ .+.
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~-~~~~~-~~l   78 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA-IIEIL-PKL   78 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH-HHHHH-HHH
Confidence            69999999999999999998775  78999987643      1221 234667765 4999999999653 44455 345


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCC---C---CCCCC-ccccCCceEEcCCCC
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFEN---E---PYVPK-ELLELDNVVLQPHRA  297 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~---E---P~~~~-~L~~~~nvilTPH~a  297 (331)
                      .. +++++++++++.-    ...+.+.+.... .+..++....   |   |.... .+++-..++++|.-+
T Consensus        79 ~~-l~~~~iv~d~gs~----k~~i~~~~~~~~-~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~  143 (275)
T PRK08507         79 LD-IKENTTIIDLGST----KAKIIESVPKHI-RKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEK  143 (275)
T ss_pred             hc-cCCCCEEEECccc----hHHHHHHHHHhc-CCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCC
Confidence            55 8899999997652    344555555431 1112222221   1   21111 366666788888543

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.60  E-value=3.1e-07  Score=77.74  Aligned_cols=104  Identities=20%  Similarity=0.245  Sum_probs=77.8

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCC-CEEEEECCCCCC-------CCc----cccCCHHhhhcCCCEEEEeccCChh-
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFG-CNVLYNSRSKKP-------VPY----AFYSNVCELAANSDALIICCALTDQ-  224 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~-------~~~----~~~~~l~ell~~aDiV~l~~P~t~~-  224 (331)
                      ++.+++++|+|+|.||+.+++.+...| .+|.+++++.+.       ...    ....+..++++++|+|++++|.... 
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~   95 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP   95 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence            466889999999999999999999886 689999987654       111    1245677888999999999997753 


Q ss_pred             hhh-hccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 020073          225 TRR-MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       225 t~~-li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i  266 (331)
                      ... .+...   .++++.+++|++..+...  .+.+.+++..+
T Consensus        96 ~~~~~~~~~---~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~  133 (155)
T cd01065          96 GDELPLPPS---LLKPGGVVYDVVYNPLET--PLLKEARALGA  133 (155)
T ss_pred             CCCCCCCHH---HcCCCCEEEEcCcCCCCC--HHHHHHHHCCC
Confidence            222 23332   268999999998775443  77777777654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.60  E-value=5.3e-07  Score=84.84  Aligned_cols=109  Identities=21%  Similarity=0.272  Sum_probs=76.7

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC-----------------C-------------ccccCCHHhhhcC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV-----------------P-------------YAFYSNVCELAAN  211 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----------------~-------------~~~~~~l~ell~~  211 (331)
                      ++|+|||.|.||..+|..+...|++|++||++++..                 +             .....+++ .+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD   83 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence            679999999999999999999999999999875430                 1             01224554 5789


Q ss_pred             CCEEEEeccCChhhhhhccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHhCCceEEEeecCC
Q 020073          212 SDALIICCALTDQTRRMINREVMLALGKEGIIV-NVGRGAVIDENEMVRCLVRGEIAGAGLDVFE  275 (331)
Q Consensus       212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lI-n~srg~~vd~~al~~aL~~~~i~ga~lDV~~  275 (331)
                      ||+|+.|+|...+.+..+-++..+.++++++++ |+|.-.   ...+.+.+... -+..++-.|.
T Consensus        84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~~-~r~~g~h~~~  144 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDRP-ERFIGIHFMN  144 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCCc-ccEEEeeccC
Confidence            999999999887755544456667789999988 555433   34676665421 2223455544

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.59  E-value=8.5e-07  Score=83.02  Aligned_cols=99  Identities=16%  Similarity=0.216  Sum_probs=72.9

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC-----------------C-------------ccccCCHHhhhcC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV-----------------P-------------YAFYSNVCELAAN  211 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----------------~-------------~~~~~~l~ell~~  211 (331)
                      ++|+|||+|.||..+|..+...|.+|+++|++++..                 +             .....+.+ .+++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~   82 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD   82 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            579999999999999999999999999999765431                 0             01123444 4799


Q ss_pred             CCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073          212 SDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR  263 (331)
Q Consensus       212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~  263 (331)
                      ||+|+.|+|...+.+.-+-++.-+.++++++++....|  +....+.+.+..
T Consensus        83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~  132 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR  132 (282)
T ss_pred             CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence            99999999987776654445566678999988554444  556678787743

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.57  E-value=4.4e-07  Score=84.86  Aligned_cols=99  Identities=13%  Similarity=0.163  Sum_probs=73.7

Q ss_pred             CceEEEEecChHHHHHHHHHhhCC----CEEEEECCCCCC--------CCccccCCHHhhhcCCCEEEEeccCChhhhhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFG----CNVLYNSRSKKP--------VPYAFYSNVCELAANSDALIICCALTDQTRRM  228 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G----~~V~~~~~~~~~--------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~l  228 (331)
                      +++|+|||+|.||+++|+.|...|    .+|++++|+..+        .+.....+..+++.+||+|++|+|.. .....
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~-~~~~v   81 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPK-DVAEA   81 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHH-HHHHH
Confidence            468999999999999999998877    688999987532        13334557888899999999999844 44444


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073          229 INREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR  263 (331)
Q Consensus       229 i~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~  263 (331)
                      + .+....++++.++|++.-|-  ..+.+.+.+..
T Consensus        82 l-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~~  113 (279)
T PRK07679         82 L-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQK  113 (279)
T ss_pred             H-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCC
Confidence            4 34445578889999986553  56667766643

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.56  E-value=1.8e-07  Score=87.35  Aligned_cols=97  Identities=18%  Similarity=0.291  Sum_probs=74.7

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC----EEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC----NVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~  230 (331)
                      ++|||||+|+||+++++.|...|.    +|++++|+...       .+.....+..+++++||+|++|+| ......++ 
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl-   80 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI-   80 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH-
Confidence            579999999999999999987774    69999987654       122334577888999999999998 36666666 


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 020073          231 REVMLALGKEGIIVNVGRGAVIDENEMVRCLV  262 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~  262 (331)
                      .+.-..++++.++|++.-|  ++.+.|.+.+.
T Consensus        81 ~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~  110 (272)
T PRK12491         81 NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD  110 (272)
T ss_pred             HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence            3444556888999999877  46666776664

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.55  E-value=3e-07  Score=86.50  Aligned_cols=130  Identities=15%  Similarity=0.177  Sum_probs=88.1

Q ss_pred             ccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEEC-CCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          157 SKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNS-RSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       157 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~-~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      .++.||+++||| .|.||+.+|.+|...|+.|++++ ++.         ++++++++||+|+++++...    ++.+.. 
T Consensus       154 i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------~l~e~~~~ADIVIsavg~~~----~v~~~~-  219 (296)
T PRK14188        154 GDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------DLPAVCRRADILVAAVGRPE----MVKGDW-  219 (296)
T ss_pred             CCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------CHHHHHhcCCEEEEecCChh----hcchhe-
Confidence            368999999999 99999999999999999999995 542         58999999999999998653    455544 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN  314 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n  314 (331)
                        +|+|+++||+|--.+.+.+.     .+|+- ...-||-..+      . ...--.+||=-||.-.-+..-+.+.+++-
T Consensus       220 --lk~GavVIDvGin~~~~~~~-----~~g~~-~l~GDvd~~~------v-~~~a~~iTPVPGGVGp~T~a~L~~N~~~a  284 (296)
T PRK14188        220 --IKPGATVIDVGINRIPAPEK-----GEGKT-RLVGDVAFAE------A-AEVAGAITPVPGGVGPMTIACLLANTLTA  284 (296)
T ss_pred             --ecCCCEEEEcCCcccCCccc-----cCCCc-eeeCCCCHHH------H-HhhccEecCCCCChhHHHHHHHHHHHHHH
Confidence              89999999998544322000     11421 1345663111      1 11123689987876665544444444443


Q ss_pred             H
Q 020073          315 L  315 (331)
Q Consensus       315 l  315 (331)
                      .
T Consensus       285 ~  285 (296)
T PRK14188        285 A  285 (296)
T ss_pred             H
Confidence            3

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.54  E-value=4.1e-07  Score=86.97  Aligned_cols=97  Identities=22%  Similarity=0.196  Sum_probs=74.5

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C--------C------ccccCCHHhhhcCCCEEEEecc
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V--------P------YAFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~--------~------~~~~~~l~ell~~aDiV~l~~P  220 (331)
                      ..+|+|||+|.||..+|..|...|.+|.+|+|+++.      .        +      .....++.++++.+|+|++++|
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~   83 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP   83 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence            358999999999999999999999999999997542      1        1      1234578888999999999999


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCCc-cC--HHHHHHHHHh
Q 020073          221 LTDQTRRMINREVMLALGKEGIIVNVGRGAV-ID--ENEMVRCLVR  263 (331)
Q Consensus       221 ~t~~t~~li~~~~l~~mk~ga~lIn~srg~~-vd--~~al~~aL~~  263 (331)
                      .. .+     ++.++.++++.++|+++.|-- -+  ...+.+.+..
T Consensus        84 ~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~  123 (328)
T PRK14618         84 SK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF  123 (328)
T ss_pred             hH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence            66 33     445577899999999999732 22  4456666654

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.54  E-value=1.1e-06  Score=82.79  Aligned_cols=112  Identities=21%  Similarity=0.253  Sum_probs=78.5

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC------------Cc---------------------cccCCHHhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV------------PY---------------------AFYSNVCEL  208 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------------~~---------------------~~~~~l~el  208 (331)
                      ++|+|||+|.||..+|..+...|++|+++|++++..            +.                     ....++ +.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   82 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES   82 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence            589999999999999999999999999999876430            00                     011234 56


Q ss_pred             hcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCC
Q 020073          209 AANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENE  277 (331)
Q Consensus       209 l~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~E  277 (331)
                      +++||+|+.++|...+.+.-+-++.-+.+++++++++...|  +....+.+.+.. .-+..++.-|.+-
T Consensus        83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~-~~r~ig~hf~~P~  148 (291)
T PRK06035         83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER-KDRFIGMHWFNPA  148 (291)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC-cccEEEEecCCCc
Confidence            78999999999987654444434455567899999887777  455667777643 2223455444433

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.54  E-value=1.5e-06  Score=85.69  Aligned_cols=130  Identities=21%  Similarity=0.276  Sum_probs=85.9

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----C--------------------C-ccccCCHHhhhcCCCEEE
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----V--------------------P-YAFYSNVCELAANSDALI  216 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~--------------------~-~~~~~~l~ell~~aDiV~  216 (331)
                      +|+|||+|.||..+|..|...|++|++||++...     .                    + .....++.+++++||+|+
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvi   81 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVII   81 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEE
Confidence            6999999999999999999999999999987643     1                    1 122346788899999999


Q ss_pred             EeccCChh------hhhhc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHH-HHHhC-CceEEEeec---CCCCCCCCC-
Q 020073          217 ICCALTDQ------TRRMI--NREVMLALGKEGIIVNVGRGAVIDENEMVR-CLVRG-EIAGAGLDV---FENEPYVPK-  282 (331)
Q Consensus       217 l~~P~t~~------t~~li--~~~~l~~mk~ga~lIn~srg~~vd~~al~~-aL~~~-~i~ga~lDV---~~~EP~~~~-  282 (331)
                      +|+|....      ...+.  -....+.+++|.++|+.|.-..=..+.+.+ .+++. .+. .+.|.   +.+|...+. 
T Consensus        82 i~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~-~~~d~~v~~~Pe~~~~G~  160 (411)
T TIGR03026        82 ICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLK-LGEDFYLAYNPEFLREGN  160 (411)
T ss_pred             EEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCC-CCCCceEEECCCcCCCCC
Confidence            99996532      11222  134556789999999998655545556654 44441 111 13342   244443222 


Q ss_pred             ---ccccCCceEEc
Q 020073          283 ---ELLELDNVVLQ  293 (331)
Q Consensus       283 ---~L~~~~nvilT  293 (331)
                         .++..+.+++.
T Consensus       161 ~~~~~~~~~~iv~G  174 (411)
T TIGR03026       161 AVHDLLNPDRIVGG  174 (411)
T ss_pred             hhhhhcCCCEEEEe
Confidence               35667777766

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.53  E-value=8e-08  Score=80.29  Aligned_cols=90  Identities=21%  Similarity=0.289  Sum_probs=69.2

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCE-EEEECCCCCC-------C-C----ccccCCHHhhhcCCCEEEEeccCChh
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSKKP-------V-P----YAFYSNVCELAANSDALIICCALTDQ  224 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~~~-------~-~----~~~~~~l~ell~~aDiV~l~~P~t~~  224 (331)
                      +++|+++.|||.|.+|+.++..|...|++ |++++|+.++       . +    ...+.++.+.+.++|+|+.++|....
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~   88 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP   88 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence            68999999999999999999999999996 9999998654       1 1    12345677889999999999876533


Q ss_pred             hhhhccHHHHhcCCCCc-EEEEcCCCC
Q 020073          225 TRRMINREVMLALGKEG-IIVNVGRGA  250 (331)
Q Consensus       225 t~~li~~~~l~~mk~ga-~lIn~srg~  250 (331)
                         .+.++.++..++.. ++++++...
T Consensus        89 ---~i~~~~~~~~~~~~~~v~Dla~Pr  112 (135)
T PF01488_consen   89 ---IITEEMLKKASKKLRLVIDLAVPR  112 (135)
T ss_dssp             ---SSTHHHHTTTCHHCSEEEES-SS-
T ss_pred             ---ccCHHHHHHHHhhhhceeccccCC
Confidence               78888887665543 788886543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.52  E-value=3.3e-07  Score=85.54  Aligned_cols=103  Identities=20%  Similarity=0.251  Sum_probs=76.9

Q ss_pred             CCceEEEEecChHHHHHHHHHhh--CCCEEE-EECCCCCC-------CC-ccccCCHHhhhcCCCEEEEeccCChhhhhh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQA--FGCNVL-YNSRSKKP-------VP-YAFYSNVCELAANSDALIICCALTDQTRRM  228 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~--~G~~V~-~~~~~~~~-------~~-~~~~~~l~ell~~aDiV~l~~P~t~~t~~l  228 (331)
                      ...+|||||+|.||+.+++.+..  .++++. +++++++.       .+ ...+.++++++.++|+|++|+|....  .-
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h--~e   82 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL--RA   82 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH--HH
Confidence            35789999999999999999985  478876 67876543       12 13457899999999999999996532  22


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          229 INREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       229 i~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      +....   ++.|.-++..+.|.+.+.++|.++.+++...
T Consensus        83 ~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~  118 (271)
T PRK13302         83 IVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQNGGQ  118 (271)
T ss_pred             HHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence            22333   4667766778899888889999998886643

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.50  E-value=5.6e-07  Score=84.59  Aligned_cols=111  Identities=19%  Similarity=0.249  Sum_probs=79.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------------CCc-------------cccCCHHhhhcC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------------VPY-------------AFYSNVCELAAN  211 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------------~~~-------------~~~~~l~ell~~  211 (331)
                      ++|||||.|.||..+|..+...|++|+.+|++++.                 .+.             ....++ +.+++
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~   84 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD   84 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence            48999999999999999999999999999988653                 000             023456 56899


Q ss_pred             CCEEEEeccCChhhhhhccHHHHhcC-CCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCC
Q 020073          212 SDALIICCALTDQTRRMINREVMLAL-GKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFEN  276 (331)
Q Consensus       212 aDiV~l~~P~t~~t~~li~~~~l~~m-k~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~  276 (331)
                      ||+|+-|+|.+.+.+.-+-+..-+.+ ++++++++.+.+-.+.  ++..++.. .=+..++..|.+
T Consensus        85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~--~la~~~~~-~~r~~g~hf~~P  147 (286)
T PRK07819         85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIM--KLAAATKR-PGRVLGLHFFNP  147 (286)
T ss_pred             CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhcCC-CccEEEEecCCC
Confidence            99999999999998887755443444 8899998877665444  34444432 222346666654

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.50  E-value=8e-07  Score=80.02  Aligned_cols=111  Identities=21%  Similarity=0.261  Sum_probs=93.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhh---hcCCCEEEEeccCChhhhhhccHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCEL---AANSDALIICCALTDQTRRMINRE  232 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~el---l~~aDiV~l~~P~t~~t~~li~~~  232 (331)
                      +++|.||+|+||..+++++..-|.+|++||+++..      .+.....+++++   |....+|-+++|...-|...| .+
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~   79 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD   79 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence            46899999999999999999999999999998765      233344566665   567899999999998888877 55


Q ss_pred             HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCC
Q 020073          233 VMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE  275 (331)
Q Consensus       233 ~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~  275 (331)
                      .-..|.+|-++|+-+-..-=|.....+.|..+.|.  -+||-.
T Consensus        80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GT  120 (300)
T COG1023          80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGT  120 (300)
T ss_pred             HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccC
Confidence            66779999999999998888888889999999996  688743

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.50  E-value=1.6e-06  Score=87.67  Aligned_cols=100  Identities=16%  Similarity=0.167  Sum_probs=74.0

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC-------------------------C-ccccCCHHhhhcCCCEE
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV-------------------------P-YAFYSNVCELAANSDAL  215 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-------------------------~-~~~~~~l~ell~~aDiV  215 (331)
                      ++|||||+|.||..+|..+...|++|++||+++...                         + .....++.+++++||+|
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V   84 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI   84 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence            479999999999999999999999999999876430                         0 12345788999999999


Q ss_pred             EEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073          216 IICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR  263 (331)
Q Consensus       216 ~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~  263 (331)
                      +.++|...+.+.-+-++.-+.++++++| .++..++ ....+.+.+..
T Consensus        85 ieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~  130 (495)
T PRK07531         85 QESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTH  130 (495)
T ss_pred             EEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCC
Confidence            9999988776664434444556777765 4444443 35577776644

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.49  E-value=1.9e-06  Score=81.83  Aligned_cols=126  Identities=17%  Similarity=0.139  Sum_probs=80.8

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------------CC-------------ccccCCHHhhhcC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------------VP-------------YAFYSNVCELAAN  211 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------------~~-------------~~~~~~l~ell~~  211 (331)
                      ++|+|||+|.||..+|..+...|.+|++||+++..                 .+             .....++.+++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            47999999999999999999999999999998632                 01             0234678889999


Q ss_pred             CCEEEEeccCChhhhhhccHHHHhcC-CCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCce
Q 020073          212 SDALIICCALTDQTRRMINREVMLAL-GKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNV  290 (331)
Q Consensus       212 aDiV~l~~P~t~~t~~li~~~~l~~m-k~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nv  290 (331)
                      ||+|+.|+|...+...-+-.+ ++.+ ++..++. .+.. ......+.+.+.....  ...|-|-+-|      +-.+=|
T Consensus        83 ad~Vi~avpe~~~~k~~~~~~-l~~~~~~~~ii~-ssts-~~~~~~la~~~~~~~~--~~~~hp~~p~------~~~~lv  151 (308)
T PRK06129         83 ADYVQESAPENLELKRALFAE-LDALAPPHAILA-SSTS-ALLASAFTEHLAGRER--CLVAHPINPP------YLIPVV  151 (308)
T ss_pred             CCEEEECCcCCHHHHHHHHHH-HHHhCCCcceEE-EeCC-CCCHHHHHHhcCCccc--EEEEecCCCc------ccCceE
Confidence            999999999875544433233 3444 4444444 3333 3446667777754332  3344443311      111235


Q ss_pred             EEcCCCCC
Q 020073          291 VLQPHRAV  298 (331)
Q Consensus       291 ilTPH~a~  298 (331)
                      .++|+-++
T Consensus       152 eiv~~~~t  159 (308)
T PRK06129        152 EVVPAPWT  159 (308)
T ss_pred             EEeCCCCC
Confidence            67776554

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.49  E-value=1.5e-06  Score=91.79  Aligned_cols=130  Identities=19%  Similarity=0.277  Sum_probs=90.6

Q ss_pred             ceEEEEecChHHHHHHHHHhhCC--CEEEEECCCCCC------CCcc--ccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFG--CNVLYNSRSKKP------VPYA--FYSNVCELAANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~~------~~~~--~~~~l~ell~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      ++|+|||+|.||+++++.++..|  .+|++++++...      .+..  ...++.+++.++|+|++|+|.. .+..++ +
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~   81 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A   81 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence            68999999999999999999888  489999988654      1221  2346788899999999999954 455554 3


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCC----------CCCccccCCceEEcCCCCC
Q 020073          232 EVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPY----------VPKELLELDNVVLQPHRAV  298 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~----------~~~~L~~~~nvilTPH~a~  298 (331)
                      +....++++.++++++..+-.-.+++.+.+....+     .+..+-|.          ...+|+.-.+++++|+..+
T Consensus        82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~-----r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~  153 (735)
T PRK14806         82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPA-----GFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET  153 (735)
T ss_pred             HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCC-----eEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence            34455788999999998664444555555543222     22223332          1125888889999997654

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.48  E-value=1e-06  Score=83.55  Aligned_cols=98  Identities=12%  Similarity=0.176  Sum_probs=69.5

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----C------C--------------ccccCCHHhhhcCCCEEE
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----V------P--------------YAFYSNVCELAANSDALI  216 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~------~--------------~~~~~~l~ell~~aDiV~  216 (331)
                      ++|+|||+|.||..+|..+...|++|++++++...     .      +              .....++.+++++||+|+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            57999999999999999999999999999986543     0      0              012346778899999999


Q ss_pred             EeccCChh-hhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 020073          217 ICCALTDQ-TRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLV  262 (331)
Q Consensus       217 l~~P~t~~-t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~  262 (331)
                      +|+|...+ ...++ ++.-..++++++++....|  +....+.+.+.
T Consensus        85 ~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~  128 (311)
T PRK06130         85 EAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSG--LPITAIAQAVT  128 (311)
T ss_pred             EeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence            99997754 33444 3333345777776544444  33557777764

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.44  E-value=1.9e-07  Score=77.22  Aligned_cols=103  Identities=21%  Similarity=0.335  Sum_probs=61.3

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEE-ECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLY-NSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~-~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      ...+|+|||.|++|+.+++.|...|+.|.. ++|+...       .+.....++++++.++|++++++|.+ ....+. +
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va-~   86 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVA-E   86 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHH-H
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHH-H
Confidence            346899999999999999999999999875 5676533       23334567889999999999999966 444433 3


Q ss_pred             HHHhc--CCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 020073          232 EVMLA--LGKEGIIVNVGRGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       232 ~~l~~--mk~ga~lIn~srg~~vd~~al~~aL~~~~i  266 (331)
                      +.-..  .++|.+++-+| |. ..-+-|..+-+.|-+
T Consensus        87 ~La~~~~~~~g~iVvHtS-Ga-~~~~vL~p~~~~Ga~  121 (127)
T PF10727_consen   87 QLAQYGAWRPGQIVVHTS-GA-LGSDVLAPARERGAI  121 (127)
T ss_dssp             HHHCC--S-TT-EEEES--SS---GGGGHHHHHTT-E
T ss_pred             HHHHhccCCCCcEEEECC-CC-ChHHhhhhHHHCCCe
Confidence            33333  68999999985 33 334444444444443

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.44  E-value=4.6e-07  Score=77.63  Aligned_cols=86  Identities=22%  Similarity=0.344  Sum_probs=63.6

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--------------C------CccccCCHHhhhcCCCEEEEeccCC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--------------V------PYAFYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--------------~------~~~~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      +|+|+|.|++|.++|..|...|.+|..|.|..+.              .      ......+++++++++|+|++++|..
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~   80 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ   80 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence            6899999999999999999999999999987532              0      1123468999999999999999954


Q ss_pred             hhhhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073          223 DQTRRMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       223 ~~t~~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                       ..+.++ ++....++++..+|++..|=
T Consensus        81 -~~~~~~-~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   81 -AHREVL-EQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             -GHHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred             -HHHHHH-HHHhhccCCCCEEEEecCCc
Confidence             345444 45556678999999998764

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.43  E-value=3.2e-06  Score=84.98  Aligned_cols=176  Identities=19%  Similarity=0.182  Sum_probs=106.5

Q ss_pred             CeeEEEEeCCCCCCHHHHhcCC-CceEEEEccCCCCCCChhHHhhCCcEEEeCCCCC--h--------HHHHHHHHHHHH
Q 020073           61 SIEAILCSGDSPVTLDILRLLP-KLRLVVTASAGVNHIHMPECRRRGIAVANAGSIF--S--------DDAADAAVGLLI  129 (331)
Q Consensus        61 ~~d~ii~~~~~~i~~~~l~~~p-~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~--~--------~~vAE~al~l~L  129 (331)
                      ++|+|+.-.  +.+.+-++.++ +--+|+...-..|.=-++.+.+++|.+..--...  +        .++|+.+     
T Consensus        64 ~adiIlkV~--~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iA-----  136 (511)
T TIGR00561        64 QSDIILKVN--APSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIA-----  136 (511)
T ss_pred             cCCEEEEeC--CCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHH-----
Confidence            467776422  23444466654 5556666555555445677888998887622111  1        1333322     


Q ss_pred             HHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccc--
Q 020073          130 DVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAF--  201 (331)
Q Consensus       130 ~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~--  201 (331)
                       -.|-+....+..  |++..-..-..| .+.+.++.|+|+|.+|...++.++.+|++|.+++++...      .+...  
T Consensus       137 -Gy~Avi~Aa~~l--gr~~~g~~taag-~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~  212 (511)
T TIGR00561       137 -GYRAIIEAAHEF--GRFFTGQITAAG-KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLE  212 (511)
T ss_pred             -HHHHHHHHHHHh--hhhcCCceecCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEe
Confidence             222222221111  111110001122 456789999999999999999999999999999877543      11110  


Q ss_pred             c---------------C----------CHHhhhcCCCEEEEec--cCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 020073          202 Y---------------S----------NVCELAANSDALIICC--ALTDQTRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       202 ~---------------~----------~l~ell~~aDiV~l~~--P~t~~t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      .               .          -+.+.++++|+|+.++  |..+ ...++.++.++.||+|+++||+|-
T Consensus       213 v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~  285 (511)
T TIGR00561       213 LDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA  285 (511)
T ss_pred             ccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence            0               0          0456678999999887  3322 235899999999999999999974

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=98.43  E-value=4.8e-07  Score=83.93  Aligned_cols=90  Identities=19%  Similarity=0.297  Sum_probs=75.1

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHH
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINRE  232 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~  232 (331)
                      .+.||.+.|.|+|.+|+.-|+.|++||.+|++....+-.     .......+++|+.++.||++.+.    ..+.+|..+
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtT----Gc~dii~~~  286 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTT----GCKDIITGE  286 (434)
T ss_pred             eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEcc----CCcchhhHH
Confidence            378999999999999999999999999999998765533     12223568999999999998764    356789999


Q ss_pred             HHhcCCCCcEEEEcCCCCc
Q 020073          233 VMLALGKEGIIVNVGRGAV  251 (331)
Q Consensus       233 ~l~~mk~ga~lIn~srg~~  251 (331)
                      +|.+||.++++.|++.-.+
T Consensus       287 H~~~mk~d~IvCN~Ghfd~  305 (434)
T KOG1370|consen  287 HFDQMKNDAIVCNIGHFDT  305 (434)
T ss_pred             HHHhCcCCcEEeccccccc
Confidence            9999999999999986553

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.42  E-value=5.9e-07  Score=85.28  Aligned_cols=89  Identities=18%  Similarity=0.277  Sum_probs=69.4

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C--------------CccccCCHHhhhcCCCEEEEeccC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V--------------PYAFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~--------------~~~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      ++|+|||+|.||..+|..|...|.+|.+|+|++..      .              +.....+++++++.+|+|++|+|.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS   81 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence            47999999999999999999999999999987532      1              122245778889999999999996


Q ss_pred             ChhhhhhccHHHHhcCCCCcEEEEcCCCCcc
Q 020073          222 TDQTRRMINREVMLALGKEGIIVNVGRGAVI  252 (331)
Q Consensus       222 t~~t~~li~~~~l~~mk~ga~lIn~srg~~v  252 (331)
                       ..+..++ .+....+++++++|+++.|--.
T Consensus        82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         82 -QALREVL-KQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             -HHHHHHH-HHHHhhcCCCCEEEEEeecccC
Confidence             4666666 3455567889999999766443

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.41  E-value=1e-06  Score=82.24  Aligned_cols=129  Identities=19%  Similarity=0.221  Sum_probs=91.0

Q ss_pred             CccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.||+++|||. |.+|+.+|..|...|+.|+++...        ..++.+..++||+|+++++..    +++.... 
T Consensus       153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------t~~l~~~~~~ADIVI~avg~~----~~v~~~~-  219 (284)
T PRK14179        153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------TRNLAEVARKADILVVAIGRG----HFVTKEF-  219 (284)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------CCCHHHHHhhCCEEEEecCcc----ccCCHHH-
Confidence            44799999999999 999999999999999999998321        237899999999999999854    3566654 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN  314 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n  314 (331)
                        +|+|+++||+|--.+.          +|++   .-||-..+-      .+ ---.+||=-||.-.-+..-+.+.+++-
T Consensus       220 --ik~GavVIDvgin~~~----------~gkl---~GDVdf~~v------~~-~a~~iTPVPGGVGp~T~a~L~~N~~~a  277 (284)
T PRK14179        220 --VKEGAVVIDVGMNRDE----------NGKL---IGDVDFDEV------AE-VASYITPVPGGVGPMTITMLMEQTYQA  277 (284)
T ss_pred             --ccCCcEEEEecceecC----------CCCe---ecCccHHHH------Hh-hccEecCCCCCchHHHHHHHHHHHHHH
Confidence              7999999999854422          3554   345532211      11 123589987777665555555555554


Q ss_pred             HHHHH
Q 020073          315 LEALF  319 (331)
Q Consensus       315 l~~~~  319 (331)
                      .++++
T Consensus       278 ~~~~~  282 (284)
T PRK14179        278 ALRSL  282 (284)
T ss_pred             HHHHh
Confidence            44443

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.38  E-value=3.6e-06  Score=82.49  Aligned_cols=121  Identities=17%  Similarity=0.182  Sum_probs=83.7

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----C----------------C-ccc--cCCHHhhhcCCCEEEEe
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----V----------------P-YAF--YSNVCELAANSDALIIC  218 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~----------------~-~~~--~~~l~ell~~aDiV~l~  218 (331)
                      +|+|||+|.||..+|..+.. |++|+++|++...     .                . ...  ..+..++.++||+|++|
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~   80 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIA   80 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEe
Confidence            69999999999999977764 9999999987654     1                0 011  12356778999999999


Q ss_pred             ccCCh----------hhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCC----cc
Q 020073          219 CALTD----------QTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPK----EL  284 (331)
Q Consensus       219 ~P~t~----------~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~----~L  284 (331)
                      +|..-          ..+..+ ++.. .+++|.++|+.|.-.+=..+.+.+.+.+..+      +|.+|...+.    ++
T Consensus        81 Vpt~~~~k~~~~dl~~v~~v~-~~i~-~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a~~d~  152 (388)
T PRK15057         81 TPTDYDPKTNYFNTSSVESVI-KDVV-EINPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKALYDN  152 (388)
T ss_pred             CCCCCccCCCCcChHHHHHHH-HHHH-hcCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCcccccc
Confidence            99651          112222 2333 3799999999999888788888887765433      2366654332    45


Q ss_pred             ccCCceEE
Q 020073          285 LELDNVVL  292 (331)
Q Consensus       285 ~~~~nvil  292 (331)
                      ...|.|++
T Consensus       153 ~~p~rvv~  160 (388)
T PRK15057        153 LHPSRIVI  160 (388)
T ss_pred             cCCCEEEE
Confidence            66667654

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.38  E-value=1.4e-06  Score=81.44  Aligned_cols=122  Identities=16%  Similarity=0.235  Sum_probs=86.9

Q ss_pred             ccCCCceEEEEecCh-HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073          157 SKLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML  235 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~  235 (331)
                      .++.|+++.|||.|. +|+.+|..|...|++|+++.+..        .++.+.+++||+|+++++.    .++|.++.  
T Consensus       154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------~~l~~~~~~ADIVIsAvg~----p~~i~~~~--  219 (286)
T PRK14175        154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------KDMASYLKDADVIVSAVGK----PGLVTKDV--  219 (286)
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------hhHHHHHhhCCEEEECCCC----CcccCHHH--
Confidence            469999999999998 99999999999999998876532        4689999999999999874    34787765  


Q ss_pred             cCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHH
Q 020073          236 ALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVG  313 (331)
Q Consensus       236 ~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~  313 (331)
                       +|+|+++||+|--..          .+|++   .-||-..+      ..+. --.+||=-||.-.-+...+.+.+++
T Consensus       220 -vk~gavVIDvGi~~~----------~~gkl---~GDvd~~~------~~~~-a~~iTPVPGGVGp~T~a~L~~n~~~  276 (286)
T PRK14175        220 -VKEGAVIIDVGNTPD----------ENGKL---KGDVDYDA------VKEI-AGAITPVPGGVGPLTITMVLNNTLL  276 (286)
T ss_pred             -cCCCcEEEEcCCCcC----------CCCCe---ecCccHHH------HHhh-ccCcCCCCCCCHHHHHHHHHHHHHH
Confidence             699999999996441          13444   34552111      1111 1358898777666554444444443

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.37  E-value=2e-06  Score=86.92  Aligned_cols=112  Identities=18%  Similarity=0.245  Sum_probs=82.2

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC-----------------C-------------ccccCCHHhhhcC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV-----------------P-------------YAFYSNVCELAAN  211 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----------------~-------------~~~~~~l~ell~~  211 (331)
                      ++|||||+|.||..+|..+...|++|++||++++..                 +             .....++++ +++
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~   84 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD   84 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence            579999999999999999999999999999886430                 1             012346654 579


Q ss_pred             CCEEEEeccCChhhhhhccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHhCCceEEEeecCCCCC
Q 020073          212 SDALIICCALTDQTRRMINREVMLALGKEGIIV-NVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEP  278 (331)
Q Consensus       212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lI-n~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP  278 (331)
                      ||+|+.|+|.+.+.+.-+-.+.-..++++++|. |+|.-.+   ..+.+++.. ..+..++..|.+-|
T Consensus        85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Pap  148 (503)
T TIGR02279        85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAP  148 (503)
T ss_pred             CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCccc
Confidence            999999999988888776555555678888776 6665443   466676643 33456777777555

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.36  E-value=2.4e-07  Score=83.32  Aligned_cols=126  Identities=13%  Similarity=0.156  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHH--hhCCCEEEE-ECCCC
Q 020073          118 DDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRL--QAFGCNVLY-NSRSK  194 (331)
Q Consensus       118 ~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l--~~~G~~V~~-~~~~~  194 (331)
                      .+.++|.+..++...|++.         .|.           ..++++|||+|.+|+.+++.+  ...|+++++ +|+.+
T Consensus        61 ~~~~gy~v~~l~~~~~~~l---------~~~-----------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~  120 (213)
T PRK05472         61 KRGVGYNVEELLEFIEKIL---------GLD-----------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDP  120 (213)
T ss_pred             CCCCCeeHHHHHHHHHHHh---------CCC-----------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECCh
Confidence            3445688888888777754         111           235799999999999999863  357888774 56544


Q ss_pred             CCC-----C--ccccCCHHhhhcC--CCEEEEeccCChh---hhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 020073          195 KPV-----P--YAFYSNVCELAAN--SDALIICCALTDQ---TRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLV  262 (331)
Q Consensus       195 ~~~-----~--~~~~~~l~ell~~--aDiV~l~~P~t~~---t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~  262 (331)
                      ...     +  .....++.+++++  .|+|++|+|.+..   ...+.......-+...++.+|+.+|.+|+..+|..+|.
T Consensus       121 ~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~  200 (213)
T PRK05472        121 EKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQ  200 (213)
T ss_pred             hhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHH
Confidence            331     1  1223467787755  9999999998764   22233333334456678899999999999999999986


Q ss_pred             h
Q 020073          263 R  263 (331)
Q Consensus       263 ~  263 (331)
                      .
T Consensus       201 ~  201 (213)
T PRK05472        201 T  201 (213)
T ss_pred             H
Confidence            4

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.34  E-value=1.9e-06  Score=87.28  Aligned_cols=112  Identities=16%  Similarity=0.237  Sum_probs=82.9

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--C---------------C-------------ccccCCHHhhhcC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--V---------------P-------------YAFYSNVCELAAN  211 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--~---------------~-------------~~~~~~l~ell~~  211 (331)
                      ++|||||+|.||..+|..+...|++|+++|++++.  .               +             .....++++ +++
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~   86 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD   86 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence            67999999999999999999999999999988653  0               1             122346655 569


Q ss_pred             CCEEEEeccCChhhhhhccHHHHhcCCCCcEE-EEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCC
Q 020073          212 SDALIICCALTDQTRRMINREVMLALGKEGII-VNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEP  278 (331)
Q Consensus       212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~l-In~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP  278 (331)
                      ||+|+.++|.+.+.+..+-.+.-..+++++++ +|+|.-.+   .++.+++... =+..++..|.+-|
T Consensus        87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p-~r~~G~hff~Pa~  150 (507)
T PRK08268         87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHP-ERVAGLHFFNPVP  150 (507)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCc-ccEEEEeecCCcc
Confidence            99999999999998887755544556899998 58887665   3566665432 2235677776544

>PRK07680 late competence protein ComER; Validated

Probab=98.34  E-value=2.1e-06  Score=80.01  Aligned_cols=96  Identities=17%  Similarity=0.314  Sum_probs=72.4

Q ss_pred             eEEEEecChHHHHHHHHHhhCCC----EEEEECCCCCC-------C-CccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGC----NVLYNSRSKKP-------V-PYAFYSNVCELAANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~----~V~~~~~~~~~-------~-~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~  230 (331)
                      +|+|||+|.||+.+++.|...|.    +|.+++|+.+.       . +.....+..+++.++|+|++++| ......++ 
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl-   79 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL-   79 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH-
Confidence            69999999999999999988773    78999997643       1 23334578888999999999997 33455555 


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 020073          231 REVMLALGKEGIIVNVGRGAVIDENEMVRCLV  262 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~  262 (331)
                      ++....++++.++|+++-|  +..+.|.+.+.
T Consensus        80 ~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~  109 (273)
T PRK07680         80 QKLAPHLTDEHCLVSITSP--ISVEQLETLVP  109 (273)
T ss_pred             HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            3344567788999999854  36777776654

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.33  E-value=1.7e-06  Score=79.96  Aligned_cols=96  Identities=11%  Similarity=0.247  Sum_probs=72.2

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCE---EEEECCCCCC-------C-CccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCN---VLYNSRSKKP-------V-PYAFYSNVCELAANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~---V~~~~~~~~~-------~-~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      +|||||+|+||+.+++.+...|..   |.+++|+.+.       . +.....+..++++++|+|++|+| ......++..
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~   80 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA   80 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence            699999999999999999877753   5788887653       1 23345678889999999999999 4455555532


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073          232 EVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG  264 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~  264 (331)
                        + .++++.++|.++  .-+..+.|.+.+..+
T Consensus        81 --l-~~~~~~~vis~~--ag~~~~~l~~~~~~~  108 (258)
T PRK06476         81 --L-RFRPGQTVISVI--AATDRAALLEWIGHD  108 (258)
T ss_pred             --h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence              3 257889999987  337888888887653

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.32  E-value=3.5e-06  Score=78.81  Aligned_cols=98  Identities=16%  Similarity=0.325  Sum_probs=71.9

Q ss_pred             ceEEEEecChHHHHHHHHHhhCC----CEEEEECCCCCC--------C-CccccCCHHhhhcCCCEEEEeccCChhhhhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFG----CNVLYNSRSKKP--------V-PYAFYSNVCELAANSDALIICCALTDQTRRM  228 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G----~~V~~~~~~~~~--------~-~~~~~~~l~ell~~aDiV~l~~P~t~~t~~l  228 (331)
                      .+|+|||+|.||+++++.+...|    .+|.+++++...        . ......+..+++.++|+|++|+|. .....+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v   80 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL   80 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence            47999999999999999998877    688888875422        1 112245778889999999999983 344444


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073          229 INREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR  263 (331)
Q Consensus       229 i~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~  263 (331)
                      + .+....++++..+|.+.-|  +..+.|.+.+..
T Consensus        81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~  112 (277)
T PRK06928         81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPG  112 (277)
T ss_pred             H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence            4 3333456778899998877  666788887743

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.30  E-value=2.3e-06  Score=85.45  Aligned_cols=106  Identities=18%  Similarity=0.218  Sum_probs=90.1

Q ss_pred             HHHHHHHHHhhCCCEEEEECCCCCC-----C------CccccCCHHhhhcC---CCEEEEeccCChhhhhhccHHHHhcC
Q 020073          172 IGLQVAKRLQAFGCNVLYNSRSKKP-----V------PYAFYSNVCELAAN---SDALIICCALTDQTRRMINREVMLAL  237 (331)
Q Consensus       172 IG~~~A~~l~~~G~~V~~~~~~~~~-----~------~~~~~~~l~ell~~---aDiV~l~~P~t~~t~~li~~~~l~~m  237 (331)
                      ||+.+|++|...|++|.+|||++.+     .      +.....++.++++.   +|+|++|+|..+.++.++ ...++.+
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l   79 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL   79 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence            7999999999999999999999765     1      13446789988774   899999999999999998 5688899


Q ss_pred             CCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCC
Q 020073          238 GKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEP  278 (331)
Q Consensus       238 k~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP  278 (331)
                      .+|.++||++....-|...+.+.+++..+.....=|...++
T Consensus        80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~  120 (459)
T PRK09287         80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE  120 (459)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence            99999999999999999999999999988765555666544

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.30  E-value=2.9e-06  Score=75.47  Aligned_cols=85  Identities=25%  Similarity=0.311  Sum_probs=63.9

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC---------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP---------VPYAFYSNVCELAANSDALIICCALTDQTRRMINRE  232 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~  232 (331)
                      ++++|+|.|+||..+|+++...|.+|.+-++...+         .....-.+.+++.+.+|+|++++|...- ... .++
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~-~~v-~~~   79 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAI-PDV-LAE   79 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHH-HhH-HHH
Confidence            68999999999999999999999999887655433         1112235788999999999999997633 332 355


Q ss_pred             HHhcCCCCcEEEEcCCC
Q 020073          233 VMLALGKEGIIVNVGRG  249 (331)
Q Consensus       233 ~l~~mk~ga~lIn~srg  249 (331)
                      ....+. |.++|++.-.
T Consensus        80 l~~~~~-~KIvID~tnp   95 (211)
T COG2085          80 LRDALG-GKIVIDATNP   95 (211)
T ss_pred             HHHHhC-CeEEEecCCC
Confidence            555555 8899988653

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.27  E-value=1.1e-05  Score=67.97  Aligned_cols=80  Identities=20%  Similarity=0.293  Sum_probs=67.5

Q ss_pred             CccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.||++.|+| -+.+|+.+|..|...|++|..+++..        .++++.+++||+|+.+++..    ++|+.+. 
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------~~l~~~v~~ADIVvsAtg~~----~~i~~~~-   89 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------IQLQSKVHDADVVVVGSPKP----EKVPTEW-   89 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------cCHHHHHhhCCEEEEecCCC----CccCHHH-
Confidence            4579999999999 56789999999999999999887532        37899999999999998644    5788877 


Q ss_pred             hcCCCCcEEEEcCCCC
Q 020073          235 LALGKEGIIVNVGRGA  250 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~  250 (331)
                        +|+|+++||++...
T Consensus        90 --ikpGa~Vidvg~~~  103 (140)
T cd05212          90 --IKPGATVINCSPTK  103 (140)
T ss_pred             --cCCCCEEEEcCCCc
Confidence              69999999998655

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.26  E-value=8.6e-07  Score=76.78  Aligned_cols=90  Identities=20%  Similarity=0.331  Sum_probs=67.0

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------------CC-------------------ccccCCH
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------------VP-------------------YAFYSNV  205 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~~-------------------~~~~~~l  205 (331)
                      .+...++.|+|.|..|+..++.++++|++|..++.....             ..                   ..+...+
T Consensus        17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f   96 (168)
T PF01262_consen   17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF   96 (168)
T ss_dssp             EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence            467789999999999999999999999999998876432             00                   1111357


Q ss_pred             HhhhcCCCEEEEec-cCChhhhhhccHHHHhcCCCCcEEEEcC
Q 020073          206 CELAANSDALIICC-ALTDQTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       206 ~ell~~aDiV~l~~-P~t~~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      .+.++.+|+|+.++ -..+..-.++.++.++.||+|++++++|
T Consensus        97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            78899999998654 3466777899999999999999999997

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.26  E-value=1.6e-05  Score=75.11  Aligned_cols=87  Identities=14%  Similarity=0.188  Sum_probs=72.5

Q ss_pred             HHHHHHHHhhCCCEEEEECCCCCC-----------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCc
Q 020073          173 GLQVAKRLQAFGCNVLYNSRSKKP-----------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG  241 (331)
Q Consensus       173 G~~~A~~l~~~G~~V~~~~~~~~~-----------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga  241 (331)
                      |+.+|++|...|++|++||+++..           .+.....+..++++++|+|++|+|..+.++.++ ...++.+++|+
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga  110 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA  110 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence            889999999999999999887542           244456689999999999999999988888887 56888999999


Q ss_pred             EEEEcCCCCccCHHHHHHHHHh
Q 020073          242 IIVNVGRGAVIDENEMVRCLVR  263 (331)
Q Consensus       242 ~lIn~srg~~vd~~al~~aL~~  263 (331)
                      ++||+|.   ++.+.++..|+.
T Consensus       111 IVID~ST---IsP~t~~~~~e~  129 (341)
T TIGR01724       111 VICNTCT---VSPVVLYYSLEK  129 (341)
T ss_pred             EEEECCC---CCHHHHHHHHHH
Confidence            9999964   666777777766

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.24  E-value=8.5e-06  Score=62.59  Aligned_cols=67  Identities=24%  Similarity=0.401  Sum_probs=55.7

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhC-CCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAF-GCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML  235 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~-G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~  235 (331)
                      ..+.+++++|+|.|.+|+.+++.+... +.+|.+++|                    |+++.+.+..    +.+.++...
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------di~i~~~~~~----~~~~~~~~~   74 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------DILVTATPAG----VPVLEEATA   74 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------CEEEEcCCCC----CCchHHHHH
Confidence            357889999999999999999999988 568888876                    9999987643    455555688


Q ss_pred             cCCCCcEEEEcC
Q 020073          236 ALGKEGIIVNVG  247 (331)
Q Consensus       236 ~mk~ga~lIn~s  247 (331)
                      .+++++++++++
T Consensus        75 ~~~~~~~v~~~a   86 (86)
T cd05191          75 KINEGAVVIDLA   86 (86)
T ss_pred             hcCCCCEEEecC
Confidence            899999999874

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=98.22  E-value=1.3e-05  Score=75.58  Aligned_cols=135  Identities=18%  Similarity=0.235  Sum_probs=96.4

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhh-cCCCEEEEeccCChhhhhhccHHHH
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELA-ANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell-~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      -.+|||||+|.+|+-.|+.+...|..+..++|+.-.     .+...++.+.+++ +++|+|++|+.. ..+..++..=-+
T Consensus        52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilatypf  130 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATYPF  130 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhcCc
Confidence            468999999999999999999999999999997633     3455567788776 559999999753 245555544456


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCC
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRA  297 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a  297 (331)
                      +++|.|++++++-.-+...-+++.+.|-+.--.=+.=-.|.++- ..+.+..+|=|+.-=.+|
T Consensus       131 qrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPks-vnh~wqglpfVydkvRig  192 (480)
T KOG2380|consen  131 QRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKS-VNHEWQGLPFVYDKVRIG  192 (480)
T ss_pred             hhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCc-CCCccccCceEEEEeecc
Confidence            77899999999999998888888888866321111122233331 234566778776665454

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=98.22  E-value=6e-06  Score=70.97  Aligned_cols=122  Identities=21%  Similarity=0.253  Sum_probs=75.1

Q ss_pred             CccCCCceEEEEecCh-HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.||++.|||-+. +|+.++..|...|+.|..+...        ..++++.+++||+|+.++.-    .++|..+. 
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~--------T~~l~~~~~~ADIVVsa~G~----~~~i~~~~-   97 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK--------TKNLQEITRRADIVVSAVGK----PNLIKADW-   97 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT--------SSSHHHHHTTSSEEEE-SSS----TT-B-GGG-
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCC--------CCcccceeeeccEEeeeecc----cccccccc-
Confidence            3469999999999885 9999999999999999887653        25799999999999999863    45776654 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELA  311 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~  311 (331)
                        +|+|+++||++.-..         -.++++   .-||..      +...+ .--.+||=-||.-.-+..-+.+.+
T Consensus        98 --ik~gavVIDvG~~~~---------~~~~~~---~GDv~~------~~~~~-~a~~itPvPgGVGplT~a~L~~N~  153 (160)
T PF02882_consen   98 --IKPGAVVIDVGINYV---------PGDGKL---VGDVDF------ESVKE-KASAITPVPGGVGPLTVAMLMKNL  153 (160)
T ss_dssp             --S-TTEEEEE--CEEE---------TTTTEE---EESB-H------HHHHT-TCSEEE-SSSSCHHHHHHHHHHHH
T ss_pred             --ccCCcEEEecCCccc---------ccccee---eecccH------HHhhc-cceEEeeCCCCccHHHHHHHHHHH
Confidence              699999999986654         122333   345521      11222 233578877776654444433333

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.21  E-value=2e-06  Score=85.04  Aligned_cols=90  Identities=21%  Similarity=0.310  Sum_probs=69.2

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCC-CEEEEECCCCCC-------CCc--cccCCHHhhhcCCCEEEEeccCChhhhh
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFG-CNVLYNSRSKKP-------VPY--AFYSNVCELAANSDALIICCALTDQTRR  227 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~-------~~~--~~~~~l~ell~~aDiV~l~~P~t~~t~~  227 (331)
                      .+.|++++|+|+|.||+.+++.|+..| .+|++++|+...       .+.  ....++.+++.++|+|+.|++   .+..
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~---s~~~  253 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTG---APHP  253 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCC---CCCc
Confidence            478999999999999999999999999 689999998654       111  122467788899999999965   4456


Q ss_pred             hccHHHHhcCC----CCcEEEEcCCCC
Q 020073          228 MINREVMLALG----KEGIIVNVGRGA  250 (331)
Q Consensus       228 li~~~~l~~mk----~ga~lIn~srg~  250 (331)
                      +++++.++.+.    .+.++||.+...
T Consensus       254 ii~~e~l~~~~~~~~~~~~viDla~Pr  280 (417)
T TIGR01035       254 IVSKEDVERALRERTRPLFIIDIAVPR  280 (417)
T ss_pred             eEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            78888887652    235888887543

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.18  E-value=1.2e-05  Score=75.28  Aligned_cols=127  Identities=22%  Similarity=0.252  Sum_probs=87.6

Q ss_pred             CccCCCceEEEEecCh-HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.||++.|||.|. +|+.+|..|...|+.|+++.+.        ..+|.+.+++||+|+.+++-.    +++..+. 
T Consensus       154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~--------T~~l~~~~~~ADIvi~avG~p----~~v~~~~-  220 (285)
T PRK10792        154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF--------TKNLRHHVRNADLLVVAVGKP----GFIPGEW-  220 (285)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC--------CCCHHHHHhhCCEEEEcCCCc----ccccHHH-
Confidence            3478999999999999 9999999999999999887643        247999999999999998522    3676654 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN  314 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n  314 (331)
                        +|+|+++||+|--.+-          +|++.   -||-..      ...+. --.+||=-||...-+...+.+.+++-
T Consensus       221 --vk~gavVIDvGin~~~----------~gk~~---GDvd~~------~~~~~-a~~itPvPGGVGp~T~a~L~~N~~~a  278 (285)
T PRK10792        221 --IKPGAIVIDVGINRLE----------DGKLV---GDVEFE------TAAER-ASWITPVPGGVGPMTVATLLENTLQA  278 (285)
T ss_pred             --cCCCcEEEEccccccc----------CCCcC---CCcCHH------HHHhh-ccCcCCCCCCChHHHHHHHHHHHHHH
Confidence              6999999999943321          23332   343110      01111 23588887887766555555555544


Q ss_pred             HHH
Q 020073          315 LEA  317 (331)
Q Consensus       315 l~~  317 (331)
                      .++
T Consensus       279 ~~~  281 (285)
T PRK10792        279 CEE  281 (285)
T ss_pred             HHH
Confidence            333

>PLN00203 glutamyl-tRNA reductase

Probab=98.16  E-value=2.9e-06  Score=85.81  Aligned_cols=89  Identities=20%  Similarity=0.320  Sum_probs=68.9

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-------C-Cc----cccCCHHhhhcCCCEEEEeccCChh
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-------V-PY----AFYSNVCELAANSDALIICCALTDQ  224 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------~-~~----~~~~~l~ell~~aDiV~l~~P~t~~  224 (331)
                      ++.+++|+|||.|.||+.+++.|...|+ +|++++|+...       . +.    ....++.+++.++|+|+.|+|   .
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s  339 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---S  339 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---C
Confidence            4889999999999999999999999997 79999998654       1 11    123467788999999999865   4


Q ss_pred             hhhhccHHHHhcCCCC-------cEEEEcCCC
Q 020073          225 TRRMINREVMLALGKE-------GIIVNVGRG  249 (331)
Q Consensus       225 t~~li~~~~l~~mk~g-------a~lIn~srg  249 (331)
                      ...+|.++.++.++++       .++||.+=.
T Consensus       340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvP  371 (519)
T PLN00203        340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVP  371 (519)
T ss_pred             CCCeeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence            5668889998887432       377777644

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.16  E-value=3.5e-05  Score=71.34  Aligned_cols=95  Identities=18%  Similarity=0.295  Sum_probs=67.9

Q ss_pred             ceEEEEecChHHHHHHHHHhhCC---CEEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFG---CNVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G---~~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      ++|+|||+|.||+.+++.+...|   .+|.+++|+.+.       .+.....+..+++.++|+|++|+|.. ....++..
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~~~   81 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVLSE   81 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHHHH
Confidence            57999999999999999998888   689999998643       12333457788889999999999843 34444422


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 020073          232 EVMLALGKEGIIVNVGRGAVIDENEMVRCLV  262 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~srg~~vd~~al~~aL~  262 (331)
                       ....+  +.++|++.-|-  ..+.+.+.+.
T Consensus        82 -l~~~~--~~~vvs~~~gi--~~~~l~~~~~  107 (267)
T PRK11880         82 -LKGQL--DKLVVSIAAGV--TLARLERLLG  107 (267)
T ss_pred             -HHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence             22223  46778876653  5666776665

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.15  E-value=5.3e-06  Score=77.18  Aligned_cols=90  Identities=26%  Similarity=0.346  Sum_probs=70.0

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~  230 (331)
                      -|.||+|+|||+|+-|++-|..|+..|.+|++--|....       .++ ...+.+|+.++||+|.+.+|...+ ..+..
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf-~V~~v~ea~k~ADvim~L~PDe~q-~~vy~   92 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGF-KVYTVEEAAKRADVVMILLPDEQQ-KEVYE   92 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCC-EeecHHHHhhcCCEEEEeCchhhH-HHHHH
Confidence            489999999999999999999999999998776554433       233 345899999999999999996544 34566


Q ss_pred             HHHHhcCCCCcEEEEcCCCC
Q 020073          231 REVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~srg~  250 (331)
                      ++.-..||.|+.| --|.|=
T Consensus        93 ~~I~p~Lk~G~aL-~FaHGf  111 (338)
T COG0059          93 KEIAPNLKEGAAL-GFAHGF  111 (338)
T ss_pred             HHhhhhhcCCceE-Eecccc
Confidence            6777889999854 444543

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.14  E-value=5.3e-05  Score=72.93  Aligned_cols=158  Identities=15%  Similarity=0.181  Sum_probs=122.6

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--------C---CccccCCHHh---hhcCCCEEEEeccCChhhhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--------V---PYAFYSNVCE---LAANSDALIICCALTDQTRR  227 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--------~---~~~~~~~l~e---ll~~aDiV~l~~P~t~~t~~  227 (331)
                      ..+|+||+|.||+.+|......|++|.+|+|+..+        .   ....+.+++|   .++...-|++++-.......
T Consensus         4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~   83 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA   83 (473)
T ss_pred             cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence            46999999999999999999999999999999765        1   1223345555   46788889998865433355


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHH
Q 020073          228 MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDL  307 (331)
Q Consensus       228 li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~  307 (331)
                      .| .+.+..|.+|-++|+-+-..--|...-.++|....|...+.-|...|--...    -|-+     +-|.+.++++..
T Consensus        84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~----GPSi-----MpGG~~eay~~v  153 (473)
T COG0362          84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARH----GPSI-----MPGGQKEAYELV  153 (473)
T ss_pred             HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccccccc----CCCc-----CCCCCHHHHHHH
Confidence            56 6678889999999999999999999999999999999999999988863211    1211     347788888887


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCC
Q 020073          308 CELAVGNLEALFSNQPLLSPVTA  330 (331)
Q Consensus       308 ~~~~~~nl~~~~~g~~~~~~v~~  330 (331)
                      .-++ +.|.+-..|+|+..-|.|
T Consensus       154 ~pil-~~IaAk~~g~pCc~~iG~  175 (473)
T COG0362         154 APIL-TKIAAKVDGEPCCTWIGP  175 (473)
T ss_pred             HHHH-HHHHhhcCCCCceeeECC
Confidence            7764 456666679998777665

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.14  E-value=2.4e-06  Score=79.68  Aligned_cols=90  Identities=20%  Similarity=0.252  Sum_probs=73.0

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC---C----Ccc------ccCCHHhhhcCCCEEEEeccC-Ch
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP---V----PYA------FYSNVCELAANSDALIICCAL-TD  223 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---~----~~~------~~~~l~ell~~aDiV~l~~P~-t~  223 (331)
                      .+...+|.|||.|-+|...|+.+.++|.+|...+.+.++   .    +.+      ....+++.+.++|+|+-++=- ..
T Consensus       165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga  244 (371)
T COG0686         165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA  244 (371)
T ss_pred             CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence            366678999999999999999999999999999988654   1    111      123588999999999988722 33


Q ss_pred             hhhhhccHHHHhcCCCCcEEEEcC
Q 020073          224 QTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       224 ~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      ..-.++.++++++||||+++|+++
T Consensus       245 kaPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         245 KAPKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             CCceehhHHHHHhcCCCcEEEEEE
Confidence            456688999999999999999997

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=98.14  E-value=1.2e-05  Score=74.58  Aligned_cols=123  Identities=23%  Similarity=0.436  Sum_probs=77.6

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCC----EEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhc
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGC----NVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLA  236 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~  236 (331)
                      ..+|+|||+|+||+++++.+...|.    +|++++++....+.....+..+++.++|+|++|+| ...+..++. +....
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~-~i~~~   80 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNTPFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLL-EIKPY   80 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcCCeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHH-HHHhh
Confidence            4689999999999999999987652    58888887654333344577788899999999987 445666653 23334


Q ss_pred             CCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCC
Q 020073          237 LGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPH  295 (331)
Q Consensus       237 mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH  295 (331)
                      ++++ .+|.+.-|  +..+.+.+.+...+.   ...+   -|..+ .+...-.++++|.
T Consensus        81 l~~~-~iIS~~aG--i~~~~l~~~~~~~~~---vvr~---mPn~p-~~~g~g~t~i~~~  129 (260)
T PTZ00431         81 LGSK-LLISICGG--LNLKTLEEMVGVEAK---IVRV---MPNTP-SLVGQGSLVFCAN  129 (260)
T ss_pred             ccCC-EEEEEeCC--ccHHHHHHHcCCCCe---EEEE---CCCch-hHhcceeEEEEeC
Confidence            5554 45655544  345666665543321   1111   22211 3555566777764

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.13  E-value=1.1e-05  Score=75.61  Aligned_cols=123  Identities=18%  Similarity=0.186  Sum_probs=86.0

Q ss_pred             CccCCCceEEEEecCh-HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.|+++.|||.|. +|+++|..|...|++|+++++.        ..++.+.+++||+|+.+++ .   .++++.+. 
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~--------t~~L~~~~~~aDIvI~AtG-~---~~~v~~~~-  220 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR--------TQNLPELVKQADIIVGAVG-K---PELIKKDW-  220 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC--------chhHHHHhccCCEEEEccC-C---CCcCCHHH-
Confidence            3468999999999998 9999999999999999988762        2468888899999999996 2   23677765 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN  314 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n  314 (331)
                        +|+|++++|++-..+           ++++   .=||-.      +...+ .--.+||=-||.-.-+...+.+.+++.
T Consensus       221 --lk~gavViDvg~n~~-----------~~~~---~GDvd~------~~~~~-~a~~itPvPGGVGp~T~a~L~~n~~~~  277 (283)
T PRK14192        221 --IKQGAVVVDAGFHPR-----------DGGG---VGDIEL------QGIEE-IASAYTPVPGGVGPMTINTLIRQTVEA  277 (283)
T ss_pred             --cCCCCEEEEEEEeec-----------CCCC---cccccH------HHhhc-cceEeCCCCCcChHHHHHHHHHHHHHH
Confidence              699999999985442           1222   224421      11111 134579988887665555554444443

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.13  E-value=7.8e-06  Score=76.20  Aligned_cols=80  Identities=19%  Similarity=0.274  Sum_probs=67.9

Q ss_pred             CccCCCceEEEEecC-hHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGLG-NIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.+++|+++.|+|.+ ..|+.+|..+..+|+.|..+.+.        ..++.+.+++||+|+.+++..    +++.++++
T Consensus       147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~--------t~~L~~~~~~ADIvI~Avgk~----~lv~~~~v  214 (279)
T PRK14178        147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSK--------TENLKAELRQADILVSAAGKA----GFITPDMV  214 (279)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecC--------hhHHHHHHhhCCEEEECCCcc----cccCHHHc
Confidence            347999999999999 99999999999999999877643        247999999999999998632    68888884


Q ss_pred             hcCCCCcEEEEcCCCC
Q 020073          235 LALGKEGIIVNVGRGA  250 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~  250 (331)
                         |+|+++||+|-..
T Consensus       215 ---k~GavVIDVgi~~  227 (279)
T PRK14178        215 ---KPGATVIDVGINQ  227 (279)
T ss_pred             ---CCCcEEEEeeccc
Confidence               9999999999544

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.11  E-value=9.3e-06  Score=75.89  Aligned_cols=128  Identities=18%  Similarity=0.204  Sum_probs=89.5

Q ss_pred             CccCCCceEEEEecC-hHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGLG-NIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.||++.|||-| .+|+.+|..|...|+.|+++...        ..+|.+.+++||+|+.+++    ..+++..+++
T Consensus       152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~--------t~~l~~~~~~ADIvV~AvG----~p~~i~~~~v  219 (285)
T PRK14191        152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL--------TKDLSFYTQNADIVCVGVG----KPDLIKASMV  219 (285)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC--------cHHHHHHHHhCCEEEEecC----CCCcCCHHHc
Confidence            347899999999999 99999999999999999887432        2358899999999999985    3457888775


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN  314 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n  314 (331)
                         |+|+++||+|-..+          .+|++.   -||-..+      ..+. --.+||=-||.-.-+..-+.+.+++-
T Consensus       220 ---k~GavVIDvGi~~~----------~~gklv---GDvd~e~------v~~~-a~~iTPVPGGVGpvT~a~L~~N~~~a  276 (285)
T PRK14191        220 ---KKGAVVVDIGINRL----------NDGRLV---GDVDFEN------VAPK-ASFITPVPGGVGPMTIVSLLENTLIA  276 (285)
T ss_pred             ---CCCcEEEEeecccc----------cCCcee---ccccHHH------Hhhh-ccEEecCCCCChHHHHHHHHHHHHHH
Confidence               99999999996543          135543   4552111      1111 12489987776655555555444444


Q ss_pred             HHHH
Q 020073          315 LEAL  318 (331)
Q Consensus       315 l~~~  318 (331)
                      .+++
T Consensus       277 ~~~~  280 (285)
T PRK14191        277 AEKR  280 (285)
T ss_pred             HHHH
Confidence            4443

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=98.10  E-value=2.2e-05  Score=69.20  Aligned_cols=87  Identities=21%  Similarity=0.274  Sum_probs=66.1

Q ss_pred             CCCccCCCceEEEEecC-hHHHHHHHHHhhCCCEEEEECCCCCC-------CCcccc--CC----HHhhhcCCCEEEEec
Q 020073          154 PLGSKLGGKRVGIVGLG-NIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAFY--SN----VCELAANSDALIICC  219 (331)
Q Consensus       154 ~~~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~~--~~----l~ell~~aDiV~l~~  219 (331)
                      +.+.++.||++.|||-+ .+|+.+|..|...|+.|+.++.+.--       ......  .+    +.+.+++||+|++++
T Consensus        55 ~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAv  134 (197)
T cd01079          55 PYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGV  134 (197)
T ss_pred             ccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEcc
Confidence            44778999999999955 57999999999999999988632210       000001  13    789999999999998


Q ss_pred             cCChhhhhh-ccHHHHhcCCCCcEEEEcC
Q 020073          220 ALTDQTRRM-INREVMLALGKEGIIVNVG  247 (331)
Q Consensus       220 P~t~~t~~l-i~~~~l~~mk~ga~lIn~s  247 (331)
                      +..    ++ +..+.   .|+|+++||+|
T Consensus       135 G~~----~~~i~~d~---ik~GavVIDVG  156 (197)
T cd01079         135 PSP----NYKVPTEL---LKDGAICINFA  156 (197)
T ss_pred             CCC----CCccCHHH---cCCCcEEEEcC
Confidence            733    45 77776   59999999998

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.10  E-value=8.3e-06  Score=77.58  Aligned_cols=89  Identities=25%  Similarity=0.368  Sum_probs=62.8

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCC-CEEEEECCCCCC-------CCcc--ccCCHHhhhcCCCEEEEeccCChhhhhh
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFG-CNVLYNSRSKKP-------VPYA--FYSNVCELAANSDALIICCALTDQTRRM  228 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~-------~~~~--~~~~l~ell~~aDiV~l~~P~t~~t~~l  228 (331)
                      +.|++|+|||.|.||+.+++.++..| .+|++++|+..+       .+..  ...++.+.+.++|+|+.++|.... ..+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~  254 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI  254 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence            68999999999999999999999876 478899998653       1211  123567788999999999985533 222


Q ss_pred             ccHHHHhcC-CCCcEEEEcCCC
Q 020073          229 INREVMLAL-GKEGIIVNVGRG  249 (331)
Q Consensus       229 i~~~~l~~m-k~ga~lIn~srg  249 (331)
                      + +..++.. +++.++||.+..
T Consensus       255 ~-~~~~~~~~~~~~~viDlavP  275 (311)
T cd05213         255 V-ERAMKKRSGKPRLIVDLAVP  275 (311)
T ss_pred             H-HHHHhhCCCCCeEEEEeCCC
Confidence            2 3333322 356778877753

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.08  E-value=1.5e-05  Score=74.45  Aligned_cols=121  Identities=17%  Similarity=0.260  Sum_probs=84.7

Q ss_pred             CccCCCceEEEEecCh-HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.|+++.|||.|. +|+.+|..|...|+.|+++...        ..++.+..++||+|++++.-    .++|..+. 
T Consensus       159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~--------T~~l~~~~~~ADIvv~AvG~----p~~i~~~~-  225 (287)
T PRK14176        159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF--------TDDLKKYTLDADILVVATGV----KHLIKADM-  225 (287)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc--------CCCHHHHHhhCCEEEEccCC----ccccCHHH-
Confidence            3478999999999999 9999999999999999887642        24789999999999998742    24777764 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAV  312 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~  312 (331)
                        +|+|+++||+|--..           +|++.   -||-..+      ... .--.+||=-||.-.-+...+.+.++
T Consensus       226 --vk~gavVIDvGin~~-----------~gkl~---GDvd~~~------~~~-~a~~iTPVPGGVGp~T~a~L~~n~~  280 (287)
T PRK14176        226 --VKEGAVIFDVGITKE-----------EDKVY---GDVDFEN------VIK-KASLITPVPGGVGPLTIAMLMKHVL  280 (287)
T ss_pred             --cCCCcEEEEeccccc-----------CCCcc---CCcCHHH------HHh-hceEcCCCCCCChHHHHHHHHHHHH
Confidence              699999999985321           34442   3442111      111 1235888777776654444444433

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.08  E-value=3.4e-05  Score=77.83  Aligned_cols=177  Identities=19%  Similarity=0.223  Sum_probs=104.6

Q ss_pred             CeeEEEEeCCCCCCHHHHhcCC-CceEEEEccCCCCCCChhHHhhCCcEEEeCCCCC----------hHHHHHHHHHHHH
Q 020073           61 SIEAILCSGDSPVTLDILRLLP-KLRLVVTASAGVNHIHMPECRRRGIAVANAGSIF----------SDDAADAAVGLLI  129 (331)
Q Consensus        61 ~~d~ii~~~~~~i~~~~l~~~p-~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~----------~~~vAE~al~l~L  129 (331)
                      ++|+|+.-.  +.+.+-++.++ .--+|+......|.=-++.+.++||.+..-....          =.++|+.+     
T Consensus        65 ~~diilkV~--~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IA-----  137 (509)
T PRK09424         65 QSDIILKVN--APSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIA-----  137 (509)
T ss_pred             cCCEEEEeC--CCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhh-----
Confidence            467777422  23444566665 4456666655555545777888998887521111          01233322     


Q ss_pred             HHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccc--
Q 020073          130 DVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAF--  201 (331)
Q Consensus       130 ~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~--  201 (331)
                       -+|-+....+..  ++.........| ...+.+|.|+|.|.+|...++.++.+|++|+++|+++..      .+...  
T Consensus       138 -Gy~Av~~aa~~~--~~~~~g~~taaG-~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~  213 (509)
T PRK09424        138 -GYRAVIEAAHEF--GRFFTGQITAAG-KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLE  213 (509)
T ss_pred             -HHHHHHHHHHHh--cccCCCceeccC-CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEE
Confidence             122222222111  211110000112 456999999999999999999999999999999987644      22210  


Q ss_pred             c-----------------CC--------HHhhhcCCCEEEEeccCChh-hhhhccHHHHhcCCCCcEEEEcCC
Q 020073          202 Y-----------------SN--------VCELAANSDALIICCALTDQ-TRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       202 ~-----------------~~--------l~ell~~aDiV~l~~P~t~~-t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      .                 .+        +.+.++++|+|+.|...... ...++.++.++.||+|+++|++|-
T Consensus       214 i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        214 LDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             eccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            0                 01        11223579999998854221 234667889999999999999973

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.06  E-value=6.6e-06  Score=81.54  Aligned_cols=88  Identities=22%  Similarity=0.315  Sum_probs=66.0

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-------CC--ccccCCHHhhhcCCCEEEEeccCChhhhh
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-------VP--YAFYSNVCELAANSDALIICCALTDQTRR  227 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------~~--~~~~~~l~ell~~aDiV~l~~P~t~~t~~  227 (331)
                      ++.|++++|||.|.||+.+++.++..|+ +|++++|+...       .+  .....++.+.+.++|+|+.|+|..   ..
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~  255 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP  255 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence            4789999999999999999999999998 79999998654       11  111245667788999999997643   44


Q ss_pred             hccHHHHhcC-----CCCcEEEEcCC
Q 020073          228 MINREVMLAL-----GKEGIIVNVGR  248 (331)
Q Consensus       228 li~~~~l~~m-----k~ga~lIn~sr  248 (331)
                      +++++.++.+     +.+.++||.+-
T Consensus       256 ~i~~~~l~~~~~~~~~~~~vviDla~  281 (423)
T PRK00045        256 IIGKGMVERALKARRHRPLLLVDLAV  281 (423)
T ss_pred             EEcHHHHHHHHhhccCCCeEEEEeCC
Confidence            6777777654     24567888764

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.06  E-value=1.1e-05  Score=75.01  Aligned_cols=100  Identities=16%  Similarity=0.281  Sum_probs=68.6

Q ss_pred             ceEEEEecChHHHHHHHHHhhC--CCEE-EEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF--GCNV-LYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~--G~~V-~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      .++||||+|.||+.+++.+...  ++++ .++|+++..       .+...+.++++++.++|+|+.|+|.... ..++ .
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~-~~~~-~   79 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAV-EEVV-P   79 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHH-HHHH-H
Confidence            4799999999999999998765  5664 467887643       1233457899998999999999874322 1111 2


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCH---HHHHHHHHhCCc
Q 020073          232 EVMLALGKEGIIVNVGRGAVIDE---NEMVRCLVRGEI  266 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~srg~~vd~---~al~~aL~~~~i  266 (331)
                         ..++.|.-++..+-|.+.|.   +.|.++.+++..
T Consensus        80 ---~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~  114 (265)
T PRK13304         80 ---KSLENGKDVIIMSVGALADKELFLKLYKLAKENNC  114 (265)
T ss_pred             ---HHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCC
Confidence               23455666666788887764   456666666553

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.04  E-value=2.7e-05  Score=71.01  Aligned_cols=100  Identities=15%  Similarity=0.271  Sum_probs=67.9

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCC---CE-EEEECCCC-CC-------CCccccCCHHhhhcCCCEEEEeccCChhhhh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFG---CN-VLYNSRSK-KP-------VPYAFYSNVCELAANSDALIICCALTDQTRR  227 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G---~~-V~~~~~~~-~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~  227 (331)
                      .+.+|+|||+|.||+.+++.+...|   .+ |++++++. +.       .+.....+.+++++++|+|++++|.. ..+.
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~   81 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE   81 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH
Confidence            3578999999999999999987665   33 66777642 22       12333467888999999999999854 3344


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073          228 MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG  264 (331)
Q Consensus       228 li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~  264 (331)
                      ++ ++.-..++ +.++|+++-|  ++.+.|.+.+..+
T Consensus        82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~  114 (245)
T PRK07634         82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG  114 (245)
T ss_pred             HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence            43 22222234 5689999766  5555677766544

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.03  E-value=9e-05  Score=67.36  Aligned_cols=148  Identities=16%  Similarity=0.145  Sum_probs=100.8

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCCE---EEEECCCC----CCC------------Cc--ccc-CCHHhhhcCCCE
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCN---VLYNSRSK----KPV------------PY--AFY-SNVCELAANSDA  214 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~---V~~~~~~~----~~~------------~~--~~~-~~l~ell~~aDi  214 (331)
                      .++.++++.|+|.|.+|+.+|..|...|++   |+.+||+.    ...            ..  ... .++.+.++++|+
T Consensus        21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv  100 (226)
T cd05311          21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV  100 (226)
T ss_pred             CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence            457889999999999999999999999984   99999982    210            00  011 267788889999


Q ss_pred             EEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCC-ceEEEeecCCCCCCCCCccccCCceEEc
Q 020073          215 LIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGE-IAGAGLDVFENEPYVPKELLELDNVVLQ  293 (331)
Q Consensus       215 V~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~-i~ga~lDV~~~EP~~~~~L~~~~nvilT  293 (331)
                      |+.+.|     .++++.+.++.|.++.++...+...  .+.-+.+|.+.|. |..-|.     +.    -...-.|+++-
T Consensus       101 lIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP~--~e~~~~~A~~~ga~i~a~G~-----~~----~~~Q~nn~~~f  164 (226)
T cd05311         101 FIGVSR-----PGVVKKEMIKKMAKDPIVFALANPV--PEIWPEEAKEAGADIVATGR-----SD----FPNQVNNVLGF  164 (226)
T ss_pred             EEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCCC--CcCCHHHHHHcCCcEEEeCC-----CC----Cccccceeeec
Confidence            999875     4678889999999999888888432  4544555555444 333332     11    13355689999


Q ss_pred             CCCCCCcH-----HHHHHHHHHHHHHHHHHHc
Q 020073          294 PHRAVFTS-----ECFVDLCELAVGNLEALFS  320 (331)
Q Consensus       294 PH~a~~t~-----~~~~~~~~~~~~nl~~~~~  320 (331)
                      |=++-...     .--+.|...+++-|-.+..
T Consensus       165 Pg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~  196 (226)
T cd05311         165 PGIFRGALDVRATKITEEMKLAAAEAIADLAE  196 (226)
T ss_pred             chhhHHHHHcCCcCCCHHHHHHHHHHHHhhCC
Confidence            97764222     2235666666666666554

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.02  E-value=9.8e-06  Score=71.05  Aligned_cols=108  Identities=19%  Similarity=0.263  Sum_probs=72.0

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------------CC-------------ccccCCHHhhhcCC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------------VP-------------YAFYSNVCELAANS  212 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------------~~-------------~~~~~~l~ell~~a  212 (331)
                      +|+|||.|.||+.+|..+...|++|..+|+++..                 .+             .....+++++. +|
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            6999999999999999999999999999987643                 00             01236788888 99


Q ss_pred             CEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecC
Q 020073          213 DALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVF  274 (331)
Q Consensus       213 DiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~  274 (331)
                      |+|+=++|.+-+.+.-+-++.-+.++++++|...+++  +.-..|...+.. .-+..++=.|
T Consensus        80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~~-p~R~ig~Hf~  138 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALSR-PERFIGMHFF  138 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSST-GGGEEEEEE-
T ss_pred             heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccCc-CceEEEEecc
Confidence            9999999988887776656666677888887655433  455556666542 2233455444

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.00  E-value=3.4e-05  Score=72.17  Aligned_cols=126  Identities=21%  Similarity=0.297  Sum_probs=89.6

Q ss_pred             CccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.||++.||| -..+|+.+|..|...|+.|+.+...        ..++.+.+++||+|+.++.    ..++|+.+++
T Consensus       153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~--------t~~l~~~~~~ADIvI~AvG----~p~~i~~~~i  220 (284)
T PRK14190        153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK--------TKNLAELTKQADILIVAVG----KPKLITADMV  220 (284)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC--------chhHHHHHHhCCEEEEecC----CCCcCCHHHc
Confidence            4479999999999 5678999999999999999887532        2479999999999999985    3358988885


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN  314 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n  314 (331)
                         |+|+++||+|.-.+          .+|++   .-||-..+      ..+ ---.+||--||.-.-+..-+.+.+++-
T Consensus       221 ---k~gavVIDvGi~~~----------~~gkl---~GDvd~e~------v~~-~a~~iTPVPGGVGpvT~a~L~~N~~~a  277 (284)
T PRK14190        221 ---KEGAVVIDVGVNRL----------ENGKL---CGDVDFDN------VKE-KASYITPVPGGVGPMTITMLMHNTVEL  277 (284)
T ss_pred             ---CCCCEEEEeecccc----------CCCCe---eccCcHHH------Hhh-hceEecCCCCCChHHHHHHHHHHHHHH
Confidence               89999999996653          23444   35662111      111 123699988887665555444444443


Q ss_pred             HH
Q 020073          315 LE  316 (331)
Q Consensus       315 l~  316 (331)
                      .+
T Consensus       278 ~~  279 (284)
T PRK14190        278 AK  279 (284)
T ss_pred             HH
Confidence            33

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.98  E-value=3.3e-05  Score=71.61  Aligned_cols=96  Identities=20%  Similarity=0.330  Sum_probs=72.9

Q ss_pred             ceEEEEecChHHHHHHHHHhhCC----CEEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFG----CNVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G----~~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~  230 (331)
                      ++|||||+|+||++++..+...|    .+|++.+|+.+.       .+.....+..++..++|+|++++.  |+    .-
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq----~~   75 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQ----DL   75 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hH----hH
Confidence            57999999999999999999888    589999998765       222225677889999999999984  21    22


Q ss_pred             HHHHhcCC---CCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073          231 REVMLALG---KEGIIVNVGRGAVIDENEMVRCLVRGE  265 (331)
Q Consensus       231 ~~~l~~mk---~ga~lIn~srg~~vd~~al~~aL~~~~  265 (331)
                      .+.++.++   ++.++|.++-|  +..+.|.+.|...+
T Consensus        76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~~~  111 (266)
T COG0345          76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGGLR  111 (266)
T ss_pred             HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcCCCc
Confidence            45556665   68899999877  56677777776333

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.97  E-value=3e-05  Score=72.36  Aligned_cols=120  Identities=16%  Similarity=0.163  Sum_probs=84.3

Q ss_pred             CccCCCceEEEEecC-hHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGLG-NIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.||++.|||-| .+|+.+|..|...|+.|..+...        ..++.+..++||+|++++.    ..+++..++ 
T Consensus       152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~--------T~~l~~~~~~ADIvV~AvG----kp~~i~~~~-  218 (281)
T PRK14183        152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF--------TKDLKAHTKKADIVIVGVG----KPNLITEDM-  218 (281)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------CcCHHHHHhhCCEEEEecC----cccccCHHH-
Confidence            347999999999988 89999999999999999876432        2468899999999999985    345788877 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCEL  310 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~  310 (331)
                        .|+|+++||+|--.+.          .|++   .-||-..+-.      . ---.+||=-||.-.-+..-+.+.
T Consensus       219 --vk~gavvIDvGin~~~----------~gkl---~GDVd~~~~~------~-~a~~iTPVPGGVGpvT~a~L~~N  272 (281)
T PRK14183        219 --VKEGAIVIDIGINRTE----------DGRL---VGDVDFENVA------K-KCSYITPVPGGVGPMTIAMLLSN  272 (281)
T ss_pred             --cCCCcEEEEeeccccC----------CCCe---ECCccHHHHH------h-hceEecCCCCCChHHHHHHHHHH
Confidence              5899999999944321          2444   3566322110      0 11248997777655444433333

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.97  E-value=5.1e-05  Score=70.91  Aligned_cols=129  Identities=17%  Similarity=0.277  Sum_probs=90.0

Q ss_pred             CccCCCceEEEEecC-hHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGLG-NIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+...        ..++.+..++||+|+++++-    .+++..+. 
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~--------T~~l~~~~~~ADIvI~AvG~----~~~i~~~~-  218 (284)
T PRK14170        152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR--------TKDLPQVAKEADILVVATGL----AKFVKKDY-  218 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------CCCHHHHHhhCCEEEEecCC----cCccCHHH-
Confidence            457999999999955 57999999999999999876532        24699999999999999863    35788877 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN  314 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n  314 (331)
                        .|+|+++||+|--.+          .+|++   .-||-...      ..+. --.+||=-||.-.-+..-+.+.+++-
T Consensus       219 --vk~GavVIDvGin~~----------~~gkl---~GDvdfe~------~~~~-a~~iTPVPGGVGpvT~a~L~~N~~~a  276 (284)
T PRK14170        219 --IKPGAIVIDVGMDRD----------ENNKL---CGDVDFDD------VVEE-AGFITPVPGGVGPMTITMLLANTLKA  276 (284)
T ss_pred             --cCCCCEEEEccCccc----------CCCCe---ecccchHH------HHhh-ccEecCCCCChHHHHHHHHHHHHHHH
Confidence              589999999996553          13555   34552111      1111 12689987887665555555555554


Q ss_pred             HHHHH
Q 020073          315 LEALF  319 (331)
Q Consensus       315 l~~~~  319 (331)
                      .++.+
T Consensus       277 ~~~~~  281 (284)
T PRK14170        277 AKRIW  281 (284)
T ss_pred             HHHHh
Confidence            44443

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.96  E-value=0.00014  Score=68.09  Aligned_cols=134  Identities=21%  Similarity=0.193  Sum_probs=92.0

Q ss_pred             CccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.||++.||| -..+|+.+|..|...|+.|+.+...        ..++.+..++||+|++++.    ..++++.++ 
T Consensus       150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~--------T~~l~~~~~~ADIvIsAvG----kp~~i~~~~-  216 (287)
T PRK14173        150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSK--------TQDLPAVTRRADVLVVAVG----RPHLITPEM-  216 (287)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC--------CCCHHHHHhhCCEEEEecC----CcCccCHHH-
Confidence            3478999999999 5668999999999999999876542        2468999999999999985    236888877 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN  314 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n  314 (331)
                        .|+|+++||+|--.+.+        ++|+. ...-||- .+      ..... -.+||=-||.-.-+..-+.+.+++-
T Consensus       217 --vk~GavVIDVGin~~~~--------~~gk~-~l~GDVd-~~------v~~~a-~~iTPVPGGVGp~T~a~L~~N~~~a  277 (287)
T PRK14173        217 --VRPGAVVVDVGINRVGG--------NGGRD-ILTGDVH-PE------VAEVA-GALTPVPGGVGPMTVAMLMANTVIA  277 (287)
T ss_pred             --cCCCCEEEEccCccccC--------CCCce-eeecccc-Hh------HHhhC-cEEecCCCChhHHHHHHHHHHHHHH
Confidence              49999999999665422        13441 1345664 11      11111 2589987886665555555555555


Q ss_pred             HHHHHcC
Q 020073          315 LEALFSN  321 (331)
Q Consensus       315 l~~~~~g  321 (331)
                      .++...|
T Consensus       278 ~~~~~~~  284 (287)
T PRK14173        278 ALRRRGG  284 (287)
T ss_pred             HHHHccC
Confidence            4554444

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=97.95  E-value=2e-05  Score=71.16  Aligned_cols=88  Identities=16%  Similarity=0.241  Sum_probs=62.1

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC--------------Cc---cccCCHHhhhcCCCEEEEeccCCh
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV--------------PY---AFYSNVCELAANSDALIICCALTD  223 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~--------------~~---~~~~~l~ell~~aDiV~l~~P~t~  223 (331)
                      ++|+||| .|.||+.+|+.|...|.+|.+++|+++..              +.   ....+..+.++++|+|++++|.. 
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~-   79 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD-   79 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-
Confidence            3699997 99999999999999999999999876430              00   11235678899999999999954 


Q ss_pred             hhhhhccHHHHhcCCCCcEEEEcCCCCcc
Q 020073          224 QTRRMINREVMLALGKEGIIVNVGRGAVI  252 (331)
Q Consensus       224 ~t~~li~~~~l~~mk~ga~lIn~srg~~v  252 (331)
                      ....++ ++.-..++ +.++|++.-|--.
T Consensus        80 ~~~~~l-~~l~~~l~-~~vvI~~~ngi~~  106 (219)
T TIGR01915        80 HVLKTL-ESLRDELS-GKLVISPVVPLAS  106 (219)
T ss_pred             HHHHHH-HHHHHhcc-CCEEEEeccCcee
Confidence            333333 22222343 5799999776433

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.95  E-value=4.2e-05  Score=73.33  Aligned_cols=102  Identities=19%  Similarity=0.279  Sum_probs=72.7

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCcc-----------------ccCCHHhhhcCCCEEEEec
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYA-----------------FYSNVCELAANSDALIICC  219 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~-----------------~~~~l~ell~~aDiV~l~~  219 (331)
                      ++|+|||.|.||..+|..|...|.+|.+++|+...     .+..                 ...+. +.++.+|+|++++
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v   81 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV   81 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence            57999999999999999999999999999986421     1100                 12234 5678999999999


Q ss_pred             cCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          220 ALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       220 P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      |.. .....+ ......++++.++|.+.-| +-..+.+.+.+...++.
T Consensus        82 k~~-~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~  126 (341)
T PRK08229         82 KSA-ATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVL  126 (341)
T ss_pred             cCc-chHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEE
Confidence            854 445554 4455567888988888654 44556677777665543

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.94  E-value=6.1e-05  Score=70.51  Aligned_cols=127  Identities=18%  Similarity=0.206  Sum_probs=88.2

Q ss_pred             ccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073          157 SKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML  235 (331)
Q Consensus       157 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~  235 (331)
                      .++.||++.|||- ..+|+.+|..|...|+.|+.+...        ..+|.+..++||+|++++.-    .++|..+.  
T Consensus       155 i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~--------T~~L~~~~~~ADIvV~AvGk----p~~i~~~~--  220 (288)
T PRK14171        155 PNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK--------THNLSSITSKADIVVAAIGS----PLKLTAEY--  220 (288)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------CCCHHHHHhhCCEEEEccCC----CCccCHHH--
Confidence            4689999999995 567999999999999999876532        24699999999999999862    35888877  


Q ss_pred             cCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHH
Q 020073          236 ALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNL  315 (331)
Q Consensus       236 ~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl  315 (331)
                       .|+|+++||+|--.+          .+|++   .-||-...-      .. .=-.+||=-||.-.-+..-+.+.+++-.
T Consensus       221 -vk~GavVIDvGin~~----------~~gkl---~GDVd~~~v------~~-~a~~iTPVPGGVGp~T~a~L~~N~v~a~  279 (288)
T PRK14171        221 -FNPESIVIDVGINRI----------SGNKI---IGDVDFENV------KS-KVKYITPVPGGIGPMTIAFLLKNTVKAF  279 (288)
T ss_pred             -cCCCCEEEEeecccc----------CCCCe---ECCccHHHH------Hh-hceEeCCCCCCcHHHHHHHHHHHHHHHH
Confidence             599999999984332          24454   346631111      00 0126899888876655555555555444


Q ss_pred             HHH
Q 020073          316 EAL  318 (331)
Q Consensus       316 ~~~  318 (331)
                      ++.
T Consensus       280 ~~~  282 (288)
T PRK14171        280 KDS  282 (288)
T ss_pred             HHH
Confidence            443

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.92  E-value=1.7e-05  Score=69.85  Aligned_cols=131  Identities=15%  Similarity=0.182  Sum_probs=75.4

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------------CC-------------ccccCCHHhhhcCCCEE
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------------VP-------------YAFYSNVCELAANSDAL  215 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~~-------------~~~~~~l~ell~~aDiV  215 (331)
                      ++|+|||+|.+|..+|..+...|++|+++|.+.+.             .+             .....+..+.+++||++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~   80 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV   80 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence            58999999999999999999999999999976542             00             01234677889999999


Q ss_pred             EEeccCChhhhhhc--------cHHHHhcCCCCcEEEEcCCCCccCHH-HHHHHHHhCCceEEEee-cCCCCCCCC----
Q 020073          216 IICCALTDQTRRMI--------NREVMLALGKEGIIVNVGRGAVIDEN-EMVRCLVRGEIAGAGLD-VFENEPYVP----  281 (331)
Q Consensus       216 ~l~~P~t~~t~~li--------~~~~l~~mk~ga~lIn~srg~~vd~~-al~~aL~~~~i~ga~lD-V~~~EP~~~----  281 (331)
                      ++|+|......+-.        -......++++.++|.-|.-.+=..+ -+...|++....+.-++ +|-+|=..+    
T Consensus        81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~  160 (185)
T PF03721_consen   81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI  160 (185)
T ss_dssp             EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred             EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence            99998433222221        23445567899999999987775555 34455554332111111 244554433    


Q ss_pred             CccccCCceEE
Q 020073          282 KELLELDNVVL  292 (331)
Q Consensus       282 ~~L~~~~nvil  292 (331)
                      .++...|+|++
T Consensus       161 ~d~~~~~rvV~  171 (185)
T PF03721_consen  161 EDFRNPPRVVG  171 (185)
T ss_dssp             HHHHSSSEEEE
T ss_pred             hhccCCCEEEE
Confidence            24778888853

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.92  E-value=4.5e-05  Score=71.25  Aligned_cols=120  Identities=13%  Similarity=0.160  Sum_probs=84.7

Q ss_pred             CccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.||++.||| -..+|+.+|..|...|+.|+.+...        ..++.+..++||+|++++.    ..+++..++ 
T Consensus       154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~--------T~~l~~~~~~ADIvIsAvG----k~~~i~~~~-  220 (284)
T PRK14177        154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK--------TQNLPSIVRQADIIVGAVG----KPEFIKADW-  220 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------CCCHHHHHhhCCEEEEeCC----CcCccCHHH-
Confidence            3468999999999 5568999999999999999987642        2478999999999999986    345788777 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN  314 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n  314 (331)
                        .|+|+++||+|--.              .+   .-||-..+      ... .--.+||--||.-.-+..-+.+.+++.
T Consensus       221 --ik~gavVIDvGin~--------------~~---~GDVd~~~------v~~-~a~~iTPVPGGVGp~T~a~L~~N~~~a  274 (284)
T PRK14177        221 --ISEGAVLLDAGYNP--------------GN---VGDIEISK------AKD-KSSFYTPVPGGVGPMTIAVLLLQTLYS  274 (284)
T ss_pred             --cCCCCEEEEecCcc--------------cc---cCCcCHHH------Hhh-hccEecCCCCCChHHHHHHHHHHHHHH
Confidence              59999999998433              11   22442111      111 123699998887665544444444433

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.91  E-value=8.6e-05  Score=69.68  Aligned_cols=102  Identities=20%  Similarity=0.247  Sum_probs=71.0

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCc-----------cccCCHHhhhcCCCEEEEeccCChhh
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPY-----------AFYSNVCELAANSDALIICCALTDQT  225 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~-----------~~~~~l~ell~~aDiV~l~~P~t~~t  225 (331)
                      +|+|||.|.||..+|..|...|.+|.+++|+.+.      .+.           ....+..++ +.+|+|++++|.. ++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~~   79 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-QL   79 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-cH
Confidence            6999999999999999999989999999885433      111           112345555 8899999999854 44


Q ss_pred             hhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceE
Q 020073          226 RRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAG  268 (331)
Q Consensus       226 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~g  268 (331)
                      ..++ +.....+.+++.+|...-| +-.++.+.+.+....+.+
T Consensus        80 ~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~  120 (304)
T PRK06522         80 PAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLG  120 (304)
T ss_pred             HHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEE
Confidence            5444 3344456677888877776 334566666666555543

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.90  E-value=8.3e-05  Score=69.98  Aligned_cols=131  Identities=17%  Similarity=0.182  Sum_probs=90.7

Q ss_pred             CccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.||++.|||- ..+|+.+|..|...|+.|+.+...        ..++.+..++||+|+++++-    .+++..++ 
T Consensus       153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~--------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~-  219 (297)
T PRK14186        153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR--------TQDLASITREADILVAAAGR----PNLIGAEM-  219 (297)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------CCCHHHHHhhCCEEEEccCC----cCccCHHH-
Confidence            34789999999995 567999999999999999877432        24799999999999999873    35788877 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN  314 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n  314 (331)
                        +|+|+++||+|--.+.+..      ++|++   .-||-..+      ..+. --.+||--||.-.-+..-+.+.+++-
T Consensus       220 --ik~gavVIDvGin~~~~~~------~~gkl---~GDvd~~~------v~~~-a~~iTPVPGGVGp~T~a~L~~Nl~~a  281 (297)
T PRK14186        220 --VKPGAVVVDVGIHRLPSSD------GKTRL---CGDVDFEE------VEPV-AAAITPVPGGVGPMTVTMLLVNTVLS  281 (297)
T ss_pred             --cCCCCEEEEeccccccccc------cCCce---eCCccHHH------HHhh-ceEecCCCCCchHHHHHHHHHHHHHH
Confidence              5999999999965532211      13444   35663211      1111 23699998887765555555555444


Q ss_pred             HHH
Q 020073          315 LEA  317 (331)
Q Consensus       315 l~~  317 (331)
                      .++
T Consensus       282 ~~~  284 (297)
T PRK14186        282 WQK  284 (297)
T ss_pred             HHH
Confidence            443

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.90  E-value=7.9e-05  Score=69.46  Aligned_cols=116  Identities=22%  Similarity=0.311  Sum_probs=83.1

Q ss_pred             ccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073          157 SKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML  235 (331)
Q Consensus       157 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~  235 (331)
                      .++.||++.|||- ..+|+.+|..|...|+.|+.+...        ..++.+..++||+|+++++.    .++|..+.  
T Consensus       154 i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~--------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~--  219 (278)
T PRK14172        154 IDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK--------TKNLKEVCKKADILVVAIGR----PKFIDEEY--  219 (278)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------CCCHHHHHhhCCEEEEcCCC----cCccCHHH--
Confidence            4689999999995 567999999999999999887642        24799999999999999863    35788877  


Q ss_pred             cCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHH
Q 020073          236 ALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLC  308 (331)
Q Consensus       236 ~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~  308 (331)
                       .|+|+++||+|--.+           .|++   .-||-..+      ..+ ---.+||--||.-.-+..-+.
T Consensus       220 -ik~gavVIDvGin~~-----------~gkl---~GDvd~~~------v~~-~a~~iTPVPGGVGp~T~a~L~  270 (278)
T PRK14172        220 -VKEGAIVIDVGTSSV-----------NGKI---TGDVNFDK------VID-KASYITPVPGGVGSLTTTLLI  270 (278)
T ss_pred             -cCCCcEEEEeecccc-----------CCce---eeeccHHH------HHh-hccEecCCCCCccHHHHHHHH
Confidence             599999999974332           2454   35662111      111 123589998887664444333

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.89  E-value=5.7e-05  Score=70.57  Aligned_cols=127  Identities=19%  Similarity=0.235  Sum_probs=88.1

Q ss_pred             CccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.||++.|||- ..+|+.+|..|...|+.|+.+...        ..+|.+..++||+|+++++-    .++++.++ 
T Consensus       151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~--------T~~l~~~~~~ADIvI~AvG~----p~~i~~~~-  217 (282)
T PRK14169        151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK--------TRNLKQLTKEADILVVAVGV----PHFIGADA-  217 (282)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCC--------CCCHHHHHhhCCEEEEccCC----cCccCHHH-
Confidence            34689999999995 567999999999999999877432        24699999999999999863    35788876 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN  314 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n  314 (331)
                        +|+|+++||+|--.+          .+|++   .-||-..+-      .. .--.+||=-||.-.-+..-+.+.+++-
T Consensus       218 --vk~GavVIDvGin~~----------~~gkl---~GDVd~~~v------~~-~a~~iTPVPGGVGp~T~a~L~~N~~~a  275 (282)
T PRK14169        218 --VKPGAVVIDVGISRG----------ADGKL---LGDVDEAAV------AP-IASAITPVPGGVGPMTIASLMAQTVTL  275 (282)
T ss_pred             --cCCCcEEEEeecccc----------CCCCe---eecCcHHHH------Hh-hccEecCCCCCcHHHHHHHHHHHHHHH
Confidence              599999999985442          13454   356632111      11 123689977876655544444444444


Q ss_pred             HHH
Q 020073          315 LEA  317 (331)
Q Consensus       315 l~~  317 (331)
                      .++
T Consensus       276 ~~~  278 (282)
T PRK14169        276 AKR  278 (282)
T ss_pred             HHH
Confidence            333

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.89  E-value=5.3e-05  Score=70.76  Aligned_cols=123  Identities=20%  Similarity=0.236  Sum_probs=85.7

Q ss_pred             CccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.||++.|||- ..+|+.+|..|...|+.|+.+...        ..++.+..++||+|++++.    ..++++++. 
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~--------T~nl~~~~~~ADIvIsAvG----kp~~i~~~~-  218 (282)
T PRK14166        152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK--------TKDLSLYTRQADLIIVAAG----CVNLLRSDM-  218 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------CCCHHHHHhhCCEEEEcCC----CcCccCHHH-
Confidence            34689999999995 567999999999999999877542        2469999999999999986    345788876 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVG  313 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~  313 (331)
                        .|+|+++||+|--.+          .+|++   .-||-...      ..+ .--.+||=-||.-.-+..-+.+.+++
T Consensus       219 --vk~GavVIDvGin~~----------~~gkl---~GDVd~~~------v~~-~a~~iTPVPGGVGp~T~a~L~~N~v~  275 (282)
T PRK14166        219 --VKEGVIVVDVGINRL----------ESGKI---VGDVDFEE------VSK-KSSYITPVPGGVGPMTIAMLLENTVK  275 (282)
T ss_pred             --cCCCCEEEEeccccc----------CCCCe---eCCCCHHH------HHh-hccEecCCCCCchHHHHHHHHHHHHH
Confidence              599999999984332          13444   34553111      111 12368998788766554444444443

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.88  E-value=2.5e-05  Score=76.49  Aligned_cols=89  Identities=26%  Similarity=0.341  Sum_probs=68.0

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-------CC--ccccCCHHhhhcCCCEEEEeccCChhhhh
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-------VP--YAFYSNVCELAANSDALIICCALTDQTRR  227 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------~~--~~~~~~l~ell~~aDiV~l~~P~t~~t~~  227 (331)
                      +|+++++.|||+|.||+-+|+.|...|. +|++.+|+..+       .+  +....++.+.+.++|+|+++   |.+...
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvViss---Tsa~~~  251 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISS---TSAPHP  251 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEe---cCCCcc
Confidence            4899999999999999999999999995 78999999765       22  23346778899999999998   445566


Q ss_pred             hccHHHHhcCC---CCcEEEEcCCC
Q 020073          228 MINREVMLALG---KEGIIVNVGRG  249 (331)
Q Consensus       228 li~~~~l~~mk---~ga~lIn~srg  249 (331)
                      +|..+.+...-   +.-++||.+=.
T Consensus       252 ii~~~~ve~a~~~r~~~livDiavP  276 (414)
T COG0373         252 IITREMVERALKIRKRLLIVDIAVP  276 (414)
T ss_pred             ccCHHHHHHHHhcccCeEEEEecCC
Confidence            77766665531   11477777643

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.88  E-value=3.5e-05  Score=73.12  Aligned_cols=90  Identities=21%  Similarity=0.350  Sum_probs=69.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------------C-------CccccCCHHhhhcCCCEEEEeccC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------------V-------PYAFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~-------~~~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      ++|+|||.|..|.++|+.|...|.+|..|.|.++-             .       ......++.++++.||+|++.+| 
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP-   80 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP-   80 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC-
Confidence            57999999999999999999999999999875321             1       12335689999999999999999 


Q ss_pred             ChhhhhhccHHHHhcCCCCcEEEEcCCCCccC
Q 020073          222 TDQTRRMINREVMLALGKEGIIVNVGRGAVID  253 (331)
Q Consensus       222 t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd  253 (331)
                      +...+..+.. .-..++++..+|+++-|=-.+
T Consensus        81 s~~~r~v~~~-l~~~l~~~~~iv~~sKGie~~  111 (329)
T COG0240          81 SQALREVLRQ-LKPLLLKDAIIVSATKGLEPE  111 (329)
T ss_pred             hHHHHHHHHH-HhhhccCCCeEEEEeccccCC
Confidence            4445554422 224568999999999876554

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.87  E-value=4.1e-05  Score=73.50  Aligned_cols=94  Identities=24%  Similarity=0.366  Sum_probs=71.2

Q ss_pred             CCccCCCceEEEEec-ChHHHHHHHHHhh-CCC-EEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChh
Q 020073          155 LGSKLGGKRVGIVGL-GNIGLQVAKRLQA-FGC-NVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQ  224 (331)
Q Consensus       155 ~~~~l~g~~vgIiG~-G~IG~~~A~~l~~-~G~-~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~  224 (331)
                      ++.++.|+++.|+|. |.||+.+++.|.. .|. +++.++|+..+       .......++++.+.++|+|+.+..   .
T Consensus       149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts---~  225 (340)
T PRK14982        149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVAS---M  225 (340)
T ss_pred             hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCc---C
Confidence            355799999999998 8999999999974 564 88899987544       111123467899999999887753   2


Q ss_pred             hhh-hccHHHHhcCCCCcEEEEcCCCCccCH
Q 020073          225 TRR-MINREVMLALGKEGIIVNVGRGAVIDE  254 (331)
Q Consensus       225 t~~-li~~~~l~~mk~ga~lIn~srg~~vd~  254 (331)
                      ... .++++.   ++++.++||+|+..=||.
T Consensus       226 ~~~~~I~~~~---l~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        226 PKGVEIDPET---LKKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             CcCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence            334 378865   489999999999887775

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.86  E-value=6.3e-05  Score=70.26  Aligned_cols=78  Identities=21%  Similarity=0.319  Sum_probs=65.0

Q ss_pred             CccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.||++.|||- ..+|+.+|..|...|+.|+.+...        ..++.+..++||+|+++++-    .++|..++ 
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~--------T~dl~~~~k~ADIvIsAvGk----p~~i~~~~-  219 (282)
T PRK14180        153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF--------TTDLKSHTTKADILIVAVGK----PNFITADM-  219 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC--------CCCHHHHhhhcCEEEEccCC----cCcCCHHH-
Confidence            34689999999995 567999999999999999887542        24789999999999999863    35788866 


Q ss_pred             hcCCCCcEEEEcCC
Q 020073          235 LALGKEGIIVNVGR  248 (331)
Q Consensus       235 ~~mk~ga~lIn~sr  248 (331)
                        .|+|+++||+|-
T Consensus       220 --vk~gavVIDvGi  231 (282)
T PRK14180        220 --VKEGAVVIDVGI  231 (282)
T ss_pred             --cCCCcEEEEecc
Confidence              599999999984

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.84  E-value=7.6e-05  Score=71.12  Aligned_cols=83  Identities=16%  Similarity=0.118  Sum_probs=61.0

Q ss_pred             CCceEEEEecChHHHHHHHHHhh-CC-CEEEEECCCCCC-------C---C--ccccCCHHhhhcCCCEEEEeccCChhh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQA-FG-CNVLYNSRSKKP-------V---P--YAFYSNVCELAANSDALIICCALTDQT  225 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~-~G-~~V~~~~~~~~~-------~---~--~~~~~~l~ell~~aDiV~l~~P~t~~t  225 (331)
                      ..++++|||+|.+|+.+++.+.. ++ .+|.+|+|++++       .   +  .....++++++++||+|+.+.|..   
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---  200 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST---  200 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence            46899999999999999986553 45 579999998754       1   1  223467889999999998887644   


Q ss_pred             hhhccHHHHhcCCCCcEEEEcCC
Q 020073          226 RRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       226 ~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      ..++..+.   +++|+.+.-++.
T Consensus       201 ~pvl~~~~---l~~g~~i~~ig~  220 (314)
T PRK06141        201 EPLVRGEW---LKPGTHLDLVGN  220 (314)
T ss_pred             CCEecHHH---cCCCCEEEeeCC
Confidence            56676644   699995444443

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.83  E-value=7.4e-05  Score=70.15  Aligned_cols=123  Identities=17%  Similarity=0.225  Sum_probs=85.3

Q ss_pred             CccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.||++.|||- ..+|+.+|..|...|+.|+.+...        ..++.+..++||+|++++.-    .+++..++ 
T Consensus       155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~--------T~~l~~~~~~ADIvVsAvGk----p~~i~~~~-  221 (294)
T PRK14187        155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA--------TRDLADYCSKADILVAAVGI----PNFVKYSW-  221 (294)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCC--------CCCHHHHHhhCCEEEEccCC----cCccCHHH-
Confidence            34689999999995 567999999999999999887542        24689999999999999863    35788877 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhC---CceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRG---EIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELA  311 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~---~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~  311 (331)
                        .|+|+++||+|--.+-          .|   ++   .-||-..+      ... .--.+||=-||.-.-+..-+.+.+
T Consensus       222 --ik~gaiVIDVGin~~~----------~~~~~kl---~GDvd~e~------v~~-~a~~iTPVPGGVGp~T~a~L~~N~  279 (294)
T PRK14187        222 --IKKGAIVIDVGINSIE----------EGGVKKF---VGDVDFAE------VKK-KASAITPVPGGVGPMTIAFLMVNT  279 (294)
T ss_pred             --cCCCCEEEEecccccC----------CCCccce---eCCccHHH------Hhh-hccEecCCCCCChHHHHHHHHHHH
Confidence              4899999999854421          12   33   45662111      111 123589987776655444444444


Q ss_pred             HH
Q 020073          312 VG  313 (331)
Q Consensus       312 ~~  313 (331)
                      ++
T Consensus       280 ~~  281 (294)
T PRK14187        280 VI  281 (294)
T ss_pred             HH
Confidence            43

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.83  E-value=6.9e-05  Score=71.92  Aligned_cols=128  Identities=20%  Similarity=0.233  Sum_probs=86.8

Q ss_pred             CccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.||++.||| -..+|+.+|..|...|+.|+.+...        ..++.+..++||||+.++.    ..++|..+. 
T Consensus       226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~--------T~nl~~~~r~ADIVIsAvG----kp~~i~~d~-  292 (364)
T PLN02616        226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------TKNPEEITREADIIISAVG----QPNMVRGSW-  292 (364)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC--------CCCHHHHHhhCCEEEEcCC----CcCcCCHHH-
Confidence            3468999999999 4567999999999999999887532        2479999999999999986    345788877 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhC-CceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRG-EIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVG  313 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~-~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~  313 (331)
                        .|+|+++||+|--.+.+..     =.+| +   ..-||-..+-.   +.    --.+||=-||.-.-+..-+.+.+++
T Consensus       293 --vK~GAvVIDVGIn~~~~~~-----~~~g~k---lvGDVdfe~v~---~~----as~ITPVPGGVGpmTva~Ll~N~~~  355 (364)
T PLN02616        293 --IKPGAVVIDVGINPVEDAS-----SPRGYR---LVGDVCYEEAC---KV----ASAVTPVPGGVGPMTIAMLLSNTLT  355 (364)
T ss_pred             --cCCCCEEEecccccccccc-----ccCCCe---EEecCcHHHHH---hh----ccccCCCCCchHHHHHHHHHHHHHH
Confidence              5999999999854321100     0113 3   35676432211   00    1258888888766554444444443

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.83  E-value=5.1e-05  Score=72.67  Aligned_cols=82  Identities=16%  Similarity=0.205  Sum_probs=63.5

Q ss_pred             CceEEEEecChHHHHHHHHHhh-C-CCEEEEECCCCCC----------CC--ccccCCHHhhhcCCCEEEEeccCChhhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQA-F-GCNVLYNSRSKKP----------VP--YAFYSNVCELAANSDALIICCALTDQTR  226 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~-~-G~~V~~~~~~~~~----------~~--~~~~~~l~ell~~aDiV~l~~P~t~~t~  226 (331)
                      -+++||||+|.+|+..++.+.. + .-+|.+|+|+.++          .+  .....+.++++++||+|++|+|.+   .
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~  204 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---K  204 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---C
Confidence            4789999999999998877654 2 2478999998764          11  223578999999999999998754   4


Q ss_pred             hhccHHHHhcCCCCcEEEEcCC
Q 020073          227 RMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      .++..+.   +|||+.+..+|.
T Consensus       205 P~~~~~~---l~~g~~v~~vGs  223 (325)
T TIGR02371       205 PVVKADW---VSEGTHINAIGA  223 (325)
T ss_pred             cEecHHH---cCCCCEEEecCC
Confidence            6776655   599999998884

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.82  E-value=9.6e-05  Score=69.55  Aligned_cols=101  Identities=21%  Similarity=0.318  Sum_probs=70.9

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCc-------------cccCCHHhhhcCCCEEEEeccCCh
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPY-------------AFYSNVCELAANSDALIICCALTD  223 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~-------------~~~~~l~ell~~aDiV~l~~P~t~  223 (331)
                      +|+|||.|.||..+|..|...|.+|.+++| .+.      .+.             ....+..++...+|+|++++|.. 
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~-   79 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY-   79 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc-
Confidence            699999999999999999998999999988 321      110             01234556678999999999854 


Q ss_pred             hhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          224 QTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       224 ~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      .+...+ +.....++++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus        80 ~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~  121 (305)
T PRK12921         80 QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL  121 (305)
T ss_pred             CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence            344444 3333446778888877555 44567777777665544

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.82  E-value=9.2e-05  Score=69.69  Aligned_cols=135  Identities=20%  Similarity=0.190  Sum_probs=92.8

Q ss_pred             CccCCCceEEEEecC-hHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGLG-NIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+...        ..++.+.+++||+|+.++.-    .+++..+. 
T Consensus       162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------T~nl~~~~~~ADIvv~AvGk----~~~i~~~~-  228 (299)
T PLN02516        162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------TPDPESIVREADIVIAAAGQ----AMMIKGDW-  228 (299)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------CCCHHHHHhhCCEEEEcCCC----cCccCHHH-
Confidence            347899999999955 57999999999999999887542        24699999999999999853    36888877 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhC-CceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRG-EIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVG  313 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~-~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~  313 (331)
                        .|+|+++||+|--.+-+.     ...+| +   ..-||-..+-       ...--.+||=-||.-.-+..-+.+.+++
T Consensus       229 --vk~gavVIDvGin~~~~~-----~~~~g~k---l~GDvd~e~v-------~~~a~~iTPVPGGVGp~T~a~L~~N~v~  291 (299)
T PLN02516        229 --IKPGAAVIDVGTNAVSDP-----SKKSGYR---LVGDVDFAEV-------SKVAGWITPVPGGVGPMTVAMLLKNTVD  291 (299)
T ss_pred             --cCCCCEEEEeeccccCcc-----cccCCCc---eEcCcChHHh-------hhhceEecCCCCCchHHHHHHHHHHHHH
Confidence              599999999985442211     11123 3   3456642111       0012258998788776666666666665


Q ss_pred             HHHHHHc
Q 020073          314 NLEALFS  320 (331)
Q Consensus       314 nl~~~~~  320 (331)
                      -.+++|+
T Consensus       292 a~~~~~~  298 (299)
T PLN02516        292 GAKRVFA  298 (299)
T ss_pred             HHHHHhh
Confidence            5555553

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.81  E-value=7.9e-05  Score=71.39  Aligned_cols=90  Identities=17%  Similarity=0.223  Sum_probs=63.0

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCCCCcccc-CCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKPVPYAFY-SNVCELAANSDALIICCALTDQTRRMINREVML  235 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~~~~~~-~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~  235 (331)
                      ++.|+++.|||.|.||+.+|+.|...|. +|++.+|+.....+... ...-+...++|+|+.|...|......+..+.++
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~  250 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWESLA  250 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHh
Confidence            5899999999999999999999999996 69999998754221110 011245679999999754344445566666665


Q ss_pred             cCCCCcEEEEcCC
Q 020073          236 ALGKEGIIVNVGR  248 (331)
Q Consensus       236 ~mk~ga~lIn~sr  248 (331)
                      ..++ -++||.+=
T Consensus       251 ~~~~-r~~iDLAv  262 (338)
T PRK00676        251 DIPD-RIVFDFNV  262 (338)
T ss_pred             hccC-cEEEEecC
Confidence            4332 36777653

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.81  E-value=9.2e-05  Score=69.13  Aligned_cols=123  Identities=15%  Similarity=0.131  Sum_probs=86.5

Q ss_pred             ccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073          157 SKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML  235 (331)
Q Consensus       157 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~  235 (331)
                      .++.||++.|||- ..+|+.+|..|...|+.|+.+...        ..++.+..++||+|+++++-    .++|..++  
T Consensus       153 i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~--------T~nl~~~~~~ADIvI~AvGk----~~~i~~~~--  218 (282)
T PRK14182        153 VDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR--------TADLAGEVGRADILVAAIGK----AELVKGAW--  218 (282)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------CCCHHHHHhhCCEEEEecCC----cCccCHHH--
Confidence            4689999999995 567999999999889999887542        24689999999999999863    46888877  


Q ss_pred             cCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073          236 ALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN  314 (331)
Q Consensus       236 ~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n  314 (331)
                       .|+|+++||+|--.+.          +|++   .-||-..+      .... --.+||=-||.-.-+..-+.+.+++.
T Consensus       219 -ik~gaiVIDvGin~~~----------~gkl---~GDVd~~~------v~~~-a~~iTPVPGGVGp~T~a~L~~N~~~~  276 (282)
T PRK14182        219 -VKEGAVVIDVGMNRLA----------DGKL---VGDVEFAA------AAAR-ASAITPVPGGVGPMTRAMLLVNTVEL  276 (282)
T ss_pred             -cCCCCEEEEeeceecC----------CCCe---eCCCCHHH------HHhh-ccEecCCCCCChHHHHHHHHHHHHHH
Confidence             5899999999855432          2454   34663211      1111 12589977776665555444444443

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.81  E-value=5.4e-05  Score=66.84  Aligned_cols=93  Identities=17%  Similarity=0.157  Sum_probs=60.6

Q ss_pred             CccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC-------C----Cc-------cccCCHHhhhcCCCEEE
Q 020073          156 GSKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP-------V----PY-------AFYSNVCELAANSDALI  216 (331)
Q Consensus       156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~----~~-------~~~~~l~ell~~aDiV~  216 (331)
                      +.+++++++.|+|. |.+|+.+++.+...|.+|..++|+..+       .    +.       ....++.+.++++|+|+
T Consensus        23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi  102 (194)
T cd01078          23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF  102 (194)
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence            34578999999995 999999999999999999999887543       0    00       00123346778888888


Q ss_pred             EeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCcc
Q 020073          217 ICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVI  252 (331)
Q Consensus       217 l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~v  252 (331)
                      .+.|....+  .+..  -...+++.+++|+.+..-+
T Consensus       103 ~at~~g~~~--~~~~--~~~~~~~~vv~D~~~~~~~  134 (194)
T cd01078         103 AAGAAGVEL--LEKL--AWAPKPLAVAADVNAVPPV  134 (194)
T ss_pred             ECCCCCcee--chhh--hcccCceeEEEEccCCCCC
Confidence            887755331  1111  1123446677776665543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.80  E-value=9.8e-05  Score=69.05  Aligned_cols=122  Identities=14%  Similarity=0.207  Sum_probs=87.4

Q ss_pred             CccCCCceEEEEe-cChHHHHHHHHHhh--CCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHH
Q 020073          156 GSKLGGKRVGIVG-LGNIGLQVAKRLQA--FGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINRE  232 (331)
Q Consensus       156 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~--~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~  232 (331)
                      +.++.||++.||| -+.+|+.+|..|..  .|+.|+.+...        ..++.+.+++||+|++++.-.    ++|..+
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------T~~l~~~~k~ADIvV~AvGkp----~~i~~~  220 (284)
T PRK14193        153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------TRDLAAHTRRADIIVAAAGVA----HLVTAD  220 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------CCCHHHHHHhCCEEEEecCCc----CccCHH
Confidence            4479999999999 56789999999987  78999887542        247999999999999998633    578887


Q ss_pred             HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHH
Q 020073          233 VMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAV  312 (331)
Q Consensus       233 ~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~  312 (331)
                      +   +|+|+++||+|.-.+          .+|++   .-||- .+      ..+.. -.+||--||.-.-+..-+.+.++
T Consensus       221 ~---ik~GavVIDvGin~~----------~~gkl---~GDvd-~~------v~~~a-~~iTPVPGGVGp~T~a~L~~N~~  276 (284)
T PRK14193        221 M---VKPGAAVLDVGVSRA----------GDGKL---VGDVH-PD------VWEVA-GAVSPNPGGVGPMTRAFLLTNVV  276 (284)
T ss_pred             H---cCCCCEEEEcccccc----------CCCcE---EeecC-Hh------HHhhC-CEEeCCCCChhHHHHHHHHHHHH
Confidence            7   599999999996553          34554   45664 11      11111 26899988876655444444444


Q ss_pred             H
Q 020073          313 G  313 (331)
Q Consensus       313 ~  313 (331)
                      +
T Consensus       277 ~  277 (284)
T PRK14193        277 E  277 (284)
T ss_pred             H
Confidence            3

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.80  E-value=4.8e-05  Score=71.22  Aligned_cols=93  Identities=19%  Similarity=0.160  Sum_probs=62.4

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCC-CEEEEECCCCCC-------CCcc---cc-CCHHhhhcCCCEEEEeccCChhh
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFG-CNVLYNSRSKKP-------VPYA---FY-SNVCELAANSDALIICCALTDQT  225 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~-------~~~~---~~-~~l~ell~~aDiV~l~~P~t~~t  225 (331)
                      ++.++++.|+|.|.+|++++..|...| .+|++++|+.++       ....   .. .++.+.+.++|+|+.++|..-..
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~  199 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG  199 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC
Confidence            577899999999999999999999999 689999998654       0100   01 13456778899999999876321


Q ss_pred             hhhccHHHHhcCCCCcEEEEcCCCC
Q 020073          226 RRMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       226 ~~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                      ..-...-....++++++++++.-..
T Consensus       200 ~~~~~~~~~~~l~~~~~v~DivY~P  224 (278)
T PRK00258        200 ELPLPPLPLSLLRPGTIVYDMIYGP  224 (278)
T ss_pred             CCCCCCCCHHHcCCCCEEEEeecCC
Confidence            1000011123356667777765533

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.79  E-value=4.6e-05  Score=75.24  Aligned_cols=86  Identities=15%  Similarity=0.307  Sum_probs=63.3

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-------CC-c--cccCCHHhhhcCCCEEEEeccCChhhh
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-------VP-Y--AFYSNVCELAANSDALIICCALTDQTR  226 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------~~-~--~~~~~l~ell~~aDiV~l~~P~t~~t~  226 (331)
                      ++.|+++.|||.|.||+.+++.|...|. +|++++|+..+       .+ .  ..+.++.+++.++|+|+.|++.   ..
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a---~~  254 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNV---LE  254 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCC---CC
Confidence            5889999999999999999999999996 79999998654       11 1  1235567789999999999654   34


Q ss_pred             hhccHHHHhcCCCCcEEEEcCC
Q 020073          227 RMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      .+|..+.+.  .+..++||.+=
T Consensus       255 ~vi~~~~~~--~~~~~~iDLav  274 (414)
T PRK13940        255 YIVTCKYVG--DKPRVFIDISI  274 (414)
T ss_pred             eeECHHHhC--CCCeEEEEeCC
Confidence            566665542  22346666653

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.79  E-value=8.4e-05  Score=71.01  Aligned_cols=133  Identities=17%  Similarity=0.187  Sum_probs=89.1

Q ss_pred             CccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.||++.|||- ..+|+.+|..|...|+.|..+...        ..++.+..++||||+.++.-    .+++..++ 
T Consensus       209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~--------T~nl~~~~~~ADIvIsAvGk----p~~v~~d~-  275 (345)
T PLN02897        209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF--------TKDPEQITRKADIVIAAAGI----PNLVRGSW-  275 (345)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCC--------CCCHHHHHhhCCEEEEccCC----cCccCHHH-
Confidence            44799999999995 457999999999999999876532        24689999999999999863    35788877 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN  314 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n  314 (331)
                        +|+|+++||+|--.+-+..     =++|.  ...-||...+-.      . ---.+||=-||.-.-+..-+.+.+++.
T Consensus       276 --vk~GavVIDVGin~~~~~~-----~~~g~--klvGDVdfe~v~------~-~as~iTPVPGGVGpmTvamLm~N~~~a  339 (345)
T PLN02897        276 --LKPGAVVIDVGTTPVEDSS-----CEFGY--RLVGDVCYEEAL------G-VASAITPVPGGVGPMTITMLLCNTLDA  339 (345)
T ss_pred             --cCCCCEEEEcccccccccc-----ccCCC--eeEecccHHHHH------h-hccccCCCCCchhHHHHHHHHHHHHHH
Confidence              5999999999854321100     01131  245677533221      0 012589987886665555555544444


Q ss_pred             HHH
Q 020073          315 LEA  317 (331)
Q Consensus       315 l~~  317 (331)
                      .++
T Consensus       340 ~~~  342 (345)
T PLN02897        340 AKR  342 (345)
T ss_pred             HHH
Confidence            443

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.78  E-value=9.9e-05  Score=71.15  Aligned_cols=89  Identities=17%  Similarity=0.199  Sum_probs=65.4

Q ss_pred             eEEEEecChHHHHHHHHHhhCC--------CEEEEECCCC-----C----------C---C-C------ccccCCHHhhh
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFG--------CNVLYNSRSK-----K----------P---V-P------YAFYSNVCELA  209 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G--------~~V~~~~~~~-----~----------~---~-~------~~~~~~l~ell  209 (331)
                      +|+|||.|+.|.++|..+...|        .+|..|.|..     .          .   . +      .....++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            5899999999999999998767        8999887622     0          0   1 1      12336789999


Q ss_pred             cCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccC
Q 020073          210 ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVID  253 (331)
Q Consensus       210 ~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd  253 (331)
                      +.||+|++++|. ...+.++ .+.-..++++..+|+++-|=-.+
T Consensus        81 ~~ADiIIlAVPs-~~i~~vl-~~l~~~l~~~~~iVs~tKGie~~  122 (342)
T TIGR03376        81 KGADILVFVIPH-QFLEGIC-KQLKGHVKPNARAISCIKGLEVS  122 (342)
T ss_pred             hcCCEEEEECCh-HHHHHHH-HHHHhhcCCCCEEEEEeCCcccC
Confidence            999999999994 3444444 33444578889999998885443

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.78  E-value=0.00012  Score=68.64  Aligned_cols=127  Identities=22%  Similarity=0.214  Sum_probs=84.6

Q ss_pred             CccCCCceEEEEec-ChHHHHHHHHHhhC----CCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073          156 GSKLGGKRVGIVGL-GNIGLQVAKRLQAF----GCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~----G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~  230 (331)
                      +.++.||++.|||- ..+|+.+|..|...    ++.|+.+...        ..++.+.+++||+|+++++-    .+++.
T Consensus       148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~--------T~~l~~~~~~ADIvV~AvG~----p~~i~  215 (287)
T PRK14181        148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ--------SENLTEILKTADIIIAAIGV----PLFIK  215 (287)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC--------CCCHHHHHhhCCEEEEccCC----cCccC
Confidence            34689999999995 56799999999887    7888877532        24799999999999999863    35788


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHH
Q 020073          231 REVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCEL  310 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~  310 (331)
                      .++   .|+|+++||+|--.+.+..      .+|.  ...-||-..+-.      . .--.+||=-||.-.-+..-+.+.
T Consensus       216 ~~~---ik~GavVIDvGin~~~~~~------~~g~--kl~GDVd~e~~~------~-~a~~iTPVPGGVGp~T~a~L~~N  277 (287)
T PRK14181        216 EEM---IAEKAVIVDVGTSRVPAAN------PKGY--ILVGDVDFNNVV------P-KCRAITPVPGGVGPMTVAMLMRN  277 (287)
T ss_pred             HHH---cCCCCEEEEeccccccccc------CCCC--eeEeccchHHHH------h-hcccccCCCCchHHHHHHHHHHH
Confidence            877   5999999999854432210      1121  245566422210      0 01247887787665444444433


Q ss_pred             HH
Q 020073          311 AV  312 (331)
Q Consensus       311 ~~  312 (331)
                      ++
T Consensus       278 ~~  279 (287)
T PRK14181        278 TW  279 (287)
T ss_pred             HH
Confidence            33

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=97.77  E-value=9e-05  Score=71.43  Aligned_cols=89  Identities=15%  Similarity=0.178  Sum_probs=70.5

Q ss_pred             HHHHHHHHhhCCCEEEEECCCCCC-----------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCc
Q 020073          173 GLQVAKRLQAFGCNVLYNSRSKKP-----------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG  241 (331)
Q Consensus       173 G~~~A~~l~~~G~~V~~~~~~~~~-----------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga  241 (331)
                      |..+|..|...|.+|++||++...           .+.....+..+++++||+|++|+|....++.++ ......+++|+
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~  110 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA  110 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence            789999999999999999997641           233344678888999999999999765577777 46777889999


Q ss_pred             EEEEcCCCCccCH-HHHHHHHH
Q 020073          242 IIVNVGRGAVIDE-NEMVRCLV  262 (331)
Q Consensus       242 ~lIn~srg~~vd~-~al~~aL~  262 (331)
                      ++||++.++.... +.+.+.+.
T Consensus       111 IVId~ST~~~~~~s~~l~~~l~  132 (342)
T PRK12557        111 VICNTCTVSPVVLYYSLEGELR  132 (342)
T ss_pred             EEEEecCCCHHHHHHHHHHHhc
Confidence            9999999876655 55666664

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.74  E-value=7.6e-05  Score=71.43  Aligned_cols=83  Identities=17%  Similarity=0.196  Sum_probs=61.2

Q ss_pred             EEEEecChHHHHHHHHHhh-CCCEEEEECC-CCCC-------CCc------------------cccCCHHhhhcCCCEEE
Q 020073          164 VGIVGLGNIGLQVAKRLQA-FGCNVLYNSR-SKKP-------VPY------------------AFYSNVCELAANSDALI  216 (331)
Q Consensus       164 vgIiG~G~IG~~~A~~l~~-~G~~V~~~~~-~~~~-------~~~------------------~~~~~l~ell~~aDiV~  216 (331)
                      |||+|+|+||+.+++.+.. -+++|++++. .++.       .++                  ....++++++.++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            6999999999999999764 4678776543 2221       011                  01236889999999999


Q ss_pred             EeccCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 020073          217 ICCALTDQTRRMINREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       217 l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg  249 (331)
                      .|+   +.+.+..+++.+.+|+.+++|+..-..
T Consensus        81 e~T---p~~~~~~na~~~~~~GakaVl~~~p~~  110 (333)
T TIGR01546        81 DAT---PGGIGAKNKPLYEKAGVKAIFQGGEKA  110 (333)
T ss_pred             ECC---CCCCChhhHHHHHhCCcCEEEECCCCC
Confidence            985   456778899999999999999875443

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.71  E-value=8.5e-05  Score=70.51  Aligned_cols=83  Identities=12%  Similarity=0.074  Sum_probs=64.5

Q ss_pred             CCceEEEEecChHHHHHHHHHhh-CCC-EEEEECCCCCC-------C---Cccc-cCCHHhhhcCCCEEEEeccCChhhh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQA-FGC-NVLYNSRSKKP-------V---PYAF-YSNVCELAANSDALIICCALTDQTR  226 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~-------~---~~~~-~~~l~ell~~aDiV~l~~P~t~~t~  226 (331)
                      ..++++|||.|.+|+..++.+.. ++. +|.+|+|+..+       .   +... ..++++++.++|+|+.|+|.+   .
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---~  200 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---T  200 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---C
Confidence            46799999999999999999864 665 69999998654       1   1111 357889999999999998755   4


Q ss_pred             hhccHHHHhcCCCCcEEEEcCCC
Q 020073          227 RMINREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~srg  249 (331)
                      .++..    .+|||+.++.+|.-
T Consensus       201 Pl~~~----~~~~g~hi~~iGs~  219 (304)
T PRK07340        201 PVYPE----AARAGRLVVAVGAF  219 (304)
T ss_pred             ceeCc----cCCCCCEEEecCCC
Confidence            67754    26999999999853

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.69  E-value=0.00016  Score=68.00  Aligned_cols=135  Identities=16%  Similarity=0.189  Sum_probs=90.6

Q ss_pred             CccCCCceEEEEe-cChHHHHHHHHHhhC----CCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073          156 GSKLGGKRVGIVG-LGNIGLQVAKRLQAF----GCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       156 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~----G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~  230 (331)
                      +.++.||++.||| -..+|+.+|..|...    ++.|+.+...        ..++.+..++||+|++++.    ..+++.
T Consensus       156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~--------T~~l~~~~~~ADIvVsAvG----kp~~i~  223 (297)
T PRK14168        156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR--------SKNLARHCQRADILIVAAG----VPNLVK  223 (297)
T ss_pred             CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC--------CcCHHHHHhhCCEEEEecC----CcCccC
Confidence            4578999999999 567899999999876    6888876432        2468999999999999985    335788


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHH
Q 020073          231 REVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCEL  310 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~  310 (331)
                      .+.   .|+|+++||+|--.+.+.      .++|+.. ..-||-..      ...+. --.+||=-||.-.-+..-+.+.
T Consensus       224 ~~~---ik~gavVIDvGin~~~~~------~~~g~~~-~~GDVdfe------~v~~~-a~~iTPVPGGVGp~T~a~L~~N  286 (297)
T PRK14168        224 PEW---IKPGATVIDVGVNRVGTN------ESTGKAI-LSGDVDFD------AVKEI-AGKITPVPGGVGPMTIAMLMRN  286 (297)
T ss_pred             HHH---cCCCCEEEecCCCccCcc------ccCCCcc-eeccccHH------HHHhh-ccEecCCCCCchHHHHHHHHHH
Confidence            877   599999999986543211      1234310 23455311      11111 1258998788776666666666


Q ss_pred             HHHHHHHHH
Q 020073          311 AVGNLEALF  319 (331)
Q Consensus       311 ~~~nl~~~~  319 (331)
                      +++..++++
T Consensus       287 ~~~a~~~~~  295 (297)
T PRK14168        287 TLKSAKFHL  295 (297)
T ss_pred             HHHHHHHHh
Confidence            665555554

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.68  E-value=0.00016  Score=70.18  Aligned_cols=91  Identities=16%  Similarity=0.228  Sum_probs=65.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhCC-------CEEEEECCCCC---------------C----CC------ccccCCHHhhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFG-------CNVLYNSRSKK---------------P----VP------YAFYSNVCELA  209 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G-------~~V~~~~~~~~---------------~----~~------~~~~~~l~ell  209 (331)
                      ++|+|||.|..|.++|..+...|       .+|..|.|...               .    .+      .....++.+++
T Consensus        12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav   91 (365)
T PTZ00345         12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV   91 (365)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence            58999999999999999998665       78888877653               0    01      12245788999


Q ss_pred             cCCCEEEEeccCChhhhhhccHHHHh--cCCCCcEEEEcCCCCccCH
Q 020073          210 ANSDALIICCALTDQTRRMINREVML--ALGKEGIIVNVGRGAVIDE  254 (331)
Q Consensus       210 ~~aDiV~l~~P~t~~t~~li~~~~l~--~mk~ga~lIn~srg~~vd~  254 (331)
                      +.||+|++++|. ...+.++ ++.-.  .+++++.+|+++-|=-.+.
T Consensus        92 ~~aDiIvlAVPs-q~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~t  136 (365)
T PTZ00345         92 EDADLLIFVIPH-QFLESVL-SQIKENNNLKKHARAISLTKGIIVEN  136 (365)
T ss_pred             hcCCEEEEEcCh-HHHHHHH-HHhccccccCCCCEEEEEeCCcccCC
Confidence            999999999994 3445444 22222  4566789999988754443

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.68  E-value=0.00017  Score=67.94  Aligned_cols=127  Identities=17%  Similarity=0.215  Sum_probs=84.1

Q ss_pred             ccCCCceEEEEec-ChHHHHHHHHHhh----CCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073          157 SKLGGKRVGIVGL-GNIGLQVAKRLQA----FGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       157 ~~l~g~~vgIiG~-G~IG~~~A~~l~~----~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      .++.||++.|||- ..+|+.+|..|..    .|..|..+...        ..++.+.+++||+|+.+++..    ++|..
T Consensus       155 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~--------t~~l~~~~~~ADIvI~Avg~~----~li~~  222 (295)
T PRK14174        155 IETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSA--------TKDIPSYTRQADILIAAIGKA----RFITA  222 (295)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCC--------chhHHHHHHhCCEEEEecCcc----CccCH
Confidence            4689999999995 5679999999976    57888776542        246899999999999998532    68998


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC-CceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHH
Q 020073          232 EVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG-EIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCEL  310 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~-~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~  310 (331)
                      +++   |+|+++||+|-..+.+.     .=++| ++   .-||-..+      .... --.+||=-||.-.-+..-+.+.
T Consensus       223 ~~v---k~GavVIDVgi~~~~~~-----~~~~g~kl---~GDVd~~~------v~~~-a~~iTPVPGGVGp~T~a~L~~N  284 (295)
T PRK14174        223 DMV---KPGAVVIDVGINRIEDP-----STKSGYRL---VGDVDYEG------VSAK-ASAITPVPGGVGPMTIAMLLKN  284 (295)
T ss_pred             HHc---CCCCEEEEeeccccccc-----cccCCCce---ECCcCHHH------HHhh-ccEecCCCCCchHHHHHHHHHH
Confidence            886   99999999985442110     00113 33   45653211      1111 1258998777665444444444


Q ss_pred             HHH
Q 020073          311 AVG  313 (331)
Q Consensus       311 ~~~  313 (331)
                      +++
T Consensus       285 l~~  287 (295)
T PRK14174        285 TLQ  287 (295)
T ss_pred             HHH
Confidence            443

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.68  E-value=0.00095  Score=63.44  Aligned_cols=107  Identities=19%  Similarity=0.199  Sum_probs=72.9

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----CCcc--------------ccCCHHhhhcCCCEEEEeccCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----VPYA--------------FYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~~~~--------------~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      .++|+|||.|.||..+|..|...|.+|.++.|+...    .+..              ...+. +.+..+|+|++|++..
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK~~   83 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLKTT   83 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEecCC
Confidence            358999999999999999999999999988886522    1100              01122 2467899999999854


Q ss_pred             hhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEe
Q 020073          223 DQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGL  271 (331)
Q Consensus       223 ~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~l  271 (331)
                       ++...+ +..-..+++++.++...-| +-.++.+.+.+...++.++..
T Consensus        84 -~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~~  129 (313)
T PRK06249         84 -ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGLC  129 (313)
T ss_pred             -ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEee
Confidence             333333 2333446778888877555 456777888887777665533

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.67  E-value=0.00018  Score=67.52  Aligned_cols=128  Identities=16%  Similarity=0.200  Sum_probs=84.0

Q ss_pred             CccCCCceEEEEec-ChHHHHHHHHHhhC----CCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073          156 GSKLGGKRVGIVGL-GNIGLQVAKRLQAF----GCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~----G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~  230 (331)
                      +.++.||++.|||- ..+|+.+|..|...    ++.|+.+...        ..++.+..++||+|+++++-    .++|.
T Consensus       152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~--------T~nl~~~~~~ADIvIsAvGk----p~~i~  219 (293)
T PRK14185        152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR--------SKNLKKECLEADIIIAALGQ----PEFVK  219 (293)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC--------CCCHHHHHhhCCEEEEccCC----cCccC
Confidence            34689999999995 56799999999876    6888876432        24799999999999999863    35788


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC-CceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHH
Q 020073          231 REVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG-EIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCE  309 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~-~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~  309 (331)
                      .++   .|+|+++||+|--.+.+.     .=++| +   ..-||-..+-.       ..--.+||=-||.-.-+..-+.+
T Consensus       220 ~~~---vk~gavVIDvGin~~~~~-----~~~~g~k---lvGDVdf~~v~-------~~a~~iTPVPGGVGp~T~a~L~~  281 (293)
T PRK14185        220 ADM---VKEGAVVIDVGTTRVPDA-----TRKSGFK---LTGDVKFDEVA-------PKCSYITPVPGGVGPMTIVSLMK  281 (293)
T ss_pred             HHH---cCCCCEEEEecCcccccc-----cccCCCe---eEcCCCHHHHH-------hhccEeCCCCCCchHHHHHHHHH
Confidence            766   599999999985442210     00113 3   34566321110       01125899878866544444444


Q ss_pred             HHHH
Q 020073          310 LAVG  313 (331)
Q Consensus       310 ~~~~  313 (331)
                      .+++
T Consensus       282 N~~~  285 (293)
T PRK14185        282 NTLL  285 (293)
T ss_pred             HHHH
Confidence            4433

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.67  E-value=0.00062  Score=63.26  Aligned_cols=126  Identities=21%  Similarity=0.290  Sum_probs=91.0

Q ss_pred             CccCCCceEEEEecChH-HHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGLGNI-GLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.+++|+++.|||-++| |+.+|..|...++.|.++...        ..++.+..++||+|++++-    -.+++.++. 
T Consensus       151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~--------T~~l~~~~k~ADIvv~AvG----~p~~i~~d~-  217 (283)
T COG0190         151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSR--------TKDLASITKNADIVVVAVG----KPHFIKADM-  217 (283)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCC--------CCCHHHHhhhCCEEEEecC----Ccccccccc-
Confidence            44799999999998875 899999999999999987643        2579999999999999974    346777655 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN  314 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n  314 (331)
                        .|+|+++|+++--.+-+          +++   .-||-..+       +....-.+||=-||.-.-+..-+.+.+++-
T Consensus       218 --vk~gavVIDVGinrv~~----------~kl---~GDVdf~~-------v~~~a~~iTPVPGGVGPmTvamLl~Nt~~a  275 (283)
T COG0190         218 --VKPGAVVIDVGINRVND----------GKL---VGDVDFDS-------VKEKASAITPVPGGVGPMTVAMLLENTLKA  275 (283)
T ss_pred             --ccCCCEEEecCCccccC----------Cce---EeeccHHH-------HHHhhcccCCCCCccCHHHHHHHHHHHHHH
Confidence              69999999998555333          555   45663322       222344689988887776555555444443


Q ss_pred             HH
Q 020073          315 LE  316 (331)
Q Consensus       315 l~  316 (331)
                      .+
T Consensus       276 ~~  277 (283)
T COG0190         276 AE  277 (283)
T ss_pred             HH
Confidence            33

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.67  E-value=0.00025  Score=65.99  Aligned_cols=103  Identities=16%  Similarity=0.077  Sum_probs=71.2

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------C---CccccCCHHh-hhcCCCEEEEeccCC--hhh
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------V---PYAFYSNVCE-LAANSDALIICCALT--DQT  225 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~---~~~~~~~l~e-ll~~aDiV~l~~P~t--~~t  225 (331)
                      ..+++++|+|.|.+|++++..+...|.+|.+++|+.++       .   +.....++++ ...++|+|+.++|..  +..
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~  194 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI  194 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence            45789999999999999999999999999999987643       0   1111223444 346799999999975  222


Q ss_pred             hh-hccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 020073          226 RR-MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       226 ~~-li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i  266 (331)
                      .. .++.   +.++++.+++++.-.....  .|.+..++..+
T Consensus       195 ~~~~~~~---~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~  231 (270)
T TIGR00507       195 DEPPVPA---EKLKEGMVVYDMVYNPGET--PFLAEAKSLGT  231 (270)
T ss_pred             CCCCCCH---HHcCCCCEEEEeccCCCCC--HHHHHHHHCCC
Confidence            11 2232   3478899999998766533  46666666544

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.65  E-value=0.00015  Score=67.80  Aligned_cols=78  Identities=22%  Similarity=0.339  Sum_probs=64.4

Q ss_pred             CccCCCceEEEEec-ChHHHHHHHHHhh----CCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073          156 GSKLGGKRVGIVGL-GNIGLQVAKRLQA----FGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~----~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~  230 (331)
                      +.++.||++.|||- ..+|+.+|..|..    .|++|..+...        ..++.+.+++||+|+.+++    ..++|.
T Consensus       152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~--------t~~l~~~~~~ADIVI~AvG----~p~li~  219 (286)
T PRK14184        152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSR--------TPDLAEECREADFLFVAIG----RPRFVT  219 (286)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCC--------chhHHHHHHhCCEEEEecC----CCCcCC
Confidence            34689999999995 5679999999987    78998876532        2479999999999999984    356788


Q ss_pred             HHHHhcCCCCcEEEEcCC
Q 020073          231 REVMLALGKEGIIVNVGR  248 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~sr  248 (331)
                      ++++   |+|+++||+|-
T Consensus       220 ~~~v---k~GavVIDVGi  234 (286)
T PRK14184        220 ADMV---KPGAVVVDVGI  234 (286)
T ss_pred             HHHc---CCCCEEEEeee
Confidence            8775   99999999983

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.64  E-value=0.00018  Score=68.90  Aligned_cols=83  Identities=12%  Similarity=0.108  Sum_probs=64.4

Q ss_pred             CCceEEEEecChHHHHHHHHHh-hCCC-EEEEECCCCCC-------C----Cc--cccCCHHhhhcCCCEEEEeccCChh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQ-AFGC-NVLYNSRSKKP-------V----PY--AFYSNVCELAANSDALIICCALTDQ  224 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~-~~G~-~V~~~~~~~~~-------~----~~--~~~~~l~ell~~aDiV~l~~P~t~~  224 (331)
                      ..++++|||.|.+|+..++.+. .++. +|.+|+|+..+       .    +.  ....++++++++||+|+.|+|.+  
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~--  205 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE--  205 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence            3578999999999999999987 4675 69999998754       1    11  22467899999999999998754  


Q ss_pred             hhhhccHHHHhcCCCCcEEEEcCC
Q 020073          225 TRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       225 t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                       ..+|..+.   +|+|+.+..++.
T Consensus       206 -~p~i~~~~---l~~g~~i~~vg~  225 (326)
T TIGR02992       206 -TPILHAEW---LEPGQHVTAMGS  225 (326)
T ss_pred             -CcEecHHH---cCCCcEEEeeCC
Confidence             46777665   689998887763

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.63  E-value=0.00029  Score=62.88  Aligned_cols=88  Identities=23%  Similarity=0.312  Sum_probs=66.7

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC---CCC----------C----------------Cc---cc--
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS---KKP----------V----------------PY---AF--  201 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~---~~~----------~----------------~~---~~--  201 (331)
                      ..|..++|+|+|+|.+|..+|+.|...|. +++.+|+.   ...          .                +.   ..  
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~   96 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD   96 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence            35888999999999999999999999999 68888876   211          0                00   00  


Q ss_pred             ----cCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEE
Q 020073          202 ----YSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVN  245 (331)
Q Consensus       202 ----~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn  245 (331)
                          ..++.++++++|+|+-| ..+.+++.++.......++...++..
T Consensus        97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~  143 (200)
T TIGR02354        97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA  143 (200)
T ss_pred             eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence                02345678899999998 57888999988888888877666664

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.61  E-value=0.00017  Score=69.08  Aligned_cols=82  Identities=17%  Similarity=0.143  Sum_probs=63.0

Q ss_pred             CCceEEEEecChHHHHHHHHHh-hCCC-EEEEECCCCCC-----C------Cc--cccCCHHhhhcCCCEEEEeccCChh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQ-AFGC-NVLYNSRSKKP-----V------PY--AFYSNVCELAANSDALIICCALTDQ  224 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~-~~G~-~V~~~~~~~~~-----~------~~--~~~~~l~ell~~aDiV~l~~P~t~~  224 (331)
                      ..++++|||.|.+|+..++.+. ..+. +|.+++|++++     .      +.  ..+.+++++++++|+|++|+|..  
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~--  203 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK--  203 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence            4678999999999999988764 4566 68899998654     0      11  23567899999999999998855  


Q ss_pred             hhhhccHHHHhcCCCCcEEEEcCC
Q 020073          225 TRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       225 t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                       ..++. +   .+|+|+.++.++.
T Consensus       204 -~p~i~-~---~l~~G~hV~~iGs  222 (325)
T PRK08618        204 -TPVFS-E---KLKKGVHINAVGS  222 (325)
T ss_pred             -CcchH-H---hcCCCcEEEecCC
Confidence             45665 4   4699999988865

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.58  E-value=0.00033  Score=65.97  Aligned_cols=127  Identities=18%  Similarity=0.191  Sum_probs=84.6

Q ss_pred             CccCCCceEEEEec-ChHHHHHHHHHhhC----CCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073          156 GSKLGGKRVGIVGL-GNIGLQVAKRLQAF----GCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~----G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~  230 (331)
                      +.++.||++.|||- ..+|+.+|..|...    ++.|..+...        ..++.+..++||+|++++-    ..+++.
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~--------T~~l~~~~~~ADIvIsAvG----kp~~i~  219 (297)
T PRK14167        152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR--------TDDLAAKTRRADIVVAAAG----VPELID  219 (297)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC--------CCCHHHHHhhCCEEEEccC----CcCccC
Confidence            34689999999995 56799999999865    7888876432        2478999999999999874    235888


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC-CceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHH
Q 020073          231 REVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG-EIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCE  309 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~-~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~  309 (331)
                      .++   +|+|+++||+|--.+-+..      ++| ++   .-||-..+-      .+. --.+||=-||.-.-+..-+.+
T Consensus       220 ~~~---ik~gaiVIDvGin~~~~~~------~~g~kl---~GDVd~e~v------~~~-a~~iTPVPGGVGpvT~a~L~~  280 (297)
T PRK14167        220 GSM---LSEGATVIDVGINRVDADT------EKGYEL---VGDVEFESA------KEK-ASAITPVPGGVGPMTRAMLLY  280 (297)
T ss_pred             HHH---cCCCCEEEEccccccCccc------ccCCce---eecCcHHHH------Hhh-ceEecCCCCCchHHHHHHHHH
Confidence            866   5999999999954421110      013 33   456642211      111 125899878866655444444


Q ss_pred             HHHH
Q 020073          310 LAVG  313 (331)
Q Consensus       310 ~~~~  313 (331)
                      .+++
T Consensus       281 N~~~  284 (297)
T PRK14167        281 NTVK  284 (297)
T ss_pred             HHHH
Confidence            4443

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=97.57  E-value=0.00074  Score=54.91  Aligned_cols=99  Identities=20%  Similarity=0.410  Sum_probs=69.3

Q ss_pred             ceEEEEe----cChHHHHHHHHHhhCCCEEEEECCCCCC-CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhc
Q 020073          162 KRVGIVG----LGNIGLQVAKRLQAFGCNVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLA  236 (331)
Q Consensus       162 ~~vgIiG----~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~  236 (331)
                      |+++|||    -|..|..+.+.|+..|++|+.+++.... .+...+.++.|.-...|++++++|.. .+..++++  +..
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~-~~~~~v~~--~~~   77 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPD-KVPEIVDE--AAA   77 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HH-HHHHHHHH--HHH
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHH-HHHHHHHH--HHH
Confidence            5799999    7899999999999999999999987766 56666789998558899999999843 44445532  233


Q ss_pred             CCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          237 LGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       237 mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      +..+.+++..+    -.++++.+..++..+.
T Consensus        78 ~g~~~v~~~~g----~~~~~~~~~a~~~gi~  104 (116)
T PF13380_consen   78 LGVKAVWLQPG----AESEELIEAAREAGIR  104 (116)
T ss_dssp             HT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred             cCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence            45678888887    6778888888888776

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=97.56  E-value=0.0006  Score=63.13  Aligned_cols=118  Identities=19%  Similarity=0.205  Sum_probs=73.7

Q ss_pred             HHHHHhhCC--CEEEEECCCCCC------CCcc--ccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEE
Q 020073          176 VAKRLQAFG--CNVLYNSRSKKP------VPYA--FYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVN  245 (331)
Q Consensus       176 ~A~~l~~~G--~~V~~~~~~~~~------~~~~--~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn  245 (331)
                      +|+.|+..|  .+|+++|+++..      .+..  ...+ .+.++++|+|++|+|.. .+..++ ++....+++|+++++
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~DlvvlavP~~-~~~~~l-~~~~~~~~~~~iv~D   77 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAVPVS-AIEDVL-EEIAPYLKPGAIVTD   77 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S-HH-HHHHHH-HHHHCGS-TTSEEEE
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcCCHH-HHHHHH-HHhhhhcCCCcEEEE
Confidence            577788777  699999988654      2221  1223 57899999999999954 455555 556667999999999


Q ss_pred             cCCCCccCHHHHHHHHHhCCceEEEe-ecCCCCCCC----CCccccCCceEEcCCCC
Q 020073          246 VGRGAVIDENEMVRCLVRGEIAGAGL-DVFENEPYV----PKELLELDNVVLQPHRA  297 (331)
Q Consensus       246 ~srg~~vd~~al~~aL~~~~i~ga~l-DV~~~EP~~----~~~L~~~~nvilTPH~a  297 (331)
                      ++.-+.--.+++.+.+.. .....+. =-|.+|-.-    ...|++-.++++||+-.
T Consensus        78 v~SvK~~~~~~~~~~~~~-~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~  133 (258)
T PF02153_consen   78 VGSVKAPIVEAMERLLPE-GVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED  133 (258)
T ss_dssp             --S-CHHHHHHHHHHHTS-SGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred             eCCCCHHHHHHHHHhcCc-ccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence            999887666666666662 2222222 234444211    23688889999999876

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.55  E-value=0.00025  Score=67.62  Aligned_cols=82  Identities=18%  Similarity=0.235  Sum_probs=63.8

Q ss_pred             CceEEEEecChHHHHHHHHHhh-CCC-EEEEECCCCCC----------CC--ccccCCHHhhhcCCCEEEEeccCChhhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQA-FGC-NVLYNSRSKKP----------VP--YAFYSNVCELAANSDALIICCALTDQTR  226 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~----------~~--~~~~~~l~ell~~aDiV~l~~P~t~~t~  226 (331)
                      -++++|||.|..|+..++.+.. +.. +|.+|+|++++          .+  .....+.++++++||+|+.++|   .+.
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~---s~~  204 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTP---SRE  204 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecC---CCC
Confidence            4689999999999999988764 333 79999998765          01  1224678999999999999866   445


Q ss_pred             hhccHHHHhcCCCCcEEEEcCC
Q 020073          227 RMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      .+++.+.   +|||+.++.+|.
T Consensus       205 P~~~~~~---l~~G~hi~~iGs  223 (315)
T PRK06823        205 PLLQAED---IQPGTHITAVGA  223 (315)
T ss_pred             ceeCHHH---cCCCcEEEecCC
Confidence            7887765   589999998873

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.53  E-value=0.00014  Score=69.29  Aligned_cols=86  Identities=20%  Similarity=0.192  Sum_probs=55.0

Q ss_pred             ceEEEEecChHHHHHHHHHhh-CCC-EEEEECCCCCC---------C---CccccCCHHhhhcCCCEEEEeccCChhhhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQA-FGC-NVLYNSRSKKP---------V---PYAFYSNVCELAANSDALIICCALTDQTRR  227 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~---------~---~~~~~~~l~ell~~aDiV~l~~P~t~~t~~  227 (331)
                      ++++|||.|..|+.-++.+.. ++. +|.+|+|++..         .   ......+.++++++||+|+.|+|.+..+ .
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P  207 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P  207 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence            589999999999999998764 555 79999998753         1   1233568999999999999997765432 6


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCCc
Q 020073          228 MINREVMLALGKEGIIVNVGRGAV  251 (331)
Q Consensus       228 li~~~~l~~mk~ga~lIn~srg~~  251 (331)
                      +++.+.   +++|+.++.++....
T Consensus       208 ~~~~~~---l~~g~hi~~iGs~~~  228 (313)
T PF02423_consen  208 VFDAEW---LKPGTHINAIGSYTP  228 (313)
T ss_dssp             SB-GGG---S-TT-EEEE-S-SST
T ss_pred             cccHHH---cCCCcEEEEecCCCC
Confidence            787654   699999999987543

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.53  E-value=0.0029  Score=57.61  Aligned_cols=103  Identities=27%  Similarity=0.315  Sum_probs=69.9

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C------------C----c--cccCCHHhh-hcC
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V------------P----Y--AFYSNVCEL-AAN  211 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~------------~----~--~~~~~l~el-l~~  211 (331)
                      .++.|++++|.|+|.+|+.+|+.|..+|++|+++..+...      .            +    +  ....+.+++ -.+
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~  106 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD  106 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence            4588999999999999999999999999999855433111      0            0    0  000122332 246


Q ss_pred             CCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          212 SDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      ||+++-|.+     .+.|+.+...+++ -.+++-.+-+.+-  ....+.|+++.+.
T Consensus       107 ~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~t--~~a~~~L~~rGi~  154 (227)
T cd01076         107 CDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPTT--PEADEILHERGVL  154 (227)
T ss_pred             ccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCCC--HHHHHHHHHCCCE
Confidence            888887764     3467777777786 4567777777774  4555778877775

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.52  E-value=0.00088  Score=64.82  Aligned_cols=137  Identities=23%  Similarity=0.332  Sum_probs=90.2

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCc---------------------cccCCHHhhhcCCCEE
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPY---------------------AFYSNVCELAANSDAL  215 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~---------------------~~~~~l~ell~~aDiV  215 (331)
                      .+|||||+|-||-.+|-.+...|++|+++|.+...     .+.                     +...+. +.++.||++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~-~~l~~~dv~   88 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDP-EELKECDVF   88 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecCh-hhcccCCEE
Confidence            79999999999999999999999999999987643     000                     011222 344599999


Q ss_pred             EEeccCChhhh-------hhcc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC--CceEEEeecC---CCCCCCC
Q 020073          216 IICCALTDQTR-------RMIN--REVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG--EIAGAGLDVF---ENEPYVP  281 (331)
Q Consensus       216 ~l~~P~t~~t~-------~li~--~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~--~i~ga~lDV~---~~EP~~~  281 (331)
                      ++|+| ||-+.       .+.+  +..-..||+|.++|==|.-..=..+.++.-|.+.  .+. ..-|.|   .+|-..+
T Consensus        89 iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P  166 (436)
T COG0677          89 IICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP  166 (436)
T ss_pred             EEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence            99998 33222       2222  2344558999988877776666667776666653  232 345654   4554222


Q ss_pred             -C---ccccCCceEEcCCCCCCcHHHHHH
Q 020073          282 -K---ELLELDNVVLQPHRAVFTSECFVD  306 (331)
Q Consensus       282 -~---~L~~~~nvilTPH~a~~t~~~~~~  306 (331)
                       +   ++...|+|     +||.|....+.
T Consensus       167 G~~~~el~~~~kV-----IgG~tp~~~e~  190 (436)
T COG0677         167 GNVLKELVNNPKV-----IGGVTPKCAEL  190 (436)
T ss_pred             CchhhhhhcCCce-----eecCCHHHHHH
Confidence             2   46667777     68888765443

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.52  E-value=0.0024  Score=64.26  Aligned_cols=128  Identities=15%  Similarity=0.190  Sum_probs=85.3

Q ss_pred             ceEEEEecChHHHHHHHHHhhC--CCEEEEECCCCCC-----CC--------------------ccccCCHHhhhcCCCE
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF--GCNVLYNSRSKKP-----VP--------------------YAFYSNVCELAANSDA  214 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~~~~~~~-----~~--------------------~~~~~~l~ell~~aDi  214 (331)
                      ++|+|||+|.+|..+|..|...  |++|+++|..+..     .+                    .....+..+.+++||+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv   81 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI   81 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence            5799999999999999999866  6889999976543     00                    1122356778899999


Q ss_pred             EEEeccCCh-----------hhhhhc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEee---cCCCCC
Q 020073          215 LIICCALTD-----------QTRRMI--NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLD---VFENEP  278 (331)
Q Consensus       215 V~l~~P~t~-----------~t~~li--~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lD---V~~~EP  278 (331)
                      +++|+|...           ....+.  -++.-..+++|.++|.-|.-.+=-.+.+...|.+.. .  +.|   +|-+|=
T Consensus        82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~--g~~f~v~~~PEr  158 (473)
T PLN02353         82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-K--GINFQILSNPEF  158 (473)
T ss_pred             EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-C--CCCeEEEECCCc
Confidence            999996321           111222  233455578999999888866666667777777631 1  123   245565


Q ss_pred             CCC----CccccCCceEE
Q 020073          279 YVP----KELLELDNVVL  292 (331)
Q Consensus       279 ~~~----~~L~~~~nvil  292 (331)
                      +.+    ..+...|+|++
T Consensus       159 l~~G~a~~d~~~p~riVi  176 (473)
T PLN02353        159 LAEGTAIEDLFKPDRVLI  176 (473)
T ss_pred             cCCCCcccccCCCCEEEE
Confidence            433    25777888874

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.52  E-value=0.002  Score=61.48  Aligned_cols=157  Identities=17%  Similarity=0.166  Sum_probs=120.5

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------CCccccCCHHhh---hcCCCEEEEeccCChhhhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------VPYAFYSNVCEL---AANSDALIICCALTDQTRR  227 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------~~~~~~~~l~el---l~~aDiV~l~~P~t~~t~~  227 (331)
                      ..+|+||++.|||.++-.....|+.|.+|+|+..+           .......|++++   ++....|++.+-.......
T Consensus         7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~   86 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ   86 (487)
T ss_pred             cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence            46899999999999999999999999999998765           112234567775   5778889988877777777


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHH
Q 020073          228 MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDL  307 (331)
Q Consensus       228 li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~  307 (331)
                      +| ++....|.+|-++|+-+-..--|...-.+.|.+..|-..+.-|...|--...    -|.  +   +-|.+.+++.++
T Consensus        87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~----GPS--l---MpGg~~~Awp~i  156 (487)
T KOG2653|consen   87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARY----GPS--L---MPGGSKEAWPHI  156 (487)
T ss_pred             HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCccccccc----CCc--c---CCCCChHHHHHH
Confidence            77 6677889999999999999999999999999999988899999988864221    011  1   336677888887


Q ss_pred             HHHHHHHHHHHHcCCCCCCCC
Q 020073          308 CELAVGNLEALFSNQPLLSPV  328 (331)
Q Consensus       308 ~~~~~~nl~~~~~g~~~~~~v  328 (331)
                      -.++..-....-.|+|....|
T Consensus       157 k~ifq~iaakv~~~epCc~wv  177 (487)
T KOG2653|consen  157 KDIFQKIAAKVSDGEPCCDWV  177 (487)
T ss_pred             HHHHHHHHHHhcCCCCCeeee
Confidence            777655444444677765544

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.51  E-value=0.0004  Score=66.96  Aligned_cols=86  Identities=21%  Similarity=0.229  Sum_probs=62.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------------C--Cc------cccCCHHhhhcCCCEEEEecc
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------------V--PY------AFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~--~~------~~~~~l~ell~~aDiV~l~~P  220 (331)
                      .+|+|||.|.+|..+|..|...| +|..|.++++.             .  +.      ....++.+.++.+|+|++++|
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp   86 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP   86 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence            57999999999999999999888 56666554211             1  11      123577888999999999999


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073          221 LTDQTRRMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       221 ~t~~t~~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                       +..++..+ ++.-..++++..+|++.-|=
T Consensus        87 -s~~~~~vl-~~i~~~l~~~~~vIsl~kGi  114 (341)
T PRK12439         87 -SHGFRGVL-TELAKELRPWVPVVSLVKGL  114 (341)
T ss_pred             -HHHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence             33455554 33344578888889888764

>PRK06046 alanine dehydrogenase; Validated

Probab=97.48  E-value=0.00036  Score=66.88  Aligned_cols=81  Identities=22%  Similarity=0.299  Sum_probs=62.0

Q ss_pred             CceEEEEecChHHHHHHHHHhh-CCC-EEEEECCCCCC-------C----C--ccccCCHHhhhcCCCEEEEeccCChhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQA-FGC-NVLYNSRSKKP-------V----P--YAFYSNVCELAANSDALIICCALTDQT  225 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~-------~----~--~~~~~~l~ell~~aDiV~l~~P~t~~t  225 (331)
                      -+++||||+|.+|+..++.+.. .+. +|.+++|+...       .    +  .....+++++++ +|+|++|+|.+   
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~---  204 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR---  204 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence            3689999999999999998874 455 57789998654       1    1  123567899887 99999998864   


Q ss_pred             hhhccHHHHhcCCCCcEEEEcCC
Q 020073          226 RRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       226 ~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      ..++..+.   +|+|+.+..+|.
T Consensus       205 ~P~~~~~~---l~~g~hV~~iGs  224 (326)
T PRK06046        205 KPVVKAEW---IKEGTHINAIGA  224 (326)
T ss_pred             CcEecHHH---cCCCCEEEecCC
Confidence            46787765   589999888873

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.48  E-value=0.00074  Score=71.31  Aligned_cols=110  Identities=15%  Similarity=0.185  Sum_probs=80.4

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------------CC-------------ccccCCHHhhhcC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------------VP-------------YAFYSNVCELAAN  211 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------------~~-------------~~~~~~l~ell~~  211 (331)
                      ++|+|||.|.||..+|..+...|++|+.+|++.+.                 .+             .....++ +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER  392 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            68999999999999999999999999999987642                 00             0112345 45799


Q ss_pred             CCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCC
Q 020073          212 SDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE  275 (331)
Q Consensus       212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~  275 (331)
                      ||+|+=++|-+.+.+.-+-++.=+.++++++|-..+++  +.-..|.+++.. .-+.+++--|.
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~~g~Hff~  453 (715)
T PRK11730        393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKR-PENFCGMHFFN  453 (715)
T ss_pred             CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-CccEEEEecCC
Confidence            99999999999888887767766778999887654433  455666676643 33345665554

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.47  E-value=0.00051  Score=65.55  Aligned_cols=86  Identities=21%  Similarity=0.310  Sum_probs=60.8

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------------C-C------ccccCCHHhhh-cCCCEEEEeccC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------------V-P------YAFYSNVCELA-ANSDALIICCAL  221 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~-~------~~~~~~l~ell-~~aDiV~l~~P~  221 (331)
                      +|+|||.|.||..+|..|...|.+|.+|+|+.+.             . +      .....++.+.+ ..+|+|++++|.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks   81 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT   81 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence            6999999999999999999999999999986421             0 0      11224566766 589999999984


Q ss_pred             ChhhhhhccHHHHh-cCCCCcEEEEcCCCC
Q 020073          222 TDQTRRMINREVML-ALGKEGIIVNVGRGA  250 (331)
Q Consensus       222 t~~t~~li~~~~l~-~mk~ga~lIn~srg~  250 (331)
                      . .+...+. +... .+++...+|...-|-
T Consensus        82 ~-~~~~~l~-~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         82 Q-QLRTICQ-QLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             H-HHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence            3 4555442 2333 566777677666664

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.47  E-value=0.00039  Score=65.33  Aligned_cols=64  Identities=22%  Similarity=0.241  Sum_probs=50.4

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-------C----C-c--cccCCHHhhhcCCCEEEEeccCC
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-------V----P-Y--AFYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------~----~-~--~~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      +.++++.|||.|.+|++++..|...|+ +|++++|+..+       .    . .  ....++.+.++++|+|+.++|..
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G  203 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG  203 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence            567899999999999999999999998 79999998654       0    0 0  11234556778899999998864

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.46  E-value=0.0003  Score=67.46  Aligned_cols=81  Identities=15%  Similarity=0.154  Sum_probs=60.9

Q ss_pred             CCceEEEEecChHHHHHHHHHhh-CCC-EEEEECCCCCC-------C----Cc--cccCCHHhhhcCCCEEEEeccCChh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQA-FGC-NVLYNSRSKKP-------V----PY--AFYSNVCELAANSDALIICCALTDQ  224 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~-------~----~~--~~~~~l~ell~~aDiV~l~~P~t~~  224 (331)
                      ..++++|||.|.+|+..+..+.. .+. +|.+|+|+.++       .    +.  ....++++++.+||+|++++|..  
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~--  208 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE--  208 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence            35789999999999999988874 554 78999998654       0    11  22468899999999999998754  


Q ss_pred             hhhhccHHHHhcCCCCcEEEEc
Q 020073          225 TRRMINREVMLALGKEGIIVNV  246 (331)
Q Consensus       225 t~~li~~~~l~~mk~ga~lIn~  246 (331)
                       ..++..+.   +++|+.+..+
T Consensus       209 -~p~i~~~~---l~~g~~v~~v  226 (330)
T PRK08291        209 -EPILKAEW---LHPGLHVTAM  226 (330)
T ss_pred             -CcEecHHH---cCCCceEEee
Confidence             45776655   5788766654

>PRK06444 prephenate dehydrogenase; Provisional

Probab=97.44  E-value=0.00046  Score=61.43  Aligned_cols=61  Identities=16%  Similarity=0.227  Sum_probs=48.1

Q ss_pred             eEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCc
Q 020073          163 RVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG  241 (331)
Q Consensus       163 ~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga  241 (331)
                      +++|||. |.||+.+++.++..|+.|.                    +++||+|++|+|-. .+..++.     .+.  .
T Consensus         2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------~~~~DlVilavPv~-~~~~~i~-----~~~--~   53 (197)
T PRK06444          2 MEIIIGKNGRLGRVLCSILDDNGLGVY--------------------IKKADHAFLSVPID-AALNYIE-----SYD--N   53 (197)
T ss_pred             EEEEEecCCcHHHHHHHHHHhCCCEEE--------------------ECCCCEEEEeCCHH-HHHHHHH-----HhC--C
Confidence            7999997 9999999999999999885                    36899999999955 3444442     222  3


Q ss_pred             EEEEcCCCCc
Q 020073          242 IIVNVGRGAV  251 (331)
Q Consensus       242 ~lIn~srg~~  251 (331)
                      +++++++-+-
T Consensus        54 ~v~Dv~SvK~   63 (197)
T PRK06444         54 NFVEISSVKW   63 (197)
T ss_pred             eEEeccccCH
Confidence            7899988664

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.44  E-value=0.00047  Score=66.00  Aligned_cols=81  Identities=17%  Similarity=0.189  Sum_probs=66.1

Q ss_pred             ceEEEEecChHHHHHHHHHhh-CCC-EEEEECCCCCC----------C-C--ccccCCHHhhhcCCCEEEEeccCChhhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQA-FGC-NVLYNSRSKKP----------V-P--YAFYSNVCELAANSDALIICCALTDQTR  226 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~----------~-~--~~~~~~l~ell~~aDiV~l~~P~t~~t~  226 (331)
                      ++++|||.|..++.-++.++. ++. +|.+|+|+++.          . +  .....+.+++++.||+|+.|+|.++   
T Consensus       131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~---  207 (330)
T COG2423         131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE---  207 (330)
T ss_pred             cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---
Confidence            589999999999999998875 555 79999998764          1 1  2346789999999999999987664   


Q ss_pred             hhccHHHHhcCCCCcEEEEcCC
Q 020073          227 RMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      .++..+.   +|||+.+..++.
T Consensus       208 Pil~~~~---l~~G~hI~aiGa  226 (330)
T COG2423         208 PVLKAEW---LKPGTHINAIGA  226 (330)
T ss_pred             CeecHhh---cCCCcEEEecCC
Confidence            7887776   579999999984

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.40  E-value=0.0005  Score=67.03  Aligned_cols=83  Identities=19%  Similarity=0.201  Sum_probs=60.8

Q ss_pred             ceEEEEecChHHHHHHHHHhhCC-CEEEEECCCCCC------C----------CccccCCHHhhhcCCCEEEEeccCChh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFG-CNVLYNSRSKKP------V----------PYAFYSNVCELAANSDALIICCALTDQ  224 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~------~----------~~~~~~~l~ell~~aDiV~l~~P~t~~  224 (331)
                      +++.|||+|.||+.+|+.|...| .+|++.+|+..+      .          +......+.+++++.|+|+.++|..-.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~   81 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD   81 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence            67999999999999999999888 899999998654      0          111124678889999999999885522


Q ss_pred             hhhhccHHHH-hcCCCCcEEEEcCCCC
Q 020073          225 TRRMINREVM-LALGKEGIIVNVGRGA  250 (331)
Q Consensus       225 t~~li~~~~l-~~mk~ga~lIn~srg~  250 (331)
                            ...+ +.++.|.-.+++|-..
T Consensus        82 ------~~i~ka~i~~gv~yvDts~~~  102 (389)
T COG1748          82 ------LTILKACIKTGVDYVDTSYYE  102 (389)
T ss_pred             ------HHHHHHHHHhCCCEEEcccCC
Confidence                  2223 2346677777777544

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.39  E-value=0.00061  Score=68.62  Aligned_cols=68  Identities=24%  Similarity=0.262  Sum_probs=50.8

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-C----Cc-cccCCHHhh--hcCCCEEEEeccCCh
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-V----PY-AFYSNVCEL--AANSDALIICCALTD  223 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~----~~-~~~~~l~el--l~~aDiV~l~~P~t~  223 (331)
                      +.++.+++++|+|.|.+|++++..+...|++|.+++|+..+ .    .. ....+++++  +.++|+|++|+|...
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~  402 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSV  402 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCC
Confidence            44678999999999999999999999999999999987543 0    00 011122222  578999999998763

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.38  E-value=0.00012  Score=58.20  Aligned_cols=84  Identities=25%  Similarity=0.285  Sum_probs=55.8

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC--C--CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHH
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK--P--VPYAFYSNVCELAANSDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~--~--~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      +++|+++.|||.|.+|..-++.|...|++|+++++...  +  ... ....+++.+..+|+|+.+++. ++    +++..
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~-~~~~~~~~l~~~~lV~~at~d-~~----~n~~i   77 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQL-IRREFEEDLDGADLVFAATDD-PE----LNEAI   77 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEE-EESS-GGGCTTESEEEE-SS--HH----HHHHH
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHH-HhhhHHHHHhhheEEEecCCC-HH----HHHHH
Confidence            58899999999999999999999999999999988731  1  111 123445678889999987653 33    23333


Q ss_pred             HhcCCCCcEEEEcC
Q 020073          234 MLALGKEGIIVNVG  247 (331)
Q Consensus       234 l~~mk~ga~lIn~s  247 (331)
                      ....+.-.+++|++
T Consensus        78 ~~~a~~~~i~vn~~   91 (103)
T PF13241_consen   78 YADARARGILVNVV   91 (103)
T ss_dssp             HHHHHHTTSEEEET
T ss_pred             HHHHhhCCEEEEEC
Confidence            44445455777775

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.38  E-value=0.00051  Score=67.19  Aligned_cols=85  Identities=19%  Similarity=0.284  Sum_probs=65.3

Q ss_pred             CceEEEEecChHHHHHHHHHhh-CC-C-EEEEECCCCCC-----------C-C---ccccCCHHhhhcCCCEEEEeccCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQA-FG-C-NVLYNSRSKKP-----------V-P---YAFYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~-~G-~-~V~~~~~~~~~-----------~-~---~~~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      -++++|||.|..++..++.+.. +. . +|.+|+|++.+           . +   .....+.++++++||+|+.|++.+
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~  234 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE  234 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence            4689999999999999998875 42 4 79999998754           1 1   223478999999999999998754


Q ss_pred             h---hhhhhccHHHHhcCCCCcEEEEcCC
Q 020073          223 D---QTRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       223 ~---~t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      .   .+..++..+.   +|+|+.++.++.
T Consensus       235 ~~~~s~~Pv~~~~~---lkpG~hv~~ig~  260 (379)
T PRK06199        235 TGDPSTYPYVKREW---VKPGAFLLMPAA  260 (379)
T ss_pred             CCCCCcCcEecHHH---cCCCcEEecCCc
Confidence            3   3457887765   589998877665

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.36  E-value=0.00059  Score=64.70  Aligned_cols=82  Identities=16%  Similarity=0.140  Sum_probs=62.9

Q ss_pred             CceEEEEecChHHHHHHHHHhh-CCC-EEEEECCCCCC-----------CC--ccccCCHHhhhcCCCEEEEeccCChhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQA-FGC-NVLYNSRSKKP-----------VP--YAFYSNVCELAANSDALIICCALTDQT  225 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~-----------~~--~~~~~~l~ell~~aDiV~l~~P~t~~t  225 (331)
                      -+++||||.|..|+..++.+.. +.. +|.+|+|++.+           .+  .....++++++++||+|+.++|.   +
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s---~  193 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNS---D  193 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC---C
Confidence            4789999999999998888765 444 79999998764           01  22346899999999999998764   4


Q ss_pred             hhhccHHHHhcCCCCcEEEEcCC
Q 020073          226 RRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       226 ~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      ..+++.+.   +|||+.+.-++.
T Consensus       194 ~P~~~~~~---l~pg~hV~aiGs  213 (301)
T PRK06407        194 TPIFNRKY---LGDEYHVNLAGS  213 (301)
T ss_pred             CcEecHHH---cCCCceEEecCC
Confidence            57887765   578987776654

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.32  E-value=0.00043  Score=61.96  Aligned_cols=89  Identities=22%  Similarity=0.307  Sum_probs=57.4

Q ss_pred             CCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CC-cccc-CC-HHhhhcCCCEEEEeccCCh
Q 020073          154 PLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VP-YAFY-SN-VCELAANSDALIICCALTD  223 (331)
Q Consensus       154 ~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~-~~~~-~~-l~ell~~aDiV~l~~P~t~  223 (331)
                      |..-++.|+++.|||.|.+|..-++.|..+|++|+++++...+       .+ .... .+ -.+.+..+|+|+.+.. ++
T Consensus         2 P~~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~-d~   80 (205)
T TIGR01470         2 PVFANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATD-DE   80 (205)
T ss_pred             CeEEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCC-CH
Confidence            3445789999999999999999999999999999999886543       01 1110 01 1345677887776643 33


Q ss_pred             hhhhhccHHHHhcCCCCcEEEEcC
Q 020073          224 QTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       224 ~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      +    +|.......+.-.++||+.
T Consensus        81 ~----ln~~i~~~a~~~~ilvn~~  100 (205)
T TIGR01470        81 E----LNRRVAHAARARGVPVNVV  100 (205)
T ss_pred             H----HHHHHHHHHHHcCCEEEEC
Confidence            2    2233333344445666653

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.30  E-value=0.00072  Score=64.47  Aligned_cols=101  Identities=20%  Similarity=0.271  Sum_probs=65.8

Q ss_pred             ceEEEEecChHHHHHHHHHhhC-CCEEEE-ECCCC-CC----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF-GCNVLY-NSRSK-KP----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~~-~~~~~-~~----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      .+|||||+|+||+.+++.+... ++++++ ++++. ..    .+.....+.++++.+.|+|++|+|....-     ....
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th~-----~~~~   78 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATDI-----PEQA   78 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccCH-----HHHH
Confidence            5899999999999999999765 788875 67774 22    22223356778889999999999865331     2333


Q ss_pred             hcCCCCcEEEEcCCC--CccCHHHHHHHHHh--CCce
Q 020073          235 LALGKEGIIVNVGRG--AVIDENEMVRCLVR--GEIA  267 (331)
Q Consensus       235 ~~mk~ga~lIn~srg--~~vd~~al~~aL~~--~~i~  267 (331)
                      ..++.|.-+|+..--  .+-+..+.+++...  |+..
T Consensus        79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs  115 (324)
T TIGR01921        79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS  115 (324)
T ss_pred             HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence            446777777777432  12233444444443  5554

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PLN02477 glutamate dehydrogenase

Probab=97.30  E-value=0.0045  Score=61.08  Aligned_cols=104  Identities=18%  Similarity=0.250  Sum_probs=72.7

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCCEEEE-ECCCCC---C--C-------------Ccc-----ccCCHHhh-hc
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY-NSRSKK---P--V-------------PYA-----FYSNVCEL-AA  210 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~-~~~~~~---~--~-------------~~~-----~~~~l~el-l~  210 (331)
                      |.++.|++|.|.|+|++|+.+|+.|...|++|++ .|.+..   +  .             ...     ...+.+++ ..
T Consensus       201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~  280 (410)
T PLN02477        201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE  280 (410)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence            4468999999999999999999999999999984 444311   0  0             000     00122332 34


Q ss_pred             CCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       211 ~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      .||+++-|.     ..+.|+++...+++ -.+++-.+-+.+ ..+ ..+.|+++.|.
T Consensus       281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI~  329 (410)
T PLN02477        281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGVV  329 (410)
T ss_pred             cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCcE
Confidence            789888763     56678888888885 457888888988 433 45778888775

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.30  E-value=0.0015  Score=62.48  Aligned_cols=113  Identities=19%  Similarity=0.199  Sum_probs=69.7

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCC-CEEEEECCCCCC--------------CC--cc--ccCCHHhhhcCCCEEEEec
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFG-CNVLYNSRSKKP--------------VP--YA--FYSNVCELAANSDALIICC  219 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~--------------~~--~~--~~~~l~ell~~aDiV~l~~  219 (331)
                      +..++|+|||.|.+|..+|..+...| .+|..+|.+.+.              .+  ..  ...+.+ .+++||+|+++.
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita   81 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA   81 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence            35679999999999999999988777 689999986642              00  01  123555 789999999998


Q ss_pred             --cCChh-hh--------hhc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH--hCCceEEE--ee
Q 020073          220 --ALTDQ-TR--------RMI--NREVMLALGKEGIIVNVGRGAVIDENEMVRCLV--RGEIAGAG--LD  272 (331)
Q Consensus       220 --P~t~~-t~--------~li--~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~--~~~i~ga~--lD  272 (331)
                        |..+. ++        .++  -.+.+....|.+++|+++-..=+-...+.+...  ..++.|.+  ||
T Consensus        82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld  151 (319)
T PTZ00117         82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD  151 (319)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence              44330 10        111  022333446788899986433222333333321  34566555  55

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.30  E-value=0.0027  Score=57.38  Aligned_cols=103  Identities=24%  Similarity=0.268  Sum_probs=70.1

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCCEEEE-ECCCC----------CC-------CCcccc-----CCHHhhh-cCC
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY-NSRSK----------KP-------VPYAFY-----SNVCELA-ANS  212 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~-~~~~~----------~~-------~~~~~~-----~~l~ell-~~a  212 (331)
                      .++.|+++.|.|+|++|+.+|+.|...|.+|++ .|.+.          +.       .....+     .+-++++ .+|
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   98 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV   98 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence            368899999999999999999999999997665 45443          11       000000     0113332 368


Q ss_pred             CEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          213 DALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       213 DiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      |+++-|.+.     +.|+.+....++ -.+++-.+-+.+-+  .-.+.|.+..+.
T Consensus        99 DVlipaA~~-----~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~  145 (217)
T cd05211          99 DIFAPCALG-----NVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV  145 (217)
T ss_pred             cEEeecccc-----CccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence            999988653     378888877787 45777788888765  446667766654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.29  E-value=0.00068  Score=60.54  Aligned_cols=69  Identities=22%  Similarity=0.194  Sum_probs=50.0

Q ss_pred             CCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CC-ccc-cCCH-HhhhcCCCEEEEeccCC
Q 020073          154 PLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VP-YAF-YSNV-CELAANSDALIICCALT  222 (331)
Q Consensus       154 ~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~-~~~-~~~l-~ell~~aDiV~l~~P~t  222 (331)
                      |..-++.|+++.|||.|.+|...++.|...|++|+++++...+       .+ ... ...+ .+.+..+|+|+.++...
T Consensus         3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~   81 (202)
T PRK06718          3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDP   81 (202)
T ss_pred             ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCH
Confidence            4455799999999999999999999999999999999876432       01 111 1112 33577888888876543

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.27  E-value=0.0063  Score=56.20  Aligned_cols=104  Identities=23%  Similarity=0.233  Sum_probs=73.1

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C---------------Cc-----------cccCC
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V---------------PY-----------AFYSN  204 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~---------------~~-----------~~~~~  204 (331)
                      .++.|+|+.|-|+|++|+.+|+.|..+|++|++++.+...      .               ..           ....+
T Consensus        34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~  113 (254)
T cd05313          34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFE  113 (254)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeC
Confidence            4689999999999999999999999999999844321100      0               00           00112


Q ss_pred             HHhh-hcCCCEEEEeccCChhhhhhccHHHHhcCC--CCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          205 VCEL-AANSDALIICCALTDQTRRMINREVMLALG--KEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       205 l~el-l~~aDiV~l~~P~t~~t~~li~~~~l~~mk--~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      .+++ ...|||++-|     .+.+.|+.+..++++  .-.+++-.+-|.+-+  +-.+.|.++.|.
T Consensus       114 ~~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~  172 (254)
T cd05313         114 GKKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL  172 (254)
T ss_pred             CcchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence            3333 3468988877     367789998888885  345788888888755  455778877775

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=97.27  E-value=0.0019  Score=68.06  Aligned_cols=110  Identities=15%  Similarity=0.132  Sum_probs=78.7

Q ss_pred             ceEEEEecChHHHHHHHHHh-hCCCEEEEECCCCCC-----------------CC-------------ccccCCHHhhhc
Q 020073          162 KRVGIVGLGNIGLQVAKRLQ-AFGCNVLYNSRSKKP-----------------VP-------------YAFYSNVCELAA  210 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~-~~G~~V~~~~~~~~~-----------------~~-------------~~~~~~l~ell~  210 (331)
                      ++|+|||.|.||..+|..+. ..|++|+.+|.+++.                 .+             .....++ +.++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence            58999999999999999987 479999999987642                 00             0112344 4679


Q ss_pred             CCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCC
Q 020073          211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE  275 (331)
Q Consensus       211 ~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~  275 (331)
                      +||+|+=++|.+.+.+.-+-++.=+.++++++|....++  +.-..+.+++.. .-+.+++--|.
T Consensus       384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~Hffn  445 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYFS  445 (699)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecCC
Confidence            999999999999888877767666778898877644433  455566666643 23345666554

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=97.24  E-value=0.0015  Score=69.29  Aligned_cols=110  Identities=15%  Similarity=0.142  Sum_probs=81.0

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------------CC-------------ccccCCHHhhhcC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------------VP-------------YAFYSNVCELAAN  211 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------------~~-------------~~~~~~l~ell~~  211 (331)
                      ++|+|||.|.||..+|..+...|++|+.+|++++.                 .+             .....++ +.+++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  414 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-SGFKN  414 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhcc
Confidence            58999999999999999999889999999987643                 00             0112345 36799


Q ss_pred             CCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCC
Q 020073          212 SDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE  275 (331)
Q Consensus       212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~  275 (331)
                      ||+|+=++|-+-+.+.-+-++.=+.++++++|-...  +-++-..|.+.+.. .=+..++--|.
T Consensus       415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNT--Ssl~i~~la~~~~~-p~r~ig~Hff~  475 (737)
T TIGR02441       415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNT--SALPIKDIAAVSSR-PEKVIGMHYFS  475 (737)
T ss_pred             CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcC--CCCCHHHHHhhcCC-ccceEEEeccC
Confidence            999999999998888777677767789998876433  33566677777654 33346776664

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.23  E-value=0.002  Score=68.05  Aligned_cols=110  Identities=15%  Similarity=0.121  Sum_probs=80.1

Q ss_pred             ceEEEEecChHHHHHHHHHh-hCCCEEEEECCCCCC-----------------CC-------------ccccCCHHhhhc
Q 020073          162 KRVGIVGLGNIGLQVAKRLQ-AFGCNVLYNSRSKKP-----------------VP-------------YAFYSNVCELAA  210 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~-~~G~~V~~~~~~~~~-----------------~~-------------~~~~~~l~ell~  210 (331)
                      ++|+|||.|.||..+|..+. ..|++|+.+|.+.+.                 .+             .....++ +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            68999999999999999988 779999999987542                 00             0112344 5679


Q ss_pred             CCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCC
Q 020073          211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE  275 (331)
Q Consensus       211 ~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~  275 (331)
                      +||+|+=++|-+.+.+.-+-++.=+.++|+++|...+++  +.-..|.+.+.. .-+.+++--|.
T Consensus       389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~Hff~  450 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAAR-PEQVIGLHYFS  450 (708)
T ss_pred             cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCc-ccceEEEecCC
Confidence            999999999999888877766666778999988755443  555666676643 22345666654

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=97.23  E-value=0.0029  Score=59.94  Aligned_cols=129  Identities=17%  Similarity=0.233  Sum_probs=86.0

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------------CCc-------------cccCCHHhhhc
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------------VPY-------------AFYSNVCELAA  210 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------------~~~-------------~~~~~l~ell~  210 (331)
                      -++++|||.|.||+.+|..+..-|.+|+.+|++++.                 .+.             ....++. .++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~   81 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK   81 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence            378999999999999999998867999999988432                 000             0012222 789


Q ss_pred             CCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCce
Q 020073          211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNV  290 (331)
Q Consensus       211 ~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nv  290 (331)
                      +||+|+=++|-+-+.++-+-++.=...+|+++|=.-.++  +.-.++.+++ ++.=+..++=-|.+-|     +..+=-|
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs--l~it~ia~~~-~rper~iG~HFfNP~~-----~m~LVEv  153 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS--LSITELAEAL-KRPERFIGLHFFNPVP-----LMPLVEV  153 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC--CCHHHHHHHh-CCchhEEEEeccCCCC-----cceeEEE
Confidence            999999999999888877656666667888876533322  4556677777 3344456665554333     3333345


Q ss_pred             EEcCCCCC
Q 020073          291 VLQPHRAV  298 (331)
Q Consensus       291 ilTPH~a~  298 (331)
                      +-+.+++-
T Consensus       154 I~g~~T~~  161 (307)
T COG1250         154 IRGEKTSD  161 (307)
T ss_pred             ecCCCCCH
Confidence            55554443

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.22  E-value=0.0012  Score=53.62  Aligned_cols=84  Identities=14%  Similarity=0.194  Sum_probs=53.3

Q ss_pred             eEEEEe-cChHHHHHHHHHhhC-CCEEEEE-CCCCC--C----C-C-c--cccCCHH-hhh--cCCCEEEEeccCChhhh
Q 020073          163 RVGIVG-LGNIGLQVAKRLQAF-GCNVLYN-SRSKK--P----V-P-Y--AFYSNVC-ELA--ANSDALIICCALTDQTR  226 (331)
Q Consensus       163 ~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~-~~~~~--~----~-~-~--~~~~~l~-ell--~~aDiV~l~~P~t~~t~  226 (331)
                      +++|+| .|.+|+.+++.+... ++++..+ ++...  +    . + .  ......+ +.+  .++|+|++|+|.... .
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~-~   79 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVS-K   79 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHH-H
Confidence            589999 599999999999874 7877655 43321  1    0 1 1  0001111 222  589999999997643 3


Q ss_pred             hhccHHHHhcCCCCcEEEEcCC
Q 020073          227 RMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      ..+. .....+++|.++|++|.
T Consensus        80 ~~~~-~~~~~~~~g~~viD~s~  100 (122)
T smart00859       80 EIAP-LLPKAAEAGVKVIDLSS  100 (122)
T ss_pred             HHHH-HHHhhhcCCCEEEECCc
Confidence            3322 23455799999999983

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=97.21  E-value=0.0023  Score=67.59  Aligned_cols=110  Identities=15%  Similarity=0.182  Sum_probs=78.7

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------------CC-------------ccccCCHHhhhcC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------------VP-------------YAFYSNVCELAAN  211 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------------~~-------------~~~~~~l~ell~~  211 (331)
                      ++|+|||.|.||..+|..+...|++|+.+|++.+.                 .+             .....++ +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN  392 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            57999999999999999999999999999987542                 00             0112344 45799


Q ss_pred             CCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCC
Q 020073          212 SDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE  275 (331)
Q Consensus       212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~  275 (331)
                      ||+|+=++|-+-+.+.-+-++.=+.++++++|-...++  ++-.++.+++.. .=+..++=-|.
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~-p~r~ig~Hff~  453 (714)
T TIGR02437       393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKR-PENFCGMHFFN  453 (714)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC-cccEEEEecCC
Confidence            99999999998887776666666778999887654433  555666666643 22334554443

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.20  E-value=0.0011  Score=64.07  Aligned_cols=83  Identities=13%  Similarity=0.164  Sum_probs=61.7

Q ss_pred             CceEEEEecChHHHHHHHHHh-hCCC-EEEEECCCCCC----------CC--ccccCCHHhhhcCCCEEEEeccCChhhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQ-AFGC-NVLYNSRSKKP----------VP--YAFYSNVCELAANSDALIICCALTDQTR  226 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~-~~G~-~V~~~~~~~~~----------~~--~~~~~~l~ell~~aDiV~l~~P~t~~t~  226 (331)
                      -++++|||.|..++..++.+. -+.. +|.+|+|+++.          .+  .....++++++++||+|+.++|.+ +..
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~  207 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA  207 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence            368999999999998888665 3444 78999998764          01  223468999999999999998643 223


Q ss_pred             hhccHHHHhcCCCCcEEEEcC
Q 020073          227 RMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~s  247 (331)
                      .++..+.   +|||+.+.-++
T Consensus       208 Pvl~~~~---lkpG~hV~aIG  225 (346)
T PRK07589        208 TILTDDM---VEPGMHINAVG  225 (346)
T ss_pred             ceecHHH---cCCCcEEEecC
Confidence            5676655   59999877765

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=97.16  E-value=0.00069  Score=54.54  Aligned_cols=99  Identities=22%  Similarity=0.302  Sum_probs=63.1

Q ss_pred             eEEEEecChHHHHHHHHHhhC--CCEEE-EECCCCCC-------CCccccCCHHhhhc--CCCEEEEeccCChhhhhhcc
Q 020073          163 RVGIVGLGNIGLQVAKRLQAF--GCNVL-YNSRSKKP-------VPYAFYSNVCELAA--NSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~--G~~V~-~~~~~~~~-------~~~~~~~~l~ell~--~aDiV~l~~P~t~~t~~li~  230 (331)
                      ++||||+|.+|+...+.+...  ++++. ++++++..       .+...+.++++++.  +.|+|++++|........  
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~--   79 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIA--   79 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHH--
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHH--
Confidence            799999999999999888765  55665 67777543       24446789999998  799999999865433322  


Q ss_pred             HHHHhcCCCCcEEEEcC-CCCccCHHHHHHHHHhCC
Q 020073          231 REVMLALGKEGIIVNVG-RGAVIDENEMVRCLVRGE  265 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~s-rg~~vd~~al~~aL~~~~  265 (331)
                      ...+++=+  .+++.-= --.+-+.+.|+++.++.+
T Consensus        80 ~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~  113 (120)
T PF01408_consen   80 KKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKG  113 (120)
T ss_dssp             HHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence            22332212  4555421 123334455555555544

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.04  E-value=0.0024  Score=59.08  Aligned_cols=98  Identities=19%  Similarity=0.246  Sum_probs=64.6

Q ss_pred             ceEEEEecChHHHHHHHHHhhC---CCEEE-EECCCCCC-----CCccccCCHHhh-hcCCCEEEEeccCChhhhhhccH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF---GCNVL-YNSRSKKP-----VPYAFYSNVCEL-AANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~---G~~V~-~~~~~~~~-----~~~~~~~~l~el-l~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      .+|||||+|.||+.+++.+..-   ++++. ++++.+..     .......+++++ ....|+|+=|.+-. ..+. ...
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~-av~e-~~~   80 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQ-AIAE-HAE   80 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHH-HHHH-HHH
Confidence            5899999999999999998752   35554 45555422     123346789996 58899999887533 2221 122


Q ss_pred             HHHhcCCCCcEEEEcCCCCccC---HHHHHHHHHhC
Q 020073          232 EVMLALGKEGIIVNVGRGAVID---ENEMVRCLVRG  264 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~srg~~vd---~~al~~aL~~~  264 (331)
                      ..   ++.|.-++=+|=|.+-|   ++.|.++.+++
T Consensus        81 ~i---L~~g~dlvv~SvGALaD~~~~~~l~~~A~~~  113 (267)
T PRK13301         81 GC---LTAGLDMIICSAGALADDALRARLIAAAEAG  113 (267)
T ss_pred             HH---HhcCCCEEEEChhHhcCHHHHHHHHHHHHhC
Confidence            23   56677777778888887   44455555543

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=97.04  E-value=0.0025  Score=59.32  Aligned_cols=100  Identities=20%  Similarity=0.249  Sum_probs=61.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhC-CCEEEE-ECCCCCC------C--CccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF-GCNVLY-NSRSKKP------V--PYAFYSNVCELAANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~~-~~~~~~~------~--~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      .+|||||+|.||+.+++.+... ++++.+ +++....      .  +...+.+++++-.+.|+|+.|.|.... ..+   
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~e~---   77 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-KEH---   77 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-HHH---
Confidence            4799999999999999999865 566543 3332211      1  233456788875569999999875422 221   


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCH---HHHHHHHHhCCc
Q 020073          232 EVMLALGKEGIIVNVGRGAVIDE---NEMVRCLVRGEI  266 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~srg~~vd~---~al~~aL~~~~i  266 (331)
                       ....++.|.-++-.+-|.+.|.   +.|.++.+++..
T Consensus        78 -~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~  114 (265)
T PRK13303         78 -VVPILKAGIDCAVISVGALADEALRERLEQAAEAGGA  114 (265)
T ss_pred             -HHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCC
Confidence             2222455555554555555554   446666655543

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.04  E-value=0.0028  Score=60.20  Aligned_cols=110  Identities=19%  Similarity=0.235  Sum_probs=69.3

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-----C---------C--c--cccCCHHhhhcCCCEEEEeccCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-----V---------P--Y--AFYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-----~---------~--~--~~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      ++|+|||.|.||..+|..+...|. +|+.+|.....     .         .  .  ....+.++ +++||+|+++.+..
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p   80 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP   80 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence            479999999999999999988765 89999985432     0         0  0  11245665 79999999998732


Q ss_pred             h-----------hhhhhcc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHH--HHhCCceEEE--ee
Q 020073          223 D-----------QTRRMIN--REVMLALGKEGIIVNVGRGAVIDENEMVRC--LVRGEIAGAG--LD  272 (331)
Q Consensus       223 ~-----------~t~~li~--~~~l~~mk~ga~lIn~srg~~vd~~al~~a--L~~~~i~ga~--lD  272 (331)
                      .           ....++.  .+.+....+.+++|+++-.-=+-...+.+.  +...++.|.+  ||
T Consensus        81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld  147 (305)
T TIGR01763        81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD  147 (305)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence            1           1112221  122333457889999875443333444444  4455566665  67

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.03  E-value=0.00097  Score=62.61  Aligned_cols=64  Identities=16%  Similarity=0.216  Sum_probs=48.6

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC---C----Cc----ccc---CCHHhhhcCCCEEEEeccCC
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP---V----PY----AFY---SNVCELAANSDALIICCALT  222 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~---~----~~----~~~---~~l~ell~~aDiV~l~~P~t  222 (331)
                      +.|+++.|||.|.+|++++..|...|+ +|++++|+.++   .    ..    ...   .++.+.+.++|+|+.|+|..
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g  201 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD  201 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence            678999999999999999999999998 79999998654   0    00    011   12335567888888888864

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.03  E-value=0.0017  Score=58.46  Aligned_cols=91  Identities=24%  Similarity=0.290  Sum_probs=63.1

Q ss_pred             eEEEEecChHHHHHHHHHhh--CCCE-EEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHH
Q 020073          163 RVGIVGLGNIGLQVAKRLQA--FGCN-VLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMINRE  232 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~--~G~~-V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~  232 (331)
                      +|||||+|.||+.+.+.++.  .+++ +.+||+..++       .......++++++++.|+|+=|... ++.+.+.   
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~-~Av~e~~---   77 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASP-EAVREYV---   77 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCH-HHHHHHh---
Confidence            79999999999999999984  2454 5688888765       1222346899999999999988642 2333222   


Q ss_pred             HHhcCCCCcEEEEcCCCCccCHHHHH
Q 020073          233 VMLALGKEGIIVNVGRGAVIDENEMV  258 (331)
Q Consensus       233 ~l~~mk~ga~lIn~srg~~vd~~al~  258 (331)
                       .+.+|.|-=+|=+|-|.+.|+.-+.
T Consensus        78 -~~~L~~g~d~iV~SVGALad~~l~e  102 (255)
T COG1712          78 -PKILKAGIDVIVMSVGALADEGLRE  102 (255)
T ss_pred             -HHHHhcCCCEEEEechhccChHHHH
Confidence             2335666666667778888765543

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.02  E-value=0.0017  Score=55.61  Aligned_cols=68  Identities=25%  Similarity=0.315  Sum_probs=48.0

Q ss_pred             CCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----CCc-cc-cCCHH-hhhcCCCEEEEecc
Q 020073          153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----VPY-AF-YSNVC-ELAANSDALIICCA  220 (331)
Q Consensus       153 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~~~-~~-~~~l~-ell~~aDiV~l~~P  220 (331)
                      +|+.-+|+|++|.|||.|.+|...++.|...|++|+++++...+    .+. .. ...++ +-+.++|+|+.++.
T Consensus         5 ~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~   79 (157)
T PRK06719          5 YPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATN   79 (157)
T ss_pred             cceEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHHhccCcEEEecccChhcCCCceEEEECCC
Confidence            45566899999999999999999999999999999998754322    110 00 11122 23567777777654

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=96.94  E-value=0.0025  Score=59.09  Aligned_cols=111  Identities=18%  Similarity=0.288  Sum_probs=70.5

Q ss_pred             EEEEec-ChHHHHHHHHHhhCC----CEEEEECCCCCC------------CC---c--cccCCHHhhhcCCCEEEEeccC
Q 020073          164 VGIVGL-GNIGLQVAKRLQAFG----CNVLYNSRSKKP------------VP---Y--AFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       164 vgIiG~-G~IG~~~A~~l~~~G----~~V~~~~~~~~~------------~~---~--~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      |+|||. |.+|..+|..+...|    .+|..+|...+.            ..   .  ....++.+.+++||+|+++.-.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            589999 999999999998777    689999987644            01   0  1124567899999999996521


Q ss_pred             --Ch---------hhhhhcc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHH--HHhCCceEEE-eecC
Q 020073          222 --TD---------QTRRMIN--REVMLALGKEGIIVNVGRGAVIDENEMVRC--LVRGEIAGAG-LDVF  274 (331)
Q Consensus       222 --t~---------~t~~li~--~~~l~~mk~ga~lIn~srg~~vd~~al~~a--L~~~~i~ga~-lDV~  274 (331)
                        .+         .+..++.  .+.+.+..|.+++||++-.-=+-...+.+.  +...++.|.+ +|..
T Consensus        81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~  149 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPI  149 (263)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence              11         1111220  123334458899999963222222334444  4566788888 8764

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.93  E-value=0.0063  Score=49.92  Aligned_cols=96  Identities=21%  Similarity=0.244  Sum_probs=57.8

Q ss_pred             eEEEEec-ChHHHHHHHHHhh-CCCEEE-EECCCCCC--------------CCccccCCHHhhhcCCCEEEEeccCChhh
Q 020073          163 RVGIVGL-GNIGLQVAKRLQA-FGCNVL-YNSRSKKP--------------VPYAFYSNVCELAANSDALIICCALTDQT  225 (331)
Q Consensus       163 ~vgIiG~-G~IG~~~A~~l~~-~G~~V~-~~~~~~~~--------------~~~~~~~~l~ell~~aDiV~l~~P~t~~t  225 (331)
                      +|+|+|+ |+||+.+++.+.. -|+++. ++++...+              .+.....++++++.++|+|+-.. ..+.+
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~~   80 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDAV   80 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHHh
Confidence            7999999 9999999999987 788865 56666521              22334578999999999888775 22233


Q ss_pred             hhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073          226 RRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR  263 (331)
Q Consensus       226 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~  263 (331)
                      ...+ +..   ++.|.-+|-...|---++.+.++.+.+
T Consensus        81 ~~~~-~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~  114 (124)
T PF01113_consen   81 YDNL-EYA---LKHGVPLVIGTTGFSDEQIDELEELAK  114 (124)
T ss_dssp             HHHH-HHH---HHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred             HHHH-HHH---HhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence            3322 222   234555555555654344445555444

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=96.92  E-value=0.0018  Score=62.28  Aligned_cols=57  Identities=30%  Similarity=0.375  Sum_probs=46.4

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC-----Cc---ccc---CCHHhhhcCCCEEEE
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV-----PY---AFY---SNVCELAANSDALII  217 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~---~~~---~~l~ell~~aDiV~l  217 (331)
                      +++|||||-|..|+.++...+.+|.+|++.++.+...     ..   ..+   ..+.++.+.||+|..
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence            4799999999999999999999999999999877651     10   112   258889999999975

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.92  E-value=0.00041  Score=62.33  Aligned_cols=137  Identities=20%  Similarity=0.265  Sum_probs=85.0

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--------------------C--Cc-------------cccC
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--------------------V--PY-------------AFYS  203 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--------------------~--~~-------------~~~~  203 (331)
                      ..-+.|+|||.|.||..+|+.....|.+|+.+|++.+.                    .  +.             ....
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t   88 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST   88 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence            34578999999999999999999999999999987643                    0  00             0124


Q ss_pred             CHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCC
Q 020073          204 NVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIV-NVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPK  282 (331)
Q Consensus       204 ~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lI-n~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~  282 (331)
                      ++.++++++|+|+=++-.+-..+.=+-++.=...|+.+++. |+|+   +...++..+++.... .++|-.|.+-|    
T Consensus        89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~sr-f~GlHFfNPvP----  160 (298)
T KOG2304|consen   89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSR-FAGLHFFNPVP----  160 (298)
T ss_pred             CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhh-hceeeccCCch----
Confidence            56677888888876654332222211122222346666654 5543   455677777776544 57898887666    


Q ss_pred             ccccCCceEEcCCCCCCcHHHH
Q 020073          283 ELLELDNVVLQPHRAVFTSECF  304 (331)
Q Consensus       283 ~L~~~~nvilTPH~a~~t~~~~  304 (331)
                       ..++=-||=|+..+--|..+.
T Consensus       161 -vMKLvEVir~~~TS~eTf~~l  181 (298)
T KOG2304|consen  161 -VMKLVEVIRTDDTSDETFNAL  181 (298)
T ss_pred             -hHHHhhhhcCCCCCHHHHHHH
Confidence             333334555555544444333

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.92  E-value=0.0018  Score=52.77  Aligned_cols=83  Identities=17%  Similarity=0.271  Sum_probs=51.6

Q ss_pred             eEEEEe-cChHHHHHHHHHhh-CCCEEE-EECCCCCC-------CC----cc--cc-CCHHhhhcCCCEEEEeccCChhh
Q 020073          163 RVGIVG-LGNIGLQVAKRLQA-FGCNVL-YNSRSKKP-------VP----YA--FY-SNVCELAANSDALIICCALTDQT  225 (331)
Q Consensus       163 ~vgIiG-~G~IG~~~A~~l~~-~G~~V~-~~~~~~~~-------~~----~~--~~-~~l~ell~~aDiV~l~~P~t~~t  225 (331)
                      +|+||| .|.+|+.+.+.|.. ..+++. +++++...       .+    ..  .. ..-.+.+.++|+|++|+|.... 
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~-   79 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGAS-   79 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHH-
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHH-
Confidence            699999 99999999999986 345544 44444411       11    00  01 1123456999999999985432 


Q ss_pred             hhhccHHHHhcCCCCcEEEEcCCCC
Q 020073          226 RRMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       226 ~~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                      ..+. ...   .++|..+|+.|..-
T Consensus        80 ~~~~-~~~---~~~g~~ViD~s~~~  100 (121)
T PF01118_consen   80 KELA-PKL---LKAGIKVIDLSGDF  100 (121)
T ss_dssp             HHHH-HHH---HHTTSEEEESSSTT
T ss_pred             HHHH-HHH---hhCCcEEEeCCHHH
Confidence            2222 222   57889999987543

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK14031 glutamate dehydrogenase; Provisional

Probab=96.91  E-value=0.0072  Score=60.10  Aligned_cols=105  Identities=17%  Similarity=0.174  Sum_probs=70.4

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCc-------------------------cccCC
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPY-------------------------AFYSN  204 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~-------------------------~~~~~  204 (331)
                      |.+|.|++|.|.|+|++|+..|+.|..+|++|++++.+...      ...                         ....+
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~  302 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE  302 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence            45799999999999999999999999999999985442211      000                         00112


Q ss_pred             HHhhh-cCCCEEEEeccCChhhhhhccHHHHhcCCCC-c-EEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          205 VCELA-ANSDALIICCALTDQTRRMINREVMLALGKE-G-IIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       205 l~ell-~~aDiV~l~~P~t~~t~~li~~~~l~~mk~g-a-~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      .++++ ..|||++-|     .+.+.|+++...+++.. . +++-.+-| .+..++. +.|.++.|.
T Consensus       303 ~d~~~~~~cDIliPa-----Al~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~  361 (444)
T PRK14031        303 GARPWGEKGDIALPS-----ATQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKIL  361 (444)
T ss_pred             CcccccCCCcEEeec-----ccccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcE
Confidence            33332 458888865     36778998888888653 3 56666667 5555554 455555553

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=96.90  E-value=0.0045  Score=61.60  Aligned_cols=119  Identities=21%  Similarity=0.272  Sum_probs=81.4

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----------CCccc--cCCHHhhhcCCCEEEEeccCChhhh
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----------VPYAF--YSNVCELAANSDALIICCALTDQTR  226 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----------~~~~~--~~~l~ell~~aDiV~l~~P~t~~t~  226 (331)
                      ..|++|.|+|+|.-|.++|+.|+..|++|+++|..+.+          .+...  -...++.+..+|+|+.. |.-+-+.
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~~   83 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPTH   83 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCCC
Confidence            45999999999999999999999999999999965544          01111  01122678889999886 4433333


Q ss_pred             hhccH------------HHHhcC--CCCcEEEEcCCCCccCHHHHHHHHHhC--------CceEEEeecCCCCC
Q 020073          227 RMINR------------EVMLAL--GKEGIIVNVGRGAVIDENEMVRCLVRG--------EIAGAGLDVFENEP  278 (331)
Q Consensus       227 ~li~~------------~~l~~m--k~ga~lIn~srg~~vd~~al~~aL~~~--------~i~ga~lDV~~~EP  278 (331)
                      .++.+            +.+-+.  +...+-|.-+-|+.-...-+...|++.        .|+..++|+.++++
T Consensus        84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~  157 (448)
T COG0771          84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAE  157 (448)
T ss_pred             HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccC
Confidence            33322            233332  233677777889988887777777654        47788899988743

>PRK09414 glutamate dehydrogenase; Provisional

Probab=96.90  E-value=0.0072  Score=60.15  Aligned_cols=105  Identities=17%  Similarity=0.241  Sum_probs=71.5

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCCEEEEE-CCCCC---C--C-------------C-cc--------ccCCHHh
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYN-SRSKK---P--V-------------P-YA--------FYSNVCE  207 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~-~~~~~---~--~-------------~-~~--------~~~~l~e  207 (331)
                      +.++.|++|.|.|+|++|+.+|+.|..+|++|+++ |.+..   +  .             + ..        ...+.++
T Consensus       227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~  306 (445)
T PRK09414        227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS  306 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence            44689999999999999999999999999999877 42210   0  0             0 00        0112333


Q ss_pred             hhc-CCCEEEEeccCChhhhhhccHHHHhcCC--CCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          208 LAA-NSDALIICCALTDQTRRMINREVMLALG--KEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       208 ll~-~aDiV~l~~P~t~~t~~li~~~~l~~mk--~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      ++. +|||++-|.     +.+.|+.+...+++  .-.+++-.+-|.+ ..+ -.+.|.++.|.
T Consensus       307 i~~~d~DVliPaA-----l~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI~  362 (445)
T PRK09414        307 PWSVPCDIALPCA-----TQNELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGVL  362 (445)
T ss_pred             ccccCCcEEEecC-----CcCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCcE
Confidence            333 689998775     35577777766663  3457888888888 333 45677777765

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.88  E-value=0.0021  Score=61.62  Aligned_cols=37  Identities=32%  Similarity=0.537  Sum_probs=34.5

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      .|++|+|+|+|..|....+.++++|++|++++++.++
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K  202 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEK  202 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHH
Confidence            4899999999999999999999999999999998764

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.84  E-value=0.012  Score=55.76  Aligned_cols=103  Identities=15%  Similarity=0.176  Sum_probs=72.1

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC---CCccccCCHHhhhcCCCEEEEeccCChhh---hh------
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP---VPYAFYSNVCELAANSDALIICCALTDQT---RR------  227 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---~~~~~~~~l~ell~~aDiV~l~~P~t~~t---~~------  227 (331)
                      .|++++|||--.=-..++++|...|++|.++.-....   .+.....+.+++++++|+|++-+|.+.+.   +.      
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~   80 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK   80 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccC
Confidence            3789999999999999999999999998865432221   34444456788999999999998865322   11      


Q ss_pred             -hccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          228 -MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       228 -li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                       -++.+.+++|++|..++ ++.   .+.. +-+.+.+..+.
T Consensus        81 ~~~~~~~l~~l~~~~~v~-~G~---~~~~-~~~~~~~~gi~  116 (296)
T PRK08306         81 LVLTEELLELTPEHCTIF-SGI---ANPY-LKELAKETNRK  116 (296)
T ss_pred             CcchHHHHHhcCCCCEEE-Eec---CCHH-HHHHHHHCCCe
Confidence             13678999999998444 333   2222 33556677775

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.82  E-value=0.0065  Score=60.84  Aligned_cols=106  Identities=14%  Similarity=0.159  Sum_probs=72.9

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------CCcccc--CCHHhhhcCCCEEEEeccCChhh
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------VPYAFY--SNVCELAANSDALIICCALTDQT  225 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------~~~~~~--~~l~ell~~aDiV~l~~P~t~~t  225 (331)
                      +.+++|+|+|+|..|.++|+.|+..|++|.++|+....           .+....  ....+.+.++|+|+.. |.-+.+
T Consensus        12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~~   90 (458)
T PRK01710         12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRID   90 (458)
T ss_pred             hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCCC
Confidence            66899999999999999999999999999999976532           111111  1223556789998887 654433


Q ss_pred             hhhc-----------cH-HHHhc-CCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073          226 RRMI-----------NR-EVMLA-LGKEGIIVNVGRGAVIDENEMVRCLVRGE  265 (331)
Q Consensus       226 ~~li-----------~~-~~l~~-mk~ga~lIn~srg~~vd~~al~~aL~~~~  265 (331)
                      ...+           ++ +.+.+ .+...+-|--+.|+.-..+-+...|....
T Consensus        91 ~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g  143 (458)
T PRK01710         91 SPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEG  143 (458)
T ss_pred             chHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence            2222           21 12222 23346788888999988888888887644

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.82  E-value=0.0028  Score=59.66  Aligned_cols=37  Identities=14%  Similarity=0.285  Sum_probs=33.6

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCE-EEEECCCC
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSK  194 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~  194 (331)
                      ++.|+++.|+|.|.+|++++..|...|++ |.+++|+.
T Consensus       123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            36789999999999999999999999996 99999975

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.80  E-value=0.0037  Score=55.72  Aligned_cols=79  Identities=24%  Similarity=0.282  Sum_probs=56.0

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------C-----------------Cc--c--
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------V-----------------PY--A--  200 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~-----------------~~--~--  200 (331)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|+..-.              .                 ..  .  
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~   96 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL   96 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            45899999999999999999999999998 78888765210              0                 00  0  


Q ss_pred             --c--cCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhc
Q 020073          201 --F--YSNVCELAANSDALIICCALTDQTRRMINREVMLA  236 (331)
Q Consensus       201 --~--~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~  236 (331)
                        .  ..+++++++++|+|+.|+. +.+++.++++...+.
T Consensus        97 ~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~  135 (202)
T TIGR02356        97 KERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVAL  135 (202)
T ss_pred             hhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence              0  0134567888998888874 456777776655443

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.73  E-value=0.0055  Score=58.64  Aligned_cols=60  Identities=23%  Similarity=0.241  Sum_probs=45.9

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------CC--c--cccCCHHhhhcCCCEEEEec
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------VP--Y--AFYSNVCELAANSDALIICC  219 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~~--~--~~~~~l~ell~~aDiV~l~~  219 (331)
                      +..++|+|||.|.+|..+|..+...|. +|+.+|.+++.              .+  .  ....+. +.+++||+|+++.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta   82 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA   82 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence            455799999999999999999887774 89999987752              00  0  112355 5789999999976

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.72  E-value=0.0085  Score=55.47  Aligned_cols=61  Identities=20%  Similarity=0.315  Sum_probs=45.8

Q ss_pred             ceEEEEec-ChHHHHHHHHHhh-CCCEEEE-ECCCCCC------CCccccCCHHhhhcCCCEEEEeccCC
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQA-FGCNVLY-NSRSKKP------VPYAFYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~-~G~~V~~-~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      .+|+|+|+ |.||+.+++.+.. -++++.+ +++....      .+...+.+++++++.+|+|+.++|..
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~   71 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPE   71 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHH
Confidence            47999998 9999999999875 4688764 6665533      12234578999998999999887533

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=96.64  E-value=0.0044  Score=57.15  Aligned_cols=96  Identities=21%  Similarity=0.158  Sum_probs=68.5

Q ss_pred             CCccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC------------CCccccCCHHhhhcCCCEEEEeccC
Q 020073          155 LGSKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP------------VPYAFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       155 ~~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~------------~~~~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      +|.+|+..+++|+| .|.||..+|+-+.+.+......-|....            .+.....+++..+.+.|+++-... 
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs-  239 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVAS-  239 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEee-
Confidence            57899999999999 5999999999999988866555432211            122234577777666666655432 


Q ss_pred             ChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHH
Q 020073          222 TDQTRRMINREVMLALGKEGIIVNVGRGAVIDEN  255 (331)
Q Consensus       222 t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~  255 (331)
                       ..+-..|+..+   +|||+++|+-++..=+|+.
T Consensus       240 -~~~g~~I~pq~---lkpg~~ivD~g~P~dvd~~  269 (351)
T COG5322         240 -MPKGVEIFPQH---LKPGCLIVDGGYPKDVDTS  269 (351)
T ss_pred             -cCCCceechhh---ccCCeEEEcCCcCcccccc
Confidence             23445677765   6999999999998866654

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.61  E-value=0.0092  Score=56.61  Aligned_cols=86  Identities=20%  Similarity=0.349  Sum_probs=56.9

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC-----C---------Cc--cccCCHHhhhcCCCEEEEeccCCh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP-----V---------PY--AFYSNVCELAANSDALIICCALTD  223 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~-----~---------~~--~~~~~l~ell~~aDiV~l~~P~t~  223 (331)
                      ++|+|||.|.+|+.+|..|...|.  +|..+|++.+.     .         ..  .....-.+.+++||+|+++.....
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~   80 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ   80 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence            479999999999999999998884  79999987654     0         10  011122345799999999985421


Q ss_pred             ---hhh--------hhcc--HHHHhcCCCCcEEEEcC
Q 020073          224 ---QTR--------RMIN--REVMLALGKEGIIVNVG  247 (331)
Q Consensus       224 ---~t~--------~li~--~~~l~~mk~ga~lIn~s  247 (331)
                         .++        .++.  ...+.+..|.+++|+++
T Consensus        81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs  117 (306)
T cd05291          81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS  117 (306)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence               111        1120  12233446788999987

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.60  E-value=0.01  Score=56.18  Aligned_cols=57  Identities=25%  Similarity=0.307  Sum_probs=43.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-----C----C-------cc--ccCCHHhhhcCCCEEEEec
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-----V----P-------YA--FYSNVCELAANSDALIICC  219 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-----~----~-------~~--~~~~l~ell~~aDiV~l~~  219 (331)
                      ++|+|||.|.+|..+|..+...|. +|+.+|+..+.     .    .       ..  ...+. +.+++||+|+++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~   78 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITA   78 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECC
Confidence            689999999999999999987664 99999986543     0    0       00  11344 5689999999986

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=96.59  E-value=0.0088  Score=58.43  Aligned_cols=103  Identities=30%  Similarity=0.433  Sum_probs=72.8

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC------------------C-------CCccccCCHHhhh-
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK------------------P-------VPYAFYSNVCELA-  209 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~------------------~-------~~~~~~~~l~ell-  209 (331)
                      +.++.|+||.|=|+|++|+.+|+.+...|.+|++++.+..                  +       .+.... +-++++ 
T Consensus       202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i-~~~e~~~  280 (411)
T COG0334         202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYI-TNEELLE  280 (411)
T ss_pred             CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEc-ccccccc
Confidence            4458999999999999999999999999999998876654                  1       011111 225544 


Q ss_pred             cCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 020073          210 ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       210 ~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i  266 (331)
                      ..|||++=|     ++.+.|+.+...+++.. +++-.+-|.+-.+ |--..++.|-+
T Consensus       281 ~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t~e-A~~i~~erGIl  330 (411)
T COG0334         281 VDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTTPE-ADEILLERGIL  330 (411)
T ss_pred             ccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCCHH-HHHHHHHCCCE
Confidence            358887755     47788988888888876 7788888887633 33333355433

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.59  E-value=0.0061  Score=57.20  Aligned_cols=104  Identities=20%  Similarity=0.225  Sum_probs=67.4

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-------CC----ccccCCHHhh--hcCCCEEEEeccCC
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-------VP----YAFYSNVCEL--AANSDALIICCALT  222 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------~~----~~~~~~l~el--l~~aDiV~l~~P~t  222 (331)
                      .+..|+++.|+|.|..+++++..|+..|+ +|++++|+.++       .+    ......+.++  ..++|+||.++|..
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G  201 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG  201 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence            35679999999999999999999999996 79999998765       01    0011122222  22699999999975


Q ss_pred             hhhh---hhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073          223 DQTR---RMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG  264 (331)
Q Consensus       223 ~~t~---~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~  264 (331)
                      -.-.   .+++   .+.++++.++.++--... +..-|..|=+.|
T Consensus       202 m~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G  242 (283)
T COG0169         202 MAGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQG  242 (283)
T ss_pred             CCCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcC
Confidence            4322   1343   344677777777755543 333333333334

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.58  E-value=0.0034  Score=59.31  Aligned_cols=36  Identities=44%  Similarity=0.593  Sum_probs=33.8

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .|+.+||+|+|.+|.--.+.+++||++|++.+++.+
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~  216 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSK  216 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCch
Confidence            799999999999999999999999999999998763

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.58  E-value=0.0076  Score=58.09  Aligned_cols=37  Identities=32%  Similarity=0.414  Sum_probs=33.3

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS  193 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  193 (331)
                      ..|++++|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus        20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D   57 (338)
T PRK12475         20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD   57 (338)
T ss_pred             HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            35899999999999999999999999998 78878765

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.55  E-value=0.0047  Score=60.45  Aligned_cols=94  Identities=19%  Similarity=0.254  Sum_probs=62.6

Q ss_pred             CCceEEEEe-cChHHHHHHHHHhhC-CCEEEEECCCCCC---CC--c--------cccCCHHh-hhcCCCEEEEeccCCh
Q 020073          160 GGKRVGIVG-LGNIGLQVAKRLQAF-GCNVLYNSRSKKP---VP--Y--------AFYSNVCE-LAANSDALIICCALTD  223 (331)
Q Consensus       160 ~g~~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~~~~~~~---~~--~--------~~~~~l~e-ll~~aDiV~l~~P~t~  223 (331)
                      ..++|+|+| .|.+|+++.+.|... +++|..+.+....   ..  .        ....+++. .++++|+|++++|.. 
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~-  115 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG-  115 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH-
Confidence            456899999 599999999999876 6788776543221   00  0        01222332 258899999999854 


Q ss_pred             hhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHH
Q 020073          224 QTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVR  259 (331)
Q Consensus       224 ~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~  259 (331)
                      ....+     ...|+.|..+|+.|..-..+.++.++
T Consensus       116 ~s~~i-----~~~~~~g~~VIDlSs~fRl~~~~~y~  146 (381)
T PLN02968        116 TTQEI-----IKALPKDLKIVDLSADFRLRDIAEYE  146 (381)
T ss_pred             HHHHH-----HHHHhCCCEEEEcCchhccCCcccch
Confidence            33333     34456789999999777666654444

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=96.54  E-value=0.011  Score=50.65  Aligned_cols=88  Identities=15%  Similarity=0.197  Sum_probs=65.4

Q ss_pred             CCceEEEEe--cChHHHHHHHHHhhCCCEEEEECCCCC--CC---------------C--ccccCCHHhhhcCCCEEEEe
Q 020073          160 GGKRVGIVG--LGNIGLQVAKRLQAFGCNVLYNSRSKK--PV---------------P--YAFYSNVCELAANSDALIIC  218 (331)
Q Consensus       160 ~g~~vgIiG--~G~IG~~~A~~l~~~G~~V~~~~~~~~--~~---------------~--~~~~~~l~ell~~aDiV~l~  218 (331)
                      .|++|++||  .+++.++++..+..||+++.+..+..-  +.               +  .....+++++++++|+|..-
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~   80 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD   80 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence            489999999  389999999999999999988877651  11               1  12347899999999998876


Q ss_pred             ccCC---hh--------hhhhccHHHHhcCCCCcEEEEcC
Q 020073          219 CALT---DQ--------TRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       219 ~P~t---~~--------t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      .-.+   .+        ....++++.++.+|++++|.-+.
T Consensus        81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L  120 (158)
T PF00185_consen   81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL  120 (158)
T ss_dssp             SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred             CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence            5431   11        11456899999999999998874

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.49  E-value=0.0036  Score=56.85  Aligned_cols=62  Identities=23%  Similarity=0.333  Sum_probs=48.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----CC----c-------cccCCHHhh-hcCCCEEEEeccCCh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----VP----Y-------AFYSNVCEL-AANSDALIICCALTD  223 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~~----~-------~~~~~l~el-l~~aDiV~l~~P~t~  223 (331)
                      +++.|+|+|.+|..+|+.|...|++|+..++.+..    ..    .       .....|.++ +.++|+++.++..+.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~   78 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE   78 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH
Confidence            47899999999999999999999999999887654    01    1       011246666 889999999987654

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.49  E-value=0.015  Score=53.48  Aligned_cols=92  Identities=17%  Similarity=0.274  Sum_probs=60.9

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCc
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG  241 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga  241 (331)
                      .++-|+|.|.+++++|+.++.+|++|+++|..+....       ......++.+....|          .+.+..+.+.+
T Consensus       101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~-------~~~~~~~~~~~~~~~----------~~~~~~~~~~t  163 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFP-------EDLPDGVATLVTDEP----------EAEVAEAPPGS  163 (246)
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCccccc-------ccCCCCceEEecCCH----------HHHHhcCCCCc
Confidence            4799999999999999999999999999986543110       011123443332211          12222345677


Q ss_pred             EEEEcCCCCccCHHHHHHHHHhCCceEEE
Q 020073          242 IIVNVGRGAVIDENEMVRCLVRGEIAGAG  270 (331)
Q Consensus       242 ~lIn~srg~~vd~~al~~aL~~~~i~ga~  270 (331)
                      .+|=+.++.-.|.++|..+|.+....+.+
T Consensus       164 ~vvi~th~h~~D~~~L~~aL~~~~~~YIG  192 (246)
T TIGR02964       164 YFLVLTHDHALDLELCHAALRRGDFAYFG  192 (246)
T ss_pred             EEEEEeCChHHHHHHHHHHHhCCCCcEEE
Confidence            77777799999999999999544443333

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.48  E-value=0.0075  Score=55.47  Aligned_cols=103  Identities=28%  Similarity=0.376  Sum_probs=70.6

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEE--------CCCCCC-----------CC-ccccC----------CHH-
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYN--------SRSKKP-----------VP-YAFYS----------NVC-  206 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~--------~~~~~~-----------~~-~~~~~----------~l~-  206 (331)
                      ++.|+++.|-|+|.+|+.+|+.|...|++|++.        ++..-+           .. ...+.          +-+ 
T Consensus        29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  108 (244)
T PF00208_consen   29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD  108 (244)
T ss_dssp             SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence            589999999999999999999999999998765        221111           01 01011          121 


Q ss_pred             hhh-cCCCEEEEeccCChhhhhhccHHHHh-cCCCCc-EEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          207 ELA-ANSDALIICCALTDQTRRMINREVML-ALGKEG-IIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       207 ell-~~aDiV~l~~P~t~~t~~li~~~~l~-~mk~ga-~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      +++ ..||+++-|.     ..+.|+.+... .+++|+ +++-.+-+.+-++.. . .|.++.|.
T Consensus       109 ~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~-~-~L~~rGI~  165 (244)
T PF00208_consen  109 EILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLTPEAD-E-ILRERGIL  165 (244)
T ss_dssp             HGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHH-H-HHHHTT-E
T ss_pred             ccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhccHHHH-H-HHHHCCCE
Confidence            454 5799999883     45678888888 777665 677777788764444 3 88888875

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK14030 glutamate dehydrogenase; Provisional

Probab=96.46  E-value=0.019  Score=57.06  Aligned_cols=154  Identities=17%  Similarity=0.121  Sum_probs=89.4

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCCEEEE--------ECCCCCC--C--------------------Cc--cccC
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY--------NSRSKKP--V--------------------PY--AFYS  203 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~--------~~~~~~~--~--------------------~~--~~~~  203 (331)
                      |.+|.|+||.|=|+|++|+.+|+.|..+|++|++        |++..-.  .                    .+  ....
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i  302 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF  302 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence            4578999999999999999999999999999988        4432111  0                    00  0001


Q ss_pred             CHHhhh-cCCCEEEEeccCChhhhhhccHHHHhcCC--CCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCC
Q 020073          204 NVCELA-ANSDALIICCALTDQTRRMINREVMLALG--KEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYV  280 (331)
Q Consensus       204 ~l~ell-~~aDiV~l~~P~t~~t~~li~~~~l~~mk--~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~  280 (331)
                      +-++++ ..|||++-|     ++.+.|+.+...++.  .-.+++-.+-| .+..+| .+.|.++.|. .+=|+..+-=-.
T Consensus       303 ~~~~~~~~~cDVliPc-----Al~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA-~~iL~~rGI~-~vPD~~aNAGGV  374 (445)
T PRK14030        303 AGKKPWEQKVDIALPC-----ATQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEA-IDKFIAAKQL-FAPGKAVNAGGV  374 (445)
T ss_pred             CCccceeccccEEeec-----cccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHH-HHHHHHCCCE-EeCcceecCCCe
Confidence            223333 358888766     377788888777772  23477777778 455544 3667777665 223332211100


Q ss_pred             CCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 020073          281 PKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALF  319 (331)
Q Consensus       281 ~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~  319 (331)
                      -  .-.+..+-=.-|.-|...+..+++.+.+.+...+.+
T Consensus       375 i--vs~~E~~qn~~~~~w~~eeV~~~L~~~m~~~~~~v~  411 (445)
T PRK14030        375 A--TSGLEMSQNAMHLSWSAEEVDEKLHQIMSGIHEQCV  411 (445)
T ss_pred             e--eehhhhhccccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence            0  001111112245555566666666665555555544

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.45  E-value=0.008  Score=54.56  Aligned_cols=146  Identities=23%  Similarity=0.152  Sum_probs=85.9

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------CC-----------------c--cc-
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------VP-----------------Y--AF-  201 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~~-----------------~--~~-  201 (331)
                      ..|.+++|.|+|+|.+|..+|+.|...|+ +++.+|...-.              .+                 .  .. 
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~   96 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY   96 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            35889999999999999999999999998 67777643100              00                 0  00 


Q ss_pred             -----cCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCC
Q 020073          202 -----YSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFEN  276 (331)
Q Consensus       202 -----~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~  276 (331)
                           ..++++++.++|+|+.|+. +.+++.++++...+   .+.-+|..+-              .|. .|.. -++.+
T Consensus        97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g~--------------~g~-~g~v-~~~~p  156 (228)
T cd00757          97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGAV--------------LGF-EGQV-TVFIP  156 (228)
T ss_pred             cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEEe--------------ccC-EEEE-EEECC
Confidence                 1234567888999888875 56677777665543   3445566542              122 2221 12211


Q ss_pred             C--CCCCCccccCC-ce-EEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 020073          277 E--PYVPKELLELD-NV-VLQPHRAVFTSECFVDLCELAVGNLEALFSNQP  323 (331)
Q Consensus       277 E--P~~~~~L~~~~-nv-ilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  323 (331)
                      .  | ....++... .- .-++..++...-...-++.+++..+.+++.|.+
T Consensus       157 ~~~~-c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~a~e~i~~l~g~~  206 (228)
T cd00757         157 GEGP-CYRCLFPEPPPPGVPSCAEAGVLGPLVGVIGSLQALEALKILLGIG  206 (228)
T ss_pred             CCCC-CccccCCCCCCCCCCccccCCcchhHHHHHHHHHHHHHHHHHhCCC
Confidence            1  1 011111110 00 123344555555566778888888999998874

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.42  E-value=0.0052  Score=51.57  Aligned_cols=104  Identities=24%  Similarity=0.273  Sum_probs=68.6

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCcc--------------ccCCHHhhhcCCCEEEEeccCChh
Q 020073          164 VGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYA--------------FYSNVCELAANSDALIICCALTDQ  224 (331)
Q Consensus       164 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~--------------~~~~l~ell~~aDiV~l~~P~t~~  224 (331)
                      |+|+|.|.||..+|.+|+..|.+|..+.|....     .+..              ...+..+.....|+|++|+... +
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~-~   79 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY-Q   79 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-G
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-c
Confidence            689999999999999999899999999887610     0100              0111234678899999998643 4


Q ss_pred             hhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEE
Q 020073          225 TRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAG  270 (331)
Q Consensus       225 t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~  270 (331)
                      +...+.. .-..+.+.+.++-.--| +-.++.+.+.+...++.++.
T Consensus        80 ~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~  123 (151)
T PF02558_consen   80 LEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV  123 (151)
T ss_dssp             HHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred             hHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence            4545533 44455676677766544 55567777777566665443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.38  E-value=0.0096  Score=47.44  Aligned_cols=74  Identities=15%  Similarity=0.172  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhhCCCEEEEECCCCCC----C-----CccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcE
Q 020073          172 IGLQVAKRLQAFGCNVLYNSRSKKP----V-----PYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGI  242 (331)
Q Consensus       172 IG~~~A~~l~~~G~~V~~~~~~~~~----~-----~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~  242 (331)
                      -+..+++.|+..|++|.+||+....    .     +.....++++.++.+|+|+++++.. +-+.+--.+....|+++.+
T Consensus        18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~~~~~~~~~~~~~   96 (106)
T PF03720_consen   18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELDWEEIAKLMRKPPV   96 (106)
T ss_dssp             HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCGHHHHHHHSCSSEE
T ss_pred             HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccCHHHHHHhcCCCCE
Confidence            4678999999999999999998654    1     1233568999999999999998744 4444333445567888999


Q ss_pred             EEEc
Q 020073          243 IVNV  246 (331)
Q Consensus       243 lIn~  246 (331)
                      +|++
T Consensus        97 iiD~  100 (106)
T PF03720_consen   97 IIDG  100 (106)
T ss_dssp             EEES
T ss_pred             EEEC
Confidence            9997

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.37  E-value=0.01  Score=56.13  Aligned_cols=55  Identities=24%  Similarity=0.274  Sum_probs=41.1

Q ss_pred             EEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-----C---------Cc--c--ccCCHHhhhcCCCEEEEec
Q 020073          164 VGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-----V---------PY--A--FYSNVCELAANSDALIICC  219 (331)
Q Consensus       164 vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-----~---------~~--~--~~~~l~ell~~aDiV~l~~  219 (331)
                      |+|||.|.||..+|..+...|. +|+.+|.+.+.     .         ..  .  ...+. +.+++||+|+++.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~   74 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITA   74 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEec
Confidence            6899999999999999886654 99999987543     0         00  0  11343 5689999999987

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.35  E-value=0.024  Score=55.21  Aligned_cols=144  Identities=17%  Similarity=0.222  Sum_probs=93.7

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------------C-----------C--ccccCCHHhhhcCCCEE
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------------V-----------P--YAFYSNVCELAANSDAL  215 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~-----------~--~~~~~~l~ell~~aDiV  215 (331)
                      ++|.|+|.|-+|-..+..+..+|.+|+.+|..+.+             .           .  .....+..++++++|++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~   80 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV   80 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence            47999999999999999999999999999876543             0           0  12345788899999999


Q ss_pred             EEeccCChhhhhhcc--------HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeec-CCCCCCCC----C
Q 020073          216 IICCALTDQTRRMIN--------REVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDV-FENEPYVP----K  282 (331)
Q Consensus       216 ~l~~P~t~~t~~li~--------~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV-~~~EP~~~----~  282 (331)
                      ++|+|..+...+-+|        ++..+.++..+++|+=|.-.+=-.+.+.+-+....-.. -.+| |.+|=+-.    .
T Consensus        81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~Av~  159 (414)
T COG1004          81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSAVY  159 (414)
T ss_pred             EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcchhh
Confidence            999986554344333        33455567669999988877766666666555544322 2333 34444322    1


Q ss_pred             ccccCCceEEcCCCCCCcHHHHHHHHHH
Q 020073          283 ELLELDNVVLQPHRAVFTSECFVDLCEL  310 (331)
Q Consensus       283 ~L~~~~nvilTPH~a~~t~~~~~~~~~~  310 (331)
                      ..+..+++++    |..+..+...+.++
T Consensus       160 D~~~PdRIVi----G~~~~~a~~~~~el  183 (414)
T COG1004         160 DFLYPDRIVI----GVRSERAAAVLREL  183 (414)
T ss_pred             hccCCCeEEE----ccCChhHHHHHHHH
Confidence            3555667774    44444433333333

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=96.34  E-value=0.0077  Score=50.40  Aligned_cols=86  Identities=17%  Similarity=0.300  Sum_probs=52.3

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEE
Q 020073          164 VGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGII  243 (331)
Q Consensus       164 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~l  243 (331)
                      +.|+|.|.+|+++++.++.+|++|+++|+.++.            +..++-+. +.+.. .   +.  +.+ .+.+.+.+
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~------------~~~~~~~~-~~~~~-~---~~--~~~-~~~~~t~V   60 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER------------FPEADEVI-CIPPD-D---IL--EDL-EIDPNTAV   60 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-------------TTSSEEE-CSHHH-H---HH--HHC--S-TT-EE
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc------------cCCCCccE-ecChH-H---HH--hcc-CCCCCeEE
Confidence            469999999999999999999999999876432            12344322 22211 1   11  111 35666666


Q ss_pred             EEcCCCCccCHHHHHHHHHhCCceEEEe
Q 020073          244 VNVGRGAVIDENEMVRCLVRGEIAGAGL  271 (331)
Q Consensus       244 In~srg~~vd~~al~~aL~~~~i~ga~l  271 (331)
                      | ++++.-.|.++|..+|++ ...+.|+
T Consensus        61 v-~th~h~~D~~~L~~~l~~-~~~YiG~   86 (136)
T PF13478_consen   61 V-MTHDHELDAEALEAALAS-PARYIGL   86 (136)
T ss_dssp             E---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred             E-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence            6 889999999999999988 4544554

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.32  E-value=0.022  Score=56.31  Aligned_cols=86  Identities=21%  Similarity=0.266  Sum_probs=63.5

Q ss_pred             cCCCceEEEEec----------ChHHHHHHHHHhhCCCEEEEECCCCCCC---CccccCCHHhhhcCCCEEEEeccCChh
Q 020073          158 KLGGKRVGIVGL----------GNIGLQVAKRLQAFGCNVLYNSRSKKPV---PYAFYSNVCELAANSDALIICCALTDQ  224 (331)
Q Consensus       158 ~l~g~~vgIiG~----------G~IG~~~A~~l~~~G~~V~~~~~~~~~~---~~~~~~~l~ell~~aDiV~l~~P~t~~  224 (331)
                      .+.|++|+|+|+          .+-...+++.|...|.+|.+||+.....   ......+++++++++|+|+++.+.. +
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t~~~-~  388 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILTDHD-E  388 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEecCCH-H
Confidence            368999999998          5678899999999999999999975441   1112468899999999999998654 3


Q ss_pred             hhhhccHHHHhc-CCCCcEEEEc
Q 020073          225 TRRMINREVMLA-LGKEGIIVNV  246 (331)
Q Consensus       225 t~~li~~~~l~~-mk~ga~lIn~  246 (331)
                      .+. ++-+.+.. |+ ..+++++
T Consensus       389 ~~~-~~~~~~~~~~~-~~~v~D~  409 (411)
T TIGR03026       389 FKD-LDLEKIKDLMK-GKVVVDT  409 (411)
T ss_pred             Hhc-cCHHHHHHhcC-CCEEEeC
Confidence            333 34444444 54 4578874

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.32  E-value=0.01  Score=58.66  Aligned_cols=104  Identities=18%  Similarity=0.241  Sum_probs=68.4

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC---Cc---cccCCHHhhhcCCCEEEEeccCChhhh--------
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV---PY---AFYSNVCELAANSDALIICCALTDQTR--------  226 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~---~~---~~~~~l~ell~~aDiV~l~~P~t~~t~--------  226 (331)
                      .++|.|||+|.+|.++|+.|+..|.+|.++|++....   ..   ......+....++|+|+.+.+..+...        
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~   82 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS   82 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence            4689999999999999999999999999999765431   10   111223334577998887764432111        


Q ss_pred             --hhccHHHH--hc--C-CCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073          227 --RMINREVM--LA--L-GKEGIIVNVGRGAVIDENEMVRCLVRG  264 (331)
Q Consensus       227 --~li~~~~l--~~--m-k~ga~lIn~srg~~vd~~al~~aL~~~  264 (331)
                        .+++...+  ..  + ....+-|--+-|+.-..+-+...|+..
T Consensus        83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~  127 (418)
T PRK00683         83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRL  127 (418)
T ss_pred             CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHc
Confidence              12333222  11  2 223577888889988888888888764

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=96.31  E-value=0.015  Score=56.15  Aligned_cols=88  Identities=17%  Similarity=0.248  Sum_probs=56.9

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhC-CCEEE-EECCCC--CC-C----C---c---cccC--CHHhhhcCCCEEEEeccCCh
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAF-GCNVL-YNSRSK--KP-V----P---Y---AFYS--NVCELAANSDALIICCALTD  223 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~-G~~V~-~~~~~~--~~-~----~---~---~~~~--~l~ell~~aDiV~l~~P~t~  223 (331)
                      .+|+|+|. |.+|+.+++.|... +.++. .+++..  .+ .    +   .   ..+.  +.++++.++|+|++|+|.. 
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~-   79 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG-   79 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence            37999997 99999999999976 66777 334332  11 1    1   0   0122  4456667899999999955 


Q ss_pred             hhhhhccHHHHhcCCCCcEEEEcCCCCccCH
Q 020073          224 QTRRMINREVMLALGKEGIIVNVGRGAVIDE  254 (331)
Q Consensus       224 ~t~~li~~~~l~~mk~ga~lIn~srg~~vd~  254 (331)
                      ....+.. ..   .+.|..+|+.|-.--.+.
T Consensus        80 ~s~~~~~-~~---~~~G~~VIDlS~~fR~~~  106 (346)
T TIGR01850        80 VSAELAP-EL---LAAGVKVIDLSADFRLKD  106 (346)
T ss_pred             HHHHHHH-HH---HhCCCEEEeCChhhhcCC
Confidence            2233321 11   257899999986555553

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.30  E-value=0.026  Score=53.67  Aligned_cols=60  Identities=20%  Similarity=0.316  Sum_probs=48.9

Q ss_pred             CCCceEEEEec---ChHHHHHHHHHhhCCCEEEEECCCCCC-C---CccccCCHHhhhcCCCEEEEe
Q 020073          159 LGGKRVGIVGL---GNIGLQVAKRLQAFGCNVLYNSRSKKP-V---PYAFYSNVCELAANSDALIIC  218 (331)
Q Consensus       159 l~g~~vgIiG~---G~IG~~~A~~l~~~G~~V~~~~~~~~~-~---~~~~~~~l~ell~~aDiV~l~  218 (331)
                      +.|++|++||=   +++..+++..+..||++|.+..+..-. .   ......+++++++++|+|...
T Consensus       154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvyt~  220 (305)
T PRK00856        154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVMML  220 (305)
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEEEC
Confidence            78999999996   699999999999999999988765422 1   123467899999999998874

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=96.30  E-value=0.051  Score=54.38  Aligned_cols=108  Identities=19%  Similarity=0.251  Sum_probs=75.8

Q ss_pred             CCCceEEEEec----ChHHHHHHHHHhhCCC--EEEEECCCCCC-CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073          159 LGGKRVGIVGL----GNIGLQVAKRLQAFGC--NVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       159 l~g~~vgIiG~----G~IG~~~A~~l~~~G~--~V~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      ++=++|+|||.    |++|..+.+.++..|+  +|+.+++.... .+...+.+++++-...|++++++|.. .+...+.+
T Consensus         5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~~-~~~~~l~e   83 (447)
T TIGR02717         5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPAK-YVPQVVEE   83 (447)
T ss_pred             cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCHH-HHHHHHHH
Confidence            45578999999    8899999999998887  78888887655 45566789999988899999999944 44445532


Q ss_pred             HHHhcCCCCcE-EEEcCCCCc-----cCHHHHHHHHHhCCceEE
Q 020073          232 EVMLALGKEGI-IVNVGRGAV-----IDENEMVRCLVRGEIAGA  269 (331)
Q Consensus       232 ~~l~~mk~ga~-lIn~srg~~-----vd~~al~~aL~~~~i~ga  269 (331)
                       ..+ .+-.++ ++.-+-++.     -.++++.++.+.+.++-.
T Consensus        84 -~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl  125 (447)
T TIGR02717        84 -CGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL  125 (447)
T ss_pred             -HHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence             222 333344 443333332     236778888888776633

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.30  E-value=0.011  Score=56.53  Aligned_cols=61  Identities=20%  Similarity=0.255  Sum_probs=45.7

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC--------CCc-------cccCCHHhhhcCCCEEEEecc
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP--------VPY-------AFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~--------~~~-------~~~~~l~ell~~aDiV~l~~P  220 (331)
                      ++++|+|||.|.+|..+|-.+...|.  ++..+|.+...        ...       ....+-.+.+++||+|+++.-
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag   82 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG   82 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence            46799999999999999999988787  79999986653        000       001123456899999999873

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.29  E-value=0.014  Score=55.02  Aligned_cols=38  Identities=16%  Similarity=0.279  Sum_probs=33.8

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCC
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~  195 (331)
                      ++.|+++.|+|.|..+++++-.+...|. +|.+++|+..
T Consensus       121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE  159 (288)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            4678999999999999999999988897 7999999853

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.29  E-value=0.08  Score=49.52  Aligned_cols=179  Identities=17%  Similarity=0.169  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhC----CC-------EEE
Q 020073          120 AADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAF----GC-------NVL  188 (331)
Q Consensus       120 vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~----G~-------~V~  188 (331)
                      +|=.+++-+|+.+|-                    .|++|...++.|+|.|.-|-.+|+.+...    |.       +++
T Consensus         4 Ta~V~lAgllnAlk~--------------------~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~   63 (279)
T cd05312           4 TAAVALAGLLAALRI--------------------TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIW   63 (279)
T ss_pred             HHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEE
Confidence            455677777776653                    24568899999999999999999999776    77       788


Q ss_pred             EECCCCC------CC-----Cc----c--ccCCHHhhhc--CCCEEEEeccCChhhhhhccHHHHhcCC---CCcEEEEc
Q 020073          189 YNSRSKK------PV-----PY----A--FYSNVCELAA--NSDALIICCALTDQTRRMINREVMLALG---KEGIIVNV  246 (331)
Q Consensus       189 ~~~~~~~------~~-----~~----~--~~~~l~ell~--~aDiV~l~~P~t~~t~~li~~~~l~~mk---~ga~lIn~  246 (331)
                      .+|+..-      ..     .+    .  ...+|.|+++  ++|+++-+-    ..-++|+++.++.|.   +..++.=.
T Consensus        64 ~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaL  139 (279)
T cd05312          64 LVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFAL  139 (279)
T ss_pred             EEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence            8887531      00     00    1  2348999999  899888652    134799999999998   78999999


Q ss_pred             CCCCccCHHHHHHHHH--hCC-ceEEEeecCCCCCCCC-CccccCCceEEcCCCCCCcH-----HHHHHHHHHHHHHHHH
Q 020073          247 GRGAVIDENEMVRCLV--RGE-IAGAGLDVFENEPYVP-KELLELDNVVLQPHRAVFTS-----ECFVDLCELAVGNLEA  317 (331)
Q Consensus       247 srg~~vd~~al~~aL~--~~~-i~ga~lDV~~~EP~~~-~~L~~~~nvilTPH~a~~t~-----~~~~~~~~~~~~nl~~  317 (331)
                      |...---|-.-.++.+  +|+ |.+.|.-.-..+..-. ...=...|+++-|=++-..-     .--+.|...+++-|.+
T Consensus       140 SNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~  219 (279)
T cd05312         140 SNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALAS  219 (279)
T ss_pred             CCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHH
Confidence            8876633433333333  344 6555532111111000 01224568999998764322     2235677777777776


Q ss_pred             HHcCC
Q 020073          318 LFSNQ  322 (331)
Q Consensus       318 ~~~g~  322 (331)
                      +..-+
T Consensus       220 ~~~~~  224 (279)
T cd05312         220 LVTDE  224 (279)
T ss_pred             hCCcc
Confidence            65433

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.27  E-value=0.08  Score=48.84  Aligned_cols=175  Identities=15%  Similarity=0.110  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCC-----------EEE
Q 020073          120 AADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGC-----------NVL  188 (331)
Q Consensus       120 vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-----------~V~  188 (331)
                      +|=.+++-+|+.+|-                    .|++|...++.|+|.|.-|-.+|+.+...+.           +++
T Consensus         4 TaaV~lAgllnAlk~--------------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~   63 (254)
T cd00762           4 TASVAVAGLLAALKV--------------------TKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIW   63 (254)
T ss_pred             hHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEE
Confidence            455677777776662                    2456889999999999999999999987655           588


Q ss_pred             EECCCCC------C-----CC---c----cccCCHHhhhc--CCCEEEEeccCChhhhhhccHHHHhcCC---CCcEEEE
Q 020073          189 YNSRSKK------P-----VP---Y----AFYSNVCELAA--NSDALIICCALTDQTRRMINREVMLALG---KEGIIVN  245 (331)
Q Consensus       189 ~~~~~~~------~-----~~---~----~~~~~l~ell~--~aDiV~l~~P~t~~t~~li~~~~l~~mk---~ga~lIn  245 (331)
                      .+|+..-      .     ..   +    ....+|.|+++  ++|+++-..    ...+++.++.+..|.   +..++.=
T Consensus        64 ~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFa  139 (254)
T cd00762          64 XVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFA  139 (254)
T ss_pred             EECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEE
Confidence            8876521      0     01   1    11248999999  999888642    235799999999998   8899998


Q ss_pred             cCCCCcc---CHHHHHHHHHhCCceEEEeecCCCCCCCCCc---cccCCceEEcCCCCCCcHH-----HHHHHHHHHHHH
Q 020073          246 VGRGAVI---DENEMVRCLVRGEIAGAGLDVFENEPYVPKE---LLELDNVVLQPHRAVFTSE-----CFVDLCELAVGN  314 (331)
Q Consensus       246 ~srg~~v---d~~al~~aL~~~~i~ga~lDV~~~EP~~~~~---L~~~~nvilTPH~a~~t~~-----~~~~~~~~~~~n  314 (331)
                      .|...--   ..++.+++=+...|.+.|.-.+..+-  +..   .-...|+++-|=++-....     --+.|...+++-
T Consensus       140 LSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~--~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~a  217 (254)
T cd00762         140 LSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVEL--NGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEA  217 (254)
T ss_pred             CCCcCCccccCHHHHHhhcCCCEEEEECCCCCCccc--CCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHH
Confidence            8887763   33444443333345544442221111  111   2256699999987653322     235666666666


Q ss_pred             HHHHHc
Q 020073          315 LEALFS  320 (331)
Q Consensus       315 l~~~~~  320 (331)
                      |-.+..
T Consensus       218 LA~~v~  223 (254)
T cd00762         218 IASSVT  223 (254)
T ss_pred             HHhhCC
Confidence            666553

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.27  E-value=0.0071  Score=54.38  Aligned_cols=89  Identities=27%  Similarity=0.281  Sum_probs=61.8

Q ss_pred             CCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--------CC--ccc-cCCHHhhhcCCCEEEEeccC
Q 020073          153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--------VP--YAF-YSNVCELAANSDALIICCAL  221 (331)
Q Consensus       153 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--------~~--~~~-~~~l~ell~~aDiV~l~~P~  221 (331)
                      +|..-++.|++|.|||.|.+|..=++.+...|.+|+++++...+        ..  ... .-+. +.+..+++|+.+++.
T Consensus         4 lPl~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~-~~~~~~~lviaAt~d   82 (210)
T COG1648           4 LPLFLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDA-EDLDDAFLVIAATDD   82 (210)
T ss_pred             cceEEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccCh-hhhcCceEEEEeCCC
Confidence            34556799999999999999999999999999999999887633        01  000 1122 234448888888764


Q ss_pred             ChhhhhhccHHHHhcCCCCcEEEEcC
Q 020073          222 TDQTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       222 t~~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      .+     +|+..+...++-.++||+.
T Consensus        83 ~~-----ln~~i~~~a~~~~i~vNv~  103 (210)
T COG1648          83 EE-----LNERIAKAARERRILVNVV  103 (210)
T ss_pred             HH-----HHHHHHHHHHHhCCceecc
Confidence            32     3455555555556777774

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=96.26  E-value=0.0092  Score=60.97  Aligned_cols=39  Identities=28%  Similarity=0.416  Sum_probs=35.2

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .++.++++.|+|.|.+|++++..|...|++|++++|+.+
T Consensus       375 ~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e  413 (529)
T PLN02520        375 SPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYE  413 (529)
T ss_pred             cCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            357899999999999999999999999999999998754

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=96.24  E-value=0.097  Score=50.38  Aligned_cols=89  Identities=11%  Similarity=0.001  Sum_probs=62.5

Q ss_pred             cCCCceEEEEecC--hHHHHHHHHHhhCCCEEEEECCCCCC-C--------------C--ccccCCHHhhhcCCCEEEEe
Q 020073          158 KLGGKRVGIVGLG--NIGLQVAKRLQAFGCNVLYNSRSKKP-V--------------P--YAFYSNVCELAANSDALIIC  218 (331)
Q Consensus       158 ~l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~-~--------------~--~~~~~~l~ell~~aDiV~l~  218 (331)
                      .+.|++|++||=+  ++.++++..+..+|++|.+..+..-. .              +  +....+++++++++|+|..-
T Consensus       153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~  232 (334)
T PRK01713        153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD  232 (334)
T ss_pred             CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            4789999999975  67888999999999999988764211 0              1  12357899999999999873


Q ss_pred             c----cC---Chhh------hhhccHHHHhcC-CCCcEEEEc
Q 020073          219 C----AL---TDQT------RRMINREVMLAL-GKEGIIVNV  246 (331)
Q Consensus       219 ~----P~---t~~t------~~li~~~~l~~m-k~ga~lIn~  246 (331)
                      .    ..   ..+.      ...++++.++.. |++++|.-+
T Consensus       233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~  274 (334)
T PRK01713        233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHC  274 (334)
T ss_pred             ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECC
Confidence            2    10   0011      123677888875 688888765

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.23  E-value=0.0096  Score=58.00  Aligned_cols=57  Identities=25%  Similarity=0.360  Sum_probs=44.0

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCcc---cc---CCHHhhhcCCCEEEE
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYA---FY---SNVCELAANSDALII  217 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~---~~---~~l~ell~~aDiV~l  217 (331)
                      +++|||||.|..|+.+++.++.+|++|+++++.+..     ....   .+   ..+.++++.+|+|+.
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence            478999999999999999999999999999987544     1100   11   236678888998764

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.20  E-value=0.023  Score=53.85  Aligned_cols=107  Identities=15%  Similarity=0.181  Sum_probs=68.9

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C-Ccc--------c---cCCHHhhhcCCCEEEEeccCCh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V-PYA--------F---YSNVCELAANSDALIICCALTD  223 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~-~~~--------~---~~~l~ell~~aDiV~l~~P~t~  223 (331)
                      ++|+|+|.|.||..+|-.|...|.+|.++.|....      . +..        .   .....+.....|+|++|+=.. 
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~-   81 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY-   81 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence            47999999999999999999999999998886421      0 110        0   011122346789999996422 


Q ss_pred             hhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEe
Q 020073          224 QTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGL  271 (331)
Q Consensus       224 ~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~l  271 (331)
                      .+...+ +.....+.+++.+|-.--| +-.++.+.+.+...++.++..
T Consensus        82 ~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~~  127 (305)
T PRK05708         82 DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFASS  127 (305)
T ss_pred             hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEEe
Confidence            233333 3344556778877666433 345667777876666655544

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.19  E-value=0.033  Score=55.36  Aligned_cols=107  Identities=18%  Similarity=0.239  Sum_probs=71.7

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------CCcc--ccCCHHhhhcCCCEEEEeccCChh
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------VPYA--FYSNVCELAANSDALIICCALTDQ  224 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------~~~~--~~~~l~ell~~aDiV~l~~P~t~~  224 (331)
                      ++.++++.|+|.|.+|.++|+.|...|++|+++++....           .+..  .....++....+|+|+.+.-..+.
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~   81 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD   81 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence            467999999999999999999999999999999987522           0111  112234566789999987532222


Q ss_pred             hhhh----------cc-HHHHhc-CCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073          225 TRRM----------IN-REVMLA-LGKEGIIVNVGRGAVIDENEMVRCLVRG  264 (331)
Q Consensus       225 t~~l----------i~-~~~l~~-mk~ga~lIn~srg~~vd~~al~~aL~~~  264 (331)
                      ..-+          +. .+.+.+ .+...+-|--+.|+....+-|...|+..
T Consensus        82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~  133 (450)
T PRK14106         82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNA  133 (450)
T ss_pred             CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHc
Confidence            1111          11 111222 2334677777889999888888888763

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=96.16  E-value=0.0063  Score=60.44  Aligned_cols=59  Identities=12%  Similarity=0.178  Sum_probs=44.1

Q ss_pred             eEEEEecChHHHHHHH---HH---hhCCCEEEEECCCCCC--------------C----CccccCCHHhhhcCCCEEEEe
Q 020073          163 RVGIVGLGNIGLQVAK---RL---QAFGCNVLYNSRSKKP--------------V----PYAFYSNVCELAANSDALIIC  218 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~---~l---~~~G~~V~~~~~~~~~--------------~----~~~~~~~l~ell~~aDiV~l~  218 (331)
                      +|+|||.|++|...+-   .+   ...|.+|..+|+.++.              .    ......++.++++.||+|+.+
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~a   81 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINT   81 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEe
Confidence            6999999999998555   22   3346799999987643              0    011245788999999999999


Q ss_pred             ccC
Q 020073          219 CAL  221 (331)
Q Consensus       219 ~P~  221 (331)
                      +|.
T Consensus        82 i~~   84 (423)
T cd05297          82 IQV   84 (423)
T ss_pred             eEe
Confidence            983

linked to 3D####ucture

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=96.16  E-value=0.05  Score=54.20  Aligned_cols=105  Identities=21%  Similarity=0.246  Sum_probs=68.8

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCCEEE-EECCCCC---CCCc----------------------------cccC
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YNSRSKK---PVPY----------------------------AFYS  203 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~~~~~~---~~~~----------------------------~~~~  203 (331)
                      +.++.|+||.|=|+|++|+.+|+.|..+|++|+ +.|.+..   +.+.                            ..+.
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~  311 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV  311 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence            457999999999999999999999999999998 4444310   0000                            0001


Q ss_pred             CHHhhh-cCCCEEEEeccCChhhhhhccHHHHhcC-CCCc-EEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          204 NVCELA-ANSDALIICCALTDQTRRMINREVMLAL-GKEG-IIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       204 ~l~ell-~~aDiV~l~~P~t~~t~~li~~~~l~~m-k~ga-~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      +-++++ -.||+.+-|     ++.+.|+.+..+.+ +.++ +++-.+-+.+-.  +-.+.|+++.|.
T Consensus       312 ~~~~~~~~~cDI~iPc-----A~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~--eA~~~L~~~GI~  371 (454)
T PTZ00079        312 PGKKPWEVPCDIAFPC-----ATQNEINLEDAKLLIKNGCKLVAEGANMPTTI--EATHLFKKNGVI  371 (454)
T ss_pred             CCcCcccCCccEEEec-----cccccCCHHHHHHHHHcCCeEEEecCCCCCCH--HHHHHHHHCCcE
Confidence            112222 358887766     36778888877755 4444 566666677654  345677777765

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.15  E-value=0.011  Score=54.45  Aligned_cols=79  Identities=27%  Similarity=0.368  Sum_probs=54.3

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------CC-----------------c--cc-
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------VP-----------------Y--AF-  201 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~~-----------------~--~~-  201 (331)
                      ..|++++|+|||+|.+|..+|+.|...|. ++.++|...-.              .+                 .  .. 
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~  107 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI  107 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence            46899999999999999999999999898 67776643110              00                 0  00 


Q ss_pred             -----cCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhc
Q 020073          202 -----YSNVCELAANSDALIICCALTDQTRRMINREVMLA  236 (331)
Q Consensus       202 -----~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~  236 (331)
                           ..+++++++++|+|+.|+- +.+++..+++.....
T Consensus       108 ~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~  146 (245)
T PRK05690        108 NARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFAA  146 (245)
T ss_pred             eccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHh
Confidence                 0124567888898888873 556777776655444

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.10  E-value=0.018  Score=52.76  Aligned_cols=78  Identities=26%  Similarity=0.360  Sum_probs=53.9

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------CC----------------c---c--
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------VP----------------Y---A--  200 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~~----------------~---~--  200 (331)
                      ..|++++|.|+|+|.+|..+|+.|...|. +++.+|...-.              .+                .   .  
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~   99 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI   99 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence            35889999999999999999999999898 67777653211              00                0   0  


Q ss_pred             --cc--CCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073          201 --FY--SNVCELAANSDALIICCALTDQTRRMINREVML  235 (331)
Q Consensus       201 --~~--~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~  235 (331)
                        ..  .++.++++++|+|+.|+ .+.+++..+++...+
T Consensus       100 ~~~i~~~~~~~~~~~~DlVvd~~-D~~~~r~~ln~~~~~  137 (240)
T TIGR02355       100 NAKLDDAELAALIAEHDIVVDCT-DNVEVRNQLNRQCFA  137 (240)
T ss_pred             eccCCHHHHHHHhhcCCEEEEcC-CCHHHHHHHHHHHHH
Confidence              00  12456778888888776 355677777665544

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.09  E-value=0.011  Score=59.24  Aligned_cols=90  Identities=20%  Similarity=0.151  Sum_probs=61.0

Q ss_pred             CCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CC-ccc--cCCHHhhhcCCCEEEEeccCC
Q 020073          153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VP-YAF--YSNVCELAANSDALIICCALT  222 (331)
Q Consensus       153 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~-~~~--~~~l~ell~~aDiV~l~~P~t  222 (331)
                      +|..-+|+|++|.|||.|.++..=++.|..+|++|+++++...+       .+ ...  ..-..+.+..+++|+.++...
T Consensus         4 ~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~   83 (457)
T PRK10637          4 LPIFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDD   83 (457)
T ss_pred             eceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCH
Confidence            45556899999999999999999999999999999999876443       01 110  011234678899888886533


Q ss_pred             hhhhhhccHHHHhcCCCCcEEEEcC
Q 020073          223 DQTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       223 ~~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      .     +|++.....+...+++|++
T Consensus        84 ~-----~n~~i~~~a~~~~~lvN~~  103 (457)
T PRK10637         84 A-----VNQRVSEAAEARRIFCNVV  103 (457)
T ss_pred             H-----HhHHHHHHHHHcCcEEEEC
Confidence            2     3444444444445666654

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.08  E-value=0.0093  Score=51.34  Aligned_cols=60  Identities=23%  Similarity=0.169  Sum_probs=47.2

Q ss_pred             EEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC-C---C-------ccccCCHHhhhcCCCEEEEeccCCh
Q 020073          164 VGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP-V---P-------YAFYSNVCELAANSDALIICCALTD  223 (331)
Q Consensus       164 vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~---~-------~~~~~~l~ell~~aDiV~l~~P~t~  223 (331)
                      |.|+| .|.+|+.+++.|...|.+|++..|++.+ .   +       .....++.++++.+|.|+.+++.+.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~   72 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP   72 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence            67899 4999999999999999999999988764 1   1       1112356788999999999997543

...

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=96.08  E-value=0.15  Score=48.51  Aligned_cols=88  Identities=15%  Similarity=0.156  Sum_probs=61.8

Q ss_pred             CCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCC------------C--ccccCCHHhhhcCCCEEEEec----
Q 020073          159 LGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPV------------P--YAFYSNVCELAANSDALIICC----  219 (331)
Q Consensus       159 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~------------~--~~~~~~l~ell~~aDiV~l~~----  219 (331)
                      +.|.+|+++|- +++.++++..+..+|++|.+..+..-..            +  .....+++++++++|+|..-.    
T Consensus       150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~  229 (304)
T PRK00779        150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSM  229 (304)
T ss_pred             cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCcccc
Confidence            67899999996 8899999999999999999887643211            1  123478999999999998742    


Q ss_pred             cCCh---h-----hhhhccHHHHhcCCCCcEEEEc
Q 020073          220 ALTD---Q-----TRRMINREVMLALGKEGIIVNV  246 (331)
Q Consensus       220 P~t~---~-----t~~li~~~~l~~mk~ga~lIn~  246 (331)
                      ....   +     -..-++++.++.+|+++++.-+
T Consensus       230 ~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHp  264 (304)
T PRK00779        230 GQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHC  264 (304)
T ss_pred             ccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecC
Confidence            1100   0     1223466677777777666654

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=96.02  E-value=0.16  Score=48.89  Aligned_cols=89  Identities=13%  Similarity=0.142  Sum_probs=63.8

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC-----C----------C--ccccCCHHhhhcCCCEEEEec
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP-----V----------P--YAFYSNVCELAANSDALIICC  219 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~----------~--~~~~~~l~ell~~aDiV~l~~  219 (331)
                      .+.|.+|++||= .++..+++..+..+|++|.++.+..-.     .          +  +....+++++++++|+|..-.
T Consensus       151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~  230 (338)
T PRK02255        151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV  230 (338)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence            488999999995 788899999999999999988765321     0          1  123478999999999999832


Q ss_pred             -----cCC--h-h------hhhhccHHHHhcCCCCcEEEEc
Q 020073          220 -----ALT--D-Q------TRRMINREVMLALGKEGIIVNV  246 (331)
Q Consensus       220 -----P~t--~-~------t~~li~~~~l~~mk~ga~lIn~  246 (331)
                           ...  . +      ....++++.++.+|++++|.-+
T Consensus       231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHp  271 (338)
T PRK02255        231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHC  271 (338)
T ss_pred             cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCC
Confidence                 110  0 0      0144677788778887777665

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.00  E-value=0.006  Score=51.28  Aligned_cols=58  Identities=24%  Similarity=0.381  Sum_probs=44.2

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhCC--CEEEEECCCCCC--------------C--CccccCCHHhhhcCCCEEEEec
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAFG--CNVLYNSRSKKP--------------V--PYAFYSNVCELAANSDALIICC  219 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~G--~~V~~~~~~~~~--------------~--~~~~~~~l~ell~~aDiV~l~~  219 (331)
                      .+|+|||. |.+|+.+|-.|...+  -+++.+|+....              .  .........+.+++||+|+++.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvita   77 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITA   77 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETT
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEec
Confidence            37999999 999999999987544  489999987533              0  0111235678899999999988

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.99  E-value=0.091  Score=50.11  Aligned_cols=89  Identities=13%  Similarity=0.137  Sum_probs=66.7

Q ss_pred             HHHHHHHHHhhCCCEEEEECCCCCC------------------------CC-------------ccccCC--HHhhhcCC
Q 020073          172 IGLQVAKRLQAFGCNVLYNSRSKKP------------------------VP-------------YAFYSN--VCELAANS  212 (331)
Q Consensus       172 IG~~~A~~l~~~G~~V~~~~~~~~~------------------------~~-------------~~~~~~--l~ell~~a  212 (331)
                      ||..+|..+...|++|+.+|++++.                        .+             .....+  +.+++++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            6889999999999999999988731                        00             001112  55788999


Q ss_pred             CEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 020073          213 DALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLV  262 (331)
Q Consensus       213 DiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~  262 (331)
                      |+|+-++|.+.+.+.-+-++..+.++++++|...  -+.+....|.+.+.
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSn--tS~~~~~~la~~~~  128 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIAST--TSTFLVTDLQRHVA  128 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEc--cccCCHHHHHhhcC
Confidence            9999999999998888777777889999998544  44456666777664

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=95.96  E-value=0.14  Score=54.26  Aligned_cols=176  Identities=15%  Similarity=0.170  Sum_probs=114.7

Q ss_pred             CCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCC
Q 020073          105 RGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFG  184 (331)
Q Consensus       105 ~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G  184 (331)
                      .+|+|.|. +.+  -+|=.+++.+++.+|-                    .|+++...++.|.|.|.-|-.+|+.+...|
T Consensus       152 ~~ip~f~D-D~~--GTa~v~lA~l~na~~~--------------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G  208 (752)
T PRK07232        152 MDIPVFHD-DQH--GTAIISAAALLNALEL--------------------VGKKIEDVKIVVSGAGAAAIACLNLLVALG  208 (752)
T ss_pred             cCCCeecc-ccc--hHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECccHHHHHHHHHHHHcC
Confidence            36888887 333  3555677777776653                    345788999999999999999999999989


Q ss_pred             C---EEEEECCCC-------CCC--------CccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEc
Q 020073          185 C---NVLYNSRSK-------KPV--------PYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNV  246 (331)
Q Consensus       185 ~---~V~~~~~~~-------~~~--------~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~  246 (331)
                      .   +|+.+|+..       ...        ......+|.|+++.+|+++-. .    +.+.++++.+..|.+..++.=.
T Consensus       209 ~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~piifal  283 (752)
T PRK07232        209 AKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADNPIIFAL  283 (752)
T ss_pred             CCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEEEec
Confidence            8   788888652       100        001235899999999977754 2    2589999999999999999988


Q ss_pred             CCCCccCHHHHHHHHHh--CCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcH-----HHHHHHHHHHHHHHHHHH
Q 020073          247 GRGAVIDENEMVRCLVR--GEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTS-----ECFVDLCELAVGNLEALF  319 (331)
Q Consensus       247 srg~~vd~~al~~aL~~--~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~-----~~~~~~~~~~~~nl~~~~  319 (331)
                      |....  |-.-.+|.+.  |.|.+.|-   ...|.      +..|+++-|-++-..-     .-.+.|...+++-|-...
T Consensus       284 sNP~~--E~~p~~a~~~~~~~i~atGr---s~~pn------Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~  352 (752)
T PRK07232        284 ANPDP--EITPEEAKAVRPDAIIATGR---SDYPN------QVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAIAELA  352 (752)
T ss_pred             CCCCc--cCCHHHHHHhcCCEEEEECC---cCCCC------cccceeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhc
Confidence            88764  2222233333  34554441   12232      2358888887653222     123344444445444433

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=95.95  E-value=0.035  Score=52.91  Aligned_cols=91  Identities=19%  Similarity=0.179  Sum_probs=64.3

Q ss_pred             CCCceEEEEecChHHHHHHHHHhh-------CCCEEEEECCCC---C---C---------------------CCccccCC
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQA-------FGCNVLYNSRSK---K---P---------------------VPYAFYSN  204 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~-------~G~~V~~~~~~~---~---~---------------------~~~~~~~~  204 (331)
                      ..-++|+|||.|+-|+++|+.+..       |..+|..|-+..   .   .                     .......+
T Consensus        19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d   98 (372)
T KOG2711|consen   19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD   98 (372)
T ss_pred             cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence            344789999999999999999863       334554442211   0   0                     01123468


Q ss_pred             HHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCc
Q 020073          205 VCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAV  251 (331)
Q Consensus       205 l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~  251 (331)
                      +.+++.+||+++..+|.+ .+..++ ++...+.|+++..|...-|=-
T Consensus        99 l~ea~~dADilvf~vPhQ-f~~~ic-~~l~g~vk~~~~aISL~KG~e  143 (372)
T KOG2711|consen   99 LVEAAKDADILVFVVPHQ-FIPRIC-EQLKGYVKPGATAISLIKGVE  143 (372)
T ss_pred             HHHHhccCCEEEEeCChh-hHHHHH-HHHhcccCCCCeEEEeeccee
Confidence            999999999999999955 444444 667788999999999887743

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.95  E-value=0.0064  Score=59.37  Aligned_cols=79  Identities=18%  Similarity=0.219  Sum_probs=49.8

Q ss_pred             EEEEecChHHHHHHHHHhhCC-C-EEEEECCCCCC-----C------------CccccCCHHhhhcCCCEEEEeccCChh
Q 020073          164 VGIVGLGNIGLQVAKRLQAFG-C-NVLYNSRSKKP-----V------------PYAFYSNVCELAANSDALIICCALTDQ  224 (331)
Q Consensus       164 vgIiG~G~IG~~~A~~l~~~G-~-~V~~~~~~~~~-----~------------~~~~~~~l~ell~~aDiV~l~~P~t~~  224 (331)
                      |+|+|.|.+|+.+++.|...+ + +|++.+|+.++     .            +.....+|.++++++|+|+.|+|.. .
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~   79 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-F   79 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-G
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-h
Confidence            689999999999999998765 4 89999987653     0            0111234788999999999999744 1


Q ss_pred             hhhhccHHHHhcCCCCcEEEEcC
Q 020073          225 TRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       225 t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      ...++    -..++.|.-.||++
T Consensus        80 ~~~v~----~~~i~~g~~yvD~~   98 (386)
T PF03435_consen   80 GEPVA----RACIEAGVHYVDTS   98 (386)
T ss_dssp             HHHHH----HHHHHHT-EEEESS
T ss_pred             hHHHH----HHHHHhCCCeeccc
Confidence            11111    11135566677743

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.93  E-value=0.041  Score=49.50  Aligned_cols=37  Identities=32%  Similarity=0.463  Sum_probs=32.5

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS  193 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  193 (331)
                      ..|++++|+|||+|.+|..+|+.|...|. ++..+|..
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35889999999999999999999998898 58877765

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.93  E-value=0.025  Score=54.58  Aligned_cols=37  Identities=35%  Similarity=0.422  Sum_probs=33.3

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS  193 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  193 (331)
                      ..|.+++|.|||+|.+|..+|+.|...|. +|..+|..
T Consensus        20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35899999999999999999999999999 88888764

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=95.92  E-value=0.15  Score=49.58  Aligned_cols=61  Identities=13%  Similarity=0.175  Sum_probs=46.1

Q ss_pred             cCCCceEEEEecC--------hHHHHHHHHHhhCCCEEEEECCCCCC-----C----------C--ccccCCHHhhhcCC
Q 020073          158 KLGGKRVGIVGLG--------NIGLQVAKRLQAFGCNVLYNSRSKKP-----V----------P--YAFYSNVCELAANS  212 (331)
Q Consensus       158 ~l~g~~vgIiG~G--------~IG~~~A~~l~~~G~~V~~~~~~~~~-----~----------~--~~~~~~l~ell~~a  212 (331)
                      .++|++|+|+|.|        ++.++++..+..||++|.+..+..-.     .          +  .....+++++++++
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a  246 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA  246 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            3789999999853        45578888899999999988765321     0          1  12357899999999


Q ss_pred             CEEEEe
Q 020073          213 DALIIC  218 (331)
Q Consensus       213 DiV~l~  218 (331)
                      |+|..-
T Consensus       247 Dvvyt~  252 (357)
T TIGR03316       247 DIVYPK  252 (357)
T ss_pred             CEEEEC
Confidence            999876

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.91  E-value=0.018  Score=57.11  Aligned_cols=63  Identities=21%  Similarity=0.253  Sum_probs=47.9

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCcc-------ccCCHHhh-hcCCCEEEEeccCChh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYA-------FYSNVCEL-AANSDALIICCALTDQ  224 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~-------~~~~l~el-l~~aDiV~l~~P~t~~  224 (331)
                      +++.|+|+|.+|+.+|+.|...|.+|+++++++..       .+..       ....++++ +.++|.|+++++....
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~   78 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET   78 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence            36899999999999999999999999999886543       1111       11235566 7899999999886543

>PRK12861 malic enzyme; Reviewed

Probab=95.90  E-value=0.12  Score=54.87  Aligned_cols=176  Identities=15%  Similarity=0.163  Sum_probs=115.1

Q ss_pred             CcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCC
Q 020073          106 GIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGC  185 (331)
Q Consensus       106 gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~  185 (331)
                      .|++.|. +.+  -+|=.+++.+|+.+|-                    .|+++...+|.|.|.|.-|..+|+.+...|.
T Consensus       157 ~ipvf~D-D~q--GTa~v~lA~llnal~~--------------------~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~  213 (764)
T PRK12861        157 KIPVFHD-DQH--GTAITVSAAFINGLKV--------------------VGKSIKEVKVVTSGAGAAALACLDLLVDLGL  213 (764)
T ss_pred             CCCeecc-ccc--hHHHHHHHHHHHHHHH--------------------hCCChhHcEEEEECHhHHHHHHHHHHHHcCC
Confidence            7899887 334  3555677777876663                    3557889999999999999999999999998


Q ss_pred             ---EEEEECCCC-------C--C------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcC
Q 020073          186 ---NVLYNSRSK-------K--P------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       186 ---~V~~~~~~~-------~--~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                         +|+.+|+..       .  .      .......+|.|+++.+|+++-. .    +.+.++++.+..|.+.+++.=.|
T Consensus       214 ~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~advliG~-S----~~g~ft~e~v~~Ma~~PIIFaLs  288 (764)
T PRK12861        214 PVENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADVFLGL-S----AGGVLKAEMLKAMAARPLILALA  288 (764)
T ss_pred             ChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCEEEEc-C----CCCCCCHHHHHHhccCCEEEECC
Confidence               788888542       1  0      0001235899999999977654 2    25899999999999999999888


Q ss_pred             CCCc-cCHHHHHHHHHhCC-ceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcH-----HHHHHHHHHHHHHHHHHHc
Q 020073          248 RGAV-IDENEMVRCLVRGE-IAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTS-----ECFVDLCELAVGNLEALFS  320 (331)
Q Consensus       248 rg~~-vd~~al~~aL~~~~-i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~-----~~~~~~~~~~~~nl~~~~~  320 (331)
                      .... +..+..++  ..|+ |.+-|-   ...|      =+..|+++-|-++-..-     .-.+.|...+++-|-.+..
T Consensus       289 NPtpE~~pe~a~~--~~g~aivaTGr---s~~p------nQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~alA~~~~  357 (764)
T PRK12861        289 NPTPEIFPELAHA--TRDDVVIATGR---SDYP------NQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAGLAE  357 (764)
T ss_pred             CCCccCCHHHHHh--cCCCEEEEeCC---cCCC------CccceeeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhCC
Confidence            8663 12222222  2344 432211   1112      13458899887764222     2234555555555555443

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=95.87  E-value=0.19  Score=47.67  Aligned_cols=88  Identities=17%  Similarity=0.162  Sum_probs=61.4

Q ss_pred             CCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCC---------------C--ccccCCHHhhhcCCCEEEEec-
Q 020073          159 LGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPV---------------P--YAFYSNVCELAANSDALIICC-  219 (331)
Q Consensus       159 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~---------------~--~~~~~~l~ell~~aDiV~l~~-  219 (331)
                      +.|.+|+++|- +++.++++..+..||++|.+..+..-..               +  .....+++++++++|+|..-. 
T Consensus       146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w  225 (304)
T TIGR00658       146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW  225 (304)
T ss_pred             CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence            78999999995 7899999999999999998887643210               1  123468999999999998742 


Q ss_pred             -cCCh----------hhhhhccHHHHhcCCCCcEEEEc
Q 020073          220 -ALTD----------QTRRMINREVMLALGKEGIIVNV  246 (331)
Q Consensus       220 -P~t~----------~t~~li~~~~l~~mk~ga~lIn~  246 (331)
                       ....          .....++++.++.+|+++++.-+
T Consensus       226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHp  263 (304)
T TIGR00658       226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHC  263 (304)
T ss_pred             ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECC
Confidence             1000          01224567777777777666544

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PRK12862 malic enzyme; Reviewed

Probab=95.86  E-value=0.18  Score=53.65  Aligned_cols=175  Identities=15%  Similarity=0.155  Sum_probs=115.5

Q ss_pred             CcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCC
Q 020073          106 GIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGC  185 (331)
Q Consensus       106 gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~  185 (331)
                      +|++.|. +.+  -+|=.+++.+++.+|-                    .|+.+...+|.|.|.|.-|-.+|+.+...|.
T Consensus       161 ~ip~f~D-D~~--GTa~v~la~l~~a~~~--------------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~  217 (763)
T PRK12862        161 KIPVFHD-DQH--GTAIIVAAALLNGLKL--------------------VGKDIEDVKLVASGAGAAALACLDLLVSLGV  217 (763)
T ss_pred             CCceEec-Ccc--cHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEEChhHHHHHHHHHHHHcCC
Confidence            6899997 333  3556677777876653                    3567889999999999999999999999898


Q ss_pred             ---EEEEECCCC-------C--C---CCc---cccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcC
Q 020073          186 ---NVLYNSRSK-------K--P---VPY---AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       186 ---~V~~~~~~~-------~--~---~~~---~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                         +|+.+|+..       .  .   ..+   ....+|.|+++.+|+++-+-     +.+.++++.++.|.+..++.=.|
T Consensus       218 ~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~piifals  292 (763)
T PRK12862        218 KRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRPLIFALA  292 (763)
T ss_pred             CcccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCCEEEeCC
Confidence               788888542       1  0   000   12358999999999887542     25899999999999999999888


Q ss_pred             CCCccCHHHHHHHHHh--CCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcH-----HHHHHHHHHHHHHHHHHH
Q 020073          248 RGAVIDENEMVRCLVR--GEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTS-----ECFVDLCELAVGNLEALF  319 (331)
Q Consensus       248 rg~~vd~~al~~aL~~--~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~-----~~~~~~~~~~~~nl~~~~  319 (331)
                      ....  |-.-.+|.+.  |.|.+.|-   ...|      =+..|+++-|-++-..-     .-.+.|...+++-|-.+.
T Consensus       293 NP~~--E~~p~~a~~~~~~~i~atGr---s~~p------~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~  360 (763)
T PRK12862        293 NPTP--EILPEEARAVRPDAIIATGR---SDYP------NQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAELA  360 (763)
T ss_pred             CCcc--cCCHHHHHHhcCCEEEEECC---cCCC------CcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHHHhcc
Confidence            8763  2222233333  34554441   1112      12358888887764222     123445555555555544

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=95.86  E-value=0.18  Score=50.12  Aligned_cols=89  Identities=16%  Similarity=0.177  Sum_probs=62.7

Q ss_pred             cCCCceEEEEec---ChHHHHHHHHHhhC-CCEEEEECCCCCC-----C------C--ccccCCHHhhhcCCCEEEEecc
Q 020073          158 KLGGKRVGIVGL---GNIGLQVAKRLQAF-GCNVLYNSRSKKP-----V------P--YAFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       158 ~l~g~~vgIiG~---G~IG~~~A~~l~~~-G~~V~~~~~~~~~-----~------~--~~~~~~l~ell~~aDiV~l~~P  220 (331)
                      .+.|++|++||-   +++..+++..+..+ |++|.+..+..-.     .      +  +....+++++++++|+|....-
T Consensus       238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~  317 (429)
T PRK11891        238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRI  317 (429)
T ss_pred             CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence            478999999997   59999999998876 9999888764321     0      1  2235789999999999998442


Q ss_pred             CChh----------hhhhccHHHHhc-CCCCcEEEEc
Q 020073          221 LTDQ----------TRRMINREVMLA-LGKEGIIVNV  246 (331)
Q Consensus       221 ~t~~----------t~~li~~~~l~~-mk~ga~lIn~  246 (331)
                      -.+.          ....++++.++. .|+++++.-+
T Consensus       318 q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHc  354 (429)
T PRK11891        318 QKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHP  354 (429)
T ss_pred             hhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECC
Confidence            1000          113457777777 7777776644

>PRK08223 hypothetical protein; Validated

Probab=95.85  E-value=0.038  Score=51.97  Aligned_cols=79  Identities=18%  Similarity=0.148  Sum_probs=54.2

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------CC-------------------cc--
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------VP-------------------YA--  200 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~~-------------------~~--  200 (331)
                      ..|++++|.|||+|.+|..+|+.|...|. ++..+|...-.              .+                   ..  
T Consensus        23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~  102 (287)
T PRK08223         23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAF  102 (287)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence            35899999999999999999999999898 67766643110              00                   00  


Q ss_pred             ----ccCCHHhhhcCCCEEEEeccCC-hhhhhhccHHHHh
Q 020073          201 ----FYSNVCELAANSDALIICCALT-DQTRRMINREVML  235 (331)
Q Consensus       201 ----~~~~l~ell~~aDiV~l~~P~t-~~t~~li~~~~l~  235 (331)
                          ...+.+++++++|+|+-++..- -+++.+++..-..
T Consensus       103 ~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~  142 (287)
T PRK08223        103 PEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQ  142 (287)
T ss_pred             ecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence                0134667888888888776431 2577777665443

>PLN02342 ornithine carbamoyltransferase

Probab=95.85  E-value=0.22  Score=48.17  Aligned_cols=89  Identities=13%  Similarity=0.129  Sum_probs=61.9

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCC--------------CccccCCHHhhhcCCCEEEEec---
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPV--------------PYAFYSNVCELAANSDALIICC---  219 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~--------------~~~~~~~l~ell~~aDiV~l~~---  219 (331)
                      .+.|++|++||= .++.++++..+..+|++|.+..+..-..              .+....+++++++++|+|..-.   
T Consensus       191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s  270 (348)
T PLN02342        191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWAS  270 (348)
T ss_pred             CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccc
Confidence            378999999995 5688888888999999998887643210              1223578999999999999753   


Q ss_pred             -cCChh--------hhhhccHHHHhcCCCCcEEEEc
Q 020073          220 -ALTDQ--------TRRMINREVMLALGKEGIIVNV  246 (331)
Q Consensus       220 -P~t~~--------t~~li~~~~l~~mk~ga~lIn~  246 (331)
                       -..+.        ....++++.++.+|+++++.-+
T Consensus       271 ~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHp  306 (348)
T PLN02342        271 MGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHC  306 (348)
T ss_pred             cccchhhHHHHHhccCCccCHHHHhccCCCcEEeCC
Confidence             11111        1134577777777777766655

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=95.84  E-value=0.035  Score=53.62  Aligned_cols=61  Identities=18%  Similarity=0.208  Sum_probs=42.4

Q ss_pred             ceEEEEecChHHHHHHHHHhh-CCCEEEEE-CCCCCC-------CC------------------ccccCCHHhhhcCCCE
Q 020073          162 KRVGIVGLGNIGLQVAKRLQA-FGCNVLYN-SRSKKP-------VP------------------YAFYSNVCELAANSDA  214 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~-~G~~V~~~-~~~~~~-------~~------------------~~~~~~l~ell~~aDi  214 (331)
                      .+|||+|+|+||+.+++.+.. -++++.+. ++.++.       .+                  .....++++++.++|+
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV   81 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI   81 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence            379999999999999998874 46787654 433210       00                  1112457788889999


Q ss_pred             EEEeccCC
Q 020073          215 LIICCALT  222 (331)
Q Consensus       215 V~l~~P~t  222 (331)
                      |+.|.|..
T Consensus        82 VIdaT~~~   89 (341)
T PRK04207         82 VVDATPGG   89 (341)
T ss_pred             EEECCCch
Confidence            99998754

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.83  E-value=0.086  Score=52.37  Aligned_cols=108  Identities=20%  Similarity=0.184  Sum_probs=71.2

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----------CCcccc--CCHHhhhcC-CCEEEEec--cCC
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----------VPYAFY--SNVCELAAN-SDALIICC--ALT  222 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----------~~~~~~--~~l~ell~~-aDiV~l~~--P~t  222 (331)
                      ++.|+++.|+|.|.+|.++|+.|+..|++|.++|+....          .+....  ....+++.. .|+|+..-  |.+
T Consensus         2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~   81 (447)
T PRK02472          2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT   81 (447)
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence            367899999999999999999999999999999875422          111111  122334444 89888764  222


Q ss_pred             -hh-------hhhhccHHHH-hcC-CCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073          223 -DQ-------TRRMINREVM-LAL-GKEGIIVNVGRGAVIDENEMVRCLVRGE  265 (331)
Q Consensus       223 -~~-------t~~li~~~~l-~~m-k~ga~lIn~srg~~vd~~al~~aL~~~~  265 (331)
                       +.       ...++....+ ..+ +...+-|--+.|+.....-+...|+...
T Consensus        82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g  134 (447)
T PRK02472         82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGG  134 (447)
T ss_pred             CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCC
Confidence             11       0123333333 233 4446788889999998888888887643

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=95.81  E-value=0.15  Score=48.99  Aligned_cols=88  Identities=15%  Similarity=0.144  Sum_probs=59.7

Q ss_pred             CCCceEEEEecC--hHHHHHHHHHhhCCCEEEEECCCCCC-C--------------C--ccccCCHHhhhcCCCEEEEec
Q 020073          159 LGGKRVGIVGLG--NIGLQVAKRLQAFGCNVLYNSRSKKP-V--------------P--YAFYSNVCELAANSDALIICC  219 (331)
Q Consensus       159 l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~-~--------------~--~~~~~~l~ell~~aDiV~l~~  219 (331)
                      +.|++|++||-+  ++.++++..+..+|++|.+..+..-. .              +  .....+++++++++|+|..-+
T Consensus       153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~  232 (331)
T PRK02102        153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDV  232 (331)
T ss_pred             CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence            789999999986  78999999999999999888764321 0              1  122468999999999998843


Q ss_pred             cC--C-----hh-----hhhhccHHHHh-cCCCCcEEEEc
Q 020073          220 AL--T-----DQ-----TRRMINREVML-ALGKEGIIVNV  246 (331)
Q Consensus       220 P~--t-----~~-----t~~li~~~~l~-~mk~ga~lIn~  246 (331)
                      =.  .     ++     ...-++++.++ .+|+++++.-+
T Consensus       233 w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~  272 (331)
T PRK02102        233 WVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHC  272 (331)
T ss_pred             cccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECC
Confidence            10  0     00     12234566666 35666666544

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.79  E-value=0.013  Score=46.82  Aligned_cols=79  Identities=20%  Similarity=0.214  Sum_probs=50.9

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc-------ccCCHHh-hhcCCCEEEEeccCChhhhhhc
Q 020073          164 VGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA-------FYSNVCE-LAANSDALIICCALTDQTRRMI  229 (331)
Q Consensus       164 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~-------~~~~l~e-ll~~aDiV~l~~P~t~~t~~li  229 (331)
                      +.|+|+|.+|+.+++.|+..+.+|++.++.+..      .+..       ....|.+ -+.++|.|+++.+....+..+ 
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~-   79 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLI-   79 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHH-
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHH-
Confidence            579999999999999999977799999887643      1211       1122444 368899999998865443332 


Q ss_pred             cHHHHhcCCCCcEEE
Q 020073          230 NREVMLALGKEGIIV  244 (331)
Q Consensus       230 ~~~~l~~mk~ga~lI  244 (331)
                       ...+..+-+...+|
T Consensus        80 -~~~~r~~~~~~~ii   93 (116)
T PF02254_consen   80 -ALLARELNPDIRII   93 (116)
T ss_dssp             -HHHHHHHTTTSEEE
T ss_pred             -HHHHHHHCCCCeEE
Confidence             33444444444444

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.78  E-value=0.022  Score=54.13  Aligned_cols=58  Identities=21%  Similarity=0.279  Sum_probs=44.5

Q ss_pred             eEEEEecChHHHHHHHHHhhCC--CEEEEECCCCCC-C-------Ccc--------ccCCHHhhhcCCCEEEEeccC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFG--CNVLYNSRSKKP-V-------PYA--------FYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~~-~-------~~~--------~~~~l~ell~~aDiV~l~~P~  221 (331)
                      +|+|||.|.+|..+|..+...|  .+|..+|++... .       ...        ...+. +.+++||+|+++.+.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~   77 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGA   77 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCC
Confidence            6999999999999999998888  489999987643 1       000        01233 568999999999975

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK11579 putative oxidoreductase; Provisional

Probab=95.77  E-value=0.02  Score=55.04  Aligned_cols=62  Identities=21%  Similarity=0.213  Sum_probs=44.9

Q ss_pred             ceEEEEecChHHHH-HHHHHhh-CCCEEE-EECCCCCC-----CCccccCCHHhhhc--CCCEEEEeccCCh
Q 020073          162 KRVGIVGLGNIGLQ-VAKRLQA-FGCNVL-YNSRSKKP-----VPYAFYSNVCELAA--NSDALIICCALTD  223 (331)
Q Consensus       162 ~~vgIiG~G~IG~~-~A~~l~~-~G~~V~-~~~~~~~~-----~~~~~~~~l~ell~--~aDiV~l~~P~t~  223 (331)
                      .++||||+|.||+. .+..++. -++++. +++++.+.     .....+.+++++++  +.|+|++|+|...
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~   76 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDT   76 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence            47999999999984 5666654 378876 56766433     12234679999996  4799999998653

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=95.73  E-value=0.027  Score=54.39  Aligned_cols=88  Identities=17%  Similarity=0.264  Sum_probs=56.4

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhC-CCEEEE-ECCCCCC--C----C-cc-----ccCCHHh-hhcCCCEEEEeccCChhh
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAF-GCNVLY-NSRSKKP--V----P-YA-----FYSNVCE-LAANSDALIICCALTDQT  225 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~-G~~V~~-~~~~~~~--~----~-~~-----~~~~l~e-ll~~aDiV~l~~P~t~~t  225 (331)
                      .+|+|||. |.+|+.+++.+... ++++.. .++....  .    + ..     .+.++++ ...++|+|++|+|.... 
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~-   81 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS-   81 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH-
Confidence            68999996 99999999999876 677654 4532221  0    0 11     1223333 45789999999996522 


Q ss_pred             hhhccHHHHhcCCCCcEEEEcCCCCccCH
Q 020073          226 RRMINREVMLALGKEGIIVNVGRGAVIDE  254 (331)
Q Consensus       226 ~~li~~~~l~~mk~ga~lIn~srg~~vd~  254 (331)
                      ..++ ..   ..+.|..+||.|-.--.+.
T Consensus        82 ~~~v-~~---a~~aG~~VID~S~~fR~~~  106 (343)
T PRK00436         82 MDLA-PQ---LLEAGVKVIDLSADFRLKD  106 (343)
T ss_pred             HHHH-HH---HHhCCCEEEECCcccCCCC
Confidence            2222 11   1357899999986655544

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.73  E-value=0.062  Score=53.74  Aligned_cols=107  Identities=21%  Similarity=0.211  Sum_probs=69.9

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEec--cCC-h----h
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICC--ALT-D----Q  224 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~--P~t-~----~  224 (331)
                      ++.|++|.|+|+|..|.++|+.|+..|.+|.++|.....      .+......-.+-+.++|+|+..=  |.+ +    .
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~   85 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV   85 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence            477899999999999999999999999999999976432      12211110112356789877532  211 1    1


Q ss_pred             ---hhh----hccH-HHHhc-C-----CCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073          225 ---TRR----MINR-EVMLA-L-----GKEGIIVNVGRGAVIDENEMVRCLVRG  264 (331)
Q Consensus       225 ---t~~----li~~-~~l~~-m-----k~ga~lIn~srg~~vd~~al~~aL~~~  264 (331)
                         ++.    ++++ +.+.+ +     +...+-|.-+.|+.-...-+...|+..
T Consensus        86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~  139 (460)
T PRK01390         86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA  139 (460)
T ss_pred             HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence               111    1332 22222 2     345678888999999999888888864

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.66  E-value=0.061  Score=54.21  Aligned_cols=97  Identities=11%  Similarity=0.232  Sum_probs=69.2

Q ss_pred             cCCCceEEEEec----------ChHHHHHHHHHhhCCCEEEEECCCCCC--C--Cc------------------------
Q 020073          158 KLGGKRVGIVGL----------GNIGLQVAKRLQAFGCNVLYNSRSKKP--V--PY------------------------  199 (331)
Q Consensus       158 ~l~g~~vgIiG~----------G~IG~~~A~~l~~~G~~V~~~~~~~~~--~--~~------------------------  199 (331)
                      .+.|++|+|+|+          .+-...+++.|...|.+|.+||+....  .  ..                        
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV  400 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence            588999999998          668899999999999999999987432  1  00                        


Q ss_pred             cccCCHHhhhcCCCEEEEeccCChhhhhhccHHH-HhcCCCCcEEEEcCCCCccCHHHHH
Q 020073          200 AFYSNVCELAANSDALIICCALTDQTRRMINREV-MLALGKEGIIVNVGRGAVIDENEMV  258 (331)
Q Consensus       200 ~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~-l~~mk~ga~lIn~srg~~vd~~al~  258 (331)
                      ....++.+++++||+|+++.+.. +.+. ++-+. .+.|++..+++|. |+- +|.+.+.
T Consensus       401 ~~~~~~~~a~~~aD~vvi~t~~~-ef~~-l~~~~~~~~m~~~~~viD~-rn~-l~~~~~~  456 (473)
T PLN02353        401 SVVWDAYEATKGAHGICILTEWD-EFKT-LDYQKIYDNMQKPAFVFDG-RNV-LDHEKLR  456 (473)
T ss_pred             eeeCCHHHHhcCCCEEEECCCCh-Hhcc-cCHHHHHHhccCCCEEEEC-CCC-CCHHHHH
Confidence            11235678999999999998754 3333 34333 4557766688985 544 4665553

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=95.66  E-value=0.011  Score=51.80  Aligned_cols=101  Identities=15%  Similarity=0.226  Sum_probs=59.4

Q ss_pred             ceEEEEecChHHHHHHHH--HhhCCCEEE-EECCCCCC----CC---ccccCCHHhhhc--CCCEEEEeccCChh---hh
Q 020073          162 KRVGIVGLGNIGLQVAKR--LQAFGCNVL-YNSRSKKP----VP---YAFYSNVCELAA--NSDALIICCALTDQ---TR  226 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~--l~~~G~~V~-~~~~~~~~----~~---~~~~~~l~ell~--~aDiV~l~~P~t~~---t~  226 (331)
                      -++.|||.|++|++++..  .+..||+|. ++|-.++.    .+   ....++|++.++  +.|+.++|+|...+   +.
T Consensus        85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~vad  164 (211)
T COG2344          85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEHAQEVAD  164 (211)
T ss_pred             eeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHHHHHHHHH
Confidence            369999999999999985  347899875 67776654    11   222346677676  68899999996432   11


Q ss_pred             hhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 020073          227 RMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLV  262 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~  262 (331)
                      .++.+..=.-+-=..+-+++.-+-+|..-+|-..|+
T Consensus       165 ~Lv~aGVkGIlNFtPv~l~~pe~V~V~~iDLt~eLq  200 (211)
T COG2344         165 RLVKAGVKGILNFTPVRLQVPEGVIVENIDLTAELQ  200 (211)
T ss_pred             HHHHcCCceEEeccceEecCCCCcEEEEeehHHHHH
Confidence            122111100011113445555555555555555554

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=95.58  E-value=0.048  Score=51.54  Aligned_cols=81  Identities=16%  Similarity=0.299  Sum_probs=54.8

Q ss_pred             eEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC------------CC---------------------c--c------
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP------------VP---------------------Y--A------  200 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~------------~~---------------------~--~------  200 (331)
                      +|.|||+|.+|..+|+.|...|. +++.+|...-.            ..                     .  .      
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I   80 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI   80 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence            58999999999999999999998 67666532100            00                     0  0      


Q ss_pred             -----------------ccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcC
Q 020073          201 -----------------FYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       201 -----------------~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                                       ....++++++++|+|+.++ .+-+++.+++.--...   +..+|+.+
T Consensus        81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~~---~k~~I~aa  140 (307)
T cd01486          81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAAK---NKLVINAA  140 (307)
T ss_pred             cccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHHh---CCcEEEEE
Confidence                             0012568899999999998 5778888876654433   23556653

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK08328 hypothetical protein; Provisional

Probab=95.58  E-value=0.047  Score=49.72  Aligned_cols=37  Identities=35%  Similarity=0.528  Sum_probs=32.4

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS  193 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  193 (331)
                      ..|++++|.|+|+|.+|..+|+.|...|. +++.+|..
T Consensus        23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            35889999999999999999999999998 67777743

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.57  E-value=0.025  Score=57.20  Aligned_cols=105  Identities=17%  Similarity=0.153  Sum_probs=69.9

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcccc--CCHHhhhcCCCEEEEeccCChhhhh---
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFY--SNVCELAANSDALIICCALTDQTRR---  227 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~--~~l~ell~~aDiV~l~~P~t~~t~~---  227 (331)
                      +.|+++.|+|+|.+|.+.++.|+..|++|.++|.....      .+....  ....+.+.++|+|+.+- .-+....   
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~Sp-Gi~~~~p~~~   88 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSP-GFRPTAPVLA   88 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECC-CCCCCCHHHH
Confidence            46899999999999999999999999999999965332      122111  12345567899888764 3222211   


Q ss_pred             --------hccHHHHh-cC--------CCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073          228 --------MINREVML-AL--------GKEGIIVNVGRGAVIDENEMVRCLVRG  264 (331)
Q Consensus       228 --------li~~~~l~-~m--------k~ga~lIn~srg~~vd~~al~~aL~~~  264 (331)
                              ++++-.+. +.        +...+-|--+-|+.-...-+...|++.
T Consensus        89 ~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~  142 (488)
T PRK03369         89 AAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAA  142 (488)
T ss_pred             HHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence                    22222221 11        113577888889998888888888764

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=95.57  E-value=0.11  Score=49.22  Aligned_cols=88  Identities=22%  Similarity=0.208  Sum_probs=62.1

Q ss_pred             cCCCceEEEEecC---hHHHHHHHHHhhCCCEEEEECCCCCC-----------CCc--cccCCHHhhhcCCCEEEEeccC
Q 020073          158 KLGGKRVGIVGLG---NIGLQVAKRLQAFGCNVLYNSRSKKP-----------VPY--AFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       158 ~l~g~~vgIiG~G---~IG~~~A~~l~~~G~~V~~~~~~~~~-----------~~~--~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      ++.|.+|+++|-|   ++.++++..+..+|++|.+..+..-.           .+.  ....+++++++.+|+|..-- .
T Consensus       147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~-~  225 (301)
T TIGR00670       147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTR-I  225 (301)
T ss_pred             CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECC-c
Confidence            3789999999984   99999999999999999988765421           011  23578999999999988732 1


Q ss_pred             Ch-------h-----hhhhccHHHHhcCCCCcEEEEc
Q 020073          222 TD-------Q-----TRRMINREVMLALGKEGIIVNV  246 (331)
Q Consensus       222 t~-------~-----t~~li~~~~l~~mk~ga~lIn~  246 (331)
                      ..       +     ...-++++.++..++++++.-+
T Consensus       226 ~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHc  262 (301)
T TIGR00670       226 QKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHP  262 (301)
T ss_pred             cccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECC
Confidence            10       0     0223466677777777766644

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.56  E-value=0.021  Score=53.71  Aligned_cols=64  Identities=17%  Similarity=0.197  Sum_probs=46.2

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC---C------Cc----cccC---CHHhhhcCCCEEEEeccC
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP---V------PY----AFYS---NVCELAANSDALIICCAL  221 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~---~------~~----~~~~---~l~ell~~aDiV~l~~P~  221 (331)
                      +.++++.|+|.|..|++++-.|...|+ +|.+++|+..+   .      ..    ....   ++.+.+..+|+|+.++|.
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~  204 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM  204 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence            568899999999999999999999998 78999998654   0      00    0011   123355677888888775


Q ss_pred             C
Q 020073          222 T  222 (331)
Q Consensus       222 t  222 (331)
                      .
T Consensus       205 G  205 (283)
T PRK14027        205 G  205 (283)
T ss_pred             C
Confidence            4

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=95.54  E-value=0.16  Score=49.03  Aligned_cols=61  Identities=10%  Similarity=0.064  Sum_probs=48.1

Q ss_pred             cCCCceEEEEecC--hHHHHHHHHHhhCCCEEEEECCCCCC-C--------------C--ccccCCHHhhhcCCCEEEEe
Q 020073          158 KLGGKRVGIVGLG--NIGLQVAKRLQAFGCNVLYNSRSKKP-V--------------P--YAFYSNVCELAANSDALIIC  218 (331)
Q Consensus       158 ~l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~-~--------------~--~~~~~~l~ell~~aDiV~l~  218 (331)
                      .+.|.+|++||-+  ++.++++..+..+|+++.+..+..-. .              +  .....+++++++++|+|..-
T Consensus       153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd  232 (336)
T PRK03515        153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD  232 (336)
T ss_pred             CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence            4789999999975  68999999999999999888764321 0              1  12357899999999999874

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.52  E-value=0.14  Score=48.15  Aligned_cols=108  Identities=12%  Similarity=0.172  Sum_probs=74.6

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCC--CCC-CCccccCCHHhhhcCCCEEEEeccCChhh----------hh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRS--KKP-VPYAFYSNVCELAANSDALIICCALTDQT----------RR  227 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~--~~~-~~~~~~~~l~ell~~aDiV~l~~P~t~~t----------~~  227 (331)
                      |++++|||--.=-..+++.|...|++|..+.-.  ... .+.....+.++.++++|+|++-+|.+...          +-
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~   80 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKV   80 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccccCCc
Confidence            678999999988899999999999998766432  111 33334445566799999999999966542          11


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCC
Q 020073          228 MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE  275 (331)
Q Consensus       228 li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~  275 (331)
                      -++++.+++|+++.+ +-++    ++..++-++.++..|.  ..|.++
T Consensus        81 ~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~--v~~~~~  121 (287)
T TIGR02853        81 VLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK--LIELFE  121 (287)
T ss_pred             cccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe--EEEEEe
Confidence            247889999998665 4444    4445555567777765  444433

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=95.52  E-value=0.026  Score=53.13  Aligned_cols=91  Identities=19%  Similarity=0.249  Sum_probs=68.4

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C--------------Ccccc----------CCH
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V--------------PYAFY----------SNV  205 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~--------------~~~~~----------~~l  205 (331)
                      +-...+.++.++|+|-+|-..+......|+-|..++-.+..      .              ++...          .-+
T Consensus       159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~  238 (356)
T COG3288         159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV  238 (356)
T ss_pred             cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence            34577888999999999999999999999988877644321      0              11100          124


Q ss_pred             HhhhcCCCEEEEec--cCChhhhhhccHHHHhcCCCCcEEEEcC
Q 020073          206 CELAANSDALIICC--ALTDQTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       206 ~ell~~aDiV~l~~--P~t~~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      .+..++.||||...  |..+.- .|+.++..+.||||+++|+.+
T Consensus       239 a~~~~~~DivITTAlIPGrpAP-~Lvt~~mv~sMkpGSViVDlA  281 (356)
T COG3288         239 AEQAKEVDIVITTALIPGRPAP-KLVTAEMVASMKPGSVIVDLA  281 (356)
T ss_pred             HHHhcCCCEEEEecccCCCCCc-hhhHHHHHHhcCCCcEEEEeh
Confidence            56788999999875  665553 488999999999999999985

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=95.49  E-value=0.21  Score=48.07  Aligned_cols=88  Identities=15%  Similarity=0.178  Sum_probs=60.7

Q ss_pred             CCCceEEEEecC--hHHHHHHHHHhhCCCEEEEECCCCCC---------------CC--ccccCCHHhhhcCCCEEEEec
Q 020073          159 LGGKRVGIVGLG--NIGLQVAKRLQAFGCNVLYNSRSKKP---------------VP--YAFYSNVCELAANSDALIICC  219 (331)
Q Consensus       159 l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~---------------~~--~~~~~~l~ell~~aDiV~l~~  219 (331)
                      +.|++|++||-+  ++.++.+..+..+|++|.+..+..-.               .+  .....+++++++++|+|..-.
T Consensus       153 l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~  232 (332)
T PRK04284        153 YKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDV  232 (332)
T ss_pred             cCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECC
Confidence            778999999974  88999999999999999988765211               01  223578999999999998742


Q ss_pred             cC--Ch------h-----hhhhccHHHHhcCC-CCcEEEEc
Q 020073          220 AL--TD------Q-----TRRMINREVMLALG-KEGIIVNV  246 (331)
Q Consensus       220 P~--t~------~-----t~~li~~~~l~~mk-~ga~lIn~  246 (331)
                      =.  ..      +     -...++++.++.++ +++++.-+
T Consensus       233 w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHp  273 (332)
T PRK04284        233 WVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHC  273 (332)
T ss_pred             cccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECC
Confidence            00  00      0     12234667777765 46666654

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=95.47  E-value=0.051  Score=42.39  Aligned_cols=62  Identities=23%  Similarity=0.196  Sum_probs=42.7

Q ss_pred             CceEEEEecChHHHHHHHHH-hhCCCEE-EEECCCCCC-----CCccccCCHHhhhcC--CCEEEEeccCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRL-QAFGCNV-LYNSRSKKP-----VPYAFYSNVCELAAN--SDALIICCALT  222 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l-~~~G~~V-~~~~~~~~~-----~~~~~~~~l~ell~~--aDiV~l~~P~t  222 (331)
                      ..++.|+|+|+.|++++... ...|+.+ .++|.++..     .+...+.+++++.+.  .|+-++++|..
T Consensus         3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~   73 (96)
T PF02629_consen    3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAE   73 (96)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HH
T ss_pred             CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHH
Confidence            35799999999999988544 3556654 456655554     233334577777666  99999999854

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.46  E-value=0.028  Score=50.95  Aligned_cols=68  Identities=18%  Similarity=0.183  Sum_probs=48.1

Q ss_pred             CCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CC-ccc-cCCH-HhhhcCCCEEEEecc
Q 020073          153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VP-YAF-YSNV-CELAANSDALIICCA  220 (331)
Q Consensus       153 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~-~~~-~~~l-~ell~~aDiV~l~~P  220 (331)
                      +|..-+++|++|.|||.|.+|..=++.|..+|++|+++++...+       .+ ... ..+. .+-+..+++|+.|+.
T Consensus        17 ~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATd   94 (223)
T PRK05562         17 MFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATD   94 (223)
T ss_pred             eeeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCC
Confidence            34455788999999999999999999999999999999886543       01 100 0111 234567887877764

>PLN02527 aspartate carbamoyltransferase

Probab=95.44  E-value=0.1  Score=49.67  Aligned_cols=88  Identities=19%  Similarity=0.266  Sum_probs=60.0

Q ss_pred             CCCceEEEEecC---hHHHHHHHHHhhC-CCEEEEECCCCCC-----C------Cc--cccCCHHhhhcCCCEEEEeccC
Q 020073          159 LGGKRVGIVGLG---NIGLQVAKRLQAF-GCNVLYNSRSKKP-----V------PY--AFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       159 l~g~~vgIiG~G---~IG~~~A~~l~~~-G~~V~~~~~~~~~-----~------~~--~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      +.|.+|++||-+   ++.++++..+..+ |++|.+..+..-.     .      +.  ....+++++++++|+|....-.
T Consensus       149 l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~q  228 (306)
T PLN02527        149 LDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRIQ  228 (306)
T ss_pred             cCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCcc
Confidence            779999999965   6899999998887 9999887764321     0      11  2357899999999999984311


Q ss_pred             Ch------h-h-----hhhccHHHHhcCCCCcEEEEc
Q 020073          222 TD------Q-T-----RRMINREVMLALGKEGIIVNV  246 (331)
Q Consensus       222 t~------~-t-----~~li~~~~l~~mk~ga~lIn~  246 (331)
                      .+      . .     ...++++.++..++++++.-+
T Consensus       229 ~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHc  265 (306)
T PLN02527        229 RERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHP  265 (306)
T ss_pred             hhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECC
Confidence            00      0 1     134466666666666666644

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.41  E-value=0.039  Score=53.91  Aligned_cols=37  Identities=27%  Similarity=0.323  Sum_probs=33.0

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS  193 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  193 (331)
                      ..+.+++|.|+|+|.+|..+++.|...|. ++..+|+.
T Consensus       131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35889999999999999999999999998 68888765

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.38  E-value=0.042  Score=52.41  Aligned_cols=85  Identities=19%  Similarity=0.379  Sum_probs=55.7

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC-----------CCc-----cc-cCCHHhhhcCCCEEEEeccC-
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP-----------VPY-----AF-YSNVCELAANSDALIICCAL-  221 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~-----------~~~-----~~-~~~l~ell~~aDiV~l~~P~-  221 (331)
                      .+|+|||.|.+|..+|-.+...|.  +++.+|.+.+.           ..+     .. ..+.+ .+++||+|+++.-. 
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG~~   82 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAGAR   82 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCCCC
Confidence            489999999999999999876565  78999987643           100     11 13444 58999999997632 


Q ss_pred             -Ch-hhh-hhc--cH-------HHHhcCCCCcEEEEcC
Q 020073          222 -TD-QTR-RMI--NR-------EVMLALGKEGIIVNVG  247 (331)
Q Consensus       222 -t~-~t~-~li--~~-------~~l~~mk~ga~lIn~s  247 (331)
                       .+ .|+ .++  |.       +.+....|.+++|+++
T Consensus        83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs  120 (312)
T cd05293          83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS  120 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc
Confidence             21 233 111  11       2333346789999998

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.38  E-value=0.034  Score=60.81  Aligned_cols=63  Identities=19%  Similarity=0.218  Sum_probs=44.7

Q ss_pred             CCceEEEEecChHHHHHHHHHhhC-CCE-------------EEEECCCCCC-------C-C---ccc-cCC---HHhhhc
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAF-GCN-------------VLYNSRSKKP-------V-P---YAF-YSN---VCELAA  210 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~-G~~-------------V~~~~~~~~~-------~-~---~~~-~~~---l~ell~  210 (331)
                      ..++|+|||+|.||+.+|+.|... +.+             |.+.|++.+.       . .   ... +.+   +.++++
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~  647 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS  647 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence            477999999999999999999753 333             7788876543       1 1   111 234   444457


Q ss_pred             CCCEEEEeccCC
Q 020073          211 NSDALIICCALT  222 (331)
Q Consensus       211 ~aDiV~l~~P~t  222 (331)
                      ++|+|++|+|..
T Consensus       648 ~~DaVIsalP~~  659 (1042)
T PLN02819        648 QVDVVISLLPAS  659 (1042)
T ss_pred             CCCEEEECCCch
Confidence            899999999964

>PRK07411 hypothetical protein; Validated

Probab=95.36  E-value=0.046  Score=53.73  Aligned_cols=82  Identities=20%  Similarity=0.161  Sum_probs=56.8

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------CC-----------------c--cc-
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------VP-----------------Y--AF-  201 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~~-----------------~--~~-  201 (331)
                      ..|+.++|+|||+|.+|..+|+.|...|. ++..+|...-.              .+                 .  .. 
T Consensus        34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~  113 (390)
T PRK07411         34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY  113 (390)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            35899999999999999999999999888 67777643110              00                 0  00 


Q ss_pred             -----cCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCC
Q 020073          202 -----YSNVCELAANSDALIICCALTDQTRRMINREVMLALGK  239 (331)
Q Consensus       202 -----~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~  239 (331)
                           ..+..+++.++|+|+.|+ .+.+++.+++..-...-+|
T Consensus       114 ~~~~~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~~~p  155 (390)
T PRK07411        114 ETRLSSENALDILAPYDVVVDGT-DNFPTRYLVNDACVLLNKP  155 (390)
T ss_pred             ecccCHHhHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHcCCC
Confidence                 013456788899888776 3557788887766555444

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=95.34  E-value=0.043  Score=56.70  Aligned_cols=65  Identities=18%  Similarity=0.261  Sum_probs=49.2

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCc---cccCC---HHhhhcCCCEEEEeccC
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPY---AFYSN---VCELAANSDALIICCAL  221 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~---~~~~~---l~ell~~aDiV~l~~P~  221 (331)
                      .+..+++|||||-|..|+.+++.++.+|++|++++..+..     ...   ..+.+   +.++.+++|+|+.....
T Consensus        18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~   93 (577)
T PLN02948         18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEH   93 (577)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCC
Confidence            3478899999999999999999999999999999887643     110   01233   56667889998776443

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.33  E-value=0.029  Score=54.79  Aligned_cols=78  Identities=19%  Similarity=0.280  Sum_probs=55.2

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------C----------------C---ccc-
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------V----------------P---YAF-  201 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~----------------~---~~~-  201 (331)
                      ..|.+++|.|||+|.+|..+++.|...|. ++..+|...-.              .                +   ... 
T Consensus        37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~  116 (370)
T PRK05600         37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL  116 (370)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence            45899999999999999999999999998 77777653100              0                0   000 


Q ss_pred             -----cCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073          202 -----YSNVCELAANSDALIICCALTDQTRRMINREVML  235 (331)
Q Consensus       202 -----~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~  235 (331)
                           ..++.++++++|+|+.|+- +.+++.++++.-..
T Consensus       117 ~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~  154 (370)
T PRK05600        117 RERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEI  154 (370)
T ss_pred             eeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence                 1235568888998877764 56778777765443

>PRK08265 short chain dehydrogenase; Provisional

Probab=95.32  E-value=0.043  Score=50.20  Aligned_cols=38  Identities=32%  Similarity=0.292  Sum_probs=34.1

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      +++|+++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD   41 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999995 99999999999999999999988754

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.32  E-value=0.065  Score=46.63  Aligned_cols=31  Identities=32%  Similarity=0.484  Sum_probs=27.2

Q ss_pred             eEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS  193 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  193 (331)
                      +|+|||+|.+|..+|+.|...|. ++..+|..
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D   32 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD   32 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            58999999999999999998898 58877754

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK06270 homoserine dehydrogenase; Provisional

Probab=95.31  E-value=0.085  Score=50.89  Aligned_cols=105  Identities=16%  Similarity=0.199  Sum_probs=62.3

Q ss_pred             ceEEEEecChHHHHHHHHHhhC----------CCEEEE-ECCCCC-------C----------CC-cc------ccCCHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF----------GCNVLY-NSRSKK-------P----------VP-YA------FYSNVC  206 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~----------G~~V~~-~~~~~~-------~----------~~-~~------~~~~l~  206 (331)
                      -+|+|+|+|.||+.+++.+...          +++|.+ +|++..       .          .+ ..      ...+++
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL   82 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence            3799999999999999998644          567653 454211       0          00 00      123778


Q ss_pred             hhh--cCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHhCCc
Q 020073          207 ELA--ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAV-IDENEMVRCLVRGEI  266 (331)
Q Consensus       207 ell--~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~-vd~~al~~aL~~~~i  266 (331)
                      +++  .+.|+|+.|+|....+...--.-....++.|.-+|-..-+.+ ...++|.++.++...
T Consensus        83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~  145 (341)
T PRK06270         83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV  145 (341)
T ss_pred             HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence            887  468999999986543211111112344566766665443333 245677777766654

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=95.29  E-value=0.2  Score=47.71  Aligned_cols=135  Identities=19%  Similarity=0.230  Sum_probs=82.6

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC--C-----------CC--c--cccCCHHhhhcCCCEEEEeccCChh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK--P-----------VP--Y--AFYSNVCELAANSDALIICCALTDQ  224 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~--~-----------~~--~--~~~~~l~ell~~aDiV~l~~P~t~~  224 (331)
                      ++|.|+|.|.||..++-+|...|.+|+.+.|.+.  .           .+  .  .....-.+.+..+|+|++++= +-+
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK-a~q   79 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK-AYQ   79 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEec-ccc
Confidence            4799999999999999999999988888877763  1           11  0  111233456678999999974 334


Q ss_pred             hhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCC--CCCCCCCccccCCceEEcCCCCCCc
Q 020073          225 TRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE--NEPYVPKELLELDNVVLQPHRAVFT  300 (331)
Q Consensus       225 t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~--~EP~~~~~L~~~~nvilTPH~a~~t  300 (331)
                      +...+ +......++.++++-.--| +=+++.+-+.+...++- .|+..+.  .+....-.......+.+.+..++..
T Consensus        80 ~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il-~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~  154 (307)
T COG1893          80 LEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVL-GGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD  154 (307)
T ss_pred             HHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEE-EEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence            44444 4455667788766644222 23444566666555443 2333332  2221111344567888888777665

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.26  E-value=0.025  Score=58.11  Aligned_cols=68  Identities=13%  Similarity=0.122  Sum_probs=50.2

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc-------ccCCHHhh-hcCCCEEEEeccCChhhhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA-------FYSNVCEL-AANSDALIICCALTDQTRR  227 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~-------~~~~l~el-l~~aDiV~l~~P~t~~t~~  227 (331)
                      .++.|+|+|++|+.+|+.|+..|.+|++.|.+++.      .+..       ..+.++++ ++++|.++++++.+.++..
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~  497 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE  497 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence            46899999999999999999999999999987654      1111       11123332 5789999999887766655


Q ss_pred             hc
Q 020073          228 MI  229 (331)
Q Consensus       228 li  229 (331)
                      ++
T Consensus       498 iv  499 (558)
T PRK10669        498 IV  499 (558)
T ss_pred             HH
Confidence            54

>PRK05086 malate dehydrogenase; Provisional

Probab=95.25  E-value=0.099  Score=49.82  Aligned_cols=88  Identities=15%  Similarity=0.214  Sum_probs=55.3

Q ss_pred             ceEEEEec-ChHHHHHHHHHh---hCCCEEEEECCCCCC----CC--c-c--c------cCCHHhhhcCCCEEEEeccC-
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQ---AFGCNVLYNSRSKKP----VP--Y-A--F------YSNVCELAANSDALIICCAL-  221 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~---~~G~~V~~~~~~~~~----~~--~-~--~------~~~l~ell~~aDiV~l~~P~-  221 (331)
                      ++++|||. |.||+++|..+.   ..+..+..+++++..    .+  . .  .      ..++.+.++++|+|++|+-. 
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~   80 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA   80 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence            47999999 999999998774   344578888875432    01  0 1  0      23566888999999999843 


Q ss_pred             -Chh-hh-hhc------cHHHHhcC---CCCcEEEEcCCC
Q 020073          222 -TDQ-TR-RMI------NREVMLAL---GKEGIIVNVGRG  249 (331)
Q Consensus       222 -t~~-t~-~li------~~~~l~~m---k~ga~lIn~srg  249 (331)
                       .+. ++ .++      -++..+.|   .+.+++++++-.
T Consensus        81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP  120 (312)
T PRK05086         81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP  120 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence             211 11 111      12233333   577899988643

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.25  E-value=0.05  Score=53.99  Aligned_cols=86  Identities=28%  Similarity=0.249  Sum_probs=56.9

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C--Cccc-------cCCHHh-hhcCCCEEEEeccCC
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V--PYAF-------YSNVCE-LAANSDALIICCALT  222 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~--~~~~-------~~~l~e-ll~~aDiV~l~~P~t  222 (331)
                      +..+++.|+|+|.+|+.+++.|...|.+|++++++++.      .  +...       ...|.+ -+.++|.|+++++.+
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~  308 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD  308 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence            44688999999999999999999999999999877643      0  1110       112322 367899999888765


Q ss_pred             hhhhhhccHHHHhcCCCCcEEEEc
Q 020073          223 DQTRRMINREVMLALGKEGIIVNV  246 (331)
Q Consensus       223 ~~t~~li~~~~l~~mk~ga~lIn~  246 (331)
                      ..  +++-......+.+..+++-+
T Consensus       309 ~~--n~~~~~~~~~~~~~~ii~~~  330 (453)
T PRK09496        309 EA--NILSSLLAKRLGAKKVIALV  330 (453)
T ss_pred             HH--HHHHHHHHHHhCCCeEEEEE
Confidence            33  33333333445555555543

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=95.21  E-value=0.099  Score=49.80  Aligned_cols=59  Identities=15%  Similarity=0.155  Sum_probs=47.8

Q ss_pred             CCCceEEEEec---ChHHHHHHHHHhhCCC-EEEEECCCCCC----C--CccccCCHHhhhcCCCEEEE
Q 020073          159 LGGKRVGIVGL---GNIGLQVAKRLQAFGC-NVLYNSRSKKP----V--PYAFYSNVCELAANSDALII  217 (331)
Q Consensus       159 l~g~~vgIiG~---G~IG~~~A~~l~~~G~-~V~~~~~~~~~----~--~~~~~~~l~ell~~aDiV~l  217 (331)
                      +.|.+|+++|=   +++..+++..+..+|+ +|.+..+..-.    .  ......+++++++++|+|..
T Consensus       155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~  223 (310)
T PRK13814        155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT  223 (310)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence            67899999997   6999999999999999 89888764321    1  12335789999999999986

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.17  E-value=0.07  Score=52.88  Aligned_cols=67  Identities=12%  Similarity=0.201  Sum_probs=53.8

Q ss_pred             CccCCCceEEEEec----------ChHHHHHHHHHhhCC-CEEEEECCCCCCC----C-ccccCCHHhhhcCCCEEEEec
Q 020073          156 GSKLGGKRVGIVGL----------GNIGLQVAKRLQAFG-CNVLYNSRSKKPV----P-YAFYSNVCELAANSDALIICC  219 (331)
Q Consensus       156 ~~~l~g~~vgIiG~----------G~IG~~~A~~l~~~G-~~V~~~~~~~~~~----~-~~~~~~l~ell~~aDiV~l~~  219 (331)
                      +.++.|++|+|+|+          .+-...+++.|...| .+|.+||+.....    . .....+++++++.||+|+++.
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t  394 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV  394 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence            45688999999998          568889999999996 9999999875431    1 113468999999999999998


Q ss_pred             cCC
Q 020073          220 ALT  222 (331)
Q Consensus       220 P~t  222 (331)
                      +..
T Consensus       395 ~~~  397 (415)
T PRK11064        395 DHS  397 (415)
T ss_pred             CCH
Confidence            754

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=95.16  E-value=0.25  Score=46.70  Aligned_cols=106  Identities=20%  Similarity=0.189  Sum_probs=70.8

Q ss_pred             CceEEEEec-ChHHHHHHHHHhhCCCE-EEEECCC--CCC-CCccccCCHHhhhcC--CCEEEEeccCChhhhhhccHHH
Q 020073          161 GKRVGIVGL-GNIGLQVAKRLQAFGCN-VLYNSRS--KKP-VPYAFYSNVCELAAN--SDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       161 g~~vgIiG~-G~IG~~~A~~l~~~G~~-V~~~~~~--~~~-~~~~~~~~l~ell~~--aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      +.+|.|.|. |.+|+.+.+.|..+|++ |+.+++.  ... .+...+.+++++-..  .|+.++++|.. .+...+ ++.
T Consensus         8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~-~v~~~l-~e~   85 (291)
T PRK05678          8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPPP-FAADAI-LEA   85 (291)
T ss_pred             CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCHH-HHHHHH-HHH
Confidence            457899995 88999999999998886 3356665  333 456667899999987  89999999944 444444 222


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEE
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGA  269 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga  269 (331)
                      .++=-+.++++.-+- .+-+++.|.+..+++.++-.
T Consensus        86 ~~~gvk~avI~s~Gf-~~~~~~~l~~~a~~~girvl  120 (291)
T PRK05678         86 IDAGIDLIVCITEGI-PVLDMLEVKAYLERKKTRLI  120 (291)
T ss_pred             HHCCCCEEEEECCCC-CHHHHHHHHHHHHHcCCEEE
Confidence            221123345554433 33344588888888876633

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.15  E-value=0.054  Score=52.55  Aligned_cols=37  Identities=19%  Similarity=0.316  Sum_probs=32.3

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS  193 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  193 (331)
                      ..|++++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus        24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D   61 (355)
T PRK05597         24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD   61 (355)
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45899999999999999999999999998 67777653

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=95.14  E-value=0.25  Score=45.01  Aligned_cols=119  Identities=22%  Similarity=0.232  Sum_probs=71.7

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------CC-----------------c--c---
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------VP-----------------Y--A---  200 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~~-----------------~--~---  200 (331)
                      .|++++|.|+|+|.+|..+|+.|...|. +++.+|...-.              .+                 .  .   
T Consensus         8 ~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~   87 (231)
T cd00755           8 KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE   87 (231)
T ss_pred             HHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence            4788999999999999999999998888 77777643100              00                 0  0   


Q ss_pred             -c--cCCHHhhh-cCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCH-----------------HHHHH
Q 020073          201 -F--YSNVCELA-ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDE-----------------NEMVR  259 (331)
Q Consensus       201 -~--~~~l~ell-~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~-----------------~al~~  259 (331)
                       .  ..++++++ .+.|+|+.|+-..+ .+..+++...+.  .-.++...+-|.-.|.                 ..+-.
T Consensus        88 ~~i~~~~~~~l~~~~~D~VvdaiD~~~-~k~~L~~~c~~~--~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~~~R~  164 (231)
T cd00755          88 EFLTPDNSEDLLGGDPDFVVDAIDSIR-AKVALIAYCRKR--KIPVISSMGAGGKLDPTRIRVADISKTSGDPLARKVRK  164 (231)
T ss_pred             eecCHhHHHHHhcCCCCEEEEcCCCHH-HHHHHHHHHHHh--CCCEEEEeCCcCCCCCCeEEEccEeccccCcHHHHHHH
Confidence             0  02345555 46999999875433 333333322221  2235555666654442                 34666


Q ss_pred             HHHhCCceEEEeecCCCCCC
Q 020073          260 CLVRGEIAGAGLDVFENEPY  279 (331)
Q Consensus       260 aL~~~~i~ga~lDV~~~EP~  279 (331)
                      .|++..+..-.-=||..|++
T Consensus       165 ~Lrk~~~~~~~~~v~S~E~~  184 (231)
T cd00755         165 RLRKRGIFFGVPVVYSTEPP  184 (231)
T ss_pred             HHHHcCCCCCeEEEeCCCCC
Confidence            77777775223346778863

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK06349 homoserine dehydrogenase; Provisional

Probab=95.13  E-value=0.087  Score=52.40  Aligned_cols=101  Identities=18%  Similarity=0.264  Sum_probs=60.6

Q ss_pred             ceEEEEecChHHHHHHHHHhh--------C--CCEEE-EECCCCCC------CCccccCCHHhhhc--CCCEEEEeccCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQA--------F--GCNVL-YNSRSKKP------VPYAFYSNVCELAA--NSDALIICCALT  222 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~--------~--G~~V~-~~~~~~~~------~~~~~~~~l~ell~--~aDiV~l~~P~t  222 (331)
                      -+|||+|+|.||+.+++.+..        .  +.+|. +++++...      .....+.++++++.  +.|+|+.+++..
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~   83 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI   83 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence            479999999999999988743        2  34554 45665433      11234568899985  469999988653


Q ss_pred             hhhhhhccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHhCCc
Q 020073          223 DQTRRMINREVMLALGKEGIIVNVGRGAVI-DENEMVRCLVRGEI  266 (331)
Q Consensus       223 ~~t~~li~~~~l~~mk~ga~lIn~srg~~v-d~~al~~aL~~~~i  266 (331)
                      .....++    .+.++.|.-+|...-+.+. .-+.|.++.+++..
T Consensus        84 ~~~~~~~----~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv  124 (426)
T PRK06349         84 EPARELI----LKALEAGKHVVTANKALLAVHGAELFAAAEEKGV  124 (426)
T ss_pred             hHHHHHH----HHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence            2222222    2345666655543322222 23567777766654

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=95.12  E-value=0.089  Score=49.79  Aligned_cols=83  Identities=22%  Similarity=0.348  Sum_probs=55.0

Q ss_pred             EEEEecChHHHHHHHHHhhCC--CEEEEECCCCCC-----------CCc----cc--cCCHHhhhcCCCEEEEeccCCh-
Q 020073          164 VGIVGLGNIGLQVAKRLQAFG--CNVLYNSRSKKP-----------VPY----AF--YSNVCELAANSDALIICCALTD-  223 (331)
Q Consensus       164 vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~~-----------~~~----~~--~~~l~ell~~aDiV~l~~P~t~-  223 (331)
                      |+|||.|.+|..+|-.+...|  .++..+|.....           ...    ..  ..+ .+.+++||+|+++..... 
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~   79 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK   79 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence            589999999999999998877  479999987653           010    00  122 468999999999985321 


Q ss_pred             -h---------hhhhcc--HHHHhcCCCCcEEEEcC
Q 020073          224 -Q---------TRRMIN--REVMLALGKEGIIVNVG  247 (331)
Q Consensus       224 -~---------t~~li~--~~~l~~mk~ga~lIn~s  247 (331)
                       .         +..++.  ...+....|.+++|+++
T Consensus        80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s  115 (300)
T cd00300          80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS  115 (300)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence             1         111120  12233335788999987

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.12  E-value=0.089  Score=51.31  Aligned_cols=83  Identities=23%  Similarity=0.365  Sum_probs=61.6

Q ss_pred             CCCceEEEEecC----------hHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCC
Q 020073          159 LGGKRVGIVGLG----------NIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       159 l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      |.||++||+|+-          +-...++++|+..|.+|.+||+....      .+.....++.+++++||+++++....
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew~  387 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEWD  387 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccHH
Confidence            899999999974          56788999999999999999987544      12455679999999999999986533


Q ss_pred             hhhhhhccHHHHhcCCCCcEEEE
Q 020073          223 DQTRRMINREVMLALGKEGIIVN  245 (331)
Q Consensus       223 ~~t~~li~~~~l~~mk~ga~lIn  245 (331)
                       +.+. ++-+.+ .|| +.++++
T Consensus       388 -ef~~-~d~~~~-~m~-~~~v~D  406 (414)
T COG1004         388 -EFRD-LDFEKL-LMK-TPVVID  406 (414)
T ss_pred             -HHhc-cChhhh-hcc-CCEEEe
Confidence             3333 233344 565 455555

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=95.10  E-value=0.75  Score=45.29  Aligned_cols=178  Identities=19%  Similarity=0.203  Sum_probs=114.0

Q ss_pred             CCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCC
Q 020073          105 RGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFG  184 (331)
Q Consensus       105 ~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G  184 (331)
                      ..|+|.|..- +  -+|-.+++.+|+.+|-                    .|+.|+..+|.+.|.|.-|-++++.+.+.|
T Consensus       166 ~~IPvFhDDq-q--GTaiv~lA~llnalk~--------------------~gk~l~d~kiv~~GAGAAgiaia~~l~~~g  222 (432)
T COG0281         166 MNIPVFHDDQ-Q--GTAIVTLAALLNALKL--------------------TGKKLKDQKIVINGAGAAGIAIADLLVAAG  222 (432)
T ss_pred             CCCCcccccc-c--HHHHHHHHHHHHHHHH--------------------hCCCccceEEEEeCCcHHHHHHHHHHHHhC
Confidence            3577777633 2  3566677777775553                    467899999999999999999999999999


Q ss_pred             C---EEEEECCCCCC----CC-----ccc---------cCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEE
Q 020073          185 C---NVLYNSRSKKP----VP-----YAF---------YSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGII  243 (331)
Q Consensus       185 ~---~V~~~~~~~~~----~~-----~~~---------~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~l  243 (331)
                      +   +|+.+|+..--    ..     ..+         ... ++.+..+|+++-+   +  ..+.+.++.++.|.+.+++
T Consensus       223 ~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~---S--~~G~~t~e~V~~Ma~~PiI  296 (432)
T COG0281         223 VKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGV---S--GVGAFTEEMVKEMAKHPII  296 (432)
T ss_pred             CCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEc---C--CCCCcCHHHHHHhccCCEE
Confidence            8   58888876321    00     000         011 4578899987765   2  2289999999999999998


Q ss_pred             EEcCCCCc-cCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHH-----HHHHHHHHHHHHHHH
Q 020073          244 VNVGRGAV-IDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSE-----CFVDLCELAVGNLEA  317 (331)
Q Consensus       244 In~srg~~-vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~-----~~~~~~~~~~~nl~~  317 (331)
                      .=.|-... +..++..++=....|.+-|      -|..|.   +.-|+++-|.++-..-.     --+.|...+++-|..
T Consensus       297 falaNP~pEi~Pe~a~~~~~~aaivaTG------rsd~Pn---QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~  367 (432)
T COG0281         297 FALANPTPEITPEDAKEWGDGAAIVATG------RSDYPN---QVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIAD  367 (432)
T ss_pred             eecCCCCccCCHHHHhhcCCCCEEEEeC------CCCCcc---cccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHh
Confidence            87776552 1222222211111333222      221111   66799999998754332     234566666666666


Q ss_pred             HHc
Q 020073          318 LFS  320 (331)
Q Consensus       318 ~~~  320 (331)
                      +..
T Consensus       368 ~~~  370 (432)
T COG0281         368 LAR  370 (432)
T ss_pred             hcc
Confidence            654

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.06  E-value=0.15  Score=45.94  Aligned_cols=86  Identities=26%  Similarity=0.337  Sum_probs=54.2

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc---cc--CCHHhh-----hcCCCEEEEeccCCh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA---FY--SNVCEL-----AANSDALIICCALTD  223 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~---~~--~~l~el-----l~~aDiV~l~~P~t~  223 (331)
                      .|.++.|+|.|.+|+.+++.++..|.+|++.+++...      .+..   ..  .+..+.     -...|+++.+++...
T Consensus       134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~  213 (271)
T cd05188         134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPE  213 (271)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHH
Confidence            5789999999999999999999999999988876432      0100   00  111111     234677776654321


Q ss_pred             hhhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073          224 QTRRMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       224 ~t~~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                      .     -...++.|+++..+++.+...
T Consensus       214 ~-----~~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         214 T-----LAQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             H-----HHHHHHhcccCCEEEEEccCC
Confidence            1     133455667777777766543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=95.06  E-value=0.019  Score=46.22  Aligned_cols=92  Identities=22%  Similarity=0.304  Sum_probs=56.7

Q ss_pred             ecChHHHHHHHHHhhC----CCEEE-EECCC--CC-C-----CCccccCCHHhhhc--CCCEEEEeccCChhhhhhccHH
Q 020073          168 GLGNIGLQVAKRLQAF----GCNVL-YNSRS--KK-P-----VPYAFYSNVCELAA--NSDALIICCALTDQTRRMINRE  232 (331)
Q Consensus       168 G~G~IG~~~A~~l~~~----G~~V~-~~~~~--~~-~-----~~~~~~~~l~ell~--~aDiV~l~~P~t~~t~~li~~~  232 (331)
                      |+|.||+.+++.+...    +++|. +++++  .. .     .......++++++.  ..|+|+=|.+..+.+.     -
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~-----~   75 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAE-----Y   75 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHH-----H
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHH-----H
Confidence            8999999999999864    67765 45665  11 1     12234578999988  9999999965433332     2


Q ss_pred             HHhcCCCCcEEEEcCCCCcc---CHHHHHHHHHhC
Q 020073          233 VMLALGKEGIIVNVGRGAVI---DENEMVRCLVRG  264 (331)
Q Consensus       233 ~l~~mk~ga~lIn~srg~~v---d~~al~~aL~~~  264 (331)
                      ....++.|.-+|-.+-|.+.   ..+.|.++.+++
T Consensus        76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~  110 (117)
T PF03447_consen   76 YEKALERGKHVVTANKGALADEALYEELREAARKN  110 (117)
T ss_dssp             HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHc
Confidence            23446788899999888888   233344444443

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=95.01  E-value=0.13  Score=47.90  Aligned_cols=60  Identities=20%  Similarity=0.267  Sum_probs=43.1

Q ss_pred             ceEEEEe-cChHHHHHHHHHhh-CCCEEEE-ECCCCCC--------------CCccccCCHHhhhcCCCEEEEeccC
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQA-FGCNVLY-NSRSKKP--------------VPYAFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~-~G~~V~~-~~~~~~~--------------~~~~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      .+|+|+| +|.||+.+++.+.. -++++.+ +++....              .+...+.+++++...+|+|+.+.|.
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p   78 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTP   78 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCCh
Confidence            3799999 69999999999875 5788764 6643211              1123346788886679999999753

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=95.00  E-value=0.048  Score=52.54  Aligned_cols=55  Identities=25%  Similarity=0.355  Sum_probs=42.3

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC-----Cc---cccCC---HHhhhcCCCEEEE
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV-----PY---AFYSN---VCELAANSDALII  217 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~---~~~~~---l~ell~~aDiV~l  217 (331)
                      ||||||.|..|+.+++.++.+|++|++++.++...     ..   ..+.+   +.++++.+|+|..
T Consensus         1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~   66 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF   66 (352)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence            59999999999999999999999999999876441     10   01223   6677888898764

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=94.98  E-value=0.071  Score=52.43  Aligned_cols=79  Identities=25%  Similarity=0.241  Sum_probs=53.8

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------CC-----------------c--cc-
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------VP-----------------Y--AF-  201 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~~-----------------~--~~-  201 (331)
                      ..|++++|.|||+|.+|..+|+.|...|. ++..+|...-.              .+                 .  .. 
T Consensus        38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~  117 (392)
T PRK07878         38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH  117 (392)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence            35889999999999999999999998888 67777643210              00                 0  00 


Q ss_pred             -----cCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhc
Q 020073          202 -----YSNVCELAANSDALIICCALTDQTRRMINREVMLA  236 (331)
Q Consensus       202 -----~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~  236 (331)
                           ..+..++++++|+|+.|+ .+.+++.++++.-...
T Consensus       118 ~~~i~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~  156 (392)
T PRK07878        118 EFRLDPSNAVELFSQYDLILDGT-DNFATRYLVNDAAVLA  156 (392)
T ss_pred             eccCChhHHHHHHhcCCEEEECC-CCHHHHHHHHHHHHHc
Confidence                 012456778888887765 4556777776655443

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=94.98  E-value=0.091  Score=50.80  Aligned_cols=83  Identities=17%  Similarity=0.208  Sum_probs=51.9

Q ss_pred             CCceEEEEe-cChHHHHHHHHHhhCCC---EEEEE--CCCCCC-C---Cc-cccCCHH-hhhcCCCEEEEeccCChhhhh
Q 020073          160 GGKRVGIVG-LGNIGLQVAKRLQAFGC---NVLYN--SRSKKP-V---PY-AFYSNVC-ELAANSDALIICCALTDQTRR  227 (331)
Q Consensus       160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~---~V~~~--~~~~~~-~---~~-~~~~~l~-ell~~aDiV~l~~P~t~~t~~  227 (331)
                      ...+|+|+| .|.+|+.+.+.|...++   ++.+.  .++..+ .   +. ....+++ +.+.++|+|++++|.. .+..
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~~   84 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISKK   84 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHHH
Confidence            346899999 79999999999987555   44333  233222 1   10 1112222 4568899999999865 3333


Q ss_pred             hccHHHHhcCCCCcEEEEcC
Q 020073          228 MINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       228 li~~~~l~~mk~ga~lIn~s  247 (331)
                      +.. +.   .+.|+.+||.|
T Consensus        85 ~~~-~~---~~~g~~VIDlS  100 (344)
T PLN02383         85 FGP-IA---VDKGAVVVDNS  100 (344)
T ss_pred             HHH-HH---HhCCCEEEECC
Confidence            332 11   25688999988

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.96  E-value=0.062  Score=47.99  Aligned_cols=38  Identities=37%  Similarity=0.547  Sum_probs=33.6

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      +++|+++.|.|. |.||+.+++.+...|++|++.+|+..
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~   40 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN   40 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            367899999995 88999999999999999999988654

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.95  E-value=0.065  Score=54.25  Aligned_cols=108  Identities=17%  Similarity=0.156  Sum_probs=70.9

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--------C--Ccccc--CCHHhhhcCCCEEEEe--ccCC--
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--------V--PYAFY--SNVCELAANSDALIIC--CALT--  222 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--------~--~~~~~--~~l~ell~~aDiV~l~--~P~t--  222 (331)
                      +.++++.|+|+|..|.++|+.|+..|.+|.++|.....        .  +....  ....+.+.++|+|+..  +|.+  
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~   84 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEA   84 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCccc
Confidence            56889999999999999999999999999999965422        0  11111  1123456689999886  3432  


Q ss_pred             ---hhh-------hhhccH-HHHhc-C--------CCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 020073          223 ---DQT-------RRMINR-EVMLA-L--------GKEGIIVNVGRGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       223 ---~~t-------~~li~~-~~l~~-m--------k~ga~lIn~srg~~vd~~al~~aL~~~~i  266 (331)
                         +..       ..+++. +.+.. +        ++..+-|--+-|+.-...-+...|++...
T Consensus        85 ~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~  148 (498)
T PRK02006         85 ALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGK  148 (498)
T ss_pred             ccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence               211       122322 22211 2        22467788888999888888888876543

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=94.90  E-value=0.068  Score=51.41  Aligned_cols=83  Identities=10%  Similarity=0.177  Sum_probs=52.2

Q ss_pred             CceEEEEe-cChHHHHHHHHHhhCCC---EEEEECCCCCC---C---Cc-cccCCHH-hhhcCCCEEEEeccCChhhhhh
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQAFGC---NVLYNSRSKKP---V---PY-AFYSNVC-ELAANSDALIICCALTDQTRRM  228 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~~~G~---~V~~~~~~~~~---~---~~-~~~~~l~-ell~~aDiV~l~~P~t~~t~~l  228 (331)
                      +++|+|+| .|.+|+.+.+.|...|+   ++.+..+....   .   +. ....+++ ..+.++|+|++|+|.. .++.+
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~   79 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKY   79 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHH
Confidence            46899999 79999999999998655   44555433222   1   10 1112222 3457899999999854 33333


Q ss_pred             ccHHHHhcCCCCcEEEEcCC
Q 020073          229 INREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       229 i~~~~l~~mk~ga~lIn~sr  248 (331)
                      . ...   ++.|+++|+.|.
T Consensus        80 ~-~~~---~~~G~~VIDlS~   95 (334)
T PRK14874         80 A-PKA---AAAGAVVIDNSS   95 (334)
T ss_pred             H-HHH---HhCCCEEEECCc
Confidence            3 222   357889998874

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=94.90  E-value=0.12  Score=45.84  Aligned_cols=37  Identities=24%  Similarity=0.412  Sum_probs=32.6

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS  193 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  193 (331)
                      +.|.+++|.|+|+|.+|.++++.|...|. ++..+|..
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            45899999999999999999999999998 57777654

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.88  E-value=0.04  Score=57.18  Aligned_cols=85  Identities=19%  Similarity=0.237  Sum_probs=58.2

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc-------ccCCHHhh-hcCCCEEEEeccCChhhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA-------FYSNVCEL-AANSDALIICCALTDQTR  226 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~-------~~~~l~el-l~~aDiV~l~~P~t~~t~  226 (331)
                      ..++.|+|+|++|+.+++.|...|.++++.|.+++.      .+..       ..+.|+++ +.+||.++++++....+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~  479 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM  479 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence            357999999999999999999999999999987654      1111       11123333 678999999998776655


Q ss_pred             hhccHHHHhcCCCCcEEEEcC
Q 020073          227 RMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~s  247 (331)
                      .++.  ...++.|...+|--+
T Consensus       480 ~i~~--~~r~~~p~~~IiaRa  498 (601)
T PRK03659        480 KIVE--LCQQHFPHLHILARA  498 (601)
T ss_pred             HHHH--HHHHHCCCCeEEEEe
Confidence            5442  233444555555433

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.86  E-value=0.083  Score=52.91  Aligned_cols=107  Identities=19%  Similarity=0.275  Sum_probs=72.4

Q ss_pred             CCCceEEEEecChHHHH-HHHHHhhCCCEEEEECCCCCC-------CCcccc-CCHHhhhcCCCEEEEec--cC-Chhhh
Q 020073          159 LGGKRVGIVGLGNIGLQ-VAKRLQAFGCNVLYNSRSKKP-------VPYAFY-SNVCELAANSDALIICC--AL-TDQTR  226 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~-~A~~l~~~G~~V~~~~~~~~~-------~~~~~~-~~l~ell~~aDiV~l~~--P~-t~~t~  226 (331)
                      .+++++.|+|+|..|.+ +|+.|+..|.+|.++|....+       .+.... ..-.+.+..+|+|+..-  |. .+...
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~   84 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV   84 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence            56789999999999999 799999999999999976542       122111 11234556899888763  22 22221


Q ss_pred             -------hhccHHHH-hcC-C-CCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073          227 -------RMINREVM-LAL-G-KEGIIVNVGRGAVIDENEMVRCLVRGE  265 (331)
Q Consensus       227 -------~li~~~~l-~~m-k-~ga~lIn~srg~~vd~~al~~aL~~~~  265 (331)
                             .+++.-.+ .++ + ...+-|.-+.|+.-...-+...|+...
T Consensus        85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence                   23444333 333 2 346888889999999988888887654

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=94.81  E-value=0.18  Score=50.20  Aligned_cols=94  Identities=18%  Similarity=0.198  Sum_probs=63.7

Q ss_pred             CccCCCceEEEEec----------ChHHHHHHHHHhhCCCEEEEECCCCCCCCc-cc--cCCHHh-hhcCCCEEEEeccC
Q 020073          156 GSKLGGKRVGIVGL----------GNIGLQVAKRLQAFGCNVLYNSRSKKPVPY-AF--YSNVCE-LAANSDALIICCAL  221 (331)
Q Consensus       156 ~~~l~g~~vgIiG~----------G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~-~~--~~~l~e-ll~~aDiV~l~~P~  221 (331)
                      +..+.|++|+|+|+          .+-+..+++.|...|.+|.+||+....... ..  ...+++ .++.||.|++++..
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~h  388 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVSEVKSSHYDAIIVAVGH  388 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccchhhhhcCCCEEEEccCC
Confidence            45689999999998          578899999999999999999997432110 01  111223 46789999999865


Q ss_pred             ChhhhhhccHHHHh-cCCCCcEEEEcCCCCcc
Q 020073          222 TDQTRRMINREVML-ALGKEGIIVNVGRGAVI  252 (331)
Q Consensus       222 t~~t~~li~~~~l~-~mk~ga~lIn~srg~~v  252 (331)
                      . +.+. ++.+.+. .||...++|+ +|+-+-
T Consensus       389 ~-~f~~-~~~~~~~~~~~~~~~iiD-~r~~~~  417 (425)
T PRK15182        389 Q-QFKQ-MGSEDIRGFGKDKHVLYD-LKYVLP  417 (425)
T ss_pred             H-Hhhc-CCHHHHHHhcCCCCEEEE-CCCCCC
Confidence            4 3333 4444444 4554568888 466653

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.81  E-value=0.058  Score=54.30  Aligned_cols=108  Identities=15%  Similarity=0.152  Sum_probs=71.5

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccccC--CHHhhhcCCCEEEEec--c-CChhh
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAFYS--NVCELAANSDALIICC--A-LTDQT  225 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~~~--~l~ell~~aDiV~l~~--P-~t~~t  225 (331)
                      .+.++++.|+|+|..|.++|+.|...|.+|.++|+....       .+.....  .-.+.+.++|+|+..-  | ..+..
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~   91 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL   91 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence            477899999999999999999999999999999975432       1222111  1234456789888762  2 22221


Q ss_pred             -------hhhccHHHHhc-------C--CCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073          226 -------RRMINREVMLA-------L--GKEGIIVNVGRGAVIDENEMVRCLVRGE  265 (331)
Q Consensus       226 -------~~li~~~~l~~-------m--k~ga~lIn~srg~~vd~~al~~aL~~~~  265 (331)
                             ..++++-.+..       +  +...+-|--+-|+.....-+...|+...
T Consensus        92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g  147 (473)
T PRK00141         92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG  147 (473)
T ss_pred             HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence                   12233333321       1  2236778888899999988888888644

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=94.78  E-value=0.086  Score=50.34  Aligned_cols=84  Identities=20%  Similarity=0.319  Sum_probs=56.3

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC------CCccc-----cCCHHhhhc---CCCEEEEeccCChh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP------VPYAF-----YSNVCELAA---NSDALIICCALTDQ  224 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~------~~~~~-----~~~l~ell~---~aDiV~l~~P~t~~  224 (331)
                      .|++|.|+|.|.+|...++.++..|. +|++.++++++      .+...     ..++.+...   ..|+|+-+.... .
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~-~  247 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP-S  247 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCH-H
Confidence            58899999999999999999999999 58888876543      12111     112333332   268888775422 1


Q ss_pred             hhhhccHHHHhcCCCCcEEEEcCC
Q 020073          225 TRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       225 t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      +   + ...++.++++..++.++.
T Consensus       248 ~---~-~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        248 S---I-NTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             H---H-HHHHHHhhcCCEEEEEcc
Confidence            1   1 335566888888888765

>PLN02602 lactate dehydrogenase

Probab=94.76  E-value=0.082  Score=51.23  Aligned_cols=85  Identities=18%  Similarity=0.333  Sum_probs=55.4

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC-----------CC---cccc---CCHHhhhcCCCEEEEeccC-
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP-----------VP---YAFY---SNVCELAANSDALIICCAL-  221 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~-----------~~---~~~~---~~l~ell~~aDiV~l~~P~-  221 (331)
                      ++|+|||.|.+|..+|-.+...|.  ++..+|...+.           ..   ....   .+. +.+++||+|+++.-. 
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~  116 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR  116 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence            699999999999999999886665  78899986643           00   0011   133 458999999998632 


Q ss_pred             -Ch-hhh-hhc--cH-------HHHhcCCCCcEEEEcC
Q 020073          222 -TD-QTR-RMI--NR-------EVMLALGKEGIIVNVG  247 (331)
Q Consensus       222 -t~-~t~-~li--~~-------~~l~~mk~ga~lIn~s  247 (331)
                       .+ +|+ .++  |.       ..+....|.+++|+++
T Consensus       117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt  154 (350)
T PLN02602        117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS  154 (350)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence             11 222 111  11       1233346788999987

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.76  E-value=0.071  Score=53.60  Aligned_cols=107  Identities=14%  Similarity=0.110  Sum_probs=71.1

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--C-------Cccc--cCCHHhhhcCCCEEEEec--cC-Chh
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--V-------PYAF--YSNVCELAANSDALIICC--AL-TDQ  224 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--~-------~~~~--~~~l~ell~~aDiV~l~~--P~-t~~  224 (331)
                      +.|++++|+|+|.-|.+.|+.|...|++|+++|.....  .       ....  ...-.+.+.++|+|+..-  |. .+.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~   85 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE   85 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence            56899999999999999999999999999999854321  0       0000  111234567899888763  22 221


Q ss_pred             h-------hhhccHHHH--hc-CC-----CCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073          225 T-------RRMINREVM--LA-LG-----KEGIIVNVGRGAVIDENEMVRCLVRGE  265 (331)
Q Consensus       225 t-------~~li~~~~l--~~-mk-----~ga~lIn~srg~~vd~~al~~aL~~~~  265 (331)
                      .       ..++++-.+  .. ++     ...+-|--+-|+.-...-+...|+...
T Consensus        86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g  141 (468)
T PRK04690         86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAG  141 (468)
T ss_pred             HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcC
Confidence            1       124544443  32 32     246888888999988888888887543

>PLN00106 malate dehydrogenase

Probab=94.73  E-value=0.091  Score=50.36  Aligned_cols=91  Identities=14%  Similarity=0.211  Sum_probs=58.6

Q ss_pred             CCceEEEEec-ChHHHHHHHHHhhCCC--EEEEECCCCCC---CC-------c--c---ccCCHHhhhcCCCEEEEeccC
Q 020073          160 GGKRVGIVGL-GNIGLQVAKRLQAFGC--NVLYNSRSKKP---VP-------Y--A---FYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       160 ~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~~~---~~-------~--~---~~~~l~ell~~aDiV~l~~P~  221 (331)
                      ..++|+|||. |.+|..+|..|...+.  ++..+|.....   .+       .  .   ...++.+.+++||+|+++.-.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~   96 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV   96 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence            4569999999 9999999999985444  78888876522   11       0  1   123457899999999998732


Q ss_pred             --Ch-hhhh-hc--c----HH---HHhcCCCCcEEEEcCCCC
Q 020073          222 --TD-QTRR-MI--N----RE---VMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       222 --t~-~t~~-li--~----~~---~l~~mk~ga~lIn~srg~  250 (331)
                        .+ .++- ++  |    ++   .+....+.+++|+++---
T Consensus        97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv  138 (323)
T PLN00106         97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV  138 (323)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence              21 1111 11  1    11   223335788999987544

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=94.67  E-value=0.54  Score=44.35  Aligned_cols=88  Identities=16%  Similarity=0.225  Sum_probs=65.5

Q ss_pred             CCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC---------------CC--ccccCCHHhhhcCCCEEEEecc
Q 020073          159 LGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP---------------VP--YAFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       159 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~---------------~~--~~~~~~l~ell~~aDiV~l~~P  220 (331)
                      ++|+|+..+| ..+++.++......+||+|.+..+..-.               .+  .....+.+++++.+|+|..=+.
T Consensus       151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW  230 (310)
T COG0078         151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW  230 (310)
T ss_pred             ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence            8999999999 5689999999999999999887664321               01  2235689999999999987654


Q ss_pred             CC--hhhh-----------hhccHHHHhcCCCCcEEEEc
Q 020073          221 LT--DQTR-----------RMINREVMLALGKEGIIVNV  246 (331)
Q Consensus       221 ~t--~~t~-----------~li~~~~l~~mk~ga~lIn~  246 (331)
                      ..  .+.+           .-+|++.++.-+++++|.-|
T Consensus       231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC  269 (310)
T COG0078         231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC  269 (310)
T ss_pred             ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence            32  2221           45678888888888888776

>PRK07877 hypothetical protein; Provisional

Probab=94.66  E-value=0.12  Score=54.51  Aligned_cols=77  Identities=21%  Similarity=0.315  Sum_probs=56.1

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCC--EEEEECCCC--------C--C---CC-------------------cc---
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSK--------K--P---VP-------------------YA---  200 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~--------~--~---~~-------------------~~---  200 (331)
                      .|++++|+|+|+| +|..+|..|...|.  +++.+|...        .  .   .+                   ..   
T Consensus       104 ~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~  182 (722)
T PRK07877        104 RLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT  182 (722)
T ss_pred             HHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence            5899999999999 99999999998884  676665321        0  0   00                   00   


Q ss_pred             ---ccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhc
Q 020073          201 ---FYSNVCELAANSDALIICCALTDQTRRMINREVMLA  236 (331)
Q Consensus       201 ---~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~  236 (331)
                         ...++++++.++|+|+-|+- +-+++.++++.-..+
T Consensus       183 ~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~  220 (722)
T PRK07877        183 DGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR  220 (722)
T ss_pred             ccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence               01357889999999999885 568888898766654

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=94.65  E-value=0.082  Score=49.84  Aligned_cols=83  Identities=20%  Similarity=0.164  Sum_probs=51.1

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCE-EEEECCCCCCC----CccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSKKPV----PYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~~~~----~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      .|+++.|+|.|.||...++.++.+|++ |.+.++...+.    .......-++.-...|+|+-+.... .   .+ ...+
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~-~---~~-~~~~  218 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDP-S---LI-DTLV  218 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCH-H---HH-HHHH
Confidence            467899999999999999999999997 45566543321    1111111111123468777765422 1   11 3346


Q ss_pred             hcCCCCcEEEEcC
Q 020073          235 LALGKEGIIVNVG  247 (331)
Q Consensus       235 ~~mk~ga~lIn~s  247 (331)
                      +.++++..++.++
T Consensus       219 ~~l~~~G~iv~~G  231 (308)
T TIGR01202       219 RRLAKGGEIVLAG  231 (308)
T ss_pred             HhhhcCcEEEEEe
Confidence            6678888777765

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=94.65  E-value=0.063  Score=51.01  Aligned_cols=64  Identities=28%  Similarity=0.329  Sum_probs=46.9

Q ss_pred             CceEEEEecChHHH-HHHHHHhhCC--CEE-EEECCCCCC-------CCc-cccCCHHhhhcC--CCEEEEeccCChh
Q 020073          161 GKRVGIVGLGNIGL-QVAKRLQAFG--CNV-LYNSRSKKP-------VPY-AFYSNVCELAAN--SDALIICCALTDQ  224 (331)
Q Consensus       161 g~~vgIiG~G~IG~-~~A~~l~~~G--~~V-~~~~~~~~~-------~~~-~~~~~l~ell~~--aDiV~l~~P~t~~  224 (331)
                      -.++||||+|.+++ ..+..++..+  +.+ .++++++..       .+. ..+.+++++++.  -|+|++|+|..-.
T Consensus         3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H   80 (342)
T COG0673           3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH   80 (342)
T ss_pred             eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh
Confidence            35899999997775 5888888766  454 456887654       222 356799999987  4899999996644

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=94.62  E-value=0.12  Score=49.03  Aligned_cols=92  Identities=15%  Similarity=0.125  Sum_probs=58.1

Q ss_pred             CceEEEEecChHHHHHHHHHhh-CCCEEE-EECCCCCC--------CCccc-cCCHHhhhc-----CCCEEEEeccCChh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQA-FGCNVL-YNSRSKKP--------VPYAF-YSNVCELAA-----NSDALIICCALTDQ  224 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~-~G~~V~-~~~~~~~~--------~~~~~-~~~l~ell~-----~aDiV~l~~P~t~~  224 (331)
                      ..++||||.|.||+..+..+.. -++++. +++++++.        .+... +.++++++.     +.|+|+.++|....
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H   83 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH   83 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence            4579999999999997776654 466765 45655432        23332 467888884     58889999875422


Q ss_pred             hhhhccHHHHhcCCCCcEEEEcC---CCCc----cCHHHH
Q 020073          225 TRRMINREVMLALGKEGIIVNVG---RGAV----IDENEM  257 (331)
Q Consensus       225 t~~li~~~~l~~mk~ga~lIn~s---rg~~----vd~~al  257 (331)
                      -+.     .....+.|..+|+-+   +|.+    |+.+++
T Consensus        84 ~e~-----a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~  118 (302)
T PRK08300         84 VRH-----AAKLREAGIRAIDLTPAAIGPYCVPAVNLDEH  118 (302)
T ss_pred             HHH-----HHHHHHcCCeEEECCccccCCcccCcCCHHHH
Confidence            111     112246788888776   3444    455555

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=94.62  E-value=0.041  Score=49.45  Aligned_cols=74  Identities=18%  Similarity=0.209  Sum_probs=52.8

Q ss_pred             EEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC--------CCc-------cccCCHHhhhcCCCEEEEeccCC-----
Q 020073          164 VGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP--------VPY-------AFYSNVCELAANSDALIICCALT-----  222 (331)
Q Consensus       164 vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~--------~~~-------~~~~~l~ell~~aDiV~l~~P~t-----  222 (331)
                      |.|+|. |.+|+.+++.|...|++|.+..|....        .+.       ...++|.++++.+|.|++++|..     
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~   80 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSHPSEL   80 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHH
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcchhhhh
Confidence            678994 999999999999999999988886532        111       11246788999999999999843     


Q ss_pred             hhhhhhccHHHHhcC
Q 020073          223 DQTRRMINREVMLAL  237 (331)
Q Consensus       223 ~~t~~li~~~~l~~m  237 (331)
                      .....++++..=+..
T Consensus        81 ~~~~~li~Aa~~agV   95 (233)
T PF05368_consen   81 EQQKNLIDAAKAAGV   95 (233)
T ss_dssp             HHHHHHHHHHHHHT-
T ss_pred             hhhhhHHHhhhcccc
Confidence            134556655544333

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=94.59  E-value=0.077  Score=46.59  Aligned_cols=60  Identities=20%  Similarity=0.215  Sum_probs=47.8

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC---Cc--------cccCCHHhhhcCCCEEEEeccC
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV---PY--------AFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~---~~--------~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      ++|+||| .|.+|+.+++-+...|.+|+..-|++.+.   ..        ....++.+.+..-|+|+.+.-.
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~   72 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA   72 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence            4799999 69999999999999999999998887651   11        1123556789999999998743

>cd08230 glucose_DH Glucose dehydrogenase

Probab=94.57  E-value=0.095  Score=50.27  Aligned_cols=84  Identities=24%  Similarity=0.354  Sum_probs=55.1

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCC---CC------CCcccc----CCHH--hhhcCCCEEEEeccCChh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK---KP------VPYAFY----SNVC--ELAANSDALIICCALTDQ  224 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~---~~------~~~~~~----~~l~--ell~~aDiV~l~~P~t~~  224 (331)
                      .|.++.|+|.|.+|...++.++..|.+|++++++.   .+      .+....    .++.  ......|+|+-++.... 
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-  250 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP-  250 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH-
Confidence            57899999999999999999999999999988742   22      111111    1111  12235788888764221 


Q ss_pred             hhhhccHHHHhcCCCCcEEEEcCC
Q 020073          225 TRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       225 t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                         .+ .+.++.++++..++.++.
T Consensus       251 ---~~-~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         251 ---LA-FEALPALAPNGVVILFGV  270 (355)
T ss_pred             ---HH-HHHHHHccCCcEEEEEec
Confidence               22 345677888887777654

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=94.57  E-value=0.04  Score=51.49  Aligned_cols=62  Identities=19%  Similarity=0.225  Sum_probs=42.9

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCCC-Cc--cccCCHH-hh-hcCCCEEEEeccCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKPV-PY--AFYSNVC-EL-AANSDALIICCALT  222 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~-~~--~~~~~l~-el-l~~aDiV~l~~P~t  222 (331)
                      ++++.|+|.|..+++++..|...|+ +|.+++|+.++. ..  ....+.. ++ ...+|+|+.|+|..
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~~~~~~dlvINaTp~G  189 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDLGGIEADILVNVTPIG  189 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhcccccCCEEEECCccc
Confidence            4689999999999999999999998 599999987541 00  0001111 11 24578888887754

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=94.56  E-value=0.12  Score=49.39  Aligned_cols=77  Identities=22%  Similarity=0.307  Sum_probs=51.3

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCC-CEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCC
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFG-CNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGK  239 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~  239 (331)
                      .+|+||| .|-.|+++.+.|...- +++.....+... ..   .+.++.+.++|+|++|+|... ...+. .+.   .+.
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-~~---~~~~~~~~~~DvvFlalp~~~-s~~~~-~~~---~~~   73 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-DA---AARRELLNAADVAILCLPDDA-AREAV-ALI---DNP   73 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-cc---cCchhhhcCCCEEEECCCHHH-HHHHH-HHH---HhC
Confidence            4799999 8999999999998643 366555433222 11   233456688999999998653 22232 212   256


Q ss_pred             CcEEEEcC
Q 020073          240 EGIIVNVG  247 (331)
Q Consensus       240 ga~lIn~s  247 (331)
                      |..+||.|
T Consensus        74 g~~VIDlS   81 (313)
T PRK11863         74 ATRVIDAS   81 (313)
T ss_pred             CCEEEECC
Confidence            88899988

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.46  E-value=0.26  Score=49.54  Aligned_cols=108  Identities=17%  Similarity=0.159  Sum_probs=71.5

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------CCcccc--CCHHhhhcCCCEEEEec---
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------VPYAFY--SNVCELAANSDALIICC---  219 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------~~~~~~--~~l~ell~~aDiV~l~~---  219 (331)
                      +..+.++++.|||.|.+|.++|+.|+..|.+|.++++....           .+....  ... +....+|+|+++.   
T Consensus        11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~-~~~~~~D~Vv~s~Gi~   89 (480)
T PRK01438         11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGP-TLPEDTDLVVTSPGWR   89 (480)
T ss_pred             ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc-cccCCCCEEEECCCcC
Confidence            44678999999999999999999999999999999865421           121111  111 1345689999886   


Q ss_pred             cCChhh-----hh--hccH-HHH-hcCC----CCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073          220 ALTDQT-----RR--MINR-EVM-LALG----KEGIIVNVGRGAVIDENEMVRCLVRG  264 (331)
Q Consensus       220 P~t~~t-----~~--li~~-~~l-~~mk----~ga~lIn~srg~~vd~~al~~aL~~~  264 (331)
                      |.++..     .+  +++. +.+ ..+.    ...+-|--+.|+.-...-+...|+..
T Consensus        90 ~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~  147 (480)
T PRK01438         90 PDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAA  147 (480)
T ss_pred             CCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHc
Confidence            334321     11  2333 222 2332    23578888889998888888888764

>PTZ00325 malate dehydrogenase; Provisional

Probab=94.45  E-value=0.11  Score=49.83  Aligned_cols=62  Identities=19%  Similarity=0.276  Sum_probs=44.6

Q ss_pred             CCCceEEEEec-ChHHHHHHHHHhhCC--CEEEEECCCCCC---CC-------ccc--c---CCHHhhhcCCCEEEEecc
Q 020073          159 LGGKRVGIVGL-GNIGLQVAKRLQAFG--CNVLYNSRSKKP---VP-------YAF--Y---SNVCELAANSDALIICCA  220 (331)
Q Consensus       159 l~g~~vgIiG~-G~IG~~~A~~l~~~G--~~V~~~~~~~~~---~~-------~~~--~---~~l~ell~~aDiV~l~~P  220 (331)
                      ++.++|+|||. |.||..+|..+...+  .++..+|.....   .+       ...  .   .+..+.+++||+|++++-
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG   85 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG   85 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence            56789999999 999999999998444  478888873221   11       111  1   122679999999998873

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=94.42  E-value=0.51  Score=44.47  Aligned_cols=104  Identities=15%  Similarity=0.155  Sum_probs=70.4

Q ss_pred             CceEEEEe-cChHHHHHHHHHhhCCCEEE-EECCC--CCC-CCccccCCHHhhhcC--CCEEEEeccCChhhhhhccHHH
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQAFGCNVL-YNSRS--KKP-VPYAFYSNVCELAAN--SDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~-~~~~~--~~~-~~~~~~~~l~ell~~--aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      +.+|.|.| .|.+|+.+-+.+.+.|++++ .+++.  ... .+...+.+++++-..  .|++++++|.. .+...+.+ .
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~-~v~~~l~e-~   83 (286)
T TIGR01019         6 DTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAP-FAADAIFE-A   83 (286)
T ss_pred             CCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHH-HHHHHHHH-H
Confidence            46799999 79999999999999898743 45555  222 455667899998887  79999999944 44444422 2


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      .++=-+.++++.-+-+. -+++.|.+..+++.++
T Consensus        84 ~~~Gvk~avIis~Gf~e-~~~~~l~~~a~~~gir  116 (286)
T TIGR01019        84 IDAGIELIVCITEGIPV-HDMLKVKRYMEESGTR  116 (286)
T ss_pred             HHCCCCEEEEECCCCCH-HHHHHHHHHHHHcCCE
Confidence            22211234454444333 3677888888888765

ATP citrate lyases appear to form an outgroup.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=94.38  E-value=0.095  Score=49.87  Aligned_cols=58  Identities=16%  Similarity=0.295  Sum_probs=42.3

Q ss_pred             eEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC---------C--Cc------cccCCHHhhhcCCCEEEEecc
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP---------V--PY------AFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~---------~--~~------~~~~~l~ell~~aDiV~l~~P  220 (331)
                      +|+|||.|.+|..+|-.+...|.  +++.+|...+.         .  .+      .....-.+.+++||+|+++.-
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG   77 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG   77 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence            58999999999999998876565  78899986543         0  10      011122478999999999873

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=94.29  E-value=0.17  Score=48.88  Aligned_cols=84  Identities=23%  Similarity=0.306  Sum_probs=52.0

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccc---cC---CHHhhhcCCCEEEEeccCChhhh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAF---YS---NVCELAANSDALIICCALTDQTR  226 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~---~~---~l~ell~~aDiV~l~~P~t~~t~  226 (331)
                      .|++|.|.|.|.+|..+++.++.+|.+|++.+.+..+       .+...   ..   .+.+.....|+|+-+.... .  
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~-~--  259 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAV-H--  259 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCH-H--
Confidence            5789999999999999999999999998876554322       11110   01   1223333467777665321 1  


Q ss_pred             hhccHHHHhcCCCCcEEEEcCC
Q 020073          227 RMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~sr  248 (331)
                       .+ ...++.++++..++.++.
T Consensus       260 -~~-~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        260 -AL-GPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             -HH-HHHHHHhcCCcEEEEeCC
Confidence             11 224556777777776653

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.28  E-value=0.089  Score=39.26  Aligned_cols=34  Identities=35%  Similarity=0.534  Sum_probs=30.9

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      ++.|||.|.+|-++|..++.+|.+|+.+.+.+..
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence            5889999999999999999999999998887654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.27  E-value=0.045  Score=57.09  Aligned_cols=82  Identities=20%  Similarity=0.204  Sum_probs=55.4

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc-c---cCC---HHh-hhcCCCEEEEeccCChhhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA-F---YSN---VCE-LAANSDALIICCALTDQTR  226 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~-~---~~~---l~e-ll~~aDiV~l~~P~t~~t~  226 (331)
                      ..++-|+|+|++|+.+|+.|...|.++++.|.+++.      .+.. .   ..+   |++ -+.++|.|+++++.++.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~  479 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL  479 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence            467999999999999999999999999999887654      1111 1   112   332 3678999999997665554


Q ss_pred             hhccHHHHhcCCCCcEEE
Q 020073          227 RMINREVMLALGKEGIIV  244 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lI  244 (331)
                      .++  ....++-|...++
T Consensus       480 ~i~--~~ar~~~p~~~ii  495 (621)
T PRK03562        480 QLV--ELVKEHFPHLQII  495 (621)
T ss_pred             HHH--HHHHHhCCCCeEE
Confidence            443  2333344554444

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=94.27  E-value=0.24  Score=47.23  Aligned_cols=86  Identities=14%  Similarity=0.196  Sum_probs=55.6

Q ss_pred             eEEEEec-ChHHHHHHHHHhhCCC--EEEEECCCCCC-------CC---cccc-----CCHHhhhcCCCEEEEeccC--C
Q 020073          163 RVGIVGL-GNIGLQVAKRLQAFGC--NVLYNSRSKKP-------VP---YAFY-----SNVCELAANSDALIICCAL--T  222 (331)
Q Consensus       163 ~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~~~-------~~---~~~~-----~~l~ell~~aDiV~l~~P~--t  222 (331)
                      +|+|||. |.+|..+|-.+...|.  ++..+|.....       ..   ....     .++.+.+++||+|+++.-.  .
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            5899999 9999999998876554  78889876632       00   0111     1346899999999998743  2


Q ss_pred             h-hhhh-hc--cHH-------HHhcCCCCcEEEEcCC
Q 020073          223 D-QTRR-MI--NRE-------VMLALGKEGIIVNVGR  248 (331)
Q Consensus       223 ~-~t~~-li--~~~-------~l~~mk~ga~lIn~sr  248 (331)
                      + .++- ++  |.+       .+..-.|.+++|+++-
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN  117 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN  117 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            1 1111 11  111       2333468899999874

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=94.27  E-value=0.56  Score=44.74  Aligned_cols=61  Identities=13%  Similarity=0.154  Sum_probs=48.4

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC-------------CC-ccccCCHHhhhcCCCEEEEe
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP-------------VP-YAFYSNVCELAANSDALIIC  218 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~~-~~~~~~l~ell~~aDiV~l~  218 (331)
                      .+.|++|++||- +++.++++..+..+|++|.+..+..-.             .+ .....+++++++++|+|..-
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d  225 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTD  225 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEee
Confidence            478999999996 799999999999999999988774421             01 12246899999999999974

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.22  E-value=0.051  Score=44.91  Aligned_cols=33  Identities=36%  Similarity=0.541  Sum_probs=28.5

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS  193 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  193 (331)
                      +++|.|+|+|.+|..+|+.|...|+ ++..+|..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            5799999999999999999998898 68887753

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>CHL00194 ycf39 Ycf39; Provisional

Probab=94.21  E-value=0.088  Score=49.78  Aligned_cols=59  Identities=15%  Similarity=0.157  Sum_probs=44.8

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC------CCc-------cccCCHHhhhcCCCEEEEecc
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPY-------AFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~-------~~~~~l~ell~~aDiV~l~~P  220 (331)
                      ++|.|.| .|.||+.+++.|...|++|.+..|+..+      .+.       ....++.++++.+|+|+.+.+
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            3789999 6999999999999999999998886432      111       112356788999999887654

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=94.21  E-value=0.11  Score=48.02  Aligned_cols=60  Identities=18%  Similarity=0.121  Sum_probs=45.0

Q ss_pred             eEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC---CC-------ccccCCHHhhh------cC-CCEEEEeccCC
Q 020073          163 RVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP---VP-------YAFYSNVCELA------AN-SDALIICCALT  222 (331)
Q Consensus       163 ~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~---~~-------~~~~~~l~ell------~~-aDiV~l~~P~t  222 (331)
                      +|.|.|. |.+|+.+++.|...|.+|.+..|++..   .+       .....++.+++      .. +|.|+++.|..
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~   78 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI   78 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence            4778885 999999999999999999999887643   11       11124566677      45 89999888754

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=94.19  E-value=0.081  Score=44.79  Aligned_cols=80  Identities=18%  Similarity=0.214  Sum_probs=51.6

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc---H
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----VPYAFYSNVCELAANSDALIICCALTDQTRRMIN---R  231 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~---~  231 (331)
                      ..|++|++||+=   +.++++++..+.++.++++++..    ..........+++++||+|++.-.      -++|   .
T Consensus         9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs------TlvN~Ti~   79 (147)
T PF04016_consen    9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS------TLVNGTID   79 (147)
T ss_dssp             TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH------HCCTTTHH
T ss_pred             cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee------eeecCCHH
Confidence            468999999961   13788888788999999998744    111234567789999999988632      1232   3


Q ss_pred             HHHhcCCCCcEEEEcC
Q 020073          232 EVMLALGKEGIIVNVG  247 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~s  247 (331)
                      +.+++.++++.++=++
T Consensus        80 ~iL~~~~~~~~vil~G   95 (147)
T PF04016_consen   80 DILELARNAREVILYG   95 (147)
T ss_dssp             HHHHHTTTSSEEEEES
T ss_pred             HHHHhCccCCeEEEEe
Confidence            4556666566555443

; PDB: 3L5O_B 3NPG_A.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=94.14  E-value=0.13  Score=47.71  Aligned_cols=36  Identities=36%  Similarity=0.492  Sum_probs=31.3

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCE-EEEECCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~~  195 (331)
                      .|.+|.|+|.|.+|..+++.++.+|.+ |++.+++..
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~  156 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPD  156 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            578999999999999999999999996 877776543

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=94.11  E-value=0.31  Score=46.99  Aligned_cols=61  Identities=13%  Similarity=0.143  Sum_probs=46.2

Q ss_pred             cCCCceEEEEec---ChHHHHHHHHHh-hCCCEEEEECCCCCC-----C------C--ccccCCHHhhhcCCCEEEEe
Q 020073          158 KLGGKRVGIVGL---GNIGLQVAKRLQ-AFGCNVLYNSRSKKP-----V------P--YAFYSNVCELAANSDALIIC  218 (331)
Q Consensus       158 ~l~g~~vgIiG~---G~IG~~~A~~l~-~~G~~V~~~~~~~~~-----~------~--~~~~~~l~ell~~aDiV~l~  218 (331)
                      ++.|++|++||=   +++..+.+..+. -+|++|.+..+..-.     .      +  .....+++++++++|+|..-
T Consensus       156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~  233 (338)
T PRK08192        156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT  233 (338)
T ss_pred             CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence            588999999997   588889888766 459999888765321     0      1  22347899999999999873

>PRK06182 short chain dehydrogenase; Validated

Probab=94.08  E-value=0.095  Score=48.14  Aligned_cols=36  Identities=31%  Similarity=0.326  Sum_probs=31.9

Q ss_pred             CCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          160 GGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .++++.|.| .|.||+++|+.|...|++|++.+|+.+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~   38 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVD   38 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999 599999999999999999999888754

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=94.01  E-value=0.42  Score=39.86  Aligned_cols=92  Identities=17%  Similarity=0.239  Sum_probs=63.8

Q ss_pred             HHHHHHhhCCCEEEEECCCCCC----------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEE
Q 020073          175 QVAKRLQAFGCNVLYNSRSKKP----------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIV  244 (331)
Q Consensus       175 ~~A~~l~~~G~~V~~~~~~~~~----------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lI  244 (331)
                      ..+++|...|++|++=.-....          .+.....+-++++++||+|+-.-|.+        .+.+++|++|.++|
T Consensus        18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li   89 (136)
T PF05222_consen   18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLI   89 (136)
T ss_dssp             HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred             HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEE
Confidence            5678888889999875443222          23333445668999999988765543        45677899999999


Q ss_pred             EcCCCCccCHHHHHHHHHhCCceEEEeecCCC
Q 020073          245 NVGRGAVIDENEMVRCLVRGEIAGAGLDVFEN  276 (331)
Q Consensus       245 n~srg~~vd~~al~~aL~~~~i~ga~lDV~~~  276 (331)
                      -...-.  ....+++.|.+.++...++|-...
T Consensus        90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr  119 (136)
T PF05222_consen   90 GFLHPA--QNKELLEALAKKGITAFALELIPR  119 (136)
T ss_dssp             EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred             Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence            776555  588899999999999888876544

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=94.01  E-value=0.17  Score=47.91  Aligned_cols=82  Identities=23%  Similarity=0.350  Sum_probs=52.8

Q ss_pred             EEecChHHHHHHHHHhhCCC--EEEEECCCCCC-----------C-----CccccCCHHhhhcCCCEEEEeccC--Ch-h
Q 020073          166 IVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP-----------V-----PYAFYSNVCELAANSDALIICCAL--TD-Q  224 (331)
Q Consensus       166 IiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~-----------~-----~~~~~~~l~ell~~aDiV~l~~P~--t~-~  224 (331)
                      |||.|.+|..+|..+...+.  ++..+|.....           .     ......+-.+.+++||+|+++.-.  .+ .
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~   80 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE   80 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence            69999999999999976665  79999986543           0     001112335789999999998732  21 1


Q ss_pred             hh--------hhcc--HHHHhcCCCCcEEEEcC
Q 020073          225 TR--------RMIN--REVMLALGKEGIIVNVG  247 (331)
Q Consensus       225 t~--------~li~--~~~l~~mk~ga~lIn~s  247 (331)
                      ++        .++.  ...+.+..|.+++|+++
T Consensus        81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs  113 (299)
T TIGR01771        81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT  113 (299)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence            11        1121  12233346889999886

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=93.96  E-value=0.23  Score=46.69  Aligned_cols=80  Identities=19%  Similarity=0.229  Sum_probs=50.3

Q ss_pred             ceEEEEecChHHHHHHHHHh-hCCCEEE-EECCCCCC--------CCcc-ccCCHHhhhc--CCCEEEEeccCChhhhhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQ-AFGCNVL-YNSRSKKP--------VPYA-FYSNVCELAA--NSDALIICCALTDQTRRM  228 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~-~~G~~V~-~~~~~~~~--------~~~~-~~~~l~ell~--~aDiV~l~~P~t~~t~~l  228 (331)
                      .++||||.|.||+..+..+. .-++++. ++++.++.        .+.. .+.+.++++.  +-|+|+.++|........
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a   81 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA   81 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence            37999999999998876665 3467765 45655432        2222 3457888875  578899998865332221


Q ss_pred             ccHHHHhcCCCCcEEEEc
Q 020073          229 INREVMLALGKEGIIVNV  246 (331)
Q Consensus       229 i~~~~l~~mk~ga~lIn~  246 (331)
                           ...++.|..+|+-
T Consensus        82 -----~~al~aGk~VIde   94 (285)
T TIGR03215        82 -----RLLAELGKIVIDL   94 (285)
T ss_pred             -----HHHHHcCCEEEEC
Confidence                 2224556655444

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK04148 hypothetical protein; Provisional

Probab=93.88  E-value=0.097  Score=43.64  Aligned_cols=62  Identities=19%  Similarity=0.279  Sum_probs=45.0

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--------CCcc---ccCCHHhhhcCCCEEEEeccCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--------VPYA---FYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--------~~~~---~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      +++++.+||+| -|..+|..|+..|.+|++.|.++..        ....   .+..--++.+.+|+|-..-|..
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~   88 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPR   88 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCH
Confidence            46789999999 9999999999999999999988763        0110   1122235667778777766633

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=93.86  E-value=0.2  Score=46.23  Aligned_cols=122  Identities=20%  Similarity=0.222  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhC----CC-------EEE
Q 020073          120 AADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAF----GC-------NVL  188 (331)
Q Consensus       120 vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~----G~-------~V~  188 (331)
                      +|-.+++-+|+.+|-                    .|++|...++.|+|.|.-|-.+|+.+...    |.       +|+
T Consensus         4 TaaV~lAgll~Al~~--------------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~   63 (255)
T PF03949_consen    4 TAAVVLAGLLNALRV--------------------TGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIW   63 (255)
T ss_dssp             HHHHHHHHHHHHHHH--------------------HTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEE
T ss_pred             hHHHHHHHHHHHHHH--------------------hCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEE
Confidence            556677777776664                    24568999999999999999999999876    87       488


Q ss_pred             EECCCC------CC---------CC---ccccCCHHhhhcCC--CEEEEeccCChhhhhhccHHHHhcCCC---CcEEEE
Q 020073          189 YNSRSK------KP---------VP---YAFYSNVCELAANS--DALIICCALTDQTRRMINREVMLALGK---EGIIVN  245 (331)
Q Consensus       189 ~~~~~~------~~---------~~---~~~~~~l~ell~~a--DiV~l~~P~t~~t~~li~~~~l~~mk~---ga~lIn  245 (331)
                      .+|+..      ..         ..   .....+|.|+++.+  |+++-+-    ...++++++.++.|.+   ..++.=
T Consensus        64 lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~~~erPIIF~  139 (255)
T PF03949_consen   64 LVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAKHNERPIIFP  139 (255)
T ss_dssp             EEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHHHSSSEEEEE
T ss_pred             EEeccceEeccCccCChhhhhhhccCcccccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhccCCCCEEEE
Confidence            887652      11         01   11124899999998  9888652    2567899999999977   889999


Q ss_pred             cCCCCccCHHHHHHHHHhCC
Q 020073          246 VGRGAVIDENEMVRCLVRGE  265 (331)
Q Consensus       246 ~srg~~vd~~al~~aL~~~~  265 (331)
                      .|...---|-.-.++.+-+.
T Consensus       140 LSNPt~~aE~~peda~~~t~  159 (255)
T PF03949_consen  140 LSNPTPKAECTPEDAYEWTD  159 (255)
T ss_dssp             -SSSCGGSSS-HHHHHHTTT
T ss_pred             CCCCCCcccCCHHHHHhhCC
Confidence            88877644444444444443

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK14851 hypothetical protein; Provisional

Probab=93.73  E-value=0.17  Score=53.18  Aligned_cols=159  Identities=13%  Similarity=0.086  Sum_probs=87.2

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------CC-------------------cc--
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------VP-------------------YA--  200 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~~-------------------~~--  200 (331)
                      ..|++++|+|+|+|.+|..+|..|...|. ++..+|...-.              .+                   ..  
T Consensus        39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~  118 (679)
T PRK14851         39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPF  118 (679)
T ss_pred             HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEE
Confidence            35899999999999999999999998887 56665532100              00                   00  


Q ss_pred             ----ccCCHHhhhcCCCEEEEeccC-ChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCC
Q 020073          201 ----FYSNVCELAANSDALIICCAL-TDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE  275 (331)
Q Consensus       201 ----~~~~l~ell~~aDiV~l~~P~-t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~  275 (331)
                          ...++++++.++|+|+-|+-. +-+++.++++.-.   +.+.-+|..+-.+.   ...+....-+..  .--|.|.
T Consensus       119 ~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~---~~~iP~i~~g~~G~---~g~~~~~~p~~~--~~~~~~~  190 (679)
T PRK14851        119 PAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAR---EKGIPVITAGPLGY---SSAMLVFTPQGM--GFDDYFN  190 (679)
T ss_pred             ecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHH---HCCCCEEEeecccc---cceEEEEcCCCC--CHhHhcc
Confidence                012456778888888877743 2244555554332   22333444331000   000000000000  0112333


Q ss_pred             CCCC--------------CCC----ccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 020073          276 NEPY--------------VPK----ELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQP  323 (331)
Q Consensus       276 ~EP~--------------~~~----~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  323 (331)
                      -+|.              .|.    ...+..+|=++-+-+-++.-....+...+.....+++.|+.
T Consensus       191 ~~~~~~~~~~~~~~~~g~~p~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (679)
T PRK14851        191 IGGKMPEEQKYLRFAMGLAPRPTHIKYMDLSKVDLKGGKGPSLNIACQLCSGMAGTEAVRIILGKG  256 (679)
T ss_pred             CCCCCChHHHHHHHHhcCCCcchhhccCcHhhcCCccCcCCCccHHHHhhhhhHHHHHHHHhhcCC
Confidence            3332              111    22355677778888888877777777777777777776553

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.69  E-value=0.18  Score=50.50  Aligned_cols=104  Identities=15%  Similarity=0.152  Sum_probs=67.5

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC-------Ccccc-CCHHhhhcCCCEEEEec--cC-Chhh---
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV-------PYAFY-SNVCELAANSDALIICC--AL-TDQT---  225 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-------~~~~~-~~l~ell~~aDiV~l~~--P~-t~~t---  225 (331)
                      .|++|+|+|+|.-|.++|+.|+. |.+|+++|......       ..... ..-.+.+.++|+|+..=  |. ++..   
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a   83 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA   83 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence            57899999999999999999995 99999999543221       00001 11224567899887753  21 2211   


Q ss_pred             ----hhhccHHHH--hcCCC-CcEEEEcCCCCccCHHHHHHHHHhC
Q 020073          226 ----RRMINREVM--LALGK-EGIIVNVGRGAVIDENEMVRCLVRG  264 (331)
Q Consensus       226 ----~~li~~~~l--~~mk~-ga~lIn~srg~~vd~~al~~aL~~~  264 (331)
                          ..++++-.+  ..++. ..+-|--+.|+.....-+...|+..
T Consensus        84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~  129 (454)
T PRK01368         84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSN  129 (454)
T ss_pred             HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence                123433333  22332 3677888889999988888888863

>PRK06392 homoserine dehydrogenase; Provisional

Probab=93.69  E-value=0.31  Score=46.74  Aligned_cols=102  Identities=17%  Similarity=0.272  Sum_probs=61.3

Q ss_pred             eEEEEecChHHHHHHHHHhh--------CCCEEEE-ECCCCCC---CC--------------cc-c-cC--CHHhhh-cC
Q 020073          163 RVGIVGLGNIGLQVAKRLQA--------FGCNVLY-NSRSKKP---VP--------------YA-F-YS--NVCELA-AN  211 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~--------~G~~V~~-~~~~~~~---~~--------------~~-~-~~--~l~ell-~~  211 (331)
                      +|+|+|+|.+|+.+++.+..        ++.+|++ .+++..-   .+              .. . ..  ++++++ .+
T Consensus         2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~   81 (326)
T PRK06392          2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK   81 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence            79999999999999999865        4567654 3443211   10              00 0 11  455543 46


Q ss_pred             CCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHhCC
Q 020073          212 SDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVI-DENEMVRCLVRGE  265 (331)
Q Consensus       212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~v-d~~al~~aL~~~~  265 (331)
                      +|+|+=|.|....-..-. .-..+.++.|.-+|-.+-|.+. .-+.|.++.+++.
T Consensus        82 ~DVvVE~t~~~~~g~~~~-~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g  135 (326)
T PRK06392         82 PDVIVDVTPASKDGIREK-NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNR  135 (326)
T ss_pred             CCEEEECCCCCCcCchHH-HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcC
Confidence            899999987532101011 1123446788888888877775 4556666666554

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=93.69  E-value=0.24  Score=47.10  Aligned_cols=76  Identities=22%  Similarity=0.312  Sum_probs=51.2

Q ss_pred             eEEEEe-cChHHHHHHHHHhhC-CCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCC
Q 020073          163 RVGIVG-LGNIGLQVAKRLQAF-GCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKE  240 (331)
Q Consensus       163 ~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~g  240 (331)
                      +|+|+| .|-.|.++.++|... .+++........   . ...+.+++++++|++++|+|.. .+..+.. ..   .+.|
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---~-~~~~~~~~~~~~D~vFlalp~~-~s~~~~~-~~---~~~g   73 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---K-DAAERAKLLNAADVAILCLPDD-AAREAVS-LV---DNPN   73 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---c-CcCCHhHhhcCCCEEEECCCHH-HHHHHHH-HH---HhCC
Confidence            699999 799999999999864 346554432211   1 1124567778999999999865 3333332 11   2468


Q ss_pred             cEEEEcC
Q 020073          241 GIIVNVG  247 (331)
Q Consensus       241 a~lIn~s  247 (331)
                      ..+||.|
T Consensus        74 ~~VIDlS   80 (310)
T TIGR01851        74 TCIIDAS   80 (310)
T ss_pred             CEEEECC
Confidence            8899988

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=93.64  E-value=0.2  Score=47.95  Aligned_cols=95  Identities=16%  Similarity=0.233  Sum_probs=58.4

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhCCC-------EEEEECCCCCC-------C-------C----ccccCCHHhhhcCCCEE
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAFGC-------NVLYNSRSKKP-------V-------P----YAFYSNVCELAANSDAL  215 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~~~~-------~-------~----~~~~~~l~ell~~aDiV  215 (331)
                      ++|+|||. |.+|..+|-.+...|.       +++.+|.....       .       .    .....+..+.+++||+|
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv   82 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA   82 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence            48999999 9999999999876554       68888874321       0       0    01113456889999999


Q ss_pred             EEeccC--Ch-hhhh-hc--cHH-------HHhcCC-CCcEEEEcCCCCccCHHHHH
Q 020073          216 IICCAL--TD-QTRR-MI--NRE-------VMLALG-KEGIIVNVGRGAVIDENEMV  258 (331)
Q Consensus       216 ~l~~P~--t~-~t~~-li--~~~-------~l~~mk-~ga~lIn~srg~~vd~~al~  258 (331)
                      +++.-.  .+ +|+- ++  |.+       .+.... +.+++|.++  ..+|.-.-+
T Consensus        83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~  137 (322)
T cd01338          83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALI  137 (322)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHH
Confidence            998733  22 1211 11  111       222234 588889886  445554433

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=93.62  E-value=0.31  Score=46.31  Aligned_cols=58  Identities=28%  Similarity=0.319  Sum_probs=42.5

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhCCC--EEEEECCCC--CC-----CC-----------ccc--cCCHHhhhcCCCEEEEe
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAFGC--NVLYNSRSK--KP-----VP-----------YAF--YSNVCELAANSDALIIC  218 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~--~~-----~~-----------~~~--~~~l~ell~~aDiV~l~  218 (331)
                      ++|+|+|. |.+|..+|..+...|.  +|+.+|+..  +.     .+           ...  ..+ .+.+++||+|+++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence            47999997 9999999999988776  588888844  22     00           001  123 3569999999999


Q ss_pred             cc
Q 020073          219 CA  220 (331)
Q Consensus       219 ~P  220 (331)
                      ..
T Consensus        80 ag   81 (309)
T cd05294          80 AG   81 (309)
T ss_pred             cC
Confidence            85

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK06398 aldose dehydrogenase; Validated

Probab=93.61  E-value=0.18  Score=46.11  Aligned_cols=38  Identities=29%  Similarity=0.314  Sum_probs=34.0

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      +++||++.|.| .|.||+++|+.|...|++|+..+|+..
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~   41 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP   41 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            47899999999 579999999999999999999888754

>PRK10206 putative oxidoreductase; Provisional

Probab=93.59  E-value=0.13  Score=49.69  Aligned_cols=62  Identities=16%  Similarity=0.274  Sum_probs=42.6

Q ss_pred             eEEEEecChHHHH-HHHHHhh--CCCEEE-EECCCCCC------CC-ccccCCHHhhhc--CCCEEEEeccCChh
Q 020073          163 RVGIVGLGNIGLQ-VAKRLQA--FGCNVL-YNSRSKKP------VP-YAFYSNVCELAA--NSDALIICCALTDQ  224 (331)
Q Consensus       163 ~vgIiG~G~IG~~-~A~~l~~--~G~~V~-~~~~~~~~------~~-~~~~~~l~ell~--~aDiV~l~~P~t~~  224 (331)
                      ++||||+|.|++. .+..+..  -+++|. ++|++++.      .+ ...+.++++++.  +.|+|++++|....
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H   77 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH   77 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHH
Confidence            7999999998863 3554432  257775 57776532      11 234578999996  57999999986643

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=93.54  E-value=0.9  Score=43.75  Aligned_cols=89  Identities=9%  Similarity=0.058  Sum_probs=61.9

Q ss_pred             cCCCceEEEEecC--hHHHHHHHHHhhCCCEEEEECCCCCC-----C----------C--ccccCCHHhhhcCCCEEEEe
Q 020073          158 KLGGKRVGIVGLG--NIGLQVAKRLQAFGCNVLYNSRSKKP-----V----------P--YAFYSNVCELAANSDALIIC  218 (331)
Q Consensus       158 ~l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~-----~----------~--~~~~~~l~ell~~aDiV~l~  218 (331)
                      .+.|.+|++||-+  ++.++++..+..+|++|.+..+..-.     .          +  .....+++++++++|+|..-
T Consensus       153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~  232 (334)
T PRK12562        153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD  232 (334)
T ss_pred             CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            4789999999975  78999999999999999888764311     0          1  12247899999999999875


Q ss_pred             c------cCC--hh-----hhhhccHHHHhcC-CCCcEEEEc
Q 020073          219 C------ALT--DQ-----TRRMINREVMLAL-GKEGIIVNV  246 (331)
Q Consensus       219 ~------P~t--~~-----t~~li~~~~l~~m-k~ga~lIn~  246 (331)
                      .      ...  ++     -..-++++.++.. |+++++.-+
T Consensus       233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHc  274 (334)
T PRK12562        233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHC  274 (334)
T ss_pred             CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECC
Confidence            3      000  00     1223467777764 677777665

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=93.49  E-value=0.22  Score=47.99  Aligned_cols=83  Identities=10%  Similarity=0.173  Sum_probs=51.9

Q ss_pred             CCceEEEEe-cChHHHHHHHHHhh--C-CCEEEEECCC--CCC-C---C-ccccCCHHhh-hcCCCEEEEeccCChhhhh
Q 020073          160 GGKRVGIVG-LGNIGLQVAKRLQA--F-GCNVLYNSRS--KKP-V---P-YAFYSNVCEL-AANSDALIICCALTDQTRR  227 (331)
Q Consensus       160 ~g~~vgIiG-~G~IG~~~A~~l~~--~-G~~V~~~~~~--~~~-~---~-~~~~~~l~el-l~~aDiV~l~~P~t~~t~~  227 (331)
                      ++.+|+||| .|-+|+++.+.|..  + ..++..+...  ..+ .   + .....++++. +.++|++++++|.. ....
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~-~s~~   81 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGRE-ASAA   81 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHH-HHHH
Confidence            456899999 59999999999987  3 2365544322  221 1   1 1112345554 37899999999855 2222


Q ss_pred             hccHHHHhcCCCCcEEEEcC
Q 020073          228 MINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       228 li~~~~l~~mk~ga~lIn~s  247 (331)
                      +. .+.   .+.|..+|+.|
T Consensus        82 ~~-~~~---~~~g~~VIDlS   97 (336)
T PRK08040         82 YA-EEA---TNAGCLVIDSS   97 (336)
T ss_pred             HH-HHH---HHCCCEEEECC
Confidence            22 212   25688999988

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=93.41  E-value=0.087  Score=57.70  Aligned_cols=89  Identities=12%  Similarity=0.201  Sum_probs=62.6

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEE-------------------------EEE--CCC-----CCC------CCc-
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNV-------------------------LYN--SRS-----KKP------VPY-  199 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V-------------------------~~~--~~~-----~~~------~~~-  199 (331)
                      +.-.++.|+|.|++|+..++.+.++|++.                         ++.  .+.     ..+      ..+ 
T Consensus       201 v~P~~vVi~G~G~Vg~gA~~i~~~lg~~~v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~y~  280 (1042)
T PLN02819        201 ICPLVFVFTGSGNVSQGAQEIFKLLPHTFVEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKADYY  280 (1042)
T ss_pred             CCCeEEEEeCCchHHHHHHHHHhhcCCCccCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhhhc
Confidence            44578999999999999999999886541                         100  000     000      000 


Q ss_pred             ----cccCC-HHhhhcCCCEEEEeccCChhhhhhccHH-HHhcCCCCc----EEEEcC
Q 020073          200 ----AFYSN-VCELAANSDALIICCALTDQTRRMINRE-VMLALGKEG----IIVNVG  247 (331)
Q Consensus       200 ----~~~~~-l~ell~~aDiV~l~~P~t~~t~~li~~~-~l~~mk~ga----~lIn~s  247 (331)
                          .+... +++.++.+|+|+.|+-..+.+-.++..+ ..+.||+|.    ++++++
T Consensus       281 ~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs  338 (1042)
T PLN02819        281 AHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT  338 (1042)
T ss_pred             cCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence                01111 4568899999999998788888899888 777899998    899887

>PLN02214 cinnamoyl-CoA reductase

Probab=93.39  E-value=0.24  Score=47.50  Aligned_cols=62  Identities=21%  Similarity=0.228  Sum_probs=46.5

Q ss_pred             CCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC--------C-----Cc-------cccCCHHhhhcCCCEEEE
Q 020073          159 LGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP--------V-----PY-------AFYSNVCELAANSDALII  217 (331)
Q Consensus       159 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~--------~-----~~-------~~~~~l~ell~~aDiV~l  217 (331)
                      ++++++.|.|. |-||+.+++.|...|.+|++..|+...        .     ..       ....+++++++.+|+|+.
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih   87 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFH   87 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEE
Confidence            67899999996 999999999999999999988775431        0     01       011346677888998877


Q ss_pred             ecc
Q 020073          218 CCA  220 (331)
Q Consensus       218 ~~P  220 (331)
                      +..
T Consensus        88 ~A~   90 (342)
T PLN02214         88 TAS   90 (342)
T ss_pred             ecC
Confidence            764

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=93.36  E-value=0.23  Score=47.64  Aligned_cols=58  Identities=16%  Similarity=0.069  Sum_probs=42.6

Q ss_pred             eEEEEec-ChHHHHHHHHHhhCC-------CEEEEECCCCCC---CC----cc-----------ccCCHHhhhcCCCEEE
Q 020073          163 RVGIVGL-GNIGLQVAKRLQAFG-------CNVLYNSRSKKP---VP----YA-----------FYSNVCELAANSDALI  216 (331)
Q Consensus       163 ~vgIiG~-G~IG~~~A~~l~~~G-------~~V~~~~~~~~~---~~----~~-----------~~~~l~ell~~aDiV~  216 (331)
                      +|+|+|. |.+|+.++..|...+       .+|+.+|+....   .+    ..           ...++.+.+++||+|+
T Consensus         4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI   83 (325)
T cd01336           4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI   83 (325)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence            6999998 999999999997633       479888875421   00    00           1245678899999999


Q ss_pred             Eecc
Q 020073          217 ICCA  220 (331)
Q Consensus       217 l~~P  220 (331)
                      .+.-
T Consensus        84 ~tAG   87 (325)
T cd01336          84 LVGA   87 (325)
T ss_pred             EeCC
Confidence            8763

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06523 short chain dehydrogenase; Provisional

Probab=93.35  E-value=0.15  Score=46.34  Aligned_cols=39  Identities=33%  Similarity=0.484  Sum_probs=34.4

Q ss_pred             ccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          157 SKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       157 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .+++|+++.|.| .|.||+++|+.|...|++|+..+|+..
T Consensus         5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~   44 (260)
T PRK06523          5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP   44 (260)
T ss_pred             cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence            358899999999 589999999999999999999888653

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=93.23  E-value=0.28  Score=47.00  Aligned_cols=59  Identities=20%  Similarity=0.225  Sum_probs=43.1

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhCCC-------EEEEECCCCC--C-----------C-Cc----cccCCHHhhhcCCCEE
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAFGC-------NVLYNSRSKK--P-----------V-PY----AFYSNVCELAANSDAL  215 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~~~--~-----------~-~~----~~~~~l~ell~~aDiV  215 (331)
                      .+|+|||. |.+|+.+|-.+...|.       +++.+|....  .           . ..    ....+..+.+++||+|
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV   83 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA   83 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence            37999998 9999999999886664       7888888531  1           0 00    0113456899999999


Q ss_pred             EEecc
Q 020073          216 IICCA  220 (331)
Q Consensus       216 ~l~~P  220 (331)
                      +++.-
T Consensus        84 VitAG   88 (323)
T TIGR01759        84 LLVGA   88 (323)
T ss_pred             EEeCC
Confidence            99873

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=93.22  E-value=0.3  Score=47.25  Aligned_cols=81  Identities=20%  Similarity=0.334  Sum_probs=50.6

Q ss_pred             CceEEEEe-cChHHHHHHHHHhh-CCCE---EEEEC-C-CCCC-CCc----cccC--CHHhhhcCCCEEEEeccCChhhh
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQA-FGCN---VLYNS-R-SKKP-VPY----AFYS--NVCELAANSDALIICCALTDQTR  226 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~~-~G~~---V~~~~-~-~~~~-~~~----~~~~--~l~ell~~aDiV~l~~P~t~~t~  226 (331)
                      +.+||||| .|.+|+.+.+.|.. -.+.   +..+. . +..+ ...    ....  +.+ .+.+.|++++++|.. .+.
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~-~~~~~Divf~a~~~~-~s~   82 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKIN-SFEGVDIAFFSAGGE-VSR   82 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHH-HhcCCCEEEECCChH-HHH
Confidence            46899999 59999999999983 5665   43332 2 2222 111    1111  333 357899999999854 333


Q ss_pred             hhccHHHHhcCCCCcEEEEcC
Q 020073          227 RMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~s  247 (331)
                      .+..+ .   .+.|..+|+.|
T Consensus        83 ~~~~~-~---~~~G~~VID~S   99 (347)
T PRK06728         83 QFVNQ-A---VSSGAIVIDNT   99 (347)
T ss_pred             HHHHH-H---HHCCCEEEECc
Confidence            33321 1   35789999988

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=93.19  E-value=0.22  Score=48.10  Aligned_cols=103  Identities=14%  Similarity=0.107  Sum_probs=66.8

Q ss_pred             ceEEEEecChHHHHHHHHHhhC--CCEEE-EECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCC-h-hhhhhc
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF--GCNVL-YNSRSKKP-------VPYAFYSNVCELAANSDALIICCALT-D-QTRRMI  229 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~-~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t-~-~t~~li  229 (331)
                      .+|||||+ .+|+..++.++..  +++++ ++|+..++       .+...+.++++++.+.|++++++|.+ + .+..-+
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~   82 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL   82 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence            58999999 6899999988765  47765 46776543       23345789999999999999999853 2 222222


Q ss_pred             cHHHHhcCCCCc-EEEEcCCCCccCHHHHHHHHHhCCceEE
Q 020073          230 NREVMLALGKEG-IIVNVGRGAVIDENEMVRCLVRGEIAGA  269 (331)
Q Consensus       230 ~~~~l~~mk~ga-~lIn~srg~~vd~~al~~aL~~~~i~ga  269 (331)
                      -.   +.++.|. +++.===. .-+.++|+++.++..+...
T Consensus        83 a~---~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~l~  119 (343)
T TIGR01761        83 AR---ALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRYL  119 (343)
T ss_pred             HH---HHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCEEE
Confidence            22   2345553 44432212 3455668888887766533

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=93.19  E-value=0.37  Score=46.07  Aligned_cols=87  Identities=15%  Similarity=0.223  Sum_probs=54.1

Q ss_pred             CCceEEEEecChHHHHHHHHHhh-CC-CEEEEECCCCCCC----CccccCCHHhhhc--CCCEEEEeccCChhhhhhccH
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQA-FG-CNVLYNSRSKKPV----PYAFYSNVCELAA--NSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~-~G-~~V~~~~~~~~~~----~~~~~~~l~ell~--~aDiV~l~~P~t~~t~~li~~  231 (331)
                      .|.+|.|+|.|.||..+++.++. +| .+|++.++++.+.    ........+++..  ..|+|+-++... .+...+ .
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G~~-~~~~~~-~  240 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVGGR-GSQSAI-N  240 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCCCC-ccHHHH-H
Confidence            47899999999999999998885 54 5898888776541    1100011222222  368888776521 011122 3


Q ss_pred             HHHhcCCCCcEEEEcCC
Q 020073          232 EVMLALGKEGIIVNVGR  248 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~sr  248 (331)
                      ..++.++++..++.++-
T Consensus       241 ~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         241 QIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             HHHHhCcCCcEEEEEee
Confidence            35677888888877663

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=93.18  E-value=0.28  Score=45.29  Aligned_cols=85  Identities=15%  Similarity=0.194  Sum_probs=68.2

Q ss_pred             HHHHHHHHhhCCCEEEEECCCCCC-----------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCc
Q 020073          173 GLQVAKRLQAFGCNVLYNSRSKKP-----------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG  241 (331)
Q Consensus       173 G~~~A~~l~~~G~~V~~~~~~~~~-----------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga  241 (331)
                      |..+|-.+...|.+|+..+++.+-           .++...++=.++.+.+.+.++.+|....|.++. ++.++.++.|+
T Consensus        33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA  111 (340)
T COG4007          33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA  111 (340)
T ss_pred             chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence            678888888889999999987653           233334555678999999999999999999865 88999999999


Q ss_pred             EEEEcCCCCccCHHHHHHHH
Q 020073          242 IIVNVGRGAVIDENEMVRCL  261 (331)
Q Consensus       242 ~lIn~srg~~vd~~al~~aL  261 (331)
                      ++.|+..-+.   -.|+..|
T Consensus       112 VicnTCT~sp---~vLy~~L  128 (340)
T COG4007         112 VICNTCTVSP---VVLYYSL  128 (340)
T ss_pred             EecccccCch---hHHHHHh
Confidence            9999986554   3566666

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=93.18  E-value=0.44  Score=48.55  Aligned_cols=89  Identities=12%  Similarity=0.052  Sum_probs=63.3

Q ss_pred             cCCCceEEEEec---ChHHHHHHHHHhhCC-CEEEEECCCCCC-C----------C--ccccCCHHhhhcCCCEE--EE-
Q 020073          158 KLGGKRVGIVGL---GNIGLQVAKRLQAFG-CNVLYNSRSKKP-V----------P--YAFYSNVCELAANSDAL--II-  217 (331)
Q Consensus       158 ~l~g~~vgIiG~---G~IG~~~A~~l~~~G-~~V~~~~~~~~~-~----------~--~~~~~~l~ell~~aDiV--~l-  217 (331)
                      .+.|.+|++||=   |++..+++..+..|| ++|.+..+..-. .          +  .....+++++++++|+.  .. 
T Consensus       171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw~~  250 (525)
T PRK13376        171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIWYF  250 (525)
T ss_pred             CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceEEE
Confidence            477999999997   699999999999998 999887764321 0          1  22357899999999952  22 


Q ss_pred             ------eccCC-----hh--hhhhccHHHHhcCCCCcEEEEc
Q 020073          218 ------CCALT-----DQ--TRRMINREVMLALGKEGIIVNV  246 (331)
Q Consensus       218 ------~~P~t-----~~--t~~li~~~~l~~mk~ga~lIn~  246 (331)
                            ..+..     .+  -...++++.++.+|+++++.-+
T Consensus       251 ~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHc  292 (525)
T PRK13376        251 TRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHP  292 (525)
T ss_pred             eccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECC
Confidence                  12111     11  1234689999999999888765

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=93.18  E-value=0.24  Score=44.85  Aligned_cols=38  Identities=32%  Similarity=0.517  Sum_probs=33.8

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      ++.||++.|.| .|.||+.+|+.|...|++|++.+|+..
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~   45 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA   45 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            47899999999 599999999999999999999888643

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.11  E-value=0.32  Score=47.02  Aligned_cols=82  Identities=26%  Similarity=0.329  Sum_probs=54.7

Q ss_pred             eEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-----C--Cccc-c---C-C----HHhhh--cCCCEEEEeccCCh
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-----V--PYAF-Y---S-N----VCELA--ANSDALIICCALTD  223 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-----~--~~~~-~---~-~----l~ell--~~aDiV~l~~P~t~  223 (331)
                      ++.|+|.|.||...++.++.+|. +|++.|+++.+     .  +... .   . +    ..++.  ..+|+++-|.. ++
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-~~  249 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-SP  249 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-CH
Confidence            99999999999999999999997 67788887654     1  1111 1   1 1    11233  24899998876 22


Q ss_pred             hhhhhccHHHHhcCCCCcEEEEcCCC
Q 020073          224 QTRRMINREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       224 ~t~~li~~~~l~~mk~ga~lIn~srg  249 (331)
                      .   .+ ...++..+++..++.++=.
T Consensus       250 ~---~~-~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         250 P---AL-DQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             H---HH-HHHHHHhcCCCEEEEEecc
Confidence            2   11 3456667888877777643

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=93.11  E-value=0.29  Score=45.93  Aligned_cols=61  Identities=18%  Similarity=0.149  Sum_probs=44.6

Q ss_pred             CCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC----------C----c-------cccCCHHhhhcCCCEEEE
Q 020073          160 GGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV----------P----Y-------AFYSNVCELAANSDALII  217 (331)
Q Consensus       160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------~----~-------~~~~~l~ell~~aDiV~l  217 (331)
                      +|++|.|.| .|-||+.+++.|...|.+|++..|.....          .    .       ....+++++++.+|+|+.
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih   82 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH   82 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence            368999999 69999999999999999998776653210          0    0       011346677888998877


Q ss_pred             ecc
Q 020073          218 CCA  220 (331)
Q Consensus       218 ~~P  220 (331)
                      +..
T Consensus        83 ~A~   85 (322)
T PLN02662         83 TAS   85 (322)
T ss_pred             eCC
Confidence            663

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=93.10  E-value=0.19  Score=45.75  Aligned_cols=64  Identities=23%  Similarity=0.321  Sum_probs=45.9

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC----C----Cccc--------cCCHHhhh-cCCCEEEEec
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP----V----PYAF--------YSNVCELA-ANSDALIICC  219 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~----~~~~--------~~~l~ell-~~aDiV~l~~  219 (331)
                      ...++++.|+| .|.||+.+++.|...|++|++..|+...    .    ....        ..++.+.+ ...|+|+.+.
T Consensus        14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~   93 (251)
T PLN00141         14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICAT   93 (251)
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECC
Confidence            46789999999 5999999999999999999887765432    0    1110        11244555 5799999876


Q ss_pred             cC
Q 020073          220 AL  221 (331)
Q Consensus       220 P~  221 (331)
                      +.
T Consensus        94 g~   95 (251)
T PLN00141         94 GF   95 (251)
T ss_pred             CC
Confidence            54

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=93.08  E-value=0.96  Score=46.19  Aligned_cols=137  Identities=15%  Similarity=0.144  Sum_probs=98.2

Q ss_pred             ccCCCceEEEEecCh-HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073          157 SKLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML  235 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~  235 (331)
                      ..+.|++..++|-.. +|..++..|+.....|..+-..        ..++.|.+.++|+|+.++--    .+++..+.  
T Consensus       158 v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSK--------T~~lae~v~~ADIvIvAiG~----PefVKgdW--  223 (935)
T KOG4230|consen  158 VFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSK--------TRNLAEKVSRADIVIVAIGQ----PEFVKGDW--  223 (935)
T ss_pred             CccccceeEEEecccccCChHHHHHHhcCceEEEecCC--------CccHHHHhccCCEEEEEcCC----cceeeccc--
Confidence            458899999999655 5899999999989999876431        35899999999999999842    24565555  


Q ss_pred             cCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHH
Q 020073          236 ALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNL  315 (331)
Q Consensus       236 ~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl  315 (331)
                       +|||+++|+++---+-|..-     ++|.-  ..-||-..+-..   .    --.+||=-||.-.-+..-+.+.+++..
T Consensus       224 -iKpGavVIDvGINyvpD~~K-----ksg~k--lvGDVdfe~Ake---v----as~ITPVPGGVGPMTVAMLmqNtveaA  288 (935)
T KOG4230|consen  224 -IKPGAVVIDVGINYVPDPSK-----KSGFK--LVGDVDFESAKE---V----ASFITPVPGGVGPMTVAMLMQNTVEAA  288 (935)
T ss_pred             -ccCCcEEEEccccccCCCCC-----cccce--EeeecchHhhhh---h----hhccccCCCCcchHHHHHHHHHHHHHH
Confidence             69999999998655544321     22322  456775544321   1    126899999988877777777788888


Q ss_pred             HHHHcCC
Q 020073          316 EALFSNQ  322 (331)
Q Consensus       316 ~~~~~g~  322 (331)
                      .+++.+.
T Consensus       289 KR~r~es  295 (935)
T KOG4230|consen  289 KRQREES  295 (935)
T ss_pred             HHHHHhc
Confidence            8777653

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=93.05  E-value=0.26  Score=46.85  Aligned_cols=84  Identities=21%  Similarity=0.256  Sum_probs=55.8

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCC-HHhhhcCCCEEEEeccCChhhhhhccHH
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSN-VCELAANSDALIICCALTDQTRRMINRE  232 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~-l~ell~~aDiV~l~~P~t~~t~~li~~~  232 (331)
                      .|.+|.|.|.|.+|...++.++.+|.+|++.+++.++      .+....-+ .++.-...|+++.+.... .   .+ ..
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~~-~~  239 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---LV-PP  239 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---HH-HH
Confidence            4789999999999999999999999999888876544      22211101 111112467776665432 1   22 44


Q ss_pred             HHhcCCCCcEEEEcCC
Q 020073          233 VMLALGKEGIIVNVGR  248 (331)
Q Consensus       233 ~l~~mk~ga~lIn~sr  248 (331)
                      .++.++++..++.++-
T Consensus       240 ~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       240 ALEALDRGGVLAVAGI  255 (329)
T ss_pred             HHHhhCCCcEEEEEec
Confidence            6677899988888764

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=93.02  E-value=0.25  Score=47.37  Aligned_cols=65  Identities=20%  Similarity=0.156  Sum_probs=47.1

Q ss_pred             CccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC-----------Ccc-------ccCCHHhhhcCCCEEE
Q 020073          156 GSKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV-----------PYA-------FYSNVCELAANSDALI  216 (331)
Q Consensus       156 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----------~~~-------~~~~l~ell~~aDiV~  216 (331)
                      +++.++++|.|.| .|-||+.+++.|...|.+|++.++.....           ...       ....+.+++++.|+|+
T Consensus         5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   84 (353)
T PLN02896          5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF   84 (353)
T ss_pred             ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence            5678899999999 69999999999999999999877654210           000       1123556777889777


Q ss_pred             Eecc
Q 020073          217 ICCA  220 (331)
Q Consensus       217 l~~P  220 (331)
                      -+..
T Consensus        85 h~A~   88 (353)
T PLN02896         85 HVAA   88 (353)
T ss_pred             ECCc
Confidence            6653

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=92.96  E-value=0.28  Score=47.25  Aligned_cols=84  Identities=27%  Similarity=0.326  Sum_probs=55.0

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCcc---ccC---CHHhhhcCCCEEEEeccCChhhh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYA---FYS---NVCELAANSDALIICCALTDQTR  226 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~---~~~---~l~ell~~aDiV~l~~P~t~~t~  226 (331)
                      .|.++.|.|.|.+|..+++.++..|.+|++..++.++       .+..   ...   .+.+.....|+++-+++....  
T Consensus       180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~--  257 (357)
T PLN02514        180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP--  257 (357)
T ss_pred             CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH--
Confidence            5788999999999999999999999998877655422       1111   011   122333456888877653221  


Q ss_pred             hhccHHHHhcCCCCcEEEEcCC
Q 020073          227 RMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~sr  248 (331)
                        + ...++.++++..++.++.
T Consensus       258 --~-~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        258 --L-EPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             --H-HHHHHHhccCCEEEEECC
Confidence              1 234566788888888764

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=92.96  E-value=0.74  Score=45.57  Aligned_cols=102  Identities=15%  Similarity=0.150  Sum_probs=68.6

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-C-----------Ccccc--CCHHhhhcCCCEEEEec--cC-Chhh
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-V-----------PYAFY--SNVCELAANSDALIICC--AL-TDQT  225 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~-----------~~~~~--~~l~ell~~aDiV~l~~--P~-t~~t  225 (331)
                      ++.|||+|.+|.++|+.|+..|++|.++|..... .           +....  .+ .+.+.++|+|+..-  |. +++.
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~   79 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV   79 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence            4789999999999999999999999999975432 1           11111  12 34567899887754  22 2221


Q ss_pred             h-------hhccHH-HH-hcCCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073          226 R-------RMINRE-VM-LALGKEGIIVNVGRGAVIDENEMVRCLVRGE  265 (331)
Q Consensus       226 ~-------~li~~~-~l-~~mk~ga~lIn~srg~~vd~~al~~aL~~~~  265 (331)
                      .       .++++. .+ ..++...+-|.-+.|+.-...-+...|+...
T Consensus        80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g  128 (433)
T TIGR01087        80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG  128 (433)
T ss_pred             HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            1       133333 22 2234457888889999999998888888754

>cd00704 MDH Malate dehydrogenase

Probab=92.94  E-value=0.28  Score=46.99  Aligned_cols=94  Identities=17%  Similarity=0.169  Sum_probs=58.9

Q ss_pred             eEEEEec-ChHHHHHHHHHhhCCC-------EEEEECCCC--CC-C-------Cc--------cccCCHHhhhcCCCEEE
Q 020073          163 RVGIVGL-GNIGLQVAKRLQAFGC-------NVLYNSRSK--KP-V-------PY--------AFYSNVCELAANSDALI  216 (331)
Q Consensus       163 ~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~~--~~-~-------~~--------~~~~~l~ell~~aDiV~  216 (331)
                      +|+|+|. |.||+.+|..|...|.       +++.+|+..  +. .       ..        ....+..+.+++||+|+
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV   81 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI   81 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence            7999999 9999999999876443       488888875  32 0       00        00135678999999999


Q ss_pred             Eecc--CCh-hhh--------hhcc--HHHHhcC-CCCcEEEEcCCCCccCHHHHH
Q 020073          217 ICCA--LTD-QTR--------RMIN--REVMLAL-GKEGIIVNVGRGAVIDENEMV  258 (331)
Q Consensus       217 l~~P--~t~-~t~--------~li~--~~~l~~m-k~ga~lIn~srg~~vd~~al~  258 (331)
                      ++.-  ..+ +|+        .++.  ...+... +|.+++|.++  ..+|--+.+
T Consensus        82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~  135 (323)
T cd00704          82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALI  135 (323)
T ss_pred             EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHH
Confidence            8763  222 121        1110  1123334 5788888875  555554433

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08628 short chain dehydrogenase; Provisional

Probab=92.90  E-value=0.34  Score=43.88  Aligned_cols=38  Identities=29%  Similarity=0.316  Sum_probs=33.6

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      ++.|+++.|.| .|.||+.+|+.|...|++|++.+++..
T Consensus         4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~   42 (258)
T PRK08628          4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP   42 (258)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh
Confidence            58899999999 689999999999999999988887653

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=92.88  E-value=0.22  Score=48.84  Aligned_cols=39  Identities=33%  Similarity=0.374  Sum_probs=34.1

Q ss_pred             CccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          156 GSKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       156 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      ++...++++.|+| .|.||+.+++.|...|.+|++.+|+.
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~   94 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK   94 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence            4557788999999 59999999999999999999888765

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=92.88  E-value=0.3  Score=47.55  Aligned_cols=34  Identities=47%  Similarity=0.663  Sum_probs=30.8

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRS  193 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~  193 (331)
                      .|.+|.|.|.|.+|..+++.++.+|.+|++.+++
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~  211 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS  211 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCC
Confidence            4789999999999999999999999998887654

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=92.88  E-value=0.36  Score=45.78  Aligned_cols=84  Identities=29%  Similarity=0.331  Sum_probs=51.9

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc---ccC--C-HHhhhcCCCEEEEeccCChhhhh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA---FYS--N-VCELAANSDALIICCALTDQTRR  227 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~---~~~--~-l~ell~~aDiV~l~~P~t~~t~~  227 (331)
                      .|.++.|.|.|.+|+.+++.++.+|.+|++.+++...      .+..   ...  + ..+.-...|+|+-+.+...    
T Consensus       169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~----  244 (337)
T cd05283         169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASH----  244 (337)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcc----
Confidence            4678999999999999999999999999888776533      1110   000  0 1112244666666655321    


Q ss_pred             hccHHHHhcCCCCcEEEEcCC
Q 020073          228 MINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       228 li~~~~l~~mk~ga~lIn~sr  248 (331)
                       .-...++.+++++.+++++.
T Consensus       245 -~~~~~~~~l~~~G~~v~~g~  264 (337)
T cd05283         245 -DLDPYLSLLKPGGTLVLVGA  264 (337)
T ss_pred             -hHHHHHHHhcCCCEEEEEec
Confidence             11334555666666666653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=92.86  E-value=0.25  Score=47.40  Aligned_cols=29  Identities=38%  Similarity=0.531  Sum_probs=23.5

Q ss_pred             eEEEEecChHHHHHHHHHhhCC----CEEEEEC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFG----CNVLYNS  191 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G----~~V~~~~  191 (331)
                      +|||+|+|+||+.+.+.+...+    ++|...+
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaIn   33 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALN   33 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEe
Confidence            5899999999999999987643    6776543

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK08374 homoserine dehydrogenase; Provisional

Probab=92.78  E-value=0.46  Score=45.77  Aligned_cols=113  Identities=19%  Similarity=0.245  Sum_probs=63.7

Q ss_pred             ceEEEEecChHHHHHHHHHhh--------CC--CEEEEE-CCCCC---CCCc---------------cc--------cCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQA--------FG--CNVLYN-SRSKK---PVPY---------------AF--------YSN  204 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~--------~G--~~V~~~-~~~~~---~~~~---------------~~--------~~~  204 (331)
                      -+|+|+|+|.+|+.+++.+..        +|  .+|.+. +++..   +.+.               ..        ..+
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~   82 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS   82 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence            479999999999999998865        56  455543 43211   0000               00        115


Q ss_pred             HHhhh--cCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHhCCce-EEEeecCCCCCC
Q 020073          205 VCELA--ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVI-DENEMVRCLVRGEIA-GAGLDVFENEPY  279 (331)
Q Consensus       205 l~ell--~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~v-d~~al~~aL~~~~i~-ga~lDV~~~EP~  279 (331)
                      +++++  ..+|+|+-+.+.. ....++    ...++.|.-+|-..-|.+- ..++|.+.-+++... .+.--|...-|.
T Consensus        83 ~~ell~~~~~DVvVd~t~~~-~a~~~~----~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPi  156 (336)
T PRK08374         83 PEEIVEEIDADIVVDVTNDK-NAHEWH----LEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPI  156 (336)
T ss_pred             HHHHHhcCCCCEEEECCCcH-HHHHHH----HHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCc
Confidence            67777  4799999887432 222222    2335667666665555432 555666655554322 233445555564

>PRK08324 short chain dehydrogenase; Validated

Probab=92.76  E-value=0.21  Score=52.70  Aligned_cols=39  Identities=36%  Similarity=0.474  Sum_probs=34.9

Q ss_pred             ccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          157 SKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       157 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      ..+.|+++.|.| .|.||+.+|+.|...|++|++.+++..
T Consensus       418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~  457 (681)
T PRK08324        418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE  457 (681)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence            457899999999 699999999999999999999988754

>PRK05442 malate dehydrogenase; Provisional

Probab=92.70  E-value=0.33  Score=46.60  Aligned_cols=93  Identities=16%  Similarity=0.226  Sum_probs=56.7

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhCCC-------EEEEECCCCCC-------C-------Cc----cccCCHHhhhcCCCEE
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAFGC-------NVLYNSRSKKP-------V-------PY----AFYSNVCELAANSDAL  215 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~~~~-------~-------~~----~~~~~l~ell~~aDiV  215 (331)
                      .+|+|||. |.+|..+|-.+...|.       ++..+|.....       .       ..    ....+..+.+++||+|
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV   84 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA   84 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence            48999998 9999999998765333       68888874321       0       00    1123456899999999


Q ss_pred             EEeccC--Ch-hhhh-hc--cHH-------HHhc-CCCCcEEEEcCCCCccCHHH
Q 020073          216 IICCAL--TD-QTRR-MI--NRE-------VMLA-LGKEGIIVNVGRGAVIDENE  256 (331)
Q Consensus       216 ~l~~P~--t~-~t~~-li--~~~-------~l~~-mk~ga~lIn~srg~~vd~~a  256 (331)
                      +++.-.  .+ +|+- ++  |.+       .+.. -++.+++|.++  ..+|--.
T Consensus        85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t  137 (326)
T PRK05442         85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNA  137 (326)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHH
Confidence            998732  21 1221 11  222       1222 23688999887  4454444

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=92.70  E-value=0.25  Score=47.98  Aligned_cols=60  Identities=22%  Similarity=0.267  Sum_probs=43.4

Q ss_pred             CCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC--C----Ccc-------ccCCHHhhhcCCCEEEEec
Q 020073          160 GGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP--V----PYA-------FYSNVCELAANSDALIICC  219 (331)
Q Consensus       160 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~--~----~~~-------~~~~l~ell~~aDiV~l~~  219 (331)
                      .+++|.|.|. |-||+.+++.|...|.+|++.+|....  .    ...       ...++..++.++|+|+-+.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   93 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA   93 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence            4689999996 999999999999999999998875321  0    011       0122445667899888665

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=92.63  E-value=0.28  Score=47.30  Aligned_cols=80  Identities=15%  Similarity=0.191  Sum_probs=49.4

Q ss_pred             eEEEEe-cChHHHHHHHHHhhCCCE---EEEECCCCCC---C---Cc-cccCCH-HhhhcCCCEEEEeccCChhhhhhcc
Q 020073          163 RVGIVG-LGNIGLQVAKRLQAFGCN---VLYNSRSKKP---V---PY-AFYSNV-CELAANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       163 ~vgIiG-~G~IG~~~A~~l~~~G~~---V~~~~~~~~~---~---~~-~~~~~l-~ell~~aDiV~l~~P~t~~t~~li~  230 (331)
                      +|+||| .|.+|+++++.|...|+.   +.++.+....   .   +. ....++ .+.+.++|+|+.|+|.. .+..+. 
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~a-   78 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEFA-   78 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHHH-
Confidence            589999 899999999999886664   3333333221   1   11 011122 23458899999999855 333332 


Q ss_pred             HHHHhcCCCCcEEEEcC
Q 020073          231 REVMLALGKEGIIVNVG  247 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~s  247 (331)
                      ...   .+.|.++|+.|
T Consensus        79 ~~~---~~~G~~VID~s   92 (339)
T TIGR01296        79 PKA---AKCGAIVIDNT   92 (339)
T ss_pred             HHH---HHCCCEEEECC
Confidence            222   35688889887

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK07856 short chain dehydrogenase; Provisional

Probab=92.63  E-value=0.19  Score=45.56  Aligned_cols=37  Identities=30%  Similarity=0.437  Sum_probs=33.0

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      ++.||++.|.| .|.||+++|+.|...|++|+..+|+.
T Consensus         3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~   40 (252)
T PRK07856          3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA   40 (252)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence            46799999999 58999999999999999999888865

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=92.61  E-value=0.26  Score=46.69  Aligned_cols=36  Identities=31%  Similarity=0.423  Sum_probs=32.0

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCE-EEEECCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~~  195 (331)
                      .|.+|.|+|.|.+|..+++.++.+|.+ |++.+++..
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~  199 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPE  199 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            388999999999999999999999998 888877643

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=92.57  E-value=0.42  Score=44.90  Aligned_cols=84  Identities=21%  Similarity=0.292  Sum_probs=55.6

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc---ccC--CH-HhhhcCCCEEEEeccCChhhhh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA---FYS--NV-CELAANSDALIICCALTDQTRR  227 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~---~~~--~l-~ell~~aDiV~l~~P~t~~t~~  227 (331)
                      .|.++.|+|.|.+|+.+++.++.+|.+|++.+++...      .+..   ...  +. .......|+++-++....    
T Consensus       162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~----  237 (330)
T cd08245         162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA----  237 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence            4678999999999999999999999999988776543      1110   000  11 111235788887654221    


Q ss_pred             hccHHHHhcCCCCcEEEEcCC
Q 020073          228 MINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       228 li~~~~l~~mk~ga~lIn~sr  248 (331)
                       .....+..|+++..+|+++.
T Consensus       238 -~~~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         238 -AAEAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             -HHHHHHHhcccCCEEEEECC
Confidence             12445677888888888763

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=92.57  E-value=0.22  Score=46.57  Aligned_cols=59  Identities=22%  Similarity=0.169  Sum_probs=44.2

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC------Ccc-------ccCCHHhhhcCCCEEEEecc
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV------PYA-------FYSNVCELAANSDALIICCA  220 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~-------~~~~l~ell~~aDiV~l~~P  220 (331)
                      +++.|.| .|.||+.+++.|...|.+|++.+|+....      ...       ...++.++++.+|+|+.+..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA   73 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence            3688998 59999999999999999999988865430      111       11346677888998887764

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=92.56  E-value=0.34  Score=46.11  Aligned_cols=62  Identities=18%  Similarity=0.252  Sum_probs=43.8

Q ss_pred             ceEEEEecChHHHHHHHHHhh--CCCEEEEECCCCCC-CC-------------c--cccC-CHHhhhcCCCEEEEec--c
Q 020073          162 KRVGIVGLGNIGLQVAKRLQA--FGCNVLYNSRSKKP-VP-------------Y--AFYS-NVCELAANSDALIICC--A  220 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~--~G~~V~~~~~~~~~-~~-------------~--~~~~-~l~ell~~aDiV~l~~--P  220 (331)
                      ++|+|||.|.||+++|-.|..  ++-++..+|...+. .+             .  .... .=.+.++.||+|+++.  |
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p   80 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP   80 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence            479999999999999999854  44478889887433 00             0  0011 1147899999999998  5


Q ss_pred             CCh
Q 020073          221 LTD  223 (331)
Q Consensus       221 ~t~  223 (331)
                      ..|
T Consensus        81 rKp   83 (313)
T COG0039          81 RKP   83 (313)
T ss_pred             CCC
Confidence            554

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=92.53  E-value=0.21  Score=51.28  Aligned_cols=62  Identities=18%  Similarity=0.257  Sum_probs=46.2

Q ss_pred             CCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCC---------------C------cc-------ccCCHHhhh
Q 020073          159 LGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPV---------------P------YA-------FYSNVCELA  209 (331)
Q Consensus       159 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~---------------~------~~-------~~~~l~ell  209 (331)
                      -.|+++.|.|. |.||+.+++.|...|++|++..|+....               +      ..       ...++.+++
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL  157 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL  157 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence            46789999995 9999999999999999999888764320               0      00       112355678


Q ss_pred             cCCCEEEEecc
Q 020073          210 ANSDALIICCA  220 (331)
Q Consensus       210 ~~aDiV~l~~P  220 (331)
                      ..+|+|+.++.
T Consensus       158 ggiDiVVn~AG  168 (576)
T PLN03209        158 GNASVVICCIG  168 (576)
T ss_pred             cCCCEEEEccc
Confidence            89999998864

>PRK06196 oxidoreductase; Provisional

Probab=92.50  E-value=0.37  Score=45.45  Aligned_cols=38  Identities=26%  Similarity=0.469  Sum_probs=33.7

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .+.|+++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~   61 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD   61 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478899999995 89999999999999999999888653

>PRK15076 alpha-galactosidase; Provisional

Probab=92.48  E-value=0.13  Score=51.18  Aligned_cols=60  Identities=10%  Similarity=0.145  Sum_probs=42.0

Q ss_pred             ceEEEEecChHHHHHHH--HH---hhC-CCEEEEECCCCCC--------------CC----ccccCCHHhhhcCCCEEEE
Q 020073          162 KRVGIVGLGNIGLQVAK--RL---QAF-GCNVLYNSRSKKP--------------VP----YAFYSNVCELAANSDALII  217 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~--~l---~~~-G~~V~~~~~~~~~--------------~~----~~~~~~l~ell~~aDiV~l  217 (331)
                      .+|+|||.|++|...+-  .+   .++ |.+|+.+|...+.              .+    .....++.+++++||+|+.
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~   81 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN   81 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence            47999999999955443  22   233 4589999987543              01    1124577899999999999


Q ss_pred             eccC
Q 020073          218 CCAL  221 (331)
Q Consensus       218 ~~P~  221 (331)
                      +.-.
T Consensus        82 ti~v   85 (431)
T PRK15076         82 AIQV   85 (431)
T ss_pred             eeee
Confidence            9854

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=92.47  E-value=0.31  Score=46.72  Aligned_cols=58  Identities=17%  Similarity=0.108  Sum_probs=41.5

Q ss_pred             eEEEEec-ChHHHHHHHHHhhCCC-------EEEEECCCCCC-------C---Ccc--------ccCCHHhhhcCCCEEE
Q 020073          163 RVGIVGL-GNIGLQVAKRLQAFGC-------NVLYNSRSKKP-------V---PYA--------FYSNVCELAANSDALI  216 (331)
Q Consensus       163 ~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~~~~-------~---~~~--------~~~~l~ell~~aDiV~  216 (331)
                      +|+|||. |.+|..+|..+...|.       +++.+|+.+..       .   ...        ...+..+.+++||+|+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            5899999 9999999999876444       48888874331       0   000        0124568999999999


Q ss_pred             Eecc
Q 020073          217 ICCA  220 (331)
Q Consensus       217 l~~P  220 (331)
                      ++.-
T Consensus        81 itAG   84 (324)
T TIGR01758        81 LVGA   84 (324)
T ss_pred             EcCC
Confidence            8773

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=92.44  E-value=0.21  Score=41.61  Aligned_cols=31  Identities=32%  Similarity=0.483  Sum_probs=27.9

Q ss_pred             eEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS  193 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  193 (331)
                      +|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            58999999999999999999998 68888765

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=92.44  E-value=1.7  Score=41.87  Aligned_cols=61  Identities=10%  Similarity=0.006  Sum_probs=45.6

Q ss_pred             C-CCceEEEEecC-------hHHHHHHHHHhhCCCEEEEECC-CCCC-----C----------C--ccccCCHHhhhcCC
Q 020073          159 L-GGKRVGIVGLG-------NIGLQVAKRLQAFGCNVLYNSR-SKKP-----V----------P--YAFYSNVCELAANS  212 (331)
Q Consensus       159 l-~g~~vgIiG~G-------~IG~~~A~~l~~~G~~V~~~~~-~~~~-----~----------~--~~~~~~l~ell~~a  212 (331)
                      + .|++|+|+|.|       ++.++++..+..+|++|.+..+ ..-.     .          +  .....+++++++++
T Consensus       166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a  245 (335)
T PRK04523        166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA  245 (335)
T ss_pred             ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            5 68999877643       7888999999999999998887 3211     0          1  12347899999999


Q ss_pred             CEEEEec
Q 020073          213 DALIICC  219 (331)
Q Consensus       213 DiV~l~~  219 (331)
                      |+|..-.
T Consensus       246 Dvvy~~~  252 (335)
T PRK04523        246 DVVYAKS  252 (335)
T ss_pred             CEEEece
Confidence            9998743

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=92.44  E-value=0.29  Score=47.33  Aligned_cols=84  Identities=21%  Similarity=0.253  Sum_probs=52.7

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC------CCcc---cc--CCH----Hhhhc-CCCEEEEeccCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP------VPYA---FY--SNV----CELAA-NSDALIICCALT  222 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~------~~~~---~~--~~l----~ell~-~aDiV~l~~P~t  222 (331)
                      .|.+|.|.|.|.+|..+++.++..|+ +|++.++++.+      .+..   ..  .++    .++.. ..|+|+-++...
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~  270 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV  270 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence            47899999999999999999999999 68888776543      1111   00  111    11111 367777765322


Q ss_pred             hhhhhhccHHHHhcCCCCcEEEEcCC
Q 020073          223 DQTRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       223 ~~t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      ..    + ...++.++++..++.++-
T Consensus       271 ~~----~-~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         271 PA----L-ETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             HH----H-HHHHHHHhcCCEEEEEcc
Confidence            11    1 223556777777777653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=92.42  E-value=0.33  Score=46.62  Aligned_cols=36  Identities=17%  Similarity=0.352  Sum_probs=31.6

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCE-EEEECCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~~  195 (331)
                      .|++|.|.|.|.+|+.+++.++.+|.+ |++.+++..
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~  212 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDR  212 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence            478999999999999999999999995 888877654

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK13529 malate dehydrogenase; Provisional

Probab=92.40  E-value=2.5  Score=43.32  Aligned_cols=187  Identities=16%  Similarity=0.170  Sum_probs=117.1

Q ss_pred             CCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhh--
Q 020073          105 RGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQA--  182 (331)
Q Consensus       105 ~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~--  182 (331)
                      ..|.+.|..=   .-+|-.+++.+|+.+|-                    .|+.|...++.|+|.|.-|-.+|+.+..  
T Consensus       262 ~~i~~FnDDi---QGTaaV~LAgll~A~r~--------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~  318 (563)
T PRK13529        262 DEICTFNDDI---QGTGAVTLAGLLAALKI--------------------TGEPLSDQRIVFLGAGSAGCGIADQIVAAM  318 (563)
T ss_pred             cCCCeecccc---chHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECCCHHHHHHHHHHHHHH
Confidence            3566666532   23566677777776663                    2456889999999999999999999875  


Q ss_pred             --CCC-------EEEEECCCCC------CC---------Ccc---------ccCCHHhhhcCC--CEEEEeccCChhhhh
Q 020073          183 --FGC-------NVLYNSRSKK------PV---------PYA---------FYSNVCELAANS--DALIICCALTDQTRR  227 (331)
Q Consensus       183 --~G~-------~V~~~~~~~~------~~---------~~~---------~~~~l~ell~~a--DiV~l~~P~t~~t~~  227 (331)
                        .|.       +++.+|+..-      ..         ...         ...+|.|+++.+  |+++-+-    ..-+
T Consensus       319 ~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S----~~~g  394 (563)
T PRK13529        319 VREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVS----GQPG  394 (563)
T ss_pred             HHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEec----CCCC
Confidence              577       7888886521      00         000         114789999888  9888642    2347


Q ss_pred             hccHHHHhcCCC---CcEEEEcCCCCccCHHHHHHHHH--hCC-ceEEEeecCCCCCCCCC----ccccCCceEEcCCCC
Q 020073          228 MINREVMLALGK---EGIIVNVGRGAVIDENEMVRCLV--RGE-IAGAGLDVFENEPYVPK----ELLELDNVVLQPHRA  297 (331)
Q Consensus       228 li~~~~l~~mk~---ga~lIn~srg~~vd~~al~~aL~--~~~-i~ga~lDV~~~EP~~~~----~L~~~~nvilTPH~a  297 (331)
                      .++++.++.|.+   ..++.=.|...--.|-.-.+|.+  +|+ |.+.|.- |  .|..-+    ..=...|+++-|=++
T Consensus       395 ~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGsp-f--~pv~~~G~~~~p~Q~NN~~iFPGig  471 (563)
T PRK13529        395 AFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSP-F--APVEYNGKTYPIGQCNNAYIFPGLG  471 (563)
T ss_pred             CCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCC-C--CCeeeCCeEeccCcCcceeecccch
Confidence            899999999976   78999888877644444444444  354 5433331 1  111001    112345888888776


Q ss_pred             CCcH-----HHHHHHHHHHHHHHHHHHcC
Q 020073          298 VFTS-----ECFVDLCELAVGNLEALFSN  321 (331)
Q Consensus       298 ~~t~-----~~~~~~~~~~~~nl~~~~~g  321 (331)
                      -...     .--+.|...+++-|.++..-
T Consensus       472 lGa~~~~a~~Itd~m~~aAA~alA~~v~~  500 (563)
T PRK13529        472 LGVIASGARRVTDGMLMAAAHALADCVPL  500 (563)
T ss_pred             hhhhhcCCcCCCHHHHHHHHHHHHhhCcc
Confidence            4322     22356666666666665543

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=92.40  E-value=0.3  Score=46.87  Aligned_cols=36  Identities=28%  Similarity=0.227  Sum_probs=32.1

Q ss_pred             CCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          159 LGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       159 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      +++++|.|.| .|-||+.+++.|...|.+|+++++..
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~   49 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS   49 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            6779999999 59999999999999999999998743

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.37  E-value=0.22  Score=49.61  Aligned_cols=107  Identities=17%  Similarity=0.269  Sum_probs=70.7

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----C-----Ccccc-CC-HHhhhcCCCEEEEeccC---Ch
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----V-----PYAFY-SN-VCELAANSDALIICCAL---TD  223 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~-----~~~~~-~~-l~ell~~aDiV~l~~P~---t~  223 (331)
                      +.++++.|+|.|.+|.++|+.|...|++|.++|.....     .     +.... .. -+..+.++|+|+..--.   .+
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p   82 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP   82 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence            56899999999999999999999999999999875432     0     11111 11 22345679988876422   22


Q ss_pred             hhhh-------hcc-HHHHhc-CC---CCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073          224 QTRR-------MIN-REVMLA-LG---KEGIIVNVGRGAVIDENEMVRCLVRGE  265 (331)
Q Consensus       224 ~t~~-------li~-~~~l~~-mk---~ga~lIn~srg~~vd~~al~~aL~~~~  265 (331)
                      ....       +++ .+.+.. ++   ...+-|--+-|+.-...-+...|+...
T Consensus        83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g  136 (445)
T PRK04308         83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCG  136 (445)
T ss_pred             HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence            2211       222 223333 22   246788888999988888888887644

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=92.33  E-value=0.51  Score=45.65  Aligned_cols=81  Identities=12%  Similarity=0.119  Sum_probs=49.6

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCC-CEEEEECCCCCC----CC----cc------------cc--CCHHhhhcCCCEEEE
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFG-CNVLYNSRSKKP----VP----YA------------FY--SNVCELAANSDALII  217 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~~~~~~~----~~----~~------------~~--~~l~ell~~aDiV~l  217 (331)
                      .+|+|+| .|.+|+.+++.|.... +++.++.++...    ..    ..            ..  .+.+ .+.++|+|+.
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~DvVf~   82 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPE-AVDDVDIVFS   82 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHH-HhcCCCEEEE
Confidence            6899998 8999999999998653 477766332211    11    10            00  1233 3478999999


Q ss_pred             eccCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 020073          218 CCALTDQTRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       218 ~~P~t~~t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      ++|.... ..+. + .+  .+.|..+|+.+-
T Consensus        83 a~p~~~s-~~~~-~-~~--~~~G~~vIDls~  108 (349)
T PRK08664         83 ALPSDVA-GEVE-E-EF--AKAGKPVFSNAS  108 (349)
T ss_pred             eCChhHH-HHHH-H-HH--HHCCCEEEECCc
Confidence            9986532 2232 1 12  145676777653

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=92.31  E-value=0.88  Score=42.86  Aligned_cols=37  Identities=35%  Similarity=0.513  Sum_probs=32.6

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS  193 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  193 (331)
                      ..|.+.+|.|+|+|.+|.++|+.|...|. +|..+|..
T Consensus        15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d   52 (286)
T cd01491          15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTK   52 (286)
T ss_pred             HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            35889999999999999999999999898 68887754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK06114 short chain dehydrogenase; Provisional

Probab=92.30  E-value=0.46  Score=43.06  Aligned_cols=37  Identities=24%  Similarity=0.294  Sum_probs=33.1

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      ++.|+++.|.| .|.||+++|+.|...|++|++.+++.
T Consensus         5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~   42 (254)
T PRK06114          5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRT   42 (254)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence            47899999999 67999999999999999999988764

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=92.28  E-value=0.37  Score=45.63  Aligned_cols=36  Identities=22%  Similarity=0.386  Sum_probs=32.1

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .|.+|.|.|.|.+|+.+++.++.+|.+|++.+++..
T Consensus       163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~  198 (333)
T cd08296         163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSD  198 (333)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChH
Confidence            478999999999999999999999999988877643

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=92.27  E-value=0.27  Score=47.67  Aligned_cols=56  Identities=21%  Similarity=0.281  Sum_probs=41.2

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCCC-----c---cccCC---HHhhhc--CCCEEEEe
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVP-----Y---AFYSN---VCELAA--NSDALIIC  218 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-----~---~~~~~---l~ell~--~aDiV~l~  218 (331)
                      +|+|||.|..|..+++.++.+|++|++++.++....     .   ....+   +.++++  +.|.|+..
T Consensus         1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~   69 (380)
T TIGR01142         1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPE   69 (380)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEec
Confidence            589999999999999999999999999988764411     0   01223   445555  68888754

This enzyme is an alternative to PurN (TIGR00639)

>PRK05884 short chain dehydrogenase; Provisional

Probab=92.25  E-value=0.4  Score=42.87  Aligned_cols=33  Identities=18%  Similarity=0.266  Sum_probs=28.6

Q ss_pred             eEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          163 RVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       163 ~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      ++.|.|. |.||+++|+.+...|++|+..+|+.+
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~   35 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRD   35 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5788885 89999999999999999999888643

>PLN02427 UDP-apiose/xylose synthase

Probab=92.25  E-value=0.34  Score=47.03  Aligned_cols=64  Identities=19%  Similarity=0.145  Sum_probs=47.0

Q ss_pred             CccCCCceEEEEe-cChHHHHHHHHHhhC-CCEEEEECCCCCC------C-------Ccc-------ccCCHHhhhcCCC
Q 020073          156 GSKLGGKRVGIVG-LGNIGLQVAKRLQAF-GCNVLYNSRSKKP------V-------PYA-------FYSNVCELAANSD  213 (331)
Q Consensus       156 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~~~~~~~------~-------~~~-------~~~~l~ell~~aD  213 (331)
                      |+.++.++|.|.| .|-||+.+++.|... |.+|++++++...      .       ...       ...++.++++++|
T Consensus         9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d   88 (386)
T PLN02427          9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD   88 (386)
T ss_pred             CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence            6677888999999 699999999999987 5899988875421      0       010       1124567788899


Q ss_pred             EEEEec
Q 020073          214 ALIICC  219 (331)
Q Consensus       214 iV~l~~  219 (331)
                      +|+-+.
T Consensus        89 ~ViHlA   94 (386)
T PLN02427         89 LTINLA   94 (386)
T ss_pred             EEEEcc
Confidence            877655

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=92.21  E-value=0.39  Score=45.75  Aligned_cols=87  Identities=14%  Similarity=0.185  Sum_probs=56.7

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhCCC--EEEEECCCCCC--------CC---cccc-----CCHHhhhcCCCEEEEeccC-
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAFGC--NVLYNSRSKKP--------VP---YAFY-----SNVCELAANSDALIICCAL-  221 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~~~--------~~---~~~~-----~~l~ell~~aDiV~l~~P~-  221 (331)
                      .+|+|||. |.+|..+|-.+...|.  ++..+|.. ..        ..   ....     .++.+.+++||+|+++.-. 
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~   79 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP   79 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence            37999999 9999999999987665  78888876 32        01   1111     2346889999999998732 


Q ss_pred             -Ch-hhhh-hc--cHH-------HHhcCCCCcEEEEcCCC
Q 020073          222 -TD-QTRR-MI--NRE-------VMLALGKEGIIVNVGRG  249 (331)
Q Consensus       222 -t~-~t~~-li--~~~-------~l~~mk~ga~lIn~srg  249 (331)
                       .+ +++- ++  |.+       .+..-.|.+++|+++-.
T Consensus        80 ~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP  119 (310)
T cd01337          80 RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP  119 (310)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence             22 2221 11  222       23334688999999743

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=92.18  E-value=0.33  Score=46.39  Aligned_cols=36  Identities=22%  Similarity=0.357  Sum_probs=32.2

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .|.+|.|+|.|.+|..+++.++..|.+|++.++++.
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~  201 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPE  201 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHH
Confidence            478999999999999999999999999988877654

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=92.17  E-value=0.15  Score=47.71  Aligned_cols=58  Identities=31%  Similarity=0.410  Sum_probs=39.9

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcC--CCEEEEeccC
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAAN--SDALIICCAL  221 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l~~P~  221 (331)
                      ++|.|+| -|.+|+.+.+.++..|.+|+.+++..-.  ......+.+++.+  .|+|+.|.-.
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~d--l~d~~~~~~~~~~~~pd~Vin~aa~   61 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGYEVIATSRSDLD--LTDPEAVAKLLEAFKPDVVINCAAY   61 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS---TTSHHHHHHHHHHH--SEEEE----
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcC--CCCHHHHHHHHHHhCCCeEecccee
Confidence            4799999 6999999999999999999999776322  2222345555543  8999988644

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK07806 short chain dehydrogenase; Provisional

Probab=92.14  E-value=0.34  Score=43.51  Aligned_cols=37  Identities=38%  Similarity=0.479  Sum_probs=32.4

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      .+.|+++.|.|. |.||+.+++.|...|++|++.+|+.
T Consensus         3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~   40 (248)
T PRK07806          3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK   40 (248)
T ss_pred             CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence            367899999995 9999999999999999998887754

>PRK07825 short chain dehydrogenase; Provisional

Probab=92.08  E-value=0.43  Score=43.66  Aligned_cols=37  Identities=38%  Similarity=0.516  Sum_probs=32.5

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      ++.|+++.|.|. |.||+.+|+.|...|++|+..+|+.
T Consensus         2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~   39 (273)
T PRK07825          2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDE   39 (273)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence            367899999995 9999999999999999999888764

>PRK08589 short chain dehydrogenase; Validated

Probab=92.04  E-value=0.39  Score=44.13  Aligned_cols=36  Identities=31%  Similarity=0.262  Sum_probs=32.7

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCC
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRS  193 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~  193 (331)
                      .+.||++.|.|. |.||+++|+.|...|++|++.+|+
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~   39 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA   39 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            477999999996 889999999999999999998876

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=92.04  E-value=0.39  Score=45.37  Aligned_cols=60  Identities=22%  Similarity=0.260  Sum_probs=47.2

Q ss_pred             CCCceEEEEe---cChHHHHHHHHHhhCCCEEEEECCCCCC-----------CC-c-cccCCHHhhhcCCCEEEEe
Q 020073          159 LGGKRVGIVG---LGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------VP-Y-AFYSNVCELAANSDALIIC  218 (331)
Q Consensus       159 l~g~~vgIiG---~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------~~-~-~~~~~l~ell~~aDiV~l~  218 (331)
                      +.|++|+|+|   +|+..++.++.|..||.+|..+.+..-.           .+ . ..+...++.+.++|++.+.
T Consensus       156 ~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~l  231 (316)
T COG0540         156 LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYML  231 (316)
T ss_pred             cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEee
Confidence            8899999999   9999999999999999999999875321           11 1 2234455599999988653

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=92.03  E-value=0.48  Score=46.58  Aligned_cols=61  Identities=20%  Similarity=0.177  Sum_probs=51.0

Q ss_pred             CCCceEEEEecC----------hHHHHHHHHHhhCCCEEEEECCCCCC---CCccccCCHHhhhcCCCEEEEec
Q 020073          159 LGGKRVGIVGLG----------NIGLQVAKRLQAFGCNVLYNSRSKKP---VPYAFYSNVCELAANSDALIICC  219 (331)
Q Consensus       159 l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~~~~~~~---~~~~~~~~l~ell~~aDiV~l~~  219 (331)
                      ..|++|+|+|+.          +-+..+++.|...|.+|.+||+....   .+.....++.++++.||.|++..
T Consensus       294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (388)
T PRK15057        294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSFFNSRLERDLATFKQQADVIISNR  367 (388)
T ss_pred             hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchhhcCCeeeCCHHHHHHhCCEEEEcC
Confidence            368999999983          67789999999999999999997544   23445679999999999999875

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=92.01  E-value=0.92  Score=41.43  Aligned_cols=36  Identities=22%  Similarity=0.463  Sum_probs=32.0

Q ss_pred             cCCCceEEEEec---ChHHHHHHHHHhhCCCEEEEECCC
Q 020073          158 KLGGKRVGIVGL---GNIGLQVAKRLQAFGCNVLYNSRS  193 (331)
Q Consensus       158 ~l~g~~vgIiG~---G~IG~~~A~~l~~~G~~V~~~~~~  193 (331)
                      .+.||++.|.|.   +.||+++|+.|...|++|+..+|+
T Consensus         4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~   42 (257)
T PRK08594          4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG   42 (257)
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence            477999999997   589999999999999999887764

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=92.00  E-value=0.33  Score=44.70  Aligned_cols=57  Identities=23%  Similarity=0.241  Sum_probs=42.7

Q ss_pred             eEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCC--CEEEEeccC
Q 020073          163 RVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANS--DALIICCAL  221 (331)
Q Consensus       163 ~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~a--DiV~l~~P~  221 (331)
                      +|.|+| .|.||+.+++.|...|.+|++.+|....  .....++.+++...  |+|+.+...
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~d--~~~~~~~~~~~~~~~~d~vi~~a~~   60 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQLD--LTDPEALERLLRAIRPDAVVNTAAY   60 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCcccC--CCCHHHHHHHHHhCCCCEEEECCcc
Confidence            478899 5999999999999999999998886322  12234566777765  998877643

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=91.99  E-value=0.4  Score=52.50  Aligned_cols=64  Identities=31%  Similarity=0.402  Sum_probs=52.4

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC---------------------------CCc--------cccC
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP---------------------------VPY--------AFYS  203 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---------------------------~~~--------~~~~  203 (331)
                      -.|++|+|||-|.-|-+.|..|-..|..|++|.|+.+.                           .+.        ....
T Consensus      1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~v 1862 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHV 1862 (2142)
T ss_pred             ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccc
Confidence            47999999999999999999999999999999887643                           011        1125


Q ss_pred             CHHhhhcCCCEEEEeccCC
Q 020073          204 NVCELAANSDALIICCALT  222 (331)
Q Consensus       204 ~l~ell~~aDiV~l~~P~t  222 (331)
                      ++|++.++-|.|++|.-.|
T Consensus      1863 s~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1863 SLDELKKENDAIVLATGST 1881 (2142)
T ss_pred             cHHHHhhccCeEEEEeCCC
Confidence            8999999999999997544

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=91.97  E-value=0.36  Score=46.19  Aligned_cols=37  Identities=27%  Similarity=0.275  Sum_probs=32.4

Q ss_pred             CCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          159 LGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       159 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      ++|+++.|.| .|-||+.+++.|...|.+|++.+|...
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~   39 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP   39 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence            4688999999 599999999999999999999887654

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=91.97  E-value=0.49  Score=43.24  Aligned_cols=36  Identities=25%  Similarity=0.391  Sum_probs=30.8

Q ss_pred             cCCCceEEEEec---ChHHHHHHHHHhhCCCEEEEECCC
Q 020073          158 KLGGKRVGIVGL---GNIGLQVAKRLQAFGCNVLYNSRS  193 (331)
Q Consensus       158 ~l~g~~vgIiG~---G~IG~~~A~~l~~~G~~V~~~~~~  193 (331)
                      ++.||++.|.|.   +.||+++|+.+...|++|+...+.
T Consensus         3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~   41 (258)
T PRK07370          3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLP   41 (258)
T ss_pred             ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence            467999999997   489999999999999999776543

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=91.95  E-value=0.2  Score=44.46  Aligned_cols=37  Identities=30%  Similarity=0.467  Sum_probs=32.1

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS  193 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  193 (331)
                      +.|++++|.|||+|.+|.++|+.|...|. ++..+|..
T Consensus        15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            35889999999999999999999999898 57777654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=91.93  E-value=0.2  Score=49.53  Aligned_cols=30  Identities=27%  Similarity=0.402  Sum_probs=26.3

Q ss_pred             ceEEEEecChHHHHHHHHHhh-CCCEEEEEC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQA-FGCNVLYNS  191 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~-~G~~V~~~~  191 (331)
                      .+|||.|||+||+.++|.+.. ++++|++.+
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaIN  116 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVN  116 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEec
Confidence            589999999999999999875 789988744

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=91.90  E-value=0.7  Score=43.64  Aligned_cols=87  Identities=17%  Similarity=0.207  Sum_probs=55.5

Q ss_pred             eEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------CC-----------------c--cc----cCC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------VP-----------------Y--AF----YSN  204 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~~-----------------~--~~----~~~  204 (331)
                      +|.|||+|.+|.++++.|...|+ ++.+.|...-.              .+                 .  ..    ..+
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~   80 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD   80 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence            58999999999999999998888 67776632100              00                 0  00    011


Q ss_pred             -HHhhhcCCCEEEEeccCChhhhhhccHHHHhcC-----CCCcEEEEcCCCC
Q 020073          205 -VCELAANSDALIICCALTDQTRRMINREVMLAL-----GKEGIIVNVGRGA  250 (331)
Q Consensus       205 -l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~m-----k~ga~lIn~srg~  250 (331)
                       -.+.+++.|+|+.++- +.+++..+++......     +.+.-+|..+-.+
T Consensus        81 ~~~~f~~~fdvVi~alD-n~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G  131 (291)
T cd01488          81 KDEEFYRQFNIIICGLD-SIEARRWINGTLVSLLLYEDPESIIPLIDGGTEG  131 (291)
T ss_pred             hhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhccccccccCccEEEEEEcc
Confidence             2467888999988875 4567777777655443     2234566665443

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK12367 short chain dehydrogenase; Provisional

Probab=91.89  E-value=0.37  Score=44.03  Aligned_cols=63  Identities=29%  Similarity=0.358  Sum_probs=46.5

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC-----C-C-c-------cccCCHHhhhcCCCEEEEecc
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP-----V-P-Y-------AFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~-~-~-------~~~~~l~ell~~aDiV~l~~P  220 (331)
                      .+.|+++.|.|. |.||+++|+.+...|++|++.+|+...     . . .       ....++.+.+...|+++.+.-
T Consensus        11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG   88 (245)
T PRK12367         11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHG   88 (245)
T ss_pred             hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCc
Confidence            578999999995 789999999999999999988876511     0 0 0       011234556778999998863

>PRK08862 short chain dehydrogenase; Provisional

Probab=91.86  E-value=0.38  Score=43.27  Aligned_cols=38  Identities=11%  Similarity=0.295  Sum_probs=33.1

Q ss_pred             cCCCceEEEEecC-hHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVGLG-NIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      +++|+++.|.|.+ .||+++|+.|...|++|+..+|+..
T Consensus         2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (227)
T PRK08862          2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS   40 (227)
T ss_pred             CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4689999999965 4999999999999999999988654

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=91.78  E-value=0.47  Score=45.22  Aligned_cols=84  Identities=24%  Similarity=0.320  Sum_probs=55.4

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC------CCcc---cc--CC----HHhhhc--CCCEEEEeccC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP------VPYA---FY--SN----VCELAA--NSDALIICCAL  221 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~------~~~~---~~--~~----l~ell~--~aDiV~l~~P~  221 (331)
                      .|+++.|.|.|.+|+.+++.++..|+ +|++.+++..+      .+..   ..  .+    +.++..  ..|+|+-+...
T Consensus       172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~  251 (351)
T cd08233         172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGV  251 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCC
Confidence            47899999999999999999999999 78888765433      1110   00  11    223332  37888877642


Q ss_pred             ChhhhhhccHHHHhcCCCCcEEEEcCC
Q 020073          222 TDQTRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       222 t~~t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      ...    + ...+..+++++.++.++.
T Consensus       252 ~~~----~-~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         252 QAT----L-DTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             HHH----H-HHHHHhccCCCEEEEEcc
Confidence            221    1 344566888888888764

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.71  E-value=0.55  Score=43.19  Aligned_cols=35  Identities=23%  Similarity=0.521  Sum_probs=31.6

Q ss_pred             CCCceEEEEecC---hHHHHHHHHHhhCCCEEEEECCC
Q 020073          159 LGGKRVGIVGLG---NIGLQVAKRLQAFGCNVLYNSRS  193 (331)
Q Consensus       159 l~g~~vgIiG~G---~IG~~~A~~l~~~G~~V~~~~~~  193 (331)
                      +.||++.|.|.+   .||+++|+.|...|++|+..+++
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~   41 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN   41 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence            679999999987   59999999999999999887765

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=91.71  E-value=5.4  Score=41.16  Aligned_cols=186  Identities=18%  Similarity=0.163  Sum_probs=114.4

Q ss_pred             CCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhh--
Q 020073          105 RGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQA--  182 (331)
Q Consensus       105 ~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~--  182 (331)
                      ..|.+.|..=   .-+|-.+++.+|+.+|-                    .+++|...++.|+|.|.-|-.+|+.+..  
T Consensus       288 ~~i~~FnDDi---QGTaaV~lAgll~A~r~--------------------~g~~l~d~riv~~GAGsAgigia~ll~~~~  344 (581)
T PLN03129        288 TTHLCFNDDI---QGTAAVALAGLLAALRA--------------------TGGDLADQRILFAGAGEAGTGIAELIALAM  344 (581)
T ss_pred             cCCCEecccc---chHHHHHHHHHHHHHHH--------------------hCCchhhceEEEECCCHHHHHHHHHHHHHH
Confidence            3566666522   24566677777776663                    2456889999999999999999999876  


Q ss_pred             ---CCC-------EEEEECCCCC----CC------------CccccCCHHhhhcC--CCEEEEeccCChhhhhhccHHHH
Q 020073          183 ---FGC-------NVLYNSRSKK----PV------------PYAFYSNVCELAAN--SDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       183 ---~G~-------~V~~~~~~~~----~~------------~~~~~~~l~ell~~--aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                         .|.       +|+.+|+..-    ..            ......+|.|+++.  +|+++-+-    ..-+.++++.+
T Consensus       345 ~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi  420 (581)
T PLN03129        345 SRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLS----GVGGTFTKEVL  420 (581)
T ss_pred             HhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEec----CCCCCCCHHHH
Confidence               466       7888876531    00            01123589999999  89888652    12378999999


Q ss_pred             hcCC---CCcEEEEcCCCCccCHHHHHHHHH--hCC-ceEEEeecCCCCCCCCC----ccccCCceEEcCCCCCCcH---
Q 020073          235 LALG---KEGIIVNVGRGAVIDENEMVRCLV--RGE-IAGAGLDVFENEPYVPK----ELLELDNVVLQPHRAVFTS---  301 (331)
Q Consensus       235 ~~mk---~ga~lIn~srg~~vd~~al~~aL~--~~~-i~ga~lDV~~~EP~~~~----~L~~~~nvilTPH~a~~t~---  301 (331)
                      +.|.   +..++.=.|...---|-.-.+|.+  +|+ |.+.|. =|  +|..-+    ..=...|+++-|=++-...   
T Consensus       421 ~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtGS-Pf--~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~  497 (581)
T PLN03129        421 EAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGS-PF--DPVEYNGKTFHPGQANNAYIFPGIGLGALLSG  497 (581)
T ss_pred             HHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeCC-CC--CCeeeCCeeecCccccceeeccchhhHHHhcC
Confidence            9995   778888887765333322233333  255 543332 00  111001    1123458888888764322   


Q ss_pred             --HHHHHHHHHHHHHHHHHHc
Q 020073          302 --ECFVDLCELAVGNLEALFS  320 (331)
Q Consensus       302 --~~~~~~~~~~~~nl~~~~~  320 (331)
                        .--+.|...+++-|..+..
T Consensus       498 a~~Itd~m~~aAA~aLA~~v~  518 (581)
T PLN03129        498 AIRVTDDMLLAAAEALAAQVT  518 (581)
T ss_pred             CcCCCHHHHHHHHHHHHHhCC
Confidence              2235666666666666554

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=91.63  E-value=0.57  Score=44.09  Aligned_cols=61  Identities=20%  Similarity=0.156  Sum_probs=44.2

Q ss_pred             CCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC---------------------CccccCCHHhhhcCCCEEEE
Q 020073          160 GGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV---------------------PYAFYSNVCELAANSDALII  217 (331)
Q Consensus       160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~---------------------~~~~~~~l~ell~~aDiV~l  217 (331)
                      .|+++.|.| .|-||+.+++.|...|++|++..++....                     +.....+++++++..|+|+.
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih   83 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH   83 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence            378999999 59999999999999999998765543210                     00112346677888998887


Q ss_pred             ecc
Q 020073          218 CCA  220 (331)
Q Consensus       218 ~~P  220 (331)
                      +..
T Consensus        84 ~A~   86 (325)
T PLN02989         84 TAS   86 (325)
T ss_pred             eCC
Confidence            763

>PRK14852 hypothetical protein; Provisional

Probab=91.63  E-value=0.49  Score=51.44  Aligned_cols=157  Identities=15%  Similarity=0.102  Sum_probs=89.9

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------C-------------------Ccc---
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------V-------------------PYA---  200 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~-------------------~~~---  200 (331)
                      .|++++|+|||+|.+|..+|+.|...|. ++...|...-.              .                   ...   
T Consensus       329 kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~  408 (989)
T PRK14852        329 RLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFP  408 (989)
T ss_pred             HHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEe
Confidence            5899999999999999999999998888 56655432100              0                   000   


Q ss_pred             ---ccCCHHhhhcCCCEEEEeccCC-hhhhhhccHHHHhcCCCCcEEEEcCCCC------------ccCHHHHHHH----
Q 020073          201 ---FYSNVCELAANSDALIICCALT-DQTRRMINREVMLALGKEGIIVNVGRGA------------VIDENEMVRC----  260 (331)
Q Consensus       201 ---~~~~l~ell~~aDiV~l~~P~t-~~t~~li~~~~l~~mk~ga~lIn~srg~------------~vd~~al~~a----  260 (331)
                         ...+++++++.+|+|+-|+-.- -+.+..+...-.   +.+.-+|..+-.+            ...++- .+.    
T Consensus       409 ~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~---~~~IP~I~ag~~G~~g~v~v~~p~~~~~~~~-f~~~~~~  484 (989)
T PRK14852        409 EGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRAL---ELGIPVITAGPLGYSCALLVFMPGGMNFDSY-FGIDDDT  484 (989)
T ss_pred             cCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHH---HcCCCEEEeeccccCeeEEEEcCCCCCHHHh-CCCCCCC
Confidence               1135778889999999887541 123333333322   3333444443311            111100 000    


Q ss_pred             -HHhCCceEEEeecCCCCCCCCC-ccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 020073          261 -LVRGEIAGAGLDVFENEPYVPK-ELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQ  322 (331)
Q Consensus       261 -L~~~~i~ga~lDV~~~EP~~~~-~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~  322 (331)
                       ...|-++ .++   ...|.+-. ...+..+|-+.=+.+-++..+..-.+-.++....+++-|+
T Consensus       485 p~~~~~~~-~~l---~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~  544 (989)
T PRK14852        485 PPMEGYLR-FGM---GLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHR  544 (989)
T ss_pred             chHhhhhh-hhc---cCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCC
Confidence             0001111 111   22222111 3346667767667788888888888889999999999887

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=91.60  E-value=0.34  Score=44.10  Aligned_cols=39  Identities=33%  Similarity=0.433  Sum_probs=34.1

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      .+.|+++.|.| .|.||+++|+.|...|++|+..+++...
T Consensus         6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~   45 (266)
T PRK06171          6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGD   45 (266)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            47899999999 6899999999999999999988876543

>PRK10537 voltage-gated potassium channel; Provisional

Probab=91.60  E-value=0.47  Score=46.74  Aligned_cols=67  Identities=12%  Similarity=-0.053  Sum_probs=44.5

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----CCc-------cccCCHHh-hhcCCCEEEEeccCChhhhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----VPY-------AFYSNVCE-LAANSDALIICCALTDQTRR  227 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~~~-------~~~~~l~e-ll~~aDiV~l~~P~t~~t~~  227 (331)
                      ...+.|+|+|.+|+.+++.|+..|.++++.+.....    .+.       ...+.|++ -+++|+.|+.+++.+.++..
T Consensus       240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~  318 (393)
T PRK10537        240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAF  318 (393)
T ss_pred             CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHH
Confidence            457999999999999999999989888777643211    111       00112333 25678888888776554443

>PRK05865 hypothetical protein; Provisional

Probab=91.60  E-value=0.84  Score=49.30  Aligned_cols=89  Identities=20%  Similarity=0.281  Sum_probs=56.2

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC---CCc-------cccCCHHhhhcCCCEEEEeccCChhh--hhh
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP---VPY-------AFYSNVCELAANSDALIICCALTDQT--RRM  228 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~---~~~-------~~~~~l~ell~~aDiV~l~~P~t~~t--~~l  228 (331)
                      ++|.|.| .|.||+.+++.|...|.+|++++++...   ...       ....++.++++.+|+|+.+.......  .++
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~~~~vNv   80 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSWPSSADFIAADIRDATAVESAMTGADVVAHCAWVRGRNDHINI   80 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhcccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccchHHHHH
Confidence            3689999 5999999999999999999998876422   111       11234667788999988876432110  011


Q ss_pred             c-cHHHHhcCCCC--cEEEEcCCCC
Q 020073          229 I-NREVMLALGKE--GIIVNVGRGA  250 (331)
Q Consensus       229 i-~~~~l~~mk~g--a~lIn~srg~  250 (331)
                      . ....++.|+..  ..+|.+|.+.
T Consensus        81 ~GT~nLLeAa~~~gvkr~V~iSS~~  105 (854)
T PRK05865         81 DGTANVLKAMAETGTGRIVFTSSGH  105 (854)
T ss_pred             HHHHHHHHHHHHcCCCeEEEECCcH
Confidence            1 12233444322  3688888764

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=91.58  E-value=0.35  Score=46.16  Aligned_cols=31  Identities=29%  Similarity=0.337  Sum_probs=27.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhCC--CEEEEECC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFG--CNVLYNSR  192 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~  192 (331)
                      -+|||=|||+||+.+++.+...+  ++|++.+.
T Consensus         2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd   34 (335)
T COG0057           2 IKVAINGFGRIGRLVARAALERDGDIEVVAIND   34 (335)
T ss_pred             cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEec
Confidence            37999999999999999998764  89988765

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=91.53  E-value=0.95  Score=43.63  Aligned_cols=81  Identities=11%  Similarity=0.122  Sum_probs=48.6

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCCC---EEEEECCCC--CC-C---Cc-cccCCHH-hhhcCCCEEEEeccCChhhhhhc
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFGC---NVLYNSRSK--KP-V---PY-AFYSNVC-ELAANSDALIICCALTDQTRRMI  229 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G~---~V~~~~~~~--~~-~---~~-~~~~~l~-ell~~aDiV~l~~P~t~~t~~li  229 (331)
                      .+|+|+| .|.+|+++.+.|...++   ++.+.....  .+ .   +. ....+++ +.++++|+|++++|.. ....++
T Consensus         5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~~~~vD~vFla~p~~-~s~~~v   83 (336)
T PRK05671          5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFDFSQVQLAFFAAGAA-VSRSFA   83 (336)
T ss_pred             CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHHhcCCCEEEEcCCHH-HHHHHH
Confidence            5799999 59999999999995444   333332221  11 1   10 1112222 2258899999999943 333333


Q ss_pred             cHHHHhcCCCCcEEEEcC
Q 020073          230 NREVMLALGKEGIIVNVG  247 (331)
Q Consensus       230 ~~~~l~~mk~ga~lIn~s  247 (331)
                      .+ .   .+.|..+||.|
T Consensus        84 ~~-~---~~~G~~VIDlS   97 (336)
T PRK05671         84 EK-A---RAAGCSVIDLS   97 (336)
T ss_pred             HH-H---HHCCCeEEECc
Confidence            21 1   25688999988

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=91.49  E-value=0.34  Score=47.92  Aligned_cols=62  Identities=29%  Similarity=0.449  Sum_probs=46.5

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC----C-----Cc-------cccCCHHhhhcCCCEEEEec
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP----V-----PY-------AFYSNVCELAANSDALIICC  219 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~----~-----~~-------~~~~~l~ell~~aDiV~l~~  219 (331)
                      .++||++.|.|. |.||+++|+.+...|++|+..+++.+.    .     ..       ....++.+.+.+.|+++.+.
T Consensus       175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA  253 (406)
T PRK07424        175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH  253 (406)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence            578999999995 999999999999999999988876432    0     00       01123556678899998865

>PRK06179 short chain dehydrogenase; Provisional

Probab=91.35  E-value=0.29  Score=44.75  Aligned_cols=36  Identities=28%  Similarity=0.340  Sum_probs=31.3

Q ss_pred             CCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          160 GGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .++++.|.| .|.||+++|+.|...|++|++.+|+..
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~   39 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPA   39 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            357888999 699999999999999999999988754

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=91.32  E-value=0.62  Score=42.39  Aligned_cols=36  Identities=28%  Similarity=0.360  Sum_probs=32.2

Q ss_pred             CCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          159 LGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       159 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      +.|+++.|.|. |.||+++|+.|...|++|++.+|+.
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   39 (262)
T TIGR03325         3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSA   39 (262)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            67899999995 7899999999999999999988764

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.31  E-value=0.72  Score=42.08  Aligned_cols=37  Identities=27%  Similarity=0.438  Sum_probs=32.7

Q ss_pred             cCCCceEEEEecC---hHHHHHHHHHhhCCCEEEEECCCC
Q 020073          158 KLGGKRVGIVGLG---NIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       158 ~l~g~~vgIiG~G---~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      ++.||++.|.|.+   .||+++|+.|...|++|+..+|+.
T Consensus         7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~   46 (258)
T PRK07533          7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND   46 (258)
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence            4789999999976   799999999999999998887764

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=91.31  E-value=0.67  Score=42.17  Aligned_cols=97  Identities=23%  Similarity=0.409  Sum_probs=65.5

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCCh--hhhhhccHHHH
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTD--QTRRMINREVM  234 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~--~t~~li~~~~l  234 (331)
                      ++.||.+.++| +|.||.++++.|...|..+.+.+.+.+.  ......|++..+.--+++.-|-.+.  +++..+ ++.+
T Consensus         2 ~~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En--~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f-~ki~   78 (261)
T KOG4169|consen    2 DLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEEN--PEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAF-DKIL   78 (261)
T ss_pred             cccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhC--HHHHHHHhccCCCceEEEEEeccccHHHHHHHH-HHHH
Confidence            46799998887 9999999999999999988887765543  1122346666666666666665543  333333 4567


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVR  259 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~  259 (331)
                      +.|+.=-++||.+  ++.|+.+..+
T Consensus        79 ~~fg~iDIlINgA--Gi~~dkd~e~  101 (261)
T KOG4169|consen   79 ATFGTIDILINGA--GILDDKDWER  101 (261)
T ss_pred             HHhCceEEEEccc--ccccchhHHH
Confidence            7777767788864  5555555433

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=91.27  E-value=0.49  Score=44.45  Aligned_cols=86  Identities=19%  Similarity=0.188  Sum_probs=53.8

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCE-EEEECCCCCC------CCcc---cc--CCHH--h--hhcCCCEEEEeccCCh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSKKP------VPYA---FY--SNVC--E--LAANSDALIICCALTD  223 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~~~------~~~~---~~--~~l~--e--ll~~aDiV~l~~P~t~  223 (331)
                      .|.++.|+|.|.+|+.+++.++..|++ |.+.+++.+.      .+..   ..  .+..  .  .-...|+++-+.+...
T Consensus       159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~~  238 (334)
T cd08234         159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVPK  238 (334)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCChH
Confidence            468999999999999999999999997 7777765432      0110   00  0110  1  1234787777654221


Q ss_pred             hhhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073          224 QTRRMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       224 ~t~~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                           .....+..|++++.+|.++...
T Consensus       239 -----~~~~~~~~l~~~G~~v~~g~~~  260 (334)
T cd08234         239 -----TLEQAIEYARRGGTVLVFGVYA  260 (334)
T ss_pred             -----HHHHHHHHHhcCCEEEEEecCC
Confidence                 1233456677777788776543

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK05717 oxidoreductase; Validated

Probab=91.27  E-value=0.61  Score=42.20  Aligned_cols=37  Identities=27%  Similarity=0.350  Sum_probs=33.2

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      .+.||++.|.| .|.||+.+|+.|...|++|+..+++.
T Consensus         7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~   44 (255)
T PRK05717          7 GHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR   44 (255)
T ss_pred             ccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH
Confidence            47899999999 59999999999999999999988764

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=91.22  E-value=0.54  Score=45.85  Aligned_cols=81  Identities=17%  Similarity=0.256  Sum_probs=48.4

Q ss_pred             ceEEEEe-cChHHHHHHH-HHhhCCCE---EEEECCCCCC---C---C--ccccCCH-HhhhcCCCEEEEeccCChhhhh
Q 020073          162 KRVGIVG-LGNIGLQVAK-RLQAFGCN---VLYNSRSKKP---V---P--YAFYSNV-CELAANSDALIICCALTDQTRR  227 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~-~l~~~G~~---V~~~~~~~~~---~---~--~~~~~~l-~ell~~aDiV~l~~P~t~~t~~  227 (331)
                      .+||||| .|.+|+.+.+ .+..-.+.   +..++.....   .   +  ....... .+.++++|++++|+|.. .+..
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~~-~s~~   80 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDIDALKKLDIIITCQGGD-YTNE   80 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChhHhcCCCEEEECCCHH-HHHH
Confidence            4799999 5999999998 66655665   5555443211   1   1  1111111 23458899999999854 3333


Q ss_pred             hccHHHHhcCCCC--cEEEEcC
Q 020073          228 MINREVMLALGKE--GIIVNVG  247 (331)
Q Consensus       228 li~~~~l~~mk~g--a~lIn~s  247 (331)
                      +. ...   .+.|  +++|+.|
T Consensus        81 ~~-~~~---~~aG~~~~VID~S   98 (369)
T PRK06598         81 VY-PKL---RAAGWQGYWIDAA   98 (369)
T ss_pred             HH-HHH---HhCCCCeEEEECC
Confidence            32 111   2456  6788887

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.22  E-value=0.36  Score=43.22  Aligned_cols=37  Identities=22%  Similarity=0.247  Sum_probs=33.4

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      ++.|+++.|.|. |.||+.+|+.+...|.+|+..+++.
T Consensus         2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~   39 (253)
T PRK08217          2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ   39 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            367899999997 9999999999999999999888865

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=91.20  E-value=0.48  Score=43.50  Aligned_cols=57  Identities=26%  Similarity=0.214  Sum_probs=41.9

Q ss_pred             EEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCc---c---c--cCCHHhhhcCCCEEEEecc
Q 020073          164 VGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPY---A---F--YSNVCELAANSDALIICCA  220 (331)
Q Consensus       164 vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~---~---~--~~~l~ell~~aDiV~l~~P  220 (331)
                      |.|.| .|.||+.+++.|...|++|++.+|+......   .   .  ...+.+.+.++|+|+.+..
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~   66 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG   66 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence            35677 6999999999999999999999987654110   0   0  1244567788999887774

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=91.19  E-value=0.25  Score=42.09  Aligned_cols=31  Identities=29%  Similarity=0.382  Sum_probs=25.4

Q ss_pred             eEEEEecChHHHHHHHHHh-hCCCEEEEECCC
Q 020073          163 RVGIVGLGNIGLQVAKRLQ-AFGCNVLYNSRS  193 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~-~~G~~V~~~~~~  193 (331)
                      +|||-|||+||+.+++.+. .-.++|++.+..
T Consensus         2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~   33 (151)
T PF00044_consen    2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDP   33 (151)
T ss_dssp             EEEEESTSHHHHHHHHHHHTSTTEEEEEEEES
T ss_pred             EEEEECCCcccHHHHHhhcccceEEEEEEecc
Confidence            7999999999999999987 456788766543

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=91.13  E-value=0.63  Score=45.34  Aligned_cols=36  Identities=31%  Similarity=0.474  Sum_probs=31.8

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      .++|+|||.|..|+.+++.++.+|.+|+.++..+..
T Consensus        12 ~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~~   47 (395)
T PRK09288         12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANA   47 (395)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            568999999999999999999999999988876543

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=91.09  E-value=0.87  Score=44.86  Aligned_cols=61  Identities=16%  Similarity=0.232  Sum_probs=47.4

Q ss_pred             cCCCceEEEEec-----C---hHHHHHHHHHhhCCCEEEEECCCCCC-----C----------C--ccccCCHHhhhcCC
Q 020073          158 KLGGKRVGIVGL-----G---NIGLQVAKRLQAFGCNVLYNSRSKKP-----V----------P--YAFYSNVCELAANS  212 (331)
Q Consensus       158 ~l~g~~vgIiG~-----G---~IG~~~A~~l~~~G~~V~~~~~~~~~-----~----------~--~~~~~~l~ell~~a  212 (331)
                      .+.|++|+|+|-     |   ++.++++..+..+|++|.+..+..-.     .          +  .....+++++++++
T Consensus       184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a  263 (395)
T PRK07200        184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA  263 (395)
T ss_pred             ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            478999999985     5   66789999999999999988875311     0          1  12347899999999


Q ss_pred             CEEEEe
Q 020073          213 DALIIC  218 (331)
Q Consensus       213 DiV~l~  218 (331)
                      |+|..-
T Consensus       264 DvVYtd  269 (395)
T PRK07200        264 DIVYPK  269 (395)
T ss_pred             CEEEEc
Confidence            999875

>PRK06153 hypothetical protein; Provisional

Probab=91.07  E-value=0.24  Score=48.43  Aligned_cols=35  Identities=26%  Similarity=0.437  Sum_probs=31.5

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECC
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSR  192 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~  192 (331)
                      .|++++|+|||+|.+|..++..|...|. +++.+|.
T Consensus       173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~  208 (393)
T PRK06153        173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG  208 (393)
T ss_pred             HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence            5899999999999999999999999998 7777764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	331
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		1e-68
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		5e-45
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		1e-34
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		5e-33
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		1e-32
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		9e-32
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		1e-31
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		1e-30
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		2e-28
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		2e-26
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		1e-24
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		5e-24
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		2e-21
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		2e-21
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		3e-21
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		3e-21
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		4e-21
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		1e-20
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		1e-20
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		1e-20
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		1e-20
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		2e-20
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		2e-20
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		4e-20
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		5e-20
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		8e-20
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		8e-20
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		1e-19
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		2e-19
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		3e-19
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		3e-18
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		5e-18
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		6e-18
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		2e-17
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		2e-17
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		3e-17
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		3e-16
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		5e-16
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		1e-15
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		1e-15
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		1e-15
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		9e-15
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		1e-14
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		2e-14
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		2e-14
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		2e-14
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		5e-14
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		1e-13
3kbo_A	315	2.14 Angstrom Crystal Structure Of Putative Oxidore		5e-13
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		2e-12
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		4e-11
1qp8_A	303	Crystal Structure Of A Putative Formate Dehydrogena		5e-11
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		5e-10
3gvx_A	290	Crystal Structure Of Glycerate Dehydrogenase Relate		3e-09
4hy3_A	365	Crystal Structure Of A Phosphoglycerate Oxidoreduct		6e-09
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		1e-08
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		4e-08
3oet_A	381	D-Erythronate-4-Phosphate Dehydrogenase Complexed W		3e-06

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score =  256 bits (655), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 131/304 (43%), Positives = 194/304 (63%), Gaps = 3/304 (0%)
Query: 26  PLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXX 85
           P++ + ++ + + F+L + Y +  +   FL   A SI A++ + ++              
Sbjct: 31  PMSTYLEQELDKRFKLFR-YWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLE 89
Query: 86  XVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQG 145
            V + S G++ + + +C  +G+ V N   + +DD AD A+GL++ V R+I   D+++R+G
Sbjct: 90  IVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRG 149
Query: 146 LWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-VPYAFYSN 204
            W K GD+ L +K  GKRVGI+GLG IGL VA+R +AF C + Y SRSKKP   Y +Y +
Sbjct: 150 AW-KFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNTNYTYYGS 208
Query: 205 VCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264
           V ELA+NSD L++ C LT +T  +INREV+ ALG +G+++N+GRG  +DE E+V  LV G
Sbjct: 209 VVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEG 268
Query: 265 EIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPL 324
            + GAGLDVFE EP VP++L  L+NVVL PH    T E    + +L VGNLEA FS +PL
Sbjct: 269 RLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPL 328
Query: 325 LSPV 328
           L+PV
Sbjct: 329 LTPV 332

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score =  177 bits (450), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 104/310 (33%), Positives = 165/310 (53%), Gaps = 10/310 (3%)
Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESS--LSLEQFLISHAHSIEAILCSGDSPV 73
           P +L+++P  P   F    + R++ + + Y+++   +LE  L     SI A+   G + +
Sbjct: 31  PDLLLVEPXXP---FVXDELQRNYSVHRLYQAADRPALEAAL----PSIRAVATGGGAGL 83
Query: 74  TXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWR 133
           +            +     G + + +   RRR I V     + +DD AD  + L + V R
Sbjct: 84  SNEWXEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLR 143
Query: 134 KISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRS 193
           ++   DR +R+G W+     PLG    GKR+G++GLG IG  +A R +AFG +V Y +RS
Sbjct: 144 RVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVRYWNRS 203
Query: 194 K-KPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVI 252
               V +  + +  +LA +SD L +C A +  T+ +++  ++ ALG EGI+VNV RG V+
Sbjct: 204 TLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVV 263
Query: 253 DENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAV 312
           DE+ ++  L  G IAGAGLDVF NEP +  E     N VL PH+   T E      +L +
Sbjct: 264 DEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLXPHQGSATVETRXAXGKLVL 323
Query: 313 GNLEALFSNQ 322
            NL A F+ +
Sbjct: 324 ANLAAHFAGE 333

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score =  143 bits (361), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 136/263 (51%), Gaps = 12/263 (4%)
Query: 63  EAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAAD 122
           + I+ S  + +T            +   SAG ++I + E  +RGI V     + S+  A+
Sbjct: 44  DGIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAE 103
Query: 123 AAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSK----LGGKRVGIVGLGNIGLQVAK 178
             VGL+I++ RKI  AD+F+R+G W        G K    L GK+VGI+G+G IG  +A+
Sbjct: 104 FTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIAR 163
Query: 179 RLQAFGCNVLYNSRSKK----PVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234
           RL  FG  + Y SR +K        A Y ++ EL   SD +I+   LT  T  +IN E +
Sbjct: 164 RLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERV 223
Query: 235 LALGKEG-IIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELD-NVVL 292
             L  EG  +VN+GRGA++DE  +   + +G++ G   DVFE EP    EL + +   VL
Sbjct: 224 KKL--EGKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVL 281
Query: 293 QPHRAVFTSECFVDLCELAVGNL 315
            PH A    E   D+   AV NL
Sbjct: 282 TPHYAGLALEAQEDVGFRAVENL 304

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score =  138 bits (347), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 101/280 (36%), Positives = 145/280 (51%), Gaps = 16/280 (5%)
Query: 36  SRSFQLLKAYESSLSLEQF-----LISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTA 90
            ++ Q+LK     +  E++     L+     +EAI+      VT            +  A
Sbjct: 14  EKAIQVLKDAGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARA 73
Query: 91  SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKI 150
             G+++I +   + +GI V NA +  S   A+ AVGL+  V RKI+ ADR +R+G+W+K 
Sbjct: 74  GVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAK- 132
Query: 151 GDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY-----NSRSKKPVPYAFYSNV 205
               +G +L GK +GI+G G IG QVAK   A G N+L      N    K V   F  ++
Sbjct: 133 -KEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNGKFV-DL 190
Query: 206 CELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGE 265
             L   SD + I   L + T  +IN E +  + K  I++N  RG V+D N +V+ L  G 
Sbjct: 191 ETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGW 250
Query: 266 IAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTSEC 303
           IAGAGLDVFE EP +PK+  L + DNVVL PH    T E 
Sbjct: 251 IAGAGLDVFEEEP-LPKDHPLTKFDNVVLTPHIGASTVEA 289

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/312 (32%), Positives = 155/312 (49%), Gaps = 12/312 (3%)
Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTX 75
           P+V + +  P +   G K +   F++    +      + L+     ++A++      +  
Sbjct: 3   PKVFITREIPEV---GIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDK 59
Query: 76  XXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKI 135
                      V   + G ++I + E  +RGI V N   + +D  AD A  LL+   R +
Sbjct: 60  EVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHV 119
Query: 136 SSADRFLRQGLWSKIG-----DYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYN 190
              DRF+R G W K G      + LG  + GK +GI+GLG IG  +AKR + F   +LY 
Sbjct: 120 VKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYY 179
Query: 191 SRSKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNV 246
           SR++K        A +  + +L   SD +++   LT +T  +IN E +  + K  I++N+
Sbjct: 180 SRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINI 239
Query: 247 GRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVD 306
            RG V+D N +V+ L  G IAGAGLDVFE EPY  +EL +LDNVVL PH    +      
Sbjct: 240 ARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAREG 299
Query: 307 LCELAVGNLEAL 318
           + EL   NL A 
Sbjct: 300 MAELVAKNLIAF 311

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score =  134 bits (336), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 128/247 (51%), Gaps = 7/247 (2%)
Query: 87  VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
           + T S G++H+ + E ++RGI V     + +D  A+ AV LL+   R++  A   ++ G 
Sbjct: 80  ISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGG 139
Query: 147 WSKIGDYPL-GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSKKPVPYAFYS- 203
           W+      L G  L    VGI+GLG IG  +A+RL+ FG    LY  R  +P   A +  
Sbjct: 140 WTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQA 199
Query: 204 ---NVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRC 260
              +  ELAA SD +++ C+LT  T  + N++    + +  + +N+ RG V++++++ + 
Sbjct: 200 EFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQA 259
Query: 261 LVRGEIAGAGLDVFENEPYVPKE-LLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALF 319
           L  G+IA AGLDV   EP      LL L N V+ PH    T      +  LA  NL A  
Sbjct: 260 LASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGL 319
Query: 320 SNQPLLS 326
             +P+ S
Sbjct: 320 RGEPMPS 326

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score =  134 bits (336), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 147/289 (50%), Gaps = 12/289 (4%)
Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTX 75
           P+V + +  P +   G K +   F++    +      + L+     ++A++      +  
Sbjct: 3   PKVFITREIPEV---GIKXLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTXLSERIDK 59
Query: 76  XXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKI 135
                      V   + G ++I + E  +RGI V N   + +D  AD A  LL+   R +
Sbjct: 60  EVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHV 119
Query: 136 SSADRFLRQGLWSKIG-----DYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYN 190
              DRF+R G W K G      + LG  + GK +GI+GLG IG  +AKR + F   +LY 
Sbjct: 120 VKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNXRILYY 179
Query: 191 SRSKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNV 246
           SR++K        A +  + +L   SD +++   LT +T  +IN E +    K  I++N+
Sbjct: 180 SRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILINI 239
Query: 247 GRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPH 295
            RG V+D N +V+ L  G IAGAGLDVFE EPY  +EL +LDNVVL PH
Sbjct: 240 ARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPH 288

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 124/244 (50%), Gaps = 7/244 (2%)
Query: 87  VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
           + T S G++H+ + E ++RGI V     + +D  A+ AV LL+   R++  A   ++ G 
Sbjct: 78  ISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGG 137
Query: 147 WSKIGDYPL-GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSKKPVPYAFYS- 203
           W+      L G  L    VGI+GLG IG  +A+RL+ FG    LY  R  +P   A +  
Sbjct: 138 WTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQA 197
Query: 204 ---NVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRC 260
              +  ELAA SD +++ C+LT  T  + N++      +  + +N+ RG V++++++ + 
Sbjct: 198 EFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISRGDVVNQDDLYQA 257
Query: 261 LVRGEIAGAGLDVFENEPYVPKE-LLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALF 319
           L  G+IA AGLDV   EP      LL L N V+ PH    T         LA  NL A  
Sbjct: 258 LASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTXSLLAANNLLAGL 317
Query: 320 SNQP 323
             +P
Sbjct: 318 RGEP 321

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/240 (37%), Positives = 133/240 (55%), Gaps = 4/240 (1%)
Query: 91  SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKI 150
           S GV+H+ +   R RGI V +   + ++  AD  + LL+ V R++     + R GLW   
Sbjct: 73  SVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAW 132
Query: 151 -GDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELA 209
             +  LG  L G  +G+VG+G IG  VAKR  AFG  V+Y++R+ KP+PY F S + EL 
Sbjct: 133 HPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLPYPFLS-LEELL 191
Query: 210 ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGA 269
             +D + +   LT +T R++NRE + A+ +  I++N  RGA++D   +V  L RG + GA
Sbjct: 192 KEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEAL-RGHLFGA 250
Query: 270 GLDVFENEPYVP-KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPV 328
           GLDV + EP  P   L  L N V+ PH           + E+AV NL A+   +   +PV
Sbjct: 251 GLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPPNPV 310

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 134/292 (45%), Gaps = 10/292 (3%)
Query: 35  ISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXX-XXXXVVTASAG 93
           + + F L    E ++     + S AH  E +  +    +T             + T S G
Sbjct: 45  LRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATLSVG 104
Query: 94  VNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDY 153
            +HI     R  GI V +   + SD  A+ A  L+++  R+   ADR +R G W   G  
Sbjct: 105 YDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACRRGYEADRXVRSGSWPGWGPT 164
Query: 154 PL-GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYA------FYSNVC 206
            L G  L G+R+GI G G IG  +A R + FG  + Y++R++  + +A      ++  + 
Sbjct: 165 QLLGXGLTGRRLGIFGXGRIGRAIATRARGFGLAIHYHNRTR--LSHALEEGAIYHDTLD 222
Query: 207 ELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEI 266
            L   SD  +I      + +  ++ + +  + +  +++N+ RG +I+++ ++  L    +
Sbjct: 223 SLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHL 282
Query: 267 AGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEAL 318
             AGLDVF NEP +      LDN+ L PH    T E       L +  +EAL
Sbjct: 283 FAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAXGWLLIQGIEAL 334

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 116/242 (47%), Gaps = 11/242 (4%)
Query: 87  VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
           + T S G +HI +  C+ RGI V NA    +   A+ A+ LL+   R+    ++ +R   
Sbjct: 71  ISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRS 130
Query: 147 WSKIGDYPL---GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY------NSRSKKPV 197
           W   G  PL   G KL  K +GI G G+IG  +AKR Q F  ++ Y      +S  +   
Sbjct: 131 WP--GWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASY 188
Query: 198 PYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEM 257
              F+ ++  L + S    +    T +TR   N+  + +L +  I+VN  RG ++D   +
Sbjct: 189 QATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELV 248
Query: 258 VRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEA 317
           V  L  G +A AG DVF  EP + +   +L N  L PH     ++   D+   A   ++A
Sbjct: 249 VAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMAHQANDLIDA 308
Query: 318 LF 319
           LF
Sbjct: 309 LF 310

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score =  108 bits (269), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 127/261 (48%), Gaps = 7/261 (2%)
Query: 46  ESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRR 105
           + +LS E+ LI+     E ++    + VT            V  A  GV+++ +    R+
Sbjct: 53  KQNLSKEE-LIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRK 111
Query: 106 GIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVG 165
           GI V N  +  S  AA+   G+++ + R+I  A   ++ G W +     +G++L GK +G
Sbjct: 112 GILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWER--KKFMGTELNGKTLG 169
Query: 166 IVGLGNIGLQVAKRLQAFGCNVL-YNSRSKKPVPYAFYSN---VCELAANSDALIICCAL 221
           I+GLG IG +VA R+Q+FG   + Y+      V  +F      + E+    D + +   L
Sbjct: 170 ILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPL 229
Query: 222 TDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP 281
              T  ++N        K   +VN  RG ++DE  ++R L  G+ AGA LDVF  EP   
Sbjct: 230 LPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRD 289
Query: 282 KELLELDNVVLQPHRAVFTSE 302
           + L++ +NV+  PH    T E
Sbjct: 290 RALVDHENVISCPHLGASTKE 310

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 125/237 (52%), Gaps = 12/237 (5%)
Query: 87  VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
           +V   +G ++I +      GIAV N  +   ++ AD+ +  +++++R+ +   + LR+G 
Sbjct: 92  IVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGT 151
Query: 147 W----SKIGDYPLGS-KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY-----NSRSKKP 196
                 +I +   G+ ++ G+ +GI+GLG +G  VA R +AFG NVL+     +   ++ 
Sbjct: 152 RVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIERA 211
Query: 197 VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENE 256
           +     S + +L  +SD + + C L +    +IN   +  + +   +VN  RG ++DE  
Sbjct: 212 LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKA 271
Query: 257 MVRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTSECFVDLCELA 311
           + + L  G I GA LDV E+EP+   +  L +  N++  PH A ++ +  +++ E A
Sbjct: 272 LAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEA 328

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 125/237 (52%), Gaps = 12/237 (5%)
Query: 87  VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
           +V   +G ++I +      GIAV N  +   ++ AD+ +  +++++R+ +   + LR+G 
Sbjct: 92  IVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGT 151
Query: 147 W----SKIGDYPLGS-KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY-----NSRSKKP 196
                 +I +   G+ ++ G+ +GI+GLG +G  VA R +AFG NVL+     +   ++ 
Sbjct: 152 RVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGIERA 211
Query: 197 VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENE 256
           +     S + +L  +SD + + C L +    +IN   +  + +   +VN  RG ++DE  
Sbjct: 212 LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKA 271
Query: 257 MVRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTSECFVDLCELA 311
           + + L  G I GA LDV E+EP+   +  L +  N++  PH A ++ +  +++ E A
Sbjct: 272 LAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEA 328

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 112/221 (50%), Gaps = 6/221 (2%)
Query: 87  VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
           V  A  G++++ +     RG+ V NA +     AA+ A+ LL+   R+I +AD  LR+  
Sbjct: 69  VARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHT 128
Query: 147 WSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYS--- 203
           W +      G+++ GK VG+VGLG IG  VA+R+ AFG  V+       P   A      
Sbjct: 129 WKRSSFS--GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIEL 186
Query: 204 -NVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLV 262
            ++ +L A +D + +    T +T  +I++E +       IIVN  RG ++DE  +   + 
Sbjct: 187 LSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAIT 246
Query: 263 RGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSEC 303
            G +  AGLDVF  EP     L EL  VV+ PH    T+E 
Sbjct: 247 GGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEA 287

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 112/221 (50%), Gaps = 6/221 (2%)
Query: 87  VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
           V  A  G++++ +     RG+ V NA +     AA+ A+ LL+   R+I +AD  LR+  
Sbjct: 70  VARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHT 129
Query: 147 WSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYS--- 203
           W +      G+++ GK VG+VGLG IG  VA+R+ AFG  V+       P   A      
Sbjct: 130 WKRSSFS--GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIEL 187
Query: 204 -NVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLV 262
            ++ +L A +D + +    T +T  +I++E +       IIVN  RG ++DE  +   + 
Sbjct: 188 LSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAIT 247
Query: 263 RGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSEC 303
            G +  AGLDVF  EP     L EL  VV+ PH    T+E 
Sbjct: 248 GGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEA 288

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 125/237 (52%), Gaps = 12/237 (5%)
Query: 87  VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
           +V   +G ++I +      GIAV N  +   ++ AD+ +  +++++R+ +   + LR+G 
Sbjct: 89  IVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGT 148
Query: 147 W----SKIGDYPLGS-KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY-----NSRSKKP 196
                 +I +   G+ ++ G+ +GI+GLG +G  VA R +AFG NVL+     +   ++ 
Sbjct: 149 RVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERA 208
Query: 197 VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENE 256
           +     S + +L  +SD + + C L +    +IN   +  + +   +VN  RG ++DE  
Sbjct: 209 LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKA 268
Query: 257 MVRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTSECFVDLCELA 311
           + + L  G I GA LDV E+EP+   +  L +  N++  PH A ++ +  +++ E A
Sbjct: 269 LAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEA 325

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 122/253 (48%), Gaps = 17/253 (6%)
Query: 90  ASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQG---- 145
           A AG + + +     RG+A AN+        +D A+ L++ V+R  S ++R  R G    
Sbjct: 87  AGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPET 146
Query: 146 ---LWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKR-LQAFGCNVLY------NSRSKK 195
              +  +IG      +  G  +G VGLG I  ++A++ +   G  ++Y      ++ ++K
Sbjct: 147 FNRVHLEIGKSAHNPR--GHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEK 204
Query: 196 PVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDEN 255
            +      ++ ELA  SD + +       T  +I+     A+     IVN  RG VI ++
Sbjct: 205 ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQD 264
Query: 256 EMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNL 315
            ++  L  G++  AGLDV E EP V KEL+E+ +V L  H      E F +   L + N+
Sbjct: 265 ALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNI 324
Query: 316 EA-LFSNQPLLSP 327
           +  L   +PLL+P
Sbjct: 325 DRFLLQGKPLLTP 337

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 122/253 (48%), Gaps = 17/253 (6%)
Query: 90  ASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQG---- 145
           A AG + + +     RG+A AN+        +D A+ L++ V+R  S ++R  R G    
Sbjct: 87  AGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPET 146
Query: 146 ---LWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKR-LQAFGCNVLY------NSRSKK 195
              +  +IG      +  G  +G VGLG I  ++A++ +   G  ++Y      ++ ++K
Sbjct: 147 FNRVHLEIGKSAHNPR--GHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEK 204
Query: 196 PVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDEN 255
            +      ++ ELA  SD + +       T  +I+     A+     IVN  RG VI ++
Sbjct: 205 ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQD 264
Query: 256 EMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNL 315
            ++  L  G++  AGLDV E EP V KEL+E+ +V L  H      E F +   L + N+
Sbjct: 265 ALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNI 324
Query: 316 EA-LFSNQPLLSP 327
           +  L   +PLL+P
Sbjct: 325 DRFLLQGKPLLTP 337

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 121/249 (48%), Gaps = 14/249 (5%)
Query: 90  ASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK 149
           A  G ++  +  C  RG+ +     + +   A+ A+GL + + R + +AD F+R G +  
Sbjct: 74  ALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRG 133
Query: 150 IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSR----SKKPVPYAFYSNV 205
                 G+ L    VG +G+G IGL +A RLQ +G  + Y++R    ++           
Sbjct: 134 WQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLRQVA 193
Query: 206 C-ELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264
           C EL A+SD +++   L   T  ++N E++  +    ++VN  RG+V+DE  ++  L RG
Sbjct: 194 CSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERG 253
Query: 265 EIAGAGLDVFENEPYV----PKE----LLELDNVVLQPHRAVFTSECFVDLCELAVGN-L 315
           ++ G   DVFE E +     P++    LL   N +  PH         +++   A  N L
Sbjct: 254 QLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNIL 313
Query: 316 EALFSNQPL 324
           +AL   +P+
Sbjct: 314 QALAGERPI 322

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 121/249 (48%), Gaps = 14/249 (5%)
Query: 90  ASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK 149
           A  G ++  +  C  RG+ +     + +   A+ A+GL + + R + +AD F+R G +  
Sbjct: 74  ALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRG 133
Query: 150 IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSR----SKKPVPYAFYSNV 205
                 G+ L    VG +G+G IGL +A RLQ +G  + Y++R    ++           
Sbjct: 134 WQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQRLGLRQVA 193
Query: 206 C-ELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264
           C EL A+SD +++   L   T  ++N E++  +    ++VN  RG+V+DE  ++  L RG
Sbjct: 194 CSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERG 253
Query: 265 EIAGAGLDVFENEPYV----PKE----LLELDNVVLQPHRAVFTSECFVDLCELAVGN-L 315
           ++ G   DVFE E +     P++    LL   N +  PH         +++   A  N L
Sbjct: 254 QLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNIL 313
Query: 316 EALFSNQPL 324
           +AL   +P+
Sbjct: 314 QALAGERPI 322

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 122/253 (48%), Gaps = 17/253 (6%)
Query: 90  ASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQG---- 145
           A AG + + +     RG+A AN+        +D A+ L++ V+R  S ++R  R G    
Sbjct: 87  AGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPET 146
Query: 146 ---LWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKR-LQAFGCNVLY------NSRSKK 195
              +  +IG      +  G  +G VGLG I  ++A++ +   G  ++Y      ++ ++K
Sbjct: 147 FNRVHLEIGKSAHNPR--GHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEK 204
Query: 196 PVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDEN 255
            +      ++ ELA  SD + +       T  +I+     A+     IVN  RG VI ++
Sbjct: 205 ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQD 264
Query: 256 EMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNL 315
            ++  L  G++  AGLDV E EP V KEL+E+ +V L  H      E F +   L + N+
Sbjct: 265 ALIAALKSGKLLSAGLDVHEFEPNVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNI 324
Query: 316 EA-LFSNQPLLSP 327
           +  L   +PLL+P
Sbjct: 325 DRFLLQGKPLLTP 337

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 124/237 (52%), Gaps = 12/237 (5%)
Query: 87  VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
           +V   +G ++I +      GIAV N  +   ++ AD+ +  +++++R+ +   + LR+G 
Sbjct: 92  IVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGT 151
Query: 147 W----SKIGDYPLGS-KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY-----NSRSKKP 196
                 +I +   G+ ++ G+ +GI+GL  +G  VA R +AFG NVL+     +   ++ 
Sbjct: 152 RVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAFGFNVLFYDPYLSDGIERA 211
Query: 197 VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENE 256
           +     S + +L  +SD + + C L +    +IN   +  + +   +VN  RG ++DE  
Sbjct: 212 LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKA 271
Query: 257 MVRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTSECFVDLCELA 311
           + + L  G I GA LDV E+EP+   +  L +  N++  PH A ++ +  +++ E A
Sbjct: 272 LAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEA 328

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 127/250 (50%), Gaps = 22/250 (8%)
Query: 89  TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWS 148
           T S G +HI +  C+++GI V +  +   +  A+     ++ + +++   +  +++  +S
Sbjct: 70  TRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRIEDRVKKLNFS 129
Query: 149 KIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YNSRSKKPVPYA--FYSNV 205
           +  +  L  +L    +G++G G IG +VA    AFG  VL Y+   ++ +      Y+++
Sbjct: 130 QDSEI-LARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVKREDLKEKGCVYTSL 188
Query: 206 CELAANSDALIICCALTDQTRRMINREVMLALGKEGI-IVNVGRGAVIDENEMVRCLVRG 264
            EL   SD + +    T +T   IN E  ++L K+G+ ++N  RG V+D + + R   RG
Sbjct: 189 DELLKESDVISLHVPYTKETHHXINEE-RISLXKDGVYLINTARGKVVDTDALYRAYQRG 247
Query: 265 EIAGAGLDVFENEPYV-------------PKELLEL---DNVVLQPHRAVFTSECFVDLC 308
           + +G GLDVFE+E  +               ++LEL   DNV++ PH A +T +    + 
Sbjct: 248 KFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIAYYTDKSLERIR 307
Query: 309 ELAVGNLEAL 318
           E  V  ++A 
Sbjct: 308 EETVKVVKAF 317

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 103/225 (45%), Gaps = 19/225 (8%)
Query: 91  SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKI 150
           S G N + +   R+RGI V NA    +   A+  +G +I + R+I         G W K 
Sbjct: 88  SVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKT 147
Query: 151 GDYPLGSK-LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVC--- 206
               +GS+ + GK +GIVG GNIG QV    ++ G  V Y   S K      Y NV    
Sbjct: 148 A---IGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDK----LQYGNVKPAA 200
Query: 207 ---ELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR 263
              EL   SD + +    +  T ++I    +  + K   ++N  RG+ +D   + + L  
Sbjct: 201 SLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQE 260
Query: 264 GEIAGAGLDVFENEPYVPKE-----LLELDNVVLQPHRAVFTSEC 303
           G +AGA +DVF  EP    E     L  L+NV+L PH    T E 
Sbjct: 261 GHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEA 305

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score = 94.4 bits (233), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 114/243 (46%), Gaps = 11/243 (4%)
Query: 89  TASAGVNHIHMPECRRRGIAVAN-AGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLW 147
           TA  G +HI +      G+ VA   GS     A D  + +LI + R        + +G W
Sbjct: 92  TAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILI-LMRNFVPGYNQVVKGEW 150
Query: 148 SKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK------KPVPYAF 201
           +  G       L GK +G VG G IG  + +RL+ FGCN+LY+ R +      K     F
Sbjct: 151 NVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKF 210
Query: 202 YSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCL 261
             ++ E+    D ++I   LT++TR M N+E++  L K  +IVN  RGA+++   +V  +
Sbjct: 211 VEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAV 270
Query: 262 VRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALF 319
             G I G   DV++ +P  PK+     + N  + PH +  T +  +         LE  F
Sbjct: 271 ESGHIGGYSGDVWDPQP-APKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYF 329
Query: 320 SNQ 322
             +
Sbjct: 330 KGE 332

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score = 94.4 bits (233), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 114/243 (46%), Gaps = 11/243 (4%)
Query: 89  TASAGVNHIHMPECRRRGIAVAN-AGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLW 147
           TA  G +HI +      G+ VA   GS     A D  + +LI + R        + +G W
Sbjct: 98  TAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILI-LMRNFVPGYNQVVKGEW 156
Query: 148 SKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK------KPVPYAF 201
           +  G       L GK +G VG G IG  + +RL+ FGCN+LY+ R +      K     F
Sbjct: 157 NVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKF 216
Query: 202 YSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCL 261
             ++ E+    D ++I   LT++TR M N+E++  L K  +IVN  RGA+++   +V  +
Sbjct: 217 VEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAV 276
Query: 262 VRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALF 319
             G I G   DV++ +P  PK+     + N  + PH +  T +  +         LE  F
Sbjct: 277 ESGHIGGYSGDVWDPQP-APKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYF 335
Query: 320 SNQ 322
             +
Sbjct: 336 KGE 338

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 119/249 (47%), Gaps = 14/249 (5%)
Query: 90  ASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK 149
           A  G ++  +  C  RG+ +     + +   A+ A+GL + + R + +AD F+R G +  
Sbjct: 74  ALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRG 133
Query: 150 IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSR----SKKPVPYAFYSNV 205
                 G+ L    VG +G+G IGL +A RLQ +G  + Y+      ++           
Sbjct: 134 WQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVA 193
Query: 206 C-ELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264
           C EL A+SD +++   L   T  ++N E++  +    ++VN  RG+V+DE  ++  L RG
Sbjct: 194 CSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERG 253
Query: 265 EIAGAGLDVFENEPYV----PKE----LLELDNVVLQPHRAVFTSECFVDLCELAVGN-L 315
           ++ G   DVFE E +     P++    LL   N +  PH         +++   A  N L
Sbjct: 254 QLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNIL 313
Query: 316 EALFSNQPL 324
           +AL   +P+
Sbjct: 314 QALAGERPI 322

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 119/249 (47%), Gaps = 14/249 (5%)
Query: 90  ASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK 149
           A  G ++  +  C  RG+ +     + +   A+ A+GL + + R + +AD F+R G +  
Sbjct: 74  ALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRG 133
Query: 150 IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSR----SKKPVPYAFYSNV 205
                 G+ L    VG +G+G IGL +A RLQ +G  + Y+      ++           
Sbjct: 134 WQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVA 193
Query: 206 C-ELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264
           C EL A+SD +++   L   T  ++N E++  +    ++VN  RG+V+DE  ++  L RG
Sbjct: 194 CSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERG 253
Query: 265 EIAGAGLDVFENEPYV----PKE----LLELDNVVLQPHRAVFTSECFVDLCELAVGN-L 315
           ++ G   DVFE E +     P++    LL   N +  PH         +++   A  N L
Sbjct: 254 QLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNIL 313
Query: 316 EALFSNQPL 324
           +AL   +P+
Sbjct: 314 QALAGERPI 322

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 118/249 (47%), Gaps = 14/249 (5%)
Query: 90  ASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK 149
           A  G ++  +  C  RG+ +     + +   A+ A+GL + + R + +AD F+R G +  
Sbjct: 75  ALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRG 134
Query: 150 IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSR----SKKPVPYAFYSNV 205
                 G+ L    VG +G G IGL  A RLQ +G  + Y++     ++           
Sbjct: 135 WQPRFYGTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYHAAKALDTQTEQRLGLRQVA 194
Query: 206 C-ELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264
           C EL A+SD +++   L   T  ++N E++  +    ++VN  RG+V+DE  ++  L RG
Sbjct: 195 CSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERG 254
Query: 265 EIAGAGLDVFENEPYV----PKE----LLELDNVVLQPHRAVFTSECFVDLCELAVGN-L 315
           ++ G   DVFE E +     P++    LL   N +  PH         +++   A  N L
Sbjct: 255 QLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNIL 314
Query: 316 EALFSNQPL 324
           +AL   +P+
Sbjct: 315 QALAGERPI 323

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 124/280 (44%), Gaps = 16/280 (5%)
Query: 45  YESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRR 104
           Y   +S E+ L +   + + I+    + VT            +  A  G+++I   E  +
Sbjct: 31  YMPEISKEELL-NIIGNYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEK 89
Query: 105 RGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRV 164
           R I V  A    +D A +  +GL+I   RK+ ++    + G++ KI     G +L GK +
Sbjct: 90  RNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIE----GLELAGKTI 145
Query: 165 GIVGLGNIGLQVAKRLQAFGCNVL----YNSRSKKPVPYAFYSNVCELAANSDALIICCA 220
           GIVG G IG +V     A G  VL     + R K     A   ++ EL  NSD + +   
Sbjct: 146 GIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVT 205
Query: 221 LTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYV 280
           ++   + +I+      +    IIVN  R   ++   ++  + +G++     DVF NEP  
Sbjct: 206 VSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEP-- 263
Query: 281 PK-----ELLELDNVVLQPHRAVFTSECFVDLCELAVGNL 315
           PK     ELL+ + V++  H    T E    + E+   NL
Sbjct: 264 PKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNL 303

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 122/263 (46%), Gaps = 27/263 (10%)
Query: 88  VTASAGVNHIHMPECRRRGIAVANA-GSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
           V+  AG  HI +  C  +G+ V    GS  +   A+    L++   R+I      L+ G 
Sbjct: 81  VSRDAG-GHIDLEACTDKGVVVLEGKGSPVA--PAELTWALVMAAQRRIPQYVASLKHGA 137
Query: 147 WSKIG--------DYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY----NSRSK 194
           W + G        ++ +G  L G+ +GI G G IG  VA   +AFG NVL     NS+ +
Sbjct: 138 WQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKER 197
Query: 195 -KPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVID 253
            +   +A   +   L   SD L +   L D+TR +I    +  +    + VN  R  +++
Sbjct: 198 ARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVE 257
Query: 254 ENEMVRCLVRGEIAGAGLDVFENEPYVP-KELLELDNVVLQPHRAVFTSE--------CF 304
           EN MV  L RG    A +DVFE EP +    LL ++N +  PH      E         F
Sbjct: 258 ENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAF 317
Query: 305 VDLCELAVGNLEALFSNQPLLSP 327
            ++ ++  GN++++ +N   L+P
Sbjct: 318 QNILDILQGNVDSV-ANPTALAP 339

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score = 88.2 bits (217), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 120/237 (50%), Gaps = 12/237 (5%)
Query: 87  VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
           +V   +G +++ +      GIAV N  S   ++ AD+ +  +++++R+ +   + LR+G 
Sbjct: 73  IVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREGT 132
Query: 147 W----SKIGDYPLGS-KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY-----NSRSKKP 196
                 +I +   G+ ++ G+ +G++G G  G  VA R +AFG +V++         ++ 
Sbjct: 133 RVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGIERS 192
Query: 197 VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENE 256
           +       + +L   SD + + C L +    +IN   +  + +   +VN  RG ++DE  
Sbjct: 193 LGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKA 252
Query: 257 MVRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTSECFVDLCELA 311
           + + L  G I GA LDV E+EP+   +  L +  N++  PH A ++ +  +++ E A
Sbjct: 253 LAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAA 309

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 113/244 (46%), Gaps = 9/244 (3%)
Query: 93  GVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGD 152
           G N + +    +RGI V NA    +   A+  +G L+ + R +  A+    +G+W+K+  
Sbjct: 85  GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAA 144
Query: 153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNV-LYNSRSKKPVPYAFY-SNVCELAA 210
               ++  GK++GI+G G+IG Q+    ++ G  V  Y+  +K P+  A    ++ +L  
Sbjct: 145 GSFEAR--GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLN 202
Query: 211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAG 270
            SD + +       T+ M+  + +  +    +++N  RG V+D   +   L    +AGA 
Sbjct: 203 MSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAA 262
Query: 271 LDVFENEPYVPKE-----LLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLL 325
           +DVF  EP    +     L E DNV+L PH    T E   ++     G L     N   L
Sbjct: 263 IDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTL 322
Query: 326 SPVT 329
           S V 
Sbjct: 323 SAVN 326

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 113/244 (46%), Gaps = 9/244 (3%)
Query: 93  GVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGD 152
           G N + +    +RGI V NA    +   A+  +G L+ + R +  A+    +G+W+K+  
Sbjct: 85  GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAA 144
Query: 153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNV-LYNSRSKKPVPYAFY-SNVCELAA 210
               ++  GK++GI+G G+IG Q+    ++ G  V  Y+  +K P+  A    ++ +L  
Sbjct: 145 GSFEAR--GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLN 202
Query: 211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAG 270
            SD + +       T+ M+  + +  +    +++N  RG V+D   +   L    +AGA 
Sbjct: 203 MSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAA 262
Query: 271 LDVFENEPYVPKE-----LLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLL 325
           +DVF  EP    +     L E DNV+L PH    T E   ++     G L     N   L
Sbjct: 263 IDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTL 322
Query: 326 SPVT 329
           S V 
Sbjct: 323 SAVN 326

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 113/244 (46%), Gaps = 9/244 (3%)
Query: 93  GVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGD 152
           G N + +    +RGI V NA    +   A+  +G L+ + R +  A+    +G+W+K+  
Sbjct: 84  GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAA 143
Query: 153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNV-LYNSRSKKPVPYAFY-SNVCELAA 210
               ++  GK++GI+G G+IG Q+    ++ G  V  Y+  +K P+  A    ++ +L  
Sbjct: 144 GSFEAR--GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLN 201
Query: 211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAG 270
            SD + +       T+ M+  + +  +    +++N  RG V+D   +   L    +AGA 
Sbjct: 202 MSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAA 261
Query: 271 LDVFENEPYVPKE-----LLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLL 325
           +DVF  EP    +     L E DNV+L PH    T E   ++     G L     N   L
Sbjct: 262 IDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTL 321
Query: 326 SPVT 329
           S V 
Sbjct: 322 SAVN 325

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 115/256 (44%), Gaps = 17/256 (6%)
Query: 91  SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKI 150
           + G ++I M   ++ GI ++N  +      A+ A+   + + R +      L+ G + K 
Sbjct: 76  NVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKA 135
Query: 151 GDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YNSRSKK-PVPYAFYSNVCEL 208
           G + +G +LG + VG++G G+IG    K  + FG  V+ Y+    K   P   Y ++ +L
Sbjct: 136 GTF-IGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDL 194
Query: 209 AANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAG 268
              SD + +     +Q   +IN      +    I++N  R  +ID   M+  L  G++AG
Sbjct: 195 FKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAG 254
Query: 269 AGLDVFENEPY--------------VPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN 314
            G+D +E E                +  ELL + NVVL PH A +T     ++   ++ +
Sbjct: 255 VGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQH 314
Query: 315 LEALFSNQPLLSPVTA 330
           L    +     + VT 
Sbjct: 315 LVDFLTKGETSTEVTG 330

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 114/245 (46%), Gaps = 11/245 (4%)
Query: 93  GVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGD 152
           G N + +    +RGI V NA    +   A+  +G L+ + R +  A+    +G+W+K+  
Sbjct: 85  GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAA 144
Query: 153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNV-LYNSRSKKPVPYAFY-SNVCELAA 210
               ++  GK++GI+G G+IG Q+    ++ G  V  Y+  +K P+  A    ++ +L  
Sbjct: 145 GSFEAR--GKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKLPLGNATQVQHLSDLLN 202
Query: 211 NSDALIICCALTDQTRRMINREVMLALGKEG-IIVNVGRGAVIDENEMVRCLVRGEIAGA 269
            SD + +       T+     +  ++L K G +++N  RG V+D   +   L    +AGA
Sbjct: 203 XSDVVSLHVPENPSTKNXXGAK-EISLXKPGSLLINASRGTVVDIPALCDALASKHLAGA 261
Query: 270 GLDVFENEPYVPKE-----LLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPL 324
            +DVF  EP    +     L E DNV+L PH    T E   ++     G L     N   
Sbjct: 262 AIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGST 321
Query: 325 LSPVT 329
           LS V 
Sbjct: 322 LSAVN 326

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 105/273 (38%), Gaps = 31/273 (11%)
Query: 40  QLLKAYESSLSLEQFLISHAHSIEAILCSGDSP-----------------------VTXX 76
           QLL +    L L ++L S+ H++  +    D P                       +T  
Sbjct: 48  QLLGSVSGELGLRKYLESNGHTL-VVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPE 106
Query: 77  XXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKIS 136
                      +TA  G +H+ +     R + VA      S   A+  V +++ + R   
Sbjct: 107 RIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYL 166
Query: 137 SADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP 196
            +  + R+G W+          L    VG V  G IGL V +RL  F  ++ Y  R + P
Sbjct: 167 PSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLP 226
Query: 197 VPYAFYSNVCELAANSDALIIC------CALTDQTRRMINREVMLALGKEGIIVNVGRGA 250
                  N+   A   D   +C      C L  +T  MIN E +    +   IVN  RG 
Sbjct: 227 ESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGK 286
Query: 251 VIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE 283
           + D + + R L  G +AG   DV+  +P  PK+
Sbjct: 287 LCDRDAVARALESGRLAGYAGDVWFPQP-APKD 318

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 105/273 (38%), Gaps = 31/273 (11%)
Query: 40  QLLKAYESSLSLEQFLISHAHSIEAILCSGDSP-----------------------VTXX 76
           QLL +    L L ++L S+ H++  +    D P                       +T  
Sbjct: 49  QLLGSVSGELGLRKYLESNGHTL-VVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPE 107
Query: 77  XXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKIS 136
                      +TA  G +H+ +     R + VA      S   A+  V +++ + R   
Sbjct: 108 RIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYL 167
Query: 137 SADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP 196
            +  + R+G W+          L    VG V  G IGL V +RL  F  ++ Y  R + P
Sbjct: 168 PSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLP 227
Query: 197 VPYAFYSNVCELAANSDALIIC------CALTDQTRRMINREVMLALGKEGIIVNVGRGA 250
                  N+   A   D   +C      C L  +T  MIN E +    +   IVN  RG 
Sbjct: 228 ESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGK 287
Query: 251 VIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE 283
           + D + + R L  G +AG   DV+  +P  PK+
Sbjct: 288 LCDRDAVARALESGRLAGYAGDVWFPQP-APKD 319

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 105/273 (38%), Gaps = 31/273 (11%)
Query: 40  QLLKAYESSLSLEQFLISHAHSIEAILCSGDSP-----------------------VTXX 76
           QLL +    L L ++L S+ H++  +    D P                       +T  
Sbjct: 49  QLLGSVSGELGLRKYLESNGHTL-VVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPE 107
Query: 77  XXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKIS 136
                      +TA  G +H+ +     R + VA      S   A+  V +++ + R   
Sbjct: 108 RIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYL 167
Query: 137 SADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP 196
            +  + R+G W+          L    VG V  G IGL V +RL  F  ++ Y  R + P
Sbjct: 168 PSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLP 227
Query: 197 VPYAFYSNVCELAANSDALIIC------CALTDQTRRMINREVMLALGKEGIIVNVGRGA 250
                  N+   A   D   +C      C L  +T  MIN E +    +   IVN  RG 
Sbjct: 228 ESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGK 287
Query: 251 VIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE 283
           + D + + R L  G +AG   DV+  +P  PK+
Sbjct: 288 LCDRDAVARALESGRLAGYAGDVWFPQP-APKD 319

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 113/245 (46%), Gaps = 11/245 (4%)
Query: 93  GVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGD 152
           G N + +    +RGI V NA    +   A+  +G L+ + R +  A+    +G+ +K+  
Sbjct: 79  GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAA 138
Query: 153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNV-LYNSRSKKPVPYAFY-SNVCELAA 210
               ++  GK++GI+G G+IG Q+    ++ G  V  Y+  +K P+  A    ++ +L  
Sbjct: 139 GSFEAR--GKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKLPLGNATQVQHLSDLLN 196
Query: 211 NSDALIICCALTDQTRRMINREVMLALGKEG-IIVNVGRGAVIDENEMVRCLVRGEIAGA 269
            SD + +       T+     +  ++L K G +++N  RG V+D   +   L    +AGA
Sbjct: 197 XSDVVSLHVPENPSTKNXXGAK-EISLXKPGSLLINASRGTVVDIPALADALASKHLAGA 255
Query: 270 GLDVFENEPYVPKE-----LLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPL 324
            +DVF  EP    +     L E DNV+L PH    T E   ++     G L     N   
Sbjct: 256 AIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGST 315
Query: 325 LSPVT 329
           LS V 
Sbjct: 316 LSAVN 320

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 111/244 (45%), Gaps = 18/244 (7%)
Query: 89  TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWS 148
           +  AGV+ +    CRR    + N   IF    ++   G L+ + R++       +Q LW 
Sbjct: 73  STYAGVDVLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQ 131
Query: 149 KIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCEL 208
               +P    L G+ + I+G G+IG  +A   + FG  VL  SRS +    A +  V +L
Sbjct: 132 S---HPY-QGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRE--RAGFDQVYQL 185
Query: 209 AA------NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLV 262
            A       +D ++     T +T  +             I+ NVGRG  I+E +++  L 
Sbjct: 186 PALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALR 245
Query: 263 RGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFS 320
            G++  A LDVFE EP +P +  L    N+++ PH + ++     D+ ++ V N      
Sbjct: 246 TGKLGMAVLDVFEQEP-LPADSPLWGQPNLIITPHNSAYSFPD--DVAQIFVRNYIRFID 302
Query: 321 NQPL 324
            QPL
Sbjct: 303 GQPL 306

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 102/254 (40%), Gaps = 8/254 (3%)
Query: 33  KFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSP--VTXXXXXXXXXXXXVVTA 90
           K++      L    S    +  L  H H  E I+     P  +T             +TA
Sbjct: 61  KYLESQGHELVVTSSKDGPDSELEKHLHDAEVIISQPFWPAYLTAERIAKAPKLKLALTA 120
Query: 91  SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKI 150
             G +H+ +       I VA      S+  A+  V +++ + R    +  + R G W+  
Sbjct: 121 GIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNGGWNIA 180
Query: 151 GDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSN 204
                   + G  VG V  G IGL+V + L  F  ++ Y  R + P      +   +++ 
Sbjct: 181 DCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPEAVEKELNLTWHAT 240
Query: 205 VCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264
             ++    D + + C L  +T  MIN E +    +   +VN  RG + D + +VR L  G
Sbjct: 241 REDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESG 300
Query: 265 EIAGAGLDVFENEP 278
            +AG   DV+  +P
Sbjct: 301 RLAGYAGDVWFPQP 314

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 108/216 (50%), Gaps = 19/216 (8%)
Query: 91  SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSA---DRFLRQGLW 147
           SAGV+++ +   +  G+ VAN   I +D  +++ +  ++ V R   +A    R  RQ  W
Sbjct: 69  SAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQ--W 126
Query: 148 SKIGDYPLG-SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVC 206
           +     P+  S L G+++ I G G IG  +A +  A G +V+  + +  P  + F+  V 
Sbjct: 127 A----LPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADH-FHETVA 181
Query: 207 ELAANS-----DALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCL 261
             A        + ++    LT  T  + + E+     ++ +++N+GRG  +D   ++  L
Sbjct: 182 FTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTAL 241
Query: 262 VRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPH 295
              +++ A LDV E EP +P +  L + D+V++ PH
Sbjct: 242 DHHQLSMAALDVTEPEP-LPTDHPLWQRDDVLITPH 276

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 102/254 (40%), Gaps = 8/254 (3%)
Query: 33  KFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSP--VTXXXXXXXXXXXXVVTA 90
           K++      L    S    +  L  H H  E I+     P  +T             +TA
Sbjct: 62  KYLESQGHELVVTSSKDGPDSELEKHLHDAEVIISQPFWPAYLTAERIAKAPKLKLALTA 121
Query: 91  SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKI 150
             G +H+ +       I VA      S+  A+  V +++ + R    +  + R G W+  
Sbjct: 122 GIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNGGWNIA 181
Query: 151 GDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSN 204
                   + G  VG V  G IGL+V + L  F  ++ Y  R + P      +   +++ 
Sbjct: 182 DCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPEAVEKELNLTWHAT 241
Query: 205 VCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264
             ++    D + + C L  +T  MIN E +    +   +VN  RG + D + +VR L  G
Sbjct: 242 REDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESG 301
Query: 265 EIAGAGLDVFENEP 278
            +AG   DV+  +P
Sbjct: 302 RLAGYAGDVWFPQP 315

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 16/163 (9%)
Query: 164 VGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV--PYAFYSNVCELAANSDALIICCAL 221
           VG++G+G+IG  VA+   A G  V+    +  P   P+  Y++   +   +D + +   L
Sbjct: 151 VGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPL 210
Query: 222 TDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENE---- 277
              T  MI  + +  + K   ++N  RG ++D   +++ L  GEIAGAGLD    E    
Sbjct: 211 FPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYF 270
Query: 278 ----------PYVPKELLELDNVVLQPHRAVFTSECFVDLCEL 310
                     P   K L ++ NVV+ PH A +T     ++ ++
Sbjct: 271 GHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQI 313

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 121/258 (46%), Gaps = 25/258 (9%)
Query: 91  SAGVNHIHMPECRRRGIAVANAGSIFSDDA-ADAAVGLLIDVWRKISSAD-RFLRQGL-W 147
           + GV++I M + +  G  + N   ++S +A A+ A      + R+  + D +  R  L W
Sbjct: 78  NVGVDNIDMAKAKELGFQITNV-PVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRW 136
Query: 148 SKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV--PYAFY-SN 204
           +      +G ++  + VG+VG G+IG    + ++ FG  V+     + P      +Y  +
Sbjct: 137 APT----IGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDS 192
Query: 205 VCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264
           + +L   +D + +          MIN E +  + ++ +IVNV RG ++D + ++R L  G
Sbjct: 193 LDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG 252
Query: 265 EIAGAGLDVFE------NEPYVPKE--------LLELDNVVLQPHRAVFTSECFVDLCEL 310
           +I G  +DV+E      NE +  KE        L+   NV++ PH A +T+    ++   
Sbjct: 253 KIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYTTHAVRNMVVK 312
Query: 311 AVGNLEALFSNQPLLSPV 328
           A  N   L   +   +PV
Sbjct: 313 AFDNNLELVEGKEAETPV 330

>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase (ycdw) From Salmonella Typhimurium In Complex With Nadp Length = 315

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 90/202 (44%), Gaps = 12/202 (5%)
Query: 122 DAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQ 181
           + AV  ++  +R+         Q LW  + +Y          VGI G G +G +VA+ LQ
Sbjct: 104 EYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEF----SVGIXGAGVLGAKVAESLQ 159
Query: 182 AFGCNVLYNSRSKKPVP----YAFYSNVCELAANSDALIICCALTDQTRRMINREVMLAL 237
           A+G  +   SRS+K  P    Y     +      +  LI     T QT  +IN E++  L
Sbjct: 160 AWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQL 219
Query: 238 GKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPH 295
                ++N+ RG  + E +++  L  G++ GA LDVF  EP +P+E  L     V   PH
Sbjct: 220 PDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEP-LPQESPLWRHPRVAXTPH 278
Query: 296 RAVFTSEC-FVDLCELAVGNLE 316
            A  T     +D     +  LE
Sbjct: 279 IAAVTRPAEAIDYISRTITQLE 300

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 120/258 (46%), Gaps = 25/258 (9%)
Query: 91  SAGVNHIHMPECRRRGIAVANAGSIFSDDA-ADAAVGLLIDVWRKISSAD-RFLRQGL-W 147
           + GV++I M + +  G  + N   ++S +A A+ A      + R+  + D +  R  L W
Sbjct: 78  NVGVDNIDMAKAKELGFQITNV-PVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRW 136
Query: 148 SKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV--PYAFY-SN 204
           +      +G ++  + VG+VG G+IG    + ++ FG  V+     + P      +Y  +
Sbjct: 137 APT----IGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDS 192
Query: 205 VCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG 264
           + +L   +D + +          MIN E +  + ++ +IVNV RG ++D + ++R L  G
Sbjct: 193 LDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG 252
Query: 265 EIAGAGLDVFE------NEPYVPKE--------LLELDNVVLQPHRAVFTSECFVDLCEL 310
           +I G  +DV+E      NE +  KE        L+   NV++ P  A +T+    ++   
Sbjct: 253 KIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVK 312
Query: 311 AVGNLEALFSNQPLLSPV 328
           A  N   L   +   +PV
Sbjct: 313 AFDNNLELVEGKEAETPV 330

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 114/260 (43%), Gaps = 29/260 (11%)
Query: 91  SAGVNHIHMPECRRRGIAVANA-----GSIFSDDAADAAVGLLIDVWRKISSADRFLRQG 145
           + GV++I M + +  G  + N       +I    A  AA  L  D       A R LR  
Sbjct: 78  NVGVDNIDMDKAKELGFQITNVPVYSPNAIAEHAAIQAARVLRQDKRMDEKMAKRDLR-- 135
Query: 146 LWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV--PYAFY- 202
            W+      +G ++  + VG+VG G+IG    + ++ FG  V+     K P      +Y 
Sbjct: 136 -WAPT----IGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFKNPELEKKGYYV 190
Query: 203 SNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLV 262
            ++ +L   +D + +          MIN + +  +    +IVN  RG ++D + ++R L 
Sbjct: 191 DSLDDLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLD 250
Query: 263 RGEIAGAGLDVFE------NEPYVPKE--------LLELDNVVLQPHRAVFTSECFVDLC 308
            G+I G  +D +E      N+ +  KE        L++  NV++ PH A +T+    ++ 
Sbjct: 251 SGKIFGFVMDTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLVTPHTAFYTTHAVRNMV 310
Query: 309 ELAVGNLEALFSNQPLLSPV 328
             A  N   L + +   SPV
Sbjct: 311 VKAFNNNLKLINGEKPDSPV 330

>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 6/206 (2%)
Query: 91  SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKI 150
           +AG++H+             NAGS  +D  A+ A+ LL+  +++I       ++G + + 
Sbjct: 58  TAGLDHLPWESIPPHVTVAGNAGS-NADAVAEFALALLLAPYKRIIQYGEKXKRGDYGRD 116
Query: 151 GDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAA 210
            + PL   + G++V ++GLG IG +V K L A G  V   SR+ K  P+ F +++ E   
Sbjct: 117 VEIPL---IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALR 173
Query: 211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAG 270
            + A +    L   TR ++  + +    ++ + VNVGR  V+D + ++R L         
Sbjct: 174 EARAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFA 233
Query: 271 LDVF--ENEPYVPKELLELDNVVLQP 294
            DV+   N+     E   L NVV  P
Sbjct: 234 SDVWWGRNDFAKDAEFFSLPNVVATP 259

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 107/250 (42%), Gaps = 20/250 (8%)
Query: 87  VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKIS-SADRFLRQG 145
           ++T +AG +HI     +  G  +A       +  A+ AV   + + R  + +  R  ++ 
Sbjct: 73  ILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKN 132
Query: 146 LWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNS--RSKKPVPYAFYS 203
              K+  +    ++    VG+VGLG IG   A+     G  V+       K    Y    
Sbjct: 133 F--KVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQV 190
Query: 204 NVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR 263
           ++ E+   SD + I      +   ++ R+ +  +    I+VN  RG ++D   ++  +  
Sbjct: 191 SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVES 250
Query: 264 GEIAGAGLDVFENEPYVPKELLE---LDN------------VVLQPHRAVFTSECFVDLC 308
           G++ G G DV + E  V  + LE   L+N            V++ PH   +T E   ++ 
Sbjct: 251 GKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMV 310
Query: 309 ELAVGNLEAL 318
           E++  NL+ L
Sbjct: 311 EVSYQNLKDL 320

>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related Protein From Thermoplasma Acidophilum Length = 290

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 109/234 (46%), Gaps = 9/234 (3%)
Query: 91  SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKI 150
           SAGV+HI +       +  +NAG+ +S   A+ A  LL+   + I   +   + G++ + 
Sbjct: 57  SAGVDHIDVNGIPENVVLCSNAGA-YSISVAEHAFALLLAHAKNILENNELXKAGIFRQ- 114
Query: 151 GDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNV-CELA 209
                 + L GK +GI+G G IG +VA   +AFG  V+  +RS         S    +L 
Sbjct: 115 ---SPTTLLYGKALGILGYGGIGRRVAHLAKAFGXRVIAYTRSSVDQNVDVISESPADLF 171
Query: 210 ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGA 269
             SD ++I   LTD+TR  +N  ++    K   IVNV R  V+ + + +  L        
Sbjct: 172 RQSDFVLIAIPLTDKTRGXVNSRLLANARKNLTIVNVARADVVSKPDXIGFLKERSDVWY 231
Query: 270 GLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLC-ELAVGNLEALFSNQ 322
             DV+ NEP + +    L N +L PH A   S    D+  +LA  N+   F  +
Sbjct: 232 LSDVWWNEPEITET--NLRNAILSPHVAGGXSGEIXDIAIQLAFENVRNFFEGE 283

>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase From Rhizobium Etli Length = 365

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 90/208 (43%), Gaps = 9/208 (4%)
Query: 104 RRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQG--LWSKIGDYPLGSKLGG 161
           +RGI V   G +F++  A+  +G  + + R I  AD   ++G  LW   G+      + G
Sbjct: 118 QRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNAS-ARLIAG 176
Query: 162 KRVGIVGLGNIGLQVAKRLQAFGCNVL----YNSRSKKPVPYAFYSNVCELAANSDALII 217
             +GIVG G++G  + + L  F   +     +  RS         +++ ++   SD + +
Sbjct: 177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSXLEENGVEPASLEDVLTKSDFIFV 236
Query: 218 CCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENE 277
             A+T + +R +  E   +  +    + + R  V+D + +   +  G I  A  DV+  E
Sbjct: 237 VAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXAAVSSGHIVAAS-DVYPEE 295
Query: 278 PY-VPKELLELDNVVLQPHRAVFTSECF 304
           P  +   +  L   +   HRA      F
Sbjct: 296 PLPLDHPVRSLKGFIRSAHRAGALDSAF 323

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 104/253 (41%), Gaps = 19/253 (7%)
Query: 87  VVTASAGVNHIHMPECRRRGIAVAN---AGSIFSDDAADAAVGLLIDVWRKISSADRFLR 143
           VV A  G +HI +    + G  ++     GS     A    + +L+ V   + + ++ + 
Sbjct: 88  VVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIIN 147
Query: 144 QGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSKKP------ 196
              W           + GK +  +G G IG +V +RL  F    +LY      P      
Sbjct: 148 HD-WEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEK 206
Query: 197 VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENE 256
           V      N+ EL A +D + +   L   T+ +IN+E++    K   +VN  RGA+    +
Sbjct: 207 VGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAED 266
Query: 257 MVRCLVRGEIAGAGLDVFENEPYVPKELLELD-------NVVLQPHRAVFTSECFVDLCE 309
           +   L  G++ G G DV+  +P  PK+    D          + PH +  T +      +
Sbjct: 267 VAAALESGQLRGYGGDVWFPQP-APKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQ 325
Query: 310 LAVGNLEALFSNQ 322
             V  LE+ F+ +
Sbjct: 326 GTVNILESFFTGK 338

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 103/253 (40%), Gaps = 19/253 (7%)
Query: 87  VVTASAGVNHIHMPECRRRGIAVAN---AGSIFSDDAADAAVGLLIDVWRKISSADRFLR 143
           VV A  G +HI +    + G  ++     GS     A    + +L+ V   + + ++ + 
Sbjct: 89  VVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIIN 148
Query: 144 QGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSKKP------ 196
              W           + GK +  +G G IG +V +RL  F    +LY      P      
Sbjct: 149 HD-WEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEK 207
Query: 197 VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENE 256
           V      N+ EL A +D + +   L   T+ +IN+E++    K   +VN  RGA+    +
Sbjct: 208 VGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAED 267
Query: 257 MVRCLVRGEIAGAGLDVFENEPYVPKELLELD-------NVVLQPHRAVFTSECFVDLCE 309
           +   L  G++ G G DV+  +P  PK+    D          + PH +  T +      +
Sbjct: 268 VAAALESGQLRGYGGDVWFPQP-APKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQ 326
Query: 310 LAVGNLEALFSNQ 322
                LE+ F+ +
Sbjct: 327 GTKNILESFFTGK 339

>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 87/209 (41%), Gaps = 33/209 (15%)
Query: 87  VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL 146
           V TA+AG +H+     ++ GI  + A        A A V  +      ++  D F     
Sbjct: 65  VGTATAGTDHVDEAWLKQAGIGFSAAPGC----NAIAVVEYVFSALLXLAERDGF----- 115
Query: 147 WSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFG-----CNVLYNSRSKKPVPYAF 201
                       L  + +GIVG+GN+G ++  RL+A G     C+    +R  +      
Sbjct: 116 -----------SLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDE----GD 160
Query: 202 YSNVCELAANSDALIICCALTD----QTRRMINREVMLALGKEGIIVNVGRGAVIDENEM 257
           +  + EL   +D L     L      +T  + +  ++  L    I++N  RG V+D   +
Sbjct: 161 FRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAAL 220
Query: 258 VRCLVRGEIAGAGLDVFENEPYVPKELLE 286
           +  L  G+     LDV+E EP +   LLE
Sbjct: 221 LARLNAGQPLSVVLDVWEGEPDLNVALLE 249

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	331
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	1e-131
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	1e-127
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	1e-100
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	8e-93
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	4e-91
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	4e-91
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	5e-91
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	7e-89
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	5e-87
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	3e-85
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	5e-77
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	2e-75
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	2e-73
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	3e-72
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	9e-71
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	5e-68
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	5e-66
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	4e-65
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	5e-64
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	2e-63
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	3e-63
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	3e-62
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	2e-61
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	4e-61
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	7e-61
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	5e-59
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	3e-58
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	8e-51
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	1e-50
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	2e-50
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	2e-45
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	3e-43
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	8e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	1e-04
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	2e-04
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	3e-04
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	4e-04
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	5e-04
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	5e-04
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	6e-04

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  376 bits (969), Expect = e-131
 Identities = 139/337 (41%), Positives = 204/337 (60%), Gaps = 14/337 (4%)

Query: 1   MEIHEEHRDHQSQHL--------PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLE 52
           M     H  H S  +          VL++ P         + + + F+L + +       
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMEAIGVLMMCPMSTYLE---QELDKRFKLFRYWTQPAQ-R 56

Query: 53  QFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANA 112
            FL   A SI A++ + ++    +++  LPKL +V + S G++ + + +C  +G+ V N 
Sbjct: 57  DFLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNT 116

Query: 113 GSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNI 172
             + +DD AD A+GL++ V R+I   D+++R+G W   GD+ L +K  GKRVGI+GLG I
Sbjct: 117 PDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKF-GDFKLTTKFSGKRVGIIGLGRI 175

Query: 173 GLQVAKRLQAFGCNVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINR 231
           GL VA+R +AF C + Y SRSKKP   Y +Y +V ELA+NSD L++ C LT +T  +INR
Sbjct: 176 GLAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINR 235

Query: 232 EVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVV 291
           EV+ ALG +G+++N+GRG  +DE E+V  LV G + GAGLDVFE EP VP++L  L+NVV
Sbjct: 236 EVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVV 295

Query: 292 LQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPV 328
           L PH    T E    + +L VGNLEA FS +PLL+PV
Sbjct: 296 LLPHVGSGTVETRKVMADLVVGNLEAHFSGKPLLTPV 332

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  367 bits (945), Expect = e-127
 Identities = 104/314 (33%), Positives = 173/314 (55%), Gaps = 6/314 (1%)

Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTL 75
           P +L+++P  P  +     + R++ + + Y+++      L +   SI A+   G + ++ 
Sbjct: 31  PDLLLVEPMMPFVM---DELQRNYSVHRLYQAAD--RPALEAALPSIRAVATGGGAGLSN 85

Query: 76  DILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKI 135
           + +  LP L ++     G + + +   RRR I V     + +DD AD  + L++ V R++
Sbjct: 86  EWMEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRV 145

Query: 136 SSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK 195
              DR +R+G W+     PLG    GKR+G++GLG IG  +A R +AFG +V Y +RS  
Sbjct: 146 GDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTL 205

Query: 196 P-VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDE 254
             V +  + +  +LA +SD L +C A +  T+ +++  ++ ALG EGI+VNV RG V+DE
Sbjct: 206 SGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDE 265

Query: 255 NEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN 314
           + ++  L  G IAGAGLDVF NEP +  E     N VL PH+   T E  + + +L + N
Sbjct: 266 DALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGKLVLAN 325

Query: 315 LEALFSNQPLLSPV 328
           L A F+ +   + V
Sbjct: 326 LAAHFAGEKAPNTV 339

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  297 bits (764), Expect = e-100
 Identities = 81/319 (25%), Positives = 149/319 (46%), Gaps = 9/319 (2%)

Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTL 75
            +  + +   P        + + F L    E ++     + S AH  E +  +    +T 
Sbjct: 29  QKAFLCRRFTPAIE---AELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITA 85

Query: 76  DIL-RLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRK 134
           +++ +L P L+ + T S G +HI M   R  GI V +   + SD  A+ A+ L+++  R+
Sbjct: 86  EVIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRR 145

Query: 135 ISSADRFLRQGLWSK-IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRS 193
              ADR +R G W        LG  L G+R+GI G+G IG  +A R + FG  + Y++R+
Sbjct: 146 GYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRT 205

Query: 194 KKP----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRG 249
           +          ++  +  L   SD  +I      + +  ++ + +  + +  +++N+ RG
Sbjct: 206 RLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRG 265

Query: 250 AVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCE 309
            +I+++ ++  L    +  AGLDVF NEP +      LDN+ L PH    T E    +  
Sbjct: 266 DLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAMGW 325

Query: 310 LAVGNLEALFSNQPLLSPV 328
           L +  +EAL  +    + +
Sbjct: 326 LLIQGIEALNQSDVPDNLI 344

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  278 bits (714), Expect = 8e-93
 Identities = 107/323 (33%), Positives = 167/323 (51%), Gaps = 14/323 (4%)

Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQL-LKAYESSLSLEQFLISHAHSIEAILCSGDSPVT 74
           P+V + +  P + +   K +   F++ +   E  +  E  L+     ++A++      + 
Sbjct: 3   PKVFITREIPEVGI---KMLEDEFEVEVWGDEKEIPREI-LLKKVKEVDALVTMLSERID 58

Query: 75  LDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRK 134
            ++    PKLR+V   + G ++I + E  +RGI V N   + +D  AD A  LL+   R 
Sbjct: 59  KEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARH 118

Query: 135 ISSADRFLRQGLWSKIG-----DYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY 189
           +   DRF+R G W K G      + LG  + GK +GI+GLG IG  +AKR + F   +LY
Sbjct: 119 VVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILY 178

Query: 190 NSRSKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVN 245
            SR++K        A +  + +L   SD +++   LT +T  +IN E +  + K  I++N
Sbjct: 179 YSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILIN 238

Query: 246 VGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFV 305
           + RG V+D N +V+ L  G IAGAGLDVFE EPY  +EL +LDNVVL PH    +     
Sbjct: 239 IARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGARE 298

Query: 306 DLCELAVGNLEALFSNQPLLSPV 328
            + EL   NL A    +   + V
Sbjct: 299 GMAELVAKNLIAFKRGEIPPTLV 321

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  274 bits (702), Expect = 4e-91
 Identities = 80/323 (24%), Positives = 149/323 (46%), Gaps = 13/323 (4%)

Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQL-LKAYESSLSLEQFLISHAHSIEAILCSGDSPVT 74
            ++L+  P P   +        S+ +     +  +++++ +I  A S++A+L + +    
Sbjct: 2   KKILITWPLPEAAM---ARARESYDVIAHGDDPKITIDE-MIETAKSVDALLITLNEKCR 57

Query: 75  LDILRLLPK-LRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWR 133
            +++  +P+ ++ + T S G +HI +  C+ RGI V NA    +   A+ A+ LL+   R
Sbjct: 58  KEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSAR 117

Query: 134 KISSADRFLRQGLWSKIG-DYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSR 192
           +    ++ +R   W        +G KL  K +GI G G+IG  +AKR Q F  ++ Y   
Sbjct: 118 RAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDT 177

Query: 193 SKKPVPYA------FYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNV 246
            +            F+ ++  L + S    +    T +TR   N+  + +L +  I+VN 
Sbjct: 178 HRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNT 237

Query: 247 GRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVD 306
            RG ++D   +V  L  G +A AG DVF  EP + +   +L N  L PH     ++   D
Sbjct: 238 ARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQARED 297

Query: 307 LCELAVGNLEALFSNQPLLSPVT 329
           +   A   ++ALF    +   + 
Sbjct: 298 MAHQANDLIDALFGGADMSYALA 320

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  273 bits (701), Expect = 4e-91
 Identities = 94/314 (29%), Positives = 158/314 (50%), Gaps = 7/314 (2%)

Query: 17  RVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLD 76
           RVLV +  P   L     +      ++ +      +  L+        ++ + +  +  +
Sbjct: 2   RVLVTRTLPGKAL---DRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAE 58

Query: 77  ILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKIS 136
           ++     L+++   S GV+H+ +   R RGI V +   + ++  AD  + LL+ V R++ 
Sbjct: 59  VMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVV 118

Query: 137 SADRFLRQGLWSK-IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK 195
               + R GLW     +  LG  L G  +G+VG+G IG  VAKR  AFG  V+Y++R+ K
Sbjct: 119 EGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPK 178

Query: 196 PVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDEN 255
           P+P   + ++ EL   +D + +   LT +T R++NRE + A+ +  I++N  RGA++D  
Sbjct: 179 PLP-YPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTE 237

Query: 256 EMVRCLVRGEIAGAGLDVFENEPYVP-KELLELDNVVLQPHRAVFTSECFVDLCELAVGN 314
            +V  L RG + GAGLDV + EP  P   L  L N V+ PH           + E+AV N
Sbjct: 238 ALVEAL-RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVEN 296

Query: 315 LEALFSNQPLLSPV 328
           L A+   +   +PV
Sbjct: 297 LLAVLEGREPPNPV 310

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  274 bits (703), Expect = 5e-91
 Identities = 83/335 (24%), Positives = 141/335 (42%), Gaps = 22/335 (6%)

Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESS--LSLEQFLISHAHSIEAILCSGDSPV 73
           PRVL++  P            + F+++ A  ++     +          EAI+       
Sbjct: 4   PRVLLLGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENG 63

Query: 74  TL------DILRLLPK-LRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVG 126
           T       D++  LP  L++   A AG + + +     RG+A AN+        +D A+ 
Sbjct: 64  TESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALY 123

Query: 127 LLIDVWRKISSADRFLRQGLWSKIGDY-----PLGSKLGGKRVGIVGLGNIGLQVAKR-L 180
           L++ V+R  S ++R  R G                    G  +G VGLG I  ++A++ +
Sbjct: 124 LILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAV 183

Query: 181 QAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234
              G  ++Y   +         +      ++ ELA  SD + +       T  +I+    
Sbjct: 184 HGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFF 243

Query: 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQP 294
            A+     IVN  RG VI ++ ++  L  G++  AGLDV E EP V KEL+E+ +V L  
Sbjct: 244 AAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTT 303

Query: 295 HRAVFTSECFVDLCELAVGNLEALFSN-QPLLSPV 328
           H      E F +   L + N++      +PLL+P 
Sbjct: 304 HIGGVAIETFHEFERLTMTNIDRFLLQGKPLLTPA 338

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  267 bits (685), Expect = 7e-89
 Identities = 64/281 (22%), Positives = 121/281 (43%), Gaps = 8/281 (2%)

Query: 52  EQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVAN 111
           + F I     +  +  +  S +T + L  +P+L+ +   +AG++H+         + VA 
Sbjct: 19  KYFKIVRGGDLGNVEAALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPPH-VTVAG 77

Query: 112 AGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGN 171
                +D  A+ A+ LL+  +++I      +++G + +         + G++V ++GLG 
Sbjct: 78  NAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGR---DVEIPLIQGEKVAVLGLGE 134

Query: 172 IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINR 231
           IG +V K L A G  V   SR+ K  P+ F +++ E    + A +    L   TR ++  
Sbjct: 135 IGTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKY 194

Query: 232 EVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPK--ELLELDN 289
           + +  + ++ + VNVGR  V+D + ++R L          DV+       K  E   L N
Sbjct: 195 QHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPN 254

Query: 290 VVLQPH--RAVFTSECFVDLCELAVGNLEALFSNQPLLSPV 328
           VV  P           +  +   AV NL    +     +  
Sbjct: 255 VVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGRPRNIA 295

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  263 bits (675), Expect = 5e-87
 Identities = 91/325 (28%), Positives = 152/325 (46%), Gaps = 15/325 (4%)

Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQL---LKAYESSLSLEQFLISHAHSIEAILCSGDSP 72
            +V V +  P         ++R+          +  +  ++ L         +LC     
Sbjct: 9   MKVFVTRRIPAEGR---VALARAADCEVEQWDSDEPIPAKE-LERGVAGAHGLLCLLSDH 64

Query: 73  VTLDIL-RLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDV 131
           V   IL      L+++ T S G++H+ + E ++RGI V     + +D  A+ AV LL+  
Sbjct: 65  VDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTT 124

Query: 132 WRKISSADRFLRQGLWSK-IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN-VLY 189
            R++  A   ++ G W+     +  G  L    VGI+GLG IG  +A+RL+ FG    LY
Sbjct: 125 CRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLY 184

Query: 190 NSRSKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVN 245
             R  +P       A + +  ELAA SD +++ C+LT  T  + N++    + +  + +N
Sbjct: 185 TGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFIN 244

Query: 246 VGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPY-VPKELLELDNVVLQPHRAVFTSECF 304
           + RG V++++++ + L  G+IA AGLDV   EP      LL L N V+ PH    T    
Sbjct: 245 ISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTR 304

Query: 305 VDLCELAVGNLEALFSNQPLLSPVT 329
             +  LA  NL A    +P+ S + 
Sbjct: 305 NTMSLLAANNLLAGLRGEPMPSELK 329

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  259 bits (663), Expect = 3e-85
 Identities = 80/328 (24%), Positives = 149/328 (45%), Gaps = 20/328 (6%)

Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQL-LKAYESSLSLEQFLISHAHSIEAILCSGDSPVT 74
           P++++        L   + ++   +L     +S+L+ E+ ++      +A++      V 
Sbjct: 3   PKLVITHRVHEEIL---QLLAPHCELITNQTDSTLTREE-ILRRCRDAQAMMAFMPDRVD 58

Query: 75  LDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRK 134
            D L+  P+LR++  A  G ++  +  C  RG+ +     + +   A+ A+GL + + R 
Sbjct: 59  ADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRH 118

Query: 135 ISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK 194
           + +AD F+R G +        G+ L    VG +G+G IGL +A RLQ +G  + Y+    
Sbjct: 119 LRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKA 178

Query: 195 KPVPY-----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG-IIVNVGR 248
                            EL A+SD +++   L   T  ++N E+ LAL + G ++VN  R
Sbjct: 179 LDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAEL-LALVRPGALLVNPCR 237

Query: 249 GAVIDENEMVRCLVRGEIAGAGLDVFENE--------PYVPKELLELDNVVLQPHRAVFT 300
           G+V+DE  ++  L RG++ G   DVFE E          +   LL   N +  PH     
Sbjct: 238 GSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAV 297

Query: 301 SECFVDLCELAVGNLEALFSNQPLLSPV 328
               +++   A  N+    + +  ++ V
Sbjct: 298 RAVRLEIERCAAQNILQALAGERPINAV 325

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  238 bits (609), Expect = 5e-77
 Identities = 97/324 (29%), Positives = 151/324 (46%), Gaps = 20/324 (6%)

Query: 16  PRVLVIK--PPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPV 73
           P+V V+       L                  E        L       + I+ S  + +
Sbjct: 3   PKVGVLLKMKREALEELKKYADVEIILYPSGEE--------LKGVIGRFDGIIVSPTTKI 54

Query: 74  TLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWR 133
           T ++L    +L+++   SAG ++I + E  +RGI V     + S+  A+  VGL+I++ R
Sbjct: 55  TREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMR 114

Query: 134 KISSADRFLRQGLWSKIG----DYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY 189
           KI  AD+F+R+G W         +     L GK+VGI+G+G IG  +A+RL  FG  + Y
Sbjct: 115 KIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYY 174

Query: 190 NSRSKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVN 245
            SR +K        A Y ++ EL   SD +I+   LT  T  +IN E  +   +   +VN
Sbjct: 175 WSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEE-RVKKLEGKYLVN 233

Query: 246 VGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELD-NVVLQPHRAVFTSECF 304
           +GRGA++DE  +   + +G++ G   DVFE EP    EL + +   VL PH A    E  
Sbjct: 234 IGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQ 293

Query: 305 VDLCELAVGNLEALFSNQPLLSPV 328
            D+   AV NL  +   +     V
Sbjct: 294 EDVGFRAVENLLKVLRGEVPEDLV 317

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  236 bits (603), Expect = 2e-75
 Identities = 73/324 (22%), Positives = 124/324 (38%), Gaps = 15/324 (4%)

Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCS--GDSPV 73
           P  L+      L L   K++  +   L         +          + ++      + +
Sbjct: 46  PGQLLGSVSGELGL--RKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYL 103

Query: 74  TLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWR 133
           T + +     L+L +TA  G +H+ +     R + VA      S   A+  V +++ + R
Sbjct: 104 TPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVR 163

Query: 134 KISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRS 193
               +  + R+G W+          L    VG V  G IGL V +RL  F  ++ Y  R 
Sbjct: 164 NYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRH 223

Query: 194 KKPVPYA------FYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG-IIVNV 246
           + P          +++   ++    D + + C L  +T  MIN E  L L K G  IVN 
Sbjct: 224 RLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDE-TLKLFKRGAYIVNT 282

Query: 247 GRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTSECF 304
            RG + D + + R L  G +AG   DV+  +P  PK+     +    + PH +  T    
Sbjct: 283 ARGKLCDRDAVARALESGRLAGYAGDVWFPQP-APKDHPWRTMPYNGMTPHISGTTLTAQ 341

Query: 305 VDLCELAVGNLEALFSNQPLLSPV 328
                     LE  F  +P+    
Sbjct: 342 ARYAAGTREILECFFEGRPIRDEY 365

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  229 bits (585), Expect = 2e-73
 Identities = 56/270 (20%), Positives = 120/270 (44%), Gaps = 9/270 (3%)

Query: 65  ILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAA 124
           ++      +   + R   +L+ V   SAGV+++ +   +  G+ VAN   I +D  +++ 
Sbjct: 43  VMYGNHPLLKTILARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESV 102

Query: 125 VGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFG 184
           +  ++ V R   +A    R             S L G+++ I G G IG  +A +  A G
Sbjct: 103 LAAMLSVVRGYHAAWLNQRGARQWA--LPMTTSTLTGQQLLIYGTGQIGQSLAAKASALG 160

Query: 185 CNVLYNSRSKKPVPYAF----YSNVCELAANSDALIICCALTDQTRRMINREVMLALGKE 240
            +V+  + +  P  +      ++   +  A ++ ++    LT  T  + + E+     ++
Sbjct: 161 MHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQ 220

Query: 241 GIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAV 298
            +++N+GRG  +D   ++  L   +++ A LDV E EP +P +  L + D+V++ PH + 
Sbjct: 221 PMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEP-LPTDHPLWQRDDVLITPHISG 279

Query: 299 FTSECFVDLCELAVGNLEALFSNQPLLSPV 328
             +     +  +   N      +  L+   
Sbjct: 280 QIAHFRATVFPIFAANFAQFVKDGTLVRNQ 309

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  224 bits (573), Expect = 3e-72
 Identities = 74/257 (28%), Positives = 121/257 (47%), Gaps = 11/257 (4%)

Query: 70  DSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLI 129
           ++ V  D   L  + +++   SAGV+HI +       +  +NAG+ +S   A+ A  LL+
Sbjct: 36  EAQVIKDRYVLGKRTKMIQAISAGVDHIDVNGIPENVVLCSNAGA-YSISVAEHAFALLL 94

Query: 130 DVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY 189
              + I   +  ++ G++ +       + L GK +GI+G G IG +VA   +AFG  V+ 
Sbjct: 95  AHAKNILENNELMKAGIFRQS----PTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIA 150

Query: 190 NSRSKKPVPY-AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG-IIVNVG 247
            +RS           +  +L   SD ++I   LTD+TR M+N   +LA  ++   IVNV 
Sbjct: 151 YTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSR-LLANARKNLTIVNVA 209

Query: 248 RGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVD- 306
           R  V+ + +M+  L          DV+ NEP        L N +L PH A   S   +D 
Sbjct: 210 RADVVSKPDMIGFLKERSDVWYLSDVWWNEP--EITETNLRNAILSPHVAGGMSGEIMDI 267

Query: 307 LCELAVGNLEALFSNQP 323
             +LA  N+   F  + 
Sbjct: 268 AIQLAFENVRNFFEGEG 284

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  215 bits (550), Expect = 5e-68
 Identities = 74/336 (22%), Positives = 147/336 (43%), Gaps = 24/336 (7%)

Query: 11  QSQHLPRVLV---IKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILC 67
           +  H+P V +         + +  D            +  + S ++      +     L 
Sbjct: 17  RGSHMPLVALLDGRDCTVEMPILKDVATVA-------FCDAQSTQEIHEKVLNEAVGALM 69

Query: 68  SGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGL 127
                +T + L     LR++V   +G ++I +      GIAV N  +   ++ AD+ +  
Sbjct: 70  YHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCH 129

Query: 128 LIDVWRKISSADRFLRQGLWSKIGDYP-----LGSKLGGKRVGIVGLGNIGLQVAKRLQA 182
           +++++R+ +   + LR+G   +  +         +++ G+ +GI+GLG +G  VA R +A
Sbjct: 130 ILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKA 189

Query: 183 FGCNVLYNSRSKKPVPYA-----FYSNVCELAANSDALIICCALTDQTRRMINREVMLAL 237
           FG NVL+                  S + +L  +SD + + C L +    +IN    +  
Sbjct: 190 FGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDF-TVKQ 248

Query: 238 GKEG-IIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQP 294
            ++G  +VN  RG ++DE  + + L  G I GA LDV E+EP+   +  L +  N++  P
Sbjct: 249 MRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP 308

Query: 295 HRAVFTSECFVDLCELAVGNLEALFSNQPLLSPVTA 330
           H A ++ +  +++ E A   +    + +   S    
Sbjct: 309 HAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNC 344

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  210 bits (536), Expect = 5e-66
 Identities = 63/309 (20%), Positives = 128/309 (41%), Gaps = 29/309 (9%)

Query: 42  LKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPK--LRLVVTASAGVNHIHM 99
           ++  +  L+ E   ++ A   + ++         + L+ L    +  +   + GV++I M
Sbjct: 29  VEYTDKLLTPE--TVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDM 86

Query: 100 PECRRRGIAVAN--AGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGS 157
            + +  G  + N    S  +   A+ A      + R+  + D  + +          +G 
Sbjct: 87  AKAKELGFQITNVPVYSPNA--IAEHAAIQAARILRQDKAMDEKVARHDLRWAPT--IGR 142

Query: 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAF---YSNVCELAANSDA 214
           ++  + VG+VG G+IG    + ++ FG  V+     + P          ++ +L   +D 
Sbjct: 143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADV 202

Query: 215 LIICCALTDQTRRMINREVMLALGKEG-IIVNVGRGAVIDENEMVRCLVRGEIAGAGLDV 273
           + +          MIN E  +A  K+  +IVNV RG ++D + ++R L  G+I G  +DV
Sbjct: 203 ISLHVPDVPANVHMINDE-SIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDV 261

Query: 274 FENEPYVP--------------KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALF 319
           +E E  +                +L+   NV++ P  A +T+    ++   A  N   L 
Sbjct: 262 YEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELV 321

Query: 320 SNQPLLSPV 328
             +   +PV
Sbjct: 322 EGKEAETPV 330

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  208 bits (531), Expect = 4e-65
 Identities = 74/282 (26%), Positives = 131/282 (46%), Gaps = 17/282 (6%)

Query: 55  LISHAHSIEAILCSGDSP--VTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANA 112
           L  H   +  ++ +   P  VT + ++    L+L++TA  G +HI +      G+ VA  
Sbjct: 56  LEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEV 115

Query: 113 --GSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLG 170
              ++ S   A+  +  ++ + R        + +G W+  G       L GK +G VG G
Sbjct: 116 TGSNVVS--VAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAG 173

Query: 171 NIGLQVAKRLQAFGCNVLYNSRSKKPVPYA------FYSNVCELAANSDALIICCALTDQ 224
            IG  + +RL+ FGCN+LY+ R +            F  ++ E+    D ++I   LT++
Sbjct: 174 RIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEK 233

Query: 225 TRRMINREVMLALGKEG-IIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE 283
           TR M N+E ++   K+G +IVN  RGA+++   +V  +  G I G   DV++ +P  PK+
Sbjct: 234 TRGMFNKE-LIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQP-APKD 291

Query: 284 --LLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQP 323
                + N  + PH +  T +  +         LE  F  + 
Sbjct: 292 HPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGED 333

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  204 bits (522), Expect = 5e-64
 Identities = 73/312 (23%), Positives = 132/312 (42%), Gaps = 31/312 (9%)

Query: 42  LKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLL--PKLRLVVTASAGVNHIHM 99
           L+ +   L      +  A   + I     +P    +   +    ++ +   + G ++I M
Sbjct: 27  LEYHTEFLDEN--TVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDM 84

Query: 100 PECRRRGIAVAN--AGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGS 157
              ++ GI ++N  A S  +   A+ A+   + + R +      L+ G + K G + +G 
Sbjct: 85  TAMKQYGIRLSNVPAYSPAA--IAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF-IGK 141

Query: 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL----YNSRSKKPVPYAFYSNVCELAANSD 213
           +LG + VG++G G+IG    K  + FG  V+    Y  +   P     Y ++ +L   SD
Sbjct: 142 ELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHP--DFDYVSLEDLFKQSD 199

Query: 214 ALIICCALTDQTRRMINREVMLALGKEG-IIVNVGRGAVIDENEMVRCLVRGEIAGAGLD 272
            + +     +Q   +IN      L K G I++N  R  +ID   M+  L  G++AG G+D
Sbjct: 200 VIDLHVPGIEQNTHIINEA-AFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGID 258

Query: 273 VFENEPYVP--------------KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEAL 318
            +E E                   ELL + NVVL PH A +T     ++   ++ +L   
Sbjct: 259 TYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDF 318

Query: 319 FSNQPLLSPVTA 330
            +     + VT 
Sbjct: 319 LTKGETSTEVTG 330

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  202 bits (516), Expect = 2e-63
 Identities = 105/301 (34%), Positives = 152/301 (50%), Gaps = 30/301 (9%)

Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTL 75
            +VLV  P     +          +++  YE     ++ L+     +EAI+      VT 
Sbjct: 4   MKVLVAAPLHEKAI--QVLKDAGLEVI--YEEYPDEDR-LVELVKDVEAIIVRSKPKVTR 58

Query: 76  DILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANA--GSIFSDDAADAAVGLLIDVWR 133
            ++   PKL+++  A  G+++I +   + +GI V NA   S  S   A+ AVGL+  V R
Sbjct: 59  RVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRS--VAELAVGLMFSVAR 116

Query: 134 KISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRS 193
           KI+ ADR +R+G+W+K  +  +G +L GK +GI+G G IG QVAK   A G N+L     
Sbjct: 117 KIAFADRKMREGVWAK-KEA-MGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYD-- 172

Query: 194 KKPVPY----------AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG-I 242
               PY            + ++  L   SD + I   L + T  +IN E  L L K+  I
Sbjct: 173 ----PYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEE-RLKLMKKTAI 227

Query: 243 IVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP-KELLELDNVVLQPHRAVFTS 301
           ++N  RG V+D N +V+ L  G IAGAGLDVFE EP      L + DNVVL PH    T 
Sbjct: 228 LINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTV 287

Query: 302 E 302
           E
Sbjct: 288 E 288

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  203 bits (519), Expect = 3e-63
 Identities = 75/271 (27%), Positives = 110/271 (40%), Gaps = 21/271 (7%)

Query: 72  PVTLDILRLLPKLRLVVTA----SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGL 127
            VT  +L  LPKL+++            HI +  C  +G+ V           A+    L
Sbjct: 60  RVTRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKG-SPVAPAELTWAL 118

Query: 128 LIDVWRKISSADRFLRQGLWSKIGDY--------PLGSKLGGKRVGIVGLGNIGLQVAKR 179
           ++   R+I      L+ G W + G           +G  L G+ +GI G G IG  VA  
Sbjct: 119 VMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGY 178

Query: 180 LQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234
            +AFG NVL   R           +A   +   L   SD L +   L D+TR +I     
Sbjct: 179 GRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVA-D 237

Query: 235 LALGKEG-IIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE-LLELDNVVL 292
           L   K   + VN  R  +++EN MV  L RG    A +DVFE EP +    LL ++N + 
Sbjct: 238 LTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCIC 297

Query: 293 QPHRAVFTSECFVDLCELAVGNLEALFSNQP 323
            PH      E +     +A  N+  +     
Sbjct: 298 TPHIGYVERESYEMYFGIAFQNILDILQGNV 328

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  200 bits (511), Expect = 3e-62
 Identities = 63/311 (20%), Positives = 123/311 (39%), Gaps = 31/311 (9%)

Query: 42  LKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKL--RLVVTASAGVNHIHM 99
           +K     L+ ++     A   +A++  G+       L +  KL  + ++T +AG +HI  
Sbjct: 27  IKCVPDYLNTKE-TAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDK 85

Query: 100 PECRRRGIAVAN--AGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGS 157
              +  G  +A     S  +   A+ AV   + + R  +       +  +          
Sbjct: 86  EYAKELGFPMAFVPRYSPNA--IAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFM-FSK 142

Query: 158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL----YNSRSKKPVPYAFYSNVCELAANSD 213
           ++    VG+VGLG IG   A+     G  V+    +  +  +   Y    ++ E+   SD
Sbjct: 143 EVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIED--YCTQVSLDEVLEKSD 200

Query: 214 ALIICCALTDQTRRMINREVMLALGKEG-IIVNVGRGAVIDENEMVRCLVRGEIAGAGLD 272
            + I      +   ++ R+  L   K+G I+VN  RG ++D   ++  +  G++ G G D
Sbjct: 201 IITIHAPYIKENGAVVTRD-FLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCD 259

Query: 273 VFENE---------------PYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEA 317
           V + E               P   K +     V++ PH   +T E   ++ E++  NL+ 
Sbjct: 260 VLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKD 319

Query: 318 LFSNQPLLSPV 328
           L       + +
Sbjct: 320 LAETGDCPNKI 330

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  199 bits (507), Expect = 2e-61
 Identities = 73/318 (22%), Positives = 129/318 (40%), Gaps = 26/318 (8%)

Query: 32  DKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSP--VTLDILRLLPKLRLVVT 89
           +    +  +L+   +        L  H    + I+ +   P  +T + +    KL+LVV 
Sbjct: 32  NWLKDQGHELITTSDKEGG-NSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVV 90

Query: 90  ASAGVNHIHMPECRRRG--IAVANA--GSIFSDDAADAAVGLLIDVWRKISSADRFLRQG 145
           A  G +HI +    + G  I+V      ++ S   A+  V  ++ + R    A   +   
Sbjct: 91  AGVGSDHIDLDYINQTGKKISVLEVTGSNVVS--VAEHVVMTMLVLVRNFVPAHEQIINH 148

Query: 146 LWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YNSRSKKPVPYA---- 200
            W           + GK +  +G G IG +V +RL  F    L Y      P        
Sbjct: 149 DWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVG 208

Query: 201 --FYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG-IIVNVGRGAVIDENEM 257
                N+ EL A +D + +   L   T+ +IN+E +L+  K+G  +VN  RGA+    ++
Sbjct: 209 ARRVENIEELVAQADIVTVNAPLHAGTKGLINKE-LLSKFKKGAWLVNTARGAICVAEDV 267

Query: 258 VRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNV-----VLQPHRAVFTSECFVDLCEL 310
              L  G++ G G DV+  +P  PK+    ++ N       + PH +  T +      + 
Sbjct: 268 AAALESGQLRGYGGDVWFPQP-APKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQG 326

Query: 311 AVGNLEALFSNQPLLSPV 328
            V  LE+ F+ +    P 
Sbjct: 327 TVNILESFFTGKFDYRPQ 344

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  197 bits (503), Expect = 4e-61
 Identities = 86/295 (29%), Positives = 144/295 (48%), Gaps = 17/295 (5%)

Query: 15  LPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVT 74
           L +VL+     P             Q++   + +LS E+ LI+     E ++    + VT
Sbjct: 26  LRKVLISDSLDPCCR--KILQDGGLQVV--EKQNLSKEE-LIAELQDCEGLIVRSATKVT 80

Query: 75  LDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANA--GSIFSDDAADAAVGLLIDVW 132
            D++    KL++V  A  GV+++ +    R+GI V N   G+  S  AA+   G+++ + 
Sbjct: 81  ADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLS--AAELTCGMIMCLA 138

Query: 133 RKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL---- 188
           R+I  A   ++ G W +   + +G++L GK +GI+GLG IG +VA R+Q+FG   +    
Sbjct: 139 RQIPQATASMKDGKWER-KKF-MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDP 196

Query: 189 YNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG-IIVNVG 247
             S             + E+    D + +   L   T  ++N     A  K+G  +VN  
Sbjct: 197 IISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDN-TFAQCKKGVRVVNCA 255

Query: 248 RGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSE 302
           RG ++DE  ++R L  G+ AGA LDVF  EP   + L++ +NV+  PH    T E
Sbjct: 256 RGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKE 310

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  196 bits (500), Expect = 7e-61
 Identities = 78/301 (25%), Positives = 138/301 (45%), Gaps = 22/301 (7%)

Query: 12  SQHLPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDS 71
           + +  + L+  P   + +       +  Q+   Y   +S E+ L++   + + I+    +
Sbjct: 2   AIYTVKALITDPIDEILI--KTLREKGIQVD--YMPEISKEE-LLNIIGNYDIIVVRSRT 56

Query: 72  PVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANA--GSIFSDDAADAAVGLLI 129
            VT D++    KL+++  A  G+++I   E  +R I V  A   S  S  A +  +GL+I
Sbjct: 57  KVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDS--AVELTIGLMI 114

Query: 130 DVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL- 188
              RK+ ++    + G++ KI     G +L GK +GIVG G IG +V     A G  VL 
Sbjct: 115 AAARKMYTSMALAKSGIFKKI----EGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLA 170

Query: 189 ---YNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG-IIV 244
               + R K     A   ++ EL  NSD + +   ++   + +I+      L K+  IIV
Sbjct: 171 YDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYP-QFELMKDNVIIV 229

Query: 245 NVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEP---YVPKELLELDNVVLQPHRAVFTS 301
           N  R   ++   ++  + +G++     DVF NEP       ELL+ + V++  H    T 
Sbjct: 230 NTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTK 289

Query: 302 E 302
           E
Sbjct: 290 E 290

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  197 bits (502), Expect = 5e-59
 Identities = 89/298 (29%), Positives = 145/298 (48%), Gaps = 26/298 (8%)

Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQLLKA-----YESSLSLEQFLISHAHSIEAILCSGD 70
           P VL+     P T+            L       +      ++ L++     +A+L    
Sbjct: 5   PVVLIADKLAPSTV----------AALGDQVEVRWVDGPDRDK-LLAAVPEADALLVRSA 53

Query: 71  SPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANA--GSIFSDDAADAAVGLL 128
           + V  ++L   PKL++V  A  G++++ +     RG+ V NA   +I S  AA+ A+ LL
Sbjct: 54  TTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHS--AAEHALALL 111

Query: 129 IDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL 188
           +   R+I +AD  LR+  W +   +  G+++ GK VG+VGLG IG  VA+R+ AFG  V+
Sbjct: 112 LAASRQIPAADASLREHTWKR-SSF-SGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVV 169

Query: 189 ----YNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIV 244
               Y S ++         ++ +L A +D + +    T +T  +I++E +       IIV
Sbjct: 170 AYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIV 229

Query: 245 NVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSE 302
           N  RG ++DE  +   +  G +  AGLDVF  EP     L EL  VV+ PH    T+E
Sbjct: 230 NAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAE 287

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  189 bits (483), Expect = 3e-58
 Identities = 66/266 (24%), Positives = 114/266 (42%), Gaps = 14/266 (5%)

Query: 69  GDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLL 128
            +      +L    KL    +  AGV+ + +    RR   + N   IF    ++   G L
Sbjct: 53  AEPARAKPLLAKANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHL 111

Query: 129 IDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL 188
           + + R++       +Q LW       L     G+ + I+G G+IG  +A   + FG  VL
Sbjct: 112 LSLMRQLPLYREQQKQRLWQSHPYQGLK----GRTLLILGTGSIGQHIAHTGKHFGMKVL 167

Query: 189 YNSRSKKPVPY--AFYS--NVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIV 244
             SRS +        Y    + ++ A +D ++     T +T  +             I+ 
Sbjct: 168 GVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILF 227

Query: 245 NVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTSE 302
           NVGRG  I+E +++  L  G++  A LDVFE EP +P +  L    N+++ PH + ++  
Sbjct: 228 NVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEP-LPADSPLWGQPNLIITPHNSAYSFP 286

Query: 303 CFVDLCELAVGNLEALFSNQPLLSPV 328
              D+ ++ V N       QPL   +
Sbjct: 287 --DDVAQIFVRNYIRFIDGQPLDGKI 310

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  170 bits (432), Expect = 8e-51
 Identities = 67/263 (25%), Positives = 111/263 (42%), Gaps = 19/263 (7%)

Query: 78  LRLLPKLRLVVTASAGVNHI-----HMPECRRRGIAVANA-GSIFSDDAADAAVGLLIDV 131
           +    +L+ V    AGV+ I       PE     I +     +       + AV  ++  
Sbjct: 54  MLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHW 113

Query: 132 WRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNS 191
           +R+         Q LW  + +Y          VGI+G G +G +VA+ LQA+G  +   S
Sbjct: 114 FRRFDDYQALKNQALWKPLPEYTRE----EFSVGIMGAGVLGAKVAESLQAWGFPLRCWS 169

Query: 192 RSKKPVPY--AFYSN--VCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVG 247
           RS+K  P   ++     +      +  LI     T QT  +IN E++  L     ++N+ 
Sbjct: 170 RSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLA 229

Query: 248 RGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE--LLELDNVVLQPHRAVFTSECFV 305
           RG  + E +++  L  G++ GA LDVF  EP +P+E  L     V + PH A  T     
Sbjct: 230 RGVHVQEADLLAALDSGKLKGAMLDVFSQEP-LPQESPLWRHPRVAMTPHIAAVTRP--A 286

Query: 306 DLCELAVGNLEALFSNQPLLSPV 328
           +  +     +  L   +P+   V
Sbjct: 287 EAIDYISRTITQLEKGEPVTGQV 309

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  172 bits (438), Expect = 1e-50
 Identities = 69/294 (23%), Positives = 127/294 (43%), Gaps = 26/294 (8%)

Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTL 75
            + L+++      L  +   +  +  ++ ++ +L  EQ L         I     + +T 
Sbjct: 5   IKFLLVEGVHQKAL--ESLRAAGYTNIEFHKGALDDEQ-LKESIRDAHFIGLRSRTHLTE 61

Query: 76  DILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANA--GSIFSDDAADAAVGLLIDVWR 133
           D++    KL  +   + G N + +    +RGI V NA   +  S   A+  +G L+ + R
Sbjct: 62  DVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRS--VAELVIGELLLLLR 119

Query: 134 KISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRS 193
            +  A+    +G+ +K+       +  GK++GI+G G+IG Q+    ++ G  V +    
Sbjct: 120 GVPEANAKAHRGVGNKLAA--GSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYD-- 175

Query: 194 KKPVPYAFYSNVC------ELAANSDALIICCALTDQTRRMINREVMLALGKEG-IIVNV 246
                     N        +L   SD + +       T+ M+  +  ++L K G +++N 
Sbjct: 176 --IENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAK-EISLMKPGSLLINA 232

Query: 247 GRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE-----LLELDNVVLQPH 295
            RG V+D   +   L    +AGA +DVF  EP    +     L E DNV+L PH
Sbjct: 233 SRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPH 286

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  172 bits (437), Expect = 2e-50
 Identities = 83/301 (27%), Positives = 125/301 (41%), Gaps = 26/301 (8%)

Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTL 75
             VL+++      +  + F S  +  +     +L     LI    S   I     + +T 
Sbjct: 16  INVLLLEGISQTAV--EYFKSSGYTNVTHLPKALDKAD-LIKAISSAHIIGIRSRTQLTE 72

Query: 76  DILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANA--GSIFSDDAADAAVGLLIDVWR 133
           +I     +L  V   S G N + +   R+RGI V NA   +  S   A+  +G +I + R
Sbjct: 73  EIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRS--VAELVIGEIIMLMR 130

Query: 134 KISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRS 193
           +I         G W K        ++ GK +GIVG GNIG QV    ++ G  V Y    
Sbjct: 131 RIFPRSVSAHAGGWEKTAI--GSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYD-- 186

Query: 194 KKPVPYAFYSNVC------ELAANSDALIICCALTDQTRRMINREVMLALGKEG-IIVNV 246
                   Y NV       EL   SD + +    +  T ++I     L   K+G  ++N 
Sbjct: 187 --TSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAK-LRKMKKGAFLINN 243

Query: 247 GRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE-----LLELDNVVLQPHRAVFTS 301
            RG+ +D   + + L  G +AGA +DVF  EP    E     L  L+NV+L PH    T 
Sbjct: 244 ARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTE 303

Query: 302 E 302
           E
Sbjct: 304 E 304

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  157 bits (399), Expect = 2e-45
 Identities = 53/230 (23%), Positives = 96/230 (41%), Gaps = 36/230 (15%)

Query: 83  KLRLVVTASAGVNHIHMPECRRRGIAVANA--GSIFSDDAADAAVGLLIDVWRKISSADR 140
            +  V TA+AG +H+     ++ GI  + A   +  +    +     L+ +  +      
Sbjct: 61  PINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIA--VVEYVFSALLMLAER------ 112

Query: 141 FLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNS--RSKKPVP 198
                          G  L  + +GIVG+GN+G ++  RL+A G   L     R+ +   
Sbjct: 113 --------------DGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDE 158

Query: 199 YAFYSNVCELAANSDALIICC--ALTD----QTRRMINREVMLALGKEGIIVNVGRGAVI 252
             F + + EL   +D  ++     L      +T  + +  ++  L    I++N  RG V+
Sbjct: 159 GDFRT-LDELVQEAD--VLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVV 215

Query: 253 DENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSE 302
           D   ++  L  G+     LDV+E EP +   LLE  ++    H A +T E
Sbjct: 216 DNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVDIGT-SHIAGYTLE 264

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  152 bits (385), Expect = 3e-43
 Identities = 56/230 (24%), Positives = 91/230 (39%), Gaps = 36/230 (15%)

Query: 83  KLRLVVTASAGVNHIHMPECRRRGIAVANA--GSIFSDDAADAAVGLLIDVWRKISSADR 140
            +R V T + G +H+ +      GIA ++A   +       D  +G L+       +   
Sbjct: 58  PVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARG--VVDYVLGCLL-------AMAE 108

Query: 141 FLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYN--SRSKKPVP 198
                          G+ L  +  G+VG G +G ++ + L+  G  VL     R  +   
Sbjct: 109 VR-------------GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAREPD 155

Query: 199 YAFYSNVCELAANSDALIICC--ALTDQ----TRRMINREVMLALGKEGIIVNVGRGAVI 252
             F S +  L A +D  +I     L       TR +++   + AL     +VN  RGAV+
Sbjct: 156 GEFVS-LERLLAEAD--VISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVV 212

Query: 253 DENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSE 302
           D   + R L  G      LDV+E EP      L    ++  PH A ++ E
Sbjct: 213 DNQALRRLLEGGADLEVALDVWEGEP-QADPELAARCLIATPHIAGYSLE 261

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 66.9 bits (163), Expect = 8e-13
 Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 13/121 (10%)

Query: 159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAF--------YSNVCELAA 210
           + G  V ++GLG +G+ VA++  A G  V   +R    +             S   +   
Sbjct: 153 IHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELR 212

Query: 211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAG 270
           + D  I           ++   V+  +     ++++       +           +   G
Sbjct: 213 DVDVCINTI-----PALVVTANVLAEMPSHTFVIDLASKPGGTDFRYAEKRGIKALLVPG 267

Query: 271 L 271
           L
Sbjct: 268 L 268

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 59/332 (17%), Positives = 109/332 (32%), Gaps = 100/332 (30%)

Query: 4   HEEHRD---HQSQHLPRVLVIKPPPPLTLFGDKFISRSF---QLLKAYESSLSLEQF--L 55
           H  H D    + Q+  + +       L++F D F+  +F    +    +S LS E+   +
Sbjct: 3   HHHHMDFETGEHQYQYKDI-------LSVFEDAFV-DNFDCKDVQDMPKSILSKEEIDHI 54

Query: 56  ISHAHSIEA------ILCS-GDSPVTL---DILR-----LLPKLRLVVTASAGVNHIHMP 100
           I    ++         L S  +  V     ++LR     L+  ++      + +  +++ 
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI- 113

Query: 101 ECRRRGIAVANAGSIFSDDAADAAVGLLIDVWR--KISSADRFLRQGLWSKIGDYPLGSK 158
           E R R   + N   +F+            +V R          LRQ L        L   
Sbjct: 114 EQRDR---LYNDNQVFAKY----------NVSRLQPYLK----LRQAL------LELRP- 149

Query: 159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYA-FYSNV--CELAANSDAL 215
              K V I G+   G      +     +V  + + +  + +  F+ N+  C    NS   
Sbjct: 150 --AKNVLIDGVLGSGKTW---VAL---DVCLSYKVQCKMDFKIFWLNLKNC----NSPET 197

Query: 216 IICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE 275
           ++              E++  L  + I  N    +    N  +R      I      + +
Sbjct: 198 VL--------------EMLQKLLYQ-IDPNWTSRSDHSSNIKLRI---HSIQAELRRLLK 239

Query: 276 NEPYVPKELLELDNV----VLQPHRAVFTSEC 303
           ++PY    LL L NV            F   C
Sbjct: 240 SKPY-ENCLLVLLNVQNAKAWN----AFNLSC 266

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 13/97 (13%)

Query: 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYA-----FYSNVCELAANSDALII 217
           ++G +GLG +G  +A  L   G  +   +                    ++   +D + I
Sbjct: 5   KLGFIGLGIMGSPMAINLARAGHQLHVTTIGPVADELLSLGAVNVETARQVTEFADIIFI 64

Query: 218 CCALTDQTRRMINREVMLALGKEGIIVNVGRGA-VID 253
               T Q       +V+   G+ G      +G  ++D
Sbjct: 65  MVPDTPQV-----EDVL--FGEHGCAKTSLQGKTIVD 94

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 15/100 (15%)

Query: 162 KRVGIVGLGNIGLQVAKRLQAFGCNV-LYNSRSKKPVPYA------FYSNVCELAANSDA 214
             VGIVGLG++G+  A+     G +    +   +              ++  E A   DA
Sbjct: 8   FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDA 67

Query: 215 LIICCALTDQTRRMINREVMLALGKEGIIVNVGRGA-VID 253
           L+I      Q      R+V+   G++G+   +  G+ V+ 
Sbjct: 68  LVILVVNAAQV-----RQVL--FGEDGVAHLMKPGSAVMV 100

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* Length = 253

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALT 222
            V I+G+GNIG ++ +             R  K +P     +  ++ ++    ++ CA  
Sbjct: 14  TVLIIGMGNIGKKLVELGNFEKIYAY--DRISKDIPGVVRLDEFQVPSDVS-TVVECASP 70

Query: 223 DQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR 263
           +  +       +L      II++    A     E     ++
Sbjct: 71  EAVKEYS--LQILKNPVNYIIISTSAFADEVFRERFFSELK 109

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 14/99 (14%)

Query: 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYA------FYSNVCELAANSDAL 215
            ++G +GLG +G  +A  L   G  V      +  V            N  ++AA SD +
Sbjct: 5   IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDII 64

Query: 216 IICCALTDQTRRMINREVMLALGKEGIIVNVGRGA-VID 253
                            VM   G  G++     G  ++D
Sbjct: 65  FTSLPNAGIV-----ETVM--NGPGGVLSACKAGTVIVD 96

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 14/99 (14%)

Query: 162 KRVGIVGLGNIGLQVAKRLQAFGCNV-LYNSRSKKPVPYA-----FYSNVCELAANSDAL 215
           K++G +GLG +G  +   L   G  V ++N  ++K   +            E+ +  D  
Sbjct: 31  KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDIT 90

Query: 216 IICCALTDQTRRMINREVMLALGKEGIIVNVGRGAV-ID 253
             C +          ++++  LG  G++  +  G   +D
Sbjct: 91  FACVSDPKAA-----KDLV--LGPSGVLQGIRPGKCYVD 122

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 14/99 (14%)

Query: 162 KRVGIVGLGNIGLQVAKRLQAFGCNV-LYNSRSKKPVPYA-----FYSNVCELAANSDAL 215
             VG +GLG +G  ++  L   G  V ++N    K             +  E+       
Sbjct: 22  MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 81

Query: 216 IICCALTDQTRRMINREVMLALGKEGIIVNVGRGA-VID 253
           I   +            V+    K G++  +  G   ID
Sbjct: 82  IAMLSDPCAA-----LSVV--FDKGGVLEQICEGKGYID 113

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 14/99 (14%)

Query: 162 KRVGIVGLGNIGLQVAKRLQAFGCNV-LYNSRSKKPVPYA-----FYSNVCELAANSDAL 215
           ++ G +GLG +G  +AK L   GC+V ++N   +K    A       +  CE+  +    
Sbjct: 2   QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVT 61

Query: 216 IICCALTDQTRRMINREVMLALGKEGIIVNVGRGA-VID 253
               A           EV    GK G++  +G G   +D
Sbjct: 62  FAMLADPAAA-----EEVC--FGKHGVLEGIGEGRGYVD 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	331
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	100.0
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.96
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.93
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.92
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.91
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.84
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.81
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.76
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.73
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.69
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.69
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.69
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.62
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.38
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.38
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.37
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.37
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.36
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.36
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.33
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.32
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.31
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.29
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.29
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.26
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.25
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.25
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.24
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.22
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.21
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.19
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.19
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.16
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.15
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.15
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.14
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.14
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.13
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.1
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.09
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.08
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.08
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.07
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.06
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.03
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.02
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.01
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.01
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.0
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	98.98
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	98.97
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	98.93
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	98.93
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	98.92
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.44
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.89
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.89
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.87
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.87
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.86
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	98.86
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.83
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.82
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.79
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.79
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.78
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.72
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.7
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.69
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.67
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.67
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.66
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.64
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.63
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.62
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.61
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.6
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.59
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.58
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.55
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.53
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.49
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.48
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.47
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.46
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.46
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	98.46
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.45
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.45
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.45
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.44
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.44
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.44
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.43
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.43
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.42
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.42
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.42
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.42
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.4
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.4
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.4
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.4
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.39
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.39
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.37
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.37
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.35
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.34
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.32
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.32
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.31
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.31
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.29
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.22
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	98.18
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.17
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.14
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.13
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.1
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.1
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.09
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	98.04
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.03
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.01
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.99
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.95
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.94
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.92
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.92
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.92
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.9
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.9
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	97.89
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.89
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.87
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.86
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.86
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.86
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.83
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.8
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.77
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.76
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.76
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.76
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.74
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.74
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.7
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.69
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.69
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.68
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.67
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.62
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.56
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.53
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.52
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.47
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.46
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.46
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.45
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.45
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.45
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.43
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.41
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.38
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.38
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.37
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.36
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.35
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.35
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.32
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.3
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.3
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.29
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.28
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.28
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.28
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.27
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	97.26
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.25
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	97.25
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.25
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.23
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	97.21
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.21
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.2
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.19
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	97.19
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.18
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.16
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.16
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	97.16
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.15
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	97.15
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.14
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	97.11
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.09
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	97.05
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	97.05
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	97.05
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	97.05
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	97.02
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	97.0
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	97.0
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.98
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	96.97
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.96
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.95
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.94
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.94
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	96.94
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	96.94
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	96.94
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	96.93
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.92
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.92
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.91
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.91
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	96.9
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	96.88
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.87
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	96.86
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	96.85
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	96.84
1ydw_A	362	AX110P-like protein; structural genomics, protein	96.82
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	96.82
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.79
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.78
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.77
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	96.77
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	96.77
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.76
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.76
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.74
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.74
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	96.73
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.72
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	96.72
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	96.71
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.71
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.68
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	96.67
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	96.66
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.63
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	96.62
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.62
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	96.59
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	96.59
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	96.59
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.58
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.57
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	96.57
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.57
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.57
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	96.55
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.54
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	96.53
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.53
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.53
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.51
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	96.5
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	96.5
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	96.49
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.46
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	96.42
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.41
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	96.4
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.4
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.38
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	96.37
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	96.37
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.34
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	96.32
4had_A	350	Probable oxidoreductase protein; structural genomi	96.32
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	96.27
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.26
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.25
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.23
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.22
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.22
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.22
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.21
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	96.19
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	96.19
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	96.17
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.17
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.16
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.14
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.13
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	96.13
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.13
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.12
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.12
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	96.06
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	96.05
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.04
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.04
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.03
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.02
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	96.01
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.01
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	96.0
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	95.99
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.98
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.98
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	95.97
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	95.97
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.97
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	95.95
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	95.94
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	95.92
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.9
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.9
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	95.88
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.88
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	95.87
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	95.87
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	95.86
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	95.85
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	95.85
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.8
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	95.79
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	95.78
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.78
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.77
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	95.77
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	95.76
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.75
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	95.75
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	95.75
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	95.75
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.73
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	95.73
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	95.72
4h3v_A	390	Oxidoreductase domain protein; structural genomics	95.72
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	95.71
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.71
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	95.7
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.7
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	95.7
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	95.69
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	95.67
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.64
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.64
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	95.63
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.63
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.63
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	95.63
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	95.63
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	95.62
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	95.62
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	95.62
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	95.61
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	95.6
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	95.59
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	95.58
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	95.58
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.57
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.57
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	95.57
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.52
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	95.52
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.51
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	95.51
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.5
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.49
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	95.46
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	95.45
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	95.41
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.39
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	95.38
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	95.38
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.37
3on5_A	362	BH1974 protein; structural genomics, joint center	95.36
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.36
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	95.34
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	95.32
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	95.29
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	95.29
1xq6_A	253	Unknown protein; structural genomics, protein stru	95.27
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	95.26
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	95.24
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	95.19
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	95.18
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.18
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	95.18
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.17
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	95.17
2csu_A	457	457AA long hypothetical protein; structural genomi	95.17
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	95.17
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.16
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.16
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	95.14
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	95.13
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.11
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.11
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	95.11
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	95.1
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.09
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	95.06
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.04
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	95.04
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	95.03
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	95.03
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	95.01
3gms_A	340	Putative NADPH:quinone reductase; structural genom	95.0
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	94.99
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	94.98
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	94.98
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	94.97
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	94.94
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.94
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	94.93
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.91
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	94.9
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	94.89
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	94.88
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	94.87
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	94.86
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	94.85
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	94.85
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	94.85
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	94.85
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	94.84
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	94.83
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.82
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	94.82
4dqx_A	277	Probable oxidoreductase protein; structural genomi	94.8
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	94.78
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	94.78
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.78
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	94.7
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	94.7
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	94.69
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	94.69
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	94.67
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	94.64
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	94.63
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	94.6
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	94.56
1spx_A	278	Short-chain reductase family member (5L265); paral	94.56
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	94.55
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.54
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	94.52
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	94.51
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	94.51
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	94.5
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	94.49
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	94.49
1lnq_A	336	MTHK channels, potassium channel related protein;	94.49
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	94.48
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	94.48
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	94.47
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.41
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	94.41
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	94.4
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	94.33
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	94.31
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	94.3
2yfk_A	418	Aspartate/ornithine carbamoyltransferase; transcar	94.28
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	94.27
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	94.26
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	94.22
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	94.21

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=1.4e-74  Score=552.16  Aligned_cols=317  Identities=26%  Similarity=0.457  Sum_probs=282.5

Q ss_pred             cccCCCCeEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcC-CCceEEE
Q 020073           10 HQSQHLPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLL-PKLRLVV   88 (331)
Q Consensus        10 m~~~~k~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~-p~Lk~I~   88 (331)
                      |-+++|||||++.+.  +++..+. |++.|++...........+.+.+.++++|++++++..++++++++++ |+||||+
T Consensus        23 ~~~~~~~kvlv~~~~--~~~~~~~-l~~~~~v~~~~~~~~~~~~~l~~~~~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~   99 (345)
T 4g2n_A           23 MSTHPIQKAFLCRRF--TPAIEAE-LRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIA   99 (345)
T ss_dssp             ----CCCEEEESSCC--CHHHHHH-HHHHSEEEECTTCCCCCHHHHHHHTTTCSEEEECTTSCBCHHHHHHTTTTCCEEE
T ss_pred             cccCCCCEEEEeCCC--CHHHHHH-HHccCCEEEecCCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHHhhcCCceEEE
Confidence            667789999999987  6778888 88889875432222112344556678999999987789999999997 7999999


Q ss_pred             EccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCC-CCCCCccCCCceEEEE
Q 020073           89 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIG-DYPLGSKLGGKRVGIV  167 (331)
Q Consensus        89 ~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~-~~~~~~~l~g~~vgIi  167 (331)
                      ++|+|+|+||+++|+++||.|+|+||+++++||||+++++|++.|++..+++.+|+|+|.... ....|.+|+|+|||||
T Consensus       100 ~~~~G~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGII  179 (345)
T 4g2n_A          100 TLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIF  179 (345)
T ss_dssp             ESSSCCTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEE
T ss_pred             EcCCcccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999997532 1235789999999999


Q ss_pred             ecChHHHHHHHHHhhCCCEEEEECCCCCC----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEE
Q 020073          168 GLGNIGLQVAKRLQAFGCNVLYNSRSKKP----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGII  243 (331)
Q Consensus       168 G~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~l  243 (331)
                      |+|.||+.+|+++++|||+|++|||++.+    .+.....++++++++||+|++|+|++++|+++|+++.|++||+|++|
T Consensus       180 GlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gail  259 (345)
T 4g2n_A          180 GMGRIGRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVV  259 (345)
T ss_dssp             SCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEE
T ss_pred             EeChhHHHHHHHHHHCCCEEEEECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEE
Confidence            99999999999999999999999998754    33344469999999999999999999999999999999999999999


Q ss_pred             EEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 020073          244 VNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQP  323 (331)
Q Consensus       244 In~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  323 (331)
                      ||+|||+++|++||+++|++|+|+||+||||++||..++|||++|||++|||+||+|.+++.++.+.+++||.+|++|++
T Consensus       260 IN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~l~g~~  339 (345)
T 4g2n_A          260 INISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLIQGIEALNQSDV  339 (345)
T ss_dssp             EECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             EECCCCchhCHHHHHHHHHhCCceEEEecCCCCCCCCCchHHhCCCEEEcCccCcCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999555699999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 020073          324 LLSPVT  329 (331)
Q Consensus       324 ~~~~v~  329 (331)
                      +.|.|+
T Consensus       340 ~~~~V~  345 (345)
T 4g2n_A          340 PDNLIS  345 (345)
T ss_dssp             CTTBCC
T ss_pred             CCCCcC
Confidence            999885

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.5e-74  Score=551.02  Aligned_cols=314  Identities=33%  Similarity=0.594  Sum_probs=255.1

Q ss_pred             ccCCCCeEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEc
Q 020073           11 QSQHLPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTA   90 (331)
Q Consensus        11 ~~~~k~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~   90 (331)
                      ..|+||+||++.+.  .++..+. |++.|++..++ ...+.++++.+. +++|++++++.+++++++++++|+||||+++
T Consensus        26 ~~~~~~~vl~~~~~--~~~~~~~-L~~~~~v~~~~-~~~~~~~~~~~~-~~~d~li~~~~~~i~~~~l~~~p~Lk~I~~~  100 (340)
T 4dgs_A           26 FRNVKPDLLLVEPM--MPFVMDE-LQRNYSVHRLY-QAADRPALEAAL-PSIRAVATGGGAGLSNEWMEKLPSLGIIAIN  100 (340)
T ss_dssp             -------CEECSCC--CHHHHHT-HHHHSCCEETT-CGGGHHHHHHHG-GGCCEEEEETTTCBCHHHHHHCSSCCEEEEE
T ss_pred             cCCCCCEEEEECCC--CHHHHHH-HhcCCcEEEeC-CCCCHHHHHHHh-CCcEEEEEcCCCCCCHHHHhhCCCCEEEEEC
Confidence            34578999999987  6788888 88899876532 222344555554 7999999988889999999999999999999


Q ss_pred             cCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecC
Q 020073           91 SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLG  170 (331)
Q Consensus        91 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G  170 (331)
                      |+|+|+||+++|+++||.|+|+||+++++||||+++++|+++|++..+++.+|+|.|.....++.+.+|+|+|+||||+|
T Consensus       101 g~G~d~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG  180 (340)
T 4dgs_A          101 GVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLG  180 (340)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCS
T ss_pred             CCCccccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCC
Confidence            99999999999999999999999999999999999999999999999999999999975323446789999999999999


Q ss_pred             hHHHHHHHHHhhCCCEEEEECCCCCC-CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 020073          171 NIGLQVAKRLQAFGCNVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       171 ~IG~~~A~~l~~~G~~V~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg  249 (331)
                      .||+++|+++++|||+|++|+|++.. .+.....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||
T Consensus       181 ~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG  260 (340)
T 4dgs_A          181 QIGRALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARG  260 (340)
T ss_dssp             HHHHHHHHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCC
Confidence            99999999999999999999998765 44445679999999999999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 020073          250 AVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPVT  329 (331)
Q Consensus       250 ~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  329 (331)
                      +++|++||+++|++|+|+||+||||++||++++|||++|||++|||+||+|.+++.++.+.+++||.+|++|+++.|.||
T Consensus       261 ~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~Vn  340 (340)
T 4dgs_A          261 NVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFAGEKAPNTVN  340 (340)
T ss_dssp             --------------CCSSEEEESCCSSSSSCCSHHHHSSSEEECSSCSSCCHHHHHHHHHHHHHHHHHHHTTSCCTTBC-
T ss_pred             cccCHHHHHHHHHcCCceEEEeCCcCCCCCCccchhhCCCEEEcCcCCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence            99999999999999999999999999999888899999999999999999999999999999999999999999999997

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=2.4e-72  Score=535.01  Aligned_cols=314  Identities=24%  Similarity=0.394  Sum_probs=282.1

Q ss_pred             CCCeEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCC
Q 020073           14 HLPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAG   93 (331)
Q Consensus        14 ~k~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G   93 (331)
                      ||||||++.+.  .++..+. |++.++++..........+.+.+.++++|++++++..++++++++++|+||||++.|+|
T Consensus         1 m~~kvlv~~~~--~~~~~~~-l~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~~~Lk~I~~~~~G   77 (330)
T 4e5n_A            1 MLPKLVITHRV--HEEILQL-LAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKG   77 (330)
T ss_dssp             CCCEEEECSCC--CHHHHHH-HTTTCEEECCCSSSCCCHHHHHHHHTTCSEEEECTTCCBCHHHHHHCTTCCEEEESSSC
T ss_pred             CCCEEEEecCC--CHHHHHH-HHhCCeEEEecCCCCCCHHHHHHHhCCCeEEEEeCCCCCCHHHHhhCCCCcEEEECCCc
Confidence            36899999977  6788888 99988765322211112344455668999999977789999999999999999999999


Q ss_pred             CCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHH
Q 020073           94 VNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIG  173 (331)
Q Consensus        94 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG  173 (331)
                      +|+||+++|+++||.|+|+||+++.+||||+++++|++.|++..+++.+++|+|........|.+|+|+||||||+|.||
T Consensus        78 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G~IG  157 (330)
T 4e5n_A           78 FDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIG  157 (330)
T ss_dssp             CTTBCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEECCSHHH
T ss_pred             ccccCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEeeCHHH
Confidence            99999999999999999999999999999999999999999999999999999974322335789999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcC
Q 020073          174 LQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       174 ~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      +.+|+++++|||+|++|++++..      .+. ...++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|
T Consensus       158 ~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~-~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~a  236 (330)
T 4e5n_A          158 LAMADRLQGWGATLQYHEAKALDTQTEQRLGL-RQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPC  236 (330)
T ss_dssp             HHHHHHTTTSCCEEEEECSSCCCHHHHHHHTE-EECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECS
T ss_pred             HHHHHHHHHCCCEEEEECCCCCcHhHHHhcCc-eeCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECC
Confidence            99999999999999999998743      122 24589999999999999999999999999999999999999999999


Q ss_pred             CCCccCHHHHHHHHHhCCceEEEeecCCCC-------CCCC-CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 020073          248 RGAVIDENEMVRCLVRGEIAGAGLDVFENE-------PYVP-KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALF  319 (331)
Q Consensus       248 rg~~vd~~al~~aL~~~~i~ga~lDV~~~E-------P~~~-~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~  319 (331)
                      ||+++|++||+++|++|+|+||+||||++|       |++. +|||++|||++|||+||+|.++..++.+.+++||.+|+
T Consensus       237 rg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~  316 (330)
T 4e5n_A          237 RGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQAL  316 (330)
T ss_dssp             CGGGBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999       9654 49999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCC
Q 020073          320 SNQPLLSPVTAE  331 (331)
Q Consensus       320 ~g~~~~~~v~~~  331 (331)
                      +|+++.|.||++
T Consensus       317 ~g~~~~~~vn~~  328 (330)
T 4e5n_A          317 AGERPINAVNRL  328 (330)
T ss_dssp             TTSCCTTBSSCC
T ss_pred             cCCCCCCccCCC
Confidence            999999999985

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=3.1e-72  Score=534.79  Aligned_cols=269  Identities=27%  Similarity=0.423  Sum_probs=248.6

Q ss_pred             CCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHH
Q 020073           60 HSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSAD  139 (331)
Q Consensus        60 ~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~  139 (331)
                      .++|+++++..+++++++|+++|+||+|+++|+|+||||+++|+++||.|+|+||+++.+||||+++++|++.|++..++
T Consensus        41 ~~ad~i~v~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~~  120 (334)
T 3kb6_A           41 KKAELISVFVYDKLTEELLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIE  120 (334)
T ss_dssp             HHCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             cCCCEEEEeCCCCCCHHHHhcCCCCcEEEECCcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhcccccc
Confidence            46899998888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC---CCccccCCHHhhhcCCCEEE
Q 020073          140 RFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP---VPYAFYSNVCELAANSDALI  216 (331)
Q Consensus       140 ~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---~~~~~~~~l~ell~~aDiV~  216 (331)
                      +.+++|.|.... ...+.+++|+|+||||+|+||+.+|+++++|||+|++||++...   .....+.++++++++||+|+
T Consensus       121 ~~~~~~~~~~~~-~~~~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDivs  199 (334)
T 3kb6_A          121 DRVKKLNFSQDS-EILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVIS  199 (334)
T ss_dssp             HHHHTTCCCCCG-GGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEE
T ss_pred             cccccccccccc-ccccceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccchhhhhcCceecCHHHHHhhCCEEE
Confidence            999999986542 23578999999999999999999999999999999999987654   12234579999999999999


Q ss_pred             EeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCC-C-------------
Q 020073          217 ICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP-K-------------  282 (331)
Q Consensus       217 l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~-~-------------  282 (331)
                      +|||+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++. +             
T Consensus       200 lh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~  279 (334)
T 3kb6_A          200 LHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLK  279 (334)
T ss_dssp             ECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHH
T ss_pred             EcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999632 1             


Q ss_pred             --ccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 020073          283 --ELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPVT  329 (331)
Q Consensus       283 --~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  329 (331)
                        |||.+|||++|||+||+|.+++.++.+.+++||.+|++|+++...+|
T Consensus       280 ~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~Ge~~~~~~n  328 (334)
T 3kb6_A          280 ILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKGN  328 (334)
T ss_dssp             HHHHHTSTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCGGGGGGG
T ss_pred             chhhccCCCEEECCchhhChHHHHHHHHHHHHHHHHHHHcCCCCcCCCC
Confidence              58999999999999999999999999999999999999997654433

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=1.3e-69  Score=527.48  Aligned_cols=310  Identities=25%  Similarity=0.323  Sum_probs=273.4

Q ss_pred             CCCeEEEECCCCCCchHHHHHHhcc-CcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccC
Q 020073           14 HLPRVLVIKPPPPLTLFGDKFISRS-FQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASA   92 (331)
Q Consensus        14 ~k~~vl~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~   92 (331)
                      .|+|||++++.  .+...+. |++. |+.+.+.....+ ++.+.+.++++|++++++.+++++++++++|+||+|+++|+
T Consensus        14 ~~~kIl~~~~i--~~~~~~~-l~~~g~~~v~~~~~~~~-~~~l~~~~~~~d~l~v~~~~~i~~~~l~~~p~Lk~I~~~~~   89 (416)
T 3k5p_A           14 DRINVLLLEGI--SQTAVEY-FKSSGYTNVTHLPKALD-KADLIKAISSAHIIGIRSRTQLTEEIFAAANRLIAVGCFSV   89 (416)
T ss_dssp             GGSCEEECSCC--CHHHHHH-HHHTTCCCEEECSSCCC-HHHHHHHHTTCSEEEECSSCCBCHHHHHHCTTCCEEEECSS
T ss_pred             CCcEEEEECCC--CHHHHHH-HHHCCCcEEEECCCCCC-HHHHHHHccCCEEEEEcCCCCCCHHHHHhCCCcEEEEECcc
Confidence            36789999977  6777777 7764 523333433333 34455666899999888888999999999999999999999


Q ss_pred             CCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChH
Q 020073           93 GVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNI  172 (331)
Q Consensus        93 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~I  172 (331)
                      |+|+||+++|+++||.|+|+|++++++|||++++++|+++|++..+++.+++|.|.+..  ..+.+++|+|+||||+|.|
T Consensus        90 G~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~--~~~~el~gktvGIIGlG~I  167 (416)
T 3k5p_A           90 GTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTA--IGSREVRGKTLGIVGYGNI  167 (416)
T ss_dssp             CCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC--TTCCCSTTCEEEEECCSHH
T ss_pred             ccCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccC--CCCccCCCCEEEEEeeCHH
Confidence            99999999999999999999999999999999999999999999999999999998642  2467999999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEECCCCCC--CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073          173 GLQVAKRLQAFGCNVLYNSRSKKP--VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       173 G~~~A~~l~~~G~~V~~~~~~~~~--~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                      |+.+|+++++|||+|++||+++..  .......++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+
T Consensus       168 G~~vA~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~  247 (416)
T 3k5p_A          168 GSQVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGS  247 (416)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTT
T ss_pred             HHHHHHHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCCh
Confidence            999999999999999999997654  223445789999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHhCCceEEEeecCCCCCCCC-----CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 020073          251 VIDENEMVRCLVRGEIAGAGLDVFENEPYVP-----KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLL  325 (331)
Q Consensus       251 ~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~-----~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~  325 (331)
                      ++|++||++||++|+|+||+||||++||+++     +|||++|||++|||+||+|.|+..++...+++|+.+|++|+.+.
T Consensus       248 vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~nl~~~l~~g~~~  327 (416)
T 3k5p_A          248 DVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERIGTEVTRKLVEYSDVGSTV  327 (416)
T ss_dssp             SBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHHHCCCT
T ss_pred             hhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            9999999999999999999999999999764     48999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 020073          326 SPVT  329 (331)
Q Consensus       326 ~~v~  329 (331)
                      |.||
T Consensus       328 ~~Vn  331 (416)
T 3k5p_A          328 GAVN  331 (416)
T ss_dssp             TBSS
T ss_pred             ceee
Confidence            9998

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=2.9e-70  Score=518.31  Aligned_cols=306  Identities=22%  Similarity=0.336  Sum_probs=267.4

Q ss_pred             cCCCCeEEEECCCCCCchHHHHHH-hccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEc
Q 020073           12 SQHLPRVLVIKPPPPLTLFGDKFI-SRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTA   90 (331)
Q Consensus        12 ~~~k~~vl~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~   90 (331)
                      |.+|.|||++.+.  .+.+.+. | ++.++-+.+.... +. +.+.+.+.++|+++++  .++++++++++|+||||++.
T Consensus         2 ~~~~mkili~~~~--~~~~~~~-L~~~~~p~~~~~~~~-~~-~~~~~~~~~ad~li~~--~~~~~~~l~~~~~Lk~I~~~   74 (324)
T 3hg7_A            2 SLSQRTLLLLSQD--NAHYERL-LKAAHLPHLRILRAD-NQ-SDAEKLIGEAHILMAE--PARAKPLLAKANKLSWFQST   74 (324)
T ss_dssp             --CCEEEEEESTT--HHHHHHH-HHHSCCTTEEEEECS-SH-HHHHHHGGGCSEEEEC--HHHHGGGGGGCTTCCEEEES
T ss_pred             CccccEEEEecCC--CHHHHHH-HhhccCCCeEEEeCC-Ch-hHHHHHhCCCEEEEEC--CCCCHHHHhhCCCceEEEEC
Confidence            4556789999987  5667777 8 6665422322222 12 2334556799999874  24667889999999999999


Q ss_pred             cCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecC
Q 020073           91 SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLG  170 (331)
Q Consensus        91 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G  170 (331)
                      |+|+|+||++++++ ||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|...    .+.+++|+|+||||+|
T Consensus        75 ~~G~d~id~~~~~~-gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~----~~~~l~g~tvGIIGlG  149 (324)
T 3hg7_A           75 YAGVDVLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSH----PYQGLKGRTLLILGTG  149 (324)
T ss_dssp             SSCCGGGSCTTSCC-SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC----CCCCSTTCEEEEECCS
T ss_pred             CCCCCccChHHHhC-CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCC----CCcccccceEEEEEEC
Confidence            99999999998864 999999999999999999999999999999999999999999753    4678999999999999


Q ss_pred             hHHHHHHHHHhhCCCEEEEECCCCCC-CC---ccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEc
Q 020073          171 NIGLQVAKRLQAFGCNVLYNSRSKKP-VP---YAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNV  246 (331)
Q Consensus       171 ~IG~~~A~~l~~~G~~V~~~~~~~~~-~~---~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~  246 (331)
                      .||+++|+++++|||+|++|++++.. ..   .....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+
T Consensus       150 ~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~  229 (324)
T 3hg7_A          150 SIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNV  229 (324)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEEC
T ss_pred             HHHHHHHHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEEC
Confidence            99999999999999999999998754 11   223468999999999999999999999999999999999999999999


Q ss_pred             CCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCC-ccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 020073          247 GRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPK-ELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLL  325 (331)
Q Consensus       247 srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~-~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~  325 (331)
                      |||+++|++||+++|++|+|+||+||||++||++.+ |||++|||++|||+||+|.+  .++.+.+++|+.+|++|+++.
T Consensus       230 aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~nl~~~~~G~~~~  307 (324)
T 3hg7_A          230 GRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFP--DDVAQIFVRNYIRFIDGQPLD  307 (324)
T ss_dssp             SCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCH--HHHHHHHHHHHHHHHTTCCCT
T ss_pred             CCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHH--HHHHHHHHHHHHHHHcCCCCc
Confidence            999999999999999999999999999999998764 99999999999999999986  579999999999999999999


Q ss_pred             CCCCCC
Q 020073          326 SPVTAE  331 (331)
Q Consensus       326 ~~v~~~  331 (331)
                      |.||++
T Consensus       308 ~~V~~~  313 (324)
T 3hg7_A          308 GKIDFD  313 (324)
T ss_dssp             TBCCCC
T ss_pred             ceEChh
Confidence            999985

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=3.9e-69  Score=525.08  Aligned_cols=308  Identities=23%  Similarity=0.313  Sum_probs=267.8

Q ss_pred             CCeEEEECCCCCCchHHHHHHhcc-C-cEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccC
Q 020073           15 LPRVLVIKPPPPLTLFGDKFISRS-F-QLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASA   92 (331)
Q Consensus        15 k~~vl~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~   92 (331)
                      |+||+++++.  .+...+. |++. + ++.. .....+. +.+.+.++++|++++++.+++++++++++|+||+|+++|+
T Consensus         4 ~~kil~~~~~--~~~~~~~-l~~~~~~~v~~-~~~~~~~-~~l~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~   78 (404)
T 1sc6_A            4 KIKFLLVEGV--HQKALES-LRAAGYTNIEF-HKGALDD-EQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAI   78 (404)
T ss_dssp             SCCEEECSCC--CHHHHHH-HHHTTCCCEEE-CSSCCCH-HHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSS
T ss_pred             ceEEEEeCCC--CHHHHHH-HHhCCCcEEEE-cCCCCCH-HHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCcEEEECCc
Confidence            4579998876  5666777 7654 5 5543 3323333 3445566899999888778999999999999999999999


Q ss_pred             CCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChH
Q 020073           93 GVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNI  172 (331)
Q Consensus        93 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~I  172 (331)
                      |+||||+++|+++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|.+.  ...+.+++|+|+||||+|.|
T Consensus        79 G~d~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~--~~~~~el~gktlGiIGlG~I  156 (404)
T 1sc6_A           79 GTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKL--AAGSFEARGKKLGIIGYGHI  156 (404)
T ss_dssp             CCTTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-------CCCSTTCEEEEECCSHH
T ss_pred             ccCccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCcccc--CCCccccCCCEEEEEeECHH
Confidence            9999999999999999999999999999999999999999999999999999999753  12467999999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEECCCCCC-CC-ccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073          173 GLQVAKRLQAFGCNVLYNSRSKKP-VP-YAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       173 G~~~A~~l~~~G~~V~~~~~~~~~-~~-~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                      |+.+|+++++|||+|++||++... .+ .....++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+
T Consensus       157 G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~  236 (404)
T 1sc6_A          157 GTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGT  236 (404)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSS
T ss_pred             HHHHHHHHHHCCCEEEEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCCh
Confidence            999999999999999999997654 22 3345689999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHhCCceEEEeecCCCCCCCC-----CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 020073          251 VIDENEMVRCLVRGEIAGAGLDVFENEPYVP-----KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLL  325 (331)
Q Consensus       251 ~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~-----~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~  325 (331)
                      ++|++||+++|++|+|+||+||||++||.+.     +|||++|||++|||+||+|.|+..++...+++|+.+|++|+++.
T Consensus       237 ~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T~ea~~~~~~~~~~nl~~~l~g~~~~  316 (404)
T 1sc6_A          237 VVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTL  316 (404)
T ss_dssp             SBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCSHHHHHHHHHHHHHHHHHHHHHCCCT
T ss_pred             HHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            9999999999999999999999999999753     48999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 020073          326 SPVT  329 (331)
Q Consensus       326 ~~v~  329 (331)
                      |.||
T Consensus       317 ~~vn  320 (404)
T 1sc6_A          317 SAVN  320 (404)
T ss_dssp             TBSS
T ss_pred             ceec
Confidence            9999

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=1.3e-69  Score=519.33  Aligned_cols=311  Identities=24%  Similarity=0.347  Sum_probs=267.9

Q ss_pred             CCeEEEECCCCCCchHHHHHHhcc-CcEEEeccCCccHHHHHHhhcCCeeEEEEeCC--CCCCHHHHhcCCCceEEEEcc
Q 020073           15 LPRVLVIKPPPPLTLFGDKFISRS-FQLLKAYESSLSLEQFLISHAHSIEAILCSGD--SPVTLDILRLLPKLRLVVTAS   91 (331)
Q Consensus        15 k~~vl~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~--~~i~~~~l~~~p~Lk~I~~~~   91 (331)
                      +|++|-....  ...+.+. |++. ++++....... ..+.+.+.++++|+++++..  .++++++++++|+||+|++.|
T Consensus        19 ~~~~lg~~~~--~l~~~~~-L~~~g~ev~~~~~~~~-~~~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~p~Lk~i~~~g   94 (351)
T 3jtm_A           19 NPNFLGCVEN--ALGIRDW-LESQGHQYIVTDDKEG-PDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAG   94 (351)
T ss_dssp             CTTCCSSTTT--GGGCHHH-HHHTTCEEEEESCCSS-TTSHHHHHTTTCSEEEECTTSCCCBCHHHHHHCSSCCEEEESS
T ss_pred             CCCEEEeccc--hHHHHHH-HHHCCCEEEEeCCCCC-CHHHHHHHhCCCEEEEEccCCCCCCCHHHHhhCCCCeEEEEeC
Confidence            3444444332  2234445 6654 66654333222 22334566789999998543  569999999999999999999


Q ss_pred             CCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecCh
Q 020073           92 AGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGN  171 (331)
Q Consensus        92 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~  171 (331)
                      +|+|+||+++|+++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|........+.+|+|++|||||+|.
T Consensus        95 ~G~d~id~~~a~~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~  174 (351)
T 3jtm_A           95 IGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGR  174 (351)
T ss_dssp             SCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSH
T ss_pred             eeecccCHHHHHhcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCH
Confidence            99999999999999999999999999999999999999999999999999999999743111236789999999999999


Q ss_pred             HHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEE
Q 020073          172 IGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVN  245 (331)
Q Consensus       172 IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn  245 (331)
                      ||+.+|+++++|||+|++|++++.+      .+.....++++++++||+|++|+|++++|+++|+++.|++||+|++|||
T Consensus       175 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN  254 (351)
T 3jtm_A          175 IGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVN  254 (351)
T ss_dssp             HHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEE
T ss_pred             HHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEE
Confidence            9999999999999999999998654      2344456899999999999999999999999999999999999999999


Q ss_pred             cCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCC-CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC-
Q 020073          246 VGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP-KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQP-  323 (331)
Q Consensus       246 ~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~-~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~-  323 (331)
                      +|||+++|++||+++|++|+|+||+||||++||++. +|||++|||++|||+||+|.++..++.+.+++|+.+|++|++ 
T Consensus       255 ~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~g~~~  334 (351)
T 3jtm_A          255 NARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDF  334 (351)
T ss_dssp             CSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             CcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999999875 499999999999999999999999999999999999999995 


Q ss_pred             -CCCCCC
Q 020073          324 -LLSPVT  329 (331)
Q Consensus       324 -~~~~v~  329 (331)
                       +.|.|+
T Consensus       335 ~~~~~i~  341 (351)
T 3jtm_A          335 PTENYIV  341 (351)
T ss_dssp             CGGGEEE
T ss_pred             CCceEEe
Confidence             666554

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=1.4e-69  Score=514.07  Aligned_cols=304  Identities=20%  Similarity=0.309  Sum_probs=265.8

Q ss_pred             CeEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHH-hcCCCceEEEEccCCC
Q 020073           16 PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDIL-RLLPKLRLVVTASAGV   94 (331)
Q Consensus        16 ~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l-~~~p~Lk~I~~~~~G~   94 (331)
                      .|||++.+.  .++..+. |++.+..+.+...+...    .+.+.++|+++++. .++ ++++ +++|+||||++.|+|+
T Consensus         2 ~kil~~~~~--~~~~~~~-L~~~~~~~~~~~~~~~~----~~~~~~ad~l~~~~-~~~-~~~l~~~~~~Lk~I~~~~~G~   72 (324)
T 3evt_A            2 SLVLMAQAT--KPEQLQQ-LQTTYPDWTFKDAAAVT----AADYDQIEVMYGNH-PLL-KTILARPTNQLKFVQVISAGV   72 (324)
T ss_dssp             CEEEECSCC--CHHHHHH-HHHHCTTCEEEETTSCC----TTTGGGEEEEESCC-THH-HHHHHSTTCCCCEEECSSSCC
T ss_pred             cEEEEecCC--CHHHHHH-HHhhCCCeEEecCCccC----hHHhCCcEEEEECC-cCh-HHHHHhhCCCceEEEECCccc
Confidence            479999887  6778878 88766411211111111    12346899888754 456 8999 7899999999999999


Q ss_pred             CCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHH-HHHHHcCCcccCCCCCCCccCCCceEEEEecChHH
Q 020073           95 NHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSA-DRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIG  173 (331)
Q Consensus        95 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~-~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG  173 (331)
                      |+||+++++++||.|+|+||+++.+||||+++++|++.|++..+ .+.+++|.|....   .+.+++|+||||||+|.||
T Consensus        73 d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~---~~~~l~gktvGIiGlG~IG  149 (324)
T 3evt_A           73 DYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPM---TTSTLTGQQLLIYGTGQIG  149 (324)
T ss_dssp             TTSCHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSS---CCCCSTTCEEEEECCSHHH
T ss_pred             cccCHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCC---CCccccCCeEEEECcCHHH
Confidence            99999999999999999999999999999999999999999999 9999999997542   4789999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEECCCCCCC-C---ccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 020073          174 LQVAKRLQAFGCNVLYNSRSKKPV-P---YAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       174 ~~~A~~l~~~G~~V~~~~~~~~~~-~---~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg  249 (331)
                      +.+|+++++|||+|++|++++... .   .....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||
T Consensus       150 ~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG  229 (324)
T 3evt_A          150 QSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRG  229 (324)
T ss_dssp             HHHHHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCG
T ss_pred             HHHHHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCC
Confidence            999999999999999999987651 1   123468999999999999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHhCCceEEEeecCCCCCCCC-CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcC-CCCCCC
Q 020073          250 AVIDENEMVRCLVRGEIAGAGLDVFENEPYVP-KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSN-QPLLSP  327 (331)
Q Consensus       250 ~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~-~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g-~~~~~~  327 (331)
                      +++|++||+++|++|+|+||+||||++||++. +|||++|||++|||+||+|.++..++.+.+++|+.+|++| +++.|.
T Consensus       230 ~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~l~~~~~~~n~  309 (324)
T 3evt_A          230 PAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFVKDGTLVRNQ  309 (324)
T ss_dssp             GGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCCCHHHHHHHHHHHHHHHHHHHSCCCSCB
T ss_pred             hhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChHHHHHHHHHHHHHHHHHHHhCCCCCCce
Confidence            99999999999999999999999999999875 4999999999999999999999999999999999999975 568999


Q ss_pred             CCCC
Q 020073          328 VTAE  331 (331)
Q Consensus       328 v~~~  331 (331)
                      ||++
T Consensus       310 V~~~  313 (324)
T 3evt_A          310 VDLN  313 (324)
T ss_dssp             CC--
T ss_pred             ECcc
Confidence            9974

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=1.3e-68  Score=512.88  Aligned_cols=311  Identities=25%  Similarity=0.393  Sum_probs=271.6

Q ss_pred             CeEEEECCCCCCch---HHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEE-eCCCCCCHHHHhcCCCceEEEEcc
Q 020073           16 PRVLVIKPPPPLTL---FGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILC-SGDSPVTLDILRLLPKLRLVVTAS   91 (331)
Q Consensus        16 ~~vl~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~-~~~~~i~~~~l~~~p~Lk~I~~~~   91 (331)
                      .||++++.......   .++. |++ +++.. +......++.+.+.++++|++++ +...++++++++++|+||+|+++|
T Consensus         3 mki~~~d~~~~~~~~~~~~~~-l~~-~~v~~-~~~~~~~~~~l~~~~~~ad~li~~~~~~~~~~~~l~~~~~Lk~I~~~g   79 (352)
T 3gg9_A            3 LKIAVLDDYQDAVRKLDCFSL-LQD-HEVKV-FNNTVKGVGQLAARVADVEALVLIRERTRVTRQLLDRLPKLKIISQTG   79 (352)
T ss_dssp             CEEEECCCTTCCGGGSGGGGG-GTT-SEEEE-CCSCCCSHHHHHHHTTTCSEEEECTTSSCBCHHHHTTCTTCCEEEESS
T ss_pred             eEEEEEcCccccchhhhhhhh-hcC-ceEEE-ecCCCCCHHHHHHHhcCCeEEEEeCCCCCCCHHHHhhCCCCeEEEEeC
Confidence            47888876532211   2334 543 77654 33322223445566789999998 456789999999999999999999


Q ss_pred             CCC----CCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCC--------CCCCCccC
Q 020073           92 AGV----NHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIG--------DYPLGSKL  159 (331)
Q Consensus        92 ~G~----d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~--------~~~~~~~l  159 (331)
                      +|+    |+||+++|+++||.|+|+||+ +.+||||+++++|++.|++..+++.+++|.|....        ....+.+|
T Consensus        80 ~G~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~l  158 (352)
T 3gg9_A           80 RVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVL  158 (352)
T ss_dssp             CCCCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBCCC
T ss_pred             cccCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCccC
Confidence            999    999999999999999999999 99999999999999999999999999999997532        11247899


Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +|+||||||+|.||+.+|+++++|||+|++|+++...     .+.....++++++++||+|++|+|++++|+++|+++.|
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l  238 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADL  238 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHH
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHH
Confidence            9999999999999999999999999999999987532     34444569999999999999999999999999999999


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCC-CccccCCceEEcCCCCCCcHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP-KELLELDNVVLQPHRAVFTSECFVDLCELAVG  313 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~-~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~  313 (331)
                      ++||+|++|||+|||+++|++||+++|++|+|+||+||||++||++. +|||++|||++|||+||+|.++..++.+.+++
T Consensus       239 ~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~  318 (352)
T 3gg9_A          239 TRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAFQ  318 (352)
T ss_dssp             TTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHH
T ss_pred             hhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEECCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999864 59999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCC
Q 020073          314 NLEALFSNQPLLSPVTAE  331 (331)
Q Consensus       314 nl~~~~~g~~~~~~v~~~  331 (331)
                      ||.+|++|+| .|.|||+
T Consensus       319 ni~~~~~G~p-~~~Vn~~  335 (352)
T 3gg9_A          319 NILDILQGNV-DSVANPT  335 (352)
T ss_dssp             HHHHHHTTCC-TTBSCGG
T ss_pred             HHHHHHcCCC-CcccCHH
Confidence            9999999976 5999985

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=8.1e-69  Score=515.40  Aligned_cols=295  Identities=19%  Similarity=0.328  Sum_probs=257.6

Q ss_pred             chHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEc-cCCCCCCChhHHhhCC
Q 020073           28 TLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTA-SAGVNHIHMPECRRRG  106 (331)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~-~~G~d~id~~~~~~~g  106 (331)
                      +...+. |++.|+++.. . ..+.++++.+.+.++|+++.  ..++++++++++|+||+|++. |+|+|+||+++|+++|
T Consensus        46 ~~~~~~-L~~~~~v~~~-~-~~~~~e~~~~~~~~~~~i~~--~~~i~~~~l~~~p~Lk~I~~~~~~G~d~iD~~~a~~~G  120 (365)
T 4hy3_A           46 DEARAA-LHSKYEIVEA-D-PENIAGLGDDILGRARYIIG--QPPLSAETLARMPALRSILNVESNLLNNMPYEVLFQRG  120 (365)
T ss_dssp             HHHHHH-HHHHSEEEEC-C-GGGGGGSCTTHHHHEEEEEE--CCCCCHHHHTTCTTCCEEECCSSSCCSCSCTTHHHHSC
T ss_pred             HHHHHH-HhCCcEEEEC-C-CCChHHHHHHhhCCeEEEEe--CCCCCHHHHhhCCCCeEEEEecccccCcccHHHHhcCC
Confidence            445667 8888987642 1 22222333333456787774  368999999999999999975 8999999999999999


Q ss_pred             cEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCc--ccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCC
Q 020073          107 IAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLW--SKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFG  184 (331)
Q Consensus       107 I~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w--~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G  184 (331)
                      |.|+|+||+++++||||+++++|++.|++..+++.+|+|+|  .... ...+.+++|+||||||+|.||+.+|+++++||
T Consensus       121 I~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~-~~~~~~l~gktvGIIGlG~IG~~vA~~l~~fG  199 (365)
T 4hy3_A          121 IHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEG-NASARLIAGSEIGIVGFGDLGKALRRVLSGFR  199 (365)
T ss_dssp             CEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSS-TTSCCCSSSSEEEEECCSHHHHHHHHHHTTSC
T ss_pred             eEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCccccccc-cccccccCCCEEEEecCCcccHHHHHhhhhCC
Confidence            99999999999999999999999999999999999999994  3321 23578999999999999999999999999999


Q ss_pred             CEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHH
Q 020073          185 CNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVR  259 (331)
Q Consensus       185 ~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~  259 (331)
                      |+|++||++...     .+. ...++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||++
T Consensus       200 ~~V~~~d~~~~~~~~~~~g~-~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~  278 (365)
T 4hy3_A          200 ARIRVFDPWLPRSMLEENGV-EPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMA  278 (365)
T ss_dssp             CEEEEECSSSCHHHHHHTTC-EECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHH
T ss_pred             CEEEEECCCCCHHHHhhcCe-eeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHH
Confidence            999999998643     232 34689999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCceEEEeecCCCCCCCC-CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 020073          260 CLVRGEIAGAGLDVFENEPYVP-KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPVTA  330 (331)
Q Consensus       260 aL~~~~i~ga~lDV~~~EP~~~-~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~~  330 (331)
                      ||++|+|+ |+||||++||++. +|||++|||++|||+||+|.+++.++...+++||.+|++|+++.+.||.
T Consensus       279 aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~G~~~~~~vn~  349 (365)
T 4hy3_A          279 AVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHRAGALDSAFKKMGDMVLEDMDLMDRGLPPMRCKRA  349 (365)
T ss_dssp             HHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSCSSCCHHHHHHHHHHHHHHHHHHHTTCCCCSSEEC
T ss_pred             HHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCccccCHHHHHHHHHHHHHHHHHHHHcCCCccccccc
Confidence            99999998 8999999999765 4999999999999999999999999999999999999999999999984

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=4.3e-69  Score=513.95  Aligned_cols=310  Identities=20%  Similarity=0.334  Sum_probs=265.5

Q ss_pred             eEEEECCCCCCchHHHHHHhc-cCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHH-HHhcCC--CceEEEEccC
Q 020073           17 RVLVIKPPPPLTLFGDKFISR-SFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLD-ILRLLP--KLRLVVTASA   92 (331)
Q Consensus        17 ~vl~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~-~l~~~p--~Lk~I~~~~~   92 (331)
                      ||+++...+....+.+.++++ .+++.. .....+  +.+.+.++++|++++++.++++++ +++++|  +||+|++.|+
T Consensus         3 ki~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~--~~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~~~   79 (343)
T 2yq5_A            3 KIAMYNVSPIEVPYIEDWAKKNDVEIKT-TDQALT--SATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRIV   79 (343)
T ss_dssp             EEEEESCCGGGHHHHHHHHHHHTCEEEE-ESSCCS--TTGGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEESSS
T ss_pred             eEEEEecCcccHHHHHHHHHhCCeEEEE-CCCCCC--HHHHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEECce
Confidence            788887442233455552322 345543 222222  223456689999999877899999 999986  6999999999


Q ss_pred             CCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHH-cCCcccCCCCCCCccCCCceEEEEecCh
Q 020073           93 GVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLR-QGLWSKIGDYPLGSKLGGKRVGIVGLGN  171 (331)
Q Consensus        93 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~-~g~w~~~~~~~~~~~l~g~~vgIiG~G~  171 (331)
                      |+|+||+++|+++||.|+|+||+++++||||+++++|++.|++..+++.+| +|.|.... ...+.+|+|+||||||+|.
T Consensus        80 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~-~~~~~~l~gktvgIiGlG~  158 (343)
T 2yq5_A           80 GFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPS-NLISNEIYNLTVGLIGVGH  158 (343)
T ss_dssp             CCTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCG-GGCBCCGGGSEEEEECCSH
T ss_pred             eecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCccccc-CCCccccCCCeEEEEecCH
Confidence            999999999999999999999999999999999999999999999999999 89765321 2357899999999999999


Q ss_pred             HHHHHHHHHhhCCCEEEEECCCCCC--CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 020073          172 IGLQVAKRLQAFGCNVLYNSRSKKP--VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       172 IG~~~A~~l~~~G~~V~~~~~~~~~--~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg  249 (331)
                      ||+.+|+++++|||+|++|+++..+  .....+.++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||
T Consensus       159 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg  238 (343)
T 2yq5_A          159 IGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARG  238 (343)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCG
T ss_pred             HHHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCC
Confidence            9999999999999999999998764  22223458999999999999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHhCCceEEEeecCCCCC--CCCC------------ccccCCceEEcCCCCCCcHHHHHHHHHHHHHHH
Q 020073          250 AVIDENEMVRCLVRGEIAGAGLDVFENEP--YVPK------------ELLELDNVVLQPHRAVFTSECFVDLCELAVGNL  315 (331)
Q Consensus       250 ~~vd~~al~~aL~~~~i~ga~lDV~~~EP--~~~~------------~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl  315 (331)
                      +++|++||+++|++|+|+||+||||++||  .+.+            |||++|||++|||+|++|.+++.++.+.+++|+
T Consensus       239 ~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~ni  318 (343)
T 2yq5_A          239 ELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICLTDQ  318 (343)
T ss_dssp             GGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEEECSSCTTCBHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEEECCccccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999  3332            799999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCCCC
Q 020073          316 EALFSNQPLLSPVTA  330 (331)
Q Consensus       316 ~~~~~g~~~~~~v~~  330 (331)
                      .+|++|+++.|.||+
T Consensus       319 ~~~l~g~~~~~~v~~  333 (343)
T 2yq5_A          319 LTIAKGGRPRSIVNL  333 (343)
T ss_dssp             HHHHTTCCCTTBC--
T ss_pred             HHHHcCCCCCceECC
Confidence            999999999999997

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=3.2e-67  Score=500.11  Aligned_cols=312  Identities=43%  Similarity=0.776  Sum_probs=281.7

Q ss_pred             CCCCeEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccC
Q 020073           13 QHLPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASA   92 (331)
Q Consensus        13 ~~k~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~   92 (331)
                      |+||+|+++.+.  .+...+. |++.+++..... ..+.++++.+.++++|++++++..++++++++++|+||||+++|+
T Consensus        21 m~~~~vl~~~~~--~~~~~~~-l~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~   96 (333)
T 3ba1_A           21 MEAIGVLMMCPM--STYLEQE-LDKRFKLFRYWT-QPAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSFSV   96 (333)
T ss_dssp             -CCCEEEECSCC--CHHHHHH-HHHHSEEEEGGG-CSSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHCTTCCEEEESSS
T ss_pred             CCCCEEEEeCCC--CHHHHHH-HHhcCCEEEecC-CCChHHHHHHHhCCCEEEEEcCCCCCCHHHHhhCCCCcEEEEcCc
Confidence            447899998865  5677777 888887654322 223455566667899999987777899999999999999999999


Q ss_pred             CCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChH
Q 020073           93 GVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNI  172 (331)
Q Consensus        93 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~I  172 (331)
                      |+|+||+++|+++||.|+|+||+++.+||||+++++|+++|++..+++.+|+|.|... ....+.+++|++|||||+|.|
T Consensus        97 G~d~id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~-~~~~~~~l~g~~vgIIG~G~i  175 (333)
T 3ba1_A           97 GLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFG-DFKLTTKFSGKRVGIIGLGRI  175 (333)
T ss_dssp             CCTTBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGC-CCCCCCCCTTCCEEEECCSHH
T ss_pred             cccccCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcc-ccccccccCCCEEEEECCCHH
Confidence            9999999999999999999999999999999999999999999999999999999642 233578999999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEECCCCCC-CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCc
Q 020073          173 GLQVAKRLQAFGCNVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAV  251 (331)
Q Consensus       173 G~~~A~~l~~~G~~V~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~  251 (331)
                      |+.+|++++++|++|++|+++... .+.....++++++++||+|++|+|.+++|+++++++.++.||+|++|||+|||.+
T Consensus       176 G~~vA~~l~~~G~~V~~~dr~~~~~~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~  255 (333)
T 3ba1_A          176 GLAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPH  255 (333)
T ss_dssp             HHHHHHHHHTTTCCEEEECSSCCTTCCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGG
T ss_pred             HHHHHHHHHHCCCEEEEECCCchhccCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCch
Confidence            999999999999999999998765 3444457899999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 020073          252 IDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPVT  329 (331)
Q Consensus       252 vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  329 (331)
                      +|+++|+++|++|+++||++|||++||.+.+|||++|||++|||+|++|.++..++.+.+++|+.+|++|+++.|.||
T Consensus       256 vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~Vn  333 (333)
T 3ba1_A          256 VDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPLLTPVV  333 (333)
T ss_dssp             BCHHHHHHHHHHTSSCEEEESCCTTTTCCCGGGGGCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCSSBCC
T ss_pred             hCHHHHHHHHHcCCCeEEEEecCCCCCCCcchhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            999999999999999999999999999877899999999999999999999999999999999999999999999987

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.7e-66  Score=495.22  Aligned_cols=303  Identities=27%  Similarity=0.411  Sum_probs=262.4

Q ss_pred             CeEEEECCCCCCchHHHHHHhcc-CcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCC
Q 020073           16 PRVLVIKPPPPLTLFGDKFISRS-FQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGV   94 (331)
Q Consensus        16 ~~vl~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~   94 (331)
                      ++|+++.+.  .+...+. |++. +++.. .. ..+.+ .+.+.+.++|++++++..++++++++++|+||||+++|+|+
T Consensus        27 ~~vli~~~~--~~~~~~~-l~~~~~~v~~-~~-~~~~~-~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~  100 (335)
T 2g76_A           27 RKVLISDSL--DPCCRKI-LQDGGLQVVE-KQ-NLSKE-ELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGV  100 (335)
T ss_dssp             CEEEECSCC--CHHHHHH-HHHHTCEEEE-CC-SCCHH-HHHHHGGGCSEEEECSSSCBCHHHHHHCSSCCEEEESSSSC
T ss_pred             eEEEEcCCC--CHHHHHH-HHhCCCEEEE-CC-CCCHH-HHHHHhcCceEEEEcCCCCCCHHHHhhCCCCcEEEECCCCc
Confidence            578887765  5666666 6654 55433 22 22233 34455679999998777789999999999999999999999


Q ss_pred             CCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHH
Q 020073           95 NHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGL  174 (331)
Q Consensus        95 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~  174 (331)
                      |+||+++++++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|...  ...+.+++|++|||||+|.||+
T Consensus       101 d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~--~~~~~~l~g~tvgIIGlG~IG~  178 (335)
T 2g76_A          101 DNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERK--KFMGTELNGKTLGILGLGRIGR  178 (335)
T ss_dssp             TTBCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTG--GGCBCCCTTCEEEEECCSHHHH
T ss_pred             chhChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCcc--CCCCcCCCcCEEEEEeECHHHH
Confidence            99999999999999999999999999999999999999999999999999999643  1246789999999999999999


Q ss_pred             HHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 020073          175 QVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       175 ~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg  249 (331)
                      .+|+++++|||+|++||++..+     .+.. ..++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||
T Consensus       179 ~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg  257 (335)
T 2g76_A          179 EVATRMQSFGMKTIGYDPIISPEVSASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARG  257 (335)
T ss_dssp             HHHHHHHTTTCEEEEECSSSCHHHHHHTTCE-ECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCT
T ss_pred             HHHHHHHHCCCEEEEECCCcchhhhhhcCce-eCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCc
Confidence            9999999999999999997653     2222 358999999999999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 020073          250 AVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSP  327 (331)
Q Consensus       250 ~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~  327 (331)
                      +++|+++|+++|++|+|+||+||||+.||.+++|||++|||++|||+|++|.++..++.+.+++|+.+|++|+++.|.
T Consensus       258 ~vvd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~L~~~~nvilTPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~n~  335 (335)
T 2g76_A          258 GIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGV  335 (335)
T ss_dssp             TSBCHHHHHHHHHHTSEEEEEESCCSSSSCSCCHHHHSTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHC--------
T ss_pred             cccCHHHHHHHHHhCCccEEEEeecCCCCCCCchHHhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            999999999999999999999999999996667999999999999999999999999999999999999999998763

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=1e-66  Score=493.01  Aligned_cols=298  Identities=22%  Similarity=0.307  Sum_probs=258.0

Q ss_pred             CeEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCC
Q 020073           16 PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVN   95 (331)
Q Consensus        16 ~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d   95 (331)
                      .||+++.+....+.+.+. |++.++-+++...+..       ...++|+++++.   .+++++++ |+||||++.|+|+|
T Consensus         4 mkil~~~~~~~~~~~~~~-l~~~~p~~~~~~~~~~-------~~~~ad~~i~~~---~~~~~l~~-~~Lk~I~~~~aG~d   71 (315)
T 3pp8_A            4 MEIIFYHPTFNAAWWVNA-LEKALPHARVREWKVG-------DNNPADYALVWQ---PPVEMLAG-RRLKAVFVLGAGVD   71 (315)
T ss_dssp             EEEEEECSSSCHHHHHHH-HHHHSTTEEEEECCTT-------CCSCCSEEEESS---CCHHHHTT-CCCSEEEESSSCCH
T ss_pred             eEEEEEcCCCchHHHHHH-HHHHCCCCEEEecCCC-------CccCcEEEEECC---CCHHHhCC-CCceEEEECCEecc
Confidence            468888765222446666 7777742222111111       125899999863   58999999 99999999999999


Q ss_pred             CC-C-hhH---HhhCCcEEEeCCCCC-hHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEec
Q 020073           96 HI-H-MPE---CRRRGIAVANAGSIF-SDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGL  169 (331)
Q Consensus        96 ~i-d-~~~---~~~~gI~v~n~~~~~-~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~  169 (331)
                      +| | +++   +.++||.|+|+++.. +.+||||+++++|++.|++..+++.+++|.|...    .+.+++|+||||||+
T Consensus        72 ~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~----~~~~l~g~tvGIiG~  147 (315)
T 3pp8_A           72 AILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPL----PEYTREEFSVGIMGA  147 (315)
T ss_dssp             HHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC----CCCCSTTCCEEEECC
T ss_pred             cccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCC----CCCCcCCCEEEEEee
Confidence            99 7 887   778999999998864 8999999999999999999999999999999753    467899999999999


Q ss_pred             ChHHHHHHHHHhhCCCEEEEECCCCCC-CCcc---ccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEE
Q 020073          170 GNIGLQVAKRLQAFGCNVLYNSRSKKP-VPYA---FYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVN  245 (331)
Q Consensus       170 G~IG~~~A~~l~~~G~~V~~~~~~~~~-~~~~---~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn  245 (331)
                      |.||+.+|+++++|||+|++|++++.. .+..   ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||
T Consensus       148 G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN  227 (315)
T 3pp8_A          148 GVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLN  227 (315)
T ss_dssp             SHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEE
T ss_pred             CHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEE
Confidence            999999999999999999999998765 2221   125899999999999999999999999999999999999999999


Q ss_pred             cCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCC-CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 020073          246 VGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP-KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPL  324 (331)
Q Consensus       246 ~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~-~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~  324 (331)
                      +|||+++|++||++||++|+|+||+||||++||++. +|||++|||++|||+||+|.+  .++.+.+++||.+|++|+++
T Consensus       228 ~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~ni~~~~~G~~~  305 (315)
T 3pp8_A          228 LARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRP--AEAIDYISRTITQLEKGEPV  305 (315)
T ss_dssp             CSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSCSSCCCH--HHHHHHHHHHHHHHHHTCCC
T ss_pred             CCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCCCcccHH--HHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999999875 499999999999999999985  58999999999999999999


Q ss_pred             CCCCCCC
Q 020073          325 LSPVTAE  331 (331)
Q Consensus       325 ~~~v~~~  331 (331)
                      .|.||++
T Consensus       306 ~~~V~~~  312 (315)
T 3pp8_A          306 TGQVDRA  312 (315)
T ss_dssp             CCBCCCC
T ss_pred             CceECcc
Confidence            9999985

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=1.2e-66  Score=496.20  Aligned_cols=310  Identities=20%  Similarity=0.313  Sum_probs=268.6

Q ss_pred             eEEEECCCCCCchHHHHHHhccCcE-EEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCC--ceEEEEccCC
Q 020073           17 RVLVIKPPPPLTLFGDKFISRSFQL-LKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPK--LRLVVTASAG   93 (331)
Q Consensus        17 ~vl~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~--Lk~I~~~~~G   93 (331)
                      ||+++...+..+...+. |.+.+++ +.+.....+. +.+.+.+.++|++++++..++++++++++|+  ||+|++.|+|
T Consensus         2 ki~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G   79 (331)
T 1xdw_A            2 KVLCYGVRDVELPIFEA-CNKEFGYDIKCVPDYLNT-KETAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTAG   79 (331)
T ss_dssp             EEEECSCCTTTHHHHHH-HGGGTCCEEEECSCCSCS-HHHHHTTTTCSEEEECTTCCBCHHHHHHHHHHTCCEEEESSSC
T ss_pred             EEEEEecCccCHHHHHH-HHHhcCeEEEECCCCCCH-HHHHHHhcCCeEEEEeCCCCCCHHHHhhCcccCceEEEEcccc
Confidence            57776543334556666 7665542 2223222221 3344566899999987777899999999998  9999999999


Q ss_pred             CCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHH
Q 020073           94 VNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIG  173 (331)
Q Consensus        94 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG  173 (331)
                      +|+||+++++++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|.... ...+.++.|++|||||+|.||
T Consensus        80 ~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~~l~g~~vgIiG~G~IG  158 (331)
T 1xdw_A           80 TDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDA-FMFSKEVRNCTVGVVGLGRIG  158 (331)
T ss_dssp             CTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCS-TTCCCCGGGSEEEEECCSHHH
T ss_pred             ccccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccc-CcCccCCCCCEEEEECcCHHH
Confidence            9999999999999999999999999999999999999999999999999999995311 124678999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEECCCCCCC--CccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCc
Q 020073          174 LQVAKRLQAFGCNVLYNSRSKKPV--PYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAV  251 (331)
Q Consensus       174 ~~~A~~l~~~G~~V~~~~~~~~~~--~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~  251 (331)
                      +.+|+++++|||+|++|+++..+.  ......++++++++||+|++|+|++++|+++|+++.|++||+|+++||+|||++
T Consensus       159 ~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~  238 (331)
T 1xdw_A          159 RVAAQIFHGMGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQL  238 (331)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGG
T ss_pred             HHHHHHHHHCCCEEEEECCCccHHHHhccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCccc
Confidence            999999999999999999987541  112345899999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHhCCceEEEeecCCCCCC--C--------CC----ccccC-CceEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 020073          252 IDENEMVRCLVRGEIAGAGLDVFENEPY--V--------PK----ELLEL-DNVVLQPHRAVFTSECFVDLCELAVGNLE  316 (331)
Q Consensus       252 vd~~al~~aL~~~~i~ga~lDV~~~EP~--~--------~~----~L~~~-~nvilTPH~a~~t~~~~~~~~~~~~~nl~  316 (331)
                      +|+++|+++|++|+|+||+||||++||+  +        ++    |||++ |||++|||+||+|.++..++.+.+++|+.
T Consensus       239 vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~  318 (331)
T 1xdw_A          239 VDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLK  318 (331)
T ss_dssp             BCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEEECCSCTTCSHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCEEEcCccccChHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999994  1        12    69999 99999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCC
Q 020073          317 ALFSNQPLLSPVT  329 (331)
Q Consensus       317 ~~~~g~~~~~~v~  329 (331)
                      +|++|+++.|.||
T Consensus       319 ~~~~g~~~~~~v~  331 (331)
T 1xdw_A          319 DLAETGDCPNKIK  331 (331)
T ss_dssp             HHHHHSCCTTBCC
T ss_pred             HHHcCCCCCCCCC
Confidence            9999999999987

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=5.8e-67  Score=498.75  Aligned_cols=310  Identities=22%  Similarity=0.344  Sum_probs=267.1

Q ss_pred             eEEEECCCCCCchHHHHHHhccC--cEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCC--ceEEEEccC
Q 020073           17 RVLVIKPPPPLTLFGDKFISRSF--QLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPK--LRLVVTASA   92 (331)
Q Consensus        17 ~vl~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~--Lk~I~~~~~   92 (331)
                      ||+++...+......+. +.+.+  ++.. +....+  +.+.+.+.++|++++++..++++++++++|+  ||||+++|+
T Consensus         2 kil~~~~~~~~~~~~~~-l~~~~~~~v~~-~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~   77 (333)
T 1dxy_A            2 KIIAYGARVDEIQYFKQ-WAKDTGNTLEY-HTEFLD--ENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNV   77 (333)
T ss_dssp             EEEECSCCTTTHHHHHH-HHHHHCCEEEE-CSSCCC--TTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSS
T ss_pred             EEEEEeccccCHHHHHH-HHHhCCeEEEE-cCCCCh--HHHHHHhcCCeEEEEcCCCCCCHHHHHhCcccCceEEEEcCc
Confidence            57776543334445556 64433  3332 322211  1234456799999987777899999999988  999999999


Q ss_pred             CCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChH
Q 020073           93 GVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNI  172 (331)
Q Consensus        93 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~I  172 (331)
                      |+|+||+++|+++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|.... ...+.+++|++|||||+|.|
T Consensus        78 G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~~l~g~~vgIiG~G~I  156 (333)
T 1dxy_A           78 GTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAG-TFIGKELGQQTVGVMGTGHI  156 (333)
T ss_dssp             CCTTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHT-CCCCCCGGGSEEEEECCSHH
T ss_pred             ccCccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCccccc-CCCccCCCCCEEEEECcCHH
Confidence            99999999999999999999999999999999999999999999999999999985311 12467899999999999999


Q ss_pred             HHHHHHHHhhCCCEEEEECCCCCCC--CccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073          173 GLQVAKRLQAFGCNVLYNSRSKKPV--PYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       173 G~~~A~~l~~~G~~V~~~~~~~~~~--~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                      |+.+|+++++|||+|++|+++....  ....+.++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+
T Consensus       157 G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~  236 (333)
T 1dxy_A          157 GQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPN  236 (333)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTT
T ss_pred             HHHHHHHHHHCCCEEEEECCCcchhhHhccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCc
Confidence            9999999999999999999987541  11234589999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHhCCceEEEeecCCCCCC-----------CC---CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 020073          251 VIDENEMVRCLVRGEIAGAGLDVFENEPY-----------VP---KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLE  316 (331)
Q Consensus       251 ~vd~~al~~aL~~~~i~ga~lDV~~~EP~-----------~~---~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~  316 (331)
                      ++|+++|+++|++|+|+||+||||++||.           +.   +|||++|||++|||+||+|.++..++.+.+++|+.
T Consensus       237 ~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~nl~  316 (333)
T 1dxy_A          237 LIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLV  316 (333)
T ss_dssp             SBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTCSHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEECCccccChHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999993           12   37999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCCCC
Q 020073          317 ALFSNQPLLSPVTAE  331 (331)
Q Consensus       317 ~~~~g~~~~~~v~~~  331 (331)
                      +|++|+++.|.||++
T Consensus       317 ~~~~g~~~~~~v~~~  331 (333)
T 1dxy_A          317 DFLTKGETSTEVTGP  331 (333)
T ss_dssp             HHHHHSCCTTEECC-
T ss_pred             HHHcCCCCCceeCCC
Confidence            999999999999874

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=8.3e-67  Score=497.75  Aligned_cols=308  Identities=19%  Similarity=0.297  Sum_probs=267.3

Q ss_pred             eEEEECCCCCCchHHHHHHhccC---cEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCC--ceEEEEcc
Q 020073           17 RVLVIKPPPPLTLFGDKFISRSF---QLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPK--LRLVVTAS   91 (331)
Q Consensus        17 ~vl~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~--Lk~I~~~~   91 (331)
                      ||+++...+..+...+. +++.+   ++.. +....+  +.+.+.+.++|++++++..++++++++++|+  ||||++.|
T Consensus         3 kil~~~~~~~~~~~~~~-l~~~~p~~~v~~-~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~   78 (333)
T 1j4a_A            3 KIFAYAIREDEKPFLKE-WEDAHKDVEVEY-TDKLLT--PETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRN   78 (333)
T ss_dssp             EEEECSCCGGGHHHHHH-HHHTCTTSEEEE-CSSCCC--TTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESS
T ss_pred             EEEEEecCccCHHHHHH-HHhhCCCcEEEE-CCCCCc--HHHHHHhcCCcEEEEcCCCCCCHHHHHhccccCCeEEEECC
Confidence            57777543223445556 66555   4432 322211  1234456799999987777899999999988  99999999


Q ss_pred             CCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecCh
Q 020073           92 AGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGN  171 (331)
Q Consensus        92 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~  171 (331)
                      +|+|+||+++|+++||.|+|+||+++++||||+++++|++.|++..+++.+++|.|...  ...+.+++|++|||||+|.
T Consensus        79 ~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~--~~~~~~l~g~~vgIiG~G~  156 (333)
T 1j4a_A           79 VGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWA--PTIGREVRDQVVGVVGTGH  156 (333)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCT--TCCBCCGGGSEEEEECCSH
T ss_pred             cccccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccC--CcccccCCCCEEEEEccCH
Confidence            99999999999999999999999999999999999999999999999999999999532  1246789999999999999


Q ss_pred             HHHHHHHHHhhCCCEEEEECCCCCCC---CccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 020073          172 IGLQVAKRLQAFGCNVLYNSRSKKPV---PYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       172 IG~~~A~~l~~~G~~V~~~~~~~~~~---~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      ||+.+|+++++|||+|++|+++..+.   ......++++++++||+|++|+|++++|+++|+++.|+.||+|+++||+||
T Consensus       157 IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~ar  236 (333)
T 1j4a_A          157 IGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSR  236 (333)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSC
T ss_pred             HHHHHHHHHHHCCCEEEEECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCC
Confidence            99999999999999999999987541   122234899999999999999999999999999999999999999999999


Q ss_pred             CCccCHHHHHHHHHhCCceEEEeecCCCCCC--CC--------C----ccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073          249 GAVIDENEMVRCLVRGEIAGAGLDVFENEPY--VP--------K----ELLELDNVVLQPHRAVFTSECFVDLCELAVGN  314 (331)
Q Consensus       249 g~~vd~~al~~aL~~~~i~ga~lDV~~~EP~--~~--------~----~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n  314 (331)
                      |+++|+++|+++|++|+|+||+||||++||.  +.        +    |||++|||++|||+||+|.++..++.+.+++|
T Consensus       237 g~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n  316 (333)
T 1j4a_A          237 GPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDN  316 (333)
T ss_dssp             GGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTTCBHHHHHHHHHHHHHH
T ss_pred             CcccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEECCccccCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999993  21        2    59999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCC
Q 020073          315 LEALFSNQPLLSPVTA  330 (331)
Q Consensus       315 l~~~~~g~~~~~~v~~  330 (331)
                      +.+|++|+++.|.||.
T Consensus       317 l~~~~~g~~~~~~v~~  332 (333)
T 1j4a_A          317 NLELVEGKEAETPVKV  332 (333)
T ss_dssp             HHHHHTTCCCSSBCCC
T ss_pred             HHHHHcCCCCCccccC
Confidence            9999999999999985

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=1.1e-66  Score=502.00  Aligned_cols=312  Identities=21%  Similarity=0.283  Sum_probs=266.6

Q ss_pred             CCeEEEECCCCCCchHHHHHHhcc-CcEEEeccCCccHHHHHHhhcCCeeEEEEeC--CCCCCHHHHhcCCCceEEEEcc
Q 020073           15 LPRVLVIKPPPPLTLFGDKFISRS-FQLLKAYESSLSLEQFLISHAHSIEAILCSG--DSPVTLDILRLLPKLRLVVTAS   91 (331)
Q Consensus        15 k~~vl~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~--~~~i~~~~l~~~p~Lk~I~~~~   91 (331)
                      ||+||+.+..  .+.+.+. |++. +++........+ .+.+.+.+.++|++++..  ..++++++++++|+||||++.|
T Consensus        17 ~~~vl~~d~~--~~~~~~~-l~~~~~~v~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~l~~~~~Lk~I~~~~   92 (364)
T 2j6i_A           17 EEKLYGCTEN--KLGIANW-LKDQGHELITTSDKEGG-NSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAG   92 (364)
T ss_dssp             CTTCTTBTTT--GGGCHHH-HHHTTCEEEEESCCSST-TSHHHHHGGGCSEEEECTTSCCCBCHHHHHHCTTCCEEEESS
T ss_pred             CceEEEecCc--cHHHHHH-HHhCCCEEEEcCCCCCC-HHHHHHHhhCCeEEEecCcCCCCCCHHHHhhCCCCeEEEECC
Confidence            5677776654  3444545 6553 555432222111 223445567899998754  2468999999999999999999


Q ss_pred             CCCCCCChhHHhhC--CcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEec
Q 020073           92 AGVNHIHMPECRRR--GIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGL  169 (331)
Q Consensus        92 ~G~d~id~~~~~~~--gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~  169 (331)
                      +|+|+||+++|+++  ||.|+|+||+++.+||||++++||++.|++..+++.+++|.|........+.+|+|++|||||+
T Consensus        93 ~G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~  172 (364)
T 2j6i_A           93 VGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGA  172 (364)
T ss_dssp             SCCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECC
T ss_pred             cccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEEEEECc
Confidence            99999999999999  9999999999999999999999999999999999999999996321112467899999999999


Q ss_pred             ChHHHHHHHHHhhCCCE-EEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcE
Q 020073          170 GNIGLQVAKRLQAFGCN-VLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGI  242 (331)
Q Consensus       170 G~IG~~~A~~l~~~G~~-V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~  242 (331)
                      |.||+.+|+++++|||+ |++|+++..+      .+.....++++++++||+|++|+|++++|+++|+++.|+.||+|++
T Consensus       173 G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~  252 (364)
T 2j6i_A          173 GRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAW  252 (364)
T ss_dssp             SHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEE
T ss_pred             CHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCE
Confidence            99999999999999997 9999988754      2333345899999999999999999999999999999999999999


Q ss_pred             EEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCC-CccccC--C---ceEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 020073          243 IVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP-KELLEL--D---NVVLQPHRAVFTSECFVDLCELAVGNLE  316 (331)
Q Consensus       243 lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~-~~L~~~--~---nvilTPH~a~~t~~~~~~~~~~~~~nl~  316 (331)
                      |||+|||+++|+++|+++|++|+|+||+||||++||++. +|||.+  |   ||++|||+||+|.++..++.+.+++|+.
T Consensus       253 lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~  332 (364)
T 2j6i_A          253 LVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTVNILE  332 (364)
T ss_dssp             EEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSCGGGSHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECCccCcCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999765 599999  9   9999999999999999999999999999


Q ss_pred             HHHcCC---CCCCCCCC
Q 020073          317 ALFSNQ---PLLSPVTA  330 (331)
Q Consensus       317 ~~~~g~---~~~~~v~~  330 (331)
                      +|++|+   ++.|.||.
T Consensus       333 ~~~~g~~~~~~~n~v~~  349 (364)
T 2j6i_A          333 SFFTGKFDYRPQDIILL  349 (364)
T ss_dssp             HHHTTCCCCCGGGEEEB
T ss_pred             HHHcCCCCCCCCceecC
Confidence            999999   45666553

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=2.3e-65  Score=483.50  Aligned_cols=307  Identities=30%  Similarity=0.517  Sum_probs=271.2

Q ss_pred             CeEEEECCCCCCchHHHHHHhcc-CcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCC
Q 020073           16 PRVLVIKPPPPLTLFGDKFISRS-FQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGV   94 (331)
Q Consensus        16 ~~vl~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~   94 (331)
                      |+||+..+.  .++..+. |++. +++........+ .+.+.+.+.++|+++++...++++++++++|+||||+++|+|+
T Consensus         1 ~~vl~~~~~--~~~~~~~-l~~~g~~v~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~i~~~~~G~   76 (311)
T 2cuk_A            1 MRVLVTRTL--PGKALDR-LRERGLEVEVHRGLFLP-KAELLKRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGV   76 (311)
T ss_dssp             CEEEESSCC--SSSTTHH-HHHTTCEEEECCSSCCC-HHHHHHHHTTCSEEECCTTSCBCHHHHHHSTTCCEEECSSSCC
T ss_pred             CEEEEeCCC--CHHHHHH-HHhcCCeEEEecCCCCC-HHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEECCcCc
Confidence            468887765  4556667 7776 776432222222 3344555689999998766789999999999999999999999


Q ss_pred             CCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCC-CCCCCccCCCceEEEEecChHH
Q 020073           95 NHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIG-DYPLGSKLGGKRVGIVGLGNIG  173 (331)
Q Consensus        95 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~-~~~~~~~l~g~~vgIiG~G~IG  173 (331)
                      |+||+++++++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|.... ....+.++.|++|||||+|.||
T Consensus        77 d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG  156 (311)
T 2cuk_A           77 DHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIG  156 (311)
T ss_dssp             TTBCHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHH
T ss_pred             cccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECHHH
Confidence            999999999999999999999999999999999999999999999999999996321 1124678999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccC
Q 020073          174 LQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVID  253 (331)
Q Consensus       174 ~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd  253 (331)
                      +.+|+++++||++|++|+++..+.. ....++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||+++|
T Consensus       157 ~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd  235 (311)
T 2cuk_A          157 QAVAKRALAFGMRVVYHARTPKPLP-YPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVD  235 (311)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCSSS-SCBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBC
T ss_pred             HHHHHHHHHCCCEEEEECCCCcccc-cccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccC
Confidence            9999999999999999999876532 235689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCceEEEeecCCCCCCCC-CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 020073          254 ENEMVRCLVRGEIAGAGLDVFENEPYVP-KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPV  328 (331)
Q Consensus       254 ~~al~~aL~~~~i~ga~lDV~~~EP~~~-~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v  328 (331)
                      +++|+++|+ |+|+||++|||+.||++. +|||++|||++|||+|++|.++..++.+.+++|+.+|++|+++.|.|
T Consensus       236 ~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v  310 (311)
T 2cuk_A          236 TEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPPNPV  310 (311)
T ss_dssp             HHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCSSBC
T ss_pred             HHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Confidence            999999999 999999999999999654 59999999999999999999999999999999999999999998876

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=8.6e-65  Score=481.40  Aligned_cols=307  Identities=25%  Similarity=0.398  Sum_probs=269.1

Q ss_pred             CeEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCC-ceEEEEccCCC
Q 020073           16 PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPK-LRLVVTASAGV   94 (331)
Q Consensus        16 ~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~-Lk~I~~~~~G~   94 (331)
                      ++|++..+.  .++..+. |++.+++...........+.+.+.+.++|++++++..++++++++++|+ ||||++.|+|+
T Consensus         2 ~~vl~~~~~--~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~Lk~I~~~~~G~   78 (320)
T 1gdh_A            2 KKILITWPL--PEAAMAR-ARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGF   78 (320)
T ss_dssp             CEEEESSCC--CHHHHHH-HHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSCC
T ss_pred             cEEEEcCCC--CHHHHHH-HHhcCCEEEecCCCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHHhCCccceEEEECCccc
Confidence            578887765  5666777 8877775432221111223445566899999988767899999999999 99999999999


Q ss_pred             CCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCC-CCCCCccCCCceEEEEecChHH
Q 020073           95 NHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIG-DYPLGSKLGGKRVGIVGLGNIG  173 (331)
Q Consensus        95 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~-~~~~~~~l~g~~vgIiG~G~IG  173 (331)
                      |+||+++|+++||.|+|+||+++++||||+++++|++.|++..+++.+++|.|.... ....+.++.|++|||||+|.||
T Consensus        79 d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG  158 (320)
T 1gdh_A           79 DHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIG  158 (320)
T ss_dssp             TTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHH
T ss_pred             ccccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcCHHH
Confidence            999999999999999999999999999999999999999999999999999996321 1124678999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEECC-CCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcC
Q 020073          174 LQVAKRLQAFGCNVLYNSR-SKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       174 ~~~A~~l~~~G~~V~~~~~-~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      +.+|+++++||++|++|++ +...     .+.....++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|
T Consensus       159 ~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~a  238 (320)
T 1gdh_A          159 QALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTA  238 (320)
T ss_dssp             HHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECS
T ss_pred             HHHHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECC
Confidence            9999999999999999999 7654     233333489999999999999999999999999999999999999999999


Q ss_pred             CCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 020073          248 RGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLS  326 (331)
Q Consensus       248 rg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~  326 (331)
                      ||+++|+++|.++|++|+|+||+||||+.||...+|||++|||++|||+|++|.++..++.+.+ +|+.+|++|+++.+
T Consensus       239 rg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~-~nl~~~~~g~~~~~  316 (320)
T 1gdh_A          239 RGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMAHQA-NDLIDALFGGADMS  316 (320)
T ss_dssp             CGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTCBHHHHHHHHHHH-HHHHHHHHTTSCCT
T ss_pred             CCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCCChhhhCCCEEECCcCCcCcHHHHHHHHHHH-HHHHHHHcCCCCcc
Confidence            9999999999999999999999999999999445699999999999999999999999999999 99999999998765

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=2e-65  Score=496.16  Aligned_cols=275  Identities=22%  Similarity=0.345  Sum_probs=251.7

Q ss_pred             HHhhcCCeeEEEEeC--CCCCCHHHHhcCCCceEEEEccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHH
Q 020073           55 LISHAHSIEAILCSG--DSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVW  132 (331)
Q Consensus        55 l~~~~~~~d~ii~~~--~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~  132 (331)
                      +.+.+.++|++++..  ..++++++++++|+||||++.|+|+|+||+++|+++||.|+|+|++++.+||||+++++|++.
T Consensus        83 l~~~l~~ad~li~~~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~~g~~~~~VAE~al~liL~~~  162 (393)
T 2nac_A           83 FERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLV  162 (393)
T ss_dssp             HHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCCCEEEEcCccCCCCCHHHHhhCCCCcEEEEcCccccccCHHHHhcCCEEEEeCCCcccHHHHHHHHHHHHHHH
Confidence            344567999998753  457999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHH
Q 020073          133 RKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVC  206 (331)
Q Consensus       133 r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~  206 (331)
                      |++..+++.+++|.|........+.+|+|+++||||+|.||+.+|+++++|||+|++|+++..+      .+.....+++
T Consensus       163 R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~  242 (393)
T 2nac_A          163 RNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATRE  242 (393)
T ss_dssp             TTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHH
T ss_pred             hccHHHHHHHHcCCCCccccccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHH
Confidence            9999999999999996421112367899999999999999999999999999999999998654      1333346899


Q ss_pred             hhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCC-Cccc
Q 020073          207 ELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP-KELL  285 (331)
Q Consensus       207 ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~-~~L~  285 (331)
                      +++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|+++|+++|++|+|+||+||||++||.+. +|||
T Consensus       243 ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~pL~  322 (393)
T 2nac_A          243 DMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWR  322 (393)
T ss_dssp             HHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGGG
T ss_pred             HHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCCChhH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999765 5999


Q ss_pred             cCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 020073          286 ELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPVT  329 (331)
Q Consensus       286 ~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  329 (331)
                      ++|||++|||+|++|.++..++.+.+++||++|++|+++.|.++
T Consensus       323 ~~~nvilTPHia~~T~e~~~~~~~~~~~nl~~~~~G~~~~~~~~  366 (393)
T 2nac_A          323 TMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYL  366 (393)
T ss_dssp             TSTTBCCCCSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGE
T ss_pred             cCCCEEECCCCCcCcHHHHHHHHHHHHHHHHHHHcCCCCcceeE
Confidence            99999999999999999999999999999999999999998764

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=9.3e-65  Score=478.57  Aligned_cols=298  Identities=34%  Similarity=0.507  Sum_probs=263.6

Q ss_pred             CCeEEEECCCCCCchHHHHHHhc-cCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCC
Q 020073           15 LPRVLVIKPPPPLTLFGDKFISR-SFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAG   93 (331)
Q Consensus        15 k~~vl~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G   93 (331)
                      |++|+++.+.  .+...+. |++ .+++..  ....+. +.+.+.+.++|++++++..++++++++++|+||||++.|+|
T Consensus         3 ~~~il~~~~~--~~~~~~~-l~~~~~~~~~--~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G   76 (307)
T 1wwk_A            3 RMKVLVAAPL--HEKAIQV-LKDAGLEVIY--EEYPDE-DRLVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARAGVG   76 (307)
T ss_dssp             -CEEEECSCC--CHHHHHH-HHHTTCEEEE--CSSCCH-HHHHHHSTTCSEEEESSCSCBCHHHHTTCTTCCEEEESSSC
T ss_pred             ceEEEEeCCC--CHHHHHH-HHhCCeEEEe--CCCCCH-HHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCeEEEECCcc
Confidence            4689988865  5666666 765 344432  222222 33455668999999876667999999999999999999999


Q ss_pred             CCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHH
Q 020073           94 VNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIG  173 (331)
Q Consensus        94 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG  173 (331)
                      +|+||+++++++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|...  ...+.++.|++|||||+|.||
T Consensus        77 ~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~--~~~~~~l~g~~vgIiG~G~IG  154 (307)
T 1wwk_A           77 LDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKK--EAMGIELEGKTIGIIGFGRIG  154 (307)
T ss_dssp             CTTBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTT--TCCBCCCTTCEEEEECCSHHH
T ss_pred             ccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcc--CcCCcccCCceEEEEccCHHH
Confidence            999999999999999999999999999999999999999999999999999999642  124678999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 020073          174 LQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       174 ~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      +.+|+++++||++|++|+++..+     .+.. ..++++++++||+|++|+|++++|+++++++.|+.||+|+++||+||
T Consensus       155 ~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~ar  233 (307)
T 1wwk_A          155 YQVAKIANALGMNILLYDPYPNEERAKEVNGK-FVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSR  233 (307)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCHHHHHHTTCE-ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSC
T ss_pred             HHHHHHHHHCCCEEEEECCCCChhhHhhcCcc-ccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCC
Confidence            99999999999999999998754     2332 35899999999999999999999999999999999999999999999


Q ss_pred             CCccCHHHHHHHHHhCCceEEEeecCCCCCCCC-CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 020073          249 GAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP-KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSN  321 (331)
Q Consensus       249 g~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~-~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g  321 (331)
                      |+++|+++|+++|++|+|+||+||||+.||.+. +|||++|||++|||+|++|.++..++.+.+++|+.+|++|
T Consensus       234 g~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g  307 (307)
T 1wwk_A          234 GPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKILKG  307 (307)
T ss_dssp             GGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999854 5999999999999999999999999999999999999986

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=6.4e-65  Score=486.57  Aligned_cols=317  Identities=23%  Similarity=0.376  Sum_probs=268.7

Q ss_pred             cccCCCCeEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEE
Q 020073           10 HQSQHLPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVT   89 (331)
Q Consensus        10 m~~~~k~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~   89 (331)
                      |..++||+|++++...... .++. ++..+++..+ +.. +.++++.+...++|+++++...++++++++++|+||||++
T Consensus        16 ~~~~~kp~i~~l~~~~~~~-~~~~-l~~~~~~~~~-~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Lk~I~~   91 (347)
T 1mx3_A           16 PRGSHMPLVALLDGRDCTV-EMPI-LKDVATVAFC-DAQ-STQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVR   91 (347)
T ss_dssp             -----CCEEEESSCSCCTT-THHH-HTTTCEEEEC-CCS-SGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEE
T ss_pred             CCCCCCCEEEEEcCCcchh-hHHH-hhccceEEec-CCC-CHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhCCCCCEEEE
Confidence            5667799999998643223 2455 7776766543 222 2223323323577888877777899999999999999999


Q ss_pred             ccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCC----CCCC-ccCCCceE
Q 020073           90 ASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGD----YPLG-SKLGGKRV  164 (331)
Q Consensus        90 ~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~----~~~~-~~l~g~~v  164 (331)
                      .|+|||+||+++|+++||.|+|+||+++++||||+++++|+++|++..+++.+++|.|.....    ...+ .+++|++|
T Consensus        92 ~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tv  171 (347)
T 1mx3_A           92 IGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETL  171 (347)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEE
T ss_pred             cccccCcccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEE
Confidence            999999999999999999999999999999999999999999999999999999999953210    0112 68999999


Q ss_pred             EEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCC
Q 020073          165 GIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGK  239 (331)
Q Consensus       165 gIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~  239 (331)
                      ||||+|.||+.+|+++++|||+|++|+++..+     .+.....++++++++||+|++|+|++++|+++|+++.|++||+
T Consensus       172 GIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~  251 (347)
T 1mx3_A          172 GIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQ  251 (347)
T ss_dssp             EEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCT
T ss_pred             EEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCC
Confidence            99999999999999999999999999987654     1233345899999999999999999999999999999999999


Q ss_pred             CcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCC--CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHH
Q 020073          240 EGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP--KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEA  317 (331)
Q Consensus       240 ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~--~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~  317 (331)
                      |++|||+|||+++|+++|+++|++|+|+||++|||+.||.+.  +|||.+|||++|||+|++|.++..++.+.+++|+.+
T Consensus       252 gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~~t~~~~~~~~~~~~~ni~~  331 (347)
T 1mx3_A          252 GAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRR  331 (347)
T ss_dssp             TEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999763  589999999999999999999999999999999999


Q ss_pred             HHcCCCCC---CCCCC
Q 020073          318 LFSNQPLL---SPVTA  330 (331)
Q Consensus       318 ~~~g~~~~---~~v~~  330 (331)
                      |++|+++.   |.||.
T Consensus       332 ~~~g~~~~~l~~~v~~  347 (347)
T 1mx3_A          332 AITGRIPDSLKNCVNK  347 (347)
T ss_dssp             HHHSCTTTTCSSBCC-
T ss_pred             HHcCCCCcccCCCCCC
Confidence            99998765   77763

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=3.2e-64  Score=476.08  Aligned_cols=298  Identities=24%  Similarity=0.383  Sum_probs=266.5

Q ss_pred             eEEEECCCCCCchHHHHHHhcc-CcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCC
Q 020073           17 RVLVIKPPPPLTLFGDKFISRS-FQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVN   95 (331)
Q Consensus        17 ~vl~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d   95 (331)
                      ||+++.+.  .+...+. |++. +++.  +....+. +.+.+.+.++|++++++..++++++++++|+||||++.|+|+|
T Consensus         7 kil~~~~~--~~~~~~~-l~~~~~~v~--~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   80 (313)
T 2ekl_A            7 KALITDPI--DEILIKT-LREKGIQVD--YMPEISK-EELLNIIGNYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLD   80 (313)
T ss_dssp             EEEECSCC--CHHHHHH-HHHTTCEEE--ECTTCCH-HHHHHHGGGCSEEEECSSSCBCHHHHHHCTTCCEEEECSSCCT
T ss_pred             EEEEECCC--CHHHHHH-HHhCCcEEE--eCCCCCH-HHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEEcCCCCC
Confidence            68888765  5666666 7664 4443  2222223 3345556799999987667899999999999999999999999


Q ss_pred             CCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHH
Q 020073           96 HIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQ  175 (331)
Q Consensus        96 ~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~  175 (331)
                      +||+++++++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|..    ..+.++.|++|||||+|.||+.
T Consensus        81 ~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~----~~~~~l~g~~vgIIG~G~IG~~  156 (313)
T 2ekl_A           81 NIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKK----IEGLELAGKTIGIVGFGRIGTK  156 (313)
T ss_dssp             TBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCC----CCCCCCTTCEEEEESCSHHHHH
T ss_pred             ccCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCC----CCCCCCCCCEEEEEeeCHHHHH
Confidence            999999999999999999999999999999999999999999999999999962    2467899999999999999999


Q ss_pred             HHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073          176 VAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       176 ~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                      +|++++++|++|++|++++.+     .+.. ..++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||+
T Consensus       157 ~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~  235 (313)
T 2ekl_A          157 VGIIANAMGMKVLAYDILDIREKAEKINAK-AVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAV  235 (313)
T ss_dssp             HHHHHHHTTCEEEEECSSCCHHHHHHTTCE-ECCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGG
T ss_pred             HHHHHHHCCCEEEEECCCcchhHHHhcCce-ecCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCc
Confidence            999999999999999998754     2333 3589999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHhCCceEEEeecCCCCCCCCC---ccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 020073          251 VIDENEMVRCLVRGEIAGAGLDVFENEPYVPK---ELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLL  325 (331)
Q Consensus       251 ~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~---~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~  325 (331)
                      ++|+++|+++|++|+|+||+||||+.||.+++   |||++|||++|||+|++|.++..++.+.+++|+.+|++|+++.
T Consensus       236 ~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~~~n~~~~~~g~~l~  313 (313)
T 2ekl_A          236 AVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLLNAMKELGMI  313 (313)
T ss_dssp             GBCHHHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHHHHSTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ccCHHHHHHHHHcCCCcEEEEecCCCCCCCCcccchHhhCCCEEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999998877   8999999999999999999999999999999999999999863

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=8.5e-64  Score=479.65  Aligned_cols=315  Identities=25%  Similarity=0.390  Sum_probs=273.1

Q ss_pred             CCCeEEEECC-CCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhc----CCeeEEEEe------CCCCCCHHHHhcCC
Q 020073           14 HLPRVLVIKP-PPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHA----HSIEAILCS------GDSPVTLDILRLLP   82 (331)
Q Consensus        14 ~k~~vl~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~----~~~d~ii~~------~~~~i~~~~l~~~p   82 (331)
                      +||+||++.+ ....+..++. |++.+++.. +.. .+.++++.+..    .++|+++..      ...++++++|+++|
T Consensus         2 ~~~~vl~~~~~~~~~~~~~~~-l~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~   78 (348)
T 2w2k_A            2 PRPRVLLLGDPARHLDDLWSD-FQQKFEVIP-ANL-TTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLP   78 (348)
T ss_dssp             CCCEEEECSSCCSSCHHHHHH-HHHHSEEEE-CCC-CCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTSC
T ss_pred             CCcEEEEECCccccChHHHHH-HHhcceEEe-cCC-CCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHhcc
Confidence            4789999987 4323455666 777787654 322 23344433321    278988864      23589999999998


Q ss_pred             -CceEEEEccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCC---cccCC--CCCCC
Q 020073           83 -KLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGL---WSKIG--DYPLG  156 (331)
Q Consensus        83 -~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~---w~~~~--~~~~~  156 (331)
                       +||||+++|+|+|+||+++|+++||.|+|+||+++.+||||+++++|+++|++..+++.+++|.   |....  ....+
T Consensus        79 ~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~  158 (348)
T 2w2k_A           79 SSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSA  158 (348)
T ss_dssp             TTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred             cCceEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccccccC
Confidence             6999999999999999999999999999999999999999999999999999999999999999   94210  01246


Q ss_pred             ccCCCceEEEEecChHHHHHHHHHh-hCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhc
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQ-AFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMI  229 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~-~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li  229 (331)
                      .+++|++|||||+|.||+.+|++++ +||++|++||++...      .+.....++++++++||+|++|+|.+++|++++
T Consensus       159 ~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li  238 (348)
T 2w2k_A          159 HNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLI  238 (348)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCB
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHh
Confidence            7899999999999999999999999 999999999998754      133333489999999999999999999999999


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHH
Q 020073          230 NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCE  309 (331)
Q Consensus       230 ~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~  309 (331)
                      +++.++.||+|++|||+|||+++|+++|.++|++|+|+||++|||++||...++||++|||++|||+|+.|.++..++.+
T Consensus       239 ~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~~~~  318 (348)
T 2w2k_A          239 DEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEFER  318 (348)
T ss_dssp             CHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTTSCCHHHHTSSSEEECCSCTTCSHHHHHHHHH
T ss_pred             hHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCCCCCchhhcCCCEEEcCcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999995445899999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCCCC
Q 020073          310 LAVGNLEALFSNQPLLSPVTAE  331 (331)
Q Consensus       310 ~~~~nl~~~~~g~~~~~~v~~~  331 (331)
                      .+++|+.+|++|+++.|.||++
T Consensus       319 ~~~~ni~~~~~g~~~~~~v~~~  340 (348)
T 2w2k_A          319 LTMTNIDRFLLQGKPLLTPAGK  340 (348)
T ss_dssp             HHHHHHHHHHHTCCCCSSBCSC
T ss_pred             HHHHHHHHHHcCCCCcceeccc
Confidence            9999999999999999999974

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=9.1e-64  Score=477.09  Aligned_cols=313  Identities=32%  Similarity=0.524  Sum_probs=275.2

Q ss_pred             CCeEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCC
Q 020073           15 LPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGV   94 (331)
Q Consensus        15 k~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~   94 (331)
                      |++|++..+.  .+...+. |++.+++...........+.+.+.+.++|+++++...++++++++++|+||||++.|+|+
T Consensus         2 ~~~il~~~~~--~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   78 (334)
T 2dbq_A            2 KPKVFITREI--PEVGIKM-LEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGY   78 (334)
T ss_dssp             CCEEEESSCC--CHHHHHH-HHTTSEEEECCCSSCCCHHHHHHHTTSCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCC
T ss_pred             CcEEEEecCC--CHHHHHH-HHhcCCEEEecCCCCCCHHHHHHHhcCcEEEEEcCCCCCCHHHHhhCCCceEEEECCccc
Confidence            4688887765  5666777 877777643222211123344556689999998776789999999999999999999999


Q ss_pred             CCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcc----cC-CCCCCCccCCCceEEEEec
Q 020073           95 NHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWS----KI-GDYPLGSKLGGKRVGIVGL  169 (331)
Q Consensus        95 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~----~~-~~~~~~~~l~g~~vgIiG~  169 (331)
                      |+||+++++++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|.    .. .....+.++.|++|||||+
T Consensus        79 d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG~  158 (334)
T 2dbq_A           79 DNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGL  158 (334)
T ss_dssp             TTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEECC
T ss_pred             ccccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEEEcc
Confidence            999999999999999999999999999999999999999999999999999996    21 1112367899999999999


Q ss_pred             ChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEE
Q 020073          170 GNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIV  244 (331)
Q Consensus       170 G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lI  244 (331)
                      |.||+.+|++++++|++|++|+++...     .+. ...++++++++||+|++|+|.+++|+++++++.++.||+|++||
T Consensus       159 G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~-~~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailI  237 (334)
T 2dbq_A          159 GRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNA-EFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILI  237 (334)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHCC-EECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEE
T ss_pred             CHHHHHHHHHHHhCCCEEEEECCCcchhhHhhcCc-ccCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEE
Confidence            999999999999999999999998754     122 23589999999999999999999999999999999999999999


Q ss_pred             EcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 020073          245 NVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPL  324 (331)
Q Consensus       245 n~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~  324 (331)
                      |+|||.++|+++|.++|++|+|+||++|||++||...+|||++|||++|||+|+.|.++..++.+.+++|+.+|++|+++
T Consensus       238 n~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP~~~~~L~~~~~vi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~  317 (334)
T 2dbq_A          238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRGEIP  317 (334)
T ss_dssp             ECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCCHHHHHCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             ECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCCCCCchhhcCCCEEECCccCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999993345999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q 020073          325 LSPVTAE  331 (331)
Q Consensus       325 ~~~v~~~  331 (331)
                      .|.|||+
T Consensus       318 ~~~v~~~  324 (334)
T 2dbq_A          318 PTLVNRE  324 (334)
T ss_dssp             TTBSCTT
T ss_pred             ccccCHH
Confidence            9999985

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=5e-64  Score=478.58  Aligned_cols=309  Identities=32%  Similarity=0.477  Sum_probs=274.8

Q ss_pred             CCeEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCC
Q 020073           15 LPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGV   94 (331)
Q Consensus        15 k~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~   94 (331)
                      ||+|+++.+.  .+...+. |++.+++.. +. ..+. +.+.+.+.++|++++++..++++++++++|+||||++.|+|+
T Consensus         2 ~~~il~~~~~--~~~~~~~-l~~~~~~~~-~~-~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   75 (333)
T 2d0i_A            2 RPKVGVLLKM--KREALEE-LKKYADVEI-IL-YPSG-EELKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGY   75 (333)
T ss_dssp             CSEEEECSCC--CHHHHHH-HHTTSEEEE-CC-SCCH-HHHHHHGGGCSEEEECTTSCBCHHHHTTCTTCCEEEESSSCC
T ss_pred             CcEEEEECCC--CHHHHHH-HHhcCCEEE-eC-CCCH-HHHHHHhcCCEEEEECCCCCCCHHHHhhCCCceEEEECCccc
Confidence            5789998865  5667777 887777543 33 2222 334455679999998777789999999999999999999999


Q ss_pred             CCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCC----ccCCCceEEEEecC
Q 020073           95 NHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLG----SKLGGKRVGIVGLG  170 (331)
Q Consensus        95 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~----~~l~g~~vgIiG~G  170 (331)
                      |+||+++++++||.|+|+||+++.+||||+++++|+++|++..+++.+|+|.|........|    .+++|++|||||+|
T Consensus        76 d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~l~g~~vgIIG~G  155 (333)
T 2d0i_A           76 DNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMG  155 (333)
T ss_dssp             TTBCHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEECCS
T ss_pred             ccccHHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcccccCCcccCCCCcCEEEEEccC
Confidence            99999999999999999999999999999999999999999999999999999531001134    68999999999999


Q ss_pred             hHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEE
Q 020073          171 NIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVN  245 (331)
Q Consensus       171 ~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn  245 (331)
                      .||+.+|++++++|++|++|+++...     .+.. ..++++++++||+|++|+|.+++|+++++++.++.||+| ++||
T Consensus       156 ~iG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~-~~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin  233 (333)
T 2d0i_A          156 AIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKAR-YMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVN  233 (333)
T ss_dssp             HHHHHHHHHHGGGTCEEEEECSSCCHHHHHHHTEE-ECCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCce-ecCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEE
Confidence            99999999999999999999998764     1222 348999999999999999999999999999999999999 9999


Q ss_pred             cCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCC-ceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 020073          246 VGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELD-NVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPL  324 (331)
Q Consensus       246 ~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~-nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~  324 (331)
                      +|||.++|+++|+++|++|+|+||++|||++||.+.+|||++| ||++|||+|+.|.++..++.+.+++|+.+|++|+++
T Consensus       234 ~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~~nviltPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~  313 (333)
T 2d0i_A          234 IGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVP  313 (333)
T ss_dssp             CSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCSCCGGGGCTTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCCCchHHcCCCCEEEcCccCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999997766999999 999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q 020073          325 LSPVTAE  331 (331)
Q Consensus       325 ~~~v~~~  331 (331)
                      .|.||++
T Consensus       314 ~~~v~~~  320 (333)
T 2d0i_A          314 EDLVNKE  320 (333)
T ss_dssp             TTBSCTT
T ss_pred             cCccCHH
Confidence            9999985

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=1.8e-63  Score=474.31  Aligned_cols=316  Identities=28%  Similarity=0.453  Sum_probs=274.8

Q ss_pred             cccCCCCeEEEECCCCCCchHHHHHHhcc--CcEEEeccCC-ccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcC-CCce
Q 020073           10 HQSQHLPRVLVIKPPPPLTLFGDKFISRS--FQLLKAYESS-LSLEQFLISHAHSIEAILCSGDSPVTLDILRLL-PKLR   85 (331)
Q Consensus        10 m~~~~k~~vl~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~-~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~-p~Lk   85 (331)
                      |..++|++|++..+.  .+...+. |++.  +++.. +... ....+.+.+.+.++|++++++..++++++++++ |+||
T Consensus         3 ~~~~~~~~il~~~~~--~~~~~~~-l~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~Lk   78 (330)
T 2gcg_A            3 MRPVRLMKVFVTRRI--PAEGRVA-LARAADCEVEQ-WDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLK   78 (330)
T ss_dssp             ----CCEEEEESSCC--CHHHHHH-HHHCTTEEEEE-CCSSSCCCHHHHHHHHTTCSEEEECTTSCBCHHHHHHHCTTCC
T ss_pred             CCCCCCCEEEEECCC--CHHHHHH-HHhcCCceEEE-ecCCCCCCHHHHHHHhcCCeEEEECCCCCCCHHHHHhcCCCce
Confidence            455566789888755  5666777 7776  55543 3221 112334455567999999877778999999999 9999


Q ss_pred             EEEEccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCC-CCCCCccCCCceE
Q 020073           86 LVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIG-DYPLGSKLGGKRV  164 (331)
Q Consensus        86 ~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~-~~~~~~~l~g~~v  164 (331)
                      ||++.|+|+|+||+++++++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|.... ....+.+++|++|
T Consensus        79 ~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~v  158 (330)
T 2gcg_A           79 VISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTV  158 (330)
T ss_dssp             EEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEE
T ss_pred             EEEECCcccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEE
Confidence            999999999999999999999999999999999999999999999999999999999999996421 1224679999999


Q ss_pred             EEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCC
Q 020073          165 GIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALG  238 (331)
Q Consensus       165 gIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk  238 (331)
                      ||||+|.||+.+|++++++|++|++|+++...      .+... .++++++++||+|++|+|.+++|+++++++.++.||
T Consensus       159 gIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk  237 (330)
T 2gcg_A          159 GIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEF-VSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMK  237 (330)
T ss_dssp             EEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSC
T ss_pred             EEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCcee-CCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCC
Confidence            99999999999999999999999999987653      12222 389999999999999999999999999999999999


Q ss_pred             CCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCC-CccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHH
Q 020073          239 KEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP-KELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEA  317 (331)
Q Consensus       239 ~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~-~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~  317 (331)
                      +|+++||+|||+++|+++|.++|++|+++||++|||++||++. +|||+++||++|||+|+.|.++..++.+.+++|+.+
T Consensus       238 ~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~t~~~~~~~~~~~~~n~~~  317 (330)
T 2gcg_A          238 ETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLA  317 (330)
T ss_dssp             TTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999665 499999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCCCC
Q 020073          318 LFSNQPLLSPVTA  330 (331)
Q Consensus       318 ~~~g~~~~~~v~~  330 (331)
                      |++|+++.|.||+
T Consensus       318 ~~~g~~~~~~v~~  330 (330)
T 2gcg_A          318 GLRGEPMPSELKL  330 (330)
T ss_dssp             HHHTCCCTTEECC
T ss_pred             HHcCCCCCCCCCC
Confidence            9999999999986

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=2.3e-63  Score=468.11  Aligned_cols=292  Identities=23%  Similarity=0.322  Sum_probs=259.1

Q ss_pred             eEEEECCCCCCchHHHHHHhcc-CcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCC
Q 020073           17 RVLVIKPPPPLTLFGDKFISRS-FQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVN   95 (331)
Q Consensus        17 ~vl~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d   95 (331)
                      |||+..+.  .+...+. |++. +++   .  .        +.+.++|+++++.   .+.++++++|+||||++.|+|+|
T Consensus         2 ~il~~~~~--~~~~~~~-l~~~~~~v---~--~--------~~~~~~d~~i~~~---~~~~~l~~~~~Lk~I~~~~~G~d   62 (303)
T 1qp8_A            2 ELYVNFEL--PPEAEEE-LRKYFKIV---R--G--------GDLGNVEAALVSR---ITAEELAKMPRLKFIQVVTAGLD   62 (303)
T ss_dssp             EEECCSCC--CHHHHHH-HHTTCEEE---C--S--------SCCTTBCCCCBSC---CCHHHHHHCTTCCCEEBSSSCCT
T ss_pred             EEEEccCC--CHHHHHH-HHhcCCcc---c--h--------hhhCCCEEEEECC---CCHHHHhhCCCCcEEEECCcCcc
Confidence            57776654  5666766 7664 222   1  1        2346889988753   46799999999999999999999


Q ss_pred             CCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHH
Q 020073           96 HIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQ  175 (331)
Q Consensus        96 ~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~  175 (331)
                      +||++++ ++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|...   ..+.++.|+++||||+|.||+.
T Consensus        63 ~id~~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~---~~~~~l~g~~vgIIG~G~IG~~  138 (303)
T 1qp8_A           63 HLPWESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRD---VEIPLIQGEKVAVLGLGEIGTR  138 (303)
T ss_dssp             TSCCTTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC---SCCCCCTTCEEEEESCSTHHHH
T ss_pred             cccHHHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCC---CCCCCCCCCEEEEEccCHHHHH
Confidence            9999985 79999999999999999999999999999999999999999999643   1235799999999999999999


Q ss_pred             HHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHH
Q 020073          176 VAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDEN  255 (331)
Q Consensus       176 ~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~  255 (331)
                      +|+++++|||+|++|+|+....+.....++++++++||+|++|+|++++|+++|+++.|+.||+|+++||+|||+++|++
T Consensus       139 ~A~~l~~~G~~V~~~dr~~~~~~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~  218 (303)
T 1qp8_A          139 VGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRD  218 (303)
T ss_dssp             HHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHH
T ss_pred             HHHHHHHCCCEEEEECCCccccCcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHH
Confidence            99999999999999998875222233468999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCceEEEeecC-CCCCCCC-CccccCCceEEcCCCCCC--cHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 020073          256 EMVRCLVRGEIAGAGLDVF-ENEPYVP-KELLELDNVVLQPHRAVF--TSECFVDLCELAVGNLEALFSNQPLLSPVTAE  331 (331)
Q Consensus       256 al~~aL~~~~i~ga~lDV~-~~EP~~~-~~L~~~~nvilTPH~a~~--t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~~~  331 (331)
                      +|+++|++|+|+||++||| ++||++. +|||++|||++|||+||+  |.+++.++.+.+++|+.+|++|+++.|.||+|
T Consensus       219 aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nviltPH~~~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~v~~~  298 (303)
T 1qp8_A          219 GVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGRPRNIAKRE  298 (303)
T ss_dssp             HHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSSSSSCHHHHHHHHHHHHHHHHHHHTTSCCSCBCCGG
T ss_pred             HHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEECCCcCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCceeCHH
Confidence            9999999999999999999 8899764 489999999999999998  99999999999999999999999999999975

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=4.3e-61  Score=462.82  Aligned_cols=277  Identities=22%  Similarity=0.290  Sum_probs=241.9

Q ss_pred             CeEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCC
Q 020073           16 PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVN   95 (331)
Q Consensus        16 ~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d   95 (331)
                      .||++....   +...+. +++..++......+.+.+     .+.++|++++++.+++++++++ .++||||++.|+|+|
T Consensus         4 mkIl~~~~~---p~~~~~-~~~~~~v~~~~~~~~~~~-----~l~~ad~li~~~~~~v~~~ll~-~~~Lk~I~~~~~G~D   73 (381)
T 3oet_A            4 MKILVDENM---PYAREL-FSRLGEVKAVPGRPIPVE-----ELNHADALMVRSVTKVNESLLS-GTPINFVGTATAGTD   73 (381)
T ss_dssp             CEEEEETTS---TTHHHH-HTTSSEEEEECC---CHH-----HHTTCSEEEECTTSCBSHHHHT-TSCCCEEEESSSCCT
T ss_pred             eEEEECCCC---cHHHHH-HhhCCcEEEeCCCCCCHH-----HHCCCEEEEECCCCCCCHHHHc-CCCCEEEEEcccccc
Confidence            478888765   334444 666666554322222222     2478999999877889999999 677999999999999


Q ss_pred             CCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHH
Q 020073           96 HIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQ  175 (331)
Q Consensus        96 ~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~  175 (331)
                      |||+++++++||.|+|+||+++.+||||+++++|++.|+.                    +.+++|+|+||||+|.||+.
T Consensus        74 ~iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~--------------------g~~l~gktvGIIGlG~IG~~  133 (381)
T 3oet_A           74 HVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD--------------------GFSLRDRTIGIVGVGNVGSR  133 (381)
T ss_dssp             TBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT--------------------TCCGGGCEEEEECCSHHHHH
T ss_pred             ccCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc--------------------CCccCCCEEEEEeECHHHHH
Confidence            9999999999999999999999999999999999998861                    34689999999999999999


Q ss_pred             HHHHHhhCCCEEEEECCCCCCC-CccccCCHHhhhcCCCEEEEeccCChh----hhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073          176 VAKRLQAFGCNVLYNSRSKKPV-PYAFYSNVCELAANSDALIICCALTDQ----TRRMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       176 ~A~~l~~~G~~V~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l~~P~t~~----t~~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                      +|+++++|||+|++||++.... ....+.++++++++||+|++|+|++++    |+++|+++.|++||+|++|||+|||+
T Consensus       134 vA~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~  213 (381)
T 3oet_A          134 LQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGP  213 (381)
T ss_dssp             HHHHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGG
T ss_pred             HHHHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCc
Confidence            9999999999999999854321 223457899999999999999999999    99999999999999999999999999


Q ss_pred             ccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 020073          251 VIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQP  323 (331)
Q Consensus       251 ~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~  323 (331)
                      +||++||+++|++|+++||+||||++||+++++||.++ +++|||+||+|.|+..++...+++|+.+|+.+.+
T Consensus       214 vvde~aL~~aL~~g~i~gA~LDV~e~EP~~~~~L~~~~-~i~TPHiag~t~e~~~~~~~~~~~~l~~~l~~~~  285 (381)
T 3oet_A          214 VVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAV-DIGTSHIAGYTLEGKARGTTQVFEAYSAFIGREQ  285 (381)
T ss_dssp             GBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHHHS-SEECSSCTTCCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             ccCHHHHHHHHHhCCCeEEEeeccccCCCCcchhhhCC-EEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCc
Confidence            99999999999999999999999999998777899875 8999999999999999999999999999998854

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=3.7e-60  Score=477.23  Aligned_cols=308  Identities=28%  Similarity=0.418  Sum_probs=275.3

Q ss_pred             CCCeEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCC
Q 020073           14 HLPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAG   93 (331)
Q Consensus        14 ~k~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G   93 (331)
                      +|++||+.++.  .+...+. |++.+++.. .. ..+. +.+.+.+.++|++++++.+++++++++++|+||||++.|+|
T Consensus         3 ~~~~vl~~~~~--~~~~~~~-l~~~~~v~~-~~-~~~~-~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~i~~~~~G   76 (529)
T 1ygy_A            3 SLPVVLIADKL--APSTVAA-LGDQVEVRW-VD-GPDR-DKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVG   76 (529)
T ss_dssp             CCCEEEECSSC--CGGGGTT-SCSSSEEEE-CC-TTSH-HHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSC
T ss_pred             CCcEEEEeCCC--CHHHHHH-HhcCceEEE-cC-CCCH-HHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCcEEEECCcC
Confidence            45689998876  5666666 777666543 22 2223 33455667999999987789999999999999999999999


Q ss_pred             CCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHH
Q 020073           94 VNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIG  173 (331)
Q Consensus        94 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG  173 (331)
                      +||||+++|+++||.|+|+|++++.+||||+++++|+++|+++.+++.+++|+|.+..  ..+.+++|+++||||+|.||
T Consensus        77 ~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~--~~~~~l~g~~vgIIG~G~IG  154 (529)
T 1ygy_A           77 LDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSS--FSGTEIFGKTVGVVGLGRIG  154 (529)
T ss_dssp             CTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGG--CCBCCCTTCEEEEECCSHHH
T ss_pred             cCccCHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccC--cCccccCCCEEEEEeeCHHH
Confidence            9999999999999999999999999999999999999999999999999999997531  24778999999999999999


Q ss_pred             HHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 020073          174 LQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       174 ~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      +++|++++++|++|++||++...     .+... .++++++++||+|++|+|.+++|+++++++.++.||+|+++||+||
T Consensus       155 ~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~-~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~ar  233 (529)
T 1ygy_A          155 QLVAQRIAAFGAYVVAYDPYVSPARAAQLGIEL-LSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAAR  233 (529)
T ss_dssp             HHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSC
T ss_pred             HHHHHHHHhCCCEEEEECCCCChhHHHhcCcEE-cCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCC
Confidence            99999999999999999987643     23332 3899999999999999999999999999999999999999999999


Q ss_pred             CCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 020073          249 GAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLLSPV  328 (331)
Q Consensus       249 g~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v  328 (331)
                      |+++|+++|+++|++|+|+||++|||+.||...+|||+++||++|||++++|.++..++...+++|+.+|+.|+++.|.|
T Consensus       234 g~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~~~~~v  313 (529)
T 1ygy_A          234 GGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAV  313 (529)
T ss_dssp             TTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBC
T ss_pred             CchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence            99999999999999999999999999999976679999999999999999999999999999999999999999999888


Q ss_pred             CC
Q 020073          329 TA  330 (331)
Q Consensus       329 ~~  330 (331)
                      |.
T Consensus       314 ~~  315 (529)
T 1ygy_A          314 NV  315 (529)
T ss_dssp             SC
T ss_pred             CC
Confidence            74

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=5.3e-61  Score=448.64  Aligned_cols=252  Identities=29%  Similarity=0.375  Sum_probs=229.0

Q ss_pred             hcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHH
Q 020073           58 HAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISS  137 (331)
Q Consensus        58 ~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~  137 (331)
                      .++++|++++. ...+      ++|+||||++.|+|+|+||++++++++|.++|. |.++.+||||+++++|++.|++..
T Consensus        31 ~~~~ad~li~~-~~~~------~~~~Lk~I~~~~~G~d~id~~~~~~~~~~~~~~-~~~~~~vAE~~~~~~L~~~R~~~~  102 (290)
T 3gvx_A           31 DYYDAEAQVIK-DRYV------LGKRTKMIQAISAGVDHIDVNGIPENVVLCSNA-GAYSISVAEHAFALLLAHAKNILE  102 (290)
T ss_dssp             SCCCCSEEEES-SCCC------CCSSCCEEEECSSCCTTSCGGGSCTTSEEECCH-HHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             chhhhhhhhhh-hhhh------hhhhhHHHHHHhcCCceeecCCCccceEEeecC-CcceeeHHHHHHHHHHHHHHhhhh
Confidence            34789999983 3333      789999999999999999999999877766664 889999999999999999999999


Q ss_pred             HHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-CCccccCCHHhhhcCCCEEE
Q 020073          138 ADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-VPYAFYSNVCELAANSDALI  216 (331)
Q Consensus       138 ~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~~~~~~~~l~ell~~aDiV~  216 (331)
                      +++.+++|.|....    ..+++|+||||||+|.||+.+|+++++|||+|++|+|+..+ .......++++++++||+|+
T Consensus       103 ~~~~~~~g~w~~~~----~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~  178 (290)
T 3gvx_A          103 NNELMKAGIFRQSP----TTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVL  178 (290)
T ss_dssp             HHHHHHTTCCCCCC----CCCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEE
T ss_pred             hhhHhhhcccccCC----ceeeecchheeeccCchhHHHHHHHHhhCcEEEEEeccccccccccccCChHHHhhccCeEE
Confidence            99999999997541    36899999999999999999999999999999999998765 33334568999999999999


Q ss_pred             EeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCC
Q 020073          217 ICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHR  296 (331)
Q Consensus       217 l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~  296 (331)
                      +|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+  +|||++|||++|||+
T Consensus       179 l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~--~pL~~~~nvilTPHi  256 (290)
T 3gvx_A          179 IAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE--ITETNLRNAILSPHV  256 (290)
T ss_dssp             ECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS--CCSCCCSSEEECCSC
T ss_pred             EEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcc--cchhhhhhhhcCccc
Confidence            999999999999999999999999999999999999999999999999999999999999997  899999999999999


Q ss_pred             C-CCcHHHHHHHHHHHHHHHHHHHcCCC
Q 020073          297 A-VFTSECFVDLCELAVGNLEALFSNQP  323 (331)
Q Consensus       297 a-~~t~~~~~~~~~~~~~nl~~~~~g~~  323 (331)
                      | ++|.++..++.+.+++||.+|++|+-
T Consensus       257 ag~~t~e~~~~~~~~~~~ni~~~~~~~~  284 (290)
T 3gvx_A          257 AGGMSGEIMDIAIQLAFENVRNFFEGEG  284 (290)
T ss_dssp             SSCBTTBCCHHHHHHHHHHHHHHTC---
T ss_pred             cCCccchHHHHHHHHHHHHHHhhhcCCC
Confidence            9 89999999999999999999999974

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.5e-58  Score=445.88  Aligned_cols=278  Identities=22%  Similarity=0.298  Sum_probs=241.4

Q ss_pred             eEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCCC
Q 020073           17 RVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNH   96 (331)
Q Consensus        17 ~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~   96 (331)
                      ||++....   +...+. +++..++......+..     .+.+.++|++++++.+++++++++ +|+||||++.|+|+|+
T Consensus         2 kil~~~~~---~~~~~~-~~~~~~v~~~~~~~~~-----~~~l~~ad~li~~~~~~~~~~~l~-~~~Lk~I~~~~~G~D~   71 (380)
T 2o4c_A            2 RILADENI---PVVDAF-FADQGSIRRLPGRAID-----RAALAEVDVLLVRSVTEVSRAALA-GSPVRFVGTCTIGTDH   71 (380)
T ss_dssp             EEEEETTC---TTHHHH-HGGGSEEEEECGGGCS-----TTTTTTCSEEEECTTSCBCHHHHT-TSCCCEEEECSSCSTT
T ss_pred             EEEEecCc---hHHHHH-HHhCCcEEEecCCcCC-----hHHHCCcEEEEEcCCCCCCHHHhc-CCCceEEEEcCcccch
Confidence            57777654   334444 6665554432211111     123478999998877889999999 8999999999999999


Q ss_pred             CChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHH
Q 020073           97 IHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQV  176 (331)
Q Consensus        97 id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~  176 (331)
                      ||+++++++||.|+|+||+++.+||||+++++|++.|+            |        +.+++|+||||||+|+||+.+
T Consensus        72 iD~~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~------------~--------~~~l~g~tvGIIGlG~IG~~v  131 (380)
T 2o4c_A           72 LDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEV------------R--------GADLAERTYGVVGAGQVGGRL  131 (380)
T ss_dssp             BCHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHH------------H--------TCCGGGCEEEEECCSHHHHHH
T ss_pred             hhHHHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhh------------h--------hcccCCCEEEEEeCCHHHHHH
Confidence            99999999999999999999999999999999999987            2        246899999999999999999


Q ss_pred             HHHHhhCCCEEEEECCCCCC-CCccccCCHHhhhcCCCEEEEeccCChh----hhhhccHHHHhcCCCCcEEEEcCCCCc
Q 020073          177 AKRLQAFGCNVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQ----TRRMINREVMLALGKEGIIVNVGRGAV  251 (331)
Q Consensus       177 A~~l~~~G~~V~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~~P~t~~----t~~li~~~~l~~mk~ga~lIn~srg~~  251 (331)
                      |+++++|||+|++|+++... .......++++++++||+|++|+|++++    |+++++++.|++||+|+++||+|||++
T Consensus       132 A~~l~~~G~~V~~~d~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~v  211 (380)
T 2o4c_A          132 VEVLRGLGWKVLVCDPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAV  211 (380)
T ss_dssp             HHHHHHTTCEEEEECHHHHHHSTTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGG
T ss_pred             HHHHHHCCCEEEEEcCChhhhccCcccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcc
Confidence            99999999999999976532 1112356899999999999999999999    999999999999999999999999999


Q ss_pred             cCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 020073          252 IDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLL  325 (331)
Q Consensus       252 vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~  325 (331)
                      +|+++|+++|++|+|+||+||||++||.++++|+. +||++|||+||+|.++..++.+.+++|+.+|++|++..
T Consensus       212 vd~~aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~~-~nvi~TPHiag~t~e~~~~~~~~~~~nl~~~l~g~~~~  284 (380)
T 2o4c_A          212 VDNQALRRLLEGGADLEVALDVWEGEPQADPELAA-RCLIATPHIAGYSLEGKLRGTAQIYQAYCAWRGIAERV  284 (380)
T ss_dssp             BCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHT-TCSEECSSCTTCCHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             cCHHHHHHHHHhCCCceEEeeeeccCCCCchhhcc-CCEEEccccCcCCHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence            99999999999999999999999999977778887 49999999999999999999999999999999998643

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=100.00  E-value=4e-38  Score=311.87  Aligned_cols=222  Identities=17%  Similarity=0.207  Sum_probs=192.1

Q ss_pred             CCceEEE-EccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCC
Q 020073           82 PKLRLVV-TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLG  160 (331)
Q Consensus        82 p~Lk~I~-~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~  160 (331)
                      |+++.|+ .+++|+|++  ++++++||.|+|++++++ +|||+       ++|++....+.++.| |.+.    .+.++.
T Consensus       212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~-------l~r~~~~~~~~l~~g-w~~~----~g~~L~  276 (494)
T 3d64_A          212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKS-------KFDNLYGCRESLVDG-IKRA----TDVMIA  276 (494)
T ss_dssp             TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHH-------HHHHHHHHHTTHHHH-HHHH----HCCCCT
T ss_pred             hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHH-------HHhhhHhhhhhhhhh-hhhc----cccccC
Confidence            8899998 889999988  789999999999999999 99994       457777666666666 7532    356799


Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      |++|||||+|.||+.+|+++++||++|+++++++.+      .+. ...++++++++||+|++|+    .|+++|+++.|
T Consensus       277 GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~-~~~~l~ell~~aDiVi~~~----~t~~lI~~~~l  351 (494)
T 3d64_A          277 GKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGY-RVVTMEYAADKADIFVTAT----GNYHVINHDHM  351 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTC-EECCHHHHTTTCSEEEECS----SSSCSBCHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCC-EeCCHHHHHhcCCEEEECC----CcccccCHHHH
Confidence            999999999999999999999999999999998643      122 2458999999999999997    68899999999


Q ss_pred             hcCCCCcEEEEcCCCCc-cCHHHHHHHHHhCCceEEEeecCCCCCCCC-CccccC--CceEEcCCCC-CCcHH-HHHHHH
Q 020073          235 LALGKEGIIVNVGRGAV-IDENEMVRCLVRGEIAGAGLDVFENEPYVP-KELLEL--DNVVLQPHRA-VFTSE-CFVDLC  308 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~-vd~~al~~aL~~~~i~ga~lDV~~~EP~~~-~~L~~~--~nvilTPH~a-~~t~~-~~~~~~  308 (331)
                      ++||+|++|||+|||++ ||+++| +||++|+|+ +++|||   |+++ +|||.+  |||++| |+| |.+.+ ...++.
T Consensus       352 ~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv~---plp~~~pL~~l~~~nvv~t-H~atg~~~~~~~~~~a  425 (494)
T 3d64_A          352 KAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDHI---IFPDGKRVILLAEGRLVNL-GCATGHPSFVMSNSFT  425 (494)
T ss_dssp             HHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEEE---ECTTSCEEEEEGGGSBHHH-HTSCCSCHHHHHHHHH
T ss_pred             hhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEEE---ECCCCCchhhcCCCCEEEE-eCcCCCCHHHHHHHHH
Confidence            99999999999999999 699999 999999997 556655   6544 589988  999999 999 66755 678889


Q ss_pred             HHHHHHHHHHHcCCCCCCCCC
Q 020073          309 ELAVGNLEALFSNQPLLSPVT  329 (331)
Q Consensus       309 ~~~~~nl~~~~~g~~~~~~v~  329 (331)
                      ..+++|+.+|++|+++.|.|+
T Consensus       426 ~~~~~ni~~~~~g~~~~n~V~  446 (494)
T 3d64_A          426 NQTLAQIELFTRGGEYANKVY  446 (494)
T ss_dssp             HHHHHHHHHHHHGGGSCSSEE
T ss_pred             HHHHHHHHHHHcCCCCCCcee
Confidence            999999999999999999885

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=100.00  E-value=9.4e-38  Score=308.19  Aligned_cols=225  Identities=16%  Similarity=0.211  Sum_probs=197.8

Q ss_pred             CCCceEEE-EccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccC
Q 020073           81 LPKLRLVV-TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKL  159 (331)
Q Consensus        81 ~p~Lk~I~-~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l  159 (331)
                      +|+++.|+ .+++|+|++  ++++++||.++|++++++ +|||       +++|++....+.++.| |.+.    .+.++
T Consensus       191 ~~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r~----~~~~l  255 (479)
T 1v8b_A          191 AKKIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMRA----TDFLI  255 (479)
T ss_dssp             HTTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHHH----HCCCC
T ss_pred             hcCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhhc----ccccc
Confidence            47899998 889999998  789999999999999999 9999       4568888888888888 8642    35679


Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHH
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      .|++|||||+|.||+.+|+++++||++|+++++++..      .++ ...++++++++||+|++|+    .|+++|+++.
T Consensus       256 ~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~-~~~~l~ell~~aDiVi~~~----~t~~lI~~~~  330 (479)
T 1v8b_A          256 SGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGF-NVVTLDEIVDKGDFFITCT----GNVDVIKLEH  330 (479)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTC-EECCHHHHTTTCSEEEECC----SSSSSBCHHH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCC-EecCHHHHHhcCCEEEECC----ChhhhcCHHH
Confidence            9999999999999999999999999999999998643      222 3468999999999999994    6889999999


Q ss_pred             HhcCCCCcEEEEcCCCCc-cCHHHHHH--HHHhCCceEEEeecCCCCCCCCCccccC--CceEEcCCCC-CCcHH-HHHH
Q 020073          234 MLALGKEGIIVNVGRGAV-IDENEMVR--CLVRGEIAGAGLDVFENEPYVPKELLEL--DNVVLQPHRA-VFTSE-CFVD  306 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~-vd~~al~~--aL~~~~i~ga~lDV~~~EP~~~~~L~~~--~nvilTPH~a-~~t~~-~~~~  306 (331)
                      |++||+|++|||+|||++ ||+++|.+  +|++|+|+ +++|||+.++  .+|||.+  |||++| |+| |.+.+ ...+
T Consensus       331 l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~plp~--~~~l~~l~~~nvv~t-H~atghp~e~~~~s  406 (479)
T 1v8b_A          331 LLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRITLPN--GNKIIVLARGRLLNL-GCATGHPAFVMSFS  406 (479)
T ss_dssp             HTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEEECTT--SCEEEEEGGGSBHHH-HSSCCSCHHHHHHH
T ss_pred             HhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEEECCC--CCeeeEecCCCEEEE-eccCCCCchhHHHH
Confidence            999999999999999999 99999999  99999998 9999984422  3588888  999999 999 66766 6778


Q ss_pred             HHHHHHHHHHHHHcCC--CCCCCCC
Q 020073          307 LCELAVGNLEALFSNQ--PLLSPVT  329 (331)
Q Consensus       307 ~~~~~~~nl~~~~~g~--~~~~~v~  329 (331)
                      +...+++|+..|++|+  ++.|.|+
T Consensus       407 ~a~~~~~ni~~~~~g~~~~l~n~V~  431 (479)
T 1v8b_A          407 FCNQTFAQLDLWQNKDTNKYENKVY  431 (479)
T ss_dssp             HHHHHHHHHHHHHTTTSSSCCSSEE
T ss_pred             HHHHHHHHHHHHHcCCCCcCCcceE
Confidence            8899999999999999  8988765

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.96  E-value=3e-29  Score=234.53  Aligned_cols=205  Identities=15%  Similarity=0.193  Sum_probs=159.7

Q ss_pred             CCeEEEECCCCCCchHHHHHHhc-cCcEEEeccCCc-------cHHHHHHhhcCCeeEEEEe----------------CC
Q 020073           15 LPRVLVIKPPPPLTLFGDKFISR-SFQLLKAYESSL-------SLEQFLISHAHSIEAILCS----------------GD   70 (331)
Q Consensus        15 k~~vl~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~-------~~~~~l~~~~~~~d~ii~~----------------~~   70 (331)
                      +.+|+++..........+. |.+ .+++.....++.       ...+.+.+.++++|+++++                ..
T Consensus         5 ~m~i~v~~~~~~~~~~~~~-L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~~~~   83 (293)
T 3d4o_A            5 GKHVVIIGGDARQLEIIRK-LSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSNES   83 (293)
T ss_dssp             TCEEEEECBCHHHHHHHHH-HHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSCSCC
T ss_pred             CcEEEEECCCHHHHHHHHH-HHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEeccccccCCceeecccccCC
Confidence            4468888754222334555 655 466543221111       0112234445789999875                23


Q ss_pred             CCCCHHHHhcCCCceEEEEccCCCCCCCh-hHHhhCCcEEEeCC------CCChHHHHHHHHHHHHHHHhchHHHHHHHH
Q 020073           71 SPVTLDILRLLPKLRLVVTASAGVNHIHM-PECRRRGIAVANAG------SIFSDDAADAAVGLLIDVWRKISSADRFLR  143 (331)
Q Consensus        71 ~~i~~~~l~~~p~Lk~I~~~~~G~d~id~-~~~~~~gI~v~n~~------~~~~~~vAE~al~l~L~~~r~~~~~~~~~~  143 (331)
                      .++++++++++|+||+|+   +|+|++|+ ++++++||.|+|+|      ++++.+|||++++++|..            
T Consensus        84 ~~~~~~~l~~~~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~------------  148 (293)
T 3d4o_A           84 IVLTEEMIEKTPNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH------------  148 (293)
T ss_dssp             CBCCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred             ccchHHHHHhCCCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHh------------
Confidence            468999999999999997   89999998 89999999999998      789999999999998862            


Q ss_pred             cCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccc--cCCHHhhhcCCCEE
Q 020073          144 QGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAF--YSNVCELAANSDAL  215 (331)
Q Consensus       144 ~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~--~~~l~ell~~aDiV  215 (331)
                                 .+.++.|+++||||+|.||+.+|++++++|++|++++|+..+      .+...  ..+++++++++|+|
T Consensus       149 -----------~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvV  217 (293)
T 3d4o_A          149 -----------TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVC  217 (293)
T ss_dssp             -----------CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEE
T ss_pred             -----------cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEE
Confidence                       134689999999999999999999999999999999998643      12221  25788999999999


Q ss_pred             EEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCc
Q 020073          216 IICCALTDQTRRMINREVMLALGKEGIIVNVGRGAV  251 (331)
Q Consensus       216 ~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~  251 (331)
                      ++|+|.     ++++++.++.||+|+++||++||..
T Consensus       218 i~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~  248 (293)
T 3d4o_A          218 INTIPA-----LVVTANVLAEMPSHTFVIDLASKPG  248 (293)
T ss_dssp             EECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred             EECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence            999996     6899999999999999999999764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.93  E-value=3e-26  Score=214.73  Aligned_cols=210  Identities=15%  Similarity=0.181  Sum_probs=153.8

Q ss_pred             CeEEEECCCCCCchHHHHHHhc-cCcEEEeccCCcc-------HHHHHHhhcCCeeEEEEe----C----------CCC-
Q 020073           16 PRVLVIKPPPPLTLFGDKFISR-SFQLLKAYESSLS-------LEQFLISHAHSIEAILCS----G----------DSP-   72 (331)
Q Consensus        16 ~~vl~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~-------~~~~l~~~~~~~d~ii~~----~----------~~~-   72 (331)
                      .+|+++..........+. |.+ .+++.....++..       ..+.+.+.++++|+++++    .          ..+ 
T Consensus         8 mki~v~~~~~~~~~~~~~-L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~~~~   86 (300)
T 2rir_A            8 LKIAVIGGDARQLEIIRK-LTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSNEEV   86 (300)
T ss_dssp             CEEEEESBCHHHHHHHHH-HHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCSSCE
T ss_pred             CEEEEECCCHHHHHHHHH-HHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCcccccccccCCc
Confidence            468888754222334555 655 4555432111110       111123445689999872    1          345 


Q ss_pred             -CCHHHHhcCCCceEEEEccCCCCCCC-hhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccC
Q 020073           73 -VTLDILRLLPKLRLVVTASAGVNHIH-MPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKI  150 (331)
Q Consensus        73 -i~~~~l~~~p~Lk~I~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~  150 (331)
                       +++++++.+|++|+|+   +|+|++| +++++++||.|+|+|+++  ++         ++.|+++..     +|.|...
T Consensus        87 ~~~~~~l~~~~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~v---------~~~r~~~~~-----~g~~~~~  147 (300)
T 2rir_A           87 VLKQDHLDRTPAHCVIF---SGISNAYLENIAAQAKRKLVKLFERD--DI---------AIYNSIPTV-----EGTIMLA  147 (300)
T ss_dssp             ECCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--HH---------HHHHHHHHH-----HHHHHHH
T ss_pred             cchHHHHhhcCCCCEEE---EecCCHHHHHHHHHCCCEEEeecCCC--ce---------EEEcCccHH-----HHHHHHH
Confidence             8899999999999998   8999999 999999999999999974  33         335666544     3446321


Q ss_pred             CCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc--ccCCHHhhhcCCCEEEEeccCC
Q 020073          151 GDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA--FYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       151 ~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~--~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      . ...+.++.|+++||||+|.||+.+|++++++|++|++++|+..+      .+..  ...++++++++||+|++|+|. 
T Consensus       148 ~-~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-  225 (300)
T 2rir_A          148 I-QHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS-  225 (300)
T ss_dssp             H-HTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-
T ss_pred             H-HhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-
Confidence            0 11356899999999999999999999999999999999998643      1222  135789999999999999997 


Q ss_pred             hhhhhhccHHHHhcCCCCcEEEEcCCCCc
Q 020073          223 DQTRRMINREVMLALGKEGIIVNVGRGAV  251 (331)
Q Consensus       223 ~~t~~li~~~~l~~mk~ga~lIn~srg~~  251 (331)
                          ++++++.++.||+|+++||++||..
T Consensus       226 ----~~i~~~~~~~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          226 ----MILNQTVLSSMTPKTLILDLASRPG  250 (300)
T ss_dssp             ----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred             ----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence                6899999999999999999999864

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.92  E-value=6.1e-27  Score=232.42  Aligned_cols=223  Identities=17%  Similarity=0.207  Sum_probs=178.7

Q ss_pred             CCceE-EEEccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCC
Q 020073           82 PKLRL-VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLG  160 (331)
Q Consensus        82 p~Lk~-I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~  160 (331)
                      ++++- +..+|+|+|++  .++.++||.++|+++++. +|||+       .+|++....+....+ |.+.    .+..+.
T Consensus       209 ~~i~GvveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~-------~~r~l~~~~~s~~~g-~~r~----~~~~l~  273 (494)
T 3ce6_A          209 ESVKGVTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKS-------KFDNKYGTRHSLIDG-INRG----TDALIG  273 (494)
T ss_dssp             HHCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHH-------TTHHHHHHHHHHHHH-HHHH----HCCCCT
T ss_pred             cCeEEEEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHH-------HHhhhhhhhhhhhHH-HHhc----cCCCCC
Confidence            34454 45889999998  688899999999999999 99994       345555444444333 5321    133688


Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      |++|+|+|+|.||+.+|++++++|++|+++++++.+      .+.. ..+++++++++|+|+.|++    +.++++++.+
T Consensus       274 GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~-~~~l~e~l~~aDvVi~atg----t~~~i~~~~l  348 (494)
T 3ce6_A          274 GKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFD-VVTVEEAIGDADIVVTATG----NKDIIMLEHI  348 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCHHHHGGGCSEEEECSS----SSCSBCHHHH
T ss_pred             cCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCE-EecHHHHHhCCCEEEECCC----CHHHHHHHHH
Confidence            999999999999999999999999999999987654      2332 3578899999999999974    5568898999


Q ss_pred             hcCCCCcEEEEcCCCCc-cCHHHHHH-HHHhCCceEEEeecCCCCCCCCC-ccccCCceE----EcCCCCCCcHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAV-IDENEMVR-CLVRGEIAGAGLDVFENEPYVPK-ELLELDNVV----LQPHRAVFTSECFVDL  307 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~-vd~~al~~-aL~~~~i~ga~lDV~~~EP~~~~-~L~~~~nvi----lTPH~a~~t~~~~~~~  307 (331)
                      +.||+|++++|+||+++ +|+++|.+ +|++++|. +++|+|+.++.... .++..+|++    +|||+++.+.++   +
T Consensus       349 ~~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~~~~l~LL~~grlvnL~~~TPH~a~~~~~s---~  424 (494)
T 3ce6_A          349 KAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNS---F  424 (494)
T ss_dssp             HHSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTTCCEEEEEGGGSCHHHHHSCCSCHHHHHHH---H
T ss_pred             HhcCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCcchHHHHHhCCCEEeccCCCCCccccchHH---H
Confidence            99999999999999999 99999998 88888997 66899876442122 477788998    999999988865   3


Q ss_pred             HHHHHHHHHHHHcCCCCCCCC
Q 020073          308 CELAVGNLEALFSNQPLLSPV  328 (331)
Q Consensus       308 ~~~~~~nl~~~~~g~~~~~~v  328 (331)
                      ...+.++++.|.+|+++.+.|
T Consensus       425 ~~qa~~ai~~~~~g~~~~~~V  445 (494)
T 3ce6_A          425 ANQTIAQIELWTKNDEYDNEV  445 (494)
T ss_dssp             HHHHHHHHHHHHTGGGCCSSE
T ss_pred             HHHHHHHHHHHHcCCCCCCEE
Confidence            778899999999998877665

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.91  E-value=4.4e-24  Score=206.26  Aligned_cols=237  Identities=14%  Similarity=0.119  Sum_probs=175.1

Q ss_pred             CCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCCCCChhHHhhCCcEEE----------eCCCCChHHHHHHHHHHHH
Q 020073           60 HSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVA----------NAGSIFSDDAADAAVGLLI  129 (331)
Q Consensus        60 ~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~----------n~~~~~~~~vAE~al~l~L  129 (331)
                      +++|+|+. ...++++++....|+..++.....++|...++++.++||.+.          |.|.++  ++||++..+++
T Consensus        66 ~~adii~~-vk~p~~~e~~~l~~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s--~~ae~ag~~a~  142 (377)
T 2vhw_A           66 ADADLLLK-VKEPIAAEYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLLA--PMSEVAGRLAA  142 (377)
T ss_dssp             HHCSEEEC-SSCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTH--HHHHHHHHHHH
T ss_pred             ccCCEEEE-eCCCChHHHhhcCCCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCccccC--chHHHHHHHHH
Confidence            45787754 455677888777888888888888899999999999999997          556554  56699985555


Q ss_pred             HHH-hchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCcc-
Q 020073          130 DVW-RKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYA-  200 (331)
Q Consensus       130 ~~~-r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~-  200 (331)
                      .+. |++.    ..+.|+|.....   ..++.|++|+|+|+|.||+.+|+.++++|++|+++|+++.+       .+.. 
T Consensus       143 ~~a~r~l~----~~~~g~~~~~~~---~~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~  215 (377)
T 2vhw_A          143 QVGAYHLM----RTQGGRGVLMGG---VPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRI  215 (377)
T ss_dssp             HHHHHHTS----GGGTSCCCCTTC---BTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSS
T ss_pred             HHHHHHHH----HhcCCCcccccC---CCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCee
Confidence            544 6652    233454422111   13689999999999999999999999999999999987643       1111 


Q ss_pred             -----ccCCHHhhhcCCCEEEEec--cCChhhhhhccHHHHhcCCCCcEEEEcC--CCCccCHHHHHHHHHhCCceEEEe
Q 020073          201 -----FYSNVCELAANSDALIICC--ALTDQTRRMINREVMLALGKEGIIVNVG--RGAVIDENEMVRCLVRGEIAGAGL  271 (331)
Q Consensus       201 -----~~~~l~ell~~aDiV~l~~--P~t~~t~~li~~~~l~~mk~ga~lIn~s--rg~~vd~~al~~aL~~~~i~ga~l  271 (331)
                           ...+++++++++|+|+.++  |.+ +|.++++++.++.||+|+++||+|  +|+                     
T Consensus       216 ~~~~~~~~~l~~~l~~aDvVi~~~~~p~~-~t~~li~~~~l~~mk~g~~iV~va~~~Gg---------------------  273 (377)
T 2vhw_A          216 HTRYSSAYELEGAVKRADLVIGAVLVPGA-KAPKLVSNSLVAHMKPGAVLVDIAIDQGG---------------------  273 (377)
T ss_dssp             EEEECCHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHTTSCTTCEEEEGGGGTTC---------------------
T ss_pred             EeccCCHHHHHHHHcCCCEEEECCCcCCC-CCcceecHHHHhcCCCCcEEEEEecCCCC---------------------
Confidence                 1235778899999999977  554 788999999999999999999999  332                     


Q ss_pred             ecCCC-CCCCC-CccccCCceE--EcCCCCCCcHHHH---------HHHHHHHHHHHH-HHHcCCCCCCCCC
Q 020073          272 DVFEN-EPYVP-KELLELDNVV--LQPHRAVFTSECF---------VDLCELAVGNLE-ALFSNQPLLSPVT  329 (331)
Q Consensus       272 DV~~~-EP~~~-~~L~~~~nvi--lTPH~a~~t~~~~---------~~~~~~~~~nl~-~~~~g~~~~~~v~  329 (331)
                       ||+. ||.+. .|+|..+||+  +|||+++.+..+.         ..+.+++.++.. .+..++++.+.+|
T Consensus       274 -v~e~~ep~~~~~~~~~~~~v~i~~~phl~~~~~~~as~~~~~~~~~~~~~l~~~g~~~~~~~~~~l~~~v~  344 (377)
T 2vhw_A          274 -CFEGSRPTTYDHPTFAVHDTLFYCVANMPASVPKTSTYALTNATMPYVLELADHGWRAACRSNPALAKGLS  344 (377)
T ss_dssp             -SBTTCCCBCSSSCEEEETTEEEECBTTGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHTTEE
T ss_pred             -ccccccCCCCCCCEEEECCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHHHhCChhhhhhcChHHhCcEE
Confidence             7888 88654 4899999999  9999999987632         233344444433 4555666665554

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.84  E-value=4e-22  Score=194.44  Aligned_cols=155  Identities=22%  Similarity=0.240  Sum_probs=124.9

Q ss_pred             Ccc-CCCceEEEEecChHHHHHHHHHhh-CCCEEEEECCCCCCCCccccCCHHhhhcCCCE-EEEeccCChhhhhhccHH
Q 020073          156 GSK-LGGKRVGIVGLGNIGLQVAKRLQA-FGCNVLYNSRSKKPVPYAFYSNVCELAANSDA-LIICCALTDQTRRMINRE  232 (331)
Q Consensus       156 ~~~-l~g~~vgIiG~G~IG~~~A~~l~~-~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDi-V~l~~P~t~~t~~li~~~  232 (331)
                      |.+ |+|+|++|+|+|+||+.+|+++++ |||+|++++++..........+++++++.+|. .++ +|+ ++|++ |+.+
T Consensus       206 G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~~~~~gvdl~~L~~~~d~~~~l-~~l-~~t~~-i~~~  282 (419)
T 1gtm_A          206 GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSV-KDF-PGATN-ITNE  282 (419)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSS-TTC-TTSEE-ECHH
T ss_pred             CCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccccCccCCCHHHHHHHHHhcCEe-ecC-ccCee-eCHH
Confidence            456 999999999999999999999999 99999998544322100111257777665543 222 566 57888 8999


Q ss_pred             HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCC--CccccCCceEEcCCC----C---------
Q 020073          233 VMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP--KELLELDNVVLQPHR----A---------  297 (331)
Q Consensus       233 ~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~--~~L~~~~nvilTPH~----a---------  297 (331)
                      .|..||+ .+|||++||.+||+++ +++|+++.|.+++     +||.++  ++||..+||++|||+    |         
T Consensus       283 ~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V~itPhiaaNaGGvt~s~~E~  355 (419)
T 1gtm_A          283 ELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEW  355 (419)
T ss_dssp             HHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHH
T ss_pred             HHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCEEEECchhhhCCcceeeeehh
Confidence            9999998 6999999999999999 6999999999887     899764  389999999999999    6         


Q ss_pred             --------CCcHHHHHHHHHHHHHHHHHHHc
Q 020073          298 --------VFTSECFVDLCELAVGNLEALFS  320 (331)
Q Consensus       298 --------~~t~~~~~~~~~~~~~nl~~~~~  320 (331)
                              |.+.+...++.+.+.+|+.++++
T Consensus       356 ~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~~  386 (419)
T 1gtm_A          356 VQNITGYYWTIEEVRERLDKKMTKAFYDVYN  386 (419)
T ss_dssp             HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence                    66778888899988899988873

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.81  E-value=4.8e-20  Score=177.41  Aligned_cols=274  Identities=17%  Similarity=0.205  Sum_probs=174.9

Q ss_pred             CCCchHHHHHHh-ccCcEEEeccC----CccHHHHHH---------hhcCCeeEEEEeCCCCCCHHHHhcC-CCceEEEE
Q 020073           25 PPLTLFGDKFIS-RSFQLLKAYES----SLSLEQFLI---------SHAHSIEAILCSGDSPVTLDILRLL-PKLRLVVT   89 (331)
Q Consensus        25 ~~~~~~~~~~l~-~~~~~~~~~~~----~~~~~~~l~---------~~~~~~d~ii~~~~~~i~~~~l~~~-p~Lk~I~~   89 (331)
                      ++.|+..++ |. ..+++..-...    .-+.+++..         +.+ ++|+|+.. ..++.++ ++.+ |+.++|..
T Consensus        17 ~l~P~~v~~-L~~~g~~v~ve~~ag~~~~~~d~~y~~aga~i~~~~~~~-~ad~il~v-k~p~~~~-~~~l~~~~~~~~~   92 (369)
T 2eez_A           17 ALTPGGVES-LVRRGHTVLVERGAGEGSGLSDAEYARAGAELVGREEAW-GAEMVVKV-KEPLPEE-YGFLREGLILFTY   92 (369)
T ss_dssp             SSCHHHHHH-HHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECHHHHT-TSSEEECS-SCCCGGG-GGGCCTTCEEEEC
T ss_pred             CcCHHHHHH-HHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEeccccee-cCCEEEEE-CCCCHHH-HhhcCCCcEEEEE
Confidence            346777777 54 45665331111    123344432         134 78987753 3455444 6665 78999999


Q ss_pred             ccCCCCCCChhHHhhCCcEEE---eCCCC-Ch----HHHHHHHH--HHHHHHHhchHHHHHHHHcCCcccCCCCCCCccC
Q 020073           90 ASAGVNHIHMPECRRRGIAVA---NAGSI-FS----DDAADAAV--GLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKL  159 (331)
Q Consensus        90 ~~~G~d~id~~~~~~~gI~v~---n~~~~-~~----~~vAE~al--~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l  159 (331)
                      ...+.|..+++++.++||.+.   +.+.. ..    .++++.+-  +.+++ ++.+.....  .++.|..    . ..++
T Consensus        93 ~~~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av~~a-~~~l~~~~~--g~~~~~~----~-~~~l  164 (369)
T 2eez_A           93 LHLAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAPQVG-AQFLEKPKG--GRGVLLG----G-VPGV  164 (369)
T ss_dssp             CCGGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHHHHH-HHHTSGGGT--SCCCCTT----C-BTBB
T ss_pred             ecccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHHHHH-HHHHHHhcC--CCceecC----C-CCCC
Confidence            999999999999999999997   44432 11    45555444  33322 222221100  0111211    1 1368


Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCcc------ccCCHHhhhcCCCEEEEeccCCh-hh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYA------FYSNVCELAANSDALIICCALTD-QT  225 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~------~~~~l~ell~~aDiV~l~~P~t~-~t  225 (331)
                      .+++++|+|.|.||+.+|+.++++|++|+++++++.+       .+..      ...+++++++++|+|+.|++... .+
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~  244 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKA  244 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCcccc
Confidence            9999999999999999999999999999999987643       1111      12357788899999999998765 67


Q ss_pred             hhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCC-CCccccCCceE---------EcCC
Q 020073          226 RRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYV-PKELLELDNVV---------LQPH  295 (331)
Q Consensus       226 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~-~~~L~~~~nvi---------lTPH  295 (331)
                      ..++.++.++.||+|+++||++-.             .|   |+ +|++  ||.+ +.|++..+|+.         +|||
T Consensus       245 ~~li~~~~l~~mk~gg~iV~v~~~-------------~g---g~-~d~~--ep~~~~~~~~~~~~v~~~~v~~lp~~~p~  305 (369)
T 2eez_A          245 PKLVTRDMLSLMKEGAVIVDVAVD-------------QG---GC-VETI--RPTTHAEPTYVVDGVVHYGVANMPGAVPR  305 (369)
T ss_dssp             -CCSCHHHHTTSCTTCEEEECC--------------------------------------CEETTEEEECCSCSGGGSHH
T ss_pred             chhHHHHHHHhhcCCCEEEEEecC-------------CC---CC-CCcc--cCCCCCCCEEEECCEEEEeeCCcchhcHH
Confidence            788899999999999999999821             22   44 9998  6643 34789999999         8899


Q ss_pred             CCCC--cHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 020073          296 RAVF--TSECFVDLCELAVGNLEALFSNQPLLSPVT  329 (331)
Q Consensus       296 ~a~~--t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  329 (331)
                      +|+.  +.+....+.+.+.+++..++.++.+.+.+|
T Consensus       306 ~as~~~~~~~~~~l~~l~~~g~~~~~~~~~l~~~~~  341 (369)
T 2eez_A          306 TSTFALTNQTLPYVLKLAEKGLDALLEDAALLKGLN  341 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHSCHHHHTTEE
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhcChHHhcCEE
Confidence            9885  567788899999999988888876666554

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.76  E-value=2.8e-18  Score=166.85  Aligned_cols=184  Identities=18%  Similarity=0.205  Sum_probs=133.3

Q ss_pred             eeEEEEeCCCCCCHHHHhcC-CCceEEEEccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHH--
Q 020073           62 IEAILCSGDSPVTLDILRLL-PKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSA--  138 (331)
Q Consensus        62 ~d~ii~~~~~~i~~~~l~~~-p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~--  138 (331)
                      +|+|+.. .. .+++.++.+ |++++|+..+.|+|++|++++.++||.+.+     .+.|+|++.++.|.+++.+...  
T Consensus        73 adiil~v-k~-p~~~~i~~l~~~~~li~~~~~~~d~~~~~al~~~gI~v~~-----~e~v~~~~~a~~l~~l~~~a~~ag  145 (401)
T 1x13_A           73 SEIILKV-NA-PLDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMA-----MDSVPRISRAQSLDALSSMANIAG  145 (401)
T ss_dssp             SSEEECS-SC-CCHHHHTTCCTTCEEEECCCGGGCHHHHHHHHHTTCEEEE-----GGGCCCSGGGGGGCHHHHHHHHHH
T ss_pred             CCeEEEe-CC-CCHHHHHHhcCCCcEEEEecCCCCHHHHHHHHHCCCEEEE-----eehhhhhhhhcccchHHHHHHHHH
Confidence            7887753 23 346778886 789999999999999999999999999964     3455555555543333333222  


Q ss_pred             HHHHHcCCcccCCCC-----CCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccC----
Q 020073          139 DRFLRQGLWSKIGDY-----PLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYS----  203 (331)
Q Consensus       139 ~~~~~~g~w~~~~~~-----~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~----  203 (331)
                      ...++.+.|.....+     ..| ++.|++|+|+|+|.||..+++.++++|++|+++|+++..      .+.....    
T Consensus       146 ~~av~~~~~~~~~~~~~~~~~~g-~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~  224 (401)
T 1x13_A          146 YRAIVEAAHEFGRFFTGQITAAG-KVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFK  224 (401)
T ss_dssp             HHHHHHHHHHCSSCSSCEEETTE-EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC---
T ss_pred             HHHHHHHHHhcccccCCceeecc-CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEeccc
Confidence            223333333211001     012 578999999999999999999999999999999998654      2221110    


Q ss_pred             -----------------------CHHhhhcCCCEEEEe--ccCChhhhhhccHHHHhcCCCCcEEEEcC--CCCccCH
Q 020073          204 -----------------------NVCELAANSDALIIC--CALTDQTRRMINREVMLALGKEGIIVNVG--RGAVIDE  254 (331)
Q Consensus       204 -----------------------~l~ell~~aDiV~l~--~P~t~~t~~li~~~~l~~mk~ga~lIn~s--rg~~vd~  254 (331)
                                             ++.++++++|+|+.|  +|.. .+.++++++.++.||+|+++||+|  ||+.+++
T Consensus       225 ~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~aDvVI~~~~~pg~-~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~  301 (401)
T 1x13_A          225 EEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGK-PAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY  301 (401)
T ss_dssp             -----CCHHHHHHSHHHHHHHHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred             ccccccccchhhccHHHHHHHHHHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence                                   377888999999999  5543 366889999999999999999999  8887765

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.73  E-value=1.1e-17  Score=162.69  Aligned_cols=152  Identities=18%  Similarity=0.239  Sum_probs=114.2

Q ss_pred             EEccCCCCCCC-hhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEE
Q 020073           88 VTASAGVNHIH-MPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGI  166 (331)
Q Consensus        88 ~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgI  166 (331)
                      =-+++|+..+. +....+.+|+|.|++.....+..+...+..-++...+      .+.          .+.++.|++|+|
T Consensus       153 EeTttGv~rL~~~~~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi------~ra----------tg~~L~GktVgI  216 (436)
T 3h9u_A          153 EETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGI------KRA----------TDVMIAGKTACV  216 (436)
T ss_dssp             ECSHHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHH------HHH----------HCCCCTTCEEEE
T ss_pred             eccCcChHHHHHHHHcCCCCCceEeechhhhhhhhhccccchHHHHHHH------HHh----------cCCcccCCEEEE
Confidence            44566765542 3344568999999987555554443333222222221      111          135689999999


Q ss_pred             EecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCC
Q 020073          167 VGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKE  240 (331)
Q Consensus       167 iG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~g  240 (331)
                      +|+|.||+.+|++|++||++|+++++++..      .+. ...++++++++||+|++    ++.|.++|+++.|++||+|
T Consensus       217 iG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~-~~~sL~eal~~ADVVil----t~gt~~iI~~e~l~~MK~g  291 (436)
T 3h9u_A          217 CGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGY-QVLLVEDVVEEAHIFVT----TTGNDDIITSEHFPRMRDD  291 (436)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-EECCHHHHTTTCSEEEE----CSSCSCSBCTTTGGGCCTT
T ss_pred             EeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCC-eecCHHHHHhhCCEEEE----CCCCcCccCHHHHhhcCCC
Confidence            999999999999999999999999987643      222 34689999999999996    4467899999999999999


Q ss_pred             cEEEEcCCCCc-cCHHHHHHH
Q 020073          241 GIIVNVGRGAV-IDENEMVRC  260 (331)
Q Consensus       241 a~lIn~srg~~-vd~~al~~a  260 (331)
                      +++||+|||.+ ||.++|.+.
T Consensus       292 AIVINvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          292 AIVCNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             EEEEECSSSGGGBCHHHHHHH
T ss_pred             cEEEEeCCCCCccCHHHHHhh
Confidence            99999999997 999999764

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.69  E-value=2.1e-16  Score=152.82  Aligned_cols=189  Identities=15%  Similarity=0.214  Sum_probs=130.1

Q ss_pred             hcCCeeEEEEeCCCCC----CHHHHhcCC-CceEEEEccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHH
Q 020073           58 HAHSIEAILCSGDSPV----TLDILRLLP-KLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVW  132 (331)
Q Consensus        58 ~~~~~d~ii~~~~~~i----~~~~l~~~p-~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~  132 (331)
                      .++++|+|+.. ..++    +++.++.++ .+++|+....+.|+.+++++.++||.+++... ..+.+++..+. +|+..
T Consensus        64 ~~~~adiil~v-~~p~~~~~~~~~i~~l~~~~~~i~~~~~~~~~~~~~~~~~~gi~~~~~e~-~~~~~~~~~l~-~l~~~  140 (384)
T 1l7d_A           64 ALSQADVVWKV-QRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMEL-MPRISRAQSMD-ILSSQ  140 (384)
T ss_dssp             HHSSCSEEEEE-ECCCCGGGSCCGGGGSCTTCEEEEECCGGGCHHHHHHHHHTTCEEEEGGG-CCCSGGGGGGC-HHHHH
T ss_pred             hhcCCCEEEEe-cCcccccCCHHHHHhhccCCEEEEEecccCCHHHHHHHHHCCCEEEEecc-ccccccccccc-hhhHH
Confidence            34688988864 3455    678889886 69999999999999999999999999998421 11111122222 22222


Q ss_pred             hchHHHHHHHHcCCcccCCCCC--C-C-ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcccc
Q 020073          133 RKISSADRFLRQGLWSKIGDYP--L-G-SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFY  202 (331)
Q Consensus       133 r~~~~~~~~~~~g~w~~~~~~~--~-~-~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~  202 (331)
                      +.+. ....+..+.|.....++  . + .++.|++|+|+|+|.||+.+++.++++|++|+++|+++..      .+....
T Consensus       141 a~~a-g~~av~~~~~~~~~~~~~~~~~~~~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~  219 (384)
T 1l7d_A          141 SNLA-GYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFI  219 (384)
T ss_dssp             HHHH-HHHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEEC
T ss_pred             HHHH-HHHHHHHHHHHhhhcccchhccCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEE
Confidence            2221 22223333332110011  0 1 3689999999999999999999999999999999998754      222111


Q ss_pred             ---C--------------------------CHHhhhcCCCEEEEec--cCChhhhhhccHHHHhcCCCCcEEEEcC--CC
Q 020073          203 ---S--------------------------NVCELAANSDALIICC--ALTDQTRRMINREVMLALGKEGIIVNVG--RG  249 (331)
Q Consensus       203 ---~--------------------------~l~ell~~aDiV~l~~--P~t~~t~~li~~~~l~~mk~ga~lIn~s--rg  249 (331)
                         .                          .+.++++++|+|+.|+  |.. .+.++++++.++.||+|+++||++  ||
T Consensus       220 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~-~~~~li~~~~l~~mk~g~vivdva~~~g  298 (384)
T 1l7d_A          220 TVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDLAVEAG  298 (384)
T ss_dssp             CC-----------------------CCHHHHHHHHHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEETTGGGT
T ss_pred             eecccccccccccccchhhcCHHHHhhhHHHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCCEEEEEecCCC
Confidence               0                          1778889999999887  433 245788999999999999999999  76


Q ss_pred             Cc
Q 020073          250 AV  251 (331)
Q Consensus       250 ~~  251 (331)
                      +.
T Consensus       299 g~  300 (384)
T 1l7d_A          299 GN  300 (384)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.69  E-value=9.2e-19  Score=170.45  Aligned_cols=208  Identities=19%  Similarity=0.243  Sum_probs=157.9

Q ss_pred             CCceEEEEccCCCCCCChhHHh-----hCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccC-CCCCC
Q 020073           82 PKLRLVVTASAGVNHIHMPECR-----RRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKI-GDYPL  155 (331)
Q Consensus        82 p~Lk~I~~~~~G~d~id~~~~~-----~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~-~~~~~  155 (331)
                      +.+++|...++|+|++++.+..     ++++.+++.+|.. .+++++.+..++.+.|++....... .+.|... .....
T Consensus        80 ~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~~-~~~~~~~~~~a~~~~k~v~~~~~~~-~~~~s~a~~av~~  157 (404)
T 1gpj_A           80 EAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGTL-DEALKIVFRRAINLGKRAREETRIS-EGAVSIGSAAVEL  157 (404)
T ss_dssp             HHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHHHHSSTT-CSCCSHHHHHHHH
T ss_pred             hHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCCc-hHHHHHHHHHHhhhhccCcchhhhc-CCCccHHHHHHHH
Confidence            4688999999999999998887     7899999998874 6899999999999999987654322 3344310 00001


Q ss_pred             C----ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-------CCcc--ccCCHHhhhcCCCEEEEeccC
Q 020073          156 G----SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-------VPYA--FYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       156 ~----~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------~~~~--~~~~l~ell~~aDiV~l~~P~  221 (331)
                      .    .++.|++++|||+|.||+.+++.++.+|+ +|++++|+..+       .+..  ...++.+++.++|+|+.|+|.
T Consensus       158 a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~  237 (404)
T 1gpj_A          158 AERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA  237 (404)
T ss_dssp             HHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred             HHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCC
Confidence            1    14789999999999999999999999999 99999998643       1221  134678889999999999764


Q ss_pred             ChhhhhhccHHHHhc--CC----CCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCC-CCccccCCceEE--
Q 020073          222 TDQTRRMINREVMLA--LG----KEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYV-PKELLELDNVVL--  292 (331)
Q Consensus       222 t~~t~~li~~~~l~~--mk----~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~-~~~L~~~~nvil--  292 (331)
                      +   .++++++.++.  ||    ++.++||++                             +|.. +++++++|||++  
T Consensus       238 ~---~~~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~~i~~~l~~l~~v~l~d  285 (404)
T 1gpj_A          238 P---HPVIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPRDVEEGVENIEDVEVRT  285 (404)
T ss_dssp             S---SCCBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSCSBCTTGGGSTTEEEEE
T ss_pred             C---CceecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCCCCCccccccCCeEEEe
Confidence            4   55677777776  42    456777765                             3542 458999999999  


Q ss_pred             cCCCCCCcHHHHH----------HHHHHHHHHHHHHHcCCC
Q 020073          293 QPHRAVFTSECFV----------DLCELAVGNLEALFSNQP  323 (331)
Q Consensus       293 TPH~a~~t~~~~~----------~~~~~~~~nl~~~~~g~~  323 (331)
                      +||+++.+.++..          .+....++++..|+.+.+
T Consensus       286 ~d~l~~~~~~~~~~r~~~~~~~~~li~q~~~~f~~w~~~~~  326 (404)
T 1gpj_A          286 IDDLRVIARENLERRRKEIPKVEKLIEEELSTVEEELEKLK  326 (404)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999887654          666777888888886643

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.69  E-value=6.7e-17  Score=157.07  Aligned_cols=151  Identities=15%  Similarity=0.177  Sum_probs=111.1

Q ss_pred             EEccCCCCCCC-hhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEE
Q 020073           88 VTASAGVNHIH-MPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGI  166 (331)
Q Consensus        88 ~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgI  166 (331)
                      =-+++|+-.+- ........+++.|+.+    ++..+-+-......+.+.....  |.          .+.++.|++++|
T Consensus       189 EeTtTGv~rL~~m~~~g~L~~PvinVnd----s~tK~~fDn~yG~~eslvdgI~--Ra----------tg~~L~GKTVgV  252 (464)
T 3n58_A          189 EETTTGVNRLYQLQKKGLLPFPAINVND----SVTKSKFDNKYGCKESLVDGIR--RG----------TDVMMAGKVAVV  252 (464)
T ss_dssp             ECSHHHHHHHHHHHHHTCCCSCEEECTT----SHHHHTTHHHHHHHHHHHHHHH--HH----------HCCCCTTCEEEE
T ss_pred             eccccchHHHHHHHHcCCCCCCEEeecc----HhhhhhhhhhhcchHHHHHHHH--Hh----------cCCcccCCEEEE
Confidence            34566665542 2222345788898865    4444444444443333332221  11          245799999999


Q ss_pred             EecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCC
Q 020073          167 VGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKE  240 (331)
Q Consensus       167 iG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~g  240 (331)
                      +|+|.||+.+|+++++|||+|+++++.+..      .++ ...++++++++||+|+++.    .|+++|+++.|++||+|
T Consensus       253 IG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~-~vv~LeElL~~ADIVv~at----gt~~lI~~e~l~~MK~G  327 (464)
T 3n58_A          253 CGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGF-EVVTLDDAASTADIVVTTT----GNKDVITIDHMRKMKDM  327 (464)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTC-EECCHHHHGGGCSEEEECC----SSSSSBCHHHHHHSCTT
T ss_pred             ECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCc-eeccHHHHHhhCCEEEECC----CCccccCHHHHhcCCCC
Confidence            999999999999999999999999886532      222 2468999999999999864    47899999999999999


Q ss_pred             cEEEEcCCCCc-cCHHHHHH
Q 020073          241 GIIVNVGRGAV-IDENEMVR  259 (331)
Q Consensus       241 a~lIn~srg~~-vd~~al~~  259 (331)
                      ++|||+|||.+ +|.++|.+
T Consensus       328 AILINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          328 CIVGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             EEEEECSSSTTTBTCGGGTT
T ss_pred             eEEEEcCCCCcccCHHHHHh
Confidence            99999999998 99999874

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.62  E-value=1e-15  Score=148.51  Aligned_cols=155  Identities=18%  Similarity=0.300  Sum_probs=109.3

Q ss_pred             CceEE-EEccCCCCCCC-hhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCC
Q 020073           83 KLRLV-VTASAGVNHIH-MPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLG  160 (331)
Q Consensus        83 ~Lk~I-~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~  160 (331)
                      +++-+ =-+++|+-.+- .....+..++|.|+.+....+--+...+.--++.    ..  ..+.          .+..+.
T Consensus       156 ~i~G~~EeTttGv~rl~~~~~~g~L~~Pvi~vnds~tK~~fDn~yGt~~s~~----~g--i~ra----------t~~~L~  219 (435)
T 3gvp_A          156 KIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESIL----DG--LKRT----------TDMMFG  219 (435)
T ss_dssp             TCCEEEECCHHHHHHHTCC--CCCCCSCEEECTTCHHHHHHHTHHHHHHHHH----HH--HHHH----------HCCCCT
T ss_pred             hcceeEeccchhHHHHHHHHHcCCCCCCEEEecchhhhhhhhhhhhhHHHHH----HH--HHHh----------hCceec
Confidence            44433 34566665431 2223346799999988655544332222111111    11  1111          134689


Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      |++++|+|+|.||+.+|+++++||++|+++++++..      .++ ...++++++++||+|++|    +.|.++|+++.|
T Consensus       220 GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~-~v~~Leeal~~ADIVi~a----tgt~~lI~~e~l  294 (435)
T 3gvp_A          220 GKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGF-RLVKLNEVIRQVDIVITC----TGNKNVVTREHL  294 (435)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-EECCHHHHTTTCSEEEEC----SSCSCSBCHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCC-EeccHHHHHhcCCEEEEC----CCCcccCCHHHH
Confidence            999999999999999999999999999999987632      222 246899999999999995    457889999999


Q ss_pred             hcCCCCcEEEEcCCCCc-cCHHHHH
Q 020073          235 LALGKEGIIVNVGRGAV-IDENEMV  258 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~-vd~~al~  258 (331)
                      ++||+|+++||+|||.+ +|.++|.
T Consensus       295 ~~MK~gailINvgrg~~EId~~~L~  319 (435)
T 3gvp_A          295 DRMKNSCIVCNMGHSNTEIDVASLR  319 (435)
T ss_dssp             HHSCTTEEEEECSSTTTTBTGGGGC
T ss_pred             HhcCCCcEEEEecCCCccCCHHHHH
Confidence            99999999999999998 7877764

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.38  E-value=1.4e-12  Score=122.42  Aligned_cols=137  Identities=12%  Similarity=0.136  Sum_probs=92.0

Q ss_pred             HHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCC--CC------CCccccCCHHhhhc
Q 020073          140 RFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSK--KP------VPYAFYSNVCELAA  210 (331)
Q Consensus       140 ~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~--~~------~~~~~~~~l~ell~  210 (331)
                      +..+++.|.+.+.++.......++|||||+|.||+.+|+.|...|+ +|++||+++  ..      .+.....++.++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~   82 (312)
T 3qsg_A            3 HHHHHSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAG   82 (312)
T ss_dssp             ----------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHH
T ss_pred             cccccccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHh
Confidence            4456777876655554444556899999999999999999999999 999999973  22      34445678999999


Q ss_pred             CCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC--CceEEEeecCCCCC
Q 020073          211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG--EIAGAGLDVFENEP  278 (331)
Q Consensus       211 ~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~--~i~ga~lDV~~~EP  278 (331)
                      +||+|++|+|...... .+ .+....++++.++||++........++.+.+.+.  .+....--|+.++|
T Consensus        83 ~aDvVi~~vp~~~~~~-~~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~  150 (312)
T 3qsg_A           83 ECDVIFSLVTAQAALE-VA-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVK  150 (312)
T ss_dssp             HCSEEEECSCTTTHHH-HH-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCST
T ss_pred             cCCEEEEecCchhHHH-HH-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCch
Confidence            9999999999776555 33 5677789999999999999999999999998876  44322223555444

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.38  E-value=1.4e-12  Score=121.68  Aligned_cols=108  Identities=16%  Similarity=0.232  Sum_probs=92.4

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML  235 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~  235 (331)
                      ++||+||+|.||..+|++|...|++|++|||++++      .+.....++.|+++.+|+|++|+|..+.++..+....+.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~   85 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVE   85 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHH
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHh
Confidence            57999999999999999999999999999998865      234556799999999999999999988888888888999


Q ss_pred             cCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEE
Q 020073          236 ALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGA  269 (331)
Q Consensus       236 ~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga  269 (331)
                      .+++|.++|+++....-+...+.+.+.+..+...
T Consensus        86 ~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~l  119 (297)
T 4gbj_A           86 KLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYV  119 (297)
T ss_dssp             HHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             hcCCCeEEEECCCCChHHHHHHHHHHHhcCCcee
Confidence            9999999999999999999999999999888633

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.37  E-value=5.6e-12  Score=118.56  Aligned_cols=160  Identities=16%  Similarity=0.182  Sum_probs=104.2

Q ss_pred             HHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC------CCc--cccCCHHh-hh
Q 020073          141 FLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP------VPY--AFYSNVCE-LA  209 (331)
Q Consensus       141 ~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~------~~~--~~~~~l~e-ll  209 (331)
                      .+-++.|.... .+....+..++|||||+|.||+.+|+.|+..|+  +|+++|++++.      .+.  ....++++ ++
T Consensus        14 ~~~~~~~~~~~-~~~~~~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~   92 (314)
T 3ggo_A           14 LVPRGSHMKNI-IKILKSLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVED   92 (314)
T ss_dssp             ----------------CCCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGG
T ss_pred             ccccccCcCcC-CchhhhcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhh
Confidence            34455664431 222234556899999999999999999999999  99999998653      222  23467888 89


Q ss_pred             cCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCC---CCC-Cccc
Q 020073          210 ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEP---YVP-KELL  285 (331)
Q Consensus       210 ~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP---~~~-~~L~  285 (331)
                      ++||+|++|+|... +..++ ++....+++++++++++..+....+++.+.+.. ++.+. -=++..|-   ... .+|+
T Consensus        93 ~~aDvVilavp~~~-~~~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~-~~v~~-hPm~G~e~sG~~~A~~~Lf  168 (314)
T 3ggo_A           93 FSPDFVMLSSPVRT-FREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVGG-HPIAGTEKSGVEYSLDNLY  168 (314)
T ss_dssp             GCCSEEEECSCGGG-HHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEECE-EECCCCCCCSGGGCCTTTT
T ss_pred             ccCCEEEEeCCHHH-HHHHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC-CEEec-CcccCCcccchhhhhhhhh
Confidence            99999999999663 45555 566677999999999998776556677776655 33221 23444442   111 2588


Q ss_pred             cCCceEEcCCCCCCcHHHHHH
Q 020073          286 ELDNVVLQPHRAVFTSECFVD  306 (331)
Q Consensus       286 ~~~nvilTPH~a~~t~~~~~~  306 (331)
                      ....+++||+-+ .+.+..+.
T Consensus       169 ~g~~~il~~~~~-~~~~~~~~  188 (314)
T 3ggo_A          169 EGKKVILTPTKK-TDKKRLKL  188 (314)
T ss_dssp             TTCEEEECCCTT-SCHHHHHH
T ss_pred             cCCEEEEEeCCC-CCHHHHHH
Confidence            888999999844 34444443

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.37  E-value=7.8e-13  Score=123.69  Aligned_cols=111  Identities=13%  Similarity=0.161  Sum_probs=97.0

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc--HH
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN--RE  232 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~--~~  232 (331)
                      .++||+||+|.||..+|++|...|++|++|||++.+      .+.....++.|+.+.||+|++|+|..+.++.++.  ..
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g   82 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDG   82 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSS
T ss_pred             cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhh
Confidence            368999999999999999999999999999998765      3555678999999999999999999998888773  34


Q ss_pred             HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeec
Q 020073          233 VMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDV  273 (331)
Q Consensus       233 ~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV  273 (331)
                      .++.+++|.++||+|....-+...+.+.+.+..+.  .+|.
T Consensus        83 ~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~--~lDa  121 (300)
T 3obb_A           83 LLAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  121 (300)
T ss_dssp             STTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEec
Confidence            67889999999999999999999999999998886  4664

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.36  E-value=6.9e-13  Score=124.86  Aligned_cols=112  Identities=14%  Similarity=0.164  Sum_probs=95.0

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      ....++|||||+|.||+.+|+.|...|++|++|||+++.      .+.....++.+++++||+|++|+|....++.++..
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~  107 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA  107 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTT
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcc
Confidence            345679999999999999999999999999999998754      23445678999999999999999987777777643


Q ss_pred             -HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEE
Q 020073          232 -EVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGA  269 (331)
Q Consensus       232 -~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga  269 (331)
                       +.++.+++|.++||++++...+.+.+.+.+.+..+...
T Consensus       108 ~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~  146 (320)
T 4dll_A          108 QGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHL  146 (320)
T ss_dssp             TCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             hhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEE
Confidence             56777999999999999999999999999998776533

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.36  E-value=7.3e-13  Score=123.94  Aligned_cols=110  Identities=17%  Similarity=0.077  Sum_probs=94.2

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      ++..++|||||+|.||+.+|+.|...|++|++|||++..      .+.....++.+++++||+|++|+|....++.++..
T Consensus         6 ~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~   85 (306)
T 3l6d_A            6 ESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLGM   85 (306)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHTS
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhcc
Confidence            456789999999999999999999999999999998754      23444678999999999999999988778887753


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          232 EVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      +.+..+++|.++||++++...+.+.+.+.+.+..+.
T Consensus        86 ~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~  121 (306)
T 3l6d_A           86 PGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH  121 (306)
T ss_dssp             TTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE
T ss_pred             cchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            345667899999999999999999999999887665

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.33  E-value=2.2e-12  Score=120.80  Aligned_cols=112  Identities=12%  Similarity=0.058  Sum_probs=93.9

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhc
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMI  229 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li  229 (331)
                      ......++|||||+|.||+.+|+.|...|++|++|||++..      .+.....++.+++++||+|++|+|....++.++
T Consensus        16 ~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~   95 (310)
T 3doj_A           16 PRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVV   95 (310)
T ss_dssp             --CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred             cccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHH
Confidence            34556789999999999999999999999999999998765      234456789999999999999999877777766


Q ss_pred             --cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          230 --NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       230 --~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                        ..+.+..+++|.++||+++......+.+.+.+.+..+.
T Consensus        96 ~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  135 (310)
T 3doj_A           96 FDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR  135 (310)
T ss_dssp             HSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence              24566779999999999999998889999999887664

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.32  E-value=3.8e-12  Score=118.46  Aligned_cols=107  Identities=21%  Similarity=0.227  Sum_probs=92.9

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      .++|||||+|.||+.+|+.|...|++|++|||++..      .+.....+++++++ ||+|++|+|....++..+ .+.+
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~   92 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA   92 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH
Confidence            368999999999999999999999999999998876      23445678999999 999999999877888777 6777


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEE
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGA  269 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga  269 (331)
                      +.+++|.++||++++.....+.+.+.+.+..+...
T Consensus        93 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~  127 (296)
T 3qha_A           93 GHAKPGTVIAIHSTISDTTAVELARDLKARDIHIV  127 (296)
T ss_dssp             TTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEE
T ss_pred             HhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEE
Confidence            88999999999999999999999999988766533

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.31  E-value=2.6e-11  Score=111.47  Aligned_cols=134  Identities=16%  Similarity=0.225  Sum_probs=100.3

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC------CCcc--ccCCHHhhhc-CCCEEEEeccCChhhhhhcc
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP------VPYA--FYSNVCELAA-NSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~------~~~~--~~~~l~ell~-~aDiV~l~~P~t~~t~~li~  230 (331)
                      ++|+|||+|.||+.+|+.|+..|+  +|++++++++.      .+..  ...+++++++ ++|+|++|+|.. .+..++.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~   80 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIAK   80 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHHH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHHH
Confidence            579999999999999999999998  99999987643      2221  2457888999 999999999955 5556663


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCC---CC-CccccCCceEEcCCCCCC
Q 020073          231 REVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPY---VP-KELLELDNVVLQPHRAVF  299 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~---~~-~~L~~~~nvilTPH~a~~  299 (331)
                       +....+++++++++++++.....+.+.+.+..+.+.  ..-++..|..   .. .+++...+++++||.++.
T Consensus        81 -~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~--~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~  150 (281)
T 2g5c_A           81 -KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVG--GHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD  150 (281)
T ss_dssp             -HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEEC--EEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSC
T ss_pred             -HHHhhCCCCcEEEECCCCcHHHHHHHHHhcccccee--eccccCCccCChhhhhhHHhCCCCEEEecCCCCC
Confidence             456678999999999998876777888888764221  1234444431   11 257788899999997764

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.29  E-value=4.5e-12  Score=117.18  Aligned_cols=106  Identities=19%  Similarity=0.254  Sum_probs=91.6

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhc--cHHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMI--NREV  233 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li--~~~~  233 (331)
                      ++|||||+|.||+.+|+.|...|++|++|+|++..      .+.....++.+++++||+|++|+|....++.++  .++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l   81 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV   81 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence            58999999999999999999999999999998765      234456789999999999999999777777766  2556


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      ++.+++|.++||++.....+.+.+.+.+.+..+.
T Consensus        82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pef_A           82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR  115 (287)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE
Confidence            6779999999999999999999999999887665

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.29  E-value=6.6e-12  Score=120.15  Aligned_cols=116  Identities=15%  Similarity=0.224  Sum_probs=97.7

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCC---CEEEEeccCChhhhhhc
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANS---DALIICCALTDQTRRMI  229 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~a---DiV~l~~P~t~~t~~li  229 (331)
                      +.+++|||||+|.||+.+|+.|...|++|.+|||++..      .+.....+++++++.+   |+|++|+|.. .++.++
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl   98 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML   98 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH
Confidence            56789999999999999999999999999999998654      2344457899999988   9999999977 777777


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCC
Q 020073          230 NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFEN  276 (331)
Q Consensus       230 ~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~  276 (331)
                       .+.+..+++|.++|+++.+...+...+.+.+.+..+......|+..
T Consensus        99 -~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg  144 (358)
T 4e21_A           99 -QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGG  144 (358)
T ss_dssp             -HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECG
T ss_pred             -HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence             5677889999999999999999999999999998887555555544

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.26  E-value=4.7e-12  Score=117.06  Aligned_cols=106  Identities=18%  Similarity=0.151  Sum_probs=90.5

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhc--cHHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMI--NREV  233 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li--~~~~  233 (331)
                      ++|||||+|.||+.+|+.|...|++|++|||+++.      .+.....++.+++++||+|++|+|....++.++  ..+.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l   81 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV   81 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence            57999999999999999999999999999998765      233445789999999999999999877777766  2455


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      ++.+++|.++||++++...+.+.+.+.+.+..+.
T Consensus        82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pdu_A           82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR  115 (287)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            6778999999999999999999999999887665

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.25  E-value=5.4e-11  Score=109.92  Aligned_cols=135  Identities=13%  Similarity=0.128  Sum_probs=100.0

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----C-C--------------------------ccccCCHHhhhc
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----V-P--------------------------YAFYSNVCELAA  210 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~-~--------------------------~~~~~~l~ell~  210 (331)
                      ++|+|||+|.||+.+|+.+...|++|+++|++++.    . .                          .....++.++++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            68999999999999999999999999999998653    0 0                          123467888999


Q ss_pred             CCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCce
Q 020073          211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNV  290 (331)
Q Consensus       211 ~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nv  290 (331)
                      +||+|+.++|.+.+...-+-++..+.+++++++++.+.+  +...++.+++... -...++..|.       |.+..+.+
T Consensus        85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~~-~~~ig~h~~~-------p~~~~~lv  154 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGRG-DKFLALHFAN-------HVWVNNTA  154 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSCG-GGEEEEEECS-------STTTSCEE
T ss_pred             cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCC-cceEEEccCC-------CcccCceE
Confidence            999999999988777766667777889999999965555  3567777777543 2345565553       45567788


Q ss_pred             EEcCCCCCCcHHHHHHH
Q 020073          291 VLQPHRAVFTSECFVDL  307 (331)
Q Consensus       291 ilTPH~a~~t~~~~~~~  307 (331)
                      .++||- ..+.+..+..
T Consensus       155 evv~~~-~t~~~~~~~~  170 (283)
T 4e12_A          155 EVMGTT-KTDPEVYQQV  170 (283)
T ss_dssp             EEEECT-TSCHHHHHHH
T ss_pred             EEEeCC-CCCHHHHHHH
Confidence            899983 3344444433

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.25  E-value=5.9e-12  Score=117.43  Aligned_cols=107  Identities=21%  Similarity=0.220  Sum_probs=90.3

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccc-cCCHHhhhcCCCEEEEeccCChhhhhhcc--H
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAF-YSNVCELAANSDALIICCALTDQTRRMIN--R  231 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~-~~~l~ell~~aDiV~l~~P~t~~t~~li~--~  231 (331)
                      .++|||||+|.||+.+|+.|...|++|++|||++..      .+... ..++.+++++||+|++|+|....++.++.  +
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~   86 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGED   86 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--C
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChh
Confidence            468999999999999999999999999999998754      23333 57889999999999999998777777652  4


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          232 EVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      +.++.+++|.++||+++......+.+.+.+.+..+.
T Consensus        87 ~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~  122 (303)
T 3g0o_A           87 GVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN  122 (303)
T ss_dssp             CCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCe
Confidence            456778999999999999988889999999886654

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.24  E-value=4.6e-11  Score=113.85  Aligned_cols=102  Identities=20%  Similarity=0.274  Sum_probs=87.0

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhc-CCCEEEEeccCChhhhhhcc
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAA-NSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~-~aDiV~l~~P~t~~t~~li~  230 (331)
                      ++.|||++|+|+|+||+.+|++++.+|++|+++|++...      .+.. +.+.++++. +||+++.|     ++.+.|+
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~-~v~~~ell~~~~DIliP~-----A~~~~I~  245 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHT-AVALEDVLSTPCDVFAPC-----AMGGVIT  245 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCE-ECCGGGGGGCCCSEEEEC-----SCSCCBC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCE-EeChHHhhcCccceecHh-----HHHhhcC
Confidence            689999999999999999999999999999999876431      1222 336788888 89999853     5888999


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          231 REVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      .+.++.|| ..+++|.+++.+.+++| .++|+++.+.
T Consensus       246 ~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl  280 (355)
T 1c1d_A          246 TEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL  280 (355)
T ss_dssp             HHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred             HHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence            99999998 68999999999999888 6999999885

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.22  E-value=2.6e-11  Score=114.00  Aligned_cols=114  Identities=10%  Similarity=0.054  Sum_probs=92.2

Q ss_pred             CceEEEEecChHHHHHHHHHhhCC-CEEEEECCCCC-------C------CCccccC-CHHhhhcCCCEEEEeccCChhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFG-CNVLYNSRSKK-------P------VPYAFYS-NVCELAANSDALIICCALTDQT  225 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~-------~------~~~~~~~-~l~ell~~aDiV~l~~P~t~~t  225 (331)
                      .++|||||+|.||..+|+.|...| ++|++||+++.       .      .+.  .. ++.+++++||+|++|+|.....
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~~~  101 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAATK  101 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGGHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHHHH
Confidence            368999999999999999999999 99999999862       1      122  45 7889999999999999977666


Q ss_pred             hhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCC
Q 020073          226 RRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEP  278 (331)
Q Consensus       226 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP  278 (331)
                      ..+  .+....+++|.++||+++......+.+.+.+.+..+....--|+.++|
T Consensus       102 ~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~  152 (317)
T 4ezb_A          102 AVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVP  152 (317)
T ss_dssp             HHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCST
T ss_pred             HHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCch
Confidence            544  667788999999999999999999999999988766433223565433

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.19  E-value=6.6e-11  Score=110.19  Aligned_cols=135  Identities=19%  Similarity=0.146  Sum_probs=91.2

Q ss_pred             HHHHHHcCCcccCCCCCCCccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEE
Q 020073          138 ADRFLRQGLWSKIGDYPLGSKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALI  216 (331)
Q Consensus       138 ~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~  216 (331)
                      +...++++.|...  .+     ..++|+||| +|.||+.+|+.|+..|++|.+++++..       .++.+++++||+|+
T Consensus         5 ~~~~~~~~~~~~~--~~-----~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~-------~~~~~~~~~aDvVi   70 (298)
T 2pv7_A            5 SYANENQFGFKTI--NS-----DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW-------AVAESILANADVVI   70 (298)
T ss_dssp             --------CCCCS--CT-----TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG-------GGHHHHHTTCSEEE
T ss_pred             HHhhhhccCcccc--CC-----CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc-------cCHHHHhcCCCEEE
Confidence            3445566778532  11     246899999 999999999999999999999998653       35778899999999


Q ss_pred             EeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCC--CCCccccCCceEEcC
Q 020073          217 ICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPY--VPKELLELDNVVLQP  294 (331)
Q Consensus       217 l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~--~~~~L~~~~nvilTP  294 (331)
                      +|+|.. .+..++ ++....++++++++++++.+....+++.+.+.   .     ++....|.  +..+++...++++||
T Consensus        71 lavp~~-~~~~vl-~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~~---~-----~~v~~hP~~g~~~~~~~g~~~~l~~  140 (298)
T 2pv7_A           71 VSVPIN-LTLETI-ERLKPYLTENMLLADLTSVKREPLAKMLEVHT---G-----AVLGLHPMFGADIASMAKQVVVRCD  140 (298)
T ss_dssp             ECSCGG-GHHHHH-HHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS---S-----EEEEEEECSCTTCSCCTTCEEEEEE
T ss_pred             EeCCHH-HHHHHH-HHHHhhcCCCcEEEECCCCCcHHHHHHHHhcC---C-----CEEeeCCCCCCCchhhcCCeEEEec
Confidence            999965 467776 34556789999999998876544455544431   1     22222332  112466666899999


Q ss_pred             CC
Q 020073          295 HR  296 (331)
Q Consensus       295 H~  296 (331)
                      |-
T Consensus       141 ~~  142 (298)
T 2pv7_A          141 GR  142 (298)
T ss_dssp             EE
T ss_pred             CC
Confidence            75

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.19  E-value=4e-11  Score=109.61  Aligned_cols=173  Identities=16%  Similarity=0.117  Sum_probs=118.8

Q ss_pred             cHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHH
Q 020073           50 SLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLI  129 (331)
Q Consensus        50 ~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L  129 (331)
                      .+.+.+......++++.+  +.++.++++..++++.-++....|+|.++.    +.|-.    .|.+.+.     .+++.
T Consensus        42 ~l~~~i~~l~~~~~G~~v--t~P~k~~i~~~~~~l~~~a~~~gavn~i~~----~~g~~----~g~ntd~-----~g~~~  106 (263)
T 2d5c_A           42 ALPGRLKEVRRAFRGVNL--TLPLKEAALAHLDWVSPEAQRIGAVNTVLQ----VEGRL----FGFNTDA-----PGFLE  106 (263)
T ss_dssp             GHHHHHHHHHHHCSEEEE--CTTCTTGGGGGCSEECHHHHHHTCCCEEEE----ETTEE----EEECCHH-----HHHHH
T ss_pred             HHHHHHHhccccCceEEE--cccCHHHHHHHHHHHhHHHHHhCCCCcEEc----cCCeE----EEeCCCH-----HHHHH
Confidence            344444332222444444  347888889999999999999999999875    34422    2334433     23333


Q ss_pred             HHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCcccc
Q 020073          130 DVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAFY  202 (331)
Q Consensus       130 ~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~~  202 (331)
                      ++.|          .           +.+++| +++|||+|.||+.+|+.|...|++|.+++|+.++       .+.. .
T Consensus       107 ~l~~----------~-----------~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~  163 (263)
T 2d5c_A          107 ALKA----------G-----------GIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-A  163 (263)
T ss_dssp             HHHH----------T-----------TCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-E
T ss_pred             HHHH----------h-----------CCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-h
Confidence            3321          1           225789 9999999999999999999999999999998643       1112 4


Q ss_pred             CCHHhhhcCCCEEEEeccCCh--hhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 020073          203 SNVCELAANSDALIICCALTD--QTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       203 ~~l~ell~~aDiV~l~~P~t~--~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i  266 (331)
                      .+++++ +++|+|++|+|...  .+...+.   .+.+++|+++++++.+.. +. .+.+++++..+
T Consensus       164 ~~~~~~-~~~Divi~~tp~~~~~~~~~~l~---~~~l~~g~~viD~~~~p~-~t-~l~~~a~~~g~  223 (263)
T 2d5c_A          164 VPLEKA-REARLLVNATRVGLEDPSASPLP---AELFPEEGAAVDLVYRPL-WT-RFLREAKAKGL  223 (263)
T ss_dssp             CCGGGG-GGCSEEEECSSTTTTCTTCCSSC---GGGSCSSSEEEESCCSSS-SC-HHHHHHHHTTC
T ss_pred             hhHhhc-cCCCEEEEccCCCCCCCCCCCCC---HHHcCCCCEEEEeecCCc-cc-HHHHHHHHCcC
Confidence            577888 99999999999773  3334454   456899999999998754 33 47777776544

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.16  E-value=7.8e-11  Score=108.56  Aligned_cols=174  Identities=16%  Similarity=0.206  Sum_probs=116.3

Q ss_pred             ccHHHHHHhhc-CCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHH
Q 020073           49 LSLEQFLISHA-HSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGL  127 (331)
Q Consensus        49 ~~~~~~l~~~~-~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l  127 (331)
                      +.+.+.+.... .+++++.+.  .+..++++..++.+.-.+....++|.++.    +.|-.+    |.|.+..     ++
T Consensus        52 ~~l~~~i~~l~~~~~~G~nvt--iP~k~~i~~~ld~l~~~A~~~gavnti~~----~~g~~~----g~nTd~~-----G~  116 (275)
T 2hk9_A           52 EELKKAFEGFKALKVKGINVT--VPFKEEIIPLLDYVEDTAKEIGAVNTVKF----ENGKAY----GYNTDWI-----GF  116 (275)
T ss_dssp             GGHHHHHHHHHHHTCCEEEEC--TTSTTTTGGGCSEECHHHHHHTCCCEEEE----ETTEEE----EECCHHH-----HH
T ss_pred             HHHHHHHHHHHhCCCCEEEEC--ccCHHHHHHHHHHhhHHHHHhCCcceEEe----eCCEEE----eecCCHH-----HH
Confidence            34445543321 256677664  46777888888888888888888888764    345222    3344332     33


Q ss_pred             HHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCcc
Q 020073          128 LIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYA  200 (331)
Q Consensus       128 ~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~  200 (331)
                      +.++.+          .           +.++.|++++|||+|.+|+++|+.|...|++|.+++|+.++       .+..
T Consensus       117 ~~~l~~----------~-----------~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~  175 (275)
T 2hk9_A          117 LKSLKS----------L-----------IPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLE  175 (275)
T ss_dssp             HHHHHH----------H-----------CTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEE
T ss_pred             HHHHHH----------h-----------CCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCe
Confidence            333321          1           12477899999999999999999999999999999998643       1222


Q ss_pred             ccCCHHhhhcCCCEEEEeccCChh--hhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073          201 FYSNVCELAANSDALIICCALTDQ--TRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGE  265 (331)
Q Consensus       201 ~~~~l~ell~~aDiV~l~~P~t~~--t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~  265 (331)
                      ...++.++++++|+|++|+|....  +...++   ++.+++|.++++++.   . ...+.+..++..
T Consensus       176 ~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i~---~~~l~~g~~viDv~~---~-~t~ll~~a~~~g  235 (275)
T 2hk9_A          176 VVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFN---YDLIKKDHVVVDIIY---K-ETKLLKKAKEKG  235 (275)
T ss_dssp             ECSCGGGTGGGCSEEEECSSTTSSTTCCCSSC---GGGCCTTSEEEESSS---S-CCHHHHHHHHTT
T ss_pred             eehhHHhhhcCCCEEEEeCCCCCCCCCCCCCC---HHHcCCCCEEEEcCC---C-hHHHHHHHHHCc
Confidence            234788899999999999997642  223453   456899999999988   2 233455444433

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.15  E-value=7.8e-11  Score=116.79  Aligned_cols=115  Identities=17%  Similarity=0.192  Sum_probs=95.8

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C---C--ccccCCHHhhhc---CCCEEEEeccCChhhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V---P--YAFYSNVCELAA---NSDALIICCALTDQTR  226 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~---~--~~~~~~l~ell~---~aDiV~l~~P~t~~t~  226 (331)
                      .++|||||+|.||+.+|+.|...|++|.+|||+++.      .   +  .....+++++++   ++|+|++++|..+.++
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   83 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD   83 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence            468999999999999999999999999999998754      1   1  112468888876   5999999999888888


Q ss_pred             hhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCC
Q 020073          227 RMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFEN  276 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~  276 (331)
                      .++ .+....|++|.++||++++...+...+.+.+.+..+.....-|+..
T Consensus        84 ~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg  132 (484)
T 4gwg_A           84 DFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGG  132 (484)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESH
T ss_pred             HHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCC
Confidence            887 6778889999999999999999999999999988776554445443

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.15  E-value=6.3e-11  Score=113.72  Aligned_cols=210  Identities=11%  Similarity=0.109  Sum_probs=124.5

Q ss_pred             CCchHHHHHHhccCcEEEeccCC----ccHHHHHHhhc-----CCeeEEEEeCCCCCCHHHHhcCC-CceEEEEccCCCC
Q 020073           26 PLTLFGDKFISRSFQLLKAYESS----LSLEQFLISHA-----HSIEAILCSGDSPVTLDILRLLP-KLRLVVTASAGVN   95 (331)
Q Consensus        26 ~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~l~~~~-----~~~d~ii~~~~~~i~~~~l~~~p-~Lk~I~~~~~G~d   95 (331)
                      ..|+...++.+..++++.-....    -+.+++...-+     -.+|+|+.-.  ..+.+-++.++ +-.++...-...|
T Consensus        40 ltP~~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~adiIlkVk--~p~~~e~~~l~~g~~l~~~lh~~~~  117 (381)
T 3p2y_A           40 LVPKVVEKLSARGLEVVVESAAGAGALFSDADYERAGATIGDPWPADVVVKVN--PPTSDEISQLKPGSVLIGFLAPRTQ  117 (381)
T ss_dssp             SCHHHHHHHHHTTCEEEECTTTTGGGTCCHHHHHHTTCEESCCTTSSEEECSS--CCCHHHHTTSCTTCEEEECCCTTTC
T ss_pred             CCHHHHHHHHhCCCEEEEeCCCCccCCCChHHHHHCCCEEeeeecCCEEEEeC--CCChhHHhhccCCCEEEEEeccccC
Confidence            45677777234556654322211    13455543211     0256666422  34455566664 5455554444444


Q ss_pred             CCChhHHhhCCcEEEe---CCCCC-h------HHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEE
Q 020073           96 HIHMPECRRRGIAVAN---AGSIF-S------DDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVG  165 (331)
Q Consensus        96 ~id~~~~~~~gI~v~n---~~~~~-~------~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vg  165 (331)
                      .=-++.+.++||...-   .|... +      .++||.+=.+      -+......  -++.... -..-...+.+++|+
T Consensus       118 ~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAGy~------Av~~aa~~--l~~~~~~-l~~~~~~v~~~kV~  188 (381)
T 3p2y_A          118 PELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAGYK------AVLLGASL--STRFVPM-LTTAAGTVKPASAL  188 (381)
T ss_dssp             HHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHHHH------HHHHHHHH--CSSCSSC-EECSSCEECCCEEE
T ss_pred             HHHHHHHHHCCCeEEEeeccccccccccceeecchhHHHHHH------HHHHHHHH--hhhhhhh-hhcccCCcCCCEEE
Confidence            3345778889998854   33211 1      2333332211      11111111  1111100 00001257899999


Q ss_pred             EEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccc-------------------------cCCHHhhhcCCCE
Q 020073          166 IVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAF-------------------------YSNVCELAANSDA  214 (331)
Q Consensus       166 IiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~-------------------------~~~l~ell~~aDi  214 (331)
                      |||+|.||..+|+.++++|++|+++|+++..      .+..+                         ..++.++++++|+
T Consensus       189 ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~aDI  268 (381)
T 3p2y_A          189 VLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAITKFDI  268 (381)
T ss_dssp             EESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHTTCSE
T ss_pred             EECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHhcCCE
Confidence            9999999999999999999999999998754      11111                         1257789999999


Q ss_pred             EEEec--cCChhhhhhccHHHHhcCCCCcEEEEcC
Q 020073          215 LIICC--ALTDQTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       215 V~l~~--P~t~~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      |+.++  |.. .+..+++++.++.||+|+++||+|
T Consensus       269 VI~tv~iPg~-~ap~Lvt~emv~~MkpGsVIVDvA  302 (381)
T 3p2y_A          269 VITTALVPGR-PAPRLVTAAAATGMQPGSVVVDLA  302 (381)
T ss_dssp             EEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETT
T ss_pred             EEECCCCCCc-ccceeecHHHHhcCCCCcEEEEEe
Confidence            99886  542 356789999999999999999998

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.14  E-value=8.3e-11  Score=108.52  Aligned_cols=136  Identities=18%  Similarity=0.164  Sum_probs=97.2

Q ss_pred             CceEEEEecChHHHHHHHHHhhC--CCEEEEECCCCCC------CCc--cccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAF--GCNVLYNSRSKKP------VPY--AFYSNVCELAANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~~~~~~~------~~~--~~~~~l~ell~~aDiV~l~~P~t~~t~~li~  230 (331)
                      .++|||||+|.||+.+|+.|...  |.+|+++++++..      .+.  ....+++++++++|+|++|+|... ...++ 
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~-~~~v~-   83 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKK-TIDFI-   83 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHH-HHHHH-
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHH-HHHHH-
Confidence            36899999999999999999866  6899999987643      122  234578888999999999999553 35565 


Q ss_pred             HHHHhc-CCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEee---cCCC---CCCCC-CccccCCceEEcCCCCCCc
Q 020073          231 REVMLA-LGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLD---VFEN---EPYVP-KELLELDNVVLQPHRAVFT  300 (331)
Q Consensus       231 ~~~l~~-mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lD---V~~~---EP~~~-~~L~~~~nvilTPH~a~~t  300 (331)
                      .+.... ++++.++++++.+.....+.+.+.+.+..+.  .++   ++..   .|... .+++...+++++||.++..
T Consensus        84 ~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~--~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~~  159 (290)
T 3b1f_A           84 KILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQ--FVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTKP  159 (290)
T ss_dssp             HHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCE--EEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCCT
T ss_pred             HHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCE--EEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCCH
Confidence            345566 8999999999988776667888887652222  122   2222   23222 3678888899999976643

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.14  E-value=9.2e-11  Score=113.42  Aligned_cols=213  Identities=15%  Similarity=0.161  Sum_probs=126.0

Q ss_pred             CCchHHHHHHhccCcEEEeccCC----ccHHHHHHh--------hcCCeeEEEEeCCCCCCHHHHhcC-CCceEEEEccC
Q 020073           26 PLTLFGDKFISRSFQLLKAYESS----LSLEQFLIS--------HAHSIEAILCSGDSPVTLDILRLL-PKLRLVVTASA   92 (331)
Q Consensus        26 ~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~l~~--------~~~~~d~ii~~~~~~i~~~~l~~~-p~Lk~I~~~~~   92 (331)
                      ..|+...++.+..++++.-....    -+.+++...        .+.++|+|+.-..  .+++-++.+ |.-.++...-.
T Consensus        43 ltP~~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~~~~adiIlkVk~--p~~~e~~~l~~g~~l~~~lh~  120 (405)
T 4dio_A           43 GSVESVKKLKSLGFDVVVEAGAGLGSRIPDQEYEKAGARVGTAADAKTADVILKVRR--PSAQEISGYRSGAVVIAIMDP  120 (405)
T ss_dssp             CCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEECGGGGGGCSEEEEEEC--CCTTTGGGSCTTCEEEEECCC
T ss_pred             CCHHHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHcCCEEchHHhhccCCEEEEeCC--CChhHHhhcCCCcEEEEEecc
Confidence            45677767345556654322211    134444321        1235677775321  223334555 35555555444


Q ss_pred             CCCCCChhHHhhCCcEEEe---CCCCC-h------HHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCC--CccCC
Q 020073           93 GVNHIHMPECRRRGIAVAN---AGSIF-S------DDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPL--GSKLG  160 (331)
Q Consensus        93 G~d~id~~~~~~~gI~v~n---~~~~~-~------~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~--~~~l~  160 (331)
                      .-|.=-++.+.++||...-   .|... +      .++||.+=.      +-+......     +.+.-...+  ...+.
T Consensus       121 ~~~~~l~~~l~~~~it~ia~E~i~r~~ra~~l~~ls~~s~iAGy------~Av~~aa~~-----l~~~~~~l~t~~g~v~  189 (405)
T 4dio_A          121 YGNEEAISAMAGAGLTTFAMELMPRITRAQSMDVLSSQANLAGY------QAVIDAAYE-----YDRALPMMMTAAGTVP  189 (405)
T ss_dssp             TTCHHHHHHHHHTTCEEEEGGGSCCSGGGGGGCHHHHHHHHHHH------HHHHHHHHH-----CSSCSSCEEETTEEEC
T ss_pred             ccCHHHHHHHHHCCCeEEEeeccccccccCccceecchhHHHHH------HHHHHHHHH-----hHhhhchhhccCCCcC
Confidence            3343345778889988854   33211 1      233333221      111111111     111100001  12478


Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc-----------------c------------cCCH
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA-----------------F------------YSNV  205 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~-----------------~------------~~~l  205 (331)
                      +.+|+|+|+|.||..+|+.++++|++|+++|+++..      .+..                 +            ..++
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l  269 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALV  269 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHH
Confidence            999999999999999999999999999999998753      1111                 0            1257


Q ss_pred             HhhhcCCCEEEEec--cCChhhhhhccHHHHhcCCCCcEEEEcC--CCCcc
Q 020073          206 CELAANSDALIICC--ALTDQTRRMINREVMLALGKEGIIVNVG--RGAVI  252 (331)
Q Consensus       206 ~ell~~aDiV~l~~--P~t~~t~~li~~~~l~~mk~ga~lIn~s--rg~~v  252 (331)
                      .++++++|+|+.++  |.. ....+++++.++.||+|+++||+|  +|+.+
T Consensus       270 ~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~  319 (405)
T 4dio_A          270 AEHIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERGGNI  319 (405)
T ss_dssp             HHHHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGTCSB
T ss_pred             HHHhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCCCCc
Confidence            88999999999885  533 457789999999999999999998  55543

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.13  E-value=3e-11  Score=114.66  Aligned_cols=130  Identities=22%  Similarity=0.216  Sum_probs=93.4

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~  230 (331)
                      .+.+++|+|||+|.||+++|+.|+..|++|++++++...       .+.... ++.+++++||+|++|+|... ...++.
T Consensus        13 ~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~~-~~~v~~   90 (338)
T 1np3_A           13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEF-QGRLYK   90 (338)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHH-HHHHHH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcHH-HHHHHH
Confidence            578899999999999999999999999999999987643       233323 78899999999999999654 366665


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCC----cccc---CCceEEcCCCCC
Q 020073          231 REVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPK----ELLE---LDNVVLQPHRAV  298 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~----~L~~---~~nvilTPH~a~  298 (331)
                      ++....+++|+++++++ |  +..  ..+.+.    ...++||+...|..+.    .++.   -.++++|||...
T Consensus        91 ~~i~~~l~~~~ivi~~~-g--v~~--~~~~~~----~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~~  156 (338)
T 1np3_A           91 EEIEPNLKKGATLAFAH-G--FSI--HYNQVV----PRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDA  156 (338)
T ss_dssp             HHTGGGCCTTCEEEESC-C--HHH--HTTSSC----CCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEECS
T ss_pred             HHHHhhCCCCCEEEEcC-C--chh--HHHhhc----CCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCCC
Confidence            45666799999999874 3  222  111111    1334567666675443    2454   678889998643

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.10  E-value=3.2e-10  Score=111.79  Aligned_cols=143  Identities=17%  Similarity=0.228  Sum_probs=98.8

Q ss_pred             EEccCCCCCCC-hhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEE
Q 020073           88 VTASAGVNHIH-MPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGI  166 (331)
Q Consensus        88 ~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgI  166 (331)
                      =-+++|+..+- ........|+|.|+.+....+.-+...+.    ..       .+..+-|..     .+.++.|++++|
T Consensus       207 EeTttGv~rL~~~~~~g~L~iPvinvnDs~tK~~fDn~yGt----~~-------sl~dgi~r~-----tg~~L~GKtVvV  270 (488)
T 3ond_A          207 EETTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGC----RH-------SLPDGLMRA-----TDVMIAGKVAVV  270 (488)
T ss_dssp             ECSHHHHHHHHHHHHTTCCCSCEEECTTSHHHHTTHHHHHH----HH-------HHHHHHHHH-----HCCCCTTCEEEE
T ss_pred             ecccccHHHHHHHHHcCCCCCceecccchhhhhHhhhhccc----cH-------HHHHHHHHH-----cCCcccCCEEEE
Confidence            34567776552 12223467999999775444322211111    11       111111111     134589999999


Q ss_pred             EecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCc
Q 020073          167 VGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEG  241 (331)
Q Consensus       167 iG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga  241 (331)
                      +|+|.||+.+|++|+++|++|+++++++..     .......++++++..+|+|+.+.    .+.++++.+.++.||+++
T Consensus       271 tGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi~at----G~~~vl~~e~l~~mk~ga  346 (488)
T 3ond_A          271 AGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTT----GNKDIIMLDHMKKMKNNA  346 (488)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEEECS----SCSCSBCHHHHTTSCTTE
T ss_pred             ECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEEeCC----CChhhhhHHHHHhcCCCe
Confidence            999999999999999999999999987543     11123457899999999999763    356789999999999999


Q ss_pred             EEEEcCCCC
Q 020073          242 IIVNVGRGA  250 (331)
Q Consensus       242 ~lIn~srg~  250 (331)
                      +++|++++.
T Consensus       347 iVvNaG~~~  355 (488)
T 3ond_A          347 IVCNIGHFD  355 (488)
T ss_dssp             EEEESSSTT
T ss_pred             EEEEcCCCC
Confidence            999999983

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.09  E-value=1.5e-10  Score=114.87  Aligned_cols=108  Identities=20%  Similarity=0.272  Sum_probs=90.5

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C----CccccCCHHhhhcC---CCEEEEeccCChhh
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V----PYAFYSNVCELAAN---SDALIICCALTDQT  225 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~----~~~~~~~l~ell~~---aDiV~l~~P~t~~t  225 (331)
                      ...++|||||+|.||+.+|+.|...|++|.+|+|+++.      .    +.....++.++++.   +|+|++++|....+
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   92 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGT   92 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHH
Confidence            45678999999999999999999999999999998654      1    33345688898887   99999999988888


Q ss_pred             hhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          226 RRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       226 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      +.++ .+....+++|.++||++.|...+...+.+.+.+..+.
T Consensus        93 ~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~  133 (480)
T 2zyd_A           93 DAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN  133 (480)
T ss_dssp             HHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Confidence            8888 4667789999999999999988888898989876554

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.08  E-value=9.2e-11  Score=108.52  Aligned_cols=105  Identities=16%  Similarity=0.271  Sum_probs=87.2

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc--HHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN--REV  233 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~--~~~  233 (331)
                      ++|+|||+|.||+.+|+.|...|++|.+++++++.      .+.....+++++++++|+|++|+|....++.++.  .+.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l   85 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   85 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence            48999999999999999999999999999987653      2334456888999999999999997777777663  345


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i  266 (331)
                      .+.+++|.++|+++.|...+.+.+.+.+....+
T Consensus        86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~  118 (299)
T 1vpd_A           86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGV  118 (299)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            567899999999999988778889999887544

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.08  E-value=1.3e-10  Score=110.50  Aligned_cols=134  Identities=12%  Similarity=0.116  Sum_probs=91.6

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhc----CCCEEEEeccCChhhhhhcc
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAA----NSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~----~aDiV~l~~P~t~~t~~li~  230 (331)
                      -++|||||+|.||+.+|+.|+..|++|++||+++..      .+.....++.++++    ++|+|++|+|. ..+..++ 
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl-   85 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLL-   85 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHH-
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHH-
Confidence            357999999999999999999999999999998654      23333467887776    47999999994 4677776 


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCC-C---CCccccCCceEEcCCCCC
Q 020073          231 REVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPY-V---PKELLELDNVVLQPHRAV  298 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~-~---~~~L~~~~nvilTPH~a~  298 (331)
                      + .+..++++++++|++..+.-..+++.+.+...+.-+ +-=++..|-. +   ...|+...++++||+-+.
T Consensus        86 ~-~l~~~~~~~iv~Dv~Svk~~i~~~~~~~~~~~~~v~-~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~  155 (341)
T 3ktd_A           86 D-AVHTHAPNNGFTDVVSVKTAVYDAVKARNMQHRYVG-SHPMAGTANSGWSASMDGLFKRAVWVVTFDQLF  155 (341)
T ss_dssp             H-HHHHHCTTCCEEECCSCSHHHHHHHHHTTCGGGEEC-EEECCSCC-CCGGGCCSSTTTTCEEEECCGGGT
T ss_pred             H-HHHccCCCCEEEEcCCCChHHHHHHHHhCCCCcEec-CCccccccccchhhhhhHHhcCCeEEEEeCCCC
Confidence            2 344459999999998776533344444332111111 1234444411 1   135888889999998543

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.07  E-value=2.8e-10  Score=104.90  Aligned_cols=104  Identities=14%  Similarity=0.148  Sum_probs=85.4

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH--HH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINR--EV  233 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~--~~  233 (331)
                      ++|+|||+|.||+.+|+.|...|++|.+++ ++..      .+.....+++++++++|+|++|+|....+..++..  +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   82 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC   82 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence            489999999999999999999999999999 6654      23334568899999999999999977767766632  44


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i  266 (331)
                      ...+++|.++|+++.|...+.+.+.+.+.+..+
T Consensus        83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~  115 (295)
T 1yb4_A           83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEMGA  115 (295)
T ss_dssp             TTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            566899999999999988888889999887443

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.06  E-value=2.4e-10  Score=105.83  Aligned_cols=105  Identities=20%  Similarity=0.214  Sum_probs=87.3

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc--HHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN--REV  233 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~--~~~  233 (331)
                      ++|+|||+|.||+.+|+.|...|++|.++++++..      .+.....+++++++++|+|++|+|....++.++.  .+.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   84 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV   84 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence            58999999999999999999999999999987643      2333456889999999999999998777777774  355


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i  266 (331)
                      ...+++|.++|+++.|...+.+.+.+.+.+..+
T Consensus        85 ~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~  117 (301)
T 3cky_A           85 LSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGI  117 (301)
T ss_dssp             HHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            667899999999999887778889888887544

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.03  E-value=2.6e-10  Score=105.35  Aligned_cols=102  Identities=17%  Similarity=0.242  Sum_probs=82.5

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH--HHH
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINR--EVM  234 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~--~~l  234 (331)
                      +|+|||+|.||+.+|+.|...|++|++++|+++.      .+.....+++++++++|+|++|+|....++.++..  ..+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~~   81 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGIL   81 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSGG
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhHH
Confidence            6999999999999999999999999999998654      23334568899999999999999988777776643  245


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRG  264 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~  264 (331)
                      +.+++|.++|+++....-+.+.+.+.+.+.
T Consensus        82 ~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~  111 (296)
T 2gf2_A           82 KKVKKGSLLIDSSTIDPAVSKELAKEVEKM  111 (296)
T ss_dssp             GTCCTTCEEEECSCCCHHHHHHHHHHHHHT
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            568999999998877776667777777653

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.02  E-value=2.4e-09  Score=97.99  Aligned_cols=131  Identities=17%  Similarity=0.232  Sum_probs=92.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCc--cccCCHHhhhcCCCEEEEeccCChhhhhhccHHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPY--AFYSNVCELAANSDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~--~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      ++|+|||+|.||+.+|+.|...|++|++++++++.      .+.  ....+++++ +++|+|++|+|. ..+..++ .+.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~-~~~~~~~-~~l   77 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPI-QLILPTL-EKL   77 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCH-HHHHHHH-HHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCH-HHHHHHH-HHH
Confidence            37999999999999999999999999999987643      122  124578888 999999999994 4556666 345


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCC---CCCC-CccccCCceEEcCCCCC
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENE---PYVP-KELLELDNVVLQPHRAV  298 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~E---P~~~-~~L~~~~nvilTPH~a~  298 (331)
                      ...+++++++|+++..+....+.+.+.+.  ++-+. .-++..+   |... ..++..+.++++|+-++
T Consensus        78 ~~~~~~~~~vv~~~~~~~~~~~~~~~~~~--~~~~~-~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~  143 (279)
T 2f1k_A           78 IPHLSPTAIVTDVASVKTAIAEPASQLWS--GFIGG-HPMAGTAAQGIDGAEENLFVNAPYVLTPTEYT  143 (279)
T ss_dssp             GGGSCTTCEEEECCSCCHHHHHHHHHHST--TCEEE-EECCCCSCSSGGGCCTTTTTTCEEEEEECTTC
T ss_pred             HhhCCCCCEEEECCCCcHHHHHHHHHHhC--CEeec-CcccCCccCCHHHHhHHHhCCCcEEEecCCCC
Confidence            56789999999998776666666665543  33222 2344222   2111 14667778899997544

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.01  E-value=5.8e-10  Score=111.05  Aligned_cols=106  Identities=16%  Similarity=0.253  Sum_probs=89.3

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----C------CccccCCHHhhhcC---CCEEEEeccCChhhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----V------PYAFYSNVCELAAN---SDALIICCALTDQTR  226 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~------~~~~~~~l~ell~~---aDiV~l~~P~t~~t~  226 (331)
                      ..+|||||+|.||+.+|+.|...|++|.+|+|++..     .      +.....++.++++.   +|+|++++|....++
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   89 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD   89 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH
Confidence            357999999999999999999999999999998754     1      22335688888877   999999999888888


Q ss_pred             hhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          227 RMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      .++ .+....+++|.++|+++.+...+...+.+.+.+..+.
T Consensus        90 ~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~  129 (497)
T 2p4q_A           90 ALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGIL  129 (497)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCc
Confidence            888 5677789999999999999888888898888875554

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.01  E-value=6.4e-10  Score=103.89  Aligned_cols=106  Identities=16%  Similarity=0.249  Sum_probs=85.9

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH--HH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINR--EV  233 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~--~~  233 (331)
                      ++|+|||+|.||+.+|+.|...|++|.+++++++.      .+.....++.++++++|+|++|+|....++.++..  ..
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~  110 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV  110 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH
Confidence            68999999999999999999999999999998654      23334567889999999999999977777766633  23


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      ++.++++.++|+++.+.....+.+.+.+....+.
T Consensus       111 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~  144 (316)
T 2uyy_A          111 LQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGR  144 (316)
T ss_dssp             GGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            4678999999999998877778888888664443

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.00  E-value=6.2e-10  Score=102.18  Aligned_cols=102  Identities=17%  Similarity=0.187  Sum_probs=83.3

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML  235 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~  235 (331)
                      ++|+|||+|.||+.+|+.|.. |++|.+++++++.      .+..... ++++++++|+|++|+|....+..++ ++..+
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~   78 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA-EALYP   78 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH-HHHTT
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH-HHHHh
Confidence            479999999999999999999 9999999998654      1122233 7788899999999999776677766 45567


Q ss_pred             cCCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 020073          236 ALGKEGIIVNVGRGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       236 ~mk~ga~lIn~srg~~vd~~al~~aL~~~~i  266 (331)
                      .+++|.++|+++.+...+.+.+.+.+.+..+
T Consensus        79 ~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~  109 (289)
T 2cvz_A           79 YLREGTYWVDATSGEPEASRRLAERLREKGV  109 (289)
T ss_dssp             TCCTTEEEEECSCCCHHHHHHHHHHHHTTTE
T ss_pred             hCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            7899999999999888888899999887543

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=98.98  E-value=2.7e-10  Score=103.04  Aligned_cols=90  Identities=18%  Similarity=0.326  Sum_probs=65.7

Q ss_pred             CCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC---------------------CCccccCCHHhhhcCCC
Q 020073          155 LGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP---------------------VPYAFYSNVCELAANSD  213 (331)
Q Consensus       155 ~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---------------------~~~~~~~~l~ell~~aD  213 (331)
                      ...++.+++|||||+|.||+.+|+.|...|++|++|+|+++.                     .+.....++.+++++||
T Consensus        13 ~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD   92 (245)
T 3dtt_A           13 ENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAE   92 (245)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCS
T ss_pred             cccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCC
Confidence            356789999999999999999999999999999999987542                     01223457889999999


Q ss_pred             EEEEeccCChhhhhhccHHH-HhcCCCCcEEEEcC
Q 020073          214 ALIICCALTDQTRRMINREV-MLALGKEGIIVNVG  247 (331)
Q Consensus       214 iV~l~~P~t~~t~~li~~~~-l~~mk~ga~lIn~s  247 (331)
                      +|++|+|...... .+. +. ...+ +|.++|+++
T Consensus        93 vVilavp~~~~~~-~~~-~i~~~~l-~g~ivi~~s  124 (245)
T 3dtt_A           93 LVVNATEGASSIA-ALT-AAGAENL-AGKILVDIA  124 (245)
T ss_dssp             EEEECSCGGGHHH-HHH-HHCHHHH-TTSEEEECC
T ss_pred             EEEEccCcHHHHH-HHH-Hhhhhhc-CCCEEEECC
Confidence            9999999765443 332 22 2234 799999999

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=98.97  E-value=7.3e-10  Score=109.71  Aligned_cols=111  Identities=18%  Similarity=0.257  Sum_probs=90.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------C---CccccCCHHhhhcC---CCEEEEeccCChhhhhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------V---PYAFYSNVCELAAN---SDALIICCALTDQTRRM  228 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~---~~~~~~~l~ell~~---aDiV~l~~P~t~~t~~l  228 (331)
                      ++|||||+|.||+.+|+.|...|++|.+|+|+++.       .   +.....+++++++.   +|+|++|+|....++.+
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v   85 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT   85 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence            57999999999999999999999999999998653       1   33345688898876   99999999988788887


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeec
Q 020073          229 INREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDV  273 (331)
Q Consensus       229 i~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV  273 (331)
                      + .+....+++|.++|+++.|...+...+.+.+.+..+.....-|
T Consensus        86 l-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv  129 (474)
T 2iz1_A           86 I-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGV  129 (474)
T ss_dssp             H-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEE
T ss_pred             H-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCC
Confidence            7 4566778999999999999888888888888775554333333

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=98.93  E-value=6.3e-10  Score=109.19  Aligned_cols=116  Identities=16%  Similarity=0.267  Sum_probs=82.3

Q ss_pred             ccCCC-ceEEEEecChHHHHHHHHHhhC------CCEEEEECCCCC-C------CCccc----cCCHHhhhcCCCEEEEe
Q 020073          157 SKLGG-KRVGIVGLGNIGLQVAKRLQAF------GCNVLYNSRSKK-P------VPYAF----YSNVCELAANSDALIIC  218 (331)
Q Consensus       157 ~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~~~~~~-~------~~~~~----~~~l~ell~~aDiV~l~  218 (331)
                      ..|+| ++|||||+|+||.++|+.|+..      |++|++..+... .      .+...    ..++.+++++||+|+++
T Consensus        49 ~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILa  128 (525)
T 3fr7_A           49 EAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLL  128 (525)
T ss_dssp             HHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEEC
T ss_pred             HHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEEC
Confidence            46899 9999999999999999999987      999876555432 2      23322    25789999999999999


Q ss_pred             ccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce-EEEeecCCCCCCCC
Q 020073          219 CALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA-GAGLDVFENEPYVP  281 (331)
Q Consensus       219 ~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~-ga~lDV~~~EP~~~  281 (331)
                      +|..... .++. +.+..||+|++ |-.+.|-      .+..++++.+. +...||+-.=|..+
T Consensus       129 VP~~~~~-eVl~-eI~p~LK~GaI-Ls~AaGf------~I~~le~~~i~~p~dv~VVrVmPNtP  183 (525)
T 3fr7_A          129 ISDAAQA-DNYE-KIFSHMKPNSI-LGLSHGF------LLGHLQSAGLDFPKNISVIAVCPKGM  183 (525)
T ss_dssp             SCHHHHH-HHHH-HHHHHSCTTCE-EEESSSH------HHHHHHHTTCCCCTTSEEEEEEESSC
T ss_pred             CChHHHH-HHHH-HHHHhcCCCCe-EEEeCCC------CHHHHhhhcccCCCCCcEEEEecCCC
Confidence            9987654 4665 68899999998 5667773      23344442221 22356665555433

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=98.93  E-value=1.5e-09  Score=107.66  Aligned_cols=111  Identities=21%  Similarity=0.297  Sum_probs=89.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CC-------ccccCCHHhhhc---CCCEEEEeccCChh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VP-------YAFYSNVCELAA---NSDALIICCALTDQ  224 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~-------~~~~~~l~ell~---~aDiV~l~~P~t~~  224 (331)
                      ++|||||+|.||+.+|+.|...|++|.+|+|+++.       .+       .....+++++++   .+|+|++|+|....
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~   81 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence            37999999999999999999999999999997643       12       233568888877   49999999998777


Q ss_pred             hhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeec
Q 020073          225 TRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDV  273 (331)
Q Consensus       225 t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV  273 (331)
                      ++.++ ++....+++|.++|+++.|...+.+.+.+.+.+..+.....-|
T Consensus        82 v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv  129 (478)
T 1pgj_A           82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGI  129 (478)
T ss_dssp             HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             HHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeec
Confidence            88877 4566778999999999999888888888988875554333333

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=98.92  E-value=2.7e-09  Score=105.88  Aligned_cols=111  Identities=17%  Similarity=0.204  Sum_probs=89.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----C------CccccCCHHhhhc---CCCEEEEeccCChhhhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----V------PYAFYSNVCELAA---NSDALIICCALTDQTRR  227 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~------~~~~~~~l~ell~---~aDiV~l~~P~t~~t~~  227 (331)
                      ++|||||+|.||+.+|+.|...|++|.+|+|+++.     .      +.....+++++++   .+|+|++++|....++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~   82 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence            47999999999999999999999999999998653     1      1223467888874   89999999998778888


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeec
Q 020073          228 MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDV  273 (331)
Q Consensus       228 li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV  273 (331)
                      ++ .+....+++|.++|+++.|...+...+.+.+.+..+.....-|
T Consensus        83 vl-~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv  127 (482)
T 2pgd_A           83 FI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGV  127 (482)
T ss_dssp             HH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCC
Confidence            77 4566778999999999999888888888888775554333333

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.44  E-value=1.4e-10  Score=102.21  Aligned_cols=89  Identities=17%  Similarity=0.230  Sum_probs=72.2

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHH
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      +.+++|+|||+|.||+.+|+.|...|++|.+++|+...     .+.. ..++.++++++|+|++++|.. .++.++   .
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~~~~g~~-~~~~~~~~~~aDvVilav~~~-~~~~v~---~   91 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAE-VLCYSEAASRSDVIVLAVHRE-HYDFLA---E   91 (201)
Confidence            67789999999999999999999999999999987642     1222 236788899999999999965 567666   2


Q ss_pred             HhcCCCCcEEEEcCCCCcc
Q 020073          234 MLALGKEGIIVNVGRGAVI  252 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~v  252 (331)
                      +..+++++++||+++|-..
T Consensus        92 l~~~~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           92 LADSLKGRVLIDVSNNQKM  110 (201)
Confidence            4557789999999999853

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.89  E-value=2.5e-09  Score=99.53  Aligned_cols=123  Identities=16%  Similarity=0.148  Sum_probs=85.6

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C-------CccccCCHHhhhcCCCEEEEeccCChhh
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V-------PYAFYSNVCELAANSDALIICCALTDQT  225 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~-------~~~~~~~l~ell~~aDiV~l~~P~t~~t  225 (331)
                      -+.|+|||||+|.||..+|+.+. .|++|++||++++.      .       ......++++ +++||+|+.|+|.+.+.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v   87 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT   87 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH
Confidence            45789999999999999999999 99999999998754      1       1223456766 89999999999999887


Q ss_pred             hhhccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCC
Q 020073          226 RRMINREVMLALGKEGIIV-NVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHR  296 (331)
Q Consensus       226 ~~li~~~~l~~mk~ga~lI-n~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~  296 (331)
                      +..+-.+ ++.+ ++++++ |+|.-+   ...+.+++. ...+..++--|.  |.     ...+-+.+.|+-
T Consensus        88 k~~l~~~-l~~~-~~~IlasntSti~---~~~~a~~~~-~~~r~~G~Hf~~--Pv-----~~~~lveiv~g~  146 (293)
T 1zej_A           88 KVEVLRE-VERL-TNAPLCSNTSVIS---VDDIAERLD-SPSRFLGVHWMN--PP-----HVMPLVEIVISR  146 (293)
T ss_dssp             HHHHHHH-HHTT-CCSCEEECCSSSC---HHHHHTTSS-CGGGEEEEEECS--ST-----TTCCEEEEEECT
T ss_pred             HHHHHHH-HhcC-CCCEEEEECCCcC---HHHHHHHhh-cccceEeEEecC--cc-----ccCCEEEEECCC
Confidence            7665333 6667 999885 777644   345544443 223345566555  32     334566677643

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.89  E-value=2.1e-09  Score=106.14  Aligned_cols=129  Identities=15%  Similarity=0.182  Sum_probs=92.8

Q ss_pred             ceEEEEecChHHHHHHHHHhhC--CCEEEEECCCCCC-----C--------------------CccccCCHHhhhcCCCE
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF--GCNVLYNSRSKKP-----V--------------------PYAFYSNVCELAANSDA  214 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~~~~~~~-----~--------------------~~~~~~~l~ell~~aDi  214 (331)
                      ++|+|||+|.||..+|..|...  |++|+++|++++.     .                    ......++.+++++||+
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv   85 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL   85 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence            5899999999999999999887  8999999987543     0                    01123567888999999


Q ss_pred             EEEeccCChhhhh-----------hc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEee---cCCCCC
Q 020073          215 LIICCALTDQTRR-----------MI--NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLD---VFENEP  278 (331)
Q Consensus       215 V~l~~P~t~~t~~-----------li--~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lD---V~~~EP  278 (331)
                      |++|+|......+           +.  -++..+.+++|+++|+.|...+-..+.+.+.+.+....  .+|   ++.+|+
T Consensus        86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~--~~d~~V~~~Pe~  163 (467)
T 2q3e_A           86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKP--NLNLQVLSNPEF  163 (467)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCT--TCEEEEEECCCC
T ss_pred             EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCC--CCCeEEEeCHHH
Confidence            9999985443322           11  13355678999999999998887788888888876421  234   355666


Q ss_pred             CCCC----ccccCCceEE
Q 020073          279 YVPK----ELLELDNVVL  292 (331)
Q Consensus       279 ~~~~----~L~~~~nvil  292 (331)
                      ..+.    .+...++|++
T Consensus       164 ~~~G~~~~d~~~~~rivv  181 (467)
T 2q3e_A          164 LAEGTAIKDLKNPDRVLI  181 (467)
T ss_dssp             CCTTSHHHHHHSCSCEEE
T ss_pred             hhcccchhhccCCCEEEE
Confidence            4332    2566677764

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.87  E-value=2e-09  Score=98.03  Aligned_cols=96  Identities=16%  Similarity=0.288  Sum_probs=76.0

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCCE-EEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhh
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRM  228 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~l  228 (331)
                      +++.+++|+|||+|.||+.+|+.+...|++ |.+++++++.       .+.....+++++++++|+|++++|.. ....+
T Consensus         6 ~~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~v   84 (266)
T 3d1l_A            6 RSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFAEL   84 (266)
T ss_dssp             -CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHHHH
T ss_pred             cCCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHHHH
Confidence            345677999999999999999999988998 8899987653       13334568889999999999999965 44555


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCccCH
Q 020073          229 INREVMLALGKEGIIVNVGRGAVIDE  254 (331)
Q Consensus       229 i~~~~l~~mk~ga~lIn~srg~~vd~  254 (331)
                      + ++....+++++++|+++.|...+.
T Consensus        85 ~-~~l~~~~~~~~ivv~~s~~~~~~~  109 (266)
T 3d1l_A           85 L-QGIVEGKREEALMVHTAGSIPMNV  109 (266)
T ss_dssp             H-HHHHTTCCTTCEEEECCTTSCGGG
T ss_pred             H-HHHHhhcCCCcEEEECCCCCchHH
Confidence            5 345566889999999999876543

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.86  E-value=6e-09  Score=91.95  Aligned_cols=79  Identities=16%  Similarity=0.298  Sum_probs=63.6

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcC
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLAL  237 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~m  237 (331)
                      ++.+++|+|||+|.||+.+|+.|...|.+|++++|+++            .+++||+|++++| +..+..++. +....+
T Consensus        16 ~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~------------~~~~aD~vi~av~-~~~~~~v~~-~l~~~~   81 (209)
T 2raf_A           16 YFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ------------ATTLGEIVIMAVP-YPALAALAK-QYATQL   81 (209)
T ss_dssp             ----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC------------CSSCCSEEEECSC-HHHHHHHHH-HTHHHH
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH------------HhccCCEEEEcCC-cHHHHHHHH-HHHHhc
Confidence            57789999999999999999999999999999998643            5678999999999 667777664 334456


Q ss_pred             CCCcEEEEcCCCCc
Q 020073          238 GKEGIIVNVGRGAV  251 (331)
Q Consensus       238 k~ga~lIn~srg~~  251 (331)
                      + ++++|++++|--
T Consensus        82 ~-~~~vi~~~~g~~   94 (209)
T 2raf_A           82 K-GKIVVDITNPLN   94 (209)
T ss_dssp             T-TSEEEECCCCBC
T ss_pred             C-CCEEEEECCCCC
Confidence            7 999999999765

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=98.86  E-value=2.5e-09  Score=97.11  Aligned_cols=96  Identities=18%  Similarity=0.210  Sum_probs=76.2

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCC--CC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK--KP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~--~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +|||||+|.||+.+|+.|...|++|+++++..  +.      .+..  .++.++++++|+|++|+|.......+  .+..
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~~   77 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAA--RRAG   77 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHH--HHHH
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHH--HHHH
Confidence            79999999999999999999999999988732  11      1222  57788899999999999977666654  4566


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRG  264 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~  264 (331)
                      +.+++  ++|+++.+...+.+.+.+.+...
T Consensus        78 ~~~~~--~vi~~s~~~~~~~~~l~~~~~~~  105 (264)
T 1i36_A           78 RHVRG--IYVDINNISPETVRMASSLIEKG  105 (264)
T ss_dssp             TTCCS--EEEECSCCCHHHHHHHHHHCSSS
T ss_pred             HhcCc--EEEEccCCCHHHHHHHHHHHhhC
Confidence            67776  99999988777778888888653

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.83  E-value=1.5e-08  Score=99.64  Aligned_cols=162  Identities=15%  Similarity=0.126  Sum_probs=103.2

Q ss_pred             CCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCC---CCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEE
Q 020073          114 SIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGD---YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYN  190 (331)
Q Consensus       114 ~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~---~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~  190 (331)
                      |.|--.|.|.+.++++..-         ...++|.....   +.....-.-++|+|||+|.||..+|..+...|++|+++
T Consensus        13 ~~~~~~~~~~~~~~~~~a~---------~~~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~   83 (460)
T 3k6j_A           13 GENLYFQGSEVRSYLMEAH---------SLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLV   83 (460)
T ss_dssp             SGGGGGCBCHHHHHHHHTT---------CCTTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccchhhhhHHHHHHHHhHH---------HhhccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence            3344455566666666522         22466864311   11111123378999999999999999999999999999


Q ss_pred             CCCCCC--------------CCc-------------cccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEE
Q 020073          191 SRSKKP--------------VPY-------------AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGII  243 (331)
Q Consensus       191 ~~~~~~--------------~~~-------------~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~l  243 (331)
                      |+++++              .+.             ....+++ .+++||+|+.|+|.+.+.+.-+-++..+.++++++|
T Consensus        84 D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIl  162 (460)
T 3k6j_A           84 VRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKSTCIF  162 (460)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEE
T ss_pred             ECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEE
Confidence            998651              110             1234664 789999999999988776654446677779999999


Q ss_pred             EEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCC
Q 020073          244 VNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPH  295 (331)
Q Consensus       244 In~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH  295 (331)
                      ++.+++  +....+.+.+.. .-+..++.-|.  |..     .++-|-+.|+
T Consensus       163 asnTSs--l~i~~ia~~~~~-p~r~iG~Hffn--Pv~-----~m~LvEIv~g  204 (460)
T 3k6j_A          163 GTNTSS--LDLNEISSVLRD-PSNLVGIHFFN--PAN-----VIRLVEIIYG  204 (460)
T ss_dssp             EECCSS--SCHHHHHTTSSS-GGGEEEEECCS--STT-----TCCEEEEECC
T ss_pred             EecCCC--hhHHHHHHhccC-CcceEEEEecc--hhh-----hCCEEEEEeC
Confidence            654444  344566655543 23446777776  321     2334556664

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.82  E-value=4.7e-09  Score=100.43  Aligned_cols=102  Identities=19%  Similarity=0.233  Sum_probs=81.6

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-C------CccccCCHHhhhc-CCCEEEEeccCChhhhhhc
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-V------PYAFYSNVCELAA-NSDALIICCALTDQTRRMI  229 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~------~~~~~~~l~ell~-~aDiV~l~~P~t~~t~~li  229 (331)
                      +|.|++|+|+|+|+||+.+|+.|..+|++|+++|++... .      +. ...+.++++. +||+++.|.     +.++|
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga-~~v~~~~ll~~~~DIvip~a-----~~~~I  243 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGA-DAVAPNAIYGVTCDIFAPCA-----LGAVL  243 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCC-EECCGGGTTTCCCSEEEECS-----CSCCB
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCC-EEEChHHHhccCCcEeeccc-----hHHHh
Confidence            589999999999999999999999999999999987543 1      22 2235667766 899999873     66788


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          230 NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       230 ~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      +.+.++.|+ ..++++.+++.+.+++ ..+.|+++.+.
T Consensus       244 ~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi~  279 (364)
T 1leh_A          244 NDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGIV  279 (364)
T ss_dssp             STTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTCE
T ss_pred             CHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCCE
Confidence            888888884 5689999999998866 55667777663

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.79  E-value=4.6e-09  Score=86.86  Aligned_cols=84  Identities=17%  Similarity=0.303  Sum_probs=68.0

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCc--cccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPY--AFYSNVCELAANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~--~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      +++++|||+|.||+.+++.|+.+|++|.+++|+...       .+.  ....++.++++++|+|+.++|..   ..++..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~---~~~~~~   97 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK---TPIVEE   97 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS---SCSBCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC---CcEeeH
Confidence            789999999999999999999999999999998654       111  23568899999999999999866   334544


Q ss_pred             HHHhcCCCCcEEEEcCCCC
Q 020073          232 EVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~srg~  250 (331)
                         +.+++|.++++++...
T Consensus        98 ---~~l~~g~~vid~~~p~  113 (144)
T 3oj0_A           98 ---RSLMPGKLFIDLGNPP  113 (144)
T ss_dssp             ---GGCCTTCEEEECCSSC
T ss_pred             ---HHcCCCCEEEEccCCc
Confidence               4478899999998754

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.79  E-value=1.5e-07  Score=89.86  Aligned_cols=178  Identities=13%  Similarity=0.085  Sum_probs=113.0

Q ss_pred             CeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCCCCChhHHhhCCcEEEeC---CCC-----ChHHHHHHHH--HHHHH
Q 020073           61 SIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANA---GSI-----FSDDAADAAV--GLLID  130 (331)
Q Consensus        61 ~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~---~~~-----~~~~vAE~al--~l~L~  130 (331)
                      ++|+|+.. ..+...+.....+++.++......++.-.++.+.+.|+...|.   |.-     .-.++++.+-  +.+++
T Consensus        66 ~ad~i~~v-ksP~~~~~~~~~~g~~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~g  144 (361)
T 1pjc_A           66 SREMVVKV-KEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFG  144 (361)
T ss_dssp             TSSEEECS-SCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEE-CCCCHHHHHhhcCCCEEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHH
Confidence            57887753 3344333333346766666655556554567788889888753   321     1245555444  33433


Q ss_pred             HHhchHHHHHHHHcCC-cccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccc--
Q 020073          131 VWRKISSADRFLRQGL-WSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAF--  201 (331)
Q Consensus       131 ~~r~~~~~~~~~~~g~-w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~--  201 (331)
                      ... +...    ..|+ +...   .. ..+.+++++|+|.|.+|+.+++.++.+|++|+++++++.+      .....  
T Consensus       145 A~n-t~~~----~~g~G~~l~---~l-~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~  215 (361)
T 1pjc_A          145 ARF-LERQ----QGGRGVLLG---GV-PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVE  215 (361)
T ss_dssp             HHH-TSGG----GTSCCCCTT---CB-TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSE
T ss_pred             HHH-Hhhc----cCCCceecc---CC-CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeE
Confidence            321 1100    1111 0000   01 2477899999999999999999999999999999998653      11111  


Q ss_pred             -----cCCHHhhhcCCCEEEEeccCCh-hhhhhccHHHHhcCCCCcEEEEcCC
Q 020073          202 -----YSNVCELAANSDALIICCALTD-QTRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       202 -----~~~l~ell~~aDiV~l~~P~t~-~t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                           ..++.+.++.+|+|+.+++... .+..++.++.++.|++|++++|++-
T Consensus       216 ~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          216 LLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             EEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             eeeCCHHHHHHHHcCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence                 1245677889999999987543 2345678889999999999999984

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.78  E-value=2.7e-08  Score=97.16  Aligned_cols=110  Identities=15%  Similarity=0.139  Sum_probs=81.6

Q ss_pred             CCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----C-------------------CccccCCHHhhhc
Q 020073          155 LGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----V-------------------PYAFYSNVCELAA  210 (331)
Q Consensus       155 ~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~-------------------~~~~~~~l~ell~  210 (331)
                      ++++..-++|+|||+|.||..+|..|.. |.+|++||++++.     .                   ......++.++++
T Consensus        30 ~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~  108 (432)
T 3pid_A           30 MGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYR  108 (432)
T ss_dssp             -----CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHT
T ss_pred             cccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHh
Confidence            4566777899999999999999999988 9999999987653     1                   1123457889999


Q ss_pred             CCCEEEEeccCChh-------hhhhc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 020073          211 NSDALIICCALTDQ-------TRRMI--NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       211 ~aDiV~l~~P~t~~-------t~~li--~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i  266 (331)
                      +||+|++|+|....       +..+.  -+...+ +++|+++|+.|.-.+-..+.+.+.+.+..+
T Consensus       109 ~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v  172 (432)
T 3pid_A          109 NADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNV  172 (432)
T ss_dssp             TCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCE
T ss_pred             CCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccE
Confidence            99999999996521       11222  144555 899999999998888788888888876544

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.72  E-value=1e-08  Score=90.75  Aligned_cols=89  Identities=19%  Similarity=0.273  Sum_probs=68.6

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHH
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      .+++|+|||+|.||+.+|+.|...|++|.+++|+.+.      .+... .++.++++++|+|++++|. .....++.   
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~-~~~~~~~~~~DvVi~av~~-~~~~~v~~---  101 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQV-TFQEEAVSSPEVIFVAVFR-EHYSSLCS---  101 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEE-EEHHHHTTSCSEEEECSCG-GGSGGGGG---
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCce-ecHHHHHhCCCEEEECCCh-HHHHHHHH---
Confidence            4578999999999999999999999999999987543      12222 2788899999999999994 45556653   


Q ss_pred             HhcCCCCcEEEEcCCCCccC
Q 020073          234 MLALGKEGIIVNVGRGAVID  253 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd  253 (331)
                      +..+.+++++|++++|.-.+
T Consensus       102 l~~~~~~~~vv~~s~g~~~~  121 (215)
T 2vns_A          102 LSDQLAGKILVDVSNPTEQE  121 (215)
T ss_dssp             GHHHHTTCEEEECCCCCHHH
T ss_pred             HHHhcCCCEEEEeCCCcccc
Confidence            33334799999999997543

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.70  E-value=4.4e-08  Score=90.94  Aligned_cols=111  Identities=15%  Similarity=0.207  Sum_probs=76.8

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-C----------------C------------------ccccCCHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-V----------------P------------------YAFYSNVC  206 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~----------------~------------------~~~~~~l~  206 (331)
                      ++|+|||+|.||..+|..+...|++|+++|++++. .                +                  .....+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~   95 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   95 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence            68999999999999999999999999999997542 0                0                  11235777


Q ss_pred             hhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCC
Q 020073          207 ELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE  275 (331)
Q Consensus       207 ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~  275 (331)
                      +.+++||+|++++|...+...-+-++..+.++++++++..+.|-  ....+.+.+.... ..++...+.
T Consensus        96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i--~~~~l~~~~~~~~-~~~g~h~~~  161 (302)
T 1f0y_A           96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANATTRQD-RFAGLHFFN  161 (302)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSSCGG-GEEEEEECS
T ss_pred             HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCC--CHHHHHHhcCCcc-cEEEEecCC
Confidence            88999999999999876544333344555678899988655553  3345555543211 224455444

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.69  E-value=5.4e-08  Score=91.36  Aligned_cols=101  Identities=18%  Similarity=0.288  Sum_probs=77.1

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCC----CEEEEECCCCC--C------CCccccCCHHhhhcCCCEEEEeccCChhhh
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFG----CNVLYNSRSKK--P------VPYAFYSNVCELAANSDALIICCALTDQTR  226 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G----~~V~~~~~~~~--~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~  226 (331)
                      ...++|+|||+|.||..+|+.|...|    .+|++++|+++  .      .+.....+..++++++|+|++|+| .....
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~   98 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIP   98 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHH
Confidence            34468999999999999999999888    78999999875  2      133334578889999999999999 55666


Q ss_pred             hhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073          227 RMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR  263 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~  263 (331)
                      .++ .+....++++.++|+++-|--  .+.+.+.+.+
T Consensus        99 ~vl-~~l~~~l~~~~ivvs~s~gi~--~~~l~~~l~~  132 (322)
T 2izz_A           99 FIL-DEIGADIEDRHIVVSCAAGVT--ISSIEKKLSA  132 (322)
T ss_dssp             HHH-HHHGGGCCTTCEEEECCTTCC--HHHHHHHHHT
T ss_pred             HHH-HHHHhhcCCCCEEEEeCCCCC--HHHHHHHHhh
Confidence            665 345556889999999976643  4556666664

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.67  E-value=2e-08  Score=92.53  Aligned_cols=86  Identities=10%  Similarity=0.220  Sum_probs=69.7

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      ++|+|||+ |.||+.+|+.|...|++|++++|+++.      .+.. ..++.++++++|+|++|+|... +..++ ++..
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~-~~~~~~~~~~aDvVi~av~~~~-~~~v~-~~l~   88 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIP-LTDGDGWIDEADVVVLALPDNI-IEKVA-EDIV   88 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCC-CCCSSGGGGTCSEEEECSCHHH-HHHHH-HHHG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCC-cCCHHHHhcCCCEEEEcCCchH-HHHHH-HHHH
Confidence            58999999 999999999999999999999987643      1221 2367788999999999999654 56666 4555


Q ss_pred             hcCCCCcEEEEcCCCC
Q 020073          235 LALGKEGIIVNVGRGA  250 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~  250 (331)
                      ..+++++++|+++.|.
T Consensus        89 ~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           89 PRVRPGTIVLILDAAA  104 (286)
T ss_dssp             GGSCTTCEEEESCSHH
T ss_pred             HhCCCCCEEEECCCCc
Confidence            6789999999988876

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.67  E-value=2e-08  Score=90.57  Aligned_cols=98  Identities=19%  Similarity=0.335  Sum_probs=74.3

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC----EEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC----NVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~----~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~  230 (331)
                      ++|+|||+|.||+.+++.|...|+    +|.+|+|+++.       .+.....++.++++++|+|++|+|. .....++ 
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~-~~~~~v~-   80 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKP-DLYASII-   80 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCT-TTHHHHC-
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCH-HHHHHHH-
Confidence            589999999999999999999998    99999998654       1334456889999999999999973 3455555 


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073          231 REVMLALGKEGIIVNVGRGAVIDENEMVRCLVR  263 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~  263 (331)
                      ++....++++.++|.+.-|-  ..+.+.+.+..
T Consensus        81 ~~l~~~l~~~~~vvs~~~gi--~~~~l~~~~~~  111 (247)
T 3gt0_A           81 NEIKEIIKNDAIIVTIAAGK--SIESTENAFNK  111 (247)
T ss_dssp             ---CCSSCTTCEEEECSCCS--CHHHHHHHHCS
T ss_pred             HHHHhhcCCCCEEEEecCCC--CHHHHHHHhCC
Confidence            44555678999999776554  34566666644

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.66  E-value=4.1e-08  Score=88.84  Aligned_cols=95  Identities=15%  Similarity=0.259  Sum_probs=73.6

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      ++|||||+|.||+.+++.|...|.+|.+++++++.       .+.....+++++++++|+|++|+| ......     .+
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~~-----v~   77 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFET-----VL   77 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHH-----HH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHHH-----HH
Confidence            48999999999999999999999999999997653       133345688999999999999999 444433     44


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRG  264 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~  264 (331)
                      ..+++|.++|+...|--  .+.+.+.+..+
T Consensus        78 ~~l~~~~~vv~~~~~~~--~~~l~~~~~~~  105 (259)
T 2ahr_A           78 KPLHFKQPIISMAAGIS--LQRLATFVGQD  105 (259)
T ss_dssp             TTSCCCSCEEECCTTCC--HHHHHHHHCTT
T ss_pred             HHhccCCEEEEeCCCCC--HHHHHHhcCCC
Confidence            55678999999976643  44576766644

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.64  E-value=9.9e-08  Score=93.30  Aligned_cols=100  Identities=21%  Similarity=0.238  Sum_probs=76.7

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CC---------------------ccccCCHHhhhcCCCEEE
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VP---------------------YAFYSNVCELAANSDALI  216 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~---------------------~~~~~~l~ell~~aDiV~  216 (331)
                      +|+|||+|.||..+|..|...|++|+++|++++.     .+                     .....++++++++||+|+
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvvi   81 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSF   81 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEEE
Confidence            7999999999999999999999999999987543     10                     122457788899999999


Q ss_pred             EeccCChh---------hhhhccHHHHhcCCC---CcEEEEcCCCCccC-HHHHHHHHHh
Q 020073          217 ICCALTDQ---------TRRMINREVMLALGK---EGIIVNVGRGAVID-ENEMVRCLVR  263 (331)
Q Consensus       217 l~~P~t~~---------t~~li~~~~l~~mk~---ga~lIn~srg~~vd-~~al~~aL~~  263 (331)
                      +|+|....         ....+ ++....+++   +.++|+.|...+-. .+.+.+.+.+
T Consensus        82 iaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           82 ICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             ECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             EEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            99986544         34433 444456788   99999998766655 6677777776

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.63  E-value=1.1e-07  Score=78.52  Aligned_cols=102  Identities=19%  Similarity=0.270  Sum_probs=79.5

Q ss_pred             CCCceEEEEec----ChHHHHHHHHHhhCCCEEEEECCCCCC-CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHH
Q 020073          159 LGGKRVGIVGL----GNIGLQVAKRLQAFGCNVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       159 l~g~~vgIiG~----G~IG~~~A~~l~~~G~~V~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      .+-++|+|||+    |.+|..+++.|...|++|+.++++.+. .+...+.+++++....|++++++| .+....++. +.
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~~-~~   89 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVAK-EA   89 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSC-HHHHHHHHH-HH
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHHH-HH
Confidence            34578999999    999999999999999998888887654 455567899999999999999999 567777764 34


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      .+ ...++++++++.    ..+++.++.++..+.
T Consensus        90 ~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~  118 (138)
T 1y81_A           90 VE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE  118 (138)
T ss_dssp             HH-TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred             HH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE
Confidence            44 566777777643    257778888877775

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.62  E-value=1.2e-07  Score=85.77  Aligned_cols=99  Identities=20%  Similarity=0.376  Sum_probs=71.0

Q ss_pred             CceEEEEecChHHHHHHHHHhhCC----CEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhc
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFG----CNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLA  236 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G----~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~  236 (331)
                      .++|+|||+|.||+.+|+.|...|    .+|.+|+|+++..+.....++.++++++|+|++|+| ......++. +....
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~-~~~~~~v~~-~l~~~   81 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKNTTLNYMSSNEELARHCDIIVCAVK-PDIAGSVLN-NIKPY   81 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCSSSSEECSCHHHHHHHCSEEEECSC-TTTHHHHHH-HSGGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcccCceEEeCCHHHHHhcCCEEEEEeC-HHHHHHHHH-HHHHh
Confidence            458999999999999999998888    689999998764333345678889999999999999 445555553 33445


Q ss_pred             CCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073          237 LGKEGIIVNVGRGAVIDENEMVRCLVRG  264 (331)
Q Consensus       237 mk~ga~lIn~srg~~vd~~al~~aL~~~  264 (331)
                      ++ +..+|....|  ++.+.+.+.+..+
T Consensus        82 l~-~~~vv~~~~g--i~~~~l~~~~~~~  106 (262)
T 2rcy_A           82 LS-SKLLISICGG--LNIGKLEEMVGSE  106 (262)
T ss_dssp             CT-TCEEEECCSS--CCHHHHHHHHCTT
T ss_pred             cC-CCEEEEECCC--CCHHHHHHHhCCC
Confidence            64 4555555444  3335666666553

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.61  E-value=7.1e-08  Score=88.90  Aligned_cols=99  Identities=15%  Similarity=0.186  Sum_probs=76.8

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCC---EEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGC---NVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~---~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~  230 (331)
                      .++|||||+|+||+.+++.+...|+   +|.+++|+++.       .+.....+..++++++|+|++++|. .....++ 
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl-   80 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVC-   80 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHH-
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHH-
Confidence            4689999999999999999999898   89999998754       1444456889999999999999974 4455555 


Q ss_pred             HHHHhc-CCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073          231 REVMLA-LGKEGIIVNVGRGAVIDENEMVRCLVR  263 (331)
Q Consensus       231 ~~~l~~-mk~ga~lIn~srg~~vd~~al~~aL~~  263 (331)
                      ++.-.. ++++.++|+++-|-  ..+.+.+.+..
T Consensus        81 ~~l~~~~l~~~~iiiS~~agi--~~~~l~~~l~~  112 (280)
T 3tri_A           81 EELKDILSETKILVISLAVGV--TTPLIEKWLGK  112 (280)
T ss_dssp             HHHHHHHHTTTCEEEECCTTC--CHHHHHHHHTC
T ss_pred             HHHHhhccCCCeEEEEecCCC--CHHHHHHHcCC
Confidence            333344 68888999887664  35677777765

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.60  E-value=2.8e-07  Score=90.39  Aligned_cols=102  Identities=22%  Similarity=0.332  Sum_probs=78.9

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CC---------------------ccccCCHHhhhcCCCEE
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VP---------------------YAFYSNVCELAANSDAL  215 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~---------------------~~~~~~l~ell~~aDiV  215 (331)
                      -+++|||+|.||..+|..|...|++|++||++++.     .+                     .....++.+++++||+|
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvv   88 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAV   88 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEE
Confidence            47999999999999999999999999999998765     11                     12246788999999999


Q ss_pred             EEeccCCh----------hhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073          216 IICCALTD----------QTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG  264 (331)
Q Consensus       216 ~l~~P~t~----------~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~  264 (331)
                      ++|+|...          ..+..+ +...+.+++|.++|+.|.-..=..+.+.+.+.+.
T Consensus        89 ii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~  146 (446)
T 4a7p_A           89 FIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAEV  146 (446)
T ss_dssp             EECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHH
T ss_pred             EEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh
Confidence            99988543          233333 4566789999999999865555566677766653

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.59  E-value=4.5e-08  Score=88.64  Aligned_cols=95  Identities=19%  Similarity=0.276  Sum_probs=70.7

Q ss_pred             ceEEEEecChHHHHHHHHHhhCC-CEEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFG-CNVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      ++|+|||+|.||+.+|+.|...| .+|.+++|+++.       .+.....++.+++ ++|+|++|+| ......++..  
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~~~--   76 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAACKN--   76 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHHTT--
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHHHH--
Confidence            37999999999999999999889 999999998643       1333345677888 9999999999 5555555431  


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRG  264 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~  264 (331)
                      +.. + +.++|+++.|--.  +.+.+.+..+
T Consensus        77 l~~-~-~~ivv~~~~g~~~--~~l~~~~~~~  103 (263)
T 1yqg_A           77 IRT-N-GALVLSVAAGLSV--GTLSRYLGGT  103 (263)
T ss_dssp             CCC-T-TCEEEECCTTCCH--HHHHHHTTSC
T ss_pred             hcc-C-CCEEEEecCCCCH--HHHHHHcCCC
Confidence            222 4 8899999665433  6677777654

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.58  E-value=5.7e-08  Score=90.95  Aligned_cols=86  Identities=21%  Similarity=0.191  Sum_probs=69.1

Q ss_pred             CCceEEEEecChHHHHHHHHHhh-CCC-EEEEECCCCCC-------CC--ccccCCHHhhhcCCCEEEEeccCChhhhhh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQA-FGC-NVLYNSRSKKP-------VP--YAFYSNVCELAANSDALIICCALTDQTRRM  228 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~-------~~--~~~~~~l~ell~~aDiV~l~~P~t~~t~~l  228 (331)
                      .++++||||+|.||+.+++.+.. +|. +|.+|+|+++.       .+  .....+++++++++|+|++|+|..   ..+
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~---~~v  210 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLAT---EPI  210 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCS---SCC
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCC---Ccc
Confidence            46789999999999999999875 487 89999998654       12  334578999999999999999853   456


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCc
Q 020073          229 INREVMLALGKEGIIVNVGRGAV  251 (331)
Q Consensus       229 i~~~~l~~mk~ga~lIn~srg~~  251 (331)
                      +..   +.+++|.++++++....
T Consensus       211 ~~~---~~l~~g~~vi~~g~~~p  230 (312)
T 2i99_A          211 LFG---EWVKPGAHINAVGASRP  230 (312)
T ss_dssp             BCG---GGSCTTCEEEECCCCST
T ss_pred             cCH---HHcCCCcEEEeCCCCCC
Confidence            654   56899999999976654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.55  E-value=3e-07  Score=90.41  Aligned_cols=101  Identities=17%  Similarity=0.239  Sum_probs=77.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----C-------------------C--ccccCCHHhhhcCCCEE
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----V-------------------P--YAFYSNVCELAANSDAL  215 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~-------------------~--~~~~~~l~ell~~aDiV  215 (331)
                      ++|+|||+|.||..+|..|...|++|+++|++++.     .                   .  .....++.+++++||+|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV   82 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII   82 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence            58999999999999999999999999999997643     0                   0  12245788899999999


Q ss_pred             EEeccCCh---------hhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073          216 IICCALTD---------QTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR  263 (331)
Q Consensus       216 ~l~~P~t~---------~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~  263 (331)
                      ++|+|...         ..+..+ +...+.+++|.++|+.|.-..=..+.+.+.+.+
T Consensus        83 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~  138 (450)
T 3gg2_A           83 FIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE  138 (450)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence            99998653         344443 456667899999999996554455566666654

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.53  E-value=1.3e-07  Score=78.76  Aligned_cols=101  Identities=13%  Similarity=0.229  Sum_probs=79.0

Q ss_pred             CceEEEEec----ChHHHHHHHHHhhCCCEEEEECCCC--CC-CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHH
Q 020073          161 GKRVGIVGL----GNIGLQVAKRLQAFGCNVLYNSRSK--KP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       161 g~~vgIiG~----G~IG~~~A~~l~~~G~~V~~~~~~~--~~-~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      -++|+|||+    |.+|..+++.|...|++|+.+++..  .. .+...+.+++++....|++++++| .+....++.. .
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v~~~-~   90 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFRN-SEAAWGVAQE-A   90 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECCSC-STHHHHHHHH-H
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHHHH-H
Confidence            467999999    8999999999999999998888876  43 455556789999999999999999 4677777633 3


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceE
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAG  268 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~g  268 (331)
                      .+ ...++++++.+  ..  ++++.+++++..++-
T Consensus        91 ~~-~g~~~i~i~~~--~~--~~~l~~~a~~~Gi~~  120 (145)
T 2duw_A           91 IA-IGAKTLWLQLG--VI--NEQAAVLAREAGLSV  120 (145)
T ss_dssp             HH-HTCCEEECCTT--CC--CHHHHHHHHTTTCEE
T ss_pred             HH-cCCCEEEEcCC--hH--HHHHHHHHHHcCCEE
Confidence            33 56677877753  22  778888888877763

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.49  E-value=3.2e-07  Score=84.39  Aligned_cols=122  Identities=21%  Similarity=0.246  Sum_probs=88.4

Q ss_pred             CccCCCceEEEEecCh-HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.+++|+++.|||.|. +|+.+|..|...|++|++++++        ..+|.+.+++||+|+.+++.    .++|.++. 
T Consensus       155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~--------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~-  221 (285)
T 3p2o_A          155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK--------TKDLSLYTRQADLIIVAAGC----VNLLRSDM-  221 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------CSCHHHHHTTCSEEEECSSC----TTCBCGGG-
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC--------chhHHHHhhcCCEEEECCCC----CCcCCHHH-
Confidence            3468999999999988 6999999999999999998764        24799999999999999873    45677755 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAV  312 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~  312 (331)
                        +|+|+++||++.-.+-|          |++   .-||-..+-      .+ .--.+||=-||.-.-+..-+.+.++
T Consensus       222 --vk~GavVIDVgi~~~~~----------gkl---~GDVdf~~v------~~-~a~~iTPVPGGVGpmT~a~Ll~ntv  277 (285)
T 3p2o_A          222 --VKEGVIVVDVGINRLES----------GKI---VGDVDFEEV------SK-KSSYITPVPGGVGPMTIAMLLENTV  277 (285)
T ss_dssp             --SCTTEEEEECCCEECTT----------SCE---ECSBCHHHH------TT-TEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred             --cCCCeEEEEeccCcccC----------CCE---eccccHHHH------Hh-hheEeCCCCCcCcHHHHHHHHHHHH
Confidence              59999999999766432          655   457732111      00 1346899777765544444444333

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.48  E-value=3.5e-07  Score=84.16  Aligned_cols=123  Identities=20%  Similarity=0.242  Sum_probs=89.0

Q ss_pred             CccCCCceEEEEecCh-HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.+++|+++.|||.|. +|+.+|+.|...|++|+++.++        ..+|.+.+++||+|+.+++.    .++|.++. 
T Consensus       156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~-  222 (285)
T 3l07_A          156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF--------TTDLKSHTTKADILIVAVGK----PNFITADM-  222 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------CSSHHHHHTTCSEEEECCCC----TTCBCGGG-
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC--------chhHHHhcccCCEEEECCCC----CCCCCHHH-
Confidence            3469999999999988 6999999999999999988754        24799999999999999873    34677755 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN  314 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n  314 (331)
                        +|+|+++||++.-.+ +          |++   .-||-..+=      .+ .--.+||=-||.-.-+..-+.+.+++.
T Consensus       223 --vk~GavVIDvgi~~~-~----------g~l---~GDVdf~~v------~~-~a~~iTPVPGGVGpmT~a~Ll~ntv~a  279 (285)
T 3l07_A          223 --VKEGAVVIDVGINHV-D----------GKI---VGDVDFAAV------KD-KVAAITPVPGGVGPMTITELLYNTFQC  279 (285)
T ss_dssp             --SCTTCEEEECCCEEE-T----------TEE---ECSBCHHHH------TT-TCSEECCSSSSSHHHHHHHHHHHHHHH
T ss_pred             --cCCCcEEEEecccCc-C----------Cce---ecCccHHHH------Hh-hheEeCCCCCcChHHHHHHHHHHHHHH
Confidence              599999999996553 1          544   467742211      11 123689977777665554444444443

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.47  E-value=3.6e-07  Score=90.58  Aligned_cols=113  Identities=16%  Similarity=0.209  Sum_probs=80.2

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--C---------------C-------------ccccCCHHhhhc
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--V---------------P-------------YAFYSNVCELAA  210 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--~---------------~-------------~~~~~~l~ell~  210 (331)
                      -++|||||+|.||..+|..+...|++|+++|++++.  .               +             .....+++ .++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~   83 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA   83 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc
Confidence            358999999999999999999999999999988643  0               0             01234554 689


Q ss_pred             CCCEEEEeccCChhhhhhccHHHHhcCCCCcEEE-EcCCCCccCHHHHHHHHHhCCceEEEeecCCCCC
Q 020073          211 NSDALIICCALTDQTRRMINREVMLALGKEGIIV-NVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEP  278 (331)
Q Consensus       211 ~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lI-n~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP  278 (331)
                      +||+|+.++|...+.+.-+-++..+.++++++++ |+|.-   ....+.+.+.. .-...++..|.+-|
T Consensus        84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti---~i~~ia~~~~~-p~~~ig~hf~~Pa~  148 (483)
T 3mog_A           84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSI---SITAIAAEIKN-PERVAGLHFFNPAP  148 (483)
T ss_dssp             GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSS---CHHHHTTTSSS-GGGEEEEEECSSTT
T ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCC---CHHHHHHHccC-ccceEEeeecChhh
Confidence            9999999999887665444455667789999984 66643   33455555532 23346677666444

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.46  E-value=2.3e-07  Score=81.19  Aligned_cols=109  Identities=18%  Similarity=0.228  Sum_probs=78.8

Q ss_pred             eEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC-----C--C------ccccCCHHhhhcCCCEEEEeccCChhhhhh
Q 020073          163 RVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP-----V--P------YAFYSNVCELAANSDALIICCALTDQTRRM  228 (331)
Q Consensus       163 ~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~--~------~~~~~~l~ell~~aDiV~l~~P~t~~t~~l  228 (331)
                      +++|+| .|.||+.+++.|...|++|.+++|+++.     .  +      .....++.++++++|+|++++|. ..+..+
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~~-~~~~~~   80 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPW-EHAIDT   80 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCH-HHHHHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCCh-hhHHHH
Confidence            799999 9999999999999999999999987543     0  1      01134678889999999999983 445555


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCccC------------HHHHHHHHHhCCceEEEeecCCCCC
Q 020073          229 INREVMLALGKEGIIVNVGRGAVID------------ENEMVRCLVRGEIAGAGLDVFENEP  278 (331)
Q Consensus       229 i~~~~l~~mk~ga~lIn~srg~~vd------------~~al~~aL~~~~i~ga~lDV~~~EP  278 (331)
                      +. +..+.++ +.++|+++.|--.+            .+.+.+.+...    ..++++.+.|
T Consensus        81 ~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~~----~~v~~~~~~~  136 (212)
T 1jay_A           81 AR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESE----KVVSALHTIP  136 (212)
T ss_dssp             HH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCS----CEEECCTTCC
T ss_pred             HH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCCC----eEEEEccchH
Confidence            43 2333454 89999999876532            56677777532    2467777666

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.46  E-value=3e-07  Score=84.70  Aligned_cols=130  Identities=18%  Similarity=0.238  Sum_probs=94.8

Q ss_pred             CccCCCceEEEEecCh-HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.+++|+++.|||.|. +|+.+|+.|...|++|+++++..        .++.+.+++||+|+.+++..    ++|.++. 
T Consensus       154 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------~~L~~~~~~ADIVI~Avg~p----~lI~~~~-  220 (288)
T 1b0a_A          154 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------KNLRHHVENADLLIVAVGKP----GFIPGDW-  220 (288)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------SCHHHHHHHCSEEEECSCCT----TCBCTTT-
T ss_pred             CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc--------hhHHHHhccCCEEEECCCCc----CcCCHHH-
Confidence            3479999999999997 59999999999999999886532        57999999999999999732    3687766 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN  314 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n  314 (331)
                        +|+|+++||+|.-.+-|          |++   .-||-..+      ..+. --.+||=-||.-.-+..-+.+.+++.
T Consensus       221 --vk~GavVIDVgi~r~~~----------g~l---~GDVdf~~------v~~~-a~~iTPVPGGVGpmT~a~Ll~Ntv~a  278 (288)
T 1b0a_A          221 --IKEGAIVIDVGINRLEN----------GKV---VGDVVFED------AAKR-ASYITPVPGGVGPMTVATLIENTLQA  278 (288)
T ss_dssp             --SCTTCEEEECCCEECTT----------SCE---ECSBCHHH------HHHH-CSEECCSSSSSHHHHHHHHHHHHHHH
T ss_pred             --cCCCcEEEEccCCccCC----------CCc---cCCcCHHH------Hhhh-ccEecCCCCCccHHHHHHHHHHHHHH
Confidence              59999999999766432          544   45763211      1111 23589988887766666666666665


Q ss_pred             HHHHHc
Q 020073          315 LEALFS  320 (331)
Q Consensus       315 l~~~~~  320 (331)
                      .++++.
T Consensus       279 a~~~~~  284 (288)
T 1b0a_A          279 CVEYHD  284 (288)
T ss_dssp             HHHTTS
T ss_pred             HHHhhc
Confidence            555443

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=98.46  E-value=7.1e-07  Score=80.05  Aligned_cols=70  Identities=13%  Similarity=0.208  Sum_probs=57.9

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKE  240 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~g  240 (331)
                      .++|||||+|.||.++|+.|+..|++|.+|++.            ++ +++||  ++++|.. ....++ .+....+++|
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------~~-~~~aD--ilavP~~-ai~~vl-~~l~~~l~~g   68 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------ED-IRDFE--LVVIDAH-GVEGYV-EKLSAFARRG   68 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------GG-GGGCS--EEEECSS-CHHHHH-HHHHTTCCTT
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------HH-hccCC--EEEEcHH-HHHHHH-HHHHHhcCCC
Confidence            358999999999999999999999999999872            22 57899  8899976 666666 4566678999


Q ss_pred             cEEEEcC
Q 020073          241 GIIVNVG  247 (331)
Q Consensus       241 a~lIn~s  247 (331)
                      +++|+++
T Consensus        69 ~ivvd~s   75 (232)
T 3dfu_A           69 QMFLHTS   75 (232)
T ss_dssp             CEEEECC
T ss_pred             CEEEEEC
Confidence            9999975

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.45  E-value=1.4e-07  Score=88.35  Aligned_cols=90  Identities=19%  Similarity=0.236  Sum_probs=70.2

Q ss_pred             CCCccCCCceEEEEecChH-HHHHHHHHhhCCCEEEEECCCCCC-------CC---ccc-----c--CCHHhhhcCCCEE
Q 020073          154 PLGSKLGGKRVGIVGLGNI-GLQVAKRLQAFGCNVLYNSRSKKP-------VP---YAF-----Y--SNVCELAANSDAL  215 (331)
Q Consensus       154 ~~~~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~~~~~~~-------~~---~~~-----~--~~l~ell~~aDiV  215 (331)
                      +.+.++.|+++.|||.|.| |+.+|+.|.+.|++|++++|+...       ..   ...     .  .++.+.+++||+|
T Consensus       170 ~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIV  249 (320)
T 1edz_A          170 PEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVV  249 (320)
T ss_dssp             CTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEE
T ss_pred             ccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEE
Confidence            3566899999999999976 999999999999999999886221       11   111     1  4689999999999


Q ss_pred             EEeccCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 020073          216 IICCALTDQTRRMINREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       216 ~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg  249 (331)
                      +.+++..   .-+|..+.   +|+|+++||+|..
T Consensus       250 IsAtg~p---~~vI~~e~---vk~GavVIDVgi~  277 (320)
T 1edz_A          250 ITGVPSE---NYKFPTEY---IKEGAVCINFACT  277 (320)
T ss_dssp             EECCCCT---TCCBCTTT---SCTTEEEEECSSS
T ss_pred             EECCCCC---cceeCHHH---cCCCeEEEEcCCC
Confidence            9998742   22377766   5999999999864

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.45  E-value=6.6e-07  Score=82.91  Aligned_cols=135  Identities=18%  Similarity=0.238  Sum_probs=94.1

Q ss_pred             CccCCCceEEEEecCh-HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.+++|+++.|||.|. +|+.+|+.|...|++|+++++.        ..+|.+.+++||+|+.+++.    .++|.++. 
T Consensus       160 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~-  226 (301)
T 1a4i_A          160 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK--------TAHLDEEVNKGDILVVATGQ----PEMVKGEW-  226 (301)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------CSSHHHHHTTCSEEEECCCC----TTCBCGGG-
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC--------cccHHHHhccCCEEEECCCC----cccCCHHH-
Confidence            4579999999999996 6999999999999999998653        35799999999999999875    34687766 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhC-CceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRG-EIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVG  313 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~-~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~  313 (331)
                        +|+|+++||+|.-.+-|..     -.+| ++.   -||-..+      ..+ .--.+||=-||.-.-+..-+.+.+++
T Consensus       227 --vk~GavVIDVgi~~~~d~~-----~~~g~klv---GDVdf~~------v~~-~a~~iTPVPGGVGpmTiamLl~Ntv~  289 (301)
T 1a4i_A          227 --IKPGAIVIDCGINYVPDDK-----KPNGRKVV---GDVAYDE------AKE-RASFITPVPGGVGPMTVAMLMQSTVE  289 (301)
T ss_dssp             --SCTTCEEEECCCBC---------------CCB---CSBCHHH------HTT-TCSEECCSSSSHHHHHHHHHHHHHHH
T ss_pred             --cCCCcEEEEccCCCccccc-----ccCCCeee---ccccHHH------hhh-hceEeCCCCCCccHHHHHHHHHHHHH
Confidence              5899999999986643321     1233 442   3663211      111 13368998888766666666666666


Q ss_pred             HHHHHHc
Q 020073          314 NLEALFS  320 (331)
Q Consensus       314 nl~~~~~  320 (331)
                      ..++++.
T Consensus       290 aa~~~~~  296 (301)
T 1a4i_A          290 SAKRFLE  296 (301)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            6666554

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.45  E-value=3.7e-07  Score=83.58  Aligned_cols=122  Identities=16%  Similarity=0.180  Sum_probs=87.9

Q ss_pred             CCCceEEEEecCh-HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcC
Q 020073          159 LGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLAL  237 (331)
Q Consensus       159 l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~m  237 (331)
                      ++|+++.|||.|. +|+.+|+.|.+.|++|+++++.        ..++.+.+++||+|+.+++.    .++|.++.   +
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~--------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~---v  212 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK--------TKDIGSMTRSSKIVVVAVGR----PGFLNREM---V  212 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------CSCHHHHHHHSSEEEECSSC----TTCBCGGG---C
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC--------cccHHHhhccCCEEEECCCC----CccccHhh---c
Confidence            7899999999986 7999999999999999998763        25799999999999999974    34677755   5


Q ss_pred             CCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 020073          238 GKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLE  316 (331)
Q Consensus       238 k~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~  316 (331)
                      |+|+++||++.-. .          +|++   .-||-..+      ..+ .--.+||=-||.-.-+..-+.+.+++..+
T Consensus       213 k~GavVIDvgi~~-~----------~gkl---~GDVdf~~------v~~-~a~~iTPVPGGVGpmT~a~Ll~n~v~a~~  270 (276)
T 3ngx_A          213 TPGSVVIDVGINY-V----------NDKV---VGDANFED------LSE-YVEAITPVPGGVGPITATNILENVVKAAE  270 (276)
T ss_dssp             CTTCEEEECCCEE-E----------TTEE---ECSBCHHH------HHT-TSSEECCTTTSSHHHHHHHHHHHHHHHHH
T ss_pred             cCCcEEEEeccCc-c----------CCce---eccccHHH------Hhh-hceEeCCCCCcChHHHHHHHHHHHHHHHH
Confidence            9999999999655 2          2444   45774211      111 12378997777665554444444444333

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.44  E-value=4.1e-07  Score=85.89  Aligned_cols=89  Identities=20%  Similarity=0.200  Sum_probs=69.3

Q ss_pred             CceEEEEecChHHHHHHHHHhhCC-------CEEEEECCCCC-----C---C-----------C------ccccCCHHhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFG-------CNVLYNSRSKK-----P---V-----------P------YAFYSNVCEL  208 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G-------~~V~~~~~~~~-----~---~-----------~------~~~~~~l~el  208 (331)
                      .++|+|||+|.||..+|..|...|       .+|.+++|++.     .   .           +      .....++.++
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA   87 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence            368999999999999999998878       89999999775     2   0           0      1123567888


Q ss_pred             hcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCc
Q 020073          209 AANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAV  251 (331)
Q Consensus       209 l~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~  251 (331)
                      ++.+|+|++|+|. ..+..++ ++....+++++++|+++.|-.
T Consensus        88 ~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           88 AEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred             HcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence            9999999999995 4555555 344556789999999988754

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.44  E-value=2.8e-07  Score=84.92  Aligned_cols=104  Identities=12%  Similarity=0.068  Sum_probs=73.6

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-C----Cc--cccCCHHhhhcCCCEEEEeccCC--hhhhh
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-V----PY--AFYSNVCELAANSDALIICCALT--DQTRR  227 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-~----~~--~~~~~l~ell~~aDiV~l~~P~t--~~t~~  227 (331)
                      ++.|+++.|+|.|.+|++++..|...|+ +|++++|+.++ .    ..  ..+.++.++++++|+|+.++|..  +....
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~  193 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDS  193 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcC
Confidence            4789999999999999999999999999 89999998755 1    11  12345677789999999999875  22222


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 020073          228 MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       228 li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i  266 (331)
                      .++   .+.++++.+++++.-.... . .++++.++..+
T Consensus       194 ~l~---~~~l~~~~~V~D~vY~P~~-T-~ll~~A~~~G~  227 (277)
T 3don_A          194 VIS---LNRLASHTLVSDIVYNPYK-T-PILIEAEQRGN  227 (277)
T ss_dssp             SSC---CTTCCSSCEEEESCCSSSS-C-HHHHHHHHTTC
T ss_pred             CCC---HHHcCCCCEEEEecCCCCC-C-HHHHHHHHCcC
Confidence            233   3557899999999877543 3 35544444433

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.44  E-value=1.3e-06  Score=86.43  Aligned_cols=97  Identities=19%  Similarity=0.180  Sum_probs=73.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhC-CC-EEEEECCCCC----C-----CC---c--------------------cccCCHHh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF-GC-NVLYNSRSKK----P-----VP---Y--------------------AFYSNVCE  207 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~-G~-~V~~~~~~~~----~-----~~---~--------------------~~~~~l~e  207 (331)
                      ++|+|||+|.||..+|..|... |+ +|++||++++    .     .+   .                    ....+ .+
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~e   97 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-FS   97 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-GG
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-HH
Confidence            5899999999999999999999 99 9999999887    3     11   0                    01123 57


Q ss_pred             hhcCCCEEEEeccCCh--------hhhhhc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHH
Q 020073          208 LAANSDALIICCALTD--------QTRRMI--NREVMLALGKEGIIVNVGRGAVIDENEMVR  259 (331)
Q Consensus       208 ll~~aDiV~l~~P~t~--------~t~~li--~~~~l~~mk~ga~lIn~srg~~vd~~al~~  259 (331)
                      ++++||+|++|+|...        .+..+.  .+...+.+++|.++|+.|.-.+=..+.+.+
T Consensus        98 a~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~  159 (478)
T 3g79_A           98 RISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAK  159 (478)
T ss_dssp             GGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHH
T ss_pred             HHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHH
Confidence            8899999999999652        233333  245667799999999998766655555654

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.43  E-value=2.8e-07  Score=87.87  Aligned_cols=100  Identities=15%  Similarity=0.105  Sum_probs=76.2

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CC--------------ccccCCHHhhhcCCCEEEEecc
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VP--------------YAFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~--------------~~~~~~l~ell~~aDiV~l~~P  220 (331)
                      .++|+|||.|.||..+|..|...|.+|.+|+|+++.      ..              .....++.++++.+|+|++++|
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp  108 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVP  108 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCC
Confidence            468999999999999999999999999999997532      00              1223578899999999999999


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCCccCH----HHHHHHHH
Q 020073          221 LTDQTRRMINREVMLALGKEGIIVNVGRGAVIDE----NEMVRCLV  262 (331)
Q Consensus       221 ~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~----~al~~aL~  262 (331)
                      . ...+.++ ++....+++++++|+++.|-..+.    +.+.+.+.
T Consensus       109 ~-~~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~  152 (356)
T 3k96_A          109 S-FAFHEVI-TRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELG  152 (356)
T ss_dssp             H-HHHHHHH-HHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHC
T ss_pred             H-HHHHHHH-HHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcC
Confidence            4 3556555 455667899999999988766543    34445444

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.43  E-value=4.9e-07  Score=82.97  Aligned_cols=120  Identities=16%  Similarity=0.204  Sum_probs=87.6

Q ss_pred             CccCCCceEEEEecChH-HHHHHHHHhhC--CCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHH
Q 020073          156 GSKLGGKRVGIVGLGNI-GLQVAKRLQAF--GCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINRE  232 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~I-G~~~A~~l~~~--G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~  232 (331)
                      +.+++|+++.|||.|.| |+.+|+.|...  |++|++++++.        .+|.+.+++||+|+.+++..    ++|.++
T Consensus       153 ~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t--------~~L~~~~~~ADIVI~Avg~p----~~I~~~  220 (281)
T 2c2x_A          153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT--------RDLPALTRQADIVVAAVGVA----HLLTAD  220 (281)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC--------SCHHHHHTTCSEEEECSCCT----TCBCGG
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch--------hHHHHHHhhCCEEEECCCCC----cccCHH
Confidence            34699999999999985 99999999999  89999987542        57999999999999998732    368776


Q ss_pred             HHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHH
Q 020073          233 VMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAV  312 (331)
Q Consensus       233 ~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~  312 (331)
                      .   +|+|+++||+|.-.+-|          |    ..-||- .+      ..+ .--.+||=-||.-.-+..-+.+.++
T Consensus       221 ~---vk~GavVIDVgi~r~~~----------g----lvGDVd-~~------v~~-~a~~iTPVPGGVGpmT~a~Ll~ntv  275 (281)
T 2c2x_A          221 M---VRPGAAVIDVGVSRTDD----------G----LVGDVH-PD------VWE-LAGHVSPNPGGVGPLTRAFLLTNVV  275 (281)
T ss_dssp             G---SCTTCEEEECCEEEETT----------E----EEESBC-GG------GGG-TCSEEECSSSSSHHHHHHHHHHHHH
T ss_pred             H---cCCCcEEEEccCCCCCC----------C----ccCccc-cc------hhh-heeeecCCCCCccHHHHHHHHHHHH
Confidence            6   59999999999766432          3    456874 11      111 1235899777766544444443333

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.42  E-value=4.8e-07  Score=83.87  Aligned_cols=133  Identities=20%  Similarity=0.187  Sum_probs=92.0

Q ss_pred             ccCCCceEEEEecCh-HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHH--hhhcCCCEEEEeccCChhhhhhccHHH
Q 020073          157 SKLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVC--ELAANSDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~--ell~~aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      .+++|+++.|||.|. +|+.+|+.|...|++|+++++..        .++.  +.+++||+|+.++|.    .++|.++.
T Consensus       161 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T--------~~l~l~~~~~~ADIVI~Avg~----p~~I~~~~  228 (300)
T 4a26_A          161 IEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT--------STEDMIDYLRTADIVIAAMGQ----PGYVKGEW  228 (300)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS--------CHHHHHHHHHTCSEEEECSCC----TTCBCGGG
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC--------CCchhhhhhccCCEEEECCCC----CCCCcHHh
Confidence            468999999999988 69999999999999999987632        2566  999999999999984    34677755


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHH
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVG  313 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~  313 (331)
                         +|+|+++||++.-.+-|..     -.+|.  ...-||-..+      ..+ .--.+||=-||.-.-+..-+.+.+++
T Consensus       229 ---vk~GavVIDvgi~~~~~~~-----~~~g~--kl~GDVdf~~------v~~-~a~~iTPVPGGVGpmT~a~Ll~Ntv~  291 (300)
T 4a26_A          229 ---IKEGAAVVDVGTTPVPDPS-----RKDGY--RLVGDVCFEE------AAA-RAAWISPVPGGVGPMTIAMLLENTLE  291 (300)
T ss_dssp             ---SCTTCEEEECCCEEESCSC-----STTSC--EEECSBCHHH------HTT-TCSEEECTTTSSSHHHHHHHHHHHHH
T ss_pred             ---cCCCcEEEEEeccCCcCCc-----ccCCc--eeecCccHHH------HHh-hceEeCCCCCcChHHHHHHHHHHHHH
Confidence               5999999999865432210     00111  1345664211      111 12468997777776665655555555


Q ss_pred             HHHHH
Q 020073          314 NLEAL  318 (331)
Q Consensus       314 nl~~~  318 (331)
                      ..+++
T Consensus       292 aa~~~  296 (300)
T 4a26_A          292 AFKAA  296 (300)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.42  E-value=6.7e-07  Score=82.28  Aligned_cols=124  Identities=20%  Similarity=0.270  Sum_probs=87.6

Q ss_pred             CccCCCceEEEEecCh-HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.+++|+++.|||.|. +|+.+|..|...|++|+++.+.        ..+|.+.+++||+|+.++|.    .++|.++. 
T Consensus       156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~--------T~~L~~~~~~ADIVI~Avg~----p~~I~~~~-  222 (286)
T 4a5o_A          156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRF--------TRDLADHVSRADLVVVAAGK----PGLVKGEW-  222 (286)
T ss_dssp             TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTT--------CSCHHHHHHTCSEEEECCCC----TTCBCGGG-
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC--------CcCHHHHhccCCEEEECCCC----CCCCCHHH-
Confidence            3478999999999987 7999999999999999988653        24799999999999999873    35677755 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN  314 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n  314 (331)
                        +|+|+++||++.-.+-|          |++.   -||-..+      ..+ .--.+||=-||.-.-+..-+.+.+++.
T Consensus       223 --vk~GavVIDvgi~~~~~----------gkl~---GDVdf~~------v~~-~a~~iTPVPGGVGpmT~a~Ll~ntv~a  280 (286)
T 4a5o_A          223 --IKEGAIVIDVGINRQAD----------GRLV---GDVEYEV------AAQ-RASWITPVPGGVGPMTRACLLENTLHA  280 (286)
T ss_dssp             --SCTTCEEEECCSCSSCC----------CCSS---CSBCHHH------HHH-HCSEECCSSCSHHHHHHHHHHHHHHHH
T ss_pred             --cCCCeEEEEeccccccc----------CCcc---cCccHHH------HHh-hceEeCCCCCcchHHHHHHHHHHHHHH
Confidence              59999999999766432          5542   4552111      000 013688976775554444444444433

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.42  E-value=7.4e-07  Score=86.26  Aligned_cols=100  Identities=13%  Similarity=0.114  Sum_probs=75.7

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCc-------------------cccCCHHhhhcCCCEEEE
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPY-------------------AFYSNVCELAANSDALII  217 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~-------------------~~~~~l~ell~~aDiV~l  217 (331)
                      ++|+|||+|.||..+|..|.. |.+|++++++++.     .+.                   ....++.+.++.||+|++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            379999999999999999999 9999999987543     111                   223467788899999999


Q ss_pred             eccCCh----------hhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073          218 CCALTD----------QTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG  264 (331)
Q Consensus       218 ~~P~t~----------~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~  264 (331)
                      |+|...          .+...+ +.... +++++++|+.|.-.+-..+.+.+.+...
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~  134 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD  134 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS
T ss_pred             ecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC
Confidence            999753          244444 34455 8999999997776666677777777554

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.42  E-value=8.9e-07  Score=83.41  Aligned_cols=99  Identities=19%  Similarity=0.210  Sum_probs=74.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C-Cc--------------cccCCHHhhhcCCCEEEEecc
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V-PY--------------AFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~-~~--------------~~~~~l~ell~~aDiV~l~~P  220 (331)
                      ++|+|||+|.||..+|..|...|++|.+++|+++.      . +.              ....+++++++.+|+|++|+|
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   84 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   84 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence            58999999999999999999999999999987543      1 11              134578888999999999999


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073          221 LTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR  263 (331)
Q Consensus       221 ~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~  263 (331)
                      ... +..++ ++....+++++++|+. -|.......+.+.+..
T Consensus        85 ~~~-~~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~  124 (359)
T 1bg6_A           85 AIH-HASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE  124 (359)
T ss_dssp             GGG-HHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred             chH-HHHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence            654 35555 4556678999999998 4522344445566655

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.40  E-value=5.3e-07  Score=81.97  Aligned_cols=99  Identities=15%  Similarity=0.156  Sum_probs=75.0

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-----C--CccccCCHHhhhcCCCEEEEeccCChhh-hhhc
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-----V--PYAFYSNVCELAANSDALIICCALTDQT-RRMI  229 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-----~--~~~~~~~l~ell~~aDiV~l~~P~t~~t-~~li  229 (331)
                      +.| +++|||.|.+|++++..|...|+ +|++++|+.++     .  +.....++.+.++++|+|++++|..-.. ...+
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~~~i  185 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEELPV  185 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCCCSC
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCCCCC
Confidence            578 99999999999999999999999 89999998654     1  1123456788899999999999864211 1234


Q ss_pred             cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073          230 NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG  264 (331)
Q Consensus       230 ~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~  264 (331)
                      +.+.   ++++.+++++.-+   ...-+.+|.+.|
T Consensus       186 ~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G  214 (253)
T 3u62_A          186 SDDS---LKNLSLVYDVIYF---DTPLVVKARKLG  214 (253)
T ss_dssp             CHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred             CHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence            5444   4789999999988   555556666665

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.40  E-value=3.9e-07  Score=85.11  Aligned_cols=98  Identities=13%  Similarity=0.107  Sum_probs=71.8

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECC--CCCC------CCc-----------cccC--CHHhhhcCCCEEEEeccC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSR--SKKP------VPY-----------AFYS--NVCELAANSDALIICCAL  221 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~--~~~~------~~~-----------~~~~--~l~ell~~aDiV~l~~P~  221 (331)
                      +|+|||+|.||+.+|..|...|.+|++++|  +++.      .+.           ....  ++.++++++|+|++++|.
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVST   81 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSCG
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCCh
Confidence            799999999999999999988999999999  6432      111           1223  677888999999999986


Q ss_pred             ChhhhhhccHHHHhcCCCCcEEEEcCCCC---cc-CHHHHHHHHHh
Q 020073          222 TDQTRRMINREVMLALGKEGIIVNVGRGA---VI-DENEMVRCLVR  263 (331)
Q Consensus       222 t~~t~~li~~~~l~~mk~ga~lIn~srg~---~v-d~~al~~aL~~  263 (331)
                      . .+..++ .+... ++++.++|+++.|-   -. ..+.+.+.+.+
T Consensus        82 ~-~~~~v~-~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~  124 (335)
T 1txg_A           82 D-GVLPVM-SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL  124 (335)
T ss_dssp             G-GHHHHH-HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred             H-HHHHHH-HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence            5 555555 34455 88899999998774   11 22345565654

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.40  E-value=3.1e-07  Score=81.38  Aligned_cols=86  Identities=19%  Similarity=0.242  Sum_probs=62.3

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEE-ECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHH
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLY-NSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMINRE  232 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~-~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~  232 (331)
                      .++|+|||+|.||+.+|+.|...|++|.+ ++|+++.       .+.....+..+.++++|+|++++|.. ....++.. 
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~~-  100 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYD-SIADIVTQ-  100 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGG-GHHHHHTT-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChH-HHHHHHHH-
Confidence            46899999999999999999999999998 9998754       12222334556689999999999833 33333321 


Q ss_pred             HHhcCCCCcEEEEcCCCC
Q 020073          233 VMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       233 ~l~~mk~ga~lIn~srg~  250 (331)
                       +.. .++.++|+++-|-
T Consensus       101 -l~~-~~~~ivi~~~~g~  116 (220)
T 4huj_A          101 -VSD-WGGQIVVDASNAI  116 (220)
T ss_dssp             -CSC-CTTCEEEECCCCB
T ss_pred             -hhc-cCCCEEEEcCCCC
Confidence             222 3578999998654

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.40  E-value=8.6e-07  Score=79.31  Aligned_cols=97  Identities=15%  Similarity=0.159  Sum_probs=73.5

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEE-EEECCCCCCCCccccCCHHhhh-cCCCEEEEeccCChhhhhhccHHHHhcCCCC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNV-LYNSRSKKPVPYAFYSNVCELA-ANSDALIICCALTDQTRRMINREVMLALGKE  240 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V-~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l~~P~t~~t~~li~~~~l~~mk~g  240 (331)
                      +|||||+|.||+.+++.+...|+++ .++|++.+...  .+.++++++ .++|+|++|+|....... +    ...++.|
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~~~~--~~~~~~~l~~~~~DvVv~~~~~~~~~~~-~----~~~l~~G   74 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHEK--MVRGIDEFLQREMDVAVEAASQQAVKDY-A----EKILKAG   74 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCCTT--EESSHHHHTTSCCSEEEECSCHHHHHHH-H----HHHHHTT
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcchhh--hcCCHHHHhcCCCCEEEECCCHHHHHHH-H----HHHHHCC
Confidence            7999999999999999998889997 68888753222  457899999 799999999985432222 2    3446789


Q ss_pred             cEEEEcCCCCccCH---HHHHHHHHhCCc
Q 020073          241 GIIVNVGRGAVIDE---NEMVRCLVRGEI  266 (331)
Q Consensus       241 a~lIn~srg~~vd~---~al~~aL~~~~i  266 (331)
                      ..+|..+-+..-++   +.|.++.++...
T Consensus        75 ~~vv~~~~~~~~~~~~~~~l~~~a~~~g~  103 (236)
T 2dc1_A           75 IDLIVLSTGAFADRDFLSRVREVCRKTGR  103 (236)
T ss_dssp             CEEEESCGGGGGSHHHHHHHHHHHHHHCC
T ss_pred             CcEEEECcccCChHHHHHHHHHHHHhcCC
Confidence            99999988877666   567777765443

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.39  E-value=7.8e-07  Score=88.04  Aligned_cols=102  Identities=16%  Similarity=0.196  Sum_probs=73.8

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----C--------C-------------ccccCCHHhhhcCCCE
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----V--------P-------------YAFYSNVCELAANSDA  214 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~--------~-------------~~~~~~l~ell~~aDi  214 (331)
                      ..+|+|||+|.||..+|..|...|++|+++|++++.     .        +             .....++.+.++.||+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv   87 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV   87 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence            368999999999999999999999999999987543     1        1             1123467788899999


Q ss_pred             EEEeccCC---------hhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073          215 LIICCALT---------DQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR  263 (331)
Q Consensus       215 V~l~~P~t---------~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~  263 (331)
                      |++|+|..         ...+..+ +.....+++++++|+.|.-.+=..+.+.+.+.+
T Consensus        88 viiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~  144 (478)
T 2y0c_A           88 QFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAE  144 (478)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHH
Confidence            99999863         3444444 445567899999999984333334445554443

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.39  E-value=5.2e-07  Score=86.21  Aligned_cols=88  Identities=14%  Similarity=0.198  Sum_probs=68.0

Q ss_pred             ceEEEEecChHHHHHHHHHhhCC-------CEEEEECCCCC-----C-----C---------------CccccCCHHhhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFG-------CNVLYNSRSKK-----P-----V---------------PYAFYSNVCELA  209 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G-------~~V~~~~~~~~-----~-----~---------------~~~~~~~l~ell  209 (331)
                      ++|+|||+|.||..+|..|...|       .+|.+|+|++.     .     .               ......++.+++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~  101 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI  101 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence            47999999999999999998778       89999999876     2     0               012235677889


Q ss_pred             cCCCEEEEeccCChhhhhhccHHHHh----cCCCCcEEEEcCCCCc
Q 020073          210 ANSDALIICCALTDQTRRMINREVML----ALGKEGIIVNVGRGAV  251 (331)
Q Consensus       210 ~~aDiV~l~~P~t~~t~~li~~~~l~----~mk~ga~lIn~srg~~  251 (331)
                      +++|+|++++| +.....++. +...    .+++++++|+++.|-.
T Consensus       102 ~~aDvVilav~-~~~~~~vl~-~i~~~~~~~l~~~~ivvs~~~Gi~  145 (375)
T 1yj8_A          102 NDADLLIFIVP-CQYLESVLA-SIKESESIKIASHAKAISLTKGFI  145 (375)
T ss_dssp             TTCSEEEECCC-HHHHHHHHH-HHTC---CCCCTTCEEEECCCSCE
T ss_pred             cCCCEEEEcCC-HHHHHHHHH-HHhhhhhccCCCCCEEEEeCCccc
Confidence            99999999999 456666552 3444    6788999999988743

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.37  E-value=6.4e-07  Score=88.31  Aligned_cols=111  Identities=15%  Similarity=0.217  Sum_probs=76.4

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC----C------------------------ccccCCHHhhhcCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV----P------------------------YAFYSNVCELAANS  212 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~------------------------~~~~~~l~ell~~a  212 (331)
                      -++|+|||+|.||..+|..+...|++|+++|++++..    .                        .....++ +.+++|
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a  115 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  115 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence            4689999999999999999999999999999875420    0                        0112355 568899


Q ss_pred             CEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCC
Q 020073          213 DALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE  275 (331)
Q Consensus       213 DiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~  275 (331)
                      |+|+.++|...+.+.-+-++..+.+++++++++...+  +....+.+.+... -..+++..|.
T Consensus       116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~--~~~~~la~~~~~~-~~~ig~hf~~  175 (463)
T 1zcj_A          116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTDRP-QLVIGTHFFS  175 (463)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSSCG-GGEEEEEECS
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--cCHHHHHHHhcCC-cceEEeecCC
Confidence            9999999976554443334555668999999874333  2334666655422 2235666663

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.37  E-value=1.2e-06  Score=86.74  Aligned_cols=101  Identities=17%  Similarity=0.157  Sum_probs=75.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhC--CCEEEEECCCCCC-----CC--------------------ccccCCHHhhhcCCCE
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF--GCNVLYNSRSKKP-----VP--------------------YAFYSNVCELAANSDA  214 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~~~~~~~-----~~--------------------~~~~~~l~ell~~aDi  214 (331)
                      ++|+|||+|.||..+|..|...  |.+|+++|++++.     .+                    .....++.+.+++||+
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv   89 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL   89 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence            5899999999999999999876  7899999987543     10                    1123456788899999


Q ss_pred             EEEeccCChh--------------hhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073          215 LIICCALTDQ--------------TRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR  263 (331)
Q Consensus       215 V~l~~P~t~~--------------t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~  263 (331)
                      |++|+|....              +...+ +...+.+++|.++|+.|.-.+=..+.+.+.+.+
T Consensus        90 vii~Vptp~~~~g~~~~~~~dl~~v~~~~-~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~  151 (481)
T 2o3j_A           90 IFISVNTPTKMYGRGKGMAPDLKYVESVS-RTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE  151 (481)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEecCCccccccccccCCCcHHHHHHHH-HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence            9999985431              22222 445667899999999886665556667788876

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.35  E-value=9.5e-07  Score=80.55  Aligned_cols=86  Identities=21%  Similarity=0.237  Sum_probs=65.5

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CC--cc-----ccCCHHhhhcCCCEEEEeccCChhhhhhc
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VP--YA-----FYSNVCELAANSDALIICCALTDQTRRMI  229 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~--~~-----~~~~l~ell~~aDiV~l~~P~t~~t~~li  229 (331)
                      +|+|||+|.||..+|..|...|.+|.+++|++..      ..  ..     ...+..+.++.+|+|++++|.. .+..++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~-~~~~v~   80 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAW-QVSDAV   80 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGG-GHHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHH-hHHHHH
Confidence            7999999999999999999999999999998764      11  00     0112346778999999999965 455555


Q ss_pred             cHHHHhcCCCCcEEEEcCCCC
Q 020073          230 NREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       230 ~~~~l~~mk~ga~lIn~srg~  250 (331)
                       ++....+++++++|++.-|-
T Consensus        81 -~~l~~~l~~~~~vv~~~~g~  100 (291)
T 1ks9_A           81 -KSLASTLPVTTPILLIHNGM  100 (291)
T ss_dssp             -HHHHTTSCTTSCEEEECSSS
T ss_pred             -HHHHhhCCCCCEEEEecCCC
Confidence             44556788899999986653

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.34  E-value=6.6e-07  Score=92.74  Aligned_cols=111  Identities=15%  Similarity=0.169  Sum_probs=77.8

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--C---------------C-------------ccccCCHHhhhc
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--V---------------P-------------YAFYSNVCELAA  210 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--~---------------~-------------~~~~~~l~ell~  210 (331)
                      -++|||||+|.||..+|..+...|++|+++|++++.  .               +             .....++ +.++
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~  392 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG  392 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence            357999999999999999999999999999987543  0               1             0112355 6789


Q ss_pred             CCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCC
Q 020073          211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE  275 (331)
Q Consensus       211 ~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~  275 (331)
                      +||+|+.++|.+.+.+.-+-++..+.++++++++..+.+  +....+.+.+.. .-...++..|.
T Consensus       393 ~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~-~~~~ig~hf~~  454 (715)
T 1wdk_A          393 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST--ISISLLAKALKR-PENFVGMHFFN  454 (715)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHGGGCSC-GGGEEEEECCS
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--CCHHHHHHHhcC-ccceEEEEccC
Confidence            999999999988766554445566778999998754443  333455555532 12235666665

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.32  E-value=2e-07  Score=88.62  Aligned_cols=89  Identities=12%  Similarity=0.140  Sum_probs=68.2

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C--------------CccccCCHHhhhcCCCEEEEeccCC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V--------------PYAFYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~--------------~~~~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      +|+|||+|.||..+|..|...|.+|.+|+|++..      .              ......++.++++.+|+|++|+|. 
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~-   95 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT-   95 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-
Confidence            8999999999999999999889999999987532      0              012235788889999999999994 


Q ss_pred             hhhhhhccHH---HHhcCCC-CcEEEEcCCCCcc
Q 020073          223 DQTRRMINRE---VMLALGK-EGIIVNVGRGAVI  252 (331)
Q Consensus       223 ~~t~~li~~~---~l~~mk~-ga~lIn~srg~~v  252 (331)
                      ..+..++...   ....+++ ++++|+++.|-..
T Consensus        96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            5556655331   4445677 8999999877443

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.32  E-value=1.2e-06  Score=85.52  Aligned_cols=103  Identities=20%  Similarity=0.252  Sum_probs=73.5

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCc--cccCCHHhh---------------hcCCCEEE
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPY--AFYSNVCEL---------------AANSDALI  216 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~--~~~~~l~el---------------l~~aDiV~  216 (331)
                      -+|.++.|||+|.||..+|..|...|++|++||++++.     .+.  .+...++++               +++||+|+
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvi   88 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFI   88 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEE
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEE
Confidence            46889999999999999999999999999999998754     111  111223322               45799999


Q ss_pred             EeccCChh--------hhhhc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHH
Q 020073          217 ICCALTDQ--------TRRMI--NREVMLALGKEGIIVNVGRGAVIDENEMVRCL  261 (331)
Q Consensus       217 l~~P~t~~--------t~~li--~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL  261 (331)
                      +|+|....        +..+.  .+...+.+++|+++|+.|.-.+=..+.+.+.+
T Consensus        89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i  143 (431)
T 3ojo_A           89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPV  143 (431)
T ss_dssp             ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHH
T ss_pred             EEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHH
Confidence            99996542        12233  24566779999999999977776667776654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.31  E-value=7.9e-07  Score=81.98  Aligned_cols=103  Identities=15%  Similarity=0.172  Sum_probs=72.6

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccc------------cCCHHhhhc---CCCEEEEecc
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAF------------YSNVCELAA---NSDALIICCA  220 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~------------~~~l~ell~---~aDiV~l~~P  220 (331)
                      ++|+|||+|.||+.+|..|...|.+|++++|+++.      .+...            ..+..++.+   ++|+|++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~   83 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK   83 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence            47999999999999999999999999999987543      11100            013334444   8999999999


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          221 LTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       221 ~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      . ..+..++ ++....+++++++|+++.|- -..+.+.+.+...++.
T Consensus        84 ~-~~~~~v~-~~l~~~l~~~~~iv~~~~g~-~~~~~l~~~~~~~~vi  127 (316)
T 2ew2_A           84 A-QQLDAMF-KAIQPMITEKTYVLCLLNGL-GHEDVLEKYVPKENIL  127 (316)
T ss_dssp             H-HHHHHHH-HHHGGGCCTTCEEEECCSSS-CTHHHHTTTSCGGGEE
T ss_pred             c-ccHHHHH-HHHHHhcCCCCEEEEecCCC-CcHHHHHHHcCCccEE
Confidence            4 4555555 34556688999999998653 3345666666554443

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.31  E-value=6.1e-07  Score=84.39  Aligned_cols=83  Identities=24%  Similarity=0.339  Sum_probs=64.6

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CC-----------ccccCCHHhhhcCCCEEEEeccCCh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VP-----------YAFYSNVCELAANSDALIICCALTD  223 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~-----------~~~~~~l~ell~~aDiV~l~~P~t~  223 (331)
                      ..+|+|||+|.||..+|..|...|.+|.+|+|+++.      .+           .....++.+ ++.+|+|++++| +.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk-~~   91 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIP-VQ   91 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSC-GG
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECC-HH
Confidence            358999999999999999999999999999997543      11           233457778 889999999999 45


Q ss_pred             hhhhhccHHHHhcCC-CCcEEEEcCCCC
Q 020073          224 QTRRMINREVMLALG-KEGIIVNVGRGA  250 (331)
Q Consensus       224 ~t~~li~~~~l~~mk-~ga~lIn~srg~  250 (331)
                      .++.++     ..++ ++.++|+++-|-
T Consensus        92 ~~~~v~-----~~l~~~~~~vv~~~nGi  114 (335)
T 1z82_A           92 YIREHL-----LRLPVKPSMVLNLSKGI  114 (335)
T ss_dssp             GHHHHH-----TTCSSCCSEEEECCCCC
T ss_pred             HHHHHH-----HHhCcCCCEEEEEeCCC
Confidence            555554     2233 788999998773

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.29  E-value=2e-06  Score=79.89  Aligned_cols=104  Identities=14%  Similarity=0.132  Sum_probs=74.3

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-------CCc---cc--cCCHHhhhcCCCEEEEeccCChh
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-------VPY---AF--YSNVCELAANSDALIICCALTDQ  224 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------~~~---~~--~~~l~ell~~aDiV~l~~P~t~~  224 (331)
                      ++.|++++|+|.|.+|++++..|...|+ +|++++|+.++       .+.   ..  ..++.+.+.++|+|+.++|....
T Consensus       138 ~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~  217 (297)
T 2egg_A          138 TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMH  217 (297)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCS
T ss_pred             CCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCC
Confidence            4678999999999999999999999998 99999998643       111   11  13466778999999999997642


Q ss_pred             hh--h-hccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 020073          225 TR--R-MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       225 t~--~-li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i  266 (331)
                      ..  . .++   .+.++++.+++|++-.....  .|.+..++..+
T Consensus       218 ~~~~~~~i~---~~~l~~~~~v~D~~y~P~~T--~ll~~A~~~G~  257 (297)
T 2egg_A          218 PRVEVQPLS---LERLRPGVIVSDIIYNPLET--KWLKEAKARGA  257 (297)
T ss_dssp             SCCSCCSSC---CTTCCTTCEEEECCCSSSSC--HHHHHHHHTTC
T ss_pred             CCCCCCCCC---HHHcCCCCEEEEcCCCCCCC--HHHHHHHHCcC
Confidence            11  1 233   24478899999998854332  36565555444

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.22  E-value=1.6e-06  Score=89.97  Aligned_cols=111  Identities=18%  Similarity=0.094  Sum_probs=76.7

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------------CC-------------ccccCCHHhhhc
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------------VP-------------YAFYSNVCELAA  210 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------------~~-------------~~~~~~l~ell~  210 (331)
                      -++|+|||+|.||..+|..+...|++|+++|++++.                 .+             .....++ +.++
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~  390 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFR  390 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGT
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHC
Confidence            368999999999999999999999999999987532                 00             0112355 5789


Q ss_pred             CCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCC
Q 020073          211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE  275 (331)
Q Consensus       211 ~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~  275 (331)
                      +||+|+.++|.+.+.+.-+-++..+.++++++++..+.+  +....+.+.+... -...++..|.
T Consensus       391 ~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~p-~~~iG~hf~~  452 (725)
T 2wtb_A          391 DVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST--IDLNKIGERTKSQ-DRIVGAHFFS  452 (725)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHTTTCSCT-TTEEEEEECS
T ss_pred             CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHHhcCC-CCEEEecCCC
Confidence            999999999988765544445566678999988654433  2334455544321 1235666665

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=98.18  E-value=1.3e-06  Score=83.88  Aligned_cols=83  Identities=20%  Similarity=0.227  Sum_probs=70.3

Q ss_pred             CCceEEEEec-ChHHHHHHHHHhhCCC---EEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073          160 GGKRVGIVGL-GNIGLQVAKRLQAFGC---NVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML  235 (331)
Q Consensus       160 ~g~~vgIiG~-G~IG~~~A~~l~~~G~---~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~  235 (331)
                      ...+|.|||. |..|+..++.++++|+   +|.++|++....+..    + +.+.++|+||.|+......-.+|+++.++
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~----~-~~i~~aDivIn~vlig~~aP~Lvt~e~v~  287 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGP----F-DEIPQADIFINCIYLSKPIAPFTNMEKLN  287 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSC----C-THHHHSSEEEECCCCCSSCCCSCCHHHHC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCc----h-hhHhhCCEEEECcCcCCCCCcccCHHHHh
Confidence            3568999999 9999999999999998   899999865222221    1 34669999999999877777899999999


Q ss_pred             cC-CCCcEEEEcC
Q 020073          236 AL-GKEGIIVNVG  247 (331)
Q Consensus       236 ~m-k~ga~lIn~s  247 (331)
                      .| |+|+++||+|
T Consensus       288 ~m~k~gsVIVDVA  300 (394)
T 2qrj_A          288 NPNRRLRTVVDVS  300 (394)
T ss_dssp             CTTCCCCEEEETT
T ss_pred             cCcCCCeEEEEEe
Confidence            99 9999999998

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.17  E-value=3.9e-06  Score=76.91  Aligned_cols=101  Identities=15%  Similarity=0.060  Sum_probs=68.9

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC-Cc----cccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV-PY----AFYSNVCELAANSDALIICCALTDQTRRMINREVML  235 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-~~----~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~  235 (331)
                      |+++.|+|.|.+|++++..|...|.+|++++|+.++. ..    ....+++++ .++|+|+.++|........++.+.+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~~~~~l-~~~DiVInaTp~Gm~~~~~l~~~~l~  196 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPK-SAFDLIINATSASLHNELPLNKEVLK  196 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEESSCCS-SCCSEEEECCTTCCCCSCSSCHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEecHHHh-ccCCEEEEcccCCCCCCCCCChHHHH
Confidence            7899999999999999999999999999999998761 10    011133333 38999999999763322235555332


Q ss_pred             -cCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073          236 -ALGKEGIIVNVGRGAVIDENEMVRCLVRG  264 (331)
Q Consensus       236 -~mk~ga~lIn~srg~~vd~~al~~aL~~~  264 (331)
                       .++++.+++|+....  ...-+..|-+.|
T Consensus       197 ~~l~~~~~v~D~vY~P--~T~ll~~A~~~G  224 (269)
T 3phh_A          197 GYFKEGKLAYDLAYGF--LTPFLSLAKELK  224 (269)
T ss_dssp             HHHHHCSEEEESCCSS--CCHHHHHHHHTT
T ss_pred             hhCCCCCEEEEeCCCC--chHHHHHHHHCc
Confidence             467788888888776  333333344443

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.14  E-value=7.5e-06  Score=79.27  Aligned_cols=89  Identities=22%  Similarity=0.310  Sum_probs=70.4

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC-----C-------CCccccCCHHhhhcCCCEEEEeccCChhh
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK-----P-------VPYAFYSNVCELAANSDALIICCALTDQT  225 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~-----~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t  225 (331)
                      -|+||+|+|||+|+-|.+-|..|+..|.+|++--|...     +       .+.. ..+..|+.++||+|++.+|...+.
T Consensus        34 ~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~-v~~~~eA~~~ADvV~~L~PD~~q~  112 (491)
T 3ulk_A           34 YLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFK-VGTYEELIPQADLVINLTPDKQHS  112 (491)
T ss_dssp             GGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCE-EEEHHHHGGGCSEEEECSCGGGHH
T ss_pred             HHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCE-ecCHHHHHHhCCEEEEeCChhhHH
Confidence            48999999999999999999999999999987655211     1       2332 357999999999999999965443


Q ss_pred             hhhccHHHHhcCCCCcEEEEcCCCC
Q 020073          226 RRMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       226 ~~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                      . +. ++....||+|+.|. .|+|=
T Consensus       113 ~-vy-~~I~p~lk~G~~L~-faHGF  134 (491)
T 3ulk_A          113 D-VV-RTVQPLMKDGAALG-YSHGF  134 (491)
T ss_dssp             H-HH-HHHGGGSCTTCEEE-ESSCH
T ss_pred             H-HH-HHHHhhCCCCCEEE-ecCcc
Confidence            3 44 46889999999876 56765

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.13  E-value=1.2e-05  Score=75.14  Aligned_cols=81  Identities=20%  Similarity=0.305  Sum_probs=64.3

Q ss_pred             CceEEEEecChHHHHHHHHHhh-CCC-EEEEECCCCCC----C------Cc--cccCCHHhhhcCCCEEEEeccCChhhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQA-FGC-NVLYNSRSKKP----V------PY--AFYSNVCELAANSDALIICCALTDQTR  226 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~----~------~~--~~~~~l~ell~~aDiV~l~~P~t~~t~  226 (331)
                      .++++|||.|.+|+.+++.+.. ++. +|.+|+|+ +.    .      +.  ... ++++++++||+|++|+|..   .
T Consensus       121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~---~  195 (313)
T 3hdj_A          121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRST---T  195 (313)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCS---S
T ss_pred             CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCC---C
Confidence            5789999999999999999875 444 79999999 43    1      11  223 8999999999999999864   3


Q ss_pred             hhccHHHHhcCCCCcEEEEcCCC
Q 020073          227 RMINREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~srg  249 (331)
                      .++..   +.+++|+.++++|.-
T Consensus       196 pvl~~---~~l~~G~~V~~vGs~  215 (313)
T 3hdj_A          196 PLFAG---QALRAGAFVGAIGSS  215 (313)
T ss_dssp             CSSCG---GGCCTTCEEEECCCS
T ss_pred             cccCH---HHcCCCcEEEECCCC
Confidence            56654   358999999999864

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.10  E-value=1e-05  Score=66.72  Aligned_cols=100  Identities=17%  Similarity=0.175  Sum_probs=74.3

Q ss_pred             CceEEEEec----ChHHHHHHHHHhhCCCEEEEECCC--CCC-CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHH
Q 020073          161 GKRVGIVGL----GNIGLQVAKRLQAFGCNVLYNSRS--KKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       161 g~~vgIiG~----G~IG~~~A~~l~~~G~~V~~~~~~--~~~-~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      -++|+|||.    |++|..+++.++..|++|+..++.  ... .+...+.+++++-...|++++++|. +....+++ +.
T Consensus        13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~~-~~   90 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRPP-SALMDHLP-EV   90 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTHH-HH
T ss_pred             CCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHHH-HH
Confidence            468999999    899999999999999997777776  333 4555577899999999999999996 56666663 33


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      .+ ...++++++.+-    .++++.+..++..++
T Consensus        91 ~~-~gi~~i~~~~g~----~~~~~~~~a~~~Gir  119 (140)
T 1iuk_A           91 LA-LRPGLVWLQSGI----RHPEFEKALKEAGIP  119 (140)
T ss_dssp             HH-HCCSCEEECTTC----CCHHHHHHHHHTTCC
T ss_pred             HH-cCCCEEEEcCCc----CHHHHHHHHHHcCCE
Confidence            33 334466665432    257788888877665

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.10  E-value=1.9e-06  Score=73.59  Aligned_cols=88  Identities=16%  Similarity=0.184  Sum_probs=62.9

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhC-CCEEEEECCCCCC------CCccc----cCC---HHhh--hcCCCEEEEecc
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAF-GCNVLYNSRSKKP------VPYAF----YSN---VCEL--AANSDALIICCA  220 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~-G~~V~~~~~~~~~------~~~~~----~~~---l~el--l~~aDiV~l~~P  220 (331)
                      .++.+++++|+|+|.+|+.+|+.|+.. |.+|++++++++.      .+...    ..+   +.++  +.++|+|++++|
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~  114 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMP  114 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence            357788999999999999999999998 9999999987643      12211    112   4455  678999999998


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEc
Q 020073          221 LTDQTRRMINREVMLALGKEGIIVNV  246 (331)
Q Consensus       221 ~t~~t~~li~~~~l~~mk~ga~lIn~  246 (331)
                      ....+..++  ..+..+.+...+|..
T Consensus       115 ~~~~~~~~~--~~~~~~~~~~~ii~~  138 (183)
T 3c85_A          115 HHQGNQTAL--EQLQRRNYKGQIAAI  138 (183)
T ss_dssp             SHHHHHHHH--HHHHHTTCCSEEEEE
T ss_pred             ChHHHHHHH--HHHHHHCCCCEEEEE
Confidence            765554443  345556656666654

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.09  E-value=1.6e-05  Score=65.86  Aligned_cols=101  Identities=13%  Similarity=0.123  Sum_probs=74.9

Q ss_pred             CceEEEEec----ChHHHHHHHHHhhCCCEEEEECCCCCC-CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073          161 GKRVGIVGL----GNIGLQVAKRLQAFGCNVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML  235 (331)
Q Consensus       161 g~~vgIiG~----G~IG~~~A~~l~~~G~~V~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~  235 (331)
                      -++|+|||.    |.+|..+++.|+..|++|+..++.... .+...+.+++++....|++++++|. +....++. +..+
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv~-~~~~   99 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVE-QAIK   99 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHH-HHHH
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHH-HHHH
Confidence            578999999    799999999999999998777776433 4555677899999899999999986 55666663 3333


Q ss_pred             cCCCCcEEEEcCCCCccCHHHHHHHHHhCCceE
Q 020073          236 ALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAG  268 (331)
Q Consensus       236 ~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~g  268 (331)
                       ...++++++.+  .  .++.+.++.++..+.-
T Consensus       100 -~gi~~i~~~~g--~--~~~~l~~~a~~~Gi~v  127 (144)
T 2d59_A          100 -KGAKVVWFQYN--T--YNREASKKADEAGLII  127 (144)
T ss_dssp             -HTCSEEEECTT--C--CCHHHHHHHHHTTCEE
T ss_pred             -cCCCEEEECCC--c--hHHHHHHHHHHcCCEE
Confidence             33346665533  2  3778888888877663

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=98.04  E-value=6.9e-07  Score=81.84  Aligned_cols=81  Identities=12%  Similarity=0.036  Sum_probs=54.7

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEE-EEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNV-LYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V-~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      .+|||||+|.||+.+|+.|... ++| .++++++..       .+. ...+++++++++|+|++|+|... ...     .
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~-~~~-----v   74 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRY-IKT-----V   74 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTT-HHH-----H
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHH-HHH-----H
Confidence            4799999999999999999876 888 489987643       122 34577788899999999999653 233     3


Q ss_pred             HhcC-CCCcEEEEcCCCC
Q 020073          234 MLAL-GKEGIIVNVGRGA  250 (331)
Q Consensus       234 l~~m-k~ga~lIn~srg~  250 (331)
                      +..+ +++.++|+++-+.
T Consensus        75 ~~~l~~~~~ivi~~s~~~   92 (276)
T 2i76_A           75 ANHLNLGDAVLVHCSGFL   92 (276)
T ss_dssp             HTTTCCSSCCEEECCSSS
T ss_pred             HHHhccCCCEEEECCCCC
Confidence            3334 6889999998553

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.03  E-value=2e-05  Score=75.42  Aligned_cols=90  Identities=18%  Similarity=0.293  Sum_probs=74.1

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC----CCCC----------------CccccCCHHhhhcCCCE
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS----KKPV----------------PYAFYSNVCELAANSDA  214 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~----~~~~----------------~~~~~~~l~ell~~aDi  214 (331)
                      |+++.+.+|.|+|.|..|..+|+.+.+.|. +|+++|++    ..+.                ......+|.++++++|+
T Consensus       187 g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADV  266 (388)
T 1vl6_A          187 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADF  266 (388)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSE
T ss_pred             CCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCE
Confidence            346889999999999999999999999999 89999987    3211                01113579999999999


Q ss_pred             EEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073          215 LIICCALTDQTRRMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       215 V~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                      ++-+.   .  .++++++.++.|+++++++.+|+..
T Consensus       267 lIG~S---a--p~l~t~emVk~Ma~~pIIfalSNPt  297 (388)
T 1vl6_A          267 FIGVS---R--GNILKPEWIKKMSRKPVIFALANPV  297 (388)
T ss_dssp             EEECS---C--SSCSCHHHHTTSCSSCEEEECCSSS
T ss_pred             EEEeC---C--CCccCHHHHHhcCCCCEEEEcCCCC
Confidence            88773   1  3899999999999999999999855

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.01  E-value=1.5e-05  Score=74.50  Aligned_cols=103  Identities=21%  Similarity=0.244  Sum_probs=74.4

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----CC---------------ccccCCHHhhhcCCCEEEEeccCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----VP---------------YAFYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~~---------------~~~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      ++|+|||.|.||..+|..|...|.+|.+++|+...    .+               .....+++++.+.+|+|++++|..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~~   82 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDYETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKVV   82 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTHHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChHHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCCC
Confidence            58999999999999999999999999999987521    01               111245667767899999999965


Q ss_pred             hhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          223 DQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       223 ~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      . +...+ +..-..+++++++|.+.-| +-.++.+.+.+...++.
T Consensus        83 ~-~~~~l-~~l~~~l~~~t~Iv~~~nG-i~~~~~l~~~~~~~~vl  124 (320)
T 3i83_A           83 E-GADRV-GLLRDAVAPDTGIVLISNG-IDIEPEVAAAFPDNEVI  124 (320)
T ss_dssp             T-TCCHH-HHHTTSCCTTCEEEEECSS-SSCSHHHHHHSTTSCEE
T ss_pred             C-hHHHH-HHHHhhcCCCCEEEEeCCC-CChHHHHHHHCCCCcEE
Confidence            3 34443 3344567888999988766 33356777777665543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.99  E-value=1.4e-05  Score=66.48  Aligned_cols=93  Identities=12%  Similarity=0.036  Sum_probs=60.9

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----C---Cccc----cCC---HHhh-hcCCCEEEEecc
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----V---PYAF----YSN---VCEL-AANSDALIICCA  220 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~---~~~~----~~~---l~el-l~~aDiV~l~~P  220 (331)
                      .....++++.|+|+|.+|+.+|+.|+..|.+|+++++++..    .   +...    ..+   +.++ +..+|+|++++|
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~   93 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTN   93 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSS
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeC
Confidence            34577899999999999999999999999999999987543    1   1111    111   3333 678999999998


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073          221 LTDQTRRMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       221 ~t~~t~~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                      .......+  ......+.+...+|-..++.
T Consensus        94 ~~~~~~~~--~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           94 DDSTNFFI--SMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             CHHHHHHH--HHHHHHTSCCSEEEEECSSG
T ss_pred             CcHHHHHH--HHHHHHHCCCCeEEEEECCH
Confidence            65433322  22344445555666555554

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.95  E-value=7.8e-06  Score=76.85  Aligned_cols=105  Identities=16%  Similarity=0.214  Sum_probs=74.5

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCc-------------cccCCHHhhhcCCCEEEEeccCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPY-------------AFYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~-------------~~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      .++|+|||+|.||..+|..|...|.+|.+++|....     .+.             ....++++ +..+|+|++++|. 
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~-   80 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA-   80 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc-
Confidence            468999999999999999999999999999985211     111             11246666 5889999999985 


Q ss_pred             hhhhhhccHHHHhcCCCCcEEEEcCCCC------------------ccCHHHHHHHHHhCCceE
Q 020073          223 DQTRRMINREVMLALGKEGIIVNVGRGA------------------VIDENEMVRCLVRGEIAG  268 (331)
Q Consensus       223 ~~t~~li~~~~l~~mk~ga~lIn~srg~------------------~vd~~al~~aL~~~~i~g  268 (331)
                      ..+...+ ++....+++++++|.+.-|=                  +-.++.+.+.+...++.+
T Consensus        81 ~~~~~~~-~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~  143 (335)
T 3ghy_A           81 PALESVA-AGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLG  143 (335)
T ss_dssp             HHHHHHH-GGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEE
T ss_pred             hhHHHHH-HHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEE
Confidence            4555544 22334567899999998882                  234556777776656543

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.94  E-value=4.2e-06  Score=77.37  Aligned_cols=100  Identities=18%  Similarity=0.221  Sum_probs=68.9

Q ss_pred             ceEEEEecChHHHHHHHHHhhC-----C-CEEEEECCCCCC-----C--CccccC-------------CHHhhhcCCCEE
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF-----G-CNVLYNSRSKKP-----V--PYAFYS-------------NVCELAANSDAL  215 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~-----G-~~V~~~~~~~~~-----~--~~~~~~-------------~l~ell~~aDiV  215 (331)
                      ++|+|||+|.||..+|..|...     | .+|++++| .+.     .  +.....             +..+.+..+|+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   87 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI   87 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence            4799999999999999999887     8 99999998 332     1  111110             223467899999


Q ss_pred             EEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073          216 IICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGE  265 (331)
Q Consensus       216 ~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~  265 (331)
                      ++|+|... +...+ ++....++++.++|++.-| +-.++.+.+.+...+
T Consensus        88 il~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG-~~~~~~l~~~l~~~~  134 (317)
T 2qyt_A           88 LFCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG-ADIAERMRTYLPDTV  134 (317)
T ss_dssp             EECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS-SSHHHHHTTTSCTTT
T ss_pred             EEecCccc-HHHHH-HHHHhhcCCCCEEEEccCC-CCcHHHHHHHCCCCc
Confidence            99999654 45444 3344557788999998766 322355666664433

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.92  E-value=1.1e-05  Score=74.40  Aligned_cols=90  Identities=16%  Similarity=0.157  Sum_probs=65.1

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-------CCc---cccCCHHhhhcCCCEEEEeccCChhhh
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-------VPY---AFYSNVCELAANSDALIICCALTDQTR  226 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------~~~---~~~~~l~ell~~aDiV~l~~P~t~~t~  226 (331)
                      ++.|+++.|+|.|.+|++++..|...|+ +|++++|+.++       ...   ....+++++..++|+|+.++|......
T Consensus       123 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~~~  202 (281)
T 3o8q_A          123 LLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGE  202 (281)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC---
T ss_pred             CccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCCCC
Confidence            5789999999999999999999999997 99999998654       010   112345666688999999999763221


Q ss_pred             -hhccHHHHhcCCCCcEEEEcCCCC
Q 020073          227 -RMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       227 -~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                       ..++.   +.++++++++++.-..
T Consensus       203 ~~~l~~---~~l~~~~~V~DlvY~P  224 (281)
T 3o8q_A          203 LPAIDP---VIFSSRSVCYDMMYGK  224 (281)
T ss_dssp             -CSCCG---GGEEEEEEEEESCCCS
T ss_pred             CCCCCH---HHhCcCCEEEEecCCC
Confidence             12332   3467788888887654

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.92  E-value=1.3e-05  Score=76.21  Aligned_cols=85  Identities=15%  Similarity=0.133  Sum_probs=65.5

Q ss_pred             CCceEEEEecChHHHHHHHHHh-hCC-CEEEEECCCCCC-------C----C--ccccCCHHhhhcCCCEEEEeccCChh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQ-AFG-CNVLYNSRSKKP-------V----P--YAFYSNVCELAANSDALIICCALTDQ  224 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~-~~G-~~V~~~~~~~~~-------~----~--~~~~~~l~ell~~aDiV~l~~P~t~~  224 (331)
                      ..++++|||+|.+|+.+++.+. ..+ .+|.+|+|++++       .    +  ...+.+++++++++|+|++|+|... 
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~-  206 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA-  206 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS-
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC-
Confidence            4578999999999999998875 344 489999998654       1    2  2235689999999999999999762 


Q ss_pred             hhhhccHHHHhcCCCCcEEEEcCC
Q 020073          225 TRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       225 t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      ...++..   +.+++|..+++++.
T Consensus       207 ~~pvl~~---~~l~~G~~V~~vgs  227 (350)
T 1x7d_A          207 YATIITP---DMLEPGMHLNAVGG  227 (350)
T ss_dssp             EEEEECG---GGCCTTCEEEECSC
T ss_pred             CCceecH---HHcCCCCEEEECCC
Confidence            3445553   45799999999985

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.92  E-value=1.3e-05  Score=64.78  Aligned_cols=90  Identities=18%  Similarity=0.231  Sum_probs=57.5

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccc----cCC---HHhh-hcCCCEEEEeccCChh
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAF----YSN---VCEL-AANSDALIICCALTDQ  224 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~----~~~---l~el-l~~aDiV~l~~P~t~~  224 (331)
                      +.+++++|+|+|.+|+.+++.|...|.+|++++++...      .+...    ..+   +.++ +.++|+|+.++|...+
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~   83 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ   83 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHH
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchH
Confidence            56788999999999999999999999999999886432      11111    112   3333 6789999999986523


Q ss_pred             hhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073          225 TRRMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       225 t~~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                      +.-.+ ......+.+. .+|-.+.+.
T Consensus        84 ~~~~~-~~~~~~~~~~-~ii~~~~~~  107 (144)
T 2hmt_A           84 ASTLT-TLLLKELDIP-NIWVKAQNY  107 (144)
T ss_dssp             HHHHH-HHHHHHTTCS-EEEEECCSH
T ss_pred             HHHHH-HHHHHHcCCC-eEEEEeCCH
Confidence            22122 3334456665 445444443

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.90  E-value=1.9e-05  Score=73.68  Aligned_cols=99  Identities=19%  Similarity=0.306  Sum_probs=68.9

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CC-------------ccccCCHHhhhcCCCEEEEec
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VP-------------YAFYSNVCELAANSDALIICC  219 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~-------------~~~~~~l~ell~~aDiV~l~~  219 (331)
                      ...++|+|||.|.||..+|..|...|.+|.++ ++++.      .+             .....++++ +..+|+|++++
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav   94 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV   94 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc
Confidence            34678999999999999999999999999999 55432      01             011234544 58999999999


Q ss_pred             cCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 020073          220 ALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLV  262 (331)
Q Consensus       220 P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~  262 (331)
                      |.. .++..+ ++.-..+++++++|.+.-|= -.++.+.+.+.
T Consensus        95 k~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi-~~~~~l~~~~~  134 (318)
T 3hwr_A           95 KST-DTQSAA-LAMKPALAKSALVLSLQNGV-ENADTLRSLLE  134 (318)
T ss_dssp             CGG-GHHHHH-HHHTTTSCTTCEEEEECSSS-SHHHHHHHHCC
T ss_pred             ccc-cHHHHH-HHHHHhcCCCCEEEEeCCCC-CcHHHHHHHcC
Confidence            965 556555 34445678899999987763 22356666664

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.90  E-value=8.9e-06  Score=66.61  Aligned_cols=82  Identities=15%  Similarity=0.110  Sum_probs=57.3

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccc----cCC---HHhh-hcCCCEEEEeccCChhhhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAF----YSN---VCEL-AANSDALIICCALTDQTRR  227 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~----~~~---l~el-l~~aDiV~l~~P~t~~t~~  227 (331)
                      .++.|+|+|.+|+.+|+.|+..|.+|++++++++.      .+...    ..+   +.++ +.++|+|++++|....+..
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~~   87 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGE   87 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHHH
Confidence            46999999999999999999999999999987653      12211    111   3332 5789999999997765544


Q ss_pred             hccHHHHhcCCCCcEEEE
Q 020073          228 MINREVMLALGKEGIIVN  245 (331)
Q Consensus       228 li~~~~l~~mk~ga~lIn  245 (331)
                      ++  ..+..+.++..+|-
T Consensus        88 ~~--~~a~~~~~~~~iia  103 (140)
T 3fwz_A           88 IV--ASARAKNPDIEIIA  103 (140)
T ss_dssp             HH--HHHHHHCSSSEEEE
T ss_pred             HH--HHHHHHCCCCeEEE
Confidence            43  23444555555553

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=97.89  E-value=3e-05  Score=72.70  Aligned_cols=132  Identities=14%  Similarity=0.093  Sum_probs=88.5

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC---------------------CC----------ccccCCHHhhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP---------------------VP----------YAFYSNVCELA  209 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---------------------~~----------~~~~~~l~ell  209 (331)
                      -.+|+|||.|.||+.+|..+...|++|+.+|++++.                     .+          .....++.+++
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~   85 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAV   85 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHT
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHh
Confidence            468999999999999999999999999999987532                     00          01235788999


Q ss_pred             cCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCc
Q 020073          210 ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDN  289 (331)
Q Consensus       210 ~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~n  289 (331)
                      +.||+|+=++|-+-+.+.-+-++.=+.++++++|-.-+++  +.-..+.+++.. .=+..++=-|.+-|     +..+=-
T Consensus        86 ~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~~-p~r~ig~HffNP~~-----~m~LVE  157 (319)
T 3ado_A           86 EGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLAH-VKQCIVAHPVNPPY-----YIPLVE  157 (319)
T ss_dssp             TTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCTT-GGGEEEEEECSSTT-----TCCEEE
T ss_pred             ccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhccC-CCcEEEecCCCCcc-----ccchHH
Confidence            9999999999998887766656665668999987655444  445666665543 22334443333222     222224


Q ss_pred             eEEcCCCCCCc
Q 020073          290 VVLQPHRAVFT  300 (331)
Q Consensus       290 vilTPH~a~~t  300 (331)
                      |+-+|+.+..|
T Consensus       158 iv~g~~Ts~~~  168 (319)
T 3ado_A          158 LVPHPETSPAT  168 (319)
T ss_dssp             EEECTTCCHHH
T ss_pred             hcCCCCCcHHH
Confidence            56666554433

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.89  E-value=9.2e-06  Score=63.42  Aligned_cols=83  Identities=17%  Similarity=0.131  Sum_probs=57.7

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCC-CEEEEECCCCCC------CCcc-------ccCCHHhhhcCCCEEEEeccCChhh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFG-CNVLYNSRSKKP------VPYA-------FYSNVCELAANSDALIICCALTDQT  225 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~------~~~~-------~~~~l~ell~~aDiV~l~~P~t~~t  225 (331)
                      .+++++|+|.|.||+.+++.|...| .+|++++|++..      .+..       ...++.++++++|+|+.++|... +
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~-~   82 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFL-T   82 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGG-H
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchh-h
Confidence            4679999999999999999999999 899999987643      1111       11346677889999999987442 2


Q ss_pred             hhhccHHHHhcCCCCcEEEEcC
Q 020073          226 RRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       226 ~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      ..++..    ..+.|...++.+
T Consensus        83 ~~~~~~----~~~~g~~~~~~~  100 (118)
T 3ic5_A           83 PIIAKA----AKAAGAHYFDLT  100 (118)
T ss_dssp             HHHHHH----HHHTTCEEECCC
T ss_pred             HHHHHH----HHHhCCCEEEec
Confidence            222221    124566667664

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.86  E-value=8e-05  Score=69.17  Aligned_cols=104  Identities=20%  Similarity=0.219  Sum_probs=73.2

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----CCc--------------cccCCHHhhhcCCCEEEEeccCCh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----VPY--------------AFYSNVCELAANSDALIICCALTD  223 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~~~--------------~~~~~l~ell~~aDiV~l~~P~t~  223 (331)
                      ++|+|||.|.||..+|..|...|.+|.+++|+...    .+.              ....+.++ +..+|+|++++|.. 
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~~-   80 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRDYEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKTF-   80 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTTHHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCGG-
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCcHHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCCC-
Confidence            57999999999999999999999999999987521    110              01234544 67899999999854 


Q ss_pred             hhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEE
Q 020073          224 QTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGA  269 (331)
Q Consensus       224 ~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga  269 (331)
                      .+...+ +..-..+++++++|.+.-| +-.++.+.+.+...++.++
T Consensus        81 ~~~~~l-~~l~~~l~~~~~iv~l~nG-i~~~~~l~~~~~~~~v~~~  124 (312)
T 3hn2_A           81 ANSRYE-ELIRPLVEEGTQILTLQNG-LGNEEALATLFGAERIIGG  124 (312)
T ss_dssp             GGGGHH-HHHGGGCCTTCEEEECCSS-SSHHHHHHHHTCGGGEEEE
T ss_pred             CcHHHH-HHHHhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence            344444 3344567889999998766 2235677777766565443

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.86  E-value=1.6e-05  Score=72.78  Aligned_cols=66  Identities=15%  Similarity=0.050  Sum_probs=49.1

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC---C----Cc---cccCCHHhhhc-CCCEEEEeccCCh
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP---V----PY---AFYSNVCELAA-NSDALIICCALTD  223 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---~----~~---~~~~~l~ell~-~aDiV~l~~P~t~  223 (331)
                      ++.+++++|+|.|.+|++++..|...|.+|++++|+.++   .    +.   ....+++++.+ ++|+|+.++|...
T Consensus       116 ~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~  192 (272)
T 1p77_A          116 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGL  192 (272)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC--
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCC
Confidence            467899999999999999999999999999999998643   0    10   01123344434 8999999998653

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.86  E-value=2.5e-05  Score=62.80  Aligned_cols=84  Identities=17%  Similarity=0.282  Sum_probs=56.7

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccc----cCCH---Hhh-hcCCCEEEEeccCChhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAF----YSNV---CEL-AANSDALIICCALTDQT  225 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~----~~~l---~el-l~~aDiV~l~~P~t~~t  225 (331)
                      +++++|+|+|.+|+.+|+.|...|.+|++++++++.       .+...    ..+.   .+. +.++|+|++++|.....
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~   83 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN   83 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence            468999999999999999999999999999986543       12111    1122   222 67899999999865332


Q ss_pred             hhhccHHHHhcCCCCcEEEEc
Q 020073          226 RRMINREVMLALGKEGIIVNV  246 (331)
Q Consensus       226 ~~li~~~~l~~mk~ga~lIn~  246 (331)
                      .  .-......++++.+++-+
T Consensus        84 ~--~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           84 L--MSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             H--HHHHHHHHTTCCCEEEEC
T ss_pred             H--HHHHHHHHcCCCEEEEEe
Confidence            2  223344557777666544

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.83  E-value=2.8e-05  Score=72.96  Aligned_cols=80  Identities=15%  Similarity=0.184  Sum_probs=62.7

Q ss_pred             CCceEEEEecChHHHHHHHHHhh-CC-CEEEEECCCCCC-------C-----CccccCCHHhhhcCCCEEEEeccCChhh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQA-FG-CNVLYNSRSKKP-------V-----PYAFYSNVCELAANSDALIICCALTDQT  225 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~-~G-~~V~~~~~~~~~-------~-----~~~~~~~l~ell~~aDiV~l~~P~t~~t  225 (331)
                      ..++++|||+|.+|+.+++.+.. .+ -+|.+++|++++       .     ... +.++++++ ++|+|++|+|..   
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~---  198 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSR---  198 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCS---
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCC---
Confidence            35789999999999999999876 44 479999998654       0     123 56889999 999999999864   


Q ss_pred             hhhccHHHHhcCCCCcEEEEcC
Q 020073          226 RRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       226 ~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      ..++..   +.+++|..+++++
T Consensus       199 ~pv~~~---~~l~~G~~V~~ig  217 (322)
T 1omo_A          199 KPVVKA---EWVEEGTHINAIG  217 (322)
T ss_dssp             SCCBCG---GGCCTTCEEEECS
T ss_pred             CceecH---HHcCCCeEEEECC
Confidence            345543   4579999999995

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.80  E-value=5.3e-05  Score=69.15  Aligned_cols=89  Identities=16%  Similarity=0.102  Sum_probs=61.8

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCc---cccCCHHhhh-cCCCEEEEeccCChhhh
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPY---AFYSNVCELA-ANSDALIICCALTDQTR  226 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~---~~~~~l~ell-~~aDiV~l~~P~t~~t~  226 (331)
                      ++.|++++|+|.|.+|+++++.|...|.+|++++|+.++       .+.   ....+++++. .++|+|+.++|..... 
T Consensus       116 ~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~~-  194 (271)
T 1nyt_A          116 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISG-  194 (271)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGT-
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCCC-
Confidence            467899999999999999999999999999999998643       111   0112333443 5899999999865431 


Q ss_pred             hh--ccHHHHhcCCCCcEEEEcCCCC
Q 020073          227 RM--INREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       227 ~l--i~~~~l~~mk~ga~lIn~srg~  250 (331)
                      .+  +..+   .++++.+++|+.-..
T Consensus       195 ~~~~i~~~---~l~~~~~v~D~~y~p  217 (271)
T 1nyt_A          195 DIPAIPSS---LIHPGIYCYDMFYQK  217 (271)
T ss_dssp             CCCCCCGG---GCCTTCEEEESCCCS
T ss_pred             CCCCCCHH---HcCCCCEEEEeccCC
Confidence            11  2222   246777777776654

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.77  E-value=2.6e-05  Score=71.83  Aligned_cols=101  Identities=15%  Similarity=0.185  Sum_probs=69.2

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-----CC--ccccCCHHhhhcCCCEEEEeccCC--hhhh-
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-----VP--YAFYSNVCELAANSDALIICCALT--DQTR-  226 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-----~~--~~~~~~l~ell~~aDiV~l~~P~t--~~t~-  226 (331)
                      ++.|+++.|+|.|.+|++++..|...|+ +|++++|+.++     ..  ...+.++.+ + ++|+||.++|..  +... 
T Consensus       119 ~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~  196 (282)
T 3fbt_A          119 EIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGE  196 (282)
T ss_dssp             CCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTC
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCcc
Confidence            4789999999999999999999999999 89999998654     11  112234445 4 899999999874  2211 


Q ss_pred             hhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073          227 RMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG  264 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~  264 (331)
                      -.++.+.   ++++.+++++.-... ...-|.+|-+.|
T Consensus       197 ~pi~~~~---l~~~~~v~DlvY~P~-~T~ll~~A~~~G  230 (282)
T 3fbt_A          197 SPVDKEV---VAKFSSAVDLIYNPV-ETLFLKYARESG  230 (282)
T ss_dssp             CSSCHHH---HTTCSEEEESCCSSS-SCHHHHHHHHTT
T ss_pred             CCCCHHH---cCCCCEEEEEeeCCC-CCHHHHHHHHCc
Confidence            1255554   467888888875543 233333444444

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.76  E-value=2.5e-05  Score=63.53  Aligned_cols=63  Identities=21%  Similarity=0.241  Sum_probs=46.5

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccc----cCC---HHhh-hcCCCEEEEeccCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAF----YSN---VCEL-AANSDALIICCALT  222 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~----~~~---l~el-l~~aDiV~l~~P~t  222 (331)
                      .++++.|+|+|.+|+.+|+.|...|.+|++++++++.      .+...    ..+   +.++ +.++|+|++++|..
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~   81 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDD   81 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCH
Confidence            4578999999999999999999999999999987643      11110    112   2332 46899999999843

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.76  E-value=0.00012  Score=70.20  Aligned_cols=181  Identities=17%  Similarity=0.188  Sum_probs=115.5

Q ss_pred             HHhhC-CcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHH
Q 020073          101 ECRRR-GIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKR  179 (331)
Q Consensus       101 ~~~~~-gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~  179 (331)
                      ..++. +|++.|+ +.  .-+|=.+++.+++.+|-                    .|+.+...+|.|+|.|..|..+|+.
T Consensus       150 ~~r~~~~ipvf~D-Di--qGTa~V~lAall~al~l--------------------~g~~l~d~kVVi~GAGaAG~~iA~l  206 (398)
T 2a9f_A          150 RLIKECHIPVFHD-DQ--HGTAIVVLAAIFNSLKL--------------------LKKSLDEVSIVVNGGGSAGLSITRK  206 (398)
T ss_dssp             HHHHHCSSCEEEH-HH--HHHHHHHHHHHHHHHHT--------------------TTCCTTSCEEEEECCSHHHHHHHHH
T ss_pred             HhhhcCCcceecc-hh--hhHHHHHHHHHHHHHHH--------------------hCCCCCccEEEEECCCHHHHHHHHH
Confidence            34443 5888883 22  33455566666665541                    2456889999999999999999999


Q ss_pred             HhhCCC-EEEEECCCC-------CCC-----Cc-------cccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCC
Q 020073          180 LQAFGC-NVLYNSRSK-------KPV-----PY-------AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGK  239 (331)
Q Consensus       180 l~~~G~-~V~~~~~~~-------~~~-----~~-------~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~  239 (331)
                      +.++|. +|+.+|++.       ...     .+       ....+|.|+++.+|+++-+-     +.++++++.++.|++
T Consensus       207 l~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~S-----apgl~T~EmVk~Ma~  281 (398)
T 2a9f_A          207 LLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGVS-----APGVLKAEWISKMAA  281 (398)
T ss_dssp             HHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEECC-----STTCCCHHHHHTSCS
T ss_pred             HHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEecC-----CCCCCCHHHHHhhCC
Confidence            999999 999998862       110     00       01346999999999888662     358999999999999


Q ss_pred             CcEEEEcCCCCccCHHHHHHHHHhCC-ceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHH-----HHHHHHHHHHH
Q 020073          240 EGIIVNVGRGAVIDENEMVRCLVRGE-IAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSE-----CFVDLCELAVG  313 (331)
Q Consensus       240 ga~lIn~srg~~vd~~al~~aL~~~~-i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~-----~~~~~~~~~~~  313 (331)
                      +++++.+|....  |-.-.++.+.|+ |.+-+-   ...|.      +..|+++-|=++-..-.     -.+.|...+++
T Consensus       282 ~pIIfalsNPt~--E~~pe~a~~~g~~i~atGr---s~~p~------Q~NN~~~FPgi~~Gal~~~a~~I~d~m~~aAa~  350 (398)
T 2a9f_A          282 RPVIFAMANPIP--EIYPDEALEAGAYIVGTGR---SDFPN------QINNVLAFPGIFRGALDARAKTITVEMQIAAAK  350 (398)
T ss_dssp             SCEEEECCSSSC--SSCHHHHHTTTCSEEEESC---TTSSS------BCCGGGTHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred             CCEEEECCCCCc--cCCHHHHHHhCCeEEEeCC---CCCCC------cCCceeEcchHHHHHHHcCCcCCCHHHHHHHHH
Confidence            999999999653  222222333355 443331   12221      23466666654422111     12455555666


Q ss_pred             HHHHHHc
Q 020073          314 NLEALFS  320 (331)
Q Consensus       314 nl~~~~~  320 (331)
                      -|-.+..
T Consensus       351 alA~~~~  357 (398)
T 2a9f_A          351 GIASLVP  357 (398)
T ss_dssp             HHHHTCS
T ss_pred             HHHhcCC
Confidence            6655543

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.76  E-value=5e-05  Score=69.97  Aligned_cols=90  Identities=16%  Similarity=0.127  Sum_probs=64.0

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC---C---------C--ccc--cCCHHhhhcCCCEEEEecc
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP---V---------P--YAF--YSNVCELAANSDALIICCA  220 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~---~---------~--~~~--~~~l~ell~~aDiV~l~~P  220 (331)
                      +++|+++.|+|.|.+|++++..|...|+ +|++++|+.++   .         .  ...  ..++.+.++++|+|+.++|
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp  203 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP  203 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSS
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCC
Confidence            4789999999999999999999999999 79999998654   0         0  111  2378888999999999998


Q ss_pred             CChhhh--hhccHHHHhcCCCCcEEEEcCCCC
Q 020073          221 LTDQTR--RMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       221 ~t~~t~--~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                      ..-...  -.++.   +.++++.+++++.-..
T Consensus       204 ~Gm~~~~~~pi~~---~~l~~~~~v~DlvY~P  232 (283)
T 3jyo_A          204 MGMPAHPGTAFDV---SCLTKDHWVGDVVYMP  232 (283)
T ss_dssp             TTSTTSCSCSSCG---GGCCTTCEEEECCCSS
T ss_pred             CCCCCCCCCCCCH---HHhCCCCEEEEecCCC
Confidence            642111  11222   3356666666665443

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.74  E-value=7e-05  Score=68.61  Aligned_cols=91  Identities=14%  Similarity=0.135  Sum_probs=62.3

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-C------Cc--cccCCHHhhh-cCCCEEEEeccCChhh
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-V------PY--AFYSNVCELA-ANSDALIICCALTDQT  225 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-~------~~--~~~~~l~ell-~~aDiV~l~~P~t~~t  225 (331)
                      .++.|+++.|+|.|.+|++++..|...|+ +|++++|+.++ .      ..  ....+++++- .++|+|+.++|..-..
T Consensus       116 ~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~~  195 (272)
T 3pwz_A          116 EPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLTA  195 (272)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGGT
T ss_pred             CCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCCC
Confidence            35789999999999999999999999997 99999998654 0      10  1112344443 7899999999865321


Q ss_pred             h-hhccHHHHhcCCCCcEEEEcCCCC
Q 020073          226 R-RMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       226 ~-~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                      . ..+..   +.++++.+++++.-..
T Consensus       196 ~~~~i~~---~~l~~~~~V~DlvY~P  218 (272)
T 3pwz_A          196 DLPPLPA---DVLGEAALAYELAYGK  218 (272)
T ss_dssp             CCCCCCG---GGGTTCSEEEESSCSC
T ss_pred             CCCCCCH---HHhCcCCEEEEeecCC
Confidence            1 12332   2346667777765543

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.74  E-value=4.5e-05  Score=73.29  Aligned_cols=83  Identities=12%  Similarity=0.090  Sum_probs=61.2

Q ss_pred             ceEEEEecChHHHHHHHHHhh-CCCEEEEEC---CCCCC-------CC---------c----------cccCCHHhhhcC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQA-FGCNVLYNS---RSKKP-------VP---------Y----------AFYSNVCELAAN  211 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~-~G~~V~~~~---~~~~~-------~~---------~----------~~~~~l~ell~~  211 (331)
                      ++|+|||.|.||..+|..|.. .|.+|.+++   ++++.       .+         .          ....+++++++.
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   82 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG   82 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence            479999999999999999977 499999999   53221       11         1          123467888999


Q ss_pred             CCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEc
Q 020073          212 SDALIICCALTDQTRRMINREVMLALGKEGIIVNV  246 (331)
Q Consensus       212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~  246 (331)
                      +|+|++++|... ...++ ++....+++++++|+.
T Consensus        83 aD~Vilav~~~~-~~~v~-~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           83 ADVVILTVPAFA-HEGYF-QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             CSEEEECSCGGG-HHHHH-HHHTTTCCTTCEEEET
T ss_pred             CCEEEEeCchHH-HHHHH-HHHHhhCCCCcEEEEc
Confidence            999999999553 44444 3344557888999985

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.70  E-value=9.9e-05  Score=72.10  Aligned_cols=132  Identities=17%  Similarity=0.193  Sum_probs=82.2

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------------CC-------------ccccCCHHhhhcCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------------VP-------------YAFYSNVCELAANSD  213 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~~-------------~~~~~~l~ell~~aD  213 (331)
                      +.++|+|||+|-+|..+|..+...|++|+++|.++++             .+             .....+.+++++.||
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad   99 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATD   99 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCC
Confidence            5679999999999999999999999999999976532             00             012356788899999


Q ss_pred             EEEEeccCChh------hhhhcc--HHHHhcCC---CCcEEEEcCCCCccCHHHH-HHHHHhCCceEEEee-cCCCCCCC
Q 020073          214 ALIICCALTDQ------TRRMIN--REVMLALG---KEGIIVNVGRGAVIDENEM-VRCLVRGEIAGAGLD-VFENEPYV  280 (331)
Q Consensus       214 iV~l~~P~t~~------t~~li~--~~~l~~mk---~ga~lIn~srg~~vd~~al-~~aL~~~~i~ga~lD-V~~~EP~~  280 (331)
                      ++++|+|....      ...+..  +..-+.|+   +|.++|.-|.-.+=-.+.+ ...|.+.. .|.-.+ +|.+|-+.
T Consensus       100 ~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~-~~~~f~v~~~PErl~  178 (444)
T 3vtf_A          100 ATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEA-GGVKFSVASNPEFLR  178 (444)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTT-TTCCCEEEECCCCCC
T ss_pred             ceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhC-CCCCceeecCccccc
Confidence            99999983211      112221  12223343   6789999888665333333 33444332 211122 24566543


Q ss_pred             CC----ccccCCceEE
Q 020073          281 PK----ELLELDNVVL  292 (331)
Q Consensus       281 ~~----~L~~~~nvil  292 (331)
                      +.    .+...++|++
T Consensus       179 eG~a~~d~~~~~riVi  194 (444)
T 3vtf_A          179 EGSALEDFFKPDRIVI  194 (444)
T ss_dssp             TTSHHHHHHSCSCEEE
T ss_pred             CCccccccccCCcEEE
Confidence            32    3667777763

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.69  E-value=1.5e-05  Score=73.42  Aligned_cols=90  Identities=20%  Similarity=0.156  Sum_probs=63.8

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCc---cccCCHHhhh-cCCCEEEEeccCChhhhhhccH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPY---AFYSNVCELA-ANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~---~~~~~l~ell-~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      ++|+|||.|.||..+|..|...|.+|.+++|+.+.      .+.   ....+..+.+ ..+|+|++++|.. .+...+ +
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~-~~~~~l-~   80 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTH-QLDAVI-P   80 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGG-GHHHHG-G
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCcc-CHHHHH-H
Confidence            57999999999999999999889999999987543      111   0112333444 8899999999854 455554 2


Q ss_pred             HHHhcCCCCcEEEEcCCCCccC
Q 020073          232 EVMLALGKEGIIVNVGRGAVID  253 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~srg~~vd  253 (331)
                      +.-..+++++++|.+.-|=-..
T Consensus        81 ~l~~~l~~~~~iv~~~nGi~~~  102 (294)
T 3g17_A           81 HLTYLAHEDTLIILAQNGYGQL  102 (294)
T ss_dssp             GHHHHEEEEEEEEECCSSCCCG
T ss_pred             HHHHhhCCCCEEEEeccCcccH
Confidence            2334467788999988775443

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.69  E-value=7.8e-05  Score=69.51  Aligned_cols=100  Identities=12%  Similarity=0.151  Sum_probs=66.7

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-C---------------C--ccccCCHHhhhcCCCEEEEeccC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-V---------------P--YAFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-~---------------~--~~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      .++|+|||.|.||..+|..+...|. +|+.+|++.+. .               .  .....++ +.+++||+|+++++.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~   82 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI   82 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            4689999999999999999988888 99999998653 0               0  0112456 788999999999832


Q ss_pred             C-----------hhhhhhcc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHHH
Q 020073          222 T-----------DQTRRMIN--REVMLALGKEGIIVNVGRGAVIDENEMVRCL  261 (331)
Q Consensus       222 t-----------~~t~~li~--~~~l~~mk~ga~lIn~srg~~vd~~al~~aL  261 (331)
                      .           +++..++.  .+.+....+++++|+++-..-+....+.+..
T Consensus        83 p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~~~  135 (317)
T 2ewd_A           83 PGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQKVS  135 (317)
T ss_dssp             SSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHhh
Confidence            1           11111110  1122233568999999876555555555554

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.68  E-value=8.4e-05  Score=71.49  Aligned_cols=87  Identities=13%  Similarity=0.118  Sum_probs=65.0

Q ss_pred             eEEEEecChHHHHHHHHHhhCC--------CEEEEECCCCCC------------------C-------CccccCCHHhhh
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFG--------CNVLYNSRSKKP------------------V-------PYAFYSNVCELA  209 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G--------~~V~~~~~~~~~------------------~-------~~~~~~~l~ell  209 (331)
                      +|+|||.|..|.++|..|...|        .+|..|.|.++.                  .       ......++.+++
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al  115 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV  115 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence            8999999999999999997644        358888765320                  0       112246899999


Q ss_pred             cCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCc
Q 020073          210 ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAV  251 (331)
Q Consensus       210 ~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~  251 (331)
                      +.||+|++++| +...+.++ ++.-..++++..+|+++-|=-
T Consensus       116 ~~ad~ii~avP-s~~~r~~l-~~l~~~~~~~~~iv~~~KGie  155 (391)
T 4fgw_A          116 KDVDIIVFNIP-HQFLPRIC-SQLKGHVDSHVRAISCLKGFE  155 (391)
T ss_dssp             TTCSEEEECSC-GGGHHHHH-HHHTTTSCTTCEEEECCCSCE
T ss_pred             hcCCEEEEECC-hhhhHHHH-HHhccccCCCceeEEeccccc
Confidence            99999999999 44555555 344456789999999998843

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.67  E-value=0.00014  Score=67.20  Aligned_cols=125  Identities=18%  Similarity=0.208  Sum_probs=85.8

Q ss_pred             CccCCCceEEEEecC-hHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGLG-NIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+...        ..+|.+.+++||+|+.++.-    .++|..+. 
T Consensus       174 ~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~--------T~dl~~~~~~ADIvV~A~G~----p~~i~~d~-  240 (303)
T 4b4u_A          174 NIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSR--------TQNLPELVKQADIIVGAVGK----AELIQKDW-  240 (303)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------CSSHHHHHHTCSEEEECSCS----TTCBCGGG-
T ss_pred             CCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCC--------CCCHHHHhhcCCeEEeccCC----CCcccccc-
Confidence            347999999999965 46999999999999999877542        25799999999999998742    35787765 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN  314 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n  314 (331)
                        .|+|+++||++--.           ..+++.   -||-..+      ..+. --.+||=-||.-.-+..-+.+.+++-
T Consensus       241 --vk~GavVIDVGin~-----------~~~~~v---GDVdf~~------v~~~-a~~iTPVPGGVGPmTiamLl~Ntv~a  297 (303)
T 4b4u_A          241 --IKQGAVVVDAGFHP-----------RDGGGV---GDIQLQG------IEEI-ASAYTPVPGGVGPMTITTLIRQTVEA  297 (303)
T ss_dssp             --SCTTCEEEECCCBC-----------CTTSCB---CSBCCTT------GGGT-CSEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred             --ccCCCEEEEeceec-----------CCCCeE---CCcCHHH------Hhhh-CcEECCCCCCchHHHHHHHHHHHHHH
Confidence              69999999998432           134442   4663322      1111 22589977776554444444444443


Q ss_pred             HH
Q 020073          315 LE  316 (331)
Q Consensus       315 l~  316 (331)
                      .+
T Consensus       298 a~  299 (303)
T 4b4u_A          298 AE  299 (303)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.62  E-value=5.1e-05  Score=71.02  Aligned_cols=91  Identities=14%  Similarity=0.095  Sum_probs=62.3

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCC---C-C----------C--c--cccCC---HHhhhcCCCEE
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKK---P-V----------P--Y--AFYSN---VCELAANSDAL  215 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~---~-~----------~--~--~~~~~---l~ell~~aDiV  215 (331)
                      +++|+++.|+|.|.+|++++..|...|+ +|++++|+.+   + .          +  .  ..+.+   +.+.+.++|+|
T Consensus       151 ~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiI  230 (315)
T 3tnl_A          151 DIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIF  230 (315)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred             CccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEE
Confidence            5789999999999999999999999999 8999999832   2 0          0  0  11222   45678899999


Q ss_pred             EEeccCChhh--hh-hccHHHHhcCCCCcEEEEcCCCC
Q 020073          216 IICCALTDQT--RR-MINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       216 ~l~~P~t~~t--~~-li~~~~l~~mk~ga~lIn~srg~  250 (331)
                      |.++|..-..  .. .+.  ..+.++++.+++++.-..
T Consensus       231 INaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~DlvY~P  266 (315)
T 3tnl_A          231 TNATGVGMKPFEGETLLP--SADMLRPELIVSDVVYKP  266 (315)
T ss_dssp             EECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESCCSS
T ss_pred             EECccCCCCCCCCCCCCC--cHHHcCCCCEEEEeccCC
Confidence            9999864211  11 120  123356677777766544

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.56  E-value=0.0002  Score=67.27  Aligned_cols=63  Identities=17%  Similarity=0.132  Sum_probs=50.1

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------CC----ccccCCHHhhhcCCCEEEEec--
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------VP----YAFYSNVCELAANSDALIICC--  219 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~~----~~~~~~l~ell~~aDiV~l~~--  219 (331)
                      .++|+|||.|.+|..+|..|...|+ +|..+|+..+.              ..    .....++++.+++||+|+++.  
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~   88 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGL   88 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCC
Confidence            3589999999999999999988887 99999988653              00    111357888999999999998  


Q ss_pred             cCCh
Q 020073          220 ALTD  223 (331)
Q Consensus       220 P~t~  223 (331)
                      |..+
T Consensus        89 p~~~   92 (331)
T 1pzg_A           89 TKVP   92 (331)
T ss_dssp             SSCT
T ss_pred             CCCC
Confidence            6543

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.53  E-value=0.00027  Score=65.55  Aligned_cols=101  Identities=20%  Similarity=0.241  Sum_probs=67.9

Q ss_pred             ceEEEEecChHHHH-HHHHHhh-CCCEEE-EECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073          162 KRVGIVGLGNIGLQ-VAKRLQA-FGCNVL-YNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       162 ~~vgIiG~G~IG~~-~A~~l~~-~G~~V~-~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      .+|||||+|.||+. +++.+.. -|++++ ++++++..       .+...+.+++++..+.|+|++++|.........  
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~--   83 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVS--   83 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHH--
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHHHHH--
Confidence            58999999999997 8888875 467876 78888765       123345677777678999999999654322221  


Q ss_pred             HHHhcCCCCc-EEEEc-CCCCccCHHHHHHHHHhCCce
Q 020073          232 EVMLALGKEG-IIVNV-GRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       232 ~~l~~mk~ga-~lIn~-srg~~vd~~al~~aL~~~~i~  267 (331)
                         ..++.|. +++.- .-..+-+.+.|.++.++..+.
T Consensus        84 ---~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~  118 (319)
T 1tlt_A           84 ---TLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT  118 (319)
T ss_dssp             ---HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             ---HHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence               2345564 66652 223344556688887776654

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.52  E-value=0.00031  Score=68.47  Aligned_cols=105  Identities=17%  Similarity=0.225  Sum_probs=77.7

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCC---EEEEEC----CC----CC-C---CC-c-----c------ccCCHHhh
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGC---NVLYNS----RS----KK-P---VP-Y-----A------FYSNVCEL  208 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~---~V~~~~----~~----~~-~---~~-~-----~------~~~~l~el  208 (331)
                      +.++.++++.|+|.|..|+++++.|...|.   +|+++|    |+    .. .   .. .     .      ...++.+.
T Consensus       181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~  260 (439)
T 2dvm_A          181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEA  260 (439)
T ss_dssp             TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHH
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHH
Confidence            345789999999999999999999999998   799998    76    21 1   00 0     0      13468889


Q ss_pred             hcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073          209 AANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGE  265 (331)
Q Consensus       209 l~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~  265 (331)
                      ++++|+|+.+.|..+   +++.++.++.|+++.++++++...  .+.-+.+|.+.|.
T Consensus       261 l~~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLynP~--~t~~~~~A~~~G~  312 (439)
T 2dvm_A          261 LKDADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLANPV--PEILPEEAKKAGA  312 (439)
T ss_dssp             HTTCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCSSS--CSSCHHHHHHHTC
T ss_pred             hccCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCCCC--CcchHHHHHHcCC
Confidence            999999999987532   456667788899999999995443  4444555555554

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.47  E-value=0.00016  Score=66.70  Aligned_cols=101  Identities=14%  Similarity=0.209  Sum_probs=67.7

Q ss_pred             CceEEEEecChHHHH-HHHHHhh-CCCEEE-EECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073          161 GKRVGIVGLGNIGLQ-VAKRLQA-FGCNVL-YNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       161 g~~vgIiG~G~IG~~-~A~~l~~-~G~~V~-~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~  230 (331)
                      ..++||||+|.||+. +++.++. -+++++ ++++++..       .+...+.++++++.+.|+|++|+|........  
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~--   83 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEII--   83 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHHH--
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHHH--
Confidence            468999999999996 8888876 477876 68887653       13334679999999999999999966443322  


Q ss_pred             HHHHhcCCCCc-EEEE-cCCCCccCHHHHHHHHHhCCc
Q 020073          231 REVMLALGKEG-IIVN-VGRGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       231 ~~~l~~mk~ga-~lIn-~srg~~vd~~al~~aL~~~~i  266 (331)
                      ...   ++.|. +++. ..--.+-+.++|.++.++..+
T Consensus        84 ~~a---l~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~  118 (308)
T 3uuw_A           84 KIL---LNLGVHVYVDKPLASTVSQGEELIELSTKKNL  118 (308)
T ss_dssp             HHH---HHTTCEEEECSSSSSSHHHHHHHHHHHHHHTC
T ss_pred             HHH---HHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence            222   34443 5554 222334455667777776554

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.46  E-value=0.00035  Score=65.55  Aligned_cols=57  Identities=30%  Similarity=0.326  Sum_probs=46.6

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-C---------------C--ccccCCHHhhhcCCCEEEEec
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-V---------------P--YAFYSNVCELAANSDALIICC  219 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-~---------------~--~~~~~~l~ell~~aDiV~l~~  219 (331)
                      ++|+|||.|.+|..+|..+...|+ +|+.+|++.+. .               .  .....++ +.+++||+|++++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~av   90 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITA   90 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcC
Confidence            589999999999999999998888 99999998653 0               0  1112466 7899999999998

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.46  E-value=0.00026  Score=58.41  Aligned_cols=83  Identities=11%  Similarity=-0.006  Sum_probs=55.4

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC----C------CCccc-------cCCHHhh-hcCCCEEEEeccCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK----P------VPYAF-------YSNVCEL-AANSDALIICCALT  222 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~----~------~~~~~-------~~~l~el-l~~aDiV~l~~P~t  222 (331)
                      .+++.|+|+|.+|+.+++.|...|.+|++.++.+.    .      .+...       ...+.++ +.++|+|+++++..
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   82 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence            46799999999999999999999999999988641    1      11110       1234554 78999999998865


Q ss_pred             hhhhhhccHHHHhcCCCCcEEEE
Q 020073          223 DQTRRMINREVMLALGKEGIIVN  245 (331)
Q Consensus       223 ~~t~~li~~~~l~~mk~ga~lIn  245 (331)
                      ..+.  .-......+.+...+|.
T Consensus        83 ~~n~--~~~~~a~~~~~~~~ii~  103 (153)
T 1id1_A           83 ADNA--FVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             HHHH--HHHHHHHHHTSSSCEEE
T ss_pred             HHHH--HHHHHHHHHCCCCEEEE
Confidence            4332  22334444534444444

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.45  E-value=0.00025  Score=66.17  Aligned_cols=62  Identities=21%  Similarity=0.347  Sum_probs=50.3

Q ss_pred             ceEEEEecChHHHHHHHHHhhC-CCEEE-EECCCCCC-------CCccccCCHHhhhc--CCCEEEEeccCChh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF-GCNVL-YNSRSKKP-------VPYAFYSNVCELAA--NSDALIICCALTDQ  224 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~-------~~~~~~~~l~ell~--~aDiV~l~~P~t~~  224 (331)
                      .+|||||+|.||+..++.+... +++++ ++|+++..       .+.. +.+++++++  +.|+|++|+|....
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h   76 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTH   76 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGH
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhH
Confidence            5899999999999999999875 77876 68887643       2334 789999998  79999999986544

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.45  E-value=0.00017  Score=66.99  Aligned_cols=61  Identities=25%  Similarity=0.413  Sum_probs=47.6

Q ss_pred             ceEEEEecChHHHHHHHHHhhCC--CEEEEECCCCCC-----C--C---------ccc-cCCHHhhhcCCCEEEEeccCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFG--CNVLYNSRSKKP-----V--P---------YAF-YSNVCELAANSDALIICCALT  222 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~~-----~--~---------~~~-~~~l~ell~~aDiV~l~~P~t  222 (331)
                      ++|+|||.|.||..+|..|...|  .+|+++|++.+.     .  .         ... ..++ +.+++||+|++++|..
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~   80 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence            47999999999999999998778  689999987543     0  1         111 2456 7789999999999864


Q ss_pred             h
Q 020073          223 D  223 (331)
Q Consensus       223 ~  223 (331)
                      .
T Consensus        81 ~   81 (309)
T 1hyh_A           81 K   81 (309)
T ss_dssp             G
T ss_pred             c
Confidence            3

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.43  E-value=0.00019  Score=67.59  Aligned_cols=63  Identities=17%  Similarity=0.186  Sum_probs=50.6

Q ss_pred             ceEEEEecChHHHHHHHHHhhC-CCEEE-EECCCCCC-------CCccccCCHHhhh--cCCCEEEEeccCChh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF-GCNVL-YNSRSKKP-------VPYAFYSNVCELA--ANSDALIICCALTDQ  224 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~-------~~~~~~~~l~ell--~~aDiV~l~~P~t~~  224 (331)
                      .+|||||+|.||+..++.++.. +++|+ ++|+++..       .+...+.++++++  .+.|+|++|+|....
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h   79 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKH   79 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSH
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHH
Confidence            5899999999999999999887 78865 67887643       1333467999999  669999999997644

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.41  E-value=0.00015  Score=66.68  Aligned_cols=89  Identities=16%  Similarity=0.170  Sum_probs=63.5

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC---C----Cc---------cccCCHHhhhcCCCEEEEeccC
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP---V----PY---------AFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---~----~~---------~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      ++.|+++.|+|.|.||+++|+.|...| +|++++|+.++   .    ..         ....++.+.+.++|+|+.++|.
T Consensus       125 ~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~  203 (287)
T 1nvt_A          125 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPI  203 (287)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCT
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCC
Confidence            467899999999999999999999999 99999997543   0    00         0111235667889999999986


Q ss_pred             Chhhh---hhc-cHHHHhcCCCCcEEEEcCCCC
Q 020073          222 TDQTR---RMI-NREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       222 t~~t~---~li-~~~~l~~mk~ga~lIn~srg~  250 (331)
                      .....   ..+ +   .+.++++++++|++-..
T Consensus       204 ~~~~~~~~~~~~~---~~~l~~~~~v~Dv~y~p  233 (287)
T 1nvt_A          204 GMYPNIDVEPIVK---AEKLREDMVVMDLIYNP  233 (287)
T ss_dssp             TCTTCCSSCCSSC---STTCCSSSEEEECCCSS
T ss_pred             CCCCCCCCCCCCC---HHHcCCCCEEEEeeeCC
Confidence            53211   012 2   34578888889988643

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.38  E-value=0.00015  Score=68.01  Aligned_cols=63  Identities=17%  Similarity=0.190  Sum_probs=50.8

Q ss_pred             ceEEEEecChHHHHHHHHHhhC-CCEEE-EECCCCCC-------CCccccCCHHhhhc--CCCEEEEeccCChh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF-GCNVL-YNSRSKKP-------VPYAFYSNVCELAA--NSDALIICCALTDQ  224 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~-------~~~~~~~~l~ell~--~aDiV~l~~P~t~~  224 (331)
                      .+|||||+|.||+.+++.++.. +++|+ ++++++..       .+...+.++++++.  +.|+|++|+|....
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h   78 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTH   78 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGH
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhh
Confidence            5899999999999999999876 77876 67877543       23445689999998  89999999986544

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.38  E-value=0.00029  Score=65.81  Aligned_cols=64  Identities=20%  Similarity=0.173  Sum_probs=50.6

Q ss_pred             CceEEEEecChHHHHHHHHHhhC-CCEEE-EECCCCCC-------CCc-cccCCHHhhhc--CCCEEEEeccCChh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAF-GCNVL-YNSRSKKP-------VPY-AFYSNVCELAA--NSDALIICCALTDQ  224 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~-------~~~-~~~~~l~ell~--~aDiV~l~~P~t~~  224 (331)
                      ..++||||+|.||+.+++.++.. +++|+ +++++...       .+. ..+.++++++.  +.|+|++|+|....
T Consensus         5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   80 (330)
T 3e9m_A            5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGH   80 (330)
T ss_dssp             CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGH
T ss_pred             eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHH
Confidence            35899999999999999999875 67776 67877653       233 34678999997  79999999996643

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.37  E-value=0.0003  Score=62.55  Aligned_cols=89  Identities=16%  Similarity=0.164  Sum_probs=60.8

Q ss_pred             CCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CC-ccc-cCC-HHhhhcCCCEEEEeccCC
Q 020073          153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VP-YAF-YSN-VCELAANSDALIICCALT  222 (331)
Q Consensus       153 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~-~~~-~~~-l~ell~~aDiV~l~~P~t  222 (331)
                      +|..-++.|++|.|||.|.+|...++.|...|++|+++++...+       .+ ... ..+ -.+.+..+|+|+.++ .+
T Consensus        23 ~Pifl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT-~d  101 (223)
T 3dfz_A           23 YTVMLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVAT-ND  101 (223)
T ss_dssp             CEEEECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECC-CC
T ss_pred             cccEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECC-CC
Confidence            55666899999999999999999999999999999999886543       11 111 011 134678899888764 34


Q ss_pred             hhhhhhccHHHHhcCCCCcEEEEcC
Q 020073          223 DQTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       223 ~~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      ++....|    ....+ -.++||+.
T Consensus       102 ~~~N~~I----~~~ak-~gi~VNvv  121 (223)
T 3dfz_A          102 QAVNKFV----KQHIK-NDQLVNMA  121 (223)
T ss_dssp             THHHHHH----HHHSC-TTCEEEC-
T ss_pred             HHHHHHH----HHHHh-CCCEEEEe
Confidence            4433333    33345 45778875

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.36  E-value=0.00021  Score=66.30  Aligned_cols=100  Identities=20%  Similarity=0.313  Sum_probs=64.4

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcccc---------CCH-HhhhcCCCEEEEeccCChhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFY---------SNV-CELAANSDALIICCALTDQT  225 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~---------~~l-~ell~~aDiV~l~~P~t~~t  225 (331)
                      ++|+|||.|.||..+|..|. .|.+|.+++|+...      .+....         .+. .+....+|+|++++|.. .+
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-~~   80 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQH-QL   80 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGG-GH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHH-HH
Confidence            58999999999999999999 89999999987632      111100         001 24567899999999853 34


Q ss_pred             hhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          226 RRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       226 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      ...+  +.++.+.++. +|.+.-|=- .++.+.+.+...++.
T Consensus        81 ~~~l--~~l~~~~~~~-ivs~~nGi~-~~e~l~~~~~~~~vl  118 (307)
T 3ego_A           81 QSVF--SSLERIGKTN-ILFLQNGMG-HIHDLKDWHVGHSIY  118 (307)
T ss_dssp             HHHH--HHTTSSCCCE-EEECCSSSH-HHHHHHTCCCSCEEE
T ss_pred             HHHH--HHhhcCCCCe-EEEecCCcc-HHHHHHHhCCCCcEE
Confidence            4443  3344455666 787766632 233444444444443

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.35  E-value=0.00062  Score=63.71  Aligned_cols=57  Identities=19%  Similarity=0.171  Sum_probs=46.2

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC---------C-------C--ccccCCHHhhhcCCCEEEEec
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP---------V-------P--YAFYSNVCELAANSDALIICC  219 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~---------~-------~--~~~~~~l~ell~~aDiV~l~~  219 (331)
                      ++|+|||.|.+|..+|..+...|. +|..+|.+.+.         .       .  .....++ +.+++||+|+++.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeC
Confidence            589999999999999999998888 89999987653         0       1  1112466 7899999999998

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.35  E-value=0.00025  Score=66.00  Aligned_cols=99  Identities=19%  Similarity=0.209  Sum_probs=62.7

Q ss_pred             eEEEEecChHHHHH-HHHHhhCCCEEE-EECCCCCC-------CCc-cccCCHHhhhc--CCCEEEEeccCChhhhhhcc
Q 020073          163 RVGIVGLGNIGLQV-AKRLQAFGCNVL-YNSRSKKP-------VPY-AFYSNVCELAA--NSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       163 ~vgIiG~G~IG~~~-A~~l~~~G~~V~-~~~~~~~~-------~~~-~~~~~l~ell~--~aDiV~l~~P~t~~t~~li~  230 (331)
                      ++||||+|.||+.+ ++.+...|++++ ++++++..       .+. ..+.+++++++  +.|+|++++|........  
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~--   79 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQT--   79 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHH--
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHHHH--
Confidence            79999999999998 877766778875 67887543       133 24678999987  499999999854332221  


Q ss_pred             HHHHhcCCCCc-EEEEc-CCCCccCHHHHHHHHHhCCc
Q 020073          231 REVMLALGKEG-IIVNV-GRGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       231 ~~~l~~mk~ga-~lIn~-srg~~vd~~al~~aL~~~~i  266 (331)
                         ...++.|. +++.- .-...-+.+.|.++.++..+
T Consensus        80 ---~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~  114 (332)
T 2glx_A           80 ---LAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGV  114 (332)
T ss_dssp             ---HHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTC
T ss_pred             ---HHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCC
Confidence               12345564 55542 11233334556666655443

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.32  E-value=0.00015  Score=67.25  Aligned_cols=100  Identities=12%  Similarity=0.212  Sum_probs=65.5

Q ss_pred             ceEEEEecChHHHHHHHHHhhC-CCEEE-EECCCCCC-----CCccccCCHHhhhc--CCCEEEEeccCChhhhhhccHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF-GCNVL-YNSRSKKP-----VPYAFYSNVCELAA--NSDALIICCALTDQTRRMINRE  232 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~-----~~~~~~~~l~ell~--~aDiV~l~~P~t~~t~~li~~~  232 (331)
                      .+|||||+|.||+.+++.+... +++++ ++++++..     .....+.+++++++  ++|+|++++|........    
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~----   86 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPGCVIESDWRSVVSAPEVEAVIIATPPATHAEIT----   86 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTTCEEESSTHHHHTCTTCCEEEEESCGGGHHHHH----
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhhCcccCCHHHHhhCCCCCEEEEeCChHHHHHHH----
Confidence            5899999999999999999875 67754 77876543     11234578999985  799999999855332222    


Q ss_pred             HHhcCCCCc-EEEEc-CCCCccCHHHHHHHHHhCCc
Q 020073          233 VMLALGKEG-IIVNV-GRGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       233 ~l~~mk~ga-~lIn~-srg~~vd~~al~~aL~~~~i  266 (331)
                       ...++.|. +++.- .--.+-+.+.|.++.++..+
T Consensus        87 -~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~  121 (315)
T 3c1a_A           87 -LAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGV  121 (315)
T ss_dssp             -HHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCC
T ss_pred             -HHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCC
Confidence             12245564 56652 22233344667777666544

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.30  E-value=0.00031  Score=65.69  Aligned_cols=101  Identities=18%  Similarity=0.243  Sum_probs=65.2

Q ss_pred             ceEEEEecChHHHHHHHHHh-h-CCCEEE-EECCCCCC-------CCc-cccCCHHhhhc--CCCEEEEeccCChhhhhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQ-A-FGCNVL-YNSRSKKP-------VPY-AFYSNVCELAA--NSDALIICCALTDQTRRM  228 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~-~-~G~~V~-~~~~~~~~-------~~~-~~~~~l~ell~--~aDiV~l~~P~t~~t~~l  228 (331)
                      .+|||||+|.||+..++.++ . -|++++ ++++++..       .+. ..+.++++++.  +.|+|++|+|........
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~   88 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPEMT   88 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHHHH
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHHHH
Confidence            58999999999999999987 5 477754 67877543       133 34678999986  699999999855332222


Q ss_pred             ccHHHHhcCCCCc-EEEEc-CCCCccCHHHHHHHHHhC-Cce
Q 020073          229 INREVMLALGKEG-IIVNV-GRGAVIDENEMVRCLVRG-EIA  267 (331)
Q Consensus       229 i~~~~l~~mk~ga-~lIn~-srg~~vd~~al~~aL~~~-~i~  267 (331)
                           ...++.|. +++.- .-..+-+.+.|.++.++. .+.
T Consensus        89 -----~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~  125 (346)
T 3cea_A           89 -----IYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQI  125 (346)
T ss_dssp             -----HHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSC
T ss_pred             -----HHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCe
Confidence                 22345565 44431 111222334577777766 553

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.30  E-value=0.00082  Score=62.62  Aligned_cols=101  Identities=15%  Similarity=0.185  Sum_probs=63.6

Q ss_pred             CceEEEEecChHHHHHHHHHhhC-CCEEE-EECCCCCC-------CCc-cccCCHHhhhc--CCCEEEEeccCChhhhhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAF-GCNVL-YNSRSKKP-------VPY-AFYSNVCELAA--NSDALIICCALTDQTRRM  228 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~-------~~~-~~~~~l~ell~--~aDiV~l~~P~t~~t~~l  228 (331)
                      ..++||||+|.||+.+++.++.. +++++ ++++++..       .+. ..+.++++++.  +.|+|++++|........
T Consensus         5 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~   84 (329)
T 3evn_A            5 KVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYKVA   84 (329)
T ss_dssp             CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHHHH
T ss_pred             ceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence            35899999999999999998765 55665 67887654       122 24679999998  799999999865432221


Q ss_pred             ccHHHHhcCCCCc-EEEEcC-CCCccCHHHHHHHHHhCCc
Q 020073          229 INREVMLALGKEG-IIVNVG-RGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       229 i~~~~l~~mk~ga-~lIn~s-rg~~vd~~al~~aL~~~~i  266 (331)
                        ..   .++.|. +++.-- --.+-+.++|+++.++..+
T Consensus        85 --~~---al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~  119 (329)
T 3evn_A           85 --KA---ALLAGKHVLVEKPFTLTYDQANELFALAESCNL  119 (329)
T ss_dssp             --HH---HHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTC
T ss_pred             --HH---HHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCC
Confidence              12   233342 444321 2223344456666555544

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.29  E-value=0.00023  Score=66.07  Aligned_cols=107  Identities=12%  Similarity=0.192  Sum_probs=66.3

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC--------C-C------ccc-cCCHHhhhcCCCEEEEeccCCh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP--------V-P------YAF-YSNVCELAANSDALIICCALTD  223 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~--------~-~------~~~-~~~l~ell~~aDiV~l~~P~t~  223 (331)
                      ++|+|||.|.+|..+|..+...|.  +|..+|+....        . .      ... ..+ .+.+++||+|+++++...
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~~   79 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGANQ   79 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCCC
Confidence            379999999999999999998888  99999987542        0 0      001 123 467899999999995322


Q ss_pred             h-----------hhhhcc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEE
Q 020073          224 Q-----------TRRMIN--REVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGA  269 (331)
Q Consensus       224 ~-----------t~~li~--~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga  269 (331)
                      .           +..++.  .+.+....|++++|+++-+.=+....+.+.....++.|.
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~  138 (304)
T 2v6b_A           80 KPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS  138 (304)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred             CCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence            1           111110  122333368899998765543334444454445566544

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.28  E-value=0.00034  Score=65.30  Aligned_cols=65  Identities=17%  Similarity=0.217  Sum_probs=50.9

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCC---C-C----------Cc----cccCCH---HhhhcCCCEE
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKK---P-V----------PY----AFYSNV---CELAANSDAL  215 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~---~-~----------~~----~~~~~l---~ell~~aDiV  215 (331)
                      +++|+++.|+|.|.+|++++..|...|. +|++++|+.+   + .          +.    ....++   .+.+.++|+|
T Consensus       145 ~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiI  224 (312)
T 3t4e_A          145 DMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADIL  224 (312)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEE
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEE
Confidence            5789999999999999999999999999 8999999832   2 0          00    112343   5567889999


Q ss_pred             EEeccCC
Q 020073          216 IICCALT  222 (331)
Q Consensus       216 ~l~~P~t  222 (331)
                      |.++|..
T Consensus       225 INaTp~G  231 (312)
T 3t4e_A          225 TNGTKVG  231 (312)
T ss_dssp             EECSSTT
T ss_pred             EECCcCC
Confidence            9999865

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.28  E-value=0.0009  Score=60.19  Aligned_cols=80  Identities=16%  Similarity=0.249  Sum_probs=54.9

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEE-ECCCCCC-CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLY-NSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGK  239 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~-~~~~~~~-~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~  239 (331)
                      .+|+|+|+|+||+.+++.+...+.++.+ +++.... .+...+.++++++ ++|+|+-+.+. ..+...     +. ++.
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~~~gv~v~~dl~~l~-~~DVvIDft~p-~a~~~~-----~~-l~~   75 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVK-GADVAIDFSNP-NLLFPL-----LD-EDF   75 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC--CCSCBCSCTTTCT-TCSEEEECSCH-HHHHHH-----HT-SCC
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccccCCCceeCCHHHHh-CCCEEEEeCCh-HHHHHH-----HH-Hhc
Confidence            5899999999999999999877557654 7876543 4445567888988 99998854421 122222     23 677


Q ss_pred             CcEEEEcCCC
Q 020073          240 EGIIVNVGRG  249 (331)
Q Consensus       240 ga~lIn~srg  249 (331)
                      |.-+|....|
T Consensus        76 g~~vVigTTG   85 (243)
T 3qy9_A           76 HLPLVVATTG   85 (243)
T ss_dssp             CCCEEECCCS
T ss_pred             CCceEeCCCC
Confidence            7666655556

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.28  E-value=0.00035  Score=65.18  Aligned_cols=106  Identities=21%  Similarity=0.333  Sum_probs=65.5

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC-----C----------Ccc-ccCCHHhhhcCCCEEEEeccCCh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP-----V----------PYA-FYSNVCELAANSDALIICCALTD  223 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~-----~----------~~~-~~~~l~ell~~aDiV~l~~P~t~  223 (331)
                      ++|+|||.|.||..+|..|...|.  +|+++|++.+.     .          ... ...+ .+.+++||+|++++|...
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence            379999999999999999988888  99999987543     0          001 1124 457899999999998543


Q ss_pred             h---hh--------hhccHHH---HhcCCCCcEEEEcCCCCccCHHHHHHHH--HhCCceEE
Q 020073          224 Q---TR--------RMINREV---MLALGKEGIIVNVGRGAVIDENEMVRCL--VRGEIAGA  269 (331)
Q Consensus       224 ~---t~--------~li~~~~---l~~mk~ga~lIn~srg~~vd~~al~~aL--~~~~i~ga  269 (331)
                      .   ++        .++ .+.   +....|.+++|+++-+.=+....+.+..  ...++.|.
T Consensus        80 ~~g~~r~dl~~~n~~i~-~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~~~rviG~  140 (319)
T 1a5z_A           80 KPGETRLQLLGRNARVM-KEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS  140 (319)
T ss_dssp             CSSCCHHHHHHHHHHHH-HHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             CCCCCHHHHHHHHHHHH-HHHHHHHHhhCCCeEEEEeCCcHHHHHHHHHHHhCCChhhEEee
Confidence            1   00        111 222   2222578888887554333222232322  34456554

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.27  E-value=0.00017  Score=68.02  Aligned_cols=63  Identities=14%  Similarity=0.149  Sum_probs=50.8

Q ss_pred             CceEEEEecChHHHHHHHHHhhC--CCEEE-EECCCCCC-------CCccccCCHHhhhc--CCCEEEEeccCCh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAF--GCNVL-YNSRSKKP-------VPYAFYSNVCELAA--NSDALIICCALTD  223 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~--G~~V~-~~~~~~~~-------~~~~~~~~l~ell~--~aDiV~l~~P~t~  223 (331)
                      ..++||||+|.||+..++.++..  +++++ ++|+++..       .+...+.+++++++  +.|+|++|+|...
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   87 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGL   87 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGG
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHH
Confidence            46899999999999999999876  77865 77887644       13445689999987  7999999998653

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=97.26  E-value=0.00074  Score=54.29  Aligned_cols=98  Identities=18%  Similarity=0.267  Sum_probs=72.0

Q ss_pred             ceEEEEec----ChHHHHHHHHHhhCCCEEEEECCCCCC-CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhc
Q 020073          162 KRVGIVGL----GNIGLQVAKRLQAFGCNVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLA  236 (331)
Q Consensus       162 ~~vgIiG~----G~IG~~~A~~l~~~G~~V~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~  236 (331)
                      ++++|||.    |+.|..+.+.|+..|++|+-+++.... .+...+.++.++-. -|++++++|. +.+..++.+ .. .
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~-vDlavi~~p~-~~v~~~v~e-~~-~   80 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEG-VDTVTLYINP-QNQLSEYNY-IL-S   80 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTT-CCEEEECSCH-HHHGGGHHH-HH-H
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCC-CCEEEEEeCH-HHHHHHHHH-HH-h
Confidence            67999997    579999999999999999999987655 55566778888888 9999999984 455555533 22 2


Q ss_pred             CCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          237 LGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       237 mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      +...+++++.  |-  .++++.+..++..++
T Consensus        81 ~g~k~v~~~~--G~--~~~e~~~~a~~~Gir  107 (122)
T 3ff4_A           81 LKPKRVIFNP--GT--ENEELEEILSENGIE  107 (122)
T ss_dssp             HCCSEEEECT--TC--CCHHHHHHHHHTTCE
T ss_pred             cCCCEEEECC--CC--ChHHHHHHHHHcCCe
Confidence            3444666654  32  356777777777776

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.25  E-value=0.00054  Score=63.69  Aligned_cols=59  Identities=24%  Similarity=0.349  Sum_probs=46.1

Q ss_pred             ceEEEEecChHHHHHHHHHhh--CCCEEEEECCCCCC---------CC---------ccccCCHHhhhcCCCEEEEeccC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQA--FGCNVLYNSRSKKP---------VP---------YAFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~--~G~~V~~~~~~~~~---------~~---------~~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      ++|+|||.|.+|..+|..+..  +|.+|..+|+..+.         ..         .....++++ +++||+|++++|.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~   79 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL   79 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence            379999999999999999986  57899999998653         00         011245666 8999999999974

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=97.25  E-value=0.00094  Score=60.35  Aligned_cols=97  Identities=14%  Similarity=0.248  Sum_probs=68.4

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEE-EECCCCCC--CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YNSRSKKP--VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML  235 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~~~~~~~--~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~  235 (331)
                      -+..+|++||+|.||+.+++.  . ++++. +|+  .+.  .+.....++++++.++|+|+=|.+ .+.    +.+....
T Consensus        10 ~~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~--~k~gelgv~a~~d~d~lla~pD~VVe~A~-~~a----v~e~~~~   79 (253)
T 1j5p_A           10 HHHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD--RISKDIPGVVRLDEFQVPSDVSTVVECAS-PEA----VKEYSLQ   79 (253)
T ss_dssp             -CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC--SSCCCCSSSEECSSCCCCTTCCEEEECSC-HHH----HHHHHHH
T ss_pred             cccceEEEECcCHHHHHHHhc--C-CcEEEEEEe--ccccccCceeeCCHHHHhhCCCEEEECCC-HHH----HHHHHHH
Confidence            356799999999999999998  4 88764 455  221  233445789999999999888763 222    3232445


Q ss_pred             cCCCCcEEEEcCCCCccCH---HHHHHHHHhCC
Q 020073          236 ALGKEGIIVNVGRGAVIDE---NEMVRCLVRGE  265 (331)
Q Consensus       236 ~mk~ga~lIn~srg~~vd~---~al~~aL~~~~  265 (331)
                      -++.|.-+|-+|-|.+.|+   +.|.++-++|.
T Consensus        80 iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg  112 (253)
T 1j5p_A           80 ILKNPVNYIIISTSAFADEVFRERFFSELKNSP  112 (253)
T ss_dssp             HTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCS
T ss_pred             HHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCC
Confidence            5899999999999988887   44555555554

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.23  E-value=0.00097  Score=62.22  Aligned_cols=100  Identities=21%  Similarity=0.229  Sum_probs=65.0

Q ss_pred             ceEEEEecChHHHHHHHHHhhC-CCEEE-EECCCCCC-C--CccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhc
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF-GCNVL-YNSRSKKP-V--PYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLA  236 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~-~--~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~  236 (331)
                      .+|||||+|+||+.+++.+... +++++ +++++... .  +...+.++++++.++|+|++|+|.......     ....
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~~~~gv~~~~d~~~ll~~~DvViiatp~~~h~~~-----~~~a   78 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDIPE-----QAPK   78 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECSCTTTHHHH-----HHHH
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHhhcCCCceeCCHHHHhcCCCEEEEcCCcHHHHHH-----HHHH
Confidence            4799999999999999999876 67754 67776433 1  223346788888889999999986533222     2234


Q ss_pred             CCCCcEEEEcCCCCc-c-CH-HHHHHHHHhCCc
Q 020073          237 LGKEGIIVNVGRGAV-I-DE-NEMVRCLVRGEI  266 (331)
Q Consensus       237 mk~ga~lIn~srg~~-v-d~-~al~~aL~~~~i  266 (331)
                      ++.|.-+|...-..+ + +. +.|.++.+++..
T Consensus        79 l~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~~  111 (320)
T 1f06_A           79 FAQFACTVDTYDNHRDIPRHRQVMNEAATAAGN  111 (320)
T ss_dssp             HTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTC
T ss_pred             HHCCCEEEECCCCcCCHHHHHHHHHHHHHhCCC
Confidence            566765555443332 2 22 456666665543

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.21  E-value=0.0054  Score=56.97  Aligned_cols=90  Identities=13%  Similarity=0.198  Sum_probs=67.0

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC-----C------CccccCCHHhhhcCCCEEEEec----cC
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP-----V------PYAFYSNVCELAANSDALIICC----AL  221 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~------~~~~~~~l~ell~~aDiV~l~~----P~  221 (331)
                      .+.|.+|++|| .+++.++.+..+..+|++|.+..+..-.     .      ......+++++++++|+|..-.    ..
T Consensus       151 ~l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~  230 (309)
T 4f2g_A          151 PIRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGF  230 (309)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC-----
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcc
Confidence            37899999999 6889999999999999999988764211     1      1123568999999999998743    00


Q ss_pred             --------ChhhhhhccHHHHhcCCCCcEEEEcC
Q 020073          222 --------TDQTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       222 --------t~~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                              ..-...-++.+.++++|++++|.-+.
T Consensus       231 e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~l  264 (309)
T 4f2g_A          231 EAENEARKRAFADWCVDEEMMSHANSDALFMHCL  264 (309)
T ss_dssp             -------CCSGGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             hhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCC
Confidence                    00013457999999999999988775

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.21  E-value=0.001  Score=60.73  Aligned_cols=86  Identities=14%  Similarity=0.222  Sum_probs=57.6

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhh----h
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTR----R  227 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~----~  227 (331)
                      .++++.|||.|.+|++++..|...|+ +|++++|+.++       .+.....++.  +.++|+|+.++|......    .
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm~~~~~~~~  195 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMD  195 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCccCccccCC
Confidence            46789999999999999999999998 79999998653       0111111222  468999999998753211    1


Q ss_pred             -hccHHHHhcCCCCcEEEEcCCCC
Q 020073          228 -MINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       228 -li~~~~l~~mk~ga~lIn~srg~  250 (331)
                       .+..+.   ++++.+++|+.-..
T Consensus       196 ~~~~~~~---l~~~~~v~DlvY~P  216 (271)
T 1npy_A          196 LAFPKAF---IDNASVAFDVVAMP  216 (271)
T ss_dssp             CSSCHHH---HHHCSEEEECCCSS
T ss_pred             CCCCHHH---cCCCCEEEEeecCC
Confidence             133333   24466677776543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.20  E-value=0.00034  Score=61.21  Aligned_cols=64  Identities=11%  Similarity=0.162  Sum_probs=48.2

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccc-------cCCHHhh-hcCCCEEEEeccCChhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAF-------YSNVCEL-AANSDALIICCALTDQT  225 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~-------~~~l~el-l~~aDiV~l~~P~t~~t  225 (331)
                      +++.|+|+|.+|+.+|+.|...|.+|++++++++.       .+...       ...+.++ +.++|+|++++|....+
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n   79 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVN   79 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHH
Confidence            36999999999999999999999999999987643       11111       1124454 78899999999866443

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.19  E-value=0.00047  Score=64.09  Aligned_cols=101  Identities=13%  Similarity=0.150  Sum_probs=63.6

Q ss_pred             ceEEEEecChHHH-HHHHHHhhC-CCEEEEECCCCCC-------CCccc-cCCHHhhh-cCCCEEEEeccCChhhhhhcc
Q 020073          162 KRVGIVGLGNIGL-QVAKRLQAF-GCNVLYNSRSKKP-------VPYAF-YSNVCELA-ANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       162 ~~vgIiG~G~IG~-~~A~~l~~~-G~~V~~~~~~~~~-------~~~~~-~~~l~ell-~~aDiV~l~~P~t~~t~~li~  230 (331)
                      .++||||+|.||+ .+++.++.. +++|+++++++..       .+... +.+..+++ .++|+|++++|....... + 
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~~-~-   80 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTL-A-   80 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHH-H-
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHHH-H-
Confidence            4799999999998 499988765 6787788887643       12221 33444555 789999999985432221 1 


Q ss_pred             HHHHhcCCCCc-EEEEc-CCCCccCHHHHHHHHHhCCce
Q 020073          231 REVMLALGKEG-IIVNV-GRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       231 ~~~l~~mk~ga-~lIn~-srg~~vd~~al~~aL~~~~i~  267 (331)
                      .   ..++.|. +++.- .--.+-+.+.|.++.++..+.
T Consensus        81 ~---~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (323)
T 1xea_A           81 A---FFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  116 (323)
T ss_dssp             H---HHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             H---HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence            1   2344554 66652 112333455677777776654

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=97.19  E-value=0.00062  Score=64.52  Aligned_cols=100  Identities=15%  Similarity=0.213  Sum_probs=63.1

Q ss_pred             ceEEEEecChHHHH-HHHHHhhC-CCEEE-EECCCCCC-----CCccccCCHHhhhc--CCCEEEEeccCChhhhhhccH
Q 020073          162 KRVGIVGLGNIGLQ-VAKRLQAF-GCNVL-YNSRSKKP-----VPYAFYSNVCELAA--NSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       162 ~~vgIiG~G~IG~~-~A~~l~~~-G~~V~-~~~~~~~~-----~~~~~~~~l~ell~--~aDiV~l~~P~t~~t~~li~~  231 (331)
                      .+|||||+|.||+. .++.++.. +++|+ ++++++..     .+...+.++++++.  +.|+|++|+|........+  
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~~~--   85 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPLAR--   85 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHHCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHHHH--
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHHHH--
Confidence            58999999999997 77777765 77875 67776543     23445689999998  7899999998654332221  


Q ss_pred             HHHhcCCCCc-EEEEcC-CCCccCHHHHHHHHHhCCc
Q 020073          232 EVMLALGKEG-IIVNVG-RGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       232 ~~l~~mk~ga-~lIn~s-rg~~vd~~al~~aL~~~~i  266 (331)
                         ..++.|. +++.-= --.+-+.++|+++.++..+
T Consensus        86 ---~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~  119 (364)
T 3e82_A           86 ---LALNAGKHVVVDKPFTLDMQEARELIALAEEKQR  119 (364)
T ss_dssp             ---HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTC
T ss_pred             ---HHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCC
Confidence               2234443 333221 1222344456666655544

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.18  E-value=0.00019  Score=64.68  Aligned_cols=77  Identities=23%  Similarity=0.317  Sum_probs=57.3

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCC-------------------CC------------CCc--cc--
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSK-------------------KP------------VPY--AF--  201 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~-------------------~~------------~~~--~~--  201 (331)
                      .|++++|.|||+|.+|..+|+.|...|. +|.++|+..                   .+            ...  ..  
T Consensus        28 ~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~  107 (249)
T 1jw9_B           28 ALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN  107 (249)
T ss_dssp             HHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             HHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEe
Confidence            5889999999999999999999999998 888888765                   11            000  00  


Q ss_pred             --c--CCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073          202 --Y--SNVCELAANSDALIICCALTDQTRRMINREVML  235 (331)
Q Consensus       202 --~--~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~  235 (331)
                        .  .+++++++++|+|+.+++ +.+++.++++...+
T Consensus       108 ~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~  144 (249)
T 1jw9_B          108 ALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFA  144 (249)
T ss_dssp             SCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHH
T ss_pred             ccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHH
Confidence              0  134567889999999886 56777777765544

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.16  E-value=0.00037  Score=65.98  Aligned_cols=64  Identities=19%  Similarity=0.164  Sum_probs=50.6

Q ss_pred             CceEEEEecChHHHHHHHHHhhC-CCEEE-EECCCCCC------CCccccCCHHhhhc--CCCEEEEeccCChh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAF-GCNVL-YNSRSKKP------VPYAFYSNVCELAA--NSDALIICCALTDQ  224 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~------~~~~~~~~l~ell~--~aDiV~l~~P~t~~  224 (331)
                      ..++||||+|.||+..++.++.. +++|. ++++++..      .+...+.++++++.  +.|+|++|+|....
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h   78 (359)
T 3e18_A            5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSH   78 (359)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGH
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence            35899999999999999999876 77876 56776543      23445689999997  78999999986543

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.16  E-value=0.00039  Score=65.55  Aligned_cols=65  Identities=20%  Similarity=0.133  Sum_probs=50.0

Q ss_pred             CCceEEEEecChHHH-HHHHHHhhC-CCEEE-EECCCCCC-------CCccccCCHHhhhc--CCCEEEEeccCChh
Q 020073          160 GGKRVGIVGLGNIGL-QVAKRLQAF-GCNVL-YNSRSKKP-------VPYAFYSNVCELAA--NSDALIICCALTDQ  224 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~-~~A~~l~~~-G~~V~-~~~~~~~~-------~~~~~~~~l~ell~--~aDiV~l~~P~t~~  224 (331)
                      .-.++||||+|.||+ .+++.++.. +++|+ ++++++..       .+...+.+++++++  +.|+|++|+|....
T Consensus        26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h  102 (350)
T 3rc1_A           26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLH  102 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGH
T ss_pred             CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHH
Confidence            346899999999998 789988876 77876 67876543       13334579999987  58999999986643

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=97.16  E-value=0.0042  Score=64.44  Aligned_cols=129  Identities=14%  Similarity=0.167  Sum_probs=86.6

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--------------------C-C------ccccCCHHhhhcCCCE
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--------------------V-P------YAFYSNVCELAANSDA  214 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--------------------~-~------~~~~~~l~ell~~aDi  214 (331)
                      ++|||||.|.||..+|..+...|++|+.+|.+++.                    . .      .....+-.+.+++||+
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aDl  396 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELSTVDL  396 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGGGSCSE
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHHhhCCE
Confidence            69999999999999999999999999999987542                    0 0      0011222345889999


Q ss_pred             EEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcC
Q 020073          215 LIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQP  294 (331)
Q Consensus       215 V~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTP  294 (331)
                      |+=++|-+-+.+.-+-++.=+.++++++|-.-.++  +.-..|.++++ ..-+.+++=-|.+-|.  -||.   -|+-+|
T Consensus       397 VIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~-~p~r~ig~HFfnP~~~--m~LV---Evi~g~  468 (742)
T 3zwc_A          397 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTD-RPQLVIGTHFFSPAHV--MRLL---EVIPSR  468 (742)
T ss_dssp             EEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSS-CGGGEEEEECCSSTTT--CCEE---EEEECS
T ss_pred             EEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcC-CccccccccccCCCCC--CceE---EEecCC
Confidence            99999998887776656666668999987655444  45555666553 3333456655543221  1222   456666


Q ss_pred             CCCC
Q 020073          295 HRAV  298 (331)
Q Consensus       295 H~a~  298 (331)
                      +.+-
T Consensus       469 ~Ts~  472 (742)
T 3zwc_A          469 YSSP  472 (742)
T ss_dssp             SCCH
T ss_pred             CCCH
Confidence            5543

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.15  E-value=0.00052  Score=63.58  Aligned_cols=99  Identities=17%  Similarity=0.185  Sum_probs=60.6

Q ss_pred             ceEEEEecChHHHHHHHHHhh-CCCEEE-EECCCCCC---CCc--cccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQA-FGCNVL-YNSRSKKP---VPY--AFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~-~G~~V~-~~~~~~~~---~~~--~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      .+|||||+|.||+.+++.++. -++++. ++++++..   .+.  ..+.++.+. .++|+|++|+|.......     ..
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~~g~~~~~~~~l~~~-~~~DvViiatp~~~h~~~-----~~   83 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPFELQPFRVVSDIEQL-ESVDVALVCSPSREVERT-----AL   83 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-------CCTTSCEESSGGGS-SSCCEEEECSCHHHHHHH-----HH
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHcCCCcCCHHHHHhC-CCCCEEEECCCchhhHHH-----HH
Confidence            589999999999999999986 467877 58887654   121  124455555 789999999985433222     12


Q ss_pred             hcCCCCcEEEEcCC--C-CccCHHHHHHHHHhCCc
Q 020073          235 LALGKEGIIVNVGR--G-AVIDENEMVRCLVRGEI  266 (331)
Q Consensus       235 ~~mk~ga~lIn~sr--g-~~vd~~al~~aL~~~~i  266 (331)
                      ..++.|.-++...=  + ...+.+.|.++.++..+
T Consensus        84 ~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~  118 (304)
T 3bio_A           84 EILKKGICTADSFDIHDGILALRRSLGDAAGKSGA  118 (304)
T ss_dssp             HHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCC
Confidence            33566766665431  2 22233556666665443

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=97.15  E-value=0.0018  Score=59.54  Aligned_cols=103  Identities=18%  Similarity=0.251  Sum_probs=69.4

Q ss_pred             CceEEEEec-ChHHHHHHHHHhhCCCEEE-EECCCCC-C--CCccccCCHHhhhc--CCCEEEEeccCChhhhhhccHHH
Q 020073          161 GKRVGIVGL-GNIGLQVAKRLQAFGCNVL-YNSRSKK-P--VPYAFYSNVCELAA--NSDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       161 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~~~~~~-~--~~~~~~~~l~ell~--~aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      ..+|+|+|+ |++|+.+++.++..|++++ .+++... .  .+...+.+++++..  ..|++++++|.. .....+ .+.
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~~~~G~~vy~sl~el~~~~~~D~viI~tP~~-~~~~~~-~ea   84 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAP-FCKDSI-LEA   84 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCGG-GHHHHH-HHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccceeCCeeccCCHHHHhhcCCCCEEEEecCHH-HHHHHH-HHH
Confidence            468999998 9999999999988899854 5666532 2  34455788999998  899999999854 333333 222


Q ss_pred             HhcCCCCcEEEEcCCCC-ccCHHHHHHHHHhCCce
Q 020073          234 MLALGKEGIIVNVGRGA-VIDENEMVRCLVRGEIA  267 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~-~vd~~al~~aL~~~~i~  267 (331)
                      ++ .... .+|..+-|- .-+.+.+.++.++..+.
T Consensus        85 ~~-~Gi~-~iVi~t~G~~~~~~~~l~~~A~~~gv~  117 (288)
T 2nu8_A           85 ID-AGIK-LIITITEGIPTLDMLTVKVKLDEAGVR  117 (288)
T ss_dssp             HH-TTCS-EEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HH-CCCC-EEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            22 2222 334455553 23445888888876664

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.14  E-value=0.00055  Score=65.31  Aligned_cols=61  Identities=26%  Similarity=0.378  Sum_probs=47.7

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCcc---ccC---CHHhhhcCCCEEEEe
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYA---FYS---NVCELAANSDALIIC  218 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~---~~~---~l~ell~~aDiV~l~  218 (331)
                      -+.|++|+|+|.|.+|+.+++.++.+|++|+++|+++..     ....   .+.   .+.++++++|+|+..
T Consensus        11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~   82 (389)
T 3q2o_A           11 ILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYE   82 (389)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEES
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeec
Confidence            478999999999999999999999999999999876543     1111   112   367888999998653

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=97.11  E-value=0.00046  Score=60.95  Aligned_cols=61  Identities=10%  Similarity=0.140  Sum_probs=42.4

Q ss_pred             ceEEEEecChHHHHHHHH--HhhCCCEEE-EECCCCCCC-----C--ccccCCHHhhhcCCCEEEEeccCC
Q 020073          162 KRVGIVGLGNIGLQVAKR--LQAFGCNVL-YNSRSKKPV-----P--YAFYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~--l~~~G~~V~-~~~~~~~~~-----~--~~~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      .+++|||+|.+|+.+++.  ....|++++ ++|..+...     +  .....++++++++.|+|++|+|..
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs~  156 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPAV  156 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCHH
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCch
Confidence            469999999999999994  445688775 567766541     1  223567889887779999999853

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.09  E-value=0.0004  Score=65.11  Aligned_cols=63  Identities=25%  Similarity=0.482  Sum_probs=49.5

Q ss_pred             ceEEEEecChHHHHHHHHHhhC-CCEEE-EECCCCCC-------CCc-cccCCHHhhhc--CCCEEEEeccCChh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF-GCNVL-YNSRSKKP-------VPY-AFYSNVCELAA--NSDALIICCALTDQ  224 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~-------~~~-~~~~~l~ell~--~aDiV~l~~P~t~~  224 (331)
                      .+|||||+|.||+..++.+... +++++ ++|+++..       .+. ..+.++++++.  +.|+|++|+|....
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   77 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTH   77 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcch
Confidence            4799999999999999999875 67776 67887543       122 24679999998  79999999986543

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=97.05  E-value=0.0016  Score=60.65  Aligned_cols=100  Identities=11%  Similarity=0.121  Sum_probs=64.6

Q ss_pred             ceEEEEecChHHH-HHHHHHhhCCCEE-EEECCCCCC-------C-CccccCCHHhhhc--CCCEEEEeccCChhhhhhc
Q 020073          162 KRVGIVGLGNIGL-QVAKRLQAFGCNV-LYNSRSKKP-------V-PYAFYSNVCELAA--NSDALIICCALTDQTRRMI  229 (331)
Q Consensus       162 ~~vgIiG~G~IG~-~~A~~l~~~G~~V-~~~~~~~~~-------~-~~~~~~~l~ell~--~aDiV~l~~P~t~~t~~li  229 (331)
                      .++||||+|.+|. .+++.++..|++| .++|+++..       . ....+.+++++++  +.|+|++|+|........ 
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~-   83 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAELA-   83 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHHHH-
T ss_pred             cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHHHH-
Confidence            4899999999996 6778777678986 578887765       1 2345679999987  689999999865332222 


Q ss_pred             cHHHHhcCCCCc-EEEEc-CCCCccCHHHHHHHHHhCCc
Q 020073          230 NREVMLALGKEG-IIVNV-GRGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       230 ~~~~l~~mk~ga-~lIn~-srg~~vd~~al~~aL~~~~i  266 (331)
                          ...++.|. +++.- ---.+-+.++|+++.++..+
T Consensus        84 ----~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~  118 (336)
T 2p2s_A           84 ----LRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGR  118 (336)
T ss_dssp             ----HHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCC
T ss_pred             ----HHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence                22344554 55542 11222344556666655443

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=97.05  E-value=0.00095  Score=62.81  Aligned_cols=63  Identities=17%  Similarity=0.190  Sum_probs=48.8

Q ss_pred             ceEEEEecChHHHH-HHHHHhhC-CCEEE-EECCCCCC-----CCccccCCHHhhhcC--CCEEEEeccCChh
Q 020073          162 KRVGIVGLGNIGLQ-VAKRLQAF-GCNVL-YNSRSKKP-----VPYAFYSNVCELAAN--SDALIICCALTDQ  224 (331)
Q Consensus       162 ~~vgIiG~G~IG~~-~A~~l~~~-G~~V~-~~~~~~~~-----~~~~~~~~l~ell~~--aDiV~l~~P~t~~  224 (331)
                      .++||||+|.||+. .++.++.. +++|+ ++++++..     .+...+.++++++.+  .|+|++|+|....
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H   80 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTH   80 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSCTTTH
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEeCChHHH
Confidence            58999999999997 78888765 67875 67776543     233456899999976  8999999987644

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=97.05  E-value=0.014  Score=53.97  Aligned_cols=98  Identities=20%  Similarity=0.141  Sum_probs=73.6

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCC--------ccccCCHHhhhcCCCEEEEecc-C------
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVP--------YAFYSNVCELAANSDALIICCA-L------  221 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~--------~~~~~~l~ell~~aDiV~l~~P-~------  221 (331)
                      .+.|.+|+++|= +++.++.+..+..+|++|.+..+..-...        .....+++++++++|+|..-.= .      
T Consensus       151 ~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~  230 (301)
T 2ef0_A          151 GLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAE  230 (301)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC-------
T ss_pred             CcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCcccc
Confidence            378999999995 99999999999999999998887543211        3346789999999999998432 0      


Q ss_pred             -Ch--h--hhhhccHHHHhcCCCCcEEEEcC---CCCccCHH
Q 020073          222 -TD--Q--TRRMINREVMLALGKEGIIVNVG---RGAVIDEN  255 (331)
Q Consensus       222 -t~--~--t~~li~~~~l~~mk~ga~lIn~s---rg~~vd~~  255 (331)
                       ..  +  ...-++++.++++|++++|.-+.   ||.=|+.+
T Consensus       231 ~~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~~e  272 (301)
T 2ef0_A          231 REKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTEE  272 (301)
T ss_dssp             -CHHHHHTTTCCBCHHHHTTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             hhHHHHHhhccccCHHHHHhcCCCcEEECCCCCCCCCccCHH
Confidence             00  1  12456999999999999999886   56545443

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=97.05  E-value=0.0012  Score=61.22  Aligned_cols=86  Identities=14%  Similarity=0.254  Sum_probs=56.5

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCCC------------CccccCCHHhhhcCCCEEEEeccCC----
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKPV------------PYAFYSNVCELAANSDALIICCALT----  222 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~------------~~~~~~~l~ell~~aDiV~l~~P~t----  222 (331)
                      .++|+|||.|.||..+|..+...|.  +|..+|...+..            ......++ +.+++||+|+++....    
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~   92 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQ   92 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----C
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCC
Confidence            3789999999999999999887777  899999876320            11122466 7799999999997221    


Q ss_pred             ------hhhhhhccHHH---HhcCCCCcEEEEcCC
Q 020073          223 ------DQTRRMINREV---MLALGKEGIIVNVGR  248 (331)
Q Consensus       223 ------~~t~~li~~~~---l~~mk~ga~lIn~sr  248 (331)
                            .++..++ ++.   +....|.+++|+++-
T Consensus        93 tR~dl~~~n~~i~-~~i~~~i~~~~p~a~iiv~sN  126 (303)
T 2i6t_A           93 SYLDVVQSNVDMF-RALVPALGHYSQHSVLLVASQ  126 (303)
T ss_dssp             CHHHHHHHHHHHH-HHHHHHHHHHTTTCEEEECSS
T ss_pred             CHHHHHHHHHHHH-HHHHHHHHHhCCCeEEEEcCC
Confidence                  1111111 122   222348899998875

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=97.02  E-value=0.01  Score=54.95  Aligned_cols=90  Identities=19%  Similarity=0.243  Sum_probs=67.0

Q ss_pred             cCCCceEEEEecC---hHHHHHHHHHhhCCCEEEEECCCCCC---CCccccCCHHhhhcCCCEEEEeccCC---------
Q 020073          158 KLGGKRVGIVGLG---NIGLQVAKRLQAFGCNVLYNSRSKKP---VPYAFYSNVCELAANSDALIICCALT---------  222 (331)
Q Consensus       158 ~l~g~~vgIiG~G---~IG~~~A~~l~~~G~~V~~~~~~~~~---~~~~~~~~l~ell~~aDiV~l~~P~t---------  222 (331)
                      .+.|.+|++||=|   ++.++.+..+..+|++|.+..+..-.   .......+++|+++++|+|..-.--.         
T Consensus       144 ~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~g~~~d~~eav~~aDvvyt~~~q~er~~~~~~~  223 (304)
T 3r7f_A          144 TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLLRIQNERHQSAVSQ  223 (304)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTCSSCEECCHHHHHHHCSEEEECCCCTTTCCSSCCS
T ss_pred             CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCcchhhcCccCCHHHHhCCCCEEEeccchhhccccchhH
Confidence            3789999999964   79999999999999999988764211   11123468999999999998742111         


Q ss_pred             -h-hhhhhccHHHHhcCCCCcEEEEcC
Q 020073          223 -D-QTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       223 -~-~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                       + ....-++.+.++++|++++|.-+.
T Consensus       224 ~~~~~~y~v~~~~l~~a~~~ai~mHcl  250 (304)
T 3r7f_A          224 EGYLNKYGLTVERAERMKRHAIIMHPA  250 (304)
T ss_dssp             TTHHHHHSBCHHHHTTSCTTCEEECCS
T ss_pred             HHHhCCCccCHHHHhhcCCCCEEECCC
Confidence             0 112457999999999999998774

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=97.00  E-value=0.00058  Score=64.03  Aligned_cols=63  Identities=22%  Similarity=0.395  Sum_probs=49.6

Q ss_pred             ceEEEEecChHHHHHHHHHh-h-CCCEEE-EECCCCCC-------CC--ccccCCHHhhhcC--CCEEEEeccCChh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQ-A-FGCNVL-YNSRSKKP-------VP--YAFYSNVCELAAN--SDALIICCALTDQ  224 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~-~-~G~~V~-~~~~~~~~-------~~--~~~~~~l~ell~~--aDiV~l~~P~t~~  224 (331)
                      .++||||+|.||+..++.++ . -+++++ ++++++..       .+  ...+.++++++++  .|+|++|+|....
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   79 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAH   79 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhH
Confidence            47999999999999999998 4 477876 67877543       23  3457899999976  9999999986543

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=97.00  E-value=0.0036  Score=57.64  Aligned_cols=103  Identities=21%  Similarity=0.234  Sum_probs=69.8

Q ss_pred             CceEEEEec-ChHHHHHHHHHhhCCCEEE-EECCCCC--C-CCccccCCHHhhhc--CCCEEEEeccCChhhhhhccHHH
Q 020073          161 GKRVGIVGL-GNIGLQVAKRLQAFGCNVL-YNSRSKK--P-VPYAFYSNVCELAA--NSDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       161 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~~~~~~--~-~~~~~~~~l~ell~--~aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      ..+|+|+|+ |++|+.+++.++..|++++ .+++...  . .+...+.+++++..  ..|++++++|.. .+...+.+ .
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~-~~~~~~~e-a   84 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAP-AAADAALE-A   84 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCHH-HHHHHHHH-H
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCceECCEEeeCCHHHHhhcCCCCEEEEecCHH-HHHHHHHH-H
Confidence            468999998 9999999999998899854 5666541  2 34555778999998  899999999843 44444422 2


Q ss_pred             HhcCCCCcEEEEcCCCC-ccCHHHHHHHHHhCCce
Q 020073          234 MLALGKEGIIVNVGRGA-VIDENEMVRCLVRGEIA  267 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~-~vd~~al~~aL~~~~i~  267 (331)
                      .+ .+-. .+|..+.|- .-+++.+.++.++..+.
T Consensus        85 ~~-~Gi~-~vVi~t~G~~~~~~~~l~~~a~~~gi~  117 (288)
T 1oi7_A           85 AH-AGIP-LIVLITEGIPTLDMVRAVEEIKALGSR  117 (288)
T ss_dssp             HH-TTCS-EEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             HH-CCCC-EEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            22 2222 244455552 23456788888876664

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.98  E-value=0.0014  Score=61.13  Aligned_cols=62  Identities=18%  Similarity=0.341  Sum_probs=46.1

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC-----------CC-----ccccCCHHhhhcCCCEEEEeccCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP-----------VP-----YAFYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~-----------~~-----~~~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      .++|+|||.|.||..+|..++..|.  +|+.+|++.+.           ..     .....+..+.+++||+|+++.|..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~   85 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN   85 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence            3689999999999999999976665  89999987532           00     000123457899999999997643

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=96.97  E-value=0.00085  Score=63.39  Aligned_cols=64  Identities=23%  Similarity=0.345  Sum_probs=50.4

Q ss_pred             CceEEEEecChHHHHHHHHHh-h-CCCEEE-EECCCCCC-------CC--ccccCCHHhhhc--CCCEEEEeccCChh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQ-A-FGCNVL-YNSRSKKP-------VP--YAFYSNVCELAA--NSDALIICCALTDQ  224 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~-~-~G~~V~-~~~~~~~~-------~~--~~~~~~l~ell~--~aDiV~l~~P~t~~  224 (331)
                      ..++||||+|.||+..++.+. . -+++++ ++|+++..       .+  ...+.++++++.  +.|+|++|+|....
T Consensus        23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h  100 (357)
T 3ec7_A           23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAH  100 (357)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred             eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence            468999999999999999988 4 377876 68887654       12  345689999987  48999999986543

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.96  E-value=0.00049  Score=65.29  Aligned_cols=81  Identities=20%  Similarity=0.174  Sum_probs=54.9

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------------CCccccCCHHhhhcCCCEEEEeccCChhhhhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------------VPYAFYSNVCELAANSDALIICCALTDQTRRM  228 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~l  228 (331)
                      .++|+|+|.|.+|+.+|+.|.. ..+|.+.+++.+.            .+.....++.++++++|+|++++|..-. . -
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~~-~-~   92 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFLG-F-K   92 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGGH-H-H
T ss_pred             ccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCccc-c-h
Confidence            3479999999999999999976 5788888876532            1111234578889999999999985421 1 1


Q ss_pred             ccHHHHhcCCCCcEEEEcC
Q 020073          229 INREVMLALGKEGIIVNVG  247 (331)
Q Consensus       229 i~~~~l~~mk~ga~lIn~s  247 (331)
                      +-+   ..++.|.-+++++
T Consensus        93 v~~---~~~~~g~~yvD~s  108 (365)
T 3abi_A           93 SIK---AAIKSKVDMVDVS  108 (365)
T ss_dssp             HHH---HHHHHTCEEEECC
T ss_pred             HHH---HHHhcCcceEeee
Confidence            111   1235566667765

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.95  E-value=0.00061  Score=67.06  Aligned_cols=104  Identities=19%  Similarity=0.157  Sum_probs=63.5

Q ss_pred             CCccCCCceEEEEecChHHHHHHHHHhhC-CCEEEEECCCCCC-----C--Ccc--c-----cCCHHhhhcCCCEEEEec
Q 020073          155 LGSKLGGKRVGIVGLGNIGLQVAKRLQAF-GCNVLYNSRSKKP-----V--PYA--F-----YSNVCELAANSDALIICC  219 (331)
Q Consensus       155 ~~~~l~g~~vgIiG~G~IG~~~A~~l~~~-G~~V~~~~~~~~~-----~--~~~--~-----~~~l~ell~~aDiV~l~~  219 (331)
                      .+..+.+++|+|+|.|.+|+.+++.|... |.+|.+++|+..+     .  +..  .     ..++.++++++|+|+.++
T Consensus        17 ~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~t   96 (467)
T 2axq_A           17 IEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLI   96 (467)
T ss_dssp             ------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECS
T ss_pred             cccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECC
Confidence            34568899999999999999999999987 7899999987543     0  111  0     124667788999999999


Q ss_pred             cCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073          220 ALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRG  264 (331)
Q Consensus       220 P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~  264 (331)
                      |..... . +...   .+++|..+++++--. -+...|.++.++.
T Consensus        97 p~~~~~-~-v~~a---~l~~g~~vvd~~~~~-p~~~~Ll~~Ak~a  135 (467)
T 2axq_A           97 PYTFHP-N-VVKS---AIRTKTDVVTSSYIS-PALRELEPEIVKA  135 (467)
T ss_dssp             CGGGHH-H-HHHH---HHHHTCEEEECSCCC-HHHHHHHHHHHHH
T ss_pred             chhhhH-H-HHHH---HHhcCCEEEEeecCC-HHHHHHHHHHHHc
Confidence            865221 1 2122   234566677764311 1234454444443

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.94  E-value=0.0019  Score=59.93  Aligned_cols=58  Identities=22%  Similarity=0.271  Sum_probs=46.0

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC---------C-------Cc--cccCCHHhhhcCCCEEEEecc
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP---------V-------PY--AFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~---------~-------~~--~~~~~l~ell~~aDiV~l~~P  220 (331)
                      ++|+|||.|.+|..+|..+...|. +|..+|...+.         .       ..  ....+. +.+++||+|+++.+
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g   79 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSG   79 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCC
Confidence            589999999999999999998886 89999987643         1       00  112456 78999999999984

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.94  E-value=0.00065  Score=65.82  Aligned_cols=83  Identities=18%  Similarity=0.171  Sum_probs=57.7

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc-------ccCCHHhh-hcCCCEEEEeccCChhhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA-------FYSNVCEL-AANSDALIICCALTDQTR  226 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~-------~~~~l~el-l~~aDiV~l~~P~t~~t~  226 (331)
                      +.+|.|+|+|++|+.+|+.|...|.+|++.++++..      .+..       ....|.++ +.++|+|+++++....+.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~   83 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL   83 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence            356999999999999999999999999999987653      1111       11124444 788999999998654443


Q ss_pred             hhccHHHHhcCCCCcEEEE
Q 020073          227 RMINREVMLALGKEGIIVN  245 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn  245 (331)
                      .+  ......+.+...+|-
T Consensus        84 ~i--~~~ar~~~p~~~Iia  100 (413)
T 3l9w_A           84 QL--TEMVKEHFPHLQIIA  100 (413)
T ss_dssp             HH--HHHHHHHCTTCEEEE
T ss_pred             HH--HHHHHHhCCCCeEEE
Confidence            33  334445566644443

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=96.94  E-value=0.018  Score=54.05  Aligned_cols=89  Identities=11%  Similarity=0.070  Sum_probs=67.2

Q ss_pred             CCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC---------------C--ccccCCHHhhhcCCCEEEEecc
Q 020073          159 LGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV---------------P--YAFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       159 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~---------------~--~~~~~~l~ell~~aDiV~l~~P  220 (331)
                      +.|.+|++|| .+++.++++..+..+|++|.+..+..-..               +  .....+++++++++|+|..-.=
T Consensus       177 l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~w  256 (340)
T 4ep1_A          177 FKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDVW  256 (340)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecCc
Confidence            7899999999 67899999999999999999887653221               1  1234689999999999987542


Q ss_pred             CC------hh-----hhhhccHHHHhcCCCCcEEEEcC
Q 020073          221 LT------DQ-----TRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       221 ~t------~~-----t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      ..      ++     ...-++.+.++.+|++++|.-+.
T Consensus       257 ~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcL  294 (340)
T 4ep1_A          257 MSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCL  294 (340)
T ss_dssp             ------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             cCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCC
Confidence            11      00     12357999999999999999876

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=96.94  E-value=0.00075  Score=66.05  Aligned_cols=61  Identities=16%  Similarity=0.179  Sum_probs=47.2

Q ss_pred             CCceEEEEecChH--HHHHHHHHhh----CCCEEEEECCCCCC----------C-----CccccCCHHhhhcCCCEEEEe
Q 020073          160 GGKRVGIVGLGNI--GLQVAKRLQA----FGCNVLYNSRSKKP----------V-----PYAFYSNVCELAANSDALIIC  218 (331)
Q Consensus       160 ~g~~vgIiG~G~I--G~~~A~~l~~----~G~~V~~~~~~~~~----------~-----~~~~~~~l~ell~~aDiV~l~  218 (331)
                      ++.+|+|||.|++  |..+++.+..    .| +|..+|+.++.          .     ......++++++++||+|+.+
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a   82 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS   82 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence            4579999999997  6788887764    46 99999987532          0     122346899999999999999


Q ss_pred             ccC
Q 020073          219 CAL  221 (331)
Q Consensus       219 ~P~  221 (331)
                      ++-
T Consensus        83 irv   85 (450)
T 3fef_A           83 ILP   85 (450)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            963

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=96.94  E-value=0.0022  Score=59.82  Aligned_cols=87  Identities=20%  Similarity=0.264  Sum_probs=59.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC-C---------------Ccccc-CCHHhhhcCCCEEEEeccCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP-V---------------PYAFY-SNVCELAANSDALIICCALT  222 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~-~---------------~~~~~-~~l~ell~~aDiV~l~~P~t  222 (331)
                      ++|+|||.|.||..+|..+...|.  +|..+|..... .               ..... .+..+.+++||+|+++.+..
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~   80 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP   80 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence            379999999999999999987676  89999987753 0               00111 24568899999999998543


Q ss_pred             hh-----------hhhhcc--HHHHhcCCCCcEEEEcCC
Q 020073          223 DQ-----------TRRMIN--REVMLALGKEGIIVNVGR  248 (331)
Q Consensus       223 ~~-----------t~~li~--~~~l~~mk~ga~lIn~sr  248 (331)
                      ..           +..++.  .+.+....|.+++++++-
T Consensus        81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN  119 (314)
T 3nep_X           81 RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN  119 (314)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred             CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence            11           111221  123344578899999983

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=96.93  E-value=0.026  Score=52.36  Aligned_cols=90  Identities=16%  Similarity=0.110  Sum_probs=68.2

Q ss_pred             cCCCceEEEEecC--hHHHHHHHHHhhCCCEEEEECCCCCC-C--------------C--ccccCCHHhhhcCCCEEEEe
Q 020073          158 KLGGKRVGIVGLG--NIGLQVAKRLQAFGCNVLYNSRSKKP-V--------------P--YAFYSNVCELAANSDALIIC  218 (331)
Q Consensus       158 ~l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~-~--------------~--~~~~~~l~ell~~aDiV~l~  218 (331)
                      .+.|.+|++||=|  ++.++++..+..+|++|.+..+..-. .              +  .....+++++++++|+|..-
T Consensus       145 ~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~  224 (307)
T 2i6u_A          145 ALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTD  224 (307)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEec
Confidence            3789999999975  99999999999999999988775422 1              1  22357899999999999984


Q ss_pred             cc-C------Ch---h--hhhhccHHHHhcCCCCcEEEEcC
Q 020073          219 CA-L------TD---Q--TRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       219 ~P-~------t~---~--t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      .= .      .+   +  ...-++++.++++|++++|.-+.
T Consensus       225 ~w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  265 (307)
T 2i6u_A          225 TWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCL  265 (307)
T ss_dssp             CSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECS
T ss_pred             ceecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCC
Confidence            32 0      00   0  23456899999999999988774

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.92  E-value=0.0023  Score=55.51  Aligned_cols=88  Identities=13%  Similarity=0.185  Sum_probs=60.2

Q ss_pred             CceEEEEe-cChHHHHHHHHHh-hCCCEEEEECCCCC-C--------C-------CccccCCHHhhhcCCCEEEEeccCC
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQ-AFGCNVLYNSRSKK-P--------V-------PYAFYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~-~~G~~V~~~~~~~~-~--------~-------~~~~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      .|++.|.| .|.||+++++.|. ..|++|++.+|+.. .        .       +.....+++++++.+|+|+.+....
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~   84 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMES   84 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCC
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCC
Confidence            36799999 6999999999999 89999999988765 2        0       1111235677889999999988643


Q ss_pred             hhhhhhccHHHHhcCCC-C-cEEEEcCCCCcc
Q 020073          223 DQTRRMINREVMLALGK-E-GIIVNVGRGAVI  252 (331)
Q Consensus       223 ~~t~~li~~~~l~~mk~-g-a~lIn~srg~~v  252 (331)
                      . ..   ....+..|+. + ..+|++|.....
T Consensus        85 n-~~---~~~~~~~~~~~~~~~iv~iSs~~~~  112 (221)
T 3r6d_A           85 G-SD---MASIVKALSRXNIRRVIGVSMAGLS  112 (221)
T ss_dssp             H-HH---HHHHHHHHHHTTCCEEEEEEETTTT
T ss_pred             C-hh---HHHHHHHHHhcCCCeEEEEeeceec
Confidence            1 11   3344444532 2 367888765543

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.92  E-value=0.003  Score=59.16  Aligned_cols=89  Identities=12%  Similarity=0.199  Sum_probs=59.4

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCCC----------------Ccc--ccCCHHhhhcCCCEEEEec
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKPV----------------PYA--FYSNVCELAANSDALIICC  219 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~----------------~~~--~~~~l~ell~~aDiV~l~~  219 (331)
                      ...++|+|||.|.+|..+|..+...|. +|..+|+..+..                ...  ...+. +.+++||+|+++.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaa   83 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTA   83 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECC
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEcc
Confidence            356799999999999999999988787 999999877530                111  12344 7899999999997


Q ss_pred             cCC--h-hhh-hhc--cH-------HHHhcCCCCcEEEEcCC
Q 020073          220 ALT--D-QTR-RMI--NR-------EVMLALGKEGIIVNVGR  248 (331)
Q Consensus       220 P~t--~-~t~-~li--~~-------~~l~~mk~ga~lIn~sr  248 (331)
                      +..  + .|+ .++  |.       +.+....|.+++++++-
T Consensus        84 g~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN  125 (324)
T 3gvi_A           84 GVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN  125 (324)
T ss_dssp             SCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence            422  1 111 011  11       12223358899999874

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.91  E-value=0.0017  Score=57.19  Aligned_cols=91  Identities=15%  Similarity=0.049  Sum_probs=61.9

Q ss_pred             CCCceEEEEe-cChHHHHHHHHHhhCC-CEEEEECCCCCCC------Cc-------cccCCHHhhhcCCCEEEEeccCCh
Q 020073          159 LGGKRVGIVG-LGNIGLQVAKRLQAFG-CNVLYNSRSKKPV------PY-------AFYSNVCELAANSDALIICCALTD  223 (331)
Q Consensus       159 l~g~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~------~~-------~~~~~l~ell~~aDiV~l~~P~t~  223 (331)
                      ...+++.|.| .|.||+++++.|...| ++|++++|+....      ..       ....+++++++.+|+|+.+.....
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~  100 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGED  100 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTT
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCc
Confidence            4468999999 7999999999999999 8999998875431      11       112356778999999998876433


Q ss_pred             hhhhhccHHHHhcCCC--CcEEEEcCCCCc
Q 020073          224 QTRRMINREVMLALGK--EGIIVNVGRGAV  251 (331)
Q Consensus       224 ~t~~li~~~~l~~mk~--ga~lIn~srg~~  251 (331)
                      ..  ......+..|+.  ...||++|....
T Consensus       101 ~~--~~~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A          101 LD--IQANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             HH--HHHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             hh--HHHHHHHHHHHHcCCCEEEEEeccee
Confidence            21  112334444432  247899888554

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.91  E-value=0.0018  Score=59.86  Aligned_cols=108  Identities=20%  Similarity=0.230  Sum_probs=69.5

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC-----------C-----C--ccccCCHHhhhcCCCEEEEeccC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP-----------V-----P--YAFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~-----------~-----~--~~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      ++|+|||.|.+|..+|..|...|.  +|..+|+.++.           .     .  .....+ .+.+++||+|+++.+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~   79 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence            379999999999999999987777  89999987642           0     0  011235 7899999999999753


Q ss_pred             C--h-hhh-hhc--cH-------HHHhcCCCCcEEEEcCCCCccCHHHHHHHHH----hCCceEEE--ee
Q 020073          222 T--D-QTR-RMI--NR-------EVMLALGKEGIIVNVGRGAVIDENEMVRCLV----RGEIAGAG--LD  272 (331)
Q Consensus       222 t--~-~t~-~li--~~-------~~l~~mk~ga~lIn~srg~~vd~~al~~aL~----~~~i~ga~--lD  272 (331)
                      .  + .++ .++  |.       +.+....|.+++++++  ..+|.-..+-.-.    ..++.|.+  ||
T Consensus        80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~t~~~~k~~g~p~~rviG~gt~LD  147 (294)
T 1oju_A           80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMTYIMWKESGKPRNEVFGMGNQLD  147 (294)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHHHHHHHHSCCCTTSEEECSHHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHHHHHHHHhcCCCHHHEeecccccH
Confidence            2  1 111 111  11       2344457899999998  4555443322211    34566664  55

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=96.90  E-value=0.0014  Score=61.27  Aligned_cols=63  Identities=19%  Similarity=0.237  Sum_probs=49.8

Q ss_pred             CCceEEEEecChHHH-HHHHHHhhC-CCEEE-EECCCCCCCCccccCCHHhhhcC---CCEEEEeccCC
Q 020073          160 GGKRVGIVGLGNIGL-QVAKRLQAF-GCNVL-YNSRSKKPVPYAFYSNVCELAAN---SDALIICCALT  222 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~-~~A~~l~~~-G~~V~-~~~~~~~~~~~~~~~~l~ell~~---aDiV~l~~P~t  222 (331)
                      +-.++||||+|.||+ ..++.++.. +++|+ +++++.+..+...+.++++++..   .|+|++++|..
T Consensus        24 ~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~~g~~~~~~~~~ll~~~~~vD~V~i~tp~~   92 (330)
T 4ew6_A           24 SPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTVEGVNSYTTIEAMLDAEPSIDAVSLCMPPQ   92 (330)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCCTTSEEESSHHHHHHHCTTCCEEEECSCHH
T ss_pred             CCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhhcCCCccCCHHHHHhCCCCCCEEEEeCCcH
Confidence            446899999999998 788888875 67765 57777665555567899999865   89999999844

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=96.88  E-value=0.018  Score=54.18  Aligned_cols=89  Identities=16%  Similarity=0.151  Sum_probs=65.1

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC-C--------------C--ccccCCHHhhhcCCCEEEEec
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP-V--------------P--YAFYSNVCELAANSDALIICC  219 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~--------------~--~~~~~~l~ell~~aDiV~l~~  219 (331)
                      .+.|.+|++|| .+++..+++..+..+|++|.+..+..-. .              +  .....+++ +++++|+|..-+
T Consensus       172 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDvvytd~  250 (339)
T 4a8t_A          172 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  250 (339)
T ss_dssp             CGGGCEEEEESSCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh-HHcCCCEEEecC
Confidence            58899999999 6899999999999999999988765322 1              1  12346889 999999999632


Q ss_pred             --cCC------hh----h--hhhccHHHHhcCCCCcEEEEcC
Q 020073          220 --ALT------DQ----T--RRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       220 --P~t------~~----t--~~li~~~~l~~mk~ga~lIn~s  247 (331)
                        +..      .+    .  ..-++.+.++++|++++|.-+.
T Consensus       251 w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcL  292 (339)
T 4a8t_A          251 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  292 (339)
T ss_dssp             SSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             cccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence              100      11    1  1446888888888888888764

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.87  E-value=0.0029  Score=53.68  Aligned_cols=62  Identities=24%  Similarity=0.302  Sum_probs=47.7

Q ss_pred             CceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCC------Cc-------cccCCHHhhhcCCCEEEEeccCC
Q 020073          161 GKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPV------PY-------AFYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       161 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~-------~~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      ++++.|.|. |.||+.+++.|...|.+|++.+|+....      ..       ....++.++++.+|+|+.+....
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~   78 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence            478999997 9999999999999999999998875431      11       11134667889999999887643

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=96.86  E-value=0.0012  Score=61.99  Aligned_cols=63  Identities=17%  Similarity=0.274  Sum_probs=46.3

Q ss_pred             ceEEEEecChHHHH-HHH-HHh-hCCCEEE-EECCCCCC-------CCccccCCHHhhhcC--CCEEEEeccCChh
Q 020073          162 KRVGIVGLGNIGLQ-VAK-RLQ-AFGCNVL-YNSRSKKP-------VPYAFYSNVCELAAN--SDALIICCALTDQ  224 (331)
Q Consensus       162 ~~vgIiG~G~IG~~-~A~-~l~-~~G~~V~-~~~~~~~~-------~~~~~~~~l~ell~~--aDiV~l~~P~t~~  224 (331)
                      .++||||+|.||+. .++ .+. .-+++|+ ++++++..       .+...+.++++++.+  .|+|++|+|....
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   78 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH   78 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGH
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHH
Confidence            47999999999996 555 333 3477876 78887653       123446799999986  8999999986643

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=96.85  E-value=0.00084  Score=63.47  Aligned_cols=62  Identities=16%  Similarity=0.234  Sum_probs=47.7

Q ss_pred             CceEEEEecChHHHH-HHHHHhhC-CCEEE-EECCCCCC-------C-CccccCCHHhhhcC--CCEEEEeccCC
Q 020073          161 GKRVGIVGLGNIGLQ-VAKRLQAF-GCNVL-YNSRSKKP-------V-PYAFYSNVCELAAN--SDALIICCALT  222 (331)
Q Consensus       161 g~~vgIiG~G~IG~~-~A~~l~~~-G~~V~-~~~~~~~~-------~-~~~~~~~l~ell~~--aDiV~l~~P~t  222 (331)
                      ..+|||||+|.||+. +++.++.. +++++ ++|+++..       . ....+.++++++.+  .|+|++|+|..
T Consensus         5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~   79 (359)
T 3m2t_A            5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQ   79 (359)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHH
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcH
Confidence            358999999999995 88988876 67876 67887543       1 22346799999975  49999999854

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=96.84  E-value=0.0049  Score=57.17  Aligned_cols=105  Identities=18%  Similarity=0.233  Sum_probs=72.7

Q ss_pred             CCCceEEEE-ec-ChHHHHHHHHHhhCCCEEE-EECCCCC--C-CCccccCCHHhhhc--CCCEEEEeccCChhhhhhcc
Q 020073          159 LGGKRVGIV-GL-GNIGLQVAKRLQAFGCNVL-YNSRSKK--P-VPYAFYSNVCELAA--NSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       159 l~g~~vgIi-G~-G~IG~~~A~~l~~~G~~V~-~~~~~~~--~-~~~~~~~~l~ell~--~aDiV~l~~P~t~~t~~li~  230 (331)
                      +..++++|| |+ |+.|+.+++.++..|++++ .+++...  . .+...+.+++++.+  ..|++++++|.. .....+.
T Consensus        11 ~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~vD~avI~vP~~-~~~~~~~   89 (305)
T 2fp4_A           11 VDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPP-FAAAAIN   89 (305)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHH-HHHHHHH
T ss_pred             hCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcceECCeeeechHHHhhhcCCCCEEEEecCHH-HHHHHHH
Confidence            556789998 98 9999999999999999854 5666532  2 45555678999998  899999999854 3344442


Q ss_pred             HHHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHhC-Cce
Q 020073          231 REVMLALGKEGIIVNVGRGAV-IDENEMVRCLVRG-EIA  267 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~srg~~-vd~~al~~aL~~~-~i~  267 (331)
                      + .++. .- ..+|+.+-|-- -++..+.+..++. .+.
T Consensus        90 e-~i~~-Gi-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~  125 (305)
T 2fp4_A           90 E-AIDA-EV-PLVVCITEGIPQQDMVRVKHRLLRQGKTR  125 (305)
T ss_dssp             H-HHHT-TC-SEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred             H-HHHC-CC-CEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence            2 2221 22 24466777643 2344788888887 664

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=96.82  E-value=0.0022  Score=60.50  Aligned_cols=101  Identities=17%  Similarity=0.187  Sum_probs=66.3

Q ss_pred             ceEEEEecChHHHHHHHHHhhC-CCEEE-EECCCCCC-------CC----ccccCCHHhhhc--CCCEEEEeccCChhhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF-GCNVL-YNSRSKKP-------VP----YAFYSNVCELAA--NSDALIICCALTDQTR  226 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~-------~~----~~~~~~l~ell~--~aDiV~l~~P~t~~t~  226 (331)
                      .++||||+|.||+.+++.+... +++++ +++++...       .+    ...+.++++++.  +.|+|++++|......
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   86 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   86 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHHH
Confidence            5899999999999999998865 56764 67876543       12    234678999986  5999999998553322


Q ss_pred             hhccHHHHhcCCCCc-EEEEcC-CCCccCHHHHHHHHHhCCce
Q 020073          227 RMINREVMLALGKEG-IIVNVG-RGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       227 ~li~~~~l~~mk~ga-~lIn~s-rg~~vd~~al~~aL~~~~i~  267 (331)
                      .     ....++.|. +++.-- --.+-+.++|.++.++..+.
T Consensus        87 ~-----~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~  124 (362)
T 1ydw_A           87 W-----AIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  124 (362)
T ss_dssp             H-----HHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             H-----HHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCE
Confidence            1     123356665 555421 12223446678877776654

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=96.82  E-value=0.015  Score=54.54  Aligned_cols=90  Identities=13%  Similarity=0.028  Sum_probs=68.7

Q ss_pred             cCCCceEEEEecC--hHHHHHHHHHhhCCCEEEEECCCCCC-C--------------C--ccccCCHHhhhcCCCEEEEe
Q 020073          158 KLGGKRVGIVGLG--NIGLQVAKRLQAFGCNVLYNSRSKKP-V--------------P--YAFYSNVCELAANSDALIIC  218 (331)
Q Consensus       158 ~l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~-~--------------~--~~~~~~l~ell~~aDiV~l~  218 (331)
                      .+.|.+|++||=|  +++.+++..+..+|++|.+..+..-. .              +  .....+++++++++|+|..-
T Consensus       152 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (335)
T 1dxh_A          152 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD  231 (335)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeC
Confidence            4789999999975  99999999999999999988764321 1              1  22357899999999999884


Q ss_pred             ccC--------Chh-----hhhhccHHHHhcC-CCCcEEEEcC
Q 020073          219 CAL--------TDQ-----TRRMINREVMLAL-GKEGIIVNVG  247 (331)
Q Consensus       219 ~P~--------t~~-----t~~li~~~~l~~m-k~ga~lIn~s  247 (331)
                      .=.        ..+     ...-++.+.++++ ||+++|.-+.
T Consensus       232 ~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcL  274 (335)
T 1dxh_A          232 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  274 (335)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             CccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCC
Confidence            320        011     1245799999999 9999998874

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.79  E-value=0.0022  Score=60.07  Aligned_cols=94  Identities=22%  Similarity=0.287  Sum_probs=60.9

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC---------C--C----ccccCCHHhhhcCCCEEEEeccC
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP---------V--P----YAFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~---------~--~----~~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      -.+++|+|||.|.||..+|..+...|.  ++..+|...+.         .  .    .....+..+.+++||+|+++...
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~   86 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA   86 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence            346799999999999999999987776  89999986542         0  1    11123446789999999998743


Q ss_pred             C--h-hhh-hhc--c-------HHHHhcCCCCcEEEEcCCCCccCH
Q 020073          222 T--D-QTR-RMI--N-------REVMLALGKEGIIVNVGRGAVIDE  254 (331)
Q Consensus       222 t--~-~t~-~li--~-------~~~l~~mk~ga~lIn~srg~~vd~  254 (331)
                      .  + .|+ .++  |       .+.+....|.+++++++  ..+|.
T Consensus        87 ~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt--NPvdi  130 (326)
T 3vku_A           87 PQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA--NPVDI  130 (326)
T ss_dssp             C----------------CHHHHHHHHHTTTCCSEEEECS--SSHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc--CchHH
Confidence            2  1 111 122  1       12334456889999996  34443

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.78  E-value=0.0011  Score=64.77  Aligned_cols=63  Identities=21%  Similarity=0.150  Sum_probs=48.3

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CC-cc----cc---CCHHhhhcCCCEEEEeccCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VP-YA----FY---SNVCELAANSDALIICCALT  222 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~-~~----~~---~~l~ell~~aDiV~l~~P~t  222 (331)
                      .+++++|+|.|.||+.+++.|...|.+|.+++|+..+       .+ ..    ..   .++.++++++|+|+.++|..
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~   79 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT   79 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence            4689999999999999999999999999999987532       11 11    11   24567888999999999864

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.77  E-value=0.0015  Score=62.09  Aligned_cols=60  Identities=22%  Similarity=0.243  Sum_probs=46.7

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC-----Ccc------ccCCHHhhhcCCCEEEE
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV-----PYA------FYSNVCELAANSDALII  217 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----~~~------~~~~l~ell~~aDiV~l  217 (331)
                      .+.+++|+|+|.|.+|+.+++.++.+|++|+++++.+...     ...      ....+.++++++|+|+.
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~   79 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITY   79 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence            4678999999999999999999999999999998765431     100      11236677888998866

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=96.77  E-value=0.026  Score=52.64  Aligned_cols=90  Identities=16%  Similarity=0.161  Sum_probs=66.9

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC-C--------------C--ccccCCHHhhhcCCCEEEEec
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP-V--------------P--YAFYSNVCELAANSDALIICC  219 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~--------------~--~~~~~~l~ell~~aDiV~l~~  219 (331)
                      .+.|.+|++|| .+++..+.+..+..+|++|.+..+..-. .              +  .....+++++++++|+|..-.
T Consensus       154 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~  233 (323)
T 3gd5_A          154 RLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDV  233 (323)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEec
Confidence            37899999999 6889999999999999999988765322 1              1  123568999999999988754


Q ss_pred             cCC--h--------h--hhhhccHHHHhcCCCCcEEEEcC
Q 020073          220 ALT--D--------Q--TRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       220 P~t--~--------~--t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      =..  .        +  ...-++.+.++.+|++++|.-+.
T Consensus       234 wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHcl  273 (323)
T 3gd5_A          234 WTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCL  273 (323)
T ss_dssp             CC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             eecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCC
Confidence            111  0        0  12357899999999999988764

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=96.77  E-value=0.021  Score=53.89  Aligned_cols=89  Identities=15%  Similarity=0.129  Sum_probs=65.8

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC-C--------------C--ccccCCHHhhhcCCCEEEEec
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP-V--------------P--YAFYSNVCELAANSDALIICC  219 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~--------------~--~~~~~~l~ell~~aDiV~l~~  219 (331)
                      .+.|.+|++|| .+++..+++..+..+|++|.+..+..-. .              +  .....+++ +++++|+|..-+
T Consensus       150 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-av~~aDVVytd~  228 (355)
T 4a8p_A          150 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  228 (355)
T ss_dssp             CGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG-GGTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH-HHcCCCEEEecc
Confidence            58899999999 6899999999999999999988765322 1              1  12346889 999999999632


Q ss_pred             ----cC---C-hh----h--hhhccHHHHhcCCCCcEEEEcC
Q 020073          220 ----AL---T-DQ----T--RRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       220 ----P~---t-~~----t--~~li~~~~l~~mk~ga~lIn~s  247 (331)
                          ..   . .+    .  ..-++.+.++++|++++|.-+.
T Consensus       229 w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcL  270 (355)
T 4a8p_A          229 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  270 (355)
T ss_dssp             SSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             cccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence                10   0 11    1  1446888898899999988775

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.76  E-value=0.0043  Score=58.01  Aligned_cols=95  Identities=19%  Similarity=0.226  Sum_probs=61.4

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC---------C-------Ccccc-CCHHhhhcCCCEEEEeccC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP---------V-------PYAFY-SNVCELAANSDALIICCAL  221 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~---------~-------~~~~~-~~l~ell~~aDiV~l~~P~  221 (331)
                      ..++|+|||.|.+|..+|..+...|+ +|..+|..++.         .       ..... .+-.+.+++||+|+++.+.
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~   83 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGV   83 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCc
Confidence            35789999999999999999987677 99999987653         1       01111 1225789999999999743


Q ss_pred             C--h-hhhh-hc--cH-------HHHhcCCCCcEEEEcCCCCccCHHH
Q 020073          222 T--D-QTRR-MI--NR-------EVMLALGKEGIIVNVGRGAVIDENE  256 (331)
Q Consensus       222 t--~-~t~~-li--~~-------~~l~~mk~ga~lIn~srg~~vd~~a  256 (331)
                      .  + .++. ++  |.       +.+....|.+++++++  ..+|.-.
T Consensus        84 p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~t  129 (321)
T 3p7m_A           84 PRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT--NPLDIMV  129 (321)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHHH
T ss_pred             CCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec--CchHHHH
Confidence            2  1 1110 11  11       1223335889999995  4444433

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.76  E-value=0.001  Score=58.77  Aligned_cols=83  Identities=14%  Similarity=0.147  Sum_probs=55.9

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccc----c---CCHHhh-hcCCCEEEEeccCChhhhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAF----Y---SNVCEL-AANSDALIICCALTDQTRR  227 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~----~---~~l~el-l~~aDiV~l~~P~t~~t~~  227 (331)
                      .+++.|+|+|.+|+.+|+.|...|. |+++++++..     .+...    .   ..|.++ +.++|.|++++|....+  
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n--   85 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSET--   85 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHHTTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHH--
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHhcCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHH--
Confidence            4579999999999999999999999 9999987643     11111    1   224444 78999999998865333  


Q ss_pred             hccHHHHhcCCCC-cEEEEc
Q 020073          228 MINREVMLALGKE-GIIVNV  246 (331)
Q Consensus       228 li~~~~l~~mk~g-a~lIn~  246 (331)
                      +.-......+.+. .++..+
T Consensus        86 ~~~~~~a~~~~~~~~iia~~  105 (234)
T 2aef_A           86 IHCILGIRKIDESVRIIAEA  105 (234)
T ss_dssp             HHHHHHHHHHCSSSEEEEEC
T ss_pred             HHHHHHHHHHCCCCeEEEEE
Confidence            3333445556666 444444

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.74  E-value=0.0012  Score=62.52  Aligned_cols=85  Identities=27%  Similarity=0.330  Sum_probs=60.3

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCcc---ccCC---HHhhhcCCCEEEEeccCChhhh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYA---FYSN---VCELAANSDALIICCALTDQTR  226 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~---~~~~---l~ell~~aDiV~l~~P~t~~t~  226 (331)
                      .|++|.|+|.|.||..+++.++.+|++|++.+++..+       .+..   ...+   +.++....|+|+.++...... 
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~~-  265 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHPL-  265 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCCS-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHHH-
Confidence            5889999999999999999999999999998876543       1111   1112   334445678888887643221 


Q ss_pred             hhccHHHHhcCCCCcEEEEcCCC
Q 020073          227 RMINREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~srg  249 (331)
                          ...++.|+++..+|+++..
T Consensus       266 ----~~~~~~l~~~G~iv~~g~~  284 (366)
T 1yqd_A          266 ----LPLFGLLKSHGKLILVGAP  284 (366)
T ss_dssp             ----HHHHHHEEEEEEEEECCCC
T ss_pred             ----HHHHHHHhcCCEEEEEccC
Confidence                3456678888888888753

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.74  E-value=0.0031  Score=58.21  Aligned_cols=89  Identities=12%  Similarity=0.263  Sum_probs=58.1

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC-C--------------Ccc-cc-CCHHhhhcCCCEEEEeccC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP-V--------------PYA-FY-SNVCELAANSDALIICCAL  221 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~-~--------------~~~-~~-~~l~ell~~aDiV~l~~P~  221 (331)
                      .++|+|||.|.||..+|..|...|.  +|.+++++... .              ... .. .+ .+.++.+|+|+++++.
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~aD~Vii~v~~   85 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDADMVVITAGP   85 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCC-HHHhCCCCEEEECCCC
Confidence            4689999999999999999998898  99999987522 0              000 01 13 3567899999999953


Q ss_pred             Chh---hh--------hhcc--HHHHhcCCCCcEEEEcCCCC
Q 020073          222 TDQ---TR--------RMIN--REVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       222 t~~---t~--------~li~--~~~l~~mk~ga~lIn~srg~  250 (331)
                      ...   ++        .++.  .+.+....+++++|+++-|-
T Consensus        86 ~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~  127 (319)
T 1lld_A           86 RQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPV  127 (319)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCch
Confidence            211   10        1110  11222236788998886654

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=96.73  E-value=0.0077  Score=58.63  Aligned_cols=105  Identities=17%  Similarity=0.253  Sum_probs=70.5

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----CCc--c-------------------------ccCC
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----VPY--A-------------------------FYSN  204 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~~~--~-------------------------~~~~  204 (331)
                      +.++.|+||.|=|+|++|+.+|+.|...|++|+..+.+...    .+.  .                         .+.+
T Consensus       230 ~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~  309 (450)
T 4fcc_A          230 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLE  309 (450)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEE
T ss_pred             CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEec
Confidence            34689999999999999999999999999999865432110    000  0                         0001


Q ss_pred             HHhh-hcCCCEEEEeccCChhhhhhccHHHHhcCCCC--cEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          205 VCEL-AANSDALIICCALTDQTRRMINREVMLALGKE--GIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       205 l~el-l~~aDiV~l~~P~t~~t~~li~~~~l~~mk~g--a~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      -+++ -..|||.+=|.     +.+.|+.+...+++..  .++++.+-+.+-.+.  .+.|.+..|.
T Consensus       310 ~~~i~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~eA--~~iL~~rGIl  368 (450)
T 4fcc_A          310 GQQPWSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPTTIEA--TELFQQAGVL  368 (450)
T ss_dssp             TCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHH--HHHHHHTTCE
T ss_pred             CcccccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCCCHHH--HHHHHHCCCE
Confidence            1222 23589888663     5667888888888653  578888888765443  3567777775

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.72  E-value=0.0012  Score=62.12  Aligned_cols=88  Identities=9%  Similarity=0.063  Sum_probs=59.1

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC-----------CC------ccccCCHHhhhcCCCEEEEecc
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP-----------VP------YAFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~-----------~~------~~~~~~l~ell~~aDiV~l~~P  220 (331)
                      ..++|+|||.|.||..+|..+...|+  +|..+|...+.           ..      .....+.++ +++||+|+++..
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG   98 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG   98 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence            56899999999999999999987777  89999986542           00      011235554 999999999864


Q ss_pred             CC--h---------hhhhhcc--HHHHhcCCCCcEEEEcCC
Q 020073          221 LT--D---------QTRRMIN--REVMLALGKEGIIVNVGR  248 (331)
Q Consensus       221 ~t--~---------~t~~li~--~~~l~~mk~ga~lIn~sr  248 (331)
                      ..  +         .+..++.  .+.+....|.+++++++-
T Consensus        99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN  139 (330)
T 3ldh_A           99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE  139 (330)
T ss_dssp             CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence            32  1         1111221  123334478999999873

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=96.72  E-value=0.021  Score=52.69  Aligned_cols=90  Identities=14%  Similarity=0.122  Sum_probs=68.5

Q ss_pred             cCCCceEEEEec---ChHHHHHHHHHhhC-CCEEEEECCCCCC--------CC--ccccCCHHhhhcCCCEEEEeccCCh
Q 020073          158 KLGGKRVGIVGL---GNIGLQVAKRLQAF-GCNVLYNSRSKKP--------VP--YAFYSNVCELAANSDALIICCALTD  223 (331)
Q Consensus       158 ~l~g~~vgIiG~---G~IG~~~A~~l~~~-G~~V~~~~~~~~~--------~~--~~~~~~l~ell~~aDiV~l~~P~t~  223 (331)
                      .+.|.+|++||=   |++.++++..+..+ |++|.+..+..-.        .+  .....+++++++++|+|..-.=-.+
T Consensus       146 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~e  225 (299)
T 1pg5_A          146 TIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKE  225 (299)
T ss_dssp             CSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCST
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCcccc
Confidence            378999999996   69999999999999 9999988764321        12  1234689999999999988653321


Q ss_pred             ------hh-----hhhccHHHHhcCCCCcEEEEcC
Q 020073          224 ------QT-----RRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       224 ------~t-----~~li~~~~l~~mk~ga~lIn~s  247 (331)
                            +.     ..-++++.++++|++++|.-+.
T Consensus       226 r~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  260 (299)
T 1pg5_A          226 RFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  260 (299)
T ss_dssp             TSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             cccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCC
Confidence                  11     2456899999999999988764

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=96.71  E-value=0.0015  Score=61.65  Aligned_cols=63  Identities=16%  Similarity=0.187  Sum_probs=48.8

Q ss_pred             ceEEEEecChHHHH-HHHHHhhC-CCEEE-EECCCCCC----C-CccccCCHHhhhcC--CCEEEEeccCChh
Q 020073          162 KRVGIVGLGNIGLQ-VAKRLQAF-GCNVL-YNSRSKKP----V-PYAFYSNVCELAAN--SDALIICCALTDQ  224 (331)
Q Consensus       162 ~~vgIiG~G~IG~~-~A~~l~~~-G~~V~-~~~~~~~~----~-~~~~~~~l~ell~~--aDiV~l~~P~t~~  224 (331)
                      .++||||+|.||+. .++.++.. +++|+ +++++++.    . +...+.++++++.+  .|+|++|+|....
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H   78 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKERYPQASIVRSFKELTEDPEIDLIVVNTPDNTH   78 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGTTCTTSEEESCSHHHHTCTTCCEEEECSCGGGH
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHHhCCCCceECCHHHHhcCCCCCEEEEeCChHHH
Confidence            58999999999997 77777765 77875 67877654    1 33456899999987  8999999986543

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.71  E-value=0.0048  Score=57.48  Aligned_cols=109  Identities=17%  Similarity=0.248  Sum_probs=64.9

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCCC--------Cc-------cccCCHHhhhcCCCEEEEeccCCh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKPV--------PY-------AFYSNVCELAANSDALIICCALTD  223 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~--------~~-------~~~~~l~ell~~aDiV~l~~P~t~  223 (331)
                      ..+|+|||.|.+|..+|..+...|.  +|..+|...+..        ..       ....+-.+.+++||+|+++.+...
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~   86 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR   86 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            3589999999999999999988787  899999876430        00       011123567999999999987432


Q ss_pred             hhhhh------------c--cHHHHhcCCCCcEEEEcCCCCccCHHH--HHHH--HHhCCceEE--Eee
Q 020073          224 QTRRM------------I--NREVMLALGKEGIIVNVGRGAVIDENE--MVRC--LVRGEIAGA--GLD  272 (331)
Q Consensus       224 ~t~~l------------i--~~~~l~~mk~ga~lIn~srg~~vd~~a--l~~a--L~~~~i~ga--~lD  272 (331)
                       ..+.            +  -.+.+....|++++|+++  ..+|.-.  +.+.  +...++.|.  .||
T Consensus        87 -k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~~~~~~k~s~~p~~rviG~gt~Ld  152 (318)
T 1y6j_A           87 -KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS--NPVDIITYMIQKWSGLPVGKVIGSGTVLD  152 (318)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS--SSHHHHHHHHHHHHTCCTTTEEECTTHHH
T ss_pred             -CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CcHHHHHHHHHHHcCCCHHHEeccCCchH
Confidence             1111            1  011222336899999974  3444333  3332  233466665  256

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.68  E-value=0.0028  Score=59.43  Aligned_cols=88  Identities=22%  Similarity=0.329  Sum_probs=58.8

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC---------CC--c-----cccCCHHhhhcCCCEEEEeccCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP---------VP--Y-----AFYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~---------~~--~-----~~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      .++|+|||.|.||..+|..+...|.  +|..+|+..+.         ..  .     ....+..+.+++||+|+++.+..
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~p   84 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGAN   84 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEecccC
Confidence            5689999999999999999987776  89999986542         01  0     11122346899999999998532


Q ss_pred             --h-hhh-hhc--cH-------HHHhcCCCCcEEEEcCC
Q 020073          223 --D-QTR-RMI--NR-------EVMLALGKEGIIVNVGR  248 (331)
Q Consensus       223 --~-~t~-~li--~~-------~~l~~mk~ga~lIn~sr  248 (331)
                        + .++ .++  |.       +.+....|.+++++++-
T Consensus        85 ~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN  123 (326)
T 3pqe_A           85 QKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN  123 (326)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence              1 111 111  11       23333468899999973

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=96.67  E-value=0.0015  Score=64.47  Aligned_cols=109  Identities=14%  Similarity=0.187  Sum_probs=69.7

Q ss_pred             CceEEEEecChH--HHHHHHHHh---hC-CCEEEEECCCCCC----------------CC--ccccCCHHhhhcCCCEEE
Q 020073          161 GKRVGIVGLGNI--GLQVAKRLQ---AF-GCNVLYNSRSKKP----------------VP--YAFYSNVCELAANSDALI  216 (331)
Q Consensus       161 g~~vgIiG~G~I--G~~~A~~l~---~~-G~~V~~~~~~~~~----------------~~--~~~~~~l~ell~~aDiV~  216 (331)
                      ..+|+|||.|.+  |.++|..+.   ++ |.+|..+|+..+.                ..  .....++.+.+++||+|+
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI   82 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   82 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence            468999999997  466676664   34 7899999987642                01  112357888999999999


Q ss_pred             EeccCCh-----------hhhhh--------------------------c--cHHHHhcCCCCcEEEEcCCCCccCHHHH
Q 020073          217 ICCALTD-----------QTRRM--------------------------I--NREVMLALGKEGIIVNVGRGAVIDENEM  257 (331)
Q Consensus       217 l~~P~t~-----------~t~~l--------------------------i--~~~~l~~mk~ga~lIn~srg~~vd~~al  257 (331)
                      +++|...           .-.++                          +  =.+.+....|.|++||++-.-=+-..++
T Consensus        83 iaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~~~  162 (480)
T 1obb_A           83 NTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLV  162 (480)
T ss_dssp             ECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH
T ss_pred             ECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence            9997411           00111                          1  0123344568999999986654444555


Q ss_pred             HHHHHhCCceEEE
Q 020073          258 VRCLVRGEIAGAG  270 (331)
Q Consensus       258 ~~aL~~~~i~ga~  270 (331)
                      .+ +...++.|.+
T Consensus       163 ~k-~p~~rviG~c  174 (480)
T 1obb_A          163 TR-TVPIKAVGFC  174 (480)
T ss_dssp             HH-HSCSEEEEEC
T ss_pred             HH-CCCCcEEecC
Confidence            44 5555666553

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=96.66  E-value=0.0015  Score=63.57  Aligned_cols=101  Identities=20%  Similarity=0.165  Sum_probs=63.2

Q ss_pred             CceEEEEecChHHH-HHHHHHhhC-CCEEE-EECCCCCC-------CCcc-----ccCCHHhhhc--CCCEEEEeccCCh
Q 020073          161 GKRVGIVGLGNIGL-QVAKRLQAF-GCNVL-YNSRSKKP-------VPYA-----FYSNVCELAA--NSDALIICCALTD  223 (331)
Q Consensus       161 g~~vgIiG~G~IG~-~~A~~l~~~-G~~V~-~~~~~~~~-------~~~~-----~~~~l~ell~--~aDiV~l~~P~t~  223 (331)
                      -.+|||||+|.||+ .+++.+... +++++ +++++...       .+..     .+.++++++.  +.|+|++|+|...
T Consensus        83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~  162 (433)
T 1h6d_A           83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSL  162 (433)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGG
T ss_pred             ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchh
Confidence            35899999999997 899988765 56764 67876543       1221     3678999987  7999999998654


Q ss_pred             hhhhhccHHHHhcCCCCc-EEEEc-CCCCccCHHHHHHHHHhCCc
Q 020073          224 QTRRMINREVMLALGKEG-IIVNV-GRGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       224 ~t~~li~~~~l~~mk~ga-~lIn~-srg~~vd~~al~~aL~~~~i  266 (331)
                      .....+     ..++.|. +++.- ---.+-+.+.|.++.++..+
T Consensus       163 h~~~~~-----~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~  202 (433)
T 1h6d_A          163 HAEFAI-----RAFKAGKHVMCEKPMATSVADCQRMIDAAKAANK  202 (433)
T ss_dssp             HHHHHH-----HHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTC
T ss_pred             HHHHHH-----HHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCC
Confidence            332222     2244554 55542 11122333456666555443

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.63  E-value=0.007  Score=59.62  Aligned_cols=96  Identities=16%  Similarity=0.244  Sum_probs=70.4

Q ss_pred             cCCCceEEEEecC----------hHHHHHHHHHhhCCCEEEEECCCCCC-CCccccCCHHhhhcCCCEEEEeccCChhhh
Q 020073          158 KLGGKRVGIVGLG----------NIGLQVAKRLQAFGCNVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTR  226 (331)
Q Consensus       158 ~l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~~P~t~~t~  226 (331)
                      .+.|++|+|+|+-          +-...+++.|...|.+|.+||+.... .......+++++++.+|.|+++++.. +.+
T Consensus       350 ~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~-~f~  428 (478)
T 3g79_A          350 KMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVVRNADAIVVLAGHS-AYS  428 (478)
T ss_dssp             CSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHHHTTCSEEEECSCCH-HHH
T ss_pred             CCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHHHhcCCEEEEecCCH-HHH
Confidence            5789999999974          44789999999999999999997654 22233468999999999999998654 333


Q ss_pred             hhccHHHH-hcCC-CCcEEEEcCCCCccCHHHH
Q 020073          227 RMINREVM-LALG-KEGIIVNVGRGAVIDENEM  257 (331)
Q Consensus       227 ~li~~~~l-~~mk-~ga~lIn~srg~~vd~~al  257 (331)
                      . ++.+.+ +.|+ ++.+++|+ |+- +|.+.+
T Consensus       429 ~-~d~~~~~~~~~~~~~~i~D~-rn~-~~~~~~  458 (478)
T 3g79_A          429 S-LKADWAKKVSAKANPVIIDG-RNV-IEPDEF  458 (478)
T ss_dssp             S-CCHHHHHHHHCCSSCEEEES-SSC-SCHHHH
T ss_pred             h-hhHHHHHHHhccCCCEEEEC-CCC-CCHHHH
Confidence            3 344443 4577 47899995 664 455443

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=96.62  E-value=0.0015  Score=61.60  Aligned_cols=63  Identities=14%  Similarity=0.171  Sum_probs=48.7

Q ss_pred             ceEEEEecChHHHH-HHHHHhhC-CCEEE-EECCCCCC-----CCccccCCHHhhhc--CCCEEEEeccCChh
Q 020073          162 KRVGIVGLGNIGLQ-VAKRLQAF-GCNVL-YNSRSKKP-----VPYAFYSNVCELAA--NSDALIICCALTDQ  224 (331)
Q Consensus       162 ~~vgIiG~G~IG~~-~A~~l~~~-G~~V~-~~~~~~~~-----~~~~~~~~l~ell~--~aDiV~l~~P~t~~  224 (331)
                      .++||||+|.||+. .++.++.. +++|+ ++++++..     .+...+.++++++.  +.|+|++|+|....
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H   78 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVHELEEITNDPAIELVIVTTPSGLH   78 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHHHCTTSEEESSTHHHHTCTTCCEEEECSCTTTH
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEcCCcHHH
Confidence            58999999999997 78888765 77875 56776543     13445689999998  68999999997644

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.62  E-value=0.0046  Score=53.52  Aligned_cols=61  Identities=21%  Similarity=0.331  Sum_probs=47.4

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC------------CccccCCHHhhhcCCCEEEEeccCC
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV------------PYAFYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------------~~~~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      ++|.|.| .|.||+.+++.|...|.+|++.+|+....            +.....++.++++++|+|+.+....
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~   78 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNPG   78 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC-
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcCC
Confidence            6899999 69999999999999999999999875431            1111234677899999999887543

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=96.59  E-value=0.0014  Score=61.06  Aligned_cols=63  Identities=24%  Similarity=0.258  Sum_probs=48.0

Q ss_pred             ceEEEEecChHHHHHHHHHhhCC---CEEE-EECCCCCC-------CCc-cccCCHHhhhc--CCCEEEEeccCChh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFG---CNVL-YNSRSKKP-------VPY-AFYSNVCELAA--NSDALIICCALTDQ  224 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G---~~V~-~~~~~~~~-------~~~-~~~~~l~ell~--~aDiV~l~~P~t~~  224 (331)
                      .++||||+|.||+..++.++..+   ++++ +++++...       .+. ..+.++++++.  +.|+|++++|....
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H   79 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQH   79 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGH
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHH
Confidence            47999999999999999998654   4554 57876543       122 34679999997  69999999986543

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=96.59  E-value=0.0044  Score=57.42  Aligned_cols=62  Identities=18%  Similarity=0.224  Sum_probs=48.7

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhCCCEEE-EECCCCCC-------CCccccCCHHhhh----------cCCCEEEEeccCC
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAFGCNVL-YNSRSKKP-------VPYAFYSNVCELA----------ANSDALIICCALT  222 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~~~~~~~-------~~~~~~~~l~ell----------~~aDiV~l~~P~t  222 (331)
                      .++||||+ |.||+..++.++..+.+++ ++|+++..       .....+.++++++          .+.|+|++|+|..
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~   83 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNH   83 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGG
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCch
Confidence            58999999 7899999999998888765 67777654       1233467888887          6799999999865


Q ss_pred             h
Q 020073          223 D  223 (331)
Q Consensus       223 ~  223 (331)
                      .
T Consensus        84 ~   84 (312)
T 3o9z_A           84 L   84 (312)
T ss_dssp             G
T ss_pred             h
Confidence            3

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=96.59  E-value=0.031  Score=51.84  Aligned_cols=97  Identities=15%  Similarity=0.183  Sum_probs=71.2

Q ss_pred             cCC-CceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC-C----------------CccccCCHHhhhcCCCEEEEe
Q 020073          158 KLG-GKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP-V----------------PYAFYSNVCELAANSDALIIC  218 (331)
Q Consensus       158 ~l~-g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~----------------~~~~~~~l~ell~~aDiV~l~  218 (331)
                      .+. |.+|++|| .+++.++.+..+..+|++|.+..+..-. .                ......+++++++++|+|..-
T Consensus       142 ~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~  221 (307)
T 3tpf_A          142 MQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITD  221 (307)
T ss_dssp             CGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEec
Confidence            377 99999999 6789999999999999999988775322 1                112346899999999999876


Q ss_pred             c--cCCh--h--------hhhhccHHHHhcCCCCcEEEEcC---CCCccCH
Q 020073          219 C--ALTD--Q--------TRRMINREVMLALGKEGIIVNVG---RGAVIDE  254 (331)
Q Consensus       219 ~--P~t~--~--------t~~li~~~~l~~mk~ga~lIn~s---rg~~vd~  254 (331)
                      .  .-..  +        ...-++.+.++.+|++++|.-+.   ||.=|+.
T Consensus       222 ~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~lPa~Rg~EI~~  272 (307)
T 3tpf_A          222 TWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSE  272 (307)
T ss_dssp             CSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCH
T ss_pred             CcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCCCCCceeCH
Confidence            5  0111  0        12446899999999999998875   5554444

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.58  E-value=0.0084  Score=52.38  Aligned_cols=64  Identities=22%  Similarity=0.260  Sum_probs=50.0

Q ss_pred             CCCceEEEEe-cChHHHHHHHHHhhCCC--EEEEECCCCCCC-------------CccccCCHHhhhcCCCEEEEeccCC
Q 020073          159 LGGKRVGIVG-LGNIGLQVAKRLQAFGC--NVLYNSRSKKPV-------------PYAFYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       159 l~g~~vgIiG-~G~IG~~~A~~l~~~G~--~V~~~~~~~~~~-------------~~~~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      +.++++.|.| .|.||+.+++.|...|.  +|++.+|+....             +.....+++++++..|+|+.+....
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            4578999999 69999999999999999  999998876541             1111245677888999999988654

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.57  E-value=0.0035  Score=59.10  Aligned_cols=62  Identities=15%  Similarity=0.146  Sum_probs=45.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhC--------CCEEE-EECCCCCC-------CCc-cccCCHHhhhc--CCCEEEEeccCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF--------GCNVL-YNSRSKKP-------VPY-AFYSNVCELAA--NSDALIICCALT  222 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~--------G~~V~-~~~~~~~~-------~~~-~~~~~l~ell~--~aDiV~l~~P~t  222 (331)
                      -+|||||+|.||+.-++.++..        +++|+ ++|++++.       .+. ..+.+++++++  +.|+|++|+|..
T Consensus        26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP~~  105 (393)
T 4fb5_A           26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTPNQ  105 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSCGG
T ss_pred             ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCChH
Confidence            4899999999999888776542        56765 57887765       122 34679999986  479999999865


Q ss_pred             h
Q 020073          223 D  223 (331)
Q Consensus       223 ~  223 (331)
                      -
T Consensus       106 ~  106 (393)
T 4fb5_A          106 F  106 (393)
T ss_dssp             G
T ss_pred             H
Confidence            4

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=96.57  E-value=0.0015  Score=57.48  Aligned_cols=60  Identities=10%  Similarity=0.135  Sum_probs=44.4

Q ss_pred             ceEEEEecChHHHHHHHH--HhhCCCEEE-EECCCCCC-----CC--ccccCCHHhhhc-CCCEEEEeccCC
Q 020073          162 KRVGIVGLGNIGLQVAKR--LQAFGCNVL-YNSRSKKP-----VP--YAFYSNVCELAA-NSDALIICCALT  222 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~--l~~~G~~V~-~~~~~~~~-----~~--~~~~~~l~ell~-~aDiV~l~~P~t  222 (331)
                      .+++|||+|.+|+.+++.  ... |++++ ++|..+..     .+  .....+++++++ +.|+|++|+|..
T Consensus        81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps~  151 (211)
T 2dt5_A           81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPRE  151 (211)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHH
T ss_pred             CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCch
Confidence            679999999999999995  334 88865 56666554     11  223567888886 599999999854

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.57  E-value=0.0055  Score=59.88  Aligned_cols=97  Identities=26%  Similarity=0.367  Sum_probs=71.3

Q ss_pred             CccCCCceEEEEecC----------hHHHHHHHHHhhCCCEEEEECCCCCC-----C-CccccCCHHhhhcCCCEEEEec
Q 020073          156 GSKLGGKRVGIVGLG----------NIGLQVAKRLQAFGCNVLYNSRSKKP-----V-PYAFYSNVCELAANSDALIICC  219 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~~~~~~~-----~-~~~~~~~l~ell~~aDiV~l~~  219 (331)
                      +..+.|++|+|+|+.          +-...+++.|...|++|.+||+....     . +.....+++++++.+|.|++++
T Consensus       317 ~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t  396 (446)
T 4a7p_A          317 GGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVT  396 (446)
T ss_dssp             TSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECS
T ss_pred             cccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEee
Confidence            446899999999997          77899999999999999999987632     1 2334568899999999999998


Q ss_pred             cCChhhhhhccHHHHh-cCCCCcEEEEcCCCCccCHHHH
Q 020073          220 ALTDQTRRMINREVML-ALGKEGIIVNVGRGAVIDENEM  257 (331)
Q Consensus       220 P~t~~t~~li~~~~l~-~mk~ga~lIn~srg~~vd~~al  257 (331)
                      +.. +.+. ++-+.+. .|+ +.+++|+ |+- .|.+.+
T Consensus       397 ~~~-~f~~-~d~~~~~~~~~-~~~i~D~-r~~-~~~~~~  430 (446)
T 4a7p_A          397 EWD-AFRA-LDLTRIKNSLK-SPVLVDL-RNI-YPPAEL  430 (446)
T ss_dssp             CCT-TTTS-CCHHHHHTTBS-SCBEECS-SCC-SCHHHH
T ss_pred             CCH-Hhhc-CCHHHHHHhcC-CCEEEEC-CCC-CCHHHH
Confidence            755 2232 4555444 465 4678885 654 565544

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.57  E-value=0.0028  Score=57.15  Aligned_cols=61  Identities=28%  Similarity=0.441  Sum_probs=46.8

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--C-------CccccCCHHhhhcC-CCEEEEecc
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--V-------PYAFYSNVCELAAN-SDALIICCA  220 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--~-------~~~~~~~l~ell~~-aDiV~l~~P  220 (331)
                      .+++|.|.|.|.||+.+++.|...|.+|++.+|+...  .       +.....+++++++. +|+|+.+..
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            3578999999999999999999999999999987653  1       11112345667776 999987764

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=96.55  E-value=0.0027  Score=62.51  Aligned_cols=109  Identities=13%  Similarity=0.050  Sum_probs=68.4

Q ss_pred             CceEEEEecChH-HHHHHHHHhhC-----CCEEEEECCCCCC----------------CC--ccccCCHHhhhcCCCEEE
Q 020073          161 GKRVGIVGLGNI-GLQVAKRLQAF-----GCNVLYNSRSKKP----------------VP--YAFYSNVCELAANSDALI  216 (331)
Q Consensus       161 g~~vgIiG~G~I-G~~~A~~l~~~-----G~~V~~~~~~~~~----------------~~--~~~~~~l~ell~~aDiV~  216 (331)
                      ..+|+|||.|.. |.++|..|...     +.+|..||+..+.                ..  .....++.+++++||+|+
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VV  107 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM  107 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEE
Confidence            469999999998 66677666544     5689999987642                01  112357889999999999


Q ss_pred             EeccCChh---hh----------------------------hhc--cHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHh
Q 020073          217 ICCALTDQ---TR----------------------------RMI--NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVR  263 (331)
Q Consensus       217 l~~P~t~~---t~----------------------------~li--~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~  263 (331)
                      +++|....   ++                            .++  =.+.+....|.|++||++-.-=+-..++.+....
T Consensus       108 iaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~p~  187 (472)
T 1u8x_X          108 AHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPN  187 (472)
T ss_dssp             ECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHSTT
T ss_pred             EcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhCCC
Confidence            99986321   11                            111  0123334468999999986543333444443333


Q ss_pred             CCceEE
Q 020073          264 GEIAGA  269 (331)
Q Consensus       264 ~~i~ga  269 (331)
                      .++.|.
T Consensus       188 ~rViG~  193 (472)
T 1u8x_X          188 SKILNI  193 (472)
T ss_dssp             CCEEEC
T ss_pred             CCEEEe
Confidence            355554

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.54  E-value=0.0044  Score=58.01  Aligned_cols=86  Identities=22%  Similarity=0.329  Sum_probs=61.6

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc-ccCCHHhhhcCCCEEEEeccCChhhhhhccHH
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA-FYSNVCELAANSDALIICCALTDQTRRMINRE  232 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~-~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~  232 (331)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++++      .+.. ...+.+++.+..|+|+-++.....     -..
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~-----~~~  250 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYD-----LKD  250 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCC-----HHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHH-----HHH
Confidence            4789999999999999999999999999999887765      1211 112333444468888887764322     234


Q ss_pred             HHhcCCCCcEEEEcCCCC
Q 020073          233 VMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       233 ~l~~mk~ga~lIn~srg~  250 (331)
                      .++.++++..++.++...
T Consensus       251 ~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          251 YLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             HHTTEEEEEEEEECCCCC
T ss_pred             HHHHHhcCCEEEEECCCC
Confidence            567788888888886543

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=96.53  E-value=0.054  Score=50.36  Aligned_cols=90  Identities=10%  Similarity=0.154  Sum_probs=68.7

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC-C--------------C--ccccCCHHhhhcCCCEEEEec
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP-V--------------P--YAFYSNVCELAANSDALIICC  219 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~-~--------------~--~~~~~~l~ell~~aDiV~l~~  219 (331)
                      .+.|.+|++||= +++.++++..+..+|++|.+..+..-. .              +  .....+++++++++|+|..-.
T Consensus       152 ~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~  231 (315)
T 1pvv_A          152 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV  231 (315)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcc
Confidence            378999999995 999999999999999999988775422 1              1  223578999999999999844


Q ss_pred             cC-------Chh-----hhhhccHHHHhcCCCCcEEEEcC
Q 020073          220 AL-------TDQ-----TRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       220 P~-------t~~-----t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      =.       .++     ...-++.+.++++|++++|.-+.
T Consensus       232 w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~l  271 (315)
T 1pvv_A          232 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  271 (315)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             eeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCC
Confidence            20       111     12456899999999999998874

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.53  E-value=0.0051  Score=53.15  Aligned_cols=60  Identities=20%  Similarity=0.285  Sum_probs=47.4

Q ss_pred             eEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC-----------Cccc-cCCHHhhhcCCCEEEEeccCC
Q 020073          163 RVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV-----------PYAF-YSNVCELAANSDALIICCALT  222 (331)
Q Consensus       163 ~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----------~~~~-~~~l~ell~~aDiV~l~~P~t  222 (331)
                      +|.|.| .|.||+.+++.|...|++|++.+|+..+.           +... ..++.+++++.|+|+.+....
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~   74 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSG   74 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCT
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCC
Confidence            689999 89999999999999999999999876431           1111 235677889999999988654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.53  E-value=0.0026  Score=55.76  Aligned_cols=66  Identities=18%  Similarity=0.208  Sum_probs=50.1

Q ss_pred             ccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC------CCc-cc-----cCCHHhhhcCCCEEEEeccCC
Q 020073          157 SKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP------VPY-AF-----YSNVCELAANSDALIICCALT  222 (331)
Q Consensus       157 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~-~~-----~~~l~ell~~aDiV~l~~P~t  222 (331)
                      ..+.|++|.|.|. |.||+.+++.|...|++|++.+|+...      .+. ..     ..++.+++...|+|+.+....
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~   95 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG   95 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence            4689999999996 999999999999999999999987653      111 11     146678889999999888644

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.51  E-value=0.0035  Score=56.40  Aligned_cols=79  Identities=23%  Similarity=0.325  Sum_probs=57.2

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------C-----------------Cc--ccc
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------V-----------------PY--AFY  202 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~-----------------~~--~~~  202 (331)
                      ..|++++|.|||+|.+|..+|+.|...|. ++.++|...-.              .                 ..  ...
T Consensus        24 ~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  103 (251)
T 1zud_1           24 QKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL  103 (251)
T ss_dssp             HHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence            35889999999999999999999999998 77787653210              0                 00  000


Q ss_pred             ------CCHHhhhcCCCEEEEeccCChhhhhhccHHHHhc
Q 020073          203 ------SNVCELAANSDALIICCALTDQTRRMINREVMLA  236 (331)
Q Consensus       203 ------~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~  236 (331)
                            .+++++++++|+|+.++. +.+++.++++.....
T Consensus       104 ~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~  142 (251)
T 1zud_1          104 QQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVAL  142 (251)
T ss_dssp             CSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHHT
T ss_pred             eccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHh
Confidence                  135567888999999886 567788887766553

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=96.50  E-value=0.048  Score=50.91  Aligned_cols=90  Identities=20%  Similarity=0.190  Sum_probs=67.9

Q ss_pred             cCCCceEEEEecC--hHHHHHHHHHhhCCCEEEEECCCCCC-C--------------C--ccccCCHHhhhcCCCEEEEe
Q 020073          158 KLGGKRVGIVGLG--NIGLQVAKRLQAFGCNVLYNSRSKKP-V--------------P--YAFYSNVCELAANSDALIIC  218 (331)
Q Consensus       158 ~l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~-~--------------~--~~~~~~l~ell~~aDiV~l~  218 (331)
                      .+.|.+|++||=|  ++.++++..+..+|++|.+..+..-. .              +  .....+++++++++|+|..-
T Consensus       164 ~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~  243 (325)
T 1vlv_A          164 RLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTD  243 (325)
T ss_dssp             CSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEec
Confidence            3789999999975  99999999999999999988774321 1              1  22357899999999999884


Q ss_pred             ccC-------Chh-----hhhhccHHHHhcC-CCCcEEEEcC
Q 020073          219 CAL-------TDQ-----TRRMINREVMLAL-GKEGIIVNVG  247 (331)
Q Consensus       219 ~P~-------t~~-----t~~li~~~~l~~m-k~ga~lIn~s  247 (331)
                      .=.       .++     ...-++++.++++ |++++|.-+.
T Consensus       244 ~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~L  285 (325)
T 1vlv_A          244 VWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL  285 (325)
T ss_dssp             CCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             cccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCC
Confidence            321       010     2345689999999 9999998874

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=96.50  E-value=0.017  Score=54.19  Aligned_cols=90  Identities=10%  Similarity=0.040  Sum_probs=68.4

Q ss_pred             cCCCceEEEEecC--hHHHHHHHHHhhCCCEEEEECCCCCC-C--------------C--ccccCCHHhhhcCCCEEEEe
Q 020073          158 KLGGKRVGIVGLG--NIGLQVAKRLQAFGCNVLYNSRSKKP-V--------------P--YAFYSNVCELAANSDALIIC  218 (331)
Q Consensus       158 ~l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~-~--------------~--~~~~~~l~ell~~aDiV~l~  218 (331)
                      .+.|.+|++||=|  +++.+++..+..+|++|.+..+..-. .              +  .....+++++++++|+|..-
T Consensus       152 ~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (333)
T 1duv_G          152 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD  231 (333)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeC
Confidence            4789999999975  99999999999999999988764321 0              1  22357899999999999884


Q ss_pred             ccC-----C---hh-----hhhhccHHHHhcC-CCCcEEEEcC
Q 020073          219 CAL-----T---DQ-----TRRMINREVMLAL-GKEGIIVNVG  247 (331)
Q Consensus       219 ~P~-----t---~~-----t~~li~~~~l~~m-k~ga~lIn~s  247 (331)
                      .=.     .   .+     ...-++.+.++++ |++++|.-+.
T Consensus       232 ~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcL  274 (333)
T 1duv_G          232 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  274 (333)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             CccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCC
Confidence            320     0   11     1245799999999 9999998874

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=96.49  E-value=0.0051  Score=57.15  Aligned_cols=63  Identities=14%  Similarity=0.212  Sum_probs=48.7

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhCCCEEE-EECCCCCC-------CCccccCCHHhhh-----------cCCCEEEEeccC
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAFGCNVL-YNSRSKKP-------VPYAFYSNVCELA-----------ANSDALIICCAL  221 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~~~~~~~-------~~~~~~~~l~ell-----------~~aDiV~l~~P~  221 (331)
                      .++||||+ |.||+..++.++..|.+++ ++|+++..       .....+.++++++           .+.|+|++++|.
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~   83 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPN   83 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCG
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCc
Confidence            58999999 7899999999998898765 57776554       1233467888876           568999999986


Q ss_pred             Chh
Q 020073          222 TDQ  224 (331)
Q Consensus       222 t~~  224 (331)
                      ...
T Consensus        84 ~~H   86 (318)
T 3oa2_A           84 YLH   86 (318)
T ss_dssp             GGH
T ss_pred             HHH
Confidence            533

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.46  E-value=0.0057  Score=56.94  Aligned_cols=88  Identities=18%  Similarity=0.310  Sum_probs=58.6

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC-----------CC-----ccccCCHHhhhcCCCEEEEeccC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP-----------VP-----YAFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~-----------~~-----~~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      ...+|+|||.|.+|..+|..+...|.  +|..+|...+.           ..     .....+..+.+++||+|+++.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~   84 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGA   84 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCC
Confidence            34689999999999999999886664  89999976532           00     01112446789999999999864


Q ss_pred             Chh---hh--------hhcc--HHHHhcCCCCcEEEEcC
Q 020073          222 TDQ---TR--------RMIN--REVMLALGKEGIIVNVG  247 (331)
Q Consensus       222 t~~---t~--------~li~--~~~l~~mk~ga~lIn~s  247 (331)
                      ...   ++        .++.  .+.+....|++++|+++
T Consensus        85 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t  123 (317)
T 3d0o_A           85 AQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT  123 (317)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            321   11        1110  12233347899999976

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=96.42  E-value=0.0073  Score=55.39  Aligned_cols=99  Identities=16%  Similarity=0.153  Sum_probs=63.0

Q ss_pred             ceEEEEecChHHHHHHHHHhh----CCCEEE-EECCCCCC--CCccccCCHHhhhc--CCCEEEEeccCChhhhhhccHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQA----FGCNVL-YNSRSKKP--VPYAFYSNVCELAA--NSDALIICCALTDQTRRMINRE  232 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~----~G~~V~-~~~~~~~~--~~~~~~~~l~ell~--~aDiV~l~~P~t~~t~~li~~~  232 (331)
                      .+|||||+|.||+..++.+..    -+++++ +++++...  .+.. +.+++++++  +.|+|++++|.......  -..
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~~~--~~~   84 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVR-QISLEDALRSQEIDVAYICSESSSHEDY--IRQ   84 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHHH--HHH
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHHHHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHHHH--HHH
Confidence            589999999999999988864    356765 56665332  2222 478999987  68999999986533222  222


Q ss_pred             HHhcCCCCc-EEEEcC-CCCccCHHHHHHHHHhCCc
Q 020073          233 VMLALGKEG-IIVNVG-RGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       233 ~l~~mk~ga-~lIn~s-rg~~vd~~al~~aL~~~~i  266 (331)
                      .   ++.|. +++.-- --.+-+.++|+++.++..+
T Consensus        85 a---l~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~  117 (294)
T 1lc0_A           85 F---LQAGKHVLVEYPMTLSFAAAQELWELAAQKGR  117 (294)
T ss_dssp             H---HHTTCEEEEESCSCSCHHHHHHHHHHHHHTTC
T ss_pred             H---HHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence            3   44454 666631 1123344667777766554

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.41  E-value=0.0056  Score=57.04  Aligned_cols=89  Identities=20%  Similarity=0.288  Sum_probs=59.1

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCC--CC-------C--C-------cc-ccCCHHhhhcCCCEEEEec
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSK--KP-------V--P-------YA-FYSNVCELAANSDALIICC  219 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~--~~-------~--~-------~~-~~~~l~ell~~aDiV~l~~  219 (331)
                      ..++|+|||.|.||..+|..+...|. +|..+|+.+  ..       .  .       .. ...+-.+.+++||+|+++.
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaa   86 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITA   86 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeC
Confidence            46789999999999999999998898 999999983  21       0  0       00 1112246899999999997


Q ss_pred             cC--Ch-hhh-hhc--c----H---HHHhcCCCCcEEEEcCC
Q 020073          220 AL--TD-QTR-RMI--N----R---EVMLALGKEGIIVNVGR  248 (331)
Q Consensus       220 P~--t~-~t~-~li--~----~---~~l~~mk~ga~lIn~sr  248 (331)
                      ..  .+ .|+ .++  |    +   +.+....|.+++++++-
T Consensus        87 g~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN  128 (315)
T 3tl2_A           87 GIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN  128 (315)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence            32  22 111 111  1    1   12233368899999983

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=96.40  E-value=0.049  Score=50.75  Aligned_cols=90  Identities=12%  Similarity=0.103  Sum_probs=66.2

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC-----C----------C--ccccCCHHhhhcCCCEEEEec
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP-----V----------P--YAFYSNVCELAANSDALIICC  219 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~----------~--~~~~~~l~ell~~aDiV~l~~  219 (331)
                      .+.|.+|++||= .++.++.+..+..+|++|.+..+..-.     .          +  .....+++++++++|+|..-+
T Consensus       152 ~l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~  231 (321)
T 1oth_A          152 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT  231 (321)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CcCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhccCCEEEEec
Confidence            378999999996 558888888888999999988775432     0          1  223578999999999999843


Q ss_pred             ----cCChh--------hhhhccHHHHhcCCCCcEEEEcC
Q 020073          220 ----ALTDQ--------TRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       220 ----P~t~~--------t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                          ....+        ...-++.+.++++|++++|.-+.
T Consensus       232 w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~l  271 (321)
T 1oth_A          232 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  271 (321)
T ss_dssp             SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             cccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCC
Confidence                11111        11346899999999999988774

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.40  E-value=0.0053  Score=57.22  Aligned_cols=86  Identities=17%  Similarity=0.268  Sum_probs=57.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC---------CC------ccccCCHHhhhcCCCEEEEeccCChh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP---------VP------YAFYSNVCELAANSDALIICCALTDQ  224 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~---------~~------~~~~~~l~ell~~aDiV~l~~P~t~~  224 (331)
                      .+|+|||.|.+|..++..+...+.  +|..+|...+.         ..      .....+..+.+++||+|+++.+....
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~~   85 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQK   85 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC---
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            689999999999999999986665  89999986432         00      00112456789999999999864321


Q ss_pred             -----------hhhhcc--HHHHhcCCCCcEEEEcC
Q 020073          225 -----------TRRMIN--REVMLALGKEGIIVNVG  247 (331)
Q Consensus       225 -----------t~~li~--~~~l~~mk~ga~lIn~s  247 (331)
                                 +..++.  .+.+....|.+++|+++
T Consensus        86 ~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  121 (318)
T 1ez4_A           86 PGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA  121 (318)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence                       111220  12233347899999984

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.38  E-value=0.0073  Score=51.75  Aligned_cols=88  Identities=15%  Similarity=0.229  Sum_probs=57.7

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC-----CCcc------ccCCHHhhhcCCCEEEEeccCChhhhh--
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYA------FYSNVCELAANSDALIICCALTDQTRR--  227 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~------~~~~l~ell~~aDiV~l~~P~t~~t~~--  227 (331)
                      ++|.|.| .|.||+.+++.|...|.+|++.+|+...     ....      ...+. +.+..+|+|+.+.........  
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~~~~~~~~   79 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTL-SDLSDQNVVVDAYGISPDEAEKH   79 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCH-HHHTTCSEEEECCCSSTTTTTSH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhh-hhhcCCCEEEECCcCCccccchH
Confidence            3689999 5999999999999999999999987543     0111      01112 678899999998865432111  


Q ss_pred             -hccHHHHhcCCC--CcEEEEcCCCC
Q 020073          228 -MINREVMLALGK--EGIIVNVGRGA  250 (331)
Q Consensus       228 -li~~~~l~~mk~--ga~lIn~srg~  250 (331)
                       ......++.|+.  ...+|.+|...
T Consensus        80 ~~~~~~l~~a~~~~~~~~~v~~SS~~  105 (221)
T 3ew7_A           80 VTSLDHLISVLNGTVSPRLLVVGGAA  105 (221)
T ss_dssp             HHHHHHHHHHHCSCCSSEEEEECCCC
T ss_pred             HHHHHHHHHHHHhcCCceEEEEecce
Confidence             112344455543  35677777643

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=96.37  E-value=0.0052  Score=60.52  Aligned_cols=63  Identities=16%  Similarity=0.289  Sum_probs=49.0

Q ss_pred             CceEEEEec----ChHHHHHHHHHhhC--CCEEE-EECCCCCC-------CCc---cccCCHHhhhc--CCCEEEEeccC
Q 020073          161 GKRVGIVGL----GNIGLQVAKRLQAF--GCNVL-YNSRSKKP-------VPY---AFYSNVCELAA--NSDALIICCAL  221 (331)
Q Consensus       161 g~~vgIiG~----G~IG~~~A~~l~~~--G~~V~-~~~~~~~~-------~~~---~~~~~l~ell~--~aDiV~l~~P~  221 (331)
                      -.+|||||+    |.||+..++.++..  +++|+ ++|++...       .+.   ..+.+++++++  +.|+|++|+|.
T Consensus        39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~  118 (479)
T 2nvw_A           39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKV  118 (479)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCH
T ss_pred             cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCc
Confidence            358999999    99999999999876  67765 67876543       122   25679999996  68999999985


Q ss_pred             Ch
Q 020073          222 TD  223 (331)
Q Consensus       222 t~  223 (331)
                      ..
T Consensus       119 ~~  120 (479)
T 2nvw_A          119 PE  120 (479)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=96.37  E-value=0.012  Score=56.36  Aligned_cols=96  Identities=15%  Similarity=0.127  Sum_probs=68.2

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh---cCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML---ALG  238 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~---~mk  238 (331)
                      .++.|+|.|.+|+++++.++.+|++|+++|..+..      .+ .+-+..+|-++...|.     ..+..  +.   ++.
T Consensus       205 ~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~------~~-~~~fp~a~~~~~~~p~-----~~~~~--~~~~~~~~  270 (386)
T 2we8_A          205 PRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVF------AT-TARFPTADEVVVDWPH-----RYLAA--QAEAGAID  270 (386)
T ss_dssp             CEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTT------SC-TTTCSSSSEEEESCHH-----HHHHH--HHHHTCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhh------cc-cccCCCceEEEeCChH-----HHHHh--hccccCCC
Confidence            58999999999999999999999999999876532      11 1234566655554441     11111  11   267


Q ss_pred             CCcEEEEcCCCCccCHHHHHHHHHhCCceEEEe
Q 020073          239 KEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGL  271 (331)
Q Consensus       239 ~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~l  271 (331)
                      +++.+|=+.++.-.|...|..+|+++...+.++
T Consensus       271 ~~t~vvvlTh~~~~D~~~L~~aL~~~~~~YIG~  303 (386)
T 2we8_A          271 ARTVVCVLTHDPKFDVPLLEVALRLPDIAYIGA  303 (386)
T ss_dssp             TTCEEEECCCCHHHHHHHHHHHTTSSCCSEEEE
T ss_pred             CCcEEEEEECChHhHHHHHHHHhcCCCCCEEEE
Confidence            788888889999999999999999874444443

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.34  E-value=0.014  Score=53.67  Aligned_cols=104  Identities=10%  Similarity=0.103  Sum_probs=74.1

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC---CCccccCCHHhhhcCCCEEEEeccCCh----------hh
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP---VPYAFYSNVCELAANSDALIICCALTD----------QT  225 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---~~~~~~~~l~ell~~aDiV~l~~P~t~----------~t  225 (331)
                      +.|++|.++|........++.|...|++|.+.......   .+.....++.+.++++|+|+...|...          .+
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~~   84 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSNE   84 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCSS
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCcccccccccC
Confidence            67889999999999999999999999999876432221   222234457788899999987444321          23


Q ss_pred             hhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          226 RRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       226 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      ...++++.++.++++.+++ +   + +|..++.+++.+..|.
T Consensus        85 ~~~~~~~~l~~~~~l~~i~-~---g-~~~~d~~~~~~~~gi~  121 (300)
T 2rir_A           85 EVVLKQDHLDRTPAHCVIF-S---G-ISNAYLENIAAQAKRK  121 (300)
T ss_dssp             CEECCHHHHHTSCTTCEEE-E---S-SCCHHHHHHHHHTTCC
T ss_pred             CccchHHHHhhcCCCCEEE-E---e-cCCHHHHHHHHHCCCE
Confidence            3347899999999988877 3   3 3666766666666665

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=96.32  E-value=0.0054  Score=56.91  Aligned_cols=85  Identities=20%  Similarity=0.286  Sum_probs=55.9

Q ss_pred             eEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC---------C-------C--ccccCCHHhhhcCCCEEEEeccCCh
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP---------V-------P--YAFYSNVCELAANSDALIICCALTD  223 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~---------~-------~--~~~~~~l~ell~~aDiV~l~~P~t~  223 (331)
                      +|+|||.|.+|..+|..+...|+ +|..+|...+.         .       .  .....+. +.+++||+|+++.+...
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~   79 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR   79 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence            58999999999999999876676 69999987653         0       1  0111354 68999999999975432


Q ss_pred             h-----------hhhhcc--HHHHhcCCCCcEEEEcCC
Q 020073          224 Q-----------TRRMIN--REVMLALGKEGIIVNVGR  248 (331)
Q Consensus       224 ~-----------t~~li~--~~~l~~mk~ga~lIn~sr  248 (331)
                      .           +..++.  .+.+....|.+++|+++-
T Consensus        80 k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (308)
T 2d4a_B           80 KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN  117 (308)
T ss_dssp             CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            1           111110  112223358899999853

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.32  E-value=0.0038  Score=58.39  Aligned_cols=62  Identities=26%  Similarity=0.329  Sum_probs=46.2

Q ss_pred             ceEEEEecChHHHH-HHHHHhhC-CCEEE-EECCCCCC-------CCc-cccCCHHhhhcC--CCEEEEeccCCh
Q 020073          162 KRVGIVGLGNIGLQ-VAKRLQAF-GCNVL-YNSRSKKP-------VPY-AFYSNVCELAAN--SDALIICCALTD  223 (331)
Q Consensus       162 ~~vgIiG~G~IG~~-~A~~l~~~-G~~V~-~~~~~~~~-------~~~-~~~~~l~ell~~--aDiV~l~~P~t~  223 (331)
                      .++||||+|.||+. .+..++.. +++|+ ++|++++.       .+. ..+.++++++++  .|+|++|+|...
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~   98 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQ   98 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGG
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCch
Confidence            48999999999986 56777654 67876 57877543       122 346799999854  799999998653

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=96.27  E-value=0.013  Score=55.51  Aligned_cols=90  Identities=12%  Similarity=0.201  Sum_probs=57.7

Q ss_pred             CceEEEEe-cChHHHHHHHHHhhCC------CEEEEEC-CC-CCC-CC-----cc-----ccCCH-HhhhcCCCEEEEec
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQAFG------CNVLYNS-RS-KKP-VP-----YA-----FYSNV-CELAANSDALIICC  219 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~~~G------~~V~~~~-~~-~~~-~~-----~~-----~~~~l-~ell~~aDiV~l~~  219 (331)
                      ..+|+|+| .|.+|+.+.+.|...+      .+|.... ++ ..+ ..     ..     ...++ .+.+..+|+|++|+
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~al   88 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAVLGGHDAVFLAL   88 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHHHHTTCSEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCHHHhcCCCEEEECC
Confidence            36899999 9999999999998766      4666553 22 211 10     00     11111 23456899999999


Q ss_pred             cCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHH
Q 020073          220 ALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENE  256 (331)
Q Consensus       220 P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~a  256 (331)
                      |...      .++....++.|..+|+.|..--.+..+
T Consensus        89 g~~~------s~~~~~~~~~G~~vIDlSa~~R~~~~~  119 (352)
T 2nqt_A           89 PHGH------SAVLAQQLSPETLIIDCGADFRLTDAA  119 (352)
T ss_dssp             TTSC------CHHHHHHSCTTSEEEECSSTTTCSCHH
T ss_pred             CCcc------hHHHHHHHhCCCEEEEECCCccCCcch
Confidence            8653      334444456789999998665554434

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.26  E-value=0.034  Score=54.02  Aligned_cols=104  Identities=18%  Similarity=0.290  Sum_probs=70.6

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCCEEE-EECCCC-----C--C----------C----Cc--cccCCHHhhh-c
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YNSRSK-----K--P----------V----PY--AFYSNVCELA-A  210 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~~~~~-----~--~----------~----~~--~~~~~l~ell-~  210 (331)
                      |.++.|++|.|.|+|++|+.+|+.|...|.+|+ +.|.+.     +  .          .    ++  ....+.++++ .
T Consensus       230 g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~~  309 (440)
T 3aog_A          230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGL  309 (440)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTTC
T ss_pred             CCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhcC
Confidence            446899999999999999999999999999998 444421     0  0          0    00  0112345554 4


Q ss_pred             CCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       211 ~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      .||+++-|..     .+.|+.+...+++ ..+++..+-+.+- .+| .+.|.+..|.
T Consensus       310 ~~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~t-~eA-~~iL~~~GI~  358 (440)
T 3aog_A          310 PVEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPTT-PAA-DDILLEKGVL  358 (440)
T ss_dssp             CCSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCBC-HHH-HHHHHHHTCE
T ss_pred             CCcEEEecCC-----cCccchhhHHHcC-CcEEEecCccccC-HHH-HHHHHHCCCE
Confidence            6999998854     4466666667774 5688888888865 333 3556666654

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.25  E-value=0.0066  Score=55.38  Aligned_cols=37  Identities=24%  Similarity=0.430  Sum_probs=33.8

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      ++.|+++.|+| .|.||+++++.|...|++|++++|+.
T Consensus       116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~  153 (287)
T 1lu9_A          116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL  153 (287)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence            36789999999 99999999999999999999998864

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.23  E-value=0.015  Score=55.19  Aligned_cols=83  Identities=19%  Similarity=0.289  Sum_probs=54.1

Q ss_pred             CCceEEEEe-cChHHHHHHHHHhhCC-CEEEEECCCCCC-C------C-cc-------ccCCHHhhhcCCCEEEEeccCC
Q 020073          160 GGKRVGIVG-LGNIGLQVAKRLQAFG-CNVLYNSRSKKP-V------P-YA-------FYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       160 ~g~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~~~~~~~-~------~-~~-------~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      ...+|+|+| +|.||+.+++.|.... +++.+....... .      + ..       ...+ ++.+.++|+|+.|+|..
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~   93 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHG   93 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTT
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCch
Confidence            346899999 9999999999998754 477766443221 0      0 00       0112 45567899999999855


Q ss_pred             hhhhhhccHHHHhcCCCCcEEEEcCCC
Q 020073          223 DQTRRMINREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       223 ~~t~~li~~~~l~~mk~ga~lIn~srg  249 (331)
                      ..      .+.....+.|+.+|+.|.-
T Consensus        94 ~s------~~~a~~~~aG~~VId~sa~  114 (359)
T 1xyg_A           94 TT------QEIIKELPTALKIVDLSAD  114 (359)
T ss_dssp             TH------HHHHHTSCTTCEEEECSST
T ss_pred             hH------HHHHHHHhCCCEEEECCcc
Confidence            32      2222223778999998753

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.22  E-value=0.0053  Score=59.31  Aligned_cols=60  Identities=23%  Similarity=0.252  Sum_probs=45.9

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCc------cccCCHHhhhcCCCEEEE
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPY------AFYSNVCELAANSDALII  217 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~------~~~~~l~ell~~aDiV~l  217 (331)
                      -+.|++|+|+|-|.+|+.+++.++.+|++|+++++.+..     ...      .....+.++++++|+|+.
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~  102 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVST  102 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence            467999999999999999999999999999999877654     111      111235566678888875

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.22  E-value=0.0065  Score=56.87  Aligned_cols=87  Identities=18%  Similarity=0.248  Sum_probs=57.1

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC---------CC------ccccCCHHhhhcCCCEEEEeccCCh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP---------VP------YAFYSNVCELAANSDALIICCALTD  223 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~---------~~------~~~~~~l~ell~~aDiV~l~~P~t~  223 (331)
                      ..+|+|||.|.+|..++..+...+.  +|..+|...+.         ..      .....+..+.+++||+|+++.+...
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~~   88 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAPQ   88 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            4689999999999999999876665  89999986432         11      0011245678999999999986432


Q ss_pred             hh-----------hhhcc--HHHHhcCCCCcEEEEcC
Q 020073          224 QT-----------RRMIN--REVMLALGKEGIIVNVG  247 (331)
Q Consensus       224 ~t-----------~~li~--~~~l~~mk~ga~lIn~s  247 (331)
                      .-           ..++.  .+.+....|.+++|+++
T Consensus        89 k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  125 (326)
T 2zqz_A           89 KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA  125 (326)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            11           11110  11222336889999984

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.22  E-value=0.0056  Score=57.58  Aligned_cols=87  Identities=26%  Similarity=0.310  Sum_probs=59.8

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc---cc--C-CHHh-hhcCCCEEEEeccCChhhh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA---FY--S-NVCE-LAANSDALIICCALTDQTR  226 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~---~~--~-~l~e-ll~~aDiV~l~~P~t~~t~  226 (331)
                      .|.+|.|+|.|.+|..+++.++.+|++|++.+++.++      .+..   ..  . ++.+ +....|+|+-++..++  .
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~--~  256 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT--D  256 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST--T
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCc--H
Confidence            4789999999999999999999999999999887665      1111   01  1 3333 2246899998876520  0


Q ss_pred             hhccHHHHhcCCCCcEEEEcCCC
Q 020073          227 RMINREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~srg  249 (331)
                      ..+ ...++.++++..++.++..
T Consensus       257 ~~~-~~~~~~l~~~G~iv~~g~~  278 (360)
T 1piw_A          257 IDF-NIMPKAMKVGGRIVSISIP  278 (360)
T ss_dssp             CCT-TTGGGGEEEEEEEEECCCC
T ss_pred             HHH-HHHHHHhcCCCEEEEecCC
Confidence            111 2345668888888888643

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.21  E-value=0.011  Score=50.89  Aligned_cols=86  Identities=14%  Similarity=0.167  Sum_probs=57.0

Q ss_pred             eEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc------ccCCHHhhhcCCCEEEEeccCC-----hh
Q 020073          163 RVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA------FYSNVCELAANSDALIICCALT-----DQ  224 (331)
Q Consensus       163 ~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~------~~~~l~ell~~aDiV~l~~P~t-----~~  224 (331)
                      +|.|.|. |.||+.+++.|...|.+|++.+|+...      ....      ...+. +.+..+|+|+.+....     ..
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~~~~~~~~   80 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTE-ADLDSVDAVVDALSVPWGSGRGY   80 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCH-HHHTTCSEEEECCCCCTTSSCTH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccH-hhcccCCEEEECCccCCCcchhh
Confidence            6899996 999999999999999999999987532      0111      11122 6788999999888542     11


Q ss_pred             hhhhccHHHHhcCC-CCcEEEEcCCC
Q 020073          225 TRRMINREVMLALG-KEGIIVNVGRG  249 (331)
Q Consensus       225 t~~li~~~~l~~mk-~ga~lIn~srg  249 (331)
                      +.-......++.|+ .|..+|++|..
T Consensus        81 ~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           81 LHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             HHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             HHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            11111344555564 34678888764

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=96.19  E-value=0.021  Score=53.83  Aligned_cols=82  Identities=15%  Similarity=0.118  Sum_probs=53.3

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCC-CEEEEECCCCCC---CC----------ccccCCHHhhhcCCCEEEEeccCChhhh
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFG-CNVLYNSRSKKP---VP----------YAFYSNVCELAANSDALIICCALTDQTR  226 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~~~~~~~---~~----------~~~~~~l~ell~~aDiV~l~~P~t~~t~  226 (331)
                      .+|+|+| +|.||+.+.+.|.... +++++..+....   ..          .....++++ +..+|+|+.|+|.... .
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~s-~   82 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGVF-A   82 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTHH-H
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHHH-H
Confidence            5899999 7999999999998654 477665443221   10          011234444 5789999999986633 2


Q ss_pred             hhccHHHHhcCCCCcEEEEcCCC
Q 020073          227 RMINREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~srg  249 (331)
                      .+. ...   ++.|..+|+.|--
T Consensus        83 ~~a-~~~---~~aG~~VId~Sa~  101 (345)
T 2ozp_A           83 REF-DRY---SALAPVLVDLSAD  101 (345)
T ss_dssp             HTH-HHH---HTTCSEEEECSST
T ss_pred             HHH-HHH---HHCCCEEEEcCcc
Confidence            222 222   3678889998763

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=96.19  E-value=0.0035  Score=55.13  Aligned_cols=62  Identities=18%  Similarity=0.111  Sum_probs=45.1

Q ss_pred             CceEEEEecChHHHHHHHHH--hhCCCEEE-EECCCCC-CC------C--ccccCCHHhhhcC--CCEEEEeccCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRL--QAFGCNVL-YNSRSKK-PV------P--YAFYSNVCELAAN--SDALIICCALT  222 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l--~~~G~~V~-~~~~~~~-~~------~--~~~~~~l~ell~~--aDiV~l~~P~t  222 (331)
                      ..+++|+|+|++|+++++.+  ...|++++ ++|..+. ..      +  +....++.+++++  .|++++|+|..
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~  159 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPST  159 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCGG
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCch
Confidence            46899999999999999973  45688876 5676665 31      1  1124578888764  89999999854

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=96.17  E-value=0.012  Score=54.12  Aligned_cols=102  Identities=19%  Similarity=0.206  Sum_probs=66.9

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhCCCEEE-EECCCCC-C--CCccccCCHHhhhc--CCCEEEEeccCChhhhhhccHHHH
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAFGCNVL-YNSRSKK-P--VPYAFYSNVCELAA--NSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~~~~~~-~--~~~~~~~~l~ell~--~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      .+++|+|. |++|+.+++.+...|++++ .+++... .  .+...+.+++++..  ..|++++++|.. .+...+ .+.+
T Consensus        14 ~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~ii~vp~~-~~~~~v-~ea~   91 (294)
T 2yv1_A           14 TKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVKETDANASVIFVPAP-FAKDAV-FEAI   91 (294)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHH-HHHHHH-HHHH
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCEEEEccCHH-HHHHHH-HHHH
Confidence            35778898 9999999999998899743 5565431 1  34555789999998  899999999844 334444 2222


Q ss_pred             hcCCCCcEEEEcCCCC-ccCHHHHHHHHHhCCce
Q 020073          235 LALGKEGIIVNVGRGA-VIDENEMVRCLVRGEIA  267 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~-~vd~~al~~aL~~~~i~  267 (331)
                      + .+... +|..+.|- .-+++.+.++.++..+.
T Consensus        92 ~-~Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi~  123 (294)
T 2yv1_A           92 D-AGIEL-IVVITEHIPVHDTMEFVNYAEDVGVK  123 (294)
T ss_dssp             H-TTCSE-EEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             H-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            2 22222 34444442 23456888888876664

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.17  E-value=0.0037  Score=61.21  Aligned_cols=42  Identities=24%  Similarity=0.300  Sum_probs=37.3

Q ss_pred             CCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       153 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      +|..-+++|++|.|||.|.+|...++.|...|++|+++++..
T Consensus         4 ~P~~~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A            4 LPIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             EEEEECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             eeeEEECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            344567899999999999999999999999999999998754

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=96.16  E-value=0.0063  Score=57.05  Aligned_cols=63  Identities=14%  Similarity=0.206  Sum_probs=46.8

Q ss_pred             ceEEEEecChHHH-HHHHHHhhC-CCEEE-EECCCCCC-C-------CccccCCHHhhhcC--CCEEEEeccCChh
Q 020073          162 KRVGIVGLGNIGL-QVAKRLQAF-GCNVL-YNSRSKKP-V-------PYAFYSNVCELAAN--SDALIICCALTDQ  224 (331)
Q Consensus       162 ~~vgIiG~G~IG~-~~A~~l~~~-G~~V~-~~~~~~~~-~-------~~~~~~~l~ell~~--aDiV~l~~P~t~~  224 (331)
                      .++||||+|.||+ ..++.++.. +++|+ +++++... .       +...+.++++++.+  .|+|++|+|....
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   78 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTH   78 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGH
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHH
Confidence            4799999999998 577777665 67875 67776221 1       23456799999986  8999999986543

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.14  E-value=0.0035  Score=59.16  Aligned_cols=87  Identities=23%  Similarity=0.373  Sum_probs=58.9

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCC---CC------CCcccc-C-CHHhhh----cCCCEEEEeccCC
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK---KP------VPYAFY-S-NVCELA----ANSDALIICCALT  222 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~---~~------~~~~~~-~-~l~ell----~~aDiV~l~~P~t  222 (331)
                      .+.|++|.|+|.|.||..+++.++.+|++|++.+++.   ++      .+.... . ++.+.+    ...|+|+.++...
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~  257 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD  257 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCCh
Confidence            5679999999999999999999999999999998876   33      111111 0 111111    3478888877643


Q ss_pred             hhhhhhccHHHHhcCCCCcEEEEcCC
Q 020073          223 DQTRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       223 ~~t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      ...   + ...+..|+++..+|+++-
T Consensus       258 ~~~---~-~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          258 VNI---L-GNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             THH---H-HHHGGGEEEEEEEEECSC
T ss_pred             HHH---H-HHHHHHHhcCCEEEEEec
Confidence            222   0 344566788888887764

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.13  E-value=0.021  Score=55.43  Aligned_cols=87  Identities=11%  Similarity=0.188  Sum_probs=66.3

Q ss_pred             CCCceEEEEecC----------hHHHHHHHHHhhC-CCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhh
Q 020073          159 LGGKRVGIVGLG----------NIGLQVAKRLQAF-GCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRR  227 (331)
Q Consensus       159 l~g~~vgIiG~G----------~IG~~~A~~l~~~-G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~  227 (331)
                      +.|++|+|+|+.          +-...+++.|... |.+|.+||+.....  ....++++.++.+|+|+++++.. +.+.
T Consensus       313 ~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~--~~~~~~~~~~~~ad~vvi~t~~~-~f~~  389 (431)
T 3ojo_A          313 LSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD--FVEHDMSHAVKDASLVLILSDHS-EFKN  389 (431)
T ss_dssp             SSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT--TBCSTTHHHHTTCSEEEECSCCG-GGTS
T ss_pred             cCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc--cccCCHHHHHhCCCEEEEecCCH-HHhc
Confidence            589999999974          4578999999999 99999999876542  23467899999999999998754 3333


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCCc
Q 020073          228 MINREVMLALGKEGIIVNVGRGAV  251 (331)
Q Consensus       228 li~~~~l~~mk~ga~lIn~srg~~  251 (331)
                       ++.+.++.|+ +.+++|+ |+-+
T Consensus       390 -~d~~~~~~~~-~~~i~D~-r~~~  410 (431)
T 3ojo_A          390 -LSDSHFDKMK-HKVIFDT-KNVV  410 (431)
T ss_dssp             -CCGGGGTTCS-SCEEEES-SCCC
T ss_pred             -cCHHHHHhCC-CCEEEEC-CCCC
Confidence             3444456676 6788986 6544

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=96.13  E-value=0.053  Score=51.35  Aligned_cols=89  Identities=15%  Similarity=0.174  Sum_probs=66.2

Q ss_pred             CCCceEEEEecC--hHHHHHHHHHhhCCCEEEEECCCCCCC-----------------C--ccccCCHHhhhcCCCEEEE
Q 020073          159 LGGKRVGIVGLG--NIGLQVAKRLQAFGCNVLYNSRSKKPV-----------------P--YAFYSNVCELAANSDALII  217 (331)
Q Consensus       159 l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~~-----------------~--~~~~~~l~ell~~aDiV~l  217 (331)
                      +.|++|++||=|  +++.+++..+..+|++|.+..+..-..                 +  .....+++++++++|+|..
T Consensus       178 l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDVVyt  257 (365)
T 4amu_A          178 LKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVIYT  257 (365)
T ss_dssp             CTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHHTTTCSEEEE
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHHhcCCCEEEe
Confidence            789999999977  889999999999999999887642111                 1  1234689999999999987


Q ss_pred             ec--cCCh--h---------hhhhccHHHHhcCCCCcEEEEcC
Q 020073          218 CC--ALTD--Q---------TRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       218 ~~--P~t~--~---------t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      -+  .-..  +         ...-++.+.++.+|++++|.-+.
T Consensus       258 d~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcL  300 (365)
T 4amu_A          258 DVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCL  300 (365)
T ss_dssp             CCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECS
T ss_pred             cccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence            32  1111  1         12347899999999999988774

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.13  E-value=0.0079  Score=54.90  Aligned_cols=60  Identities=20%  Similarity=0.290  Sum_probs=46.0

Q ss_pred             CceEEEEe-cChHHHHHHHHHhh-CCCEEEE-ECCCCCC-------------CCccccCCHHhhhcCCCEEEEecc
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQA-FGCNVLY-NSRSKKP-------------VPYAFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~~-~G~~V~~-~~~~~~~-------------~~~~~~~~l~ell~~aDiV~l~~P  220 (331)
                      ..+|+|+| +|.||+.+++.+.. -++++.+ ++++..+             .+.....++++++.++|+|+-+.+
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~   82 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL   82 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC
Confidence            46899999 99999999998874 4778765 6776432             122335789999999999998875

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.12  E-value=0.0068  Score=56.04  Aligned_cols=66  Identities=15%  Similarity=0.096  Sum_probs=46.8

Q ss_pred             CccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCC-------CccccCCHHhhhcCCCEEEEeccC
Q 020073          156 GSKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPV-------PYAFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       156 ~~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~-------~~~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      ..+..+++|.|.|. |.||+.+++.|...|++|++.+|+....       +.....++.+++..+|+|+.+...
T Consensus        14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~   87 (347)
T 4id9_A           14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAF   87 (347)
T ss_dssp             -------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCcc
Confidence            34688999999996 9999999999999999999998876431       111223567888999999887654

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.12  E-value=0.017  Score=53.51  Aligned_cols=61  Identities=18%  Similarity=0.053  Sum_probs=43.9

Q ss_pred             CCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC-------------CCc-------cccCCHHhhhc--CCCEEE
Q 020073          160 GGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP-------------VPY-------AFYSNVCELAA--NSDALI  216 (331)
Q Consensus       160 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~~~-------~~~~~l~ell~--~aDiV~  216 (331)
                      ..++|.|.|. |.||+.+++.|...|.+|++.+|+...             .+.       ....++.++++  ++|+|+
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi   88 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVV   88 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEE
Confidence            4678999997 999999999999999999999887621             000       11234566777  788777


Q ss_pred             Eecc
Q 020073          217 ICCA  220 (331)
Q Consensus       217 l~~P  220 (331)
                      .+..
T Consensus        89 ~~a~   92 (346)
T 3i6i_A           89 STVG   92 (346)
T ss_dssp             ECCC
T ss_pred             ECCc
Confidence            7664

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=96.06  E-value=0.0039  Score=59.80  Aligned_cols=63  Identities=16%  Similarity=0.194  Sum_probs=46.7

Q ss_pred             ceEEEEecChHHHHHHHHHhhC---------CCEEE-EECCCCCC-------CCc-cccCCHHhhhc--CCCEEEEeccC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF---------GCNVL-YNSRSKKP-------VPY-AFYSNVCELAA--NSDALIICCAL  221 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~---------G~~V~-~~~~~~~~-------~~~-~~~~~l~ell~--~aDiV~l~~P~  221 (331)
                      .+|||||+|.||+..++.++..         +++|+ ++|+++..       .+. ..+.+++++++  +.|+|++|+|.
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~  106 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN  106 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence            4899999999999988888753         45665 56776543       122 34679999986  57999999986


Q ss_pred             Chh
Q 020073          222 TDQ  224 (331)
Q Consensus       222 t~~  224 (331)
                      ...
T Consensus       107 ~~H  109 (412)
T 4gqa_A          107 HLH  109 (412)
T ss_dssp             GGH
T ss_pred             HHH
Confidence            543

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=96.05  E-value=0.052  Score=51.32  Aligned_cols=146  Identities=15%  Similarity=0.079  Sum_probs=92.5

Q ss_pred             HHHHhcCCCceEEEEccCCCCCCChhHHh-hCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCC
Q 020073           75 LDILRLLPKLRLVVTASAGVNHIHMPECR-RRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDY  153 (331)
Q Consensus        75 ~~~l~~~p~Lk~I~~~~~G~d~id~~~~~-~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~  153 (331)
                      ..+|.++..  .|...+  +.+=.++.+. -.+|+|.|+.+....++=  +|+=++...++                   
T Consensus       116 arvLs~~~D--~IviR~--~~~~~~~~lA~~s~vPVINa~~~~~HPtQ--aLaDl~Ti~E~-------------------  170 (359)
T 2w37_A          116 AKVLGSMFD--GIEFRG--FKQSDAEILARDSGVPVWNGLTDEWHPTQ--MLADFMTVKEN-------------------  170 (359)
T ss_dssp             HHHHHHHCS--EEEEES--SCHHHHHHHHHHSSSCEEEEECSSCCHHH--HHHHHHHHHHH-------------------
T ss_pred             HHHHHHhcC--EEEEec--CChHHHHHHHHhCCCCEEcCCCCCCCccH--HHHHHHHHHHH-------------------
Confidence            445555543  343333  2332334443 458999997765544432  22222221111                   


Q ss_pred             CCCccCCCceEEEEecC--hHHHHHHHHHhhCCCEEEEECCCCCC-C--------------C--ccccCCHHhhhcCCCE
Q 020073          154 PLGSKLGGKRVGIVGLG--NIGLQVAKRLQAFGCNVLYNSRSKKP-V--------------P--YAFYSNVCELAANSDA  214 (331)
Q Consensus       154 ~~~~~l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~-~--------------~--~~~~~~l~ell~~aDi  214 (331)
                       .| .+.|.+|++||=|  +++.+++..+..+|++|.+..+..-. .              +  .....+++++++++|+
T Consensus       171 -~g-~l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDv  248 (359)
T 2w37_A          171 -FG-KLQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNV  248 (359)
T ss_dssp             -HS-CCTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSE
T ss_pred             -hC-CcCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCE
Confidence             11 3789999999975  99999999999999999988764321 0              1  2235789999999999


Q ss_pred             EEEecc-C-C---h-h-----hhhhccHHHHhcCC---CCcEEEEcC
Q 020073          215 LIICCA-L-T---D-Q-----TRRMINREVMLALG---KEGIIVNVG  247 (331)
Q Consensus       215 V~l~~P-~-t---~-~-----t~~li~~~~l~~mk---~ga~lIn~s  247 (331)
                      |..-.= . .   . +     ...-++.+.++++|   ++++|.-+.
T Consensus       249 vytd~w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcL  295 (359)
T 2w37_A          249 VYTDVWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCL  295 (359)
T ss_dssp             EEECCSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECS
T ss_pred             EEEcccccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCC
Confidence            988442 0 0   1 1     13456899999999   899988774

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.04  E-value=0.016  Score=52.39  Aligned_cols=61  Identities=15%  Similarity=0.127  Sum_probs=45.0

Q ss_pred             CceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCC-------CC---------CCc-------cccCCHHhhhcCCCEEE
Q 020073          161 GKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSK-------KP---------VPY-------AFYSNVCELAANSDALI  216 (331)
Q Consensus       161 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~-------~~---------~~~-------~~~~~l~ell~~aDiV~  216 (331)
                      +++|.|.|. |.||+.+++.|...|++|++.+|+.       ..         .+.       ....++.++++.+|+|+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   81 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI   81 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence            578999995 9999999999998899999988875       10         011       11134667788888888


Q ss_pred             EeccC
Q 020073          217 ICCAL  221 (331)
Q Consensus       217 l~~P~  221 (331)
                      .+.+.
T Consensus        82 ~~a~~   86 (307)
T 2gas_A           82 CAAGR   86 (307)
T ss_dssp             ECSSS
T ss_pred             ECCcc
Confidence            77654

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.04  E-value=0.012  Score=53.89  Aligned_cols=40  Identities=28%  Similarity=0.392  Sum_probs=35.3

Q ss_pred             CccCCCceEEEEecC---hHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          156 GSKLGGKRVGIVGLG---NIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G---~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      ...+.||++.|.|.+   .||+++|+.|...|++|++.+|+..
T Consensus        25 ~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~   67 (296)
T 3k31_A           25 GMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSET   67 (296)
T ss_dssp             CCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             hhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChH
Confidence            346899999999986   8999999999999999999888753

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.03  E-value=0.021  Score=55.23  Aligned_cols=104  Identities=16%  Similarity=0.242  Sum_probs=64.5

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCCEEEE-ECCCC----CC----CC------------------c--cccCCHH
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY-NSRSK----KP----VP------------------Y--AFYSNVC  206 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~-~~~~~----~~----~~------------------~--~~~~~l~  206 (331)
                      |.++.|++|.|.|+|++|+.+|+.|...|++|+. .|.+.    ..    .+                  +  ....+.+
T Consensus       207 g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~~  286 (421)
T 2yfq_A          207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDE  286 (421)
T ss_dssp             TCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCcc
Confidence            4468999999999999999999999999999984 45542    10    00                  0  0001123


Q ss_pred             hhh-cCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          207 ELA-ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       207 ell-~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      +++ ..||+++-|.+     .+.|+.+...+++ ..+++..+-+.+- .+ -.+.|.++.|.
T Consensus       287 ~~~~~~~DIliP~A~-----~n~i~~~~A~~l~-ak~VvEgAN~P~t-~e-a~~il~~~GI~  340 (421)
T 2yfq_A          287 EFWTKEYDIIVPAAL-----ENVITGERAKTIN-AKLVCEAANGPTT-PE-GDKVLTERGIN  340 (421)
T ss_dssp             --------CEEECSC-----SSCSCHHHHTTCC-CSEEECCSSSCSC-HH-HHHHHHHHTCE
T ss_pred             chhcCCccEEEEcCC-----cCcCCcccHHHcC-CeEEEeCCccccC-HH-HHHHHHHCCCE
Confidence            333 35888887753     4567888878784 5688888888875 33 33555555554

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.02  E-value=0.016  Score=52.87  Aligned_cols=94  Identities=18%  Similarity=0.203  Sum_probs=62.3

Q ss_pred             ccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC-----------CC--c-------cccCCHHhhh------
Q 020073          157 SKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------VP--Y-------AFYSNVCELA------  209 (331)
Q Consensus       157 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------~~--~-------~~~~~l~ell------  209 (331)
                      .++.||++.|.| .|.||+++|+.|...|++|++.+++...           .+  .       ....++++++      
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            468999999999 5899999999999999999988876531           01  0       0011233333      


Q ss_pred             -cCCCEEEEeccCCh----------h-hhh----------hccHHHHhcCCCCcEEEEcCCCC
Q 020073          210 -ANSDALIICCALTD----------Q-TRR----------MINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       210 -~~aDiV~l~~P~t~----------~-t~~----------li~~~~l~~mk~ga~lIn~srg~  250 (331)
                       ..-|+++.+.-...          + ...          .+.+..+..|+++..+||++...
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~  185 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIV  185 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTH
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechH
Confidence             36799998753210          0 000          12345667788888999998753

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=96.01  E-value=0.0031  Score=60.08  Aligned_cols=62  Identities=18%  Similarity=0.287  Sum_probs=48.2

Q ss_pred             ceEEEEecC-hHHHHHHHHHhhC-CCEEE-EECCCCCC-------CCccccCCHHhhhcC--CCEEEEeccCCh
Q 020073          162 KRVGIVGLG-NIGLQVAKRLQAF-GCNVL-YNSRSKKP-------VPYAFYSNVCELAAN--SDALIICCALTD  223 (331)
Q Consensus       162 ~~vgIiG~G-~IG~~~A~~l~~~-G~~V~-~~~~~~~~-------~~~~~~~~l~ell~~--aDiV~l~~P~t~  223 (331)
                      .+|||||+| .+|+..++.+... +++++ ++++++..       .+...+.++++++++  .|+|++++|...
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~   76 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQF   76 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGG
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHH
Confidence            479999999 9999999998865 56765 57776543       233456799999874  999999998653

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.01  E-value=0.0092  Score=55.73  Aligned_cols=85  Identities=18%  Similarity=0.178  Sum_probs=59.1

Q ss_pred             CCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc---c---cCCHHhhhc-----CCCEEEEeccC
Q 020073          160 GGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA---F---YSNVCELAA-----NSDALIICCAL  221 (331)
Q Consensus       160 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~---~---~~~l~ell~-----~aDiV~l~~P~  221 (331)
                      .|+++.|+|. |.||+.+++.++..|++|++.+++...      .+..   .   ..++.+.+.     ..|+|+.+...
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~  248 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS  248 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence            4789999999 899999999999999999999887653      1111   0   123443332     47888887653


Q ss_pred             ChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 020073          222 TDQTRRMINREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       222 t~~t~~li~~~~l~~mk~ga~lIn~srg  249 (331)
                      .+..     ...++.|+++..+|+++..
T Consensus       249 ~~~~-----~~~~~~l~~~G~iv~~g~~  271 (347)
T 2hcy_A          249 EAAI-----EASTRYVRANGTTVLVGMP  271 (347)
T ss_dssp             HHHH-----HHHTTSEEEEEEEEECCCC
T ss_pred             HHHH-----HHHHHHHhcCCEEEEEeCC
Confidence            2221     3456678888888888753

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=96.00  E-value=0.11  Score=50.17  Aligned_cols=104  Identities=20%  Similarity=0.224  Sum_probs=71.1

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhh-CCCEEEE-ECCCC----C---C--------------CCc--cccCCHHhhh-
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQA-FGCNVLY-NSRSK----K---P--------------VPY--AFYSNVCELA-  209 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~-~G~~V~~-~~~~~----~---~--------------~~~--~~~~~l~ell-  209 (331)
                      |.++.|+++.|.|+|++|+.+|+.|.. .|.+|+. .|.+.    .   .              .++  ....+.++++ 
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~~~eil~  283 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE  283 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEECHHHHTT
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcCchhhhc
Confidence            457899999999999999999999998 9999884 44421    0   0              000  0111345554 


Q ss_pred             cCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          210 ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       210 ~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      ..||+++-|..     .+.|+.+...+++ ..+++-.+-+.+- .++ .+.|.++.+.
T Consensus       284 ~~~DIliP~A~-----~n~i~~~~a~~l~-ak~V~EgAN~p~t-~~a-~~~l~~~Gi~  333 (415)
T 2tmg_A          284 LDVDILVPAAL-----EGAIHAGNAERIK-AKAVVEGANGPTT-PEA-DEILSRRGIL  333 (415)
T ss_dssp             CSCSEEEECSS-----TTSBCHHHHTTCC-CSEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             CCCcEEEecCC-----cCccCcccHHHcC-CeEEEeCCCcccC-HHH-HHHHHHCCCE
Confidence            47999998864     4467778777774 5678888888864 333 3556666664

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=95.99  E-value=0.014  Score=54.11  Aligned_cols=90  Identities=14%  Similarity=0.157  Sum_probs=65.8

Q ss_pred             cCCCceEEEEec---ChHHHHHHHHHhhCCCEEEEECCCCCC-C----------Cc--cccCCHHhhhcCCCEEEEeccC
Q 020073          158 KLGGKRVGIVGL---GNIGLQVAKRLQAFGCNVLYNSRSKKP-V----------PY--AFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       158 ~l~g~~vgIiG~---G~IG~~~A~~l~~~G~~V~~~~~~~~~-~----------~~--~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      .+.|.+|++||=   |++.++++..+..+|++|.+..+..-. .          +.  ....+++++++++|+|..-.=-
T Consensus       152 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q  231 (308)
T 1ml4_A          152 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQ  231 (308)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCC
T ss_pred             CCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCcc
Confidence            378999999997   589999999999999999988764321 1          21  2346899999999999885421


Q ss_pred             C------hhh-----hhhccHHHHhcCCCCcEEEEcC
Q 020073          222 T------DQT-----RRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       222 t------~~t-----~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      .      .+.     ..-++++.++++|++++|.-+.
T Consensus       232 ~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  268 (308)
T 1ml4_A          232 KERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  268 (308)
T ss_dssp             GGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             ccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCC
Confidence            1      111     2345777888888888877664

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.98  E-value=0.0045  Score=58.65  Aligned_cols=84  Identities=24%  Similarity=0.330  Sum_probs=58.5

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc---ccCC---HHhhhcCCCEEEEeccCChhhhh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA---FYSN---VCELAANSDALIICCALTDQTRR  227 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~---~~~~---l~ell~~aDiV~l~~P~t~~t~~  227 (331)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++++      .+..   ...+   ++++....|+|+-++.....   
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~---  270 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN---  270 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCC---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHH---
Confidence            4789999999999999999999999999998877654      1111   1111   22333567888888754321   


Q ss_pred             hccHHHHhcCCCCcEEEEcCC
Q 020073          228 MINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       228 li~~~~l~~mk~ga~lIn~sr  248 (331)
                        -...++.++++..+|.++.
T Consensus       271 --~~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          271 --LDDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             --HHHHHTTEEEEEEEEECCC
T ss_pred             --HHHHHHHhccCCEEEEecc
Confidence              1345677888888888764

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.98  E-value=0.0082  Score=56.32  Aligned_cols=90  Identities=14%  Similarity=0.261  Sum_probs=59.3

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC----------C-Cc------cccCCHHhhhcCCCEEEEe
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP----------V-PY------AFYSNVCELAANSDALIIC  218 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~----------~-~~------~~~~~l~ell~~aDiV~l~  218 (331)
                      ....++|+|||.|.||..+|..+...|.  +|..+|.....          . .+      ....+.+ .+++||+|+++
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~   94 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIIT   94 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEEC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEc
Confidence            3567899999999999999999887776  89999986532          0 00      1122444 69999999998


Q ss_pred             ccCC--h-hhh-hhc--cH-------HHHhcCCCCcEEEEcCC
Q 020073          219 CALT--D-QTR-RMI--NR-------EVMLALGKEGIIVNVGR  248 (331)
Q Consensus       219 ~P~t--~-~t~-~li--~~-------~~l~~mk~ga~lIn~sr  248 (331)
                      ....  + .|+ .++  |.       +.+....|.+++++++-
T Consensus        95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN  137 (331)
T 4aj2_A           95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN  137 (331)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            6321  1 122 122  11       23333478999999983

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=95.97  E-value=0.0047  Score=59.97  Aligned_cols=62  Identities=18%  Similarity=0.246  Sum_probs=48.6

Q ss_pred             ceEEEEec----ChHHHHHHHHHhhC--CCEEE-EECCCCCC-------CCc---cccCCHHhhhc--CCCEEEEeccCC
Q 020073          162 KRVGIVGL----GNIGLQVAKRLQAF--GCNVL-YNSRSKKP-------VPY---AFYSNVCELAA--NSDALIICCALT  222 (331)
Q Consensus       162 ~~vgIiG~----G~IG~~~A~~l~~~--G~~V~-~~~~~~~~-------~~~---~~~~~l~ell~--~aDiV~l~~P~t  222 (331)
                      .+|||||+    |.||+..++.++..  +++|+ +++++...       .+.   ..+.++++++.  +.|+|++|+|..
T Consensus        21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~~  100 (438)
T 3btv_A           21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQVA  100 (438)
T ss_dssp             EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCHH
T ss_pred             CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCcH
Confidence            58999999    99999999999886  77864 67876543       122   24678999986  689999999855


Q ss_pred             h
Q 020073          223 D  223 (331)
Q Consensus       223 ~  223 (331)
                      .
T Consensus       101 ~  101 (438)
T 3btv_A          101 S  101 (438)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=95.97  E-value=0.0093  Score=55.99  Aligned_cols=98  Identities=11%  Similarity=0.114  Sum_probs=61.2

Q ss_pred             ceEEEEecChHHHHHHHHHhhC---------CCEEE-EECCCCCC-CC---ccccCCHHhhhcCCCEEEEeccCChhhhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF---------GCNVL-YNSRSKKP-VP---YAFYSNVCELAANSDALIICCALTDQTRR  227 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~---------G~~V~-~~~~~~~~-~~---~~~~~~l~ell~~aDiV~l~~P~t~~t~~  227 (331)
                      .++||||+|.||+.+++.+...         +++|. +++++..+ .+   ...+.++++++ +.|+|+.|+|....-..
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~~~~~~~d~~~ll-~iDvVve~t~~~~~a~~   82 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIPQELLRAEPFDLL-EADLVVEAMGGVEAPLR   82 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSCGGGEESSCCCCT-TCSEEEECCCCSHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccCcccccCCHHHHh-CCCEEEECCCCcHHHHH
Confidence            4799999999999999998764         45664 56666443 11   12356788888 99999999986532121


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHhC
Q 020073          228 MINREVMLALGKEGIIVNVGRGAV-IDENEMVRCLVRG  264 (331)
Q Consensus       228 li~~~~l~~mk~ga~lIn~srg~~-vd~~al~~aL~~~  264 (331)
                      .+ .   +.++.|.-+|...-..+ -.-+.|.++-+++
T Consensus        83 ~~-~---~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           83 LV-L---PALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             HH-H---HHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             HH-H---HHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence            22 1   23455554554322222 2445677666665

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.97  E-value=0.0047  Score=57.64  Aligned_cols=85  Identities=18%  Similarity=0.271  Sum_probs=59.3

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccc-----cCCHHhh----hcCCCEEEEeccCChh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAF-----YSNVCEL----AANSDALIICCALTDQ  224 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~-----~~~l~el----l~~aDiV~l~~P~t~~  224 (331)
                      .|++|.|+|.|.||..+++.++.+|++|++.+++..+      .+...     ..++.+.    ....|+|+.++...+.
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~  243 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPA  243 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHH
Confidence            4789999999999999999999999999999887543      12110     1123222    2468988888753222


Q ss_pred             hhhhccHHHHhcCCCCcEEEEcCCC
Q 020073          225 TRRMINREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       225 t~~li~~~~l~~mk~ga~lIn~srg  249 (331)
                      .     ...++.++++..++.++..
T Consensus       244 ~-----~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          244 F-----QSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             H-----HHHHHHEEEEEEEEECCCC
T ss_pred             H-----HHHHHHhhcCCEEEEeccc
Confidence            1     4456678888888888754

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=95.95  E-value=0.0089  Score=55.49  Aligned_cols=86  Identities=17%  Similarity=0.279  Sum_probs=56.3

Q ss_pred             ceEEEEecChHHHHHHHHHhhCC--CEEEEECCCCCC---------CC------ccccCCHHhhhcCCCEEEEeccCChh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFG--CNVLYNSRSKKP---------VP------YAFYSNVCELAANSDALIICCALTDQ  224 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~~---------~~------~~~~~~l~ell~~aDiV~l~~P~t~~  224 (331)
                      ++|+|||.|.+|..++..+...+  -+|..+|...++         ..      .....+-.+.+++||+|+++.+....
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~   80 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR   80 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            47999999999999999998766  389999987532         10      01111236789999999999864321


Q ss_pred             -----------hhhhcc--HHHHhcCCCCcEEEEcC
Q 020073          225 -----------TRRMIN--REVMLALGKEGIIVNVG  247 (331)
Q Consensus       225 -----------t~~li~--~~~l~~mk~ga~lIn~s  247 (331)
                                 +..++.  .+.+....|.+++|+++
T Consensus        81 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  116 (310)
T 2xxj_A           81 PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT  116 (310)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec
Confidence                       111110  11222336889999984

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=95.94  E-value=0.0046  Score=59.14  Aligned_cols=64  Identities=14%  Similarity=0.057  Sum_probs=49.1

Q ss_pred             CceEEEEecCh---HHHHHHHHHhhCC-CEEE--EECCCCCC-------CCc---cccCCHHhhhcC-------CCEEEE
Q 020073          161 GKRVGIVGLGN---IGLQVAKRLQAFG-CNVL--YNSRSKKP-------VPY---AFYSNVCELAAN-------SDALII  217 (331)
Q Consensus       161 g~~vgIiG~G~---IG~~~A~~l~~~G-~~V~--~~~~~~~~-------~~~---~~~~~l~ell~~-------aDiV~l  217 (331)
                      -.+|||||+|.   ||+..+..++..+ ++++  ++|+++..       .+.   ..+.++++++..       .|+|++
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i   91 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSI   91 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEE
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEE
Confidence            46899999999   9999998887654 6776  46876543       233   456799999875       999999


Q ss_pred             eccCChh
Q 020073          218 CCALTDQ  224 (331)
Q Consensus       218 ~~P~t~~  224 (331)
                      |+|....
T Consensus        92 ~tp~~~H   98 (398)
T 3dty_A           92 ATPNGTH   98 (398)
T ss_dssp             ESCGGGH
T ss_pred             CCCcHHH
Confidence            9986643

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=95.92  E-value=0.051  Score=51.32  Aligned_cols=91  Identities=12%  Similarity=0.099  Sum_probs=65.3

Q ss_pred             ccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC-C------------------CccccCCHHhhhcCCCEEE
Q 020073          157 SKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP-V------------------PYAFYSNVCELAANSDALI  216 (331)
Q Consensus       157 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~------------------~~~~~~~l~ell~~aDiV~  216 (331)
                      ..+.|.+|++|| .-++..+++..+..+|++|.+..+..-. .                  .+....+++|+++++|+|.
T Consensus       184 ~~l~glkva~vGD~~nva~Sl~~~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvy  263 (353)
T 3sds_A          184 LGLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIV  263 (353)
T ss_dssp             CSCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEE
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEE
Confidence            458999999999 4578888899999999999988765321 0                  1223468999999999998


Q ss_pred             Eec--cCChh----------hhhhccHHHHhc--CCCCcEEEEcC
Q 020073          217 ICC--ALTDQ----------TRRMINREVMLA--LGKEGIIVNVG  247 (331)
Q Consensus       217 l~~--P~t~~----------t~~li~~~~l~~--mk~ga~lIn~s  247 (331)
                      .-.  +...+          ....++.+.+++  +|++++|.-+.
T Consensus       264 td~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcL  308 (353)
T 3sds_A          264 TDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL  308 (353)
T ss_dssp             ECCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECS
T ss_pred             eCCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCC
Confidence            643  21111          113468888888  88888888764

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.90  E-value=0.0056  Score=57.25  Aligned_cols=84  Identities=21%  Similarity=0.211  Sum_probs=54.9

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC------CCcc---c--cCCHHhhh------cCCCEEEEeccC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP------VPYA---F--YSNVCELA------ANSDALIICCAL  221 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~------~~~~---~--~~~l~ell------~~aDiV~l~~P~  221 (331)
                      .|++|.|+|.|.||..+++.++.+|+ +|++.+++.++      .+..   .  ..++.+.+      ...|+|+.++..
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~  246 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA  246 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            68899999999999999999999999 99999887543      1110   0  11232222      146777777653


Q ss_pred             ChhhhhhccHHHHhcCCCCcEEEEcCC
Q 020073          222 TDQTRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       222 t~~t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      .+..     ...++.++++..++.++.
T Consensus       247 ~~~~-----~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          247 PKAL-----EQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             HHHH-----HHHHHHEEEEEEEEECCC
T ss_pred             HHHH-----HHHHHHHhcCCEEEEEcc
Confidence            2221     334455677777777653

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.90  E-value=0.007  Score=57.07  Aligned_cols=61  Identities=20%  Similarity=0.237  Sum_probs=47.5

Q ss_pred             CCCceEEEEec-ChHHHHHHHHHhhCCC--EEEEECCCCCC-----------C----CccccCCHHhhhcCCCEEEEec
Q 020073          159 LGGKRVGIVGL-GNIGLQVAKRLQAFGC--NVLYNSRSKKP-----------V----PYAFYSNVCELAANSDALIICC  219 (331)
Q Consensus       159 l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~~~-----------~----~~~~~~~l~ell~~aDiV~l~~  219 (331)
                      +.+++|+|||. |.+|+.+|..+..+|.  +|..+|...+.           .    ......+..+.+++||+|+++.
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvita   84 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSG   84 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEcc
Confidence            45789999998 9999999998887774  89999986432           0    1112356788999999999986

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=95.88  E-value=0.012  Score=55.07  Aligned_cols=62  Identities=16%  Similarity=0.192  Sum_probs=45.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhC-CCEEEE-ECCCCCC-------CCc------------------cccCCHHhhhcCCCE
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF-GCNVLY-NSRSKKP-------VPY------------------AFYSNVCELAANSDA  214 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~~-~~~~~~~-------~~~------------------~~~~~l~ell~~aDi  214 (331)
                      .+|||+|+|.||+.+++.+... +++|.+ .+++++.       .++                  ....+.++++.+.|+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDv   82 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCE
Confidence            4799999999999999999764 567654 5554332       110                  123478888889999


Q ss_pred             EEEeccCCh
Q 020073          215 LIICCALTD  223 (331)
Q Consensus       215 V~l~~P~t~  223 (331)
                      |+.|+|...
T Consensus        83 V~~aTp~~~   91 (334)
T 2czc_A           83 IVDATPGGI   91 (334)
T ss_dssp             EEECCSTTH
T ss_pred             EEECCCccc
Confidence            999998654

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.88  E-value=0.021  Score=53.90  Aligned_cols=84  Identities=18%  Similarity=0.280  Sum_probs=58.1

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC------CCcc----cc---CCHHhhhc-----CCCEEEEecc
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP------VPYA----FY---SNVCELAA-----NSDALIICCA  220 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~------~~~~----~~---~~l~ell~-----~aDiV~l~~P  220 (331)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++      .+..    ..   .++.+.+.     ..|+|+-++.
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  271 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  271 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            47899999999999999999999999 89999877654      1211    01   13433332     4788888775


Q ss_pred             CChhhhhhccHHHHhcCCCC-cEEEEcCC
Q 020073          221 LTDQTRRMINREVMLALGKE-GIIVNVGR  248 (331)
Q Consensus       221 ~t~~t~~li~~~~l~~mk~g-a~lIn~sr  248 (331)
                      ..+.    + ...++.++++ ..+|.++-
T Consensus       272 ~~~~----~-~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          272 NVGV----M-RNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             CHHH----H-HHHHHTBCTTTCEEEECSC
T ss_pred             CHHH----H-HHHHHHhhcCCcEEEEEcC
Confidence            3222    1 3456778888 88887764

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=95.87  E-value=0.0054  Score=57.35  Aligned_cols=63  Identities=24%  Similarity=0.235  Sum_probs=48.4

Q ss_pred             CceEEEEecC-hHHHHHHHHHhhC--CCEE-EEECCCCCC-------CCc-cccCCHHhhhc--CCCEEEEeccCCh
Q 020073          161 GKRVGIVGLG-NIGLQVAKRLQAF--GCNV-LYNSRSKKP-------VPY-AFYSNVCELAA--NSDALIICCALTD  223 (331)
Q Consensus       161 g~~vgIiG~G-~IG~~~A~~l~~~--G~~V-~~~~~~~~~-------~~~-~~~~~l~ell~--~aDiV~l~~P~t~  223 (331)
                      -.++||||+| .+|+..++.++..  ++++ .++|+++..       .+. ..+.++++++.  +.|+|++++|...
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~   94 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVEL   94 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGG
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchH
Confidence            3589999999 8999999999876  5676 467876543       122 34679999986  5899999998653

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=95.87  E-value=0.024  Score=52.29  Aligned_cols=102  Identities=22%  Similarity=0.216  Sum_probs=66.1

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhCCCEE-EEECCCC--CC-CCccccCCHHhhhc--C-CCEEEEeccCChhhhhhccHHH
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAFGCNV-LYNSRSK--KP-VPYAFYSNVCELAA--N-SDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~G~~V-~~~~~~~--~~-~~~~~~~~l~ell~--~-aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      .++.|+|. |++|+.+++.+...|+++ ..+++..  .. .+...+.+++++..  . .|++++++|.. .+...+. +.
T Consensus        14 ~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~~DvaIi~vp~~-~~~~~v~-ea   91 (297)
T 2yv2_A           14 TRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEALAEHPEINTSIVFVPAP-FAPDAVY-EA   91 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHCTTCCEEEECCCGG-GHHHHHH-HH
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCCEEEEecCHH-HHHHHHH-HH
Confidence            35677798 999999999999889984 3566543  12 45555788999987  5 99999999854 3444442 22


Q ss_pred             HhcCCCCcEEEEcCCCC-ccCHHHHHHHHHhCCce
Q 020073          234 MLALGKEGIIVNVGRGA-VIDENEMVRCLVRGEIA  267 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~-~vd~~al~~aL~~~~i~  267 (331)
                      .+ ..-.. +|..+.|- .-+++.+.++.++..+.
T Consensus        92 ~~-~Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi~  124 (297)
T 2yv2_A           92 VD-AGIRL-VVVITEGIPVHDTMRFVNYARQKGAT  124 (297)
T ss_dssp             HH-TTCSE-EEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HH-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            22 22222 34444442 23456788888876664

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=95.86  E-value=0.02  Score=53.55  Aligned_cols=105  Identities=17%  Similarity=0.176  Sum_probs=67.6

Q ss_pred             ceEEEEecChHHHHHHHHHhh---------CCCEEEE-ECCCCCC-CC-------------ccccC--CHHhhhc--CCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQA---------FGCNVLY-NSRSKKP-VP-------------YAFYS--NVCELAA--NSD  213 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~---------~G~~V~~-~~~~~~~-~~-------------~~~~~--~l~ell~--~aD  213 (331)
                      .++||||+|.||+.+++.+..         .+.+|.+ ++++... ..             ...+.  ++++++.  +.|
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD   82 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYD   82 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCS
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCC
Confidence            479999999999999999875         4667654 5554321 10             11233  8889885  589


Q ss_pred             EEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHhCCce
Q 020073          214 ALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVI-DENEMVRCLVRGEIA  267 (331)
Q Consensus       214 iV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~v-d~~al~~aL~~~~i~  267 (331)
                      +|+.|+|....+.. .-.-....++.|.-+|...-+.+. +-+.|.++.++....
T Consensus        83 vVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~  136 (327)
T 3do5_A           83 VLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVR  136 (327)
T ss_dssp             EEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCc
Confidence            99999986532111 112234557888877776555553 566777777776653

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=95.85  E-value=0.0055  Score=59.53  Aligned_cols=64  Identities=9%  Similarity=0.173  Sum_probs=48.4

Q ss_pred             CceEEEEecChHHHHHHHHHhhC-CCEEE-EECCCCCC-----C-----C---ccccC----CHHhhhc--CCCEEEEec
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAF-GCNVL-YNSRSKKP-----V-----P---YAFYS----NVCELAA--NSDALIICC  219 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~-----~-----~---~~~~~----~l~ell~--~aDiV~l~~  219 (331)
                      -.+|||||+|.||+..++.+... |++|+ ++|++++.     .     +   ...+.    +++++++  +.|+|++|+
T Consensus        20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~t   99 (444)
T 2ixa_A           20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSS   99 (444)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECC
T ss_pred             CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcC
Confidence            35899999999999999988875 67764 67876543     0     1   23356    8999997  589999999


Q ss_pred             cCChh
Q 020073          220 ALTDQ  224 (331)
Q Consensus       220 P~t~~  224 (331)
                      |....
T Consensus       100 p~~~h  104 (444)
T 2ixa_A          100 PWEWH  104 (444)
T ss_dssp             CGGGH
T ss_pred             CcHHH
Confidence            85533

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=95.85  E-value=0.028  Score=50.02  Aligned_cols=37  Identities=19%  Similarity=0.518  Sum_probs=32.8

Q ss_pred             cCCCceEEEEec-Ch--HHHHHHHHHhhCCCEEEEECCCC
Q 020073          158 KLGGKRVGIVGL-GN--IGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~--IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      ++.||++.|.|. |.  ||+++|+.|...|++|++.+|+.
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   43 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE   43 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence            578999999996 45  99999999999999999888764

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.80  E-value=0.01  Score=54.39  Aligned_cols=36  Identities=36%  Similarity=0.423  Sum_probs=32.0

Q ss_pred             CCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          160 GGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .|++|.|.|. |.||+.+++.|...|++|++.+|+..
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   38 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSG   38 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            5789999996 99999999999999999999998754

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=95.79  E-value=0.017  Score=54.31  Aligned_cols=61  Identities=21%  Similarity=0.228  Sum_probs=41.4

Q ss_pred             ceEEEEecChHHHHHHHHHhhC-CCEEEE-ECCCCCC-------CCccccC-----------------CHHhhhcCCCEE
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF-GCNVLY-NSRSKKP-------VPYAFYS-----------------NVCELAANSDAL  215 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~~-~~~~~~~-------~~~~~~~-----------------~l~ell~~aDiV  215 (331)
                      .+|||+|+|.||+.+++.+... +++|.+ .+++...       .+...+.                 ++++++.++|+|
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV   81 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence            3799999999999999999754 567754 4554321       1111111                 344556689999


Q ss_pred             EEeccCC
Q 020073          216 IICCALT  222 (331)
Q Consensus       216 ~l~~P~t  222 (331)
                      +.|+|..
T Consensus        82 ~~aTp~~   88 (340)
T 1b7g_O           82 VDTTPNG   88 (340)
T ss_dssp             EECCSTT
T ss_pred             EECCCCc
Confidence            9999865

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=95.78  E-value=0.0087  Score=56.48  Aligned_cols=63  Identities=11%  Similarity=0.161  Sum_probs=47.8

Q ss_pred             CceEEEEecChHHH-HHHHHHhhCCCEEE-EECCCCCC-------CC-ccccCCHHhhhcC--CCEEEEeccCCh
Q 020073          161 GKRVGIVGLGNIGL-QVAKRLQAFGCNVL-YNSRSKKP-------VP-YAFYSNVCELAAN--SDALIICCALTD  223 (331)
Q Consensus       161 g~~vgIiG~G~IG~-~~A~~l~~~G~~V~-~~~~~~~~-------~~-~~~~~~l~ell~~--aDiV~l~~P~t~  223 (331)
                      -.+|||||+|.+|. .++..++.-|++++ ++|+++..       .+ ...+.++++++.+  .|+|++++|...
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~  100 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSE  100 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHH
Confidence            35899999999995 56777777789865 67776543       22 3456899999976  899999998543

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.78  E-value=0.024  Score=53.37  Aligned_cols=84  Identities=17%  Similarity=0.279  Sum_probs=57.6

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC------CCcc----cc---CCHHhhhc-----CCCEEEEecc
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP------VPYA----FY---SNVCELAA-----NSDALIICCA  220 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~------~~~~----~~---~~l~ell~-----~aDiV~l~~P  220 (331)
                      .|.+|.|+|.|.||...++.++.+|. +|++.+++.++      .+..    ..   .++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g  270 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  270 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            47899999999999999999999999 89999877654      1211    11   12333222     4788888765


Q ss_pred             CChhhhhhccHHHHhcCCCC-cEEEEcCC
Q 020073          221 LTDQTRRMINREVMLALGKE-GIIVNVGR  248 (331)
Q Consensus       221 ~t~~t~~li~~~~l~~mk~g-a~lIn~sr  248 (331)
                      ..+.    + ...++.++++ ..+|.++-
T Consensus       271 ~~~~----~-~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          271 RIET----M-MNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             CHHH----H-HHHHHTBCTTTCEEEECCC
T ss_pred             CHHH----H-HHHHHHHhcCCCEEEEEcc
Confidence            3221    1 3456778888 88887763

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.77  E-value=0.023  Score=53.61  Aligned_cols=83  Identities=22%  Similarity=0.271  Sum_probs=54.6

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC------CCcc----cc---CCHHhhhc-----CCCEEEEecc
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP------VPYA----FY---SNVCELAA-----NSDALIICCA  220 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~------~~~~----~~---~~l~ell~-----~aDiV~l~~P  220 (331)
                      .|.+|.|+|.|.+|..+++.++.+|+ +|++.++++++      .+..    ..   .++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  270 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  270 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence            47899999999999999999999999 89999877654      1111    00   12333222     4677777765


Q ss_pred             CChhhhhhccHHHHhcCCCC-cEEEEcC
Q 020073          221 LTDQTRRMINREVMLALGKE-GIIVNVG  247 (331)
Q Consensus       221 ~t~~t~~li~~~~l~~mk~g-a~lIn~s  247 (331)
                      ..+.    + ...++.++++ ..+|.++
T Consensus       271 ~~~~----~-~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          271 RLDT----M-VTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             CHHH----H-HHHHHHBCTTTCEEEECS
T ss_pred             CHHH----H-HHHHHHhhcCCcEEEEec
Confidence            3211    1 3345567777 7777665

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=95.77  E-value=0.017  Score=55.21  Aligned_cols=89  Identities=21%  Similarity=0.249  Sum_probs=57.9

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC------CCcc---c--cCCHHh----hh--cCCCEEEEeccC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP------VPYA---F--YSNVCE----LA--ANSDALIICCAL  221 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~------~~~~---~--~~~l~e----ll--~~aDiV~l~~P~  221 (331)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++      .+..   .  ..++.+    +.  ...|+|+-++..
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~  292 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGV  292 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCC
Confidence            57899999999999999999999999 89999876543      1111   0  122322    22  248999988764


Q ss_pred             ChhhhhhccHHHHhcCCCCcEEEEcCC
Q 020073          222 TDQTRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       222 t~~t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      ...+...+.......++++..++.++-
T Consensus       293 ~~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          293 PQLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             HHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             cHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            422222221111233388888888864

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=95.76  E-value=0.043  Score=51.31  Aligned_cols=91  Identities=15%  Similarity=0.214  Sum_probs=66.6

Q ss_pred             ccCCCceEEEEecC--hHHHHHHHHHhhCCCEEEEECCCCC---CC----------------C--ccccCCHHhhhcCCC
Q 020073          157 SKLGGKRVGIVGLG--NIGLQVAKRLQAFGCNVLYNSRSKK---PV----------------P--YAFYSNVCELAANSD  213 (331)
Q Consensus       157 ~~l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~---~~----------------~--~~~~~~l~ell~~aD  213 (331)
                      ..+.|.+|++||=|  ++.++++..+..+|++|.+..+..-   +.                +  .....+++++++++|
T Consensus       157 ~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aD  236 (328)
T 3grf_A          157 NGFKGIKFAYCGDSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVD  236 (328)
T ss_dssp             TTGGGCCEEEESCCSSHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCS
T ss_pred             cccCCcEEEEeCCCCcchHHHHHHHHHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCC
Confidence            35889999999965  8999999999999999998876421   10                1  123468999999999


Q ss_pred             EEEEe----ccCCh---------hhhhhccHHHHhcCCCCcEEEEcC
Q 020073          214 ALIIC----CALTD---------QTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       214 iV~l~----~P~t~---------~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      +|..-    +....         -...-++.+.++++|++++|.-+.
T Consensus       237 vvytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~l  283 (328)
T 3grf_A          237 VVYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCL  283 (328)
T ss_dssp             EEEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             EEEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCC
Confidence            99863    22011         012447999999999999998774

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.75  E-value=0.0097  Score=57.96  Aligned_cols=109  Identities=17%  Similarity=0.145  Sum_probs=73.5

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC--C--------CCcccc--CCHHhhhcC-CCEEEEec--cC-
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK--P--------VPYAFY--SNVCELAAN-SDALIICC--AL-  221 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~--~--------~~~~~~--~~l~ell~~-aDiV~l~~--P~-  221 (331)
                      ++.|++|.|||+|..|.++|+.|+..|++|.++|....  .        .+....  ...++++.+ +|+|++.-  |. 
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~   85 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYN   85 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTT
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCC
Confidence            47899999999999999999999999999999998542  1        122111  123346666 89988863  32 


Q ss_pred             Chhhh-------hhccH-HHHhc-CCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 020073          222 TDQTR-------RMINR-EVMLA-LGKEGIIVNVGRGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       222 t~~t~-------~li~~-~~l~~-mk~ga~lIn~srg~~vd~~al~~aL~~~~i  266 (331)
                      +|+..       .++++ +.+.+ ++...+-|.-+.|+.-...-+...|+....
T Consensus        86 ~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~  139 (451)
T 3lk7_A           86 NPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQ  139 (451)
T ss_dssp             SHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred             ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence            22211       13443 33333 344456777788998888888888886543

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=95.75  E-value=0.0079  Score=57.99  Aligned_cols=64  Identities=22%  Similarity=0.240  Sum_probs=47.8

Q ss_pred             CceEEEEecCh---HHHHHHHHHhhCC-CEEE--EECCCCCC-------CCc---cccCCHHhhhcC-------CCEEEE
Q 020073          161 GKRVGIVGLGN---IGLQVAKRLQAFG-CNVL--YNSRSKKP-------VPY---AFYSNVCELAAN-------SDALII  217 (331)
Q Consensus       161 g~~vgIiG~G~---IG~~~A~~l~~~G-~~V~--~~~~~~~~-------~~~---~~~~~l~ell~~-------aDiV~l  217 (331)
                      -.+|||||+|.   ||+..+..++..+ ++++  ++++++..       .+.   ..+.++++++..       .|+|++
T Consensus        37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I  116 (417)
T 3v5n_A           37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAI  116 (417)
T ss_dssp             CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEE
T ss_pred             cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEE
Confidence            35899999999   9999988887665 6765  46776543       122   356799999876       999999


Q ss_pred             eccCChh
Q 020073          218 CCALTDQ  224 (331)
Q Consensus       218 ~~P~t~~  224 (331)
                      ++|....
T Consensus       117 ~tp~~~H  123 (417)
T 3v5n_A          117 VTPNHVH  123 (417)
T ss_dssp             CSCTTSH
T ss_pred             CCCcHHH
Confidence            9996643

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.75  E-value=0.012  Score=51.68  Aligned_cols=91  Identities=15%  Similarity=0.158  Sum_probs=59.0

Q ss_pred             CCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC-C--------ccccCCHHhhh---------cCCCEEEEecc
Q 020073          160 GGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV-P--------YAFYSNVCELA---------ANSDALIICCA  220 (331)
Q Consensus       160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-~--------~~~~~~l~ell---------~~aDiV~l~~P  220 (331)
                      .||++.|.| .|.||+++|+.|...|++|++.+|+.... .        .....++++++         ...|+|+.+.-
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag   81 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAG   81 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccccccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEEEECCc
Confidence            578999998 68999999999999999999998876541 1        11112233333         36899988764


Q ss_pred             CC-------hhh----hhh----------ccHHHHhcCCCCcEEEEcCCCC
Q 020073          221 LT-------DQT----RRM----------INREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       221 ~t-------~~t----~~l----------i~~~~l~~mk~ga~lIn~srg~  250 (331)
                      ..       ..+    ...          +.+..+..|+++..+||+|...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  132 (236)
T 1ooe_A           82 GWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAA  132 (236)
T ss_dssp             CCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             ccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchh
Confidence            21       111    111          1244556676677899998753

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=95.75  E-value=0.026  Score=50.97  Aligned_cols=61  Identities=23%  Similarity=0.255  Sum_probs=44.9

Q ss_pred             CceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC---------------CCc-------cccCCHHhhhcCCCEEEE
Q 020073          161 GKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP---------------VPY-------AFYSNVCELAANSDALII  217 (331)
Q Consensus       161 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~---------------~~~-------~~~~~l~ell~~aDiV~l  217 (331)
                      +++|.|.|. |.||+.+++.|...|.+|++.+|+...               .+.       ....++.++++.+|+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            478999995 999999999999999999998886421               011       111346677788888887


Q ss_pred             eccC
Q 020073          218 CCAL  221 (331)
Q Consensus       218 ~~P~  221 (331)
                      +.+.
T Consensus        84 ~a~~   87 (308)
T 1qyc_A           84 TVGS   87 (308)
T ss_dssp             CCCG
T ss_pred             CCcc
Confidence            7653

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.73  E-value=0.025  Score=55.24  Aligned_cols=91  Identities=16%  Similarity=0.304  Sum_probs=66.8

Q ss_pred             CccCCCceEEEEecC----------hHHHHHHHHHhhCCCEEEEECCCCCC-----CC--ccccCCHHhhhcCCCEEEEe
Q 020073          156 GSKLGGKRVGIVGLG----------NIGLQVAKRLQAFGCNVLYNSRSKKP-----VP--YAFYSNVCELAANSDALIIC  218 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~--~~~~~~l~ell~~aDiV~l~  218 (331)
                      +..+.|++|+|+|+-          +-...+++.|...|.+|.+||+...+     .+  .....++.++++.+|.|+++
T Consensus       313 ~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~  392 (450)
T 3gg2_A          313 KGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHV  392 (450)
T ss_dssp             TTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEEC
T ss_pred             cccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEc
Confidence            345799999999984          45789999999999999999997632     11  23346788999999999999


Q ss_pred             ccCChhhhhhccHHHH-hcCCCCcEEEEcCCCC
Q 020073          219 CALTDQTRRMINREVM-LALGKEGIIVNVGRGA  250 (331)
Q Consensus       219 ~P~t~~t~~li~~~~l-~~mk~ga~lIn~srg~  250 (331)
                      ++.. +.+. ++-+.+ +.|+ +.+++|+ |+-
T Consensus       393 t~~~-~f~~-~~~~~~~~~~~-~~~i~D~-r~~  421 (450)
T 3gg2_A          393 TEWK-EFRM-PDWSALSQAMA-ASLVIDG-RNV  421 (450)
T ss_dssp             SCCG-GGSS-CCHHHHHHHSS-SCEEEES-SCC
T ss_pred             cCCH-HHhh-cCHHHHHHhcC-CCEEEEC-CCC
Confidence            8754 3333 354444 4465 5688995 654

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=95.73  E-value=0.016  Score=57.20  Aligned_cols=61  Identities=21%  Similarity=0.221  Sum_probs=47.8

Q ss_pred             CceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCc---cccCCHHhhhcCCCEEEEeccC
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPY---AFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~---~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      +++|.|.| .|.||+.+++.|...|.+|++.+|+......   .....+.+++.++|+|+.+...
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~~d~~~~~~~~l~~~D~Vih~A~~  211 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDPLNPASDLLDGADVLVHLAGE  211 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECCTTSCCTTTTTTCSEEEECCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccceeecccchhHHhcCCCCEEEECCCC
Confidence            68999999 7999999999999999999999988654111   1123456778899999887643

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=95.72  E-value=0.005  Score=58.72  Aligned_cols=61  Identities=18%  Similarity=0.207  Sum_probs=46.9

Q ss_pred             CceEEEEecChHHHHHHHHHhhC--CCEEE-EECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAF--GCNVL-YNSRSKKP-------VPYAFYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~--G~~V~-~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      -.+|||||+| +|+.-++.++..  +++++ +++++.+.       .+...+.++++++.+.|+|++++|..
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~   77 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRST   77 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCc
Confidence            3589999999 799888877665  57776 56777654       34455789999999999999999864

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=95.72  E-value=0.0054  Score=57.66  Aligned_cols=62  Identities=10%  Similarity=0.186  Sum_probs=45.2

Q ss_pred             ceEEEEecChHHHHHHHHHhhC--------CCEEE-EECCCCCC-------CCc-cccCCHHhhhcC--CCEEEEeccCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF--------GCNVL-YNSRSKKP-------VPY-AFYSNVCELAAN--SDALIICCALT  222 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~--------G~~V~-~~~~~~~~-------~~~-~~~~~l~ell~~--aDiV~l~~P~t  222 (331)
                      -+|||||+|.||+..++.++..        +++|. ++|++++.       .+. ..+.++++++++  .|+|++|+|..
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~   86 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGD   86 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGG
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence            4899999999999888877542        23554 56776543       122 346789999864  79999999865


Q ss_pred             h
Q 020073          223 D  223 (331)
Q Consensus       223 ~  223 (331)
                      -
T Consensus        87 ~   87 (390)
T 4h3v_A           87 S   87 (390)
T ss_dssp             G
T ss_pred             H
Confidence            4

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=95.71  E-value=0.011  Score=52.52  Aligned_cols=92  Identities=16%  Similarity=0.193  Sum_probs=58.9

Q ss_pred             CCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCC-------ccccCCHHhhhc-------CCCEEEEeccC--
Q 020073          159 LGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVP-------YAFYSNVCELAA-------NSDALIICCAL--  221 (331)
Q Consensus       159 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~-------~~~~~~l~ell~-------~aDiV~l~~P~--  221 (331)
                      -.||++.|.| .|.||+++|+.|...|++|++.+|+.....       .....+++++++       .-|+|+.+.-.  
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~Ag~~~   99 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWS   99 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSSEEEECSCSSHHHHHHHHHHHHTTTCCEEEEEECCCCCC
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccceEEEeCCHHHHHHHHHHHHHHcCCCCEEEECCccCC
Confidence            3478999999 578999999999999999999998876511       111123333333       45998887642  


Q ss_pred             -----Chhh----hh----------hccHHHHhcCCCCcEEEEcCCCC
Q 020073          222 -----TDQT----RR----------MINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       222 -----t~~t----~~----------li~~~~l~~mk~ga~lIn~srg~  250 (331)
                           ...+    ..          .+.+..+..|+++..+|++|...
T Consensus       100 ~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  147 (251)
T 3orf_A          100 GGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASA  147 (251)
T ss_dssp             CBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             CCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechh
Confidence                 1111    00          11244556677778899998754

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.71  E-value=0.016  Score=54.22  Aligned_cols=85  Identities=24%  Similarity=0.291  Sum_probs=59.2

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc---cc---CC----HHhhh-----cCCCEEEEe
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA---FY---SN----VCELA-----ANSDALIIC  218 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~---~~---~~----l~ell-----~~aDiV~l~  218 (331)
                      .|++|.|+|.|.+|..+++.++.+|++|++.+++.++      .+..   ..   .+    +.+..     ...|+|+-+
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~  247 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  247 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence            4789999999999999999999999999888876543      1211   01   11    22222     258999988


Q ss_pred             ccCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 020073          219 CALTDQTRRMINREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       219 ~P~t~~t~~li~~~~l~~mk~ga~lIn~srg  249 (331)
                      +.....    + ...++.++++..+|.++.+
T Consensus       248 ~g~~~~----~-~~~~~~l~~~G~iv~~G~~  273 (352)
T 1e3j_A          248 SGNEKC----I-TIGINITRTGGTLMLVGMG  273 (352)
T ss_dssp             SCCHHH----H-HHHHHHSCTTCEEEECSCC
T ss_pred             CCCHHH----H-HHHHHHHhcCCEEEEEecC
Confidence            764322    1 3456778999999988753

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.70  E-value=0.044  Score=49.19  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=33.5

Q ss_pred             ccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCC
Q 020073          157 SKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRS  193 (331)
Q Consensus       157 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~  193 (331)
                      .++.||++.|.| .|.||+++|+.|...|++|++.+++
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~   43 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC   43 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence            468999999999 5789999999999999999998876

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.70  E-value=0.032  Score=52.57  Aligned_cols=84  Identities=15%  Similarity=0.216  Sum_probs=55.7

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC------CCcc----cc---CCHHhhhc-----CCCEEEEecc
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP------VPYA----FY---SNVCELAA-----NSDALIICCA  220 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~------~~~~----~~---~~l~ell~-----~aDiV~l~~P  220 (331)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.++++++      .+..    ..   .++.+.+.     ..|+|+-++.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G  274 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  274 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence            47899999999999999999999999 89999877654      1211    00   12333221     4687777764


Q ss_pred             CChhhhhhccHHHHhcCCCC-cEEEEcCC
Q 020073          221 LTDQTRRMINREVMLALGKE-GIIVNVGR  248 (331)
Q Consensus       221 ~t~~t~~li~~~~l~~mk~g-a~lIn~sr  248 (331)
                      ..+.    + ...++.++++ ..++.++-
T Consensus       275 ~~~~----~-~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          275 TAQT----L-KAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             CHHH----H-HHHHHTBCTTTCEEEECCC
T ss_pred             CHHH----H-HHHHHHhhcCCCEEEEECC
Confidence            3211    1 3445667777 77777653

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=95.70  E-value=0.016  Score=52.14  Aligned_cols=61  Identities=13%  Similarity=0.150  Sum_probs=46.4

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhC-CCEEEEECCCCCCC------Cc-------cccCCHHhhhcCCCEEEEeccCC
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAF-GCNVLYNSRSKKPV------PY-------AFYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~~~~~~~~------~~-------~~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      ++|.|.| .|.||+.+++.|... |.+|++.+|++...      +.       ....++.++++.+|+|+.+....
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~   76 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSII   76 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCC
Confidence            3689999 699999999999987 99999998875431      11       11235778899999999887643

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=95.69  E-value=0.0086  Score=56.21  Aligned_cols=91  Identities=15%  Similarity=0.097  Sum_probs=58.8

Q ss_pred             CCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC---------Cc--------cccCCHHhhhcCCCEEEEeccC
Q 020073          160 GGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV---------PY--------AFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~---------~~--------~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      .+++|.|.| .|.||+.+++.|...|++|++.+|+....         ..        ....++.++++.+|+|+.++..
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~   83 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   83 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence            367899999 59999999999998999999988865421         11        1112366788999999977643


Q ss_pred             ChhhhhhccHHHHhcCC-CC--cEEEEcCCCC
Q 020073          222 TDQTRRMINREVMLALG-KE--GIIVNVGRGA  250 (331)
Q Consensus       222 t~~t~~li~~~~l~~mk-~g--a~lIn~srg~  250 (331)
                      ............++.++ .|  ..||++|...
T Consensus        84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            21111112233444332 23  4788887764

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=95.67  E-value=0.01  Score=57.96  Aligned_cols=62  Identities=10%  Similarity=0.094  Sum_probs=46.2

Q ss_pred             CceEEEEecChH-HHHHHHHHhh----C-CCEEEEECCCC--CC----------------CC--ccccCCHHhhhcCCCE
Q 020073          161 GKRVGIVGLGNI-GLQVAKRLQA----F-GCNVLYNSRSK--KP----------------VP--YAFYSNVCELAANSDA  214 (331)
Q Consensus       161 g~~vgIiG~G~I-G~~~A~~l~~----~-G~~V~~~~~~~--~~----------------~~--~~~~~~l~ell~~aDi  214 (331)
                      ..+|+|||.|.. |.+++..|..    + +.+|..+|+..  +.                ..  .....++.+.++.||+
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~   86 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF   86 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCE
Confidence            358999999999 8887766654    3 55799999977  32                01  1123578899999999


Q ss_pred             EEEeccCC
Q 020073          215 LIICCALT  222 (331)
Q Consensus       215 V~l~~P~t  222 (331)
                      |++++|..
T Consensus        87 VVitagv~   94 (450)
T 1s6y_A           87 VTTQFRVG   94 (450)
T ss_dssp             EEECCCTT
T ss_pred             EEEcCCCC
Confidence            99999853

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.64  E-value=0.017  Score=53.28  Aligned_cols=37  Identities=30%  Similarity=0.413  Sum_probs=32.8

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS  193 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  193 (331)
                      ..|++++|.|||+|.+|..+|+.|...|. ++.++|..
T Consensus        32 ~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D   69 (292)
T 3h8v_A           32 EKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYD   69 (292)
T ss_dssp             CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            46899999999999999999999998887 78877754

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.64  E-value=0.0045  Score=52.86  Aligned_cols=35  Identities=23%  Similarity=0.389  Sum_probs=31.6

Q ss_pred             CCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          160 GGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      .|+++.|+| .|.||+.+++.++..|++|++.+++.
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~   73 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD   73 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence            578999999 69999999999999999999988764

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=95.63  E-value=0.019  Score=53.25  Aligned_cols=92  Identities=13%  Similarity=0.211  Sum_probs=59.6

Q ss_pred             eEEEEec-ChHHHHHHHHHhhCC--CEEEEECCCCCC-------C---C--ccc---cCCHHhhhcCCCEEEEeccCChh
Q 020073          163 RVGIVGL-GNIGLQVAKRLQAFG--CNVLYNSRSKKP-------V---P--YAF---YSNVCELAANSDALIICCALTDQ  224 (331)
Q Consensus       163 ~vgIiG~-G~IG~~~A~~l~~~G--~~V~~~~~~~~~-------~---~--~~~---~~~l~ell~~aDiV~l~~P~t~~  224 (331)
                      +|+|||. |.+|+.++..|...|  .+|..+|+....       .   .  ...   ..++++++++||+|+++......
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~~   81 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRK   81 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCCC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCCC
Confidence            7999998 999999999998777  589999886521       0   1  111   13578899999999999743211


Q ss_pred             ---hh--------hhcc--HHHHhcCCCCcEEEEcCCCCccCHHH
Q 020073          225 ---TR--------RMIN--REVMLALGKEGIIVNVGRGAVIDENE  256 (331)
Q Consensus       225 ---t~--------~li~--~~~l~~mk~ga~lIn~srg~~vd~~a  256 (331)
                         ++        .++.  .+.+....|.+++|+++  ..+|.-.
T Consensus        82 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~s--NPv~~~~  124 (314)
T 1mld_A           82 PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS--NPVNSTI  124 (314)
T ss_dssp             TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CCcchhH
Confidence               10        1110  11222235788999974  4566544

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.63  E-value=0.025  Score=51.54  Aligned_cols=61  Identities=15%  Similarity=0.177  Sum_probs=45.9

Q ss_pred             CceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCC-CC--------------CCc-------cccCCHHhhhcCCCEEEE
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSK-KP--------------VPY-------AFYSNVCELAANSDALII  217 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~-~~--------------~~~-------~~~~~l~ell~~aDiV~l  217 (331)
                      +++|.|.| .|.||+.+++.|...|++|++.+|+. ..              .+.       ....++.++++.+|+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~   83 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS   83 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            46899999 59999999999999999999998875 10              011       112346778888998888


Q ss_pred             eccC
Q 020073          218 CCAL  221 (331)
Q Consensus       218 ~~P~  221 (331)
                      +...
T Consensus        84 ~a~~   87 (321)
T 3c1o_A           84 ALPF   87 (321)
T ss_dssp             CCCG
T ss_pred             CCCc
Confidence            7653

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.63  E-value=0.028  Score=52.84  Aligned_cols=84  Identities=23%  Similarity=0.284  Sum_probs=56.8

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC------CCcc----cc---CCHHhhhc-----CCCEEEEecc
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP------VPYA----FY---SNVCELAA-----NSDALIICCA  220 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~------~~~~----~~---~~l~ell~-----~aDiV~l~~P  220 (331)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++      .+..    ..   .++.+.+.     ..|+|+-++.
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g  269 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  269 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence            47899999999999999999999999 89999877654      1111    01   12333222     4788887765


Q ss_pred             CChhhhhhccHHHHhcCCCC-cEEEEcCC
Q 020073          221 LTDQTRRMINREVMLALGKE-GIIVNVGR  248 (331)
Q Consensus       221 ~t~~t~~li~~~~l~~mk~g-a~lIn~sr  248 (331)
                      ..+.    + ...++.++++ ..+|.++-
T Consensus       270 ~~~~----~-~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          270 NVKV----M-RAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             CHHH----H-HHHHHTBCTTTCEEEECSC
T ss_pred             cHHH----H-HHHHHhhccCCcEEEEEec
Confidence            3221    1 3456677887 77777763

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=95.63  E-value=0.12  Score=50.20  Aligned_cols=119  Identities=13%  Similarity=0.246  Sum_probs=90.6

Q ss_pred             CcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCC
Q 020073          106 GIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGC  185 (331)
Q Consensus       106 gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~  185 (331)
                      .|+|.|..   -.-+|=.+++.+|+.+|-                    .|++|...++.|.|.|.-|-.+|+.+...|.
T Consensus       187 ~ipvFnDD---~qGTA~V~lAgllnAlki--------------------~gk~l~d~riV~~GAGaAGigia~ll~~~G~  243 (487)
T 3nv9_A          187 DIPVWHDD---QQGTASVTLAGLLNALKL--------------------VKKDIHECRMVFIGAGSSNTTCLRLIVTAGA  243 (487)
T ss_dssp             SSCEEETT---THHHHHHHHHHHHHHHHH--------------------HTCCGGGCCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             cCCccccc---cchHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEECCCHHHHHHHHHHHHcCC
Confidence            79999974   335677788888887663                    2456888999999999999999999999998


Q ss_pred             ---EEEEECCCC----CC--C-C---c------------cccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCC
Q 020073          186 ---NVLYNSRSK----KP--V-P---Y------------AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKE  240 (331)
Q Consensus       186 ---~V~~~~~~~----~~--~-~---~------------~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~g  240 (331)
                         +|+.+|+..    ..  . .   .            ....+|.|+++.+|+++-+- ..  ..+.++++.++.|.+.
T Consensus       244 ~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~adVlIG~S-~~--~pg~ft~e~V~~Ma~~  320 (487)
T 3nv9_A          244 DPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISLS-TP--GPGVVKAEWIKSMGEK  320 (487)
T ss_dssp             CGGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHHTTCSEEEECC-CS--SCCCCCHHHHHTSCSS
T ss_pred             CcccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHHhcCCEEEEec-cc--CCCCCCHHHHHhhcCC
Confidence               799888752    11  1 0   0            01247999999999776542 11  1478999999999999


Q ss_pred             cEEEEcCCCC
Q 020073          241 GIIVNVGRGA  250 (331)
Q Consensus       241 a~lIn~srg~  250 (331)
                      .++.=.|...
T Consensus       321 PIIFaLSNPt  330 (487)
T 3nv9_A          321 PIVFCCANPV  330 (487)
T ss_dssp             CEEEECCSSS
T ss_pred             CEEEECCCCC
Confidence            9999888754

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=95.63  E-value=0.034  Score=50.71  Aligned_cols=60  Identities=22%  Similarity=0.247  Sum_probs=45.0

Q ss_pred             CceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC----------CCcc-------ccCCHHhhhcCCCEEEEecc
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP----------VPYA-------FYSNVCELAANSDALIICCA  220 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~----------~~~~-------~~~~l~ell~~aDiV~l~~P  220 (331)
                      .++|.|.| .|.||+.+++.|...|.+|++.+|+...          .+..       ...++.++++.+|+|+.+.+
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~   88 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA   88 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            35899999 5999999999999999999998887641          0111       11346677888888887765

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=95.62  E-value=0.018  Score=50.37  Aligned_cols=60  Identities=20%  Similarity=0.314  Sum_probs=44.4

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCC--Cc----cccCCHHhhhc----CCCEEEEeccC
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPV--PY----AFYSNVCELAA----NSDALIICCAL  221 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~--~~----~~~~~l~ell~----~aDiV~l~~P~  221 (331)
                      |++.|.|. |.||+.+++.|...|++|++.+|+....  ..    ....+++++++    ..|+|+.+.-.
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~   72 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAGV   72 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECCCC
Confidence            57889985 9999999999999999999999876541  11    11234555554    78999887643

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=95.62  E-value=0.25  Score=45.32  Aligned_cols=63  Identities=19%  Similarity=0.105  Sum_probs=51.2

Q ss_pred             cCCCceEEEEec---ChHHHHHHHHHhhCCCEEEEECCCCCC-C-----CccccCCHHhhhcCCCEEEEeccC
Q 020073          158 KLGGKRVGIVGL---GNIGLQVAKRLQAFGCNVLYNSRSKKP-V-----PYAFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       158 ~l~g~~vgIiG~---G~IG~~~A~~l~~~G~~V~~~~~~~~~-~-----~~~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      .+.|.+|+++|=   +++.++.+..+..+|++|.+..+..-. .     +.....+++++++++|+|.. +-.
T Consensus       143 ~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~~  214 (291)
T 3d6n_B          143 EVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LRL  214 (291)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CCC
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eCc
Confidence            378999999996   899999999999999999988764321 1     23346789999999999998 544

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=95.62  E-value=0.017  Score=50.81  Aligned_cols=92  Identities=15%  Similarity=0.147  Sum_probs=59.3

Q ss_pred             CCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC-C--------ccccCCHHhhh---------cCCCEEEEec
Q 020073          159 LGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV-P--------YAFYSNVCELA---------ANSDALIICC  219 (331)
Q Consensus       159 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-~--------~~~~~~l~ell---------~~aDiV~l~~  219 (331)
                      ..||++.|.| .|.||+++|+.|...|++|++.+|+.... .        .....++++++         ...|+|+.+.
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD~lv~~A   84 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVA   84 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSSEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhccCCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCCEEEEcc
Confidence            5688999999 68999999999999999999998876541 1        11112233333         3689988876


Q ss_pred             cCC-------hhh----hh----------hccHHHHhcCCCCcEEEEcCCCC
Q 020073          220 ALT-------DQT----RR----------MINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       220 P~t-------~~t----~~----------li~~~~l~~mk~ga~lIn~srg~  250 (331)
                      -..       ..+    ..          .+.+..+..|+++..+||+|+..
T Consensus        85 g~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~  136 (241)
T 1dhr_A           85 GGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKA  136 (241)
T ss_dssp             CCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             cccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHH
Confidence            321       100    01          11234456676677899998754

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=95.61  E-value=0.034  Score=51.61  Aligned_cols=90  Identities=14%  Similarity=0.177  Sum_probs=64.7

Q ss_pred             cCCCceEEEEec---ChHHHHHHHHHhhC-CCEEEEECCCCCC-C----------Cc--cccCCHHhhhcCCCEEEEecc
Q 020073          158 KLGGKRVGIVGL---GNIGLQVAKRLQAF-GCNVLYNSRSKKP-V----------PY--AFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       158 ~l~g~~vgIiG~---G~IG~~~A~~l~~~-G~~V~~~~~~~~~-~----------~~--~~~~~l~ell~~aDiV~l~~P  220 (331)
                      .+.|.+|++||=   |++.++++..+..+ |++|.+..+..-. .          +.  ....+++++++++|+|..-.=
T Consensus       151 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~  230 (310)
T 3csu_A          151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV  230 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC-
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCc
Confidence            378999999997   59999999999999 9999988764321 0          21  234689999999999987642


Q ss_pred             CCh----hh------hhhccHHHHhcCCCCcEEEEcC
Q 020073          221 LTD----QT------RRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       221 ~t~----~t------~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      -.+    +.      ..-++++.++++|++++|.-+.
T Consensus       231 q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  267 (310)
T 3csu_A          231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  267 (310)
T ss_dssp             ----------------CCBCGGGGTTCCTTCEEECCS
T ss_pred             cccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCC
Confidence            111    00      2345777888888888877664

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=95.60  E-value=0.16  Score=47.37  Aligned_cols=87  Identities=5%  Similarity=-0.067  Sum_probs=62.1

Q ss_pred             cCCCceEEE-----EecChHHHHHHHHHhhCCCEEEEECCCCCCC------CccccCCHHhhhcCCCEEEEeccCC--h-
Q 020073          158 KLGGKRVGI-----VGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV------PYAFYSNVCELAANSDALIICCALT--D-  223 (331)
Q Consensus       158 ~l~g~~vgI-----iG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~~~~~l~ell~~aDiV~l~~P~t--~-  223 (331)
                      .+. .+|++     +|=+++.++.+..+..+|++|.+..+..-..      ......+++++++++|+|..-.=..  . 
T Consensus       166 ~l~-l~ia~a~~~~vGD~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~w~s~g~~  244 (324)
T 1js1_X          166 RPK-VVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGD  244 (324)
T ss_dssp             SCE-EEEECCCCSSCCCSHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECCCCCCSTT
T ss_pred             Cee-EEEEEEcccccCCcchHHHHHHHHHHCCCEEEEeCCcccCCChhhccceEEECCHHHHhCCCCEEEecCcccCCCc
Confidence            367 89999     9999999999999999999999887754321      2344678999999999998833210  0 


Q ss_pred             --------hhhhhccHHHHhcCCCCcEEEEc
Q 020073          224 --------QTRRMINREVMLALGKEGIIVNV  246 (331)
Q Consensus       224 --------~t~~li~~~~l~~mk~ga~lIn~  246 (331)
                              .....++.+.++++| +++|.-+
T Consensus       245 ~~~~~~~r~~~y~vt~e~l~~a~-~ai~MHc  274 (324)
T 1js1_X          245 NYGQILSTDRNWTVGDRQMAVTN-NAYFMHC  274 (324)
T ss_dssp             CTTCCCCCCTTSSBCHHHHTTSS-SCEEECC
T ss_pred             cccchHHHhcCcccCHHHHHhcC-CcEEECC
Confidence                    012345666666666 6666654

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=95.59  E-value=0.033  Score=52.33  Aligned_cols=37  Identities=22%  Similarity=0.484  Sum_probs=32.8

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS  193 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  193 (331)
                      ..|++++|.|||+|.+|..+|+.|...|. ++.++|..
T Consensus        30 ~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A           30 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             HHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            36899999999999999999999999998 78887753

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=95.58  E-value=0.0097  Score=56.23  Aligned_cols=83  Identities=11%  Similarity=0.160  Sum_probs=52.1

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCC-CEEEEEC--CCCC-C-----CCc----------c--cc--CCHHhhhc-CCCEEE
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFG-CNVLYNS--RSKK-P-----VPY----------A--FY--SNVCELAA-NSDALI  216 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~~--~~~~-~-----~~~----------~--~~--~~l~ell~-~aDiV~  216 (331)
                      .+|+|+| +|.||+.+++.|.... ++|.+..  +... .     .+.          .  ..  .+.+++++ ++|+|+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~   88 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVF   88 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEE
Confidence            5899999 9999999999997653 5776653  2211 1     010          0  01  14455556 899999


Q ss_pred             EeccCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 020073          217 ICCALTDQTRRMINREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       217 l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg  249 (331)
                      +|+|... +..+. ...   ++.|..+|+.+--
T Consensus        89 ~atp~~~-~~~~a-~~~---~~aG~~VId~s~~  116 (354)
T 1ys4_A           89 SALPSDL-AKKFE-PEF---AKEGKLIFSNASA  116 (354)
T ss_dssp             ECCCHHH-HHHHH-HHH---HHTTCEEEECCST
T ss_pred             ECCCchH-HHHHH-HHH---HHCCCEEEECCch
Confidence            9998542 22222 222   3568889988753

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=95.58  E-value=0.053  Score=52.39  Aligned_cols=104  Identities=17%  Similarity=0.226  Sum_probs=71.0

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCCEEE-EECCCC-------CC----------CC-cc-ccCCHHhhh-cCCCE
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YNSRSK-------KP----------VP-YA-FYSNVCELA-ANSDA  214 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~~~~~-------~~----------~~-~~-~~~~l~ell-~~aDi  214 (331)
                      |.++.|+++.|.|+|++|+.+|+.|...|++|+ +.|.+.       -.          .+ .. +..+-++++ ..||+
T Consensus       213 g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~DV  292 (419)
T 3aoe_E          213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAEV  292 (419)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSCSE
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCceE
Confidence            346899999999999999999999999999998 455421       01          00 00 001113333 47999


Q ss_pred             EEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          215 LIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       215 V~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      ++-|.     +.+.|+.+...+++- .+++..+-+.+- .+| .+.|.++.|.
T Consensus       293 liP~A-----~~n~i~~~~A~~l~a-k~V~EgAN~p~t-~~A-~~~L~~~Gi~  337 (419)
T 3aoe_E          293 LVLAA-----REGALDGDRARQVQA-QAVVEVANFGLN-PEA-EAYLLGKGAL  337 (419)
T ss_dssp             EEECS-----CTTCBCHHHHTTCCC-SEEEECSTTCBC-HHH-HHHHHHHTCE
T ss_pred             EEecc-----cccccccchHhhCCc-eEEEECCCCcCC-HHH-HHHHHHCCCE
Confidence            99874     455778888888853 588999998875 444 4566666665

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.57  E-value=0.0069  Score=56.93  Aligned_cols=84  Identities=29%  Similarity=0.331  Sum_probs=59.2

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCcc---ccCC---HHhhhcCCCEEEEeccCChhhh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYA---FYSN---VCELAANSDALIICCALTDQTR  226 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~---~~~~---l~ell~~aDiV~l~~P~t~~t~  226 (331)
                      .|.+|.|+|.|.||...++.++.+|++|++.+++.++       .+..   ...+   +.++....|+|+-++.....  
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~--  257 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHA--  257 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHH--
Confidence            5789999999999999999999999999998877543       1111   1122   23334467988888763321  


Q ss_pred             hhccHHHHhcCCCCcEEEEcCC
Q 020073          227 RMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~sr  248 (331)
                         -...++.++++..++.++-
T Consensus       258 ---~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          258 ---LEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             ---SHHHHTTEEEEEEEEECSC
T ss_pred             ---HHHHHHHhccCCEEEEeCC
Confidence               1345677888888888864

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.57  E-value=0.02  Score=52.73  Aligned_cols=65  Identities=12%  Similarity=0.058  Sum_probs=48.7

Q ss_pred             ccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC-C-------Ccc-------ccCCHHhhhc--CCCEEEEe
Q 020073          157 SKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP-V-------PYA-------FYSNVCELAA--NSDALIIC  218 (331)
Q Consensus       157 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~-~-------~~~-------~~~~l~ell~--~aDiV~l~  218 (331)
                      .++.|++|.|.|. |.||+.+++.|...|++|++.+|+... .       ...       ...+++++++  ..|+|+.+
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~   95 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHS   95 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEEC
Confidence            4688999999996 999999999999999999999885432 1       110       1123566777  89988887


Q ss_pred             ccC
Q 020073          219 CAL  221 (331)
Q Consensus       219 ~P~  221 (331)
                      ...
T Consensus        96 A~~   98 (330)
T 2pzm_A           96 AAA   98 (330)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            753

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=95.57  E-value=0.06  Score=52.02  Aligned_cols=104  Identities=22%  Similarity=0.284  Sum_probs=72.3

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCCEEE-EECCCCC---C--------------CC----c-cccCCHHhhh-cC
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YNSRSKK---P--------------VP----Y-AFYSNVCELA-AN  211 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~~~~~~---~--------------~~----~-~~~~~l~ell-~~  211 (331)
                      |.++.|+||.|-|+|++|+.+|+.|...|.+|+ +.|.+..   +              .+    + ....+-++++ ..
T Consensus       216 g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~~~  295 (424)
T 3k92_A          216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLEKD  295 (424)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHHSC
T ss_pred             CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCccceecc
Confidence            456899999999999999999999999999986 4454310   0              00    0 0112345544 56


Q ss_pred             CCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          212 SDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      ||+++-|.     +.+.|+.+...+++ ..+++..+-+.+- . +..+.|.+..|.
T Consensus       296 ~DIliPcA-----~~n~I~~~~a~~l~-ak~V~EgAN~p~t-~-eA~~iL~~rGI~  343 (424)
T 3k92_A          296 CDILVPAA-----ISNQITAKNAHNIQ-ASIVVERANGPTT-I-DATKILNERGVL  343 (424)
T ss_dssp             CSEEEECS-----CSSCBCTTTGGGCC-CSEEECCSSSCBC-H-HHHHHHHHTTCE
T ss_pred             ccEEeecC-----cccccChhhHhhcC-ceEEEcCCCCCCC-H-HHHHHHHHCCCE
Confidence            99998775     34677777777774 4688888889864 3 345677777775

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.52  E-value=0.026  Score=53.32  Aligned_cols=83  Identities=25%  Similarity=0.319  Sum_probs=54.5

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC------CCccc-------cCCHHhhhc-----CCCEEEEecc
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP------VPYAF-------YSNVCELAA-----NSDALIICCA  220 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~------~~~~~-------~~~l~ell~-----~aDiV~l~~P  220 (331)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++      .+...       ..++.+.+.     ..|+|+-++.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g  272 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG  272 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence            57899999999999999999999999 89999877654      11110       122322221     3677777765


Q ss_pred             CChhhhhhccHHHHhcCCCC-cEEEEcC
Q 020073          221 LTDQTRRMINREVMLALGKE-GIIVNVG  247 (331)
Q Consensus       221 ~t~~t~~li~~~~l~~mk~g-a~lIn~s  247 (331)
                      ..+.    + ...+..+++| ..++.++
T Consensus       273 ~~~~----~-~~~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          273 NVSV----M-RAALECCHKGWGTSVIVG  295 (378)
T ss_dssp             CHHH----H-HHHHHTBCTTTCEEEECS
T ss_pred             CHHH----H-HHHHHHhhccCCEEEEEc
Confidence            3211    1 3345667775 6666665

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=95.52  E-value=0.011  Score=52.83  Aligned_cols=61  Identities=20%  Similarity=0.191  Sum_probs=47.6

Q ss_pred             CCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC----------CccccCCHHhhhcCCCEEEEecc
Q 020073          160 GGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV----------PYAFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------~~~~~~~l~ell~~aDiV~l~~P  220 (331)
                      .+|++.|.| .|.||+.+++.|...|.+|++.+|+....          +.....++.+++++.|+|+.+.-
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag   73 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVAGCDGIVHLGG   73 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHcCCCEEEECCC
Confidence            468899999 79999999999999999999999876541          11112356778899999988753

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.51  E-value=0.012  Score=53.73  Aligned_cols=81  Identities=19%  Similarity=0.242  Sum_probs=52.5

Q ss_pred             CCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC------CCccc---c---CCHHhhhcCCCEEEEeccCChhhh
Q 020073          160 GGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAF---Y---SNVCELAANSDALIICCALTDQTR  226 (331)
Q Consensus       160 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~---~---~~l~ell~~aDiV~l~~P~t~~t~  226 (331)
                      .|++|.|+|. |.+|..+++.++.+|++|++.+++.++      .+...   .   .++.+.+...|+|+. +.. +.  
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~~--  200 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-KE--  200 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-TT--
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-HH--
Confidence            4789999998 999999999999999999999886543      11110   1   112222345677666 543 11  


Q ss_pred             hhccHHHHhcCCCCcEEEEcC
Q 020073          227 RMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~s  247 (331)
                         -...++.++++..++.++
T Consensus       201 ---~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          201 ---VEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             ---HHHHHTTEEEEEEEEEC-
T ss_pred             ---HHHHHHhhccCCEEEEEe
Confidence               134556667777766665

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=95.51  E-value=0.2  Score=46.26  Aligned_cols=88  Identities=18%  Similarity=0.219  Sum_probs=61.1

Q ss_pred             cCCCceEEEEec---ChHHHHHHHHHhhC-CCEEEEECCCCCC-----------CC--ccccCCHHhhhcCCCEEEEecc
Q 020073          158 KLGGKRVGIVGL---GNIGLQVAKRLQAF-GCNVLYNSRSKKP-----------VP--YAFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       158 ~l~g~~vgIiG~---G~IG~~~A~~l~~~-G~~V~~~~~~~~~-----------~~--~~~~~~l~ell~~aDiV~l~~P  220 (331)
                      .+.|.+|++||=   |++..+++..+..+ |++|.+..+..-.           .+  +....+++++++++|+|....-
T Consensus       148 ~l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~~  227 (306)
T 4ekn_B          148 RIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRI  227 (306)
T ss_dssp             CSTTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEECCC
T ss_pred             CcCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeCCc
Confidence            378999999996   58999999999999 9999988764321           11  1235789999999999986431


Q ss_pred             ------CChhh-----hhhccHHHHhcCCCCcEEEEcC
Q 020073          221 ------LTDQT-----RRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       221 ------~t~~t-----~~li~~~~l~~mk~ga~lIn~s  247 (331)
                            ...+-     ..-++.+.+++  ++++|.-+.
T Consensus       228 q~er~~~~~e~~~~~~~y~v~~~~l~~--~~ai~mH~l  263 (306)
T 4ekn_B          228 QKERFPDPNEYEKVKGSYKIKREYVEG--KKFIIMHPL  263 (306)
T ss_dssp             CGGGCCSHHHHHHHHHHHCBCHHHHTT--CCCEEECCS
T ss_pred             ccccCCCHHHHHHhccCcEECHHHHcC--CCCEEECCC
Confidence                  11111     13356767665  666666553

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.50  E-value=0.026  Score=52.51  Aligned_cols=105  Identities=16%  Similarity=0.159  Sum_probs=71.0

Q ss_pred             CceEEEEecChHHHH-HHHHHhhCCCEEEEECCCCCC--------CCcccc--CCHHhhh-cCCCEEEEe--ccC-Chhh
Q 020073          161 GKRVGIVGLGNIGLQ-VAKRLQAFGCNVLYNSRSKKP--------VPYAFY--SNVCELA-ANSDALIIC--CAL-TDQT  225 (331)
Q Consensus       161 g~~vgIiG~G~IG~~-~A~~l~~~G~~V~~~~~~~~~--------~~~~~~--~~l~ell-~~aDiV~l~--~P~-t~~t  225 (331)
                      .+++.|||.|.+|.+ +|+.|+..|++|.++|....+        .+....  .+.+++. .++|+|+..  +|. +|+.
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~   83 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVV   83 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHH
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHH
Confidence            478999999999995 999999999999999986542        122111  2344555 579999886  332 3322


Q ss_pred             h-------hhccH-HHHhc-C-CC-CcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073          226 R-------RMINR-EVMLA-L-GK-EGIIVNVGRGAVIDENEMVRCLVRGE  265 (331)
Q Consensus       226 ~-------~li~~-~~l~~-m-k~-ga~lIn~srg~~vd~~al~~aL~~~~  265 (331)
                      .       .++++ +.+.. + +. ..+-|--+.|+.-...-+...|+...
T Consensus        84 ~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g  134 (326)
T 3eag_A           84 EAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAG  134 (326)
T ss_dssp             HHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence            1       13433 33443 3 32 35778888999988888888888754

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.49  E-value=0.0095  Score=54.42  Aligned_cols=41  Identities=29%  Similarity=0.488  Sum_probs=36.7

Q ss_pred             CCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          154 PLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       154 ~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      +...+++|++|.|||.|.+|...++.|...|++|+++++..
T Consensus         6 pl~~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A            6 QLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             EEEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             eEEEEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            44567999999999999999999999999999999988654

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=95.46  E-value=0.048  Score=52.73  Aligned_cols=104  Identities=19%  Similarity=0.271  Sum_probs=68.6

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCCEEEE-ECCCC-----C--C---------C-Cc------------cccCCH
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY-NSRSK-----K--P---------V-PY------------AFYSNV  205 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~-~~~~~-----~--~---------~-~~------------~~~~~l  205 (331)
                      |.++.|+++.|.|+|++|+.+|+.|..+|++|+. .|.+.     +  .         . +.            ....+.
T Consensus       205 g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~  284 (421)
T 1v9l_A          205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNP  284 (421)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSST
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCc
Confidence            3468999999999999999999999999999984 44421     0  0         0 00            011022


Q ss_pred             Hhhh-cCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          206 CELA-ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       206 ~ell-~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      ++++ ..||+++-|.     +.+.|+.+...+++ -.+++..+-+.+- .+| .+.|.+..|.
T Consensus       285 ~~~~~~~~Dil~P~A-----~~~~I~~~~a~~l~-ak~V~EgAN~p~t-~~a-~~~l~~~Gi~  339 (421)
T 1v9l_A          285 DAIFKLDVDIFVPAA-----IENVIRGDNAGLVK-ARLVVEGANGPTT-PEA-ERILYERGVV  339 (421)
T ss_dssp             TGGGGCCCSEEEECS-----CSSCBCTTTTTTCC-CSEEECCSSSCBC-HHH-HHHHHTTTCE
T ss_pred             hhhhcCCccEEEecC-----cCCccchhhHHHcC-ceEEEecCCCcCC-HHH-HHHHHHCCCE
Confidence            4544 4689888775     34466666666674 3577888878764 443 3567777665

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=95.45  E-value=0.023  Score=50.18  Aligned_cols=91  Identities=21%  Similarity=0.229  Sum_probs=58.5

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC--C----ccccCCHHhhhcCC----CEEEEeccCCh-h--hh-
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV--P----YAFYSNVCELAANS----DALIICCALTD-Q--TR-  226 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~--~----~~~~~~l~ell~~a----DiV~l~~P~t~-~--t~-  226 (331)
                      |++.|.| .|.||+++|+.|...|++|++.+|+....  .    .....++++++++.    |+|+.+.-... .  .. 
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~~~~~~~~~   81 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLGN   81 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCCTTCSSHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhccccccCCCCHHHHHHHHHHhCCCCCEEEECCCCCCCcccHHH
Confidence            5688888 68999999999999999999998876541  1    11123455666554    99998764332 0  00 


Q ss_pred             -------h--hccHHHHhcCCC--CcEEEEcCCCCcc
Q 020073          227 -------R--MINREVMLALGK--EGIIVNVGRGAVI  252 (331)
Q Consensus       227 -------~--li~~~~l~~mk~--ga~lIn~srg~~v  252 (331)
                             +  .+.+..+..|++  +..+||+|.....
T Consensus        82 ~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~  118 (257)
T 1fjh_A           82 VVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASA  118 (257)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGG
T ss_pred             HHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhh
Confidence                   0  112334455533  3688999886554

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=95.41  E-value=0.035  Score=51.03  Aligned_cols=59  Identities=14%  Similarity=0.198  Sum_probs=45.0

Q ss_pred             ceEEEEe-cChHHHHHHHHHh-hCCCEEE-EECCCCCC--------------CCccccCCHHhhhcCCCEEEEecc
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQ-AFGCNVL-YNSRSKKP--------------VPYAFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~-~~G~~V~-~~~~~~~~--------------~~~~~~~~l~ell~~aDiV~l~~P  220 (331)
                      .+|+|+| +|+||+.+++.+. .-++++. +++++...              .++..+.++++++.++|+|+-+.+
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~   97 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ   97 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC
Confidence            5899999 9999999999986 4578865 45775421              123345789999999999997764

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.39  E-value=0.0082  Score=55.87  Aligned_cols=84  Identities=14%  Similarity=0.186  Sum_probs=56.6

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc---c--cCCHHhhh----cCCCEEEEeccCChh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA---F--YSNVCELA----ANSDALIICCALTDQ  224 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~---~--~~~l~ell----~~aDiV~l~~P~t~~  224 (331)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++++      .+..   .  ..++.+.+    ...|+|+.+....+.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~  245 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKA  245 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHH
Confidence            4789999999999999999999999999999876543      1211   0  12332222    257888877643222


Q ss_pred             hhhhccHHHHhcCCCCcEEEEcCC
Q 020073          225 TRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       225 t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      .     ...++.++++..++.++-
T Consensus       246 ~-----~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          246 F-----SQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             H-----HHHHHHEEEEEEEEECSC
T ss_pred             H-----HHHHHHhccCCEEEEeCC
Confidence            1     334566788888877753

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=95.38  E-value=0.044  Score=49.80  Aligned_cols=62  Identities=21%  Similarity=0.202  Sum_probs=47.3

Q ss_pred             CCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhc--CCCEEEEeccCC
Q 020073          160 GGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAA--NSDALIICCALT  222 (331)
Q Consensus       160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~~P~t  222 (331)
                      .+++|.|.| .|.||+.+++.|...|.+|++.+++... +.....++.++++  ..|+|+.+....
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-D~~d~~~~~~~~~~~~~d~vih~a~~~   66 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDEL-NLLDSRAVHDFFASERIDQVYLAAAKV   66 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTC-CTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccC-CccCHHHHHHHHHhcCCCEEEEcCeec
Confidence            357899999 6999999999999999999988775421 2222345777887  899998877543

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=95.38  E-value=0.04  Score=51.35  Aligned_cols=60  Identities=17%  Similarity=0.167  Sum_probs=45.8

Q ss_pred             CceEEEEec-ChHHHHHHHHHhhCCC-------EEEEECCC----CCC---------C---Cc----cccCCHHhhhcCC
Q 020073          161 GKRVGIVGL-GNIGLQVAKRLQAFGC-------NVLYNSRS----KKP---------V---PY----AFYSNVCELAANS  212 (331)
Q Consensus       161 g~~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~----~~~---------~---~~----~~~~~l~ell~~a  212 (331)
                      .++|+|+|. |.+|+.++..|...|+       +|..+|+.    .+.         .   ..    ....++.++++.|
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a   84 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA   84 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence            358999997 9999999999987775       79999887    211         1   11    1125788999999


Q ss_pred             CEEEEecc
Q 020073          213 DALIICCA  220 (331)
Q Consensus       213 DiV~l~~P  220 (331)
                      |+|+.+..
T Consensus        85 D~Vi~~ag   92 (329)
T 1b8p_A           85 DVALLVGA   92 (329)
T ss_dssp             SEEEECCC
T ss_pred             CEEEEeCC
Confidence            99998864

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.37  E-value=0.043  Score=50.09  Aligned_cols=64  Identities=17%  Similarity=0.153  Sum_probs=48.0

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC---------------C------CccccCCHHhhhcCCCEE
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP---------------V------PYAFYSNVCELAANSDAL  215 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~---------------~------~~~~~~~l~ell~~aDiV  215 (331)
                      .+.|++|.|.|. |.||+.+++.|...|.+|++.+|+...               .      +.....+++++++..|+|
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   87 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV   87 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEE
Confidence            467899999996 999999999999999999998875321               0      001123466777889998


Q ss_pred             EEeccC
Q 020073          216 IICCAL  221 (331)
Q Consensus       216 ~l~~P~  221 (331)
                      +.+...
T Consensus        88 ih~A~~   93 (342)
T 1y1p_A           88 AHIASV   93 (342)
T ss_dssp             EECCCC
T ss_pred             EEeCCC
Confidence            887643

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=95.36  E-value=0.023  Score=53.84  Aligned_cols=136  Identities=13%  Similarity=0.153  Sum_probs=84.0

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhc--CCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLA--LGK  239 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~--mk~  239 (331)
                      .++.|+|.|.+|+++++.++.+|++|+++|..+...      + .+-+..+|-++..-|          .+.+..  +.+
T Consensus       200 ~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~~~------~-~~~fp~a~~v~~~~p----------~~~~~~~~~~~  262 (362)
T 3on5_A          200 ERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQC------E-KHFFPDADEIIVDFP----------ADFLRKFLIRP  262 (362)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGGGG------C-GGGCTTCSEEEESCH----------HHHHHHSCCCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEECCCcccc------c-cccCCCceEEecCCH----------HHHHhhcCCCC
Confidence            579999999999999999999999999998764321      1 122445665554433          112222  567


Q ss_pred             CcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccc----cCCceEEcC---CCCCCcHHHHHHHHHHHH
Q 020073          240 EGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELL----ELDNVVLQP---HRAVFTSECFVDLCELAV  312 (331)
Q Consensus       240 ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~----~~~nvilTP---H~a~~t~~~~~~~~~~~~  312 (331)
                      ++.+|=+.++.-.|...|..+|++ ...+.|+=-...   ....|+    ...+ +-+|   -|++-|.   +.++-.++
T Consensus       263 ~t~vvv~TH~h~~D~~~L~~aL~~-~~~YiG~iGSr~---R~~rl~~~g~~~~r-i~~PIGL~Iga~tP---~EIAvSI~  334 (362)
T 3on5_A          263 DDFVLIMTHHFQKDQEILHFLLEK-ELRYIGILGSKE---RTRRLLQNRKPPDH-LYSPVGLSIDAQGP---EEIAISIV  334 (362)
T ss_dssp             TCEEEECCSCHHHHHHHHHHHSSS-CCSEEEESSCHH---HHHHHHTSCCCCTT-EESSCSCCSCCCSH---HHHHHHHH
T ss_pred             CeEEEEEeCCchhhHHHHHHHhcC-CCCEEEEeCCHH---HHHHHHhcCCcHhh-eECCCCCCCCCCCH---HHHHHHHH
Confidence            778888888888888888888876 444444310000   000011    0122 4455   4777776   45555666


Q ss_pred             HHHHHHHcCC
Q 020073          313 GNLEALFSNQ  322 (331)
Q Consensus       313 ~nl~~~~~g~  322 (331)
                      ..|.+..+|.
T Consensus       335 AEiia~~~~~  344 (362)
T 3on5_A          335 AQLIQLIRSR  344 (362)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHhCC
Confidence            6677766665

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.36  E-value=0.029  Score=52.48  Aligned_cols=85  Identities=22%  Similarity=0.332  Sum_probs=59.2

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC------CCcc---ccC-----CHH-hhh----cCCCEEEEec
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP------VPYA---FYS-----NVC-ELA----ANSDALIICC  219 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~------~~~~---~~~-----~l~-ell----~~aDiV~l~~  219 (331)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++..+      .+..   ...     ++. ++.    ...|+|+-++
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~  250 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  250 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence            47899999999999999999999999 89998876543      2211   111     111 121    3589999887


Q ss_pred             cCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 020073          220 ALTDQTRRMINREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       220 P~t~~t~~li~~~~l~~mk~ga~lIn~srg  249 (331)
                      ......     ...++.++++..++.++-+
T Consensus       251 g~~~~~-----~~~~~~l~~~G~iv~~G~~  275 (356)
T 1pl8_A          251 GAEASI-----QAGIYATRSGGTLVLVGLG  275 (356)
T ss_dssp             CCHHHH-----HHHHHHSCTTCEEEECSCC
T ss_pred             CChHHH-----HHHHHHhcCCCEEEEEecC
Confidence            643221     3456778999999988753

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=95.34  E-value=0.042  Score=54.01  Aligned_cols=100  Identities=19%  Similarity=0.370  Sum_probs=69.0

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C----------------C---ccccCCHHhh-hcC
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V----------------P---YAFYSNVCEL-AAN  211 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~----------------~---~~~~~~l~el-l~~  211 (331)
                      ++.|+||.|-|+|++|+..|+.|...|++|+.++.+...      .                +   .....+  ++ -..
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~~--~il~~~  318 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEG--SILEVD  318 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEECS--CGGGSC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeecc--cccccc
Confidence            589999999999999999999999999998864322110      0                0   001111  32 346


Q ss_pred             CCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          212 SDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      |||++-|.     +.+.|+.+...+++ -.+++-.+-+.+ ..+| .+.|.+..|.
T Consensus       319 ~DIliPcA-----~~n~I~~~na~~l~-akiV~EgAN~p~-T~eA-~~iL~~rGIl  366 (501)
T 3mw9_A          319 CDILIPAA-----SEKQLTKSNAPRVK-AKIIAEGANGPT-TPEA-DKIFLERNIM  366 (501)
T ss_dssp             CSEEEECS-----SSCCBCTTTGGGCC-CSEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             ceEEeecc-----ccCccCHhHHHHcC-ceEEEeCCCCcC-CHHH-HHHHHHCCCE
Confidence            89888764     45678888778886 457888888874 5444 4567776664

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=95.32  E-value=0.03  Score=52.84  Aligned_cols=37  Identities=30%  Similarity=0.442  Sum_probs=32.5

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS  193 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  193 (331)
                      ..|++++|.|||+|.+|..+|+.|...|. ++.++|+.
T Consensus       114 ~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D  151 (353)
T 3h5n_A          114 DKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDND  151 (353)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCC
Confidence            35889999999999999999999998898 78877764

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.29  E-value=0.068  Score=50.42  Aligned_cols=87  Identities=21%  Similarity=0.308  Sum_probs=56.6

Q ss_pred             CCceEEEEe-cChHHHHHHHHHhhCC-CEEEEECCCC--CC-CC-----c---ccc--CCHHhhhcCCCEEEEeccCChh
Q 020073          160 GGKRVGIVG-LGNIGLQVAKRLQAFG-CNVLYNSRSK--KP-VP-----Y---AFY--SNVCELAANSDALIICCALTDQ  224 (331)
Q Consensus       160 ~g~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~~~~~--~~-~~-----~---~~~--~~l~ell~~aDiV~l~~P~t~~  224 (331)
                      +..+||||| .|.+|+++.+.|...- +++.......  .+ ..     .   ...  .+.++++.++|+|++|+|... 
T Consensus        12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~~~-   90 (351)
T 1vkn_A           12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGA-   90 (351)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTH-
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCcHH-
Confidence            456899998 7999999999998653 3665543221  11 00     0   011  134555688999999998653 


Q ss_pred             hhhhccHHHHhcCCCCcEEEEcCCCCccC
Q 020073          225 TRRMINREVMLALGKEGIIVNVGRGAVID  253 (331)
Q Consensus       225 t~~li~~~~l~~mk~ga~lIn~srg~~vd  253 (331)
                           .++....+ .|..+|+.|.--=.+
T Consensus        91 -----s~~~~~~~-~g~~VIDlSsdfRl~  113 (351)
T 1vkn_A           91 -----SYDLVREL-KGVKIIDLGADFRFD  113 (351)
T ss_dssp             -----HHHHHTTC-CSCEEEESSSTTTCS
T ss_pred             -----HHHHHHHh-CCCEEEECChhhhCC
Confidence                 33444555 799999998643333

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=95.29  E-value=0.025  Score=51.52  Aligned_cols=38  Identities=29%  Similarity=0.441  Sum_probs=33.5

Q ss_pred             ccCCCceEEEEec-Ch--HHHHHHHHHhhCCCEEEEECCCC
Q 020073          157 SKLGGKRVGIVGL-GN--IGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       157 ~~l~g~~vgIiG~-G~--IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      ..+.||++.|.|. |.  ||+++|+.|...|++|++.+|+.
T Consensus        27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~   67 (293)
T 3grk_A           27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGD   67 (293)
T ss_dssp             CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSH
T ss_pred             ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3589999999997 45  99999999999999999988874

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=95.27  E-value=0.019  Score=50.08  Aligned_cols=63  Identities=21%  Similarity=0.084  Sum_probs=48.0

Q ss_pred             CCCceEEEEe-cChHHHHHHHHHhhC--CCEEEEECCCCCC-------C-----CccccCCHHhhhcCCCEEEEeccC
Q 020073          159 LGGKRVGIVG-LGNIGLQVAKRLQAF--GCNVLYNSRSKKP-------V-----PYAFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       159 l~g~~vgIiG-~G~IG~~~A~~l~~~--G~~V~~~~~~~~~-------~-----~~~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      ..++++.|.| .|.||+.+++.|...  |++|++.+|++..       .     +.....++.+++++.|+|+.+...
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   79 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA   79 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence            3578999999 699999999999988  8999999886432       0     111123567888999999988753

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.26  E-value=0.02  Score=51.28  Aligned_cols=38  Identities=21%  Similarity=0.386  Sum_probs=33.6

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      ++.||++.|.| .|.||+++|+.|...|++|++.+|+..
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~   41 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER   41 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            47889999999 589999999999999999999988753

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=95.24  E-value=0.05  Score=46.26  Aligned_cols=61  Identities=21%  Similarity=0.183  Sum_probs=44.7

Q ss_pred             CCceEEEEe-cChHHHHHHHHHhhCCC--EEEEECCCCCC--CCc-------cccCCHHhhhcCCCEEEEeccCC
Q 020073          160 GGKRVGIVG-LGNIGLQVAKRLQAFGC--NVLYNSRSKKP--VPY-------AFYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~--~V~~~~~~~~~--~~~-------~~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      .++++.|.| .|.||+.+++.|...|.  +|++.+|+...  ...       ....++.+++  .|+|+.+....
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~--~d~vi~~a~~~   76 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGS--IDTAFCCLGTT   76 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSC--CSEEEECCCCC
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcccCCCceEEeccccCHHHHHHhh--hcEEEECeeec
Confidence            467899999 79999999999999998  99999887653  111       1112344444  89999887654

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=95.19  E-value=0.058  Score=49.07  Aligned_cols=37  Identities=22%  Similarity=0.253  Sum_probs=33.4

Q ss_pred             ccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCC
Q 020073          157 SKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRS  193 (331)
Q Consensus       157 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~  193 (331)
                      .++.||++.|.| .|.||+++|+.|...|++|++.+++
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~   82 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLP   82 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            368999999999 5899999999999999999998876

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=95.18  E-value=0.037  Score=55.23  Aligned_cols=77  Identities=14%  Similarity=0.136  Sum_probs=56.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC---CC------ccccCCHHhh-hcCCCEEEEeccCChhhhhhccH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP---VP------YAFYSNVCEL-AANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~---~~------~~~~~~l~el-l~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      +++.|+|+|.+|+.+|+.|...|.+|++.+.+++.   ..      ......|.++ +.++|.++.+++.+.  .+++-.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~--~ni~~~  426 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDDS--TNIFLT  426 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCHH--HHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCch--HHHHHH
Confidence            78999999999999999999999999999987765   11      1112235553 789999999988653  334434


Q ss_pred             HHHhcCCCC
Q 020073          232 EVMLALGKE  240 (331)
Q Consensus       232 ~~l~~mk~g  240 (331)
                      .....+.+.
T Consensus       427 ~~ak~l~~~  435 (565)
T 4gx0_A          427 LACRHLHSH  435 (565)
T ss_dssp             HHHHHHCSS
T ss_pred             HHHHHHCCC
Confidence            455556665

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.18  E-value=0.018  Score=53.75  Aligned_cols=37  Identities=22%  Similarity=0.390  Sum_probs=33.2

Q ss_pred             CCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          160 GGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       160 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      .|++|.|+|. |.||..+++.++.+|++|++.+++.++
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~  196 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAA  196 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            5889999998 999999999999999999998886543

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=95.18  E-value=0.039  Score=52.12  Aligned_cols=30  Identities=27%  Similarity=0.339  Sum_probs=25.4

Q ss_pred             ceEEEEecChHHHHHHHHHhhC-CCEEEEEC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF-GCNVLYNS  191 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~~~~  191 (331)
                      .+|||+|+|.||+.+.|.|... +++|++.+
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivain   48 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAIN   48 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEec
Confidence            4899999999999999998765 67877654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.17  E-value=0.019  Score=51.36  Aligned_cols=60  Identities=15%  Similarity=0.092  Sum_probs=45.9

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc----ccCCHHhhhcCCCEEEEeccCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA----FYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~----~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      .++|.|.|.|.||+.+++.|...|.+|++.+|+...      .+..    ...+++  +.++|+|+.+....
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~   74 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPD   74 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCcc
Confidence            478999999999999999999999999999987653      1111    112333  78899999887644

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=95.17  E-value=0.022  Score=53.37  Aligned_cols=104  Identities=13%  Similarity=0.135  Sum_probs=62.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhC--------CCEEE-EECCCCCC-CC-c---------------cccC---CHHhhh-cC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF--------GCNVL-YNSRSKKP-VP-Y---------------AFYS---NVCELA-AN  211 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~--------G~~V~-~~~~~~~~-~~-~---------------~~~~---~l~ell-~~  211 (331)
                      .++||||+|.||+.+++.+...        +++|. +++++... .. .               ..+.   ++++++ .+
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~   86 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD   86 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred             EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence            5799999999999999998653        35664 55665432 11 0               0223   788877 46


Q ss_pred             CCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCc-cCHHHHHHHHHhCCc
Q 020073          212 SDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAV-IDENEMVRCLVRGEI  266 (331)
Q Consensus       212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~-vd~~al~~aL~~~~i  266 (331)
                      .|+|+.|+|.. .|...--.-....++.|.-+|...-..+ .+-+.|.++-+++..
T Consensus        87 iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv  141 (331)
T 3c8m_A           87 FDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNR  141 (331)
T ss_dssp             CSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCC
Confidence            89999999975 1111111122334567776665443333 233566666655543

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=95.17  E-value=0.05  Score=53.17  Aligned_cols=105  Identities=18%  Similarity=0.269  Sum_probs=72.5

Q ss_pred             CCCceEEEEecC----hHHHHHHHHHhhCC-CEEEEECCCCCC-CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHH
Q 020073          159 LGGKRVGIVGLG----NIGLQVAKRLQAFG-CNVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINRE  232 (331)
Q Consensus       159 l~g~~vgIiG~G----~IG~~~A~~l~~~G-~~V~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~  232 (331)
                      ++-++|+|||.+    ++|..+.+.++..| ..|+.+++.... .+...+.+++++....|++++++|.. .....+.+ 
T Consensus         6 ~~p~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i~G~~~y~sl~~lp~~~Dlavi~vp~~-~~~~~v~e-   83 (457)
T 2csu_A            6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVVPKR-FVKDTLIQ-   83 (457)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECSCHH-HHHHHHHH-
T ss_pred             cCCCeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeECCEeccCCHHHcCCCCCEEEEecCHH-HHHHHHHH-
Confidence            456789999998    89999999999884 788888887544 45556788999988999999999843 44444432 


Q ss_pred             HHhcCCCCcEEEEcCCC--CccC-----HHHHHHHHHhCCce
Q 020073          233 VMLALGKEGIIVNVGRG--AVID-----ENEMVRCLVRGEIA  267 (331)
Q Consensus       233 ~l~~mk~ga~lIn~srg--~~vd-----~~al~~aL~~~~i~  267 (331)
                      ..+. .-..+ |..+.|  +.=+     ++.+.+..++..+.
T Consensus        84 ~~~~-Gi~~v-v~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~  123 (457)
T 2csu_A           84 CGEK-GVKGV-VIITAGFGETGEEGKREEKELVEIAHKYGMR  123 (457)
T ss_dssp             HHHH-TCCEE-EECCCSSTTSCHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHHc-CCCEE-EEecCCCCccccccHHHHHHHHHHHHHcCCE
Confidence            2222 22233 333433  2223     67788888876665

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=95.17  E-value=0.062  Score=52.49  Aligned_cols=91  Identities=15%  Similarity=0.255  Sum_probs=67.0

Q ss_pred             cCCCceEEEEecC----------hHHHHHHHHHhhCCCEEEEECCCCCCC-------------------CccccCCHHhh
Q 020073          158 KLGGKRVGIVGLG----------NIGLQVAKRLQAFGCNVLYNSRSKKPV-------------------PYAFYSNVCEL  208 (331)
Q Consensus       158 ~l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~~~~~~~~-------------------~~~~~~~l~el  208 (331)
                      .+.|++|+|+|+.          +-...+++.|...|.+|.+||+.....                   ......+..+.
T Consensus       326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (467)
T 2q3e_A          326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEA  405 (467)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHH
T ss_pred             ccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHH
Confidence            4789999999986          478899999999999999999975321                   01123478889


Q ss_pred             hcCCCEEEEeccCChhhhhhccHHHH-hcCCCCcEEEEcCCCCc
Q 020073          209 AANSDALIICCALTDQTRRMINREVM-LALGKEGIIVNVGRGAV  251 (331)
Q Consensus       209 l~~aDiV~l~~P~t~~t~~li~~~~l-~~mk~ga~lIn~srg~~  251 (331)
                      ++.+|+|++++... +.+. ++.+.+ ..|+...+++|+ |+-+
T Consensus       406 ~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~~~~~i~D~-r~~~  446 (467)
T 2q3e_A          406 CDGAHAVVICTEWD-MFKE-LDYERIHKKMLKPAFIFDG-RRVL  446 (467)
T ss_dssp             HTTCSEEEECSCCG-GGGG-SCHHHHHHHSCSSCEEEES-SCTT
T ss_pred             HhCCcEEEEecCCh-hhhc-CCHHHHHHhcCCCCEEEeC-CCcC
Confidence            99999999998764 4443 354444 557776668886 6643

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.16  E-value=0.0096  Score=58.32  Aligned_cols=62  Identities=16%  Similarity=0.218  Sum_probs=47.1

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCcc-------ccCCHHhh-hcCCCEEEEeccCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYA-------FYSNVCEL-AANSDALIICCALT  222 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~-------~~~~l~el-l~~aDiV~l~~P~t  222 (331)
                      .++|.|+|+|.+|+.+|+.|...|.+|++.+..++.       .+..       ....|.++ +++||+++.+++.+
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~D   79 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTD   79 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCCh
Confidence            468999999999999999999999999999987643       1211       11235554 78899988877644

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.16  E-value=0.016  Score=54.79  Aligned_cols=84  Identities=25%  Similarity=0.390  Sum_probs=57.4

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC------CCcc-----ccCCHHhhhc--------CCCEEEEec
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP------VPYA-----FYSNVCELAA--------NSDALIICC  219 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~------~~~~-----~~~~l~ell~--------~aDiV~l~~  219 (331)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++      .+..     ...++.+.+.        ..|+|+-++
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~  261 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA  261 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC
Confidence            47899999999999999999999999 89988876543      1111     0123434333        378888876


Q ss_pred             cCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 020073          220 ALTDQTRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       220 P~t~~t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      .....    + ...+..++++..++.++-
T Consensus       262 G~~~~----~-~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          262 GVAET----V-KQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             CCHHH----H-HHHHHHEEEEEEEEECSC
T ss_pred             CCHHH----H-HHHHHHhccCCEEEEEec
Confidence            43221    1 345566788888888764

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=95.14  E-value=0.011  Score=52.92  Aligned_cols=59  Identities=14%  Similarity=0.187  Sum_probs=43.6

Q ss_pred             eEEEEec-ChHHHHHHHHHhhC--CCEEEEECCCCCCC------Cc-------cccCCHHhhhcCCCEEEEeccC
Q 020073          163 RVGIVGL-GNIGLQVAKRLQAF--GCNVLYNSRSKKPV------PY-------AFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       163 ~vgIiG~-G~IG~~~A~~l~~~--G~~V~~~~~~~~~~------~~-------~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      +|.|.|. |.||+.+++.|...  |++|++.+|++.+.      ..       ....++.++++.+|+|+.+...
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   75 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISSS   75 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC--
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            4788995 99999999999988  99999998875431      11       1123467788999999877643

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=95.13  E-value=0.019  Score=49.87  Aligned_cols=91  Identities=18%  Similarity=0.094  Sum_probs=60.1

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhh---cCCCEEEEeccCC-h---------
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELA---ANSDALIICCALT-D---------  223 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell---~~aDiV~l~~P~t-~---------  223 (331)
                      ++.||++.|.| .|.||+++|+.|...|++|++.+|+..- +.....++++++   ..-|+++.+.-.. +         
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~-D~~~~~~v~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~   81 (223)
T 3uce_A            3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGL-DISDEKSVYHYFETIGAFDHLIVTAGSYAPAGKVVDVEV   81 (223)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTC-CTTCHHHHHHHHHHHCSEEEEEECCCCCCCCSCTTTSCH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCccc-CCCCHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCCH
Confidence            36789999999 5899999999999999999999887542 111122333433   4689988876432 0         


Q ss_pred             h-h--------hh--hccHHHHhcCCCCcEEEEcCCC
Q 020073          224 Q-T--------RR--MINREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       224 ~-t--------~~--li~~~~l~~mk~ga~lIn~srg  249 (331)
                      + .        .+  .+.+..+..|+++..+||+|..
T Consensus        82 ~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~  118 (223)
T 3uce_A           82 TQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGM  118 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred             HHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecch
Confidence            0 0        00  1234455667778889999874

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.11  E-value=0.026  Score=56.91  Aligned_cols=72  Identities=21%  Similarity=0.344  Sum_probs=49.2

Q ss_pred             cEEEeCCCC-ChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCC-ccCCCceEEEEecChHHHHHHHHHhhCC
Q 020073          107 IAVANAGSI-FSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLG-SKLGGKRVGIVGLGNIGLQVAKRLQAFG  184 (331)
Q Consensus       107 I~v~n~~~~-~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~-~~l~g~~vgIiG~G~IG~~~A~~l~~~G  184 (331)
                      -++.+-... .....||.+.-+-|-+.|-          .-|..     .| ..|++++|.|||+|.+|..+|+.|...|
T Consensus       285 ~~~~~l~~~~dp~~la~~~~~Lnlklm~w----------Rllp~-----~g~ekL~~arVLIVGaGGLGs~vA~~La~aG  349 (615)
T 4gsl_A          285 PRVVDLSSLLDPLKIADQSVDLNLKLMKW----------RILPD-----LNLDIIKNTKVLLLGAGTLGCYVSRALIAWG  349 (615)
T ss_dssp             CEEEECHHHHCHHHHHHHHHHHHHHHHHH----------HTCTT-----CCHHHHHTCEEEEECCSHHHHHHHHHHHHTT
T ss_pred             eeEEeccccCCHHHHHhhhhhhhhHHHHH----------hhcch-----hhHHHHhCCeEEEECCCHHHHHHHHHHHHcC
Confidence            344443332 4566777776665543331          22322     22 3589999999999999999999999999


Q ss_pred             C-EEEEECCC
Q 020073          185 C-NVLYNSRS  193 (331)
Q Consensus       185 ~-~V~~~~~~  193 (331)
                      . ++..+|..
T Consensus       350 VG~ItLvD~D  359 (615)
T 4gsl_A          350 VRKITFVDNG  359 (615)
T ss_dssp             CCEEEEECCC
T ss_pred             CCEEEEEcCC
Confidence            8 78888764

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.11  E-value=0.016  Score=53.96  Aligned_cols=84  Identities=24%  Similarity=0.263  Sum_probs=54.4

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC----CC-cc---c--cCCHHhhhc-----CCCEEEEeccCCh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP----VP-YA---F--YSNVCELAA-----NSDALIICCALTD  223 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~----~~-~~---~--~~~l~ell~-----~aDiV~l~~P~t~  223 (331)
                      .|.+|.|+|.|.+|..+++.++.+|+ +|++.+++.++    .. ..   .  ..++.+.+.     ..|+|+-++...+
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~la~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~  243 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNEA  243 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTTCSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhHHhccCcCccCHHHHHHHhcCCCCCEEEECCCCHH
Confidence            68899999999999999999999999 99999876533    00 10   0  012322222     4677777665322


Q ss_pred             hhhhhccHHHHhcCCCCcEEEEcCC
Q 020073          224 QTRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       224 ~t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      ..     ...++.++++..++.++.
T Consensus       244 ~~-----~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          244 AI-----HQGLMALIPGGEARILGI  263 (343)
T ss_dssp             HH-----HHHHHHEEEEEEEEECCC
T ss_pred             HH-----HHHHHHHhcCCEEEEEec
Confidence            11     334555677777777653

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=95.11  E-value=0.016  Score=51.90  Aligned_cols=60  Identities=13%  Similarity=0.140  Sum_probs=45.4

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhC--CCEEEEECCCCCCC------Cc-------cccCCHHhhhcCCCEEEEeccC
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAF--GCNVLYNSRSKKPV------PY-------AFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~--G~~V~~~~~~~~~~------~~-------~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      ++|.|.|. |.||+.+++.|...  |++|++.+|+..+.      ..       ....++.++++++|+|+.+...
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   76 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGP   76 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCC
Confidence            46889995 99999999999988  99999998875431      11       1123467788999999877653

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=95.10  E-value=0.023  Score=51.69  Aligned_cols=59  Identities=20%  Similarity=0.200  Sum_probs=42.9

Q ss_pred             CceEEEEec-ChHHHHHHHHHh-hCCCEEE-EECCCCCC--------------CCccccCCHHhhhcCCCEEEEec
Q 020073          161 GKRVGIVGL-GNIGLQVAKRLQ-AFGCNVL-YNSRSKKP--------------VPYAFYSNVCELAANSDALIICC  219 (331)
Q Consensus       161 g~~vgIiG~-G~IG~~~A~~l~-~~G~~V~-~~~~~~~~--------------~~~~~~~~l~ell~~aDiV~l~~  219 (331)
                      ..+|+|+|+ |.||+.+++.+. .-|+++. ++++....              .+.....++++++.++|+|+-++
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft   80 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT   80 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcC
Confidence            358999998 999999999876 4577876 66765431              01122457888888999999554

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.09  E-value=0.03  Score=51.68  Aligned_cols=63  Identities=17%  Similarity=0.125  Sum_probs=47.9

Q ss_pred             CCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC----------------C--------ccccCCHHhhhcCCC
Q 020073          159 LGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV----------------P--------YAFYSNVCELAANSD  213 (331)
Q Consensus       159 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------------~--------~~~~~~l~ell~~aD  213 (331)
                      +.+++|.|.| .|-||+.+++.|...|.+|++.+|.....                .        .....++.++++.+|
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d  102 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVD  102 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCC
Confidence            5688999999 69999999999999999999998865420                1        011124667888999


Q ss_pred             EEEEeccC
Q 020073          214 ALIICCAL  221 (331)
Q Consensus       214 iV~l~~P~  221 (331)
                      +|+.+...
T Consensus       103 ~Vih~A~~  110 (351)
T 3ruf_A          103 HVLHQAAL  110 (351)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            88877643

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=95.06  E-value=0.024  Score=51.46  Aligned_cols=61  Identities=20%  Similarity=0.254  Sum_probs=40.3

Q ss_pred             CceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcC--CCEEEEeccC
Q 020073          161 GKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAAN--SDALIICCAL  221 (331)
Q Consensus       161 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~--aDiV~l~~P~  221 (331)
                      +++|.|.|. |.||+.+++.|...|++|++.+|+...     .+.....++.++++.  .|+|+.+...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~   70 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAE   70 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------CHHHHHHHCCSEEEECC--
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEecCCCHHHHHHHHHhhCCCEEEECCcc
Confidence            578999996 999999999999999999999876432     111122456667764  8998887643

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.04  E-value=0.038  Score=50.15  Aligned_cols=60  Identities=18%  Similarity=0.288  Sum_probs=46.9

Q ss_pred             CceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC----------CccccCCHHhhhcCCCEEEEeccC
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV----------PYAFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----------~~~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      +++|.|.| .|.||+.+++.|...|.+|++.+|+....          +.. ..++.++++++|+|+.+...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~   72 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYT-LEDLINQLNDVDAVVHLAAT   72 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCC-HHHHHHHTTTCSEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEcccc-HHHHHHhhcCCCEEEEcccc
Confidence            47899999 69999999999999999999999873321          112 34567788999999887654

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=95.04  E-value=0.029  Score=49.80  Aligned_cols=37  Identities=22%  Similarity=0.308  Sum_probs=30.1

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      +++||++.|.| .|.||+++|+.|...|++|++.++..
T Consensus         6 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   43 (257)
T 3tl3_A            6 EIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRG   43 (257)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred             eecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCch
Confidence            58899999999 58999999999999999999988854

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=95.03  E-value=0.016  Score=55.60  Aligned_cols=82  Identities=12%  Similarity=0.167  Sum_probs=54.3

Q ss_pred             ceEEEEecChHHHHHHHHHhhCC---CEEEEECCCCCC-------C------Ccc-------ccCCHHhhhcC--CCEEE
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFG---CNVLYNSRSKKP-------V------PYA-------FYSNVCELAAN--SDALI  216 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G---~~V~~~~~~~~~-------~------~~~-------~~~~l~ell~~--aDiV~  216 (331)
                      ++|+|+|.|.||+.+++.|...|   .+|.+.+|+..+       .      ...       ...++++++++  +|+|+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            58999999999999999999887   389999887543       0      010       12346777777  89999


Q ss_pred             EeccCChhhhhhccHHHHhcCCCCcEEEEcCC
Q 020073          217 ICCALTDQTRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       217 l~~P~t~~t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      .++|.... ..++ ...   ++.|.-+++++-
T Consensus        82 n~ag~~~~-~~v~-~a~---l~~g~~vvD~a~  108 (405)
T 4ina_A           82 NIALPYQD-LTIM-EAC---LRTGVPYLDTAN  108 (405)
T ss_dssp             ECSCGGGH-HHHH-HHH---HHHTCCEEESSC
T ss_pred             ECCCcccC-hHHH-HHH---HHhCCCEEEecC
Confidence            99874321 1222 112   345566676643

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=95.03  E-value=0.075  Score=48.37  Aligned_cols=41  Identities=24%  Similarity=0.270  Sum_probs=35.8

Q ss_pred             CCccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          155 LGSKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       155 ~~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      +..++.||++.|.| .|.||+++|+.|...|++|++.+++..
T Consensus        22 m~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~   63 (299)
T 3t7c_A           22 MAGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQ   63 (299)
T ss_dssp             CCCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSC
T ss_pred             cccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccc
Confidence            44579999999999 578999999999999999999988743

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=95.01  E-value=0.03  Score=50.58  Aligned_cols=60  Identities=22%  Similarity=0.074  Sum_probs=46.6

Q ss_pred             CceEEEEec-ChHHHHHHHHHhhCC-CEEEEECCCCCC--------CCc-------cccCCHHhhhcCCCEEEEecc
Q 020073          161 GKRVGIVGL-GNIGLQVAKRLQAFG-CNVLYNSRSKKP--------VPY-------AFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       161 g~~vgIiG~-G~IG~~~A~~l~~~G-~~V~~~~~~~~~--------~~~-------~~~~~l~ell~~aDiV~l~~P  220 (331)
                      +++|.|.|. |.||+.+++.|...| ++|++.+|++..        .+.       ....++.++++.+|+|+.+.+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            578999996 999999999999888 999999887543        111       112356778999999998764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=95.00  E-value=0.02  Score=53.20  Aligned_cols=83  Identities=19%  Similarity=0.206  Sum_probs=55.8

Q ss_pred             CCceEEEEecC-hHHHHHHHHHhhCCCEEEEECCCCCC------CCcc-----ccCCHHhh----h--cCCCEEEEeccC
Q 020073          160 GGKRVGIVGLG-NIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA-----FYSNVCEL----A--ANSDALIICCAL  221 (331)
Q Consensus       160 ~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~-----~~~~l~el----l--~~aDiV~l~~P~  221 (331)
                      .|++|.|+|.| .||..+++.++..|++|++.+++.++      .+..     ...++.+.    .  ...|+|+.++..
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  223 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGG  223 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCC
Confidence            57899999998 99999999999999999999887665      1111     01222222    1  247888777642


Q ss_pred             ChhhhhhccHHHHhcCCCCcEEEEcCC
Q 020073          222 TDQTRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       222 t~~t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      . .+     ...+..++++..++.++-
T Consensus       224 ~-~~-----~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          224 P-DG-----NELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             H-HH-----HHHHHTEEEEEEEEECCC
T ss_pred             h-hH-----HHHHHHhcCCCEEEEEee
Confidence            2 22     223466788888888764

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=94.99  E-value=0.024  Score=52.82  Aligned_cols=63  Identities=21%  Similarity=0.190  Sum_probs=47.1

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhC-CCEEEEECCCCCCC-------Cc-------c-ccCCHHhhhcCCCEEEEecc
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAF-GCNVLYNSRSKKPV-------PY-------A-FYSNVCELAANSDALIICCA  220 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~~~~~~~~-------~~-------~-~~~~l~ell~~aDiV~l~~P  220 (331)
                      .+.+++|.|.| .|.||+.+++.|... |++|++.+|+....       ..       . ...++.++++++|+|+.+..
T Consensus        21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~  100 (372)
T 3slg_A           21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVA  100 (372)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCc
Confidence            46789999999 699999999999887 99999999876541       11       1 11235667889999987654

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=94.98  E-value=0.032  Score=53.45  Aligned_cols=62  Identities=18%  Similarity=0.293  Sum_probs=45.1

Q ss_pred             CCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CC--cc---cc---CCHHhhhcCCCEEEE
Q 020073          155 LGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VP--YA---FY---SNVCELAANSDALII  217 (331)
Q Consensus       155 ~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~--~~---~~---~~l~ell~~aDiV~l  217 (331)
                      ++..+.+++|+|+|-|..|+.+++.++.+|.+|++++ ++..     ..  ..   .+   ..+.++++++|+|+.
T Consensus        18 ~~~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~   92 (403)
T 3k5i_A           18 QGHMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTA   92 (403)
T ss_dssp             ---CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEE
T ss_pred             eccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEE
Confidence            3445678999999999999999999999999998888 5432     11  11   11   236677889998874

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=94.98  E-value=0.084  Score=47.46  Aligned_cols=38  Identities=29%  Similarity=0.482  Sum_probs=33.7

Q ss_pred             ccCCCceEEEEec-Ch--HHHHHHHHHhhCCCEEEEECCCC
Q 020073          157 SKLGGKRVGIVGL-GN--IGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       157 ~~l~g~~vgIiG~-G~--IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      ..+.||++.|.|. |.  ||+++|+.|...|++|++.+|+.
T Consensus        22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           22 GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             cccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            4689999999995 44  99999999999999999998875

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=94.97  E-value=0.023  Score=53.34  Aligned_cols=30  Identities=30%  Similarity=0.365  Sum_probs=24.4

Q ss_pred             ceEEEEecChHHHHHHHHHhhC---CCEEEEEC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF---GCNVLYNS  191 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~---G~~V~~~~  191 (331)
                      .+|||+|+|.||+.+.|.|...   .++|.+.+
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain   33 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAIN   33 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence            3799999999999999998654   57877553

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=94.94  E-value=0.045  Score=51.66  Aligned_cols=62  Identities=13%  Similarity=0.197  Sum_probs=45.1

Q ss_pred             ceEEEEe-cChHHHH-HH----HHHhhCC-CEE----------EEECCCCCC-------CCc-cccCCHHhhhcC--CCE
Q 020073          162 KRVGIVG-LGNIGLQ-VA----KRLQAFG-CNV----------LYNSRSKKP-------VPY-AFYSNVCELAAN--SDA  214 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~-~A----~~l~~~G-~~V----------~~~~~~~~~-------~~~-~~~~~l~ell~~--aDi  214 (331)
                      .+||||| +|.||+. .+    +.++..+ ..+          .+++++++.       .+. ..+.++++++.+  .|+
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~   86 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM   86 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence            4799999 9999998 66    6666443 232          378887654       233 246799999976  899


Q ss_pred             EEEeccCCh
Q 020073          215 LIICCALTD  223 (331)
Q Consensus       215 V~l~~P~t~  223 (331)
                      |++++|...
T Consensus        87 V~i~tp~~~   95 (383)
T 3oqb_A           87 FFDAATTQA   95 (383)
T ss_dssp             EEECSCSSS
T ss_pred             EEECCCchH
Confidence            999998653

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.94  E-value=0.079  Score=52.03  Aligned_cols=94  Identities=16%  Similarity=0.231  Sum_probs=68.1

Q ss_pred             ccCCCceEEEEecC----------hHHHHHHHHHhhCCCEEEEECCCCCC-----CC------------ccccCCHHhhh
Q 020073          157 SKLGGKRVGIVGLG----------NIGLQVAKRLQAFGCNVLYNSRSKKP-----VP------------YAFYSNVCELA  209 (331)
Q Consensus       157 ~~l~g~~vgIiG~G----------~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~------------~~~~~~l~ell  209 (331)
                      .++.|++|+|+|+-          +-...+++.|...|.+|.+||+....     .+            .....++.+.+
T Consensus       324 ~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (478)
T 2y0c_A          324 EDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQAA  403 (478)
T ss_dssp             SCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHTTTCHHHHTTEEECSSHHHHT
T ss_pred             ccCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCccHHHHHhhccccccccccccceeecCCHHHHH
Confidence            35789999999974          46789999999999999999997532     01            22345788899


Q ss_pred             cCCCEEEEeccCChhhhhhccHHHH-hcCCCCcEEEEcCCCCccCHH
Q 020073          210 ANSDALIICCALTDQTRRMINREVM-LALGKEGIIVNVGRGAVIDEN  255 (331)
Q Consensus       210 ~~aDiV~l~~P~t~~t~~li~~~~l-~~mk~ga~lIn~srg~~vd~~  255 (331)
                      +.+|+|++++... +.+. ++.+.+ +.|+ +.+++|+ |+- +|.+
T Consensus       404 ~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~-~~~i~D~-r~~-~~~~  445 (478)
T 2y0c_A          404 RDADALVIVTEWK-IFKS-PDFVALGRLWK-TPVIFDG-RNL-YEPE  445 (478)
T ss_dssp             TTCSEEEECSCCG-GGGS-CCHHHHHTTCS-SCEEEES-SCC-SCHH
T ss_pred             hCCCEEEEecCCh-Hhhc-cCHHHHHhhcC-CCEEEEC-CCC-CCHH
Confidence            9999999998765 3333 355544 4455 4788987 554 4554

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=94.93  E-value=0.04  Score=53.88  Aligned_cols=34  Identities=21%  Similarity=0.330  Sum_probs=31.3

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCCEEEE
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY  189 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~  189 (331)
                      |.++.|++|.|-|+|++|+.+|+.|...|.+|+.
T Consensus       247 G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVa  280 (470)
T 2bma_A          247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLT  280 (470)
T ss_dssp             TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECE
T ss_pred             cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence            4568999999999999999999999999999883

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.91  E-value=0.019  Score=53.95  Aligned_cols=36  Identities=31%  Similarity=0.446  Sum_probs=32.7

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .|.+|.|+|.|.||...++.++.+|++|++.+++.+
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~  224 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSRE  224 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCch
Confidence            578999999999999999999999999999887643

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=94.90  E-value=0.017  Score=54.30  Aligned_cols=62  Identities=21%  Similarity=0.276  Sum_probs=42.8

Q ss_pred             ceEEEEecChHHHHHHHHHhh-CCCEEEEE-CCCCCC-------CC--c-------c-cc--------CCHHhhhcCCCE
Q 020073          162 KRVGIVGLGNIGLQVAKRLQA-FGCNVLYN-SRSKKP-------VP--Y-------A-FY--------SNVCELAANSDA  214 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~-~G~~V~~~-~~~~~~-------~~--~-------~-~~--------~~l~ell~~aDi  214 (331)
                      .+|||+|+|.||+.+++.+.. -++++.+. ++.+..       .+  .       . .+        .+.++++.++|+
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv   81 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence            479999999999999999876 56787654 443221       10  0       0 00        145677789999


Q ss_pred             EEEeccCCh
Q 020073          215 LIICCALTD  223 (331)
Q Consensus       215 V~l~~P~t~  223 (331)
                      |+.|+|...
T Consensus        82 V~~atp~~~   90 (337)
T 1cf2_P           82 VIDCTPEGI   90 (337)
T ss_dssp             EEECCSTTH
T ss_pred             EEECCCchh
Confidence            999998653

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=94.89  E-value=0.052  Score=51.07  Aligned_cols=29  Identities=31%  Similarity=0.366  Sum_probs=24.5

Q ss_pred             ceEEEEecChHHHHHHHHHhhC-CCEEEEE
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF-GCNVLYN  190 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~~~  190 (331)
                      .+|||+|+|.||+.+++.+... +++|.+.
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV   32 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGV   32 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEE
Confidence            4799999999999999998765 5787654

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=94.88  E-value=0.037  Score=51.21  Aligned_cols=64  Identities=19%  Similarity=0.147  Sum_probs=48.2

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC----C-------------Cc-------cccCCHHhhhcCC
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP----V-------------PY-------AFYSNVCELAANS  212 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~----~-------------~~-------~~~~~l~ell~~a  212 (331)
                      .+.+++|.|.|. |.||+.+++.|...|.+|++.+|+...    .             ..       ....+++++++..
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            367889999996 999999999999999999999886531    0             00       0112466778899


Q ss_pred             CEEEEeccC
Q 020073          213 DALIICCAL  221 (331)
Q Consensus       213 DiV~l~~P~  221 (331)
                      |+|+.+...
T Consensus       104 d~vih~A~~  112 (352)
T 1sb8_A          104 DYVLHQAAL  112 (352)
T ss_dssp             SEEEECCSC
T ss_pred             CEEEECCcc
Confidence            998887754

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=94.87  E-value=0.046  Score=48.92  Aligned_cols=62  Identities=19%  Similarity=0.252  Sum_probs=45.3

Q ss_pred             CCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC----C--c-------cccCCH---HhhhcCCCEEEEecc
Q 020073          159 LGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV----P--Y-------AFYSNV---CELAANSDALIICCA  220 (331)
Q Consensus       159 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~----~--~-------~~~~~l---~ell~~aDiV~l~~P  220 (331)
                      ++||++.|-| .+.||+++|++|...|++|++.+++.+..    .  .       ....++   -+-+..-|+++.+.-
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNAG   87 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEALPRLDVLVNNAG   87 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEEECCC
Confidence            5899999999 56799999999999999999999876541    0  0       001122   234567899998763

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=94.86  E-value=0.034  Score=55.99  Aligned_cols=36  Identities=22%  Similarity=0.493  Sum_probs=32.5

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECC
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSR  192 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~  192 (331)
                      ..|++++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       323 ~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~  359 (598)
T 3vh1_A          323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDN  359 (598)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECC
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            46899999999999999999999999998 7888854

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=94.85  E-value=0.036  Score=50.35  Aligned_cols=62  Identities=23%  Similarity=0.245  Sum_probs=44.4

Q ss_pred             CCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC---------CccccCCHHhhhcC--CCEEEEeccC
Q 020073          160 GGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV---------PYAFYSNVCELAAN--SDALIICCAL  221 (331)
Q Consensus       160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~---------~~~~~~~l~ell~~--aDiV~l~~P~  221 (331)
                      ..+++.|.| .|.||+.+++.|...|++|++.+|+....         +.....+++++++.  .|+|+.+...
T Consensus        11 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~   84 (321)
T 2pk3_A           11 GSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAK   84 (321)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSC
T ss_pred             CcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCccccceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCcc
Confidence            357888998 69999999999999999999998875421         11111245566765  8998887754

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=94.85  E-value=0.019  Score=53.43  Aligned_cols=60  Identities=15%  Similarity=0.199  Sum_probs=45.0

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEE-EECCCCC-C------C----C--ccccCCHHhhhcC--CCEEEEeccCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVL-YNSRSKK-P------V----P--YAFYSNVCELAAN--SDALIICCALT  222 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~~~~~~-~------~----~--~~~~~~l~ell~~--aDiV~l~~P~t  222 (331)
                      .++||||+|.+|+..++.+ .-+++|+ ++|+++. .      .    +  ...+.++++++.+  .|+|++++|..
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~   78 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFS   78 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHH
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcc
Confidence            5899999999999777776 5577776 5777652 2      0    2  2356799999864  89999998854

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=94.85  E-value=0.024  Score=55.32  Aligned_cols=103  Identities=17%  Similarity=0.223  Sum_probs=63.7

Q ss_pred             CceEEEEecChHHHHHHHHHhh----------CCCEEE-EECCCCCC-----CCccccCCHHhhhc--CCCEEEEeccCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQA----------FGCNVL-YNSRSKKP-----VPYAFYSNVCELAA--NSDALIICCALT  222 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~----------~G~~V~-~~~~~~~~-----~~~~~~~~l~ell~--~aDiV~l~~P~t  222 (331)
                      -.++||||+|.||+.+++.+..          .+.+|. +++++...     .....+.++++++.  +.|+|+.++|..
T Consensus        10 ~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~~~~~~~d~~ell~d~diDvVve~tp~~   89 (444)
T 3mtj_A           10 PIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPFDVVDDPEIDIVVELIGGL   89 (444)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHTTCCEESCTHHHHTCTTCCEEEECCCSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcccCcccCCHHHHhcCCCCCEEEEcCCCc
Confidence            3589999999999999987752          456665 45665432     12334678999986  479999999863


Q ss_pred             hhhhhhccHHHHhcCCCCcEEEEcCCCCcc-CHHHHHHHHHhCCce
Q 020073          223 DQTRRMINREVMLALGKEGIIVNVGRGAVI-DENEMVRCLVRGEIA  267 (331)
Q Consensus       223 ~~t~~li~~~~l~~mk~ga~lIn~srg~~v-d~~al~~aL~~~~i~  267 (331)
                      ..-..++    ...++.|.-++..--+... +-+.|.++.++....
T Consensus        90 ~~h~~~~----~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~  131 (444)
T 3mtj_A           90 EPARELV----MQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVM  131 (444)
T ss_dssp             TTHHHHH----HHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hHHHHHH----HHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCe
Confidence            2222222    2335666655543332222 235677777765553

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=94.85  E-value=0.034  Score=52.18  Aligned_cols=30  Identities=23%  Similarity=0.367  Sum_probs=24.7

Q ss_pred             ceEEEEecChHHHHHHHHHhh-CCCEEEEEC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQA-FGCNVLYNS  191 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~-~G~~V~~~~  191 (331)
                      .+|||+|+|.||+.+++.+.. -+++|++.+
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~   34 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIN   34 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEec
Confidence            489999999999999999864 467876554

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=94.84  E-value=0.048  Score=51.61  Aligned_cols=61  Identities=20%  Similarity=0.206  Sum_probs=39.6

Q ss_pred             ceEEEEecChHHHHHHHHHhhC--C--CEEEE-ECCCCCC---C--CccccCCHHhhhcCC-------------------
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF--G--CNVLY-NSRSKKP---V--PYAFYSNVCELAANS-------------------  212 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~--G--~~V~~-~~~~~~~---~--~~~~~~~l~ell~~a-------------------  212 (331)
                      .++||||+|.||+.+++.+...  |  ++|.+ +++....   .  +...+.++++++.+.                   
T Consensus         5 i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~~~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~~~~~~   84 (358)
T 1ebf_A            5 VNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTSPK   84 (358)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTTCSS
T ss_pred             EEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChhhhccccCCCCccccHHHHHhcccCCCCCHHHHHHHhhhccC
Confidence            4799999999999999999874  3  46543 4533211   1  222224556655443                   


Q ss_pred             -CEEEEeccCC
Q 020073          213 -DALIICCALT  222 (331)
Q Consensus       213 -DiV~l~~P~t  222 (331)
                       |+|+.|+|..
T Consensus        85 ~DvVV~~t~~~   95 (358)
T 1ebf_A           85 PVILVDNTSSA   95 (358)
T ss_dssp             CEEEEECSCCH
T ss_pred             CcEEEEcCCCh
Confidence             7899988854

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=94.83  E-value=0.021  Score=52.59  Aligned_cols=86  Identities=17%  Similarity=0.151  Sum_probs=54.7

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC-------C-------Cc---cccCCHHhhhcCCCEEEEec--c
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP-------V-------PY---AFYSNVCELAANSDALIICC--A  220 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~-------~-------~~---~~~~~l~ell~~aDiV~l~~--P  220 (331)
                      .+|+|||.|.||+.+|-.|...+.  ++..+|.....       .       +.   ....+-.+.++.||+|+++.  |
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitAG~p   80 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA   80 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEecCCC
Confidence            479999999999999998876554  79999986532       0       00   01122246799999999987  3


Q ss_pred             CCh-hhhh-hc--cHH-------HHhcCCCCcEEEEcC
Q 020073          221 LTD-QTRR-MI--NRE-------VMLALGKEGIIVNVG  247 (331)
Q Consensus       221 ~t~-~t~~-li--~~~-------~l~~mk~ga~lIn~s  247 (331)
                      ..| .|+- ++  |.+       .+.+-.|.++++.++
T Consensus        81 rkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvs  118 (294)
T 2x0j_A           81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT  118 (294)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEec
Confidence            333 1221 11  222       233346778888775

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.82  E-value=0.017  Score=53.78  Aligned_cols=36  Identities=28%  Similarity=0.356  Sum_probs=32.8

Q ss_pred             CCceEEEEecChHHHHHHHHHhhC--CCEEEEECCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAF--GCNVLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~~~~~~  195 (331)
                      .|.+|.|+|.|.+|...++.++.+  |++|++.+++.+
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~  207 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKK  207 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence            588999999999999999999999  999999987654

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=94.80  E-value=0.028  Score=50.75  Aligned_cols=39  Identities=18%  Similarity=0.201  Sum_probs=34.7

Q ss_pred             ccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          157 SKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       157 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .++.||++.|.| .|.||+++|+.|...|++|++.+|+..
T Consensus        23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   62 (277)
T 4dqx_A           23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNED   62 (277)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            468999999999 589999999999999999999988753

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=94.78  E-value=0.046  Score=48.81  Aligned_cols=38  Identities=29%  Similarity=0.549  Sum_probs=34.0

Q ss_pred             cCCCceEEEEecC---hHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVGLG---NIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG~G---~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      +|+||++.|-|.+   .||+++|+.|...|++|++.+|+.+
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~   43 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKER   43 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5899999999974   6999999999999999999988653

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=94.78  E-value=0.044  Score=49.59  Aligned_cols=62  Identities=21%  Similarity=0.169  Sum_probs=47.2

Q ss_pred             CceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC--------------CCc-------cccCCHHhhhcCCCEEEEe
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP--------------VPY-------AFYSNVCELAANSDALIIC  218 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~--------------~~~-------~~~~~l~ell~~aDiV~l~  218 (331)
                      .++|.|.| .|.||+.+++.|...|.+|++.+|+...              .+.       ....++.++++.+|+|+.+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   83 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   83 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence            46899999 5999999999999999999999887421              011       1123577888999999988


Q ss_pred             ccCC
Q 020073          219 CALT  222 (331)
Q Consensus       219 ~P~t  222 (331)
                      ....
T Consensus        84 a~~~   87 (313)
T 1qyd_A           84 LAGG   87 (313)
T ss_dssp             CCCS
T ss_pred             Cccc
Confidence            7643

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.78  E-value=0.018  Score=53.22  Aligned_cols=83  Identities=19%  Similarity=0.233  Sum_probs=54.1

Q ss_pred             CCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc---c--c-CCHHhhhc-----CCCEEEEeccC
Q 020073          160 GGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA---F--Y-SNVCELAA-----NSDALIICCAL  221 (331)
Q Consensus       160 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~---~--~-~~l~ell~-----~aDiV~l~~P~  221 (331)
                      .|+++.|.|. |.||..+++.++..|++|++.+++.+.      .+..   .  . .++.+.+.     ..|+|+.+...
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~  224 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGG  224 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCCh
Confidence            5789999997 999999999999999999998876432      1110   0  0 23332221     36777766532


Q ss_pred             ChhhhhhccHHHHhcCCCCcEEEEcCC
Q 020073          222 TDQTRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       222 t~~t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                        .+    -...++.++++..++.++-
T Consensus       225 --~~----~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          225 --EF----LNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             --HH----HHHHHTTEEEEEEEEECCC
T ss_pred             --HH----HHHHHHHHhcCCEEEEEec
Confidence              11    2445566777777777653

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=94.70  E-value=0.032  Score=54.38  Aligned_cols=102  Identities=15%  Similarity=0.173  Sum_probs=62.2

Q ss_pred             ceEEEEecChHHHHHHHHHhhC-CCEEE-EECCCCCC-------C-C----------------------ccccCCHHhhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF-GCNVL-YNSRSKKP-------V-P----------------------YAFYSNVCELA  209 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~-------~-~----------------------~~~~~~l~ell  209 (331)
                      -+|||||+|.||+.+++.+... |++|. ++|++.+.       . +                      ...+.+.++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL  103 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL  103 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence            4799999999999999988754 67765 56776543       1 2                      12357899998


Q ss_pred             c--CCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCC-ccCHHHHHHHHHhCCce
Q 020073          210 A--NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGA-VIDENEMVRCLVRGEIA  267 (331)
Q Consensus       210 ~--~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~-~vd~~al~~aL~~~~i~  267 (331)
                      .  +.|+|+.++|... ...-+   .+..++.|.-++...-+- +.+-+.|.++-++..+.
T Consensus       104 ~d~dIDaVviaTp~p~-~H~e~---a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvv  160 (446)
T 3upl_A          104 SNPLIDVIIDATGIPE-VGAET---GIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVI  160 (446)
T ss_dssp             TCTTCCEEEECSCCHH-HHHHH---HHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cCCCCCEEEEcCCChH-HHHHH---HHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCe
Confidence            7  4899999998542 21111   223355665544322111 12234566666555543

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=94.70  E-value=0.039  Score=49.86  Aligned_cols=58  Identities=26%  Similarity=0.214  Sum_probs=43.2

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEec
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICC  219 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~  219 (331)
                      ++|.|.|. |-||+.+++.|...|++|++..|++.+..........+.+..+|.|+-+.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~l~~~d~vihla   59 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASGLPSCDAAVNLA   59 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTEEEHHHHHHHCCCSCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCeeecchhhHhhccCCCEEEEec
Confidence            46899996 99999999999999999999998765422221112234678899888654

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=94.69  E-value=0.047  Score=51.26  Aligned_cols=62  Identities=21%  Similarity=0.248  Sum_probs=47.6

Q ss_pred             CCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCC------Ccc-------ccCCHHhhhcCCCEEEEecc
Q 020073          159 LGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPV------PYA-------FYSNVCELAANSDALIICCA  220 (331)
Q Consensus       159 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~------~~~-------~~~~l~ell~~aDiV~l~~P  220 (331)
                      ..+++|.|.|. |.||+.+++.|...|++|++.+|+....      ...       ...++.++++.+|+|+.+..
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~  102 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA  102 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECce
Confidence            46789999996 9999999999999999999998875431      111       11246678889999987764

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=94.69  E-value=0.093  Score=51.06  Aligned_cols=37  Identities=24%  Similarity=0.374  Sum_probs=32.6

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCCEEE-EECC
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YNSR  192 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~~~  192 (331)
                      +.++.|+||.|-|+|++|+.+|+.|...|++|+ +.|.
T Consensus       234 g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~  271 (456)
T 3r3j_A          234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDS  271 (456)
T ss_dssp             TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECS
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            457899999999999999999999999999986 4553

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=94.67  E-value=0.025  Score=50.72  Aligned_cols=38  Identities=32%  Similarity=0.414  Sum_probs=34.0

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      ++.||++.|.| .|.||+++|+.|...|++|++.+|+..
T Consensus        31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~   69 (279)
T 3ctm_A           31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHP   69 (279)
T ss_dssp             CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            47899999998 689999999999999999999888764

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=94.64  E-value=0.023  Score=53.09  Aligned_cols=36  Identities=22%  Similarity=0.447  Sum_probs=32.4

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~  195 (331)
                      .|.+|.|+|.|.||...++.++..|+ +|++.+++.+
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~  202 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKH  202 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH
Confidence            47899999999999999999999999 7999987654

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=94.63  E-value=0.053  Score=50.89  Aligned_cols=30  Identities=27%  Similarity=0.403  Sum_probs=24.8

Q ss_pred             ceEEEEecChHHHHHHHHHhhC-CCEEEEEC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF-GCNVLYNS  191 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~~~~  191 (331)
                      .+|||+|+|.||+.+++.+... +++|.+.+
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~   34 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVN   34 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             eEEEEECcCHHHHHHHHHHhCCCCeEEEEEE
Confidence            4899999999999999998764 67776554

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=94.60  E-value=0.059  Score=50.50  Aligned_cols=65  Identities=22%  Similarity=0.217  Sum_probs=49.3

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCC-CEEEEECCCCCCC--------Ccc-------ccCCHHhhhcCCCEEEEecc
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFG-CNVLYNSRSKKPV--------PYA-------FYSNVCELAANSDALIICCA  220 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~~~~~~~~--------~~~-------~~~~l~ell~~aDiV~l~~P  220 (331)
                      .+++++|.|.| .|.||+.+++.|...| .+|++.+|+....        ...       ...+++++++.+|+|+.+..
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~  108 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLAT  108 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCC
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCC
Confidence            47889999999 5999999999999999 9999998865320        110       11235677889999988775


Q ss_pred             CC
Q 020073          221 LT  222 (331)
Q Consensus       221 ~t  222 (331)
                      ..
T Consensus       109 ~~  110 (377)
T 2q1s_A          109 YH  110 (377)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=94.56  E-value=0.023  Score=50.55  Aligned_cols=61  Identities=18%  Similarity=0.218  Sum_probs=46.7

Q ss_pred             CceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC-C--C-------ccccCCHHhhhcCCCEEEEeccC
Q 020073          161 GKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP-V--P-------YAFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       161 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~-~--~-------~~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      ++++.|.|. |.||+.+++.|...|++|++.+|+... .  .       .....++.++++..|+|+.+...
T Consensus         2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   73 (267)
T 3ay3_A            2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVACDLADAQAVHDLVKDCDGIIHLGGV   73 (267)
T ss_dssp             EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCCCTTEEECCCCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred             CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccEEEccCCCHHHHHHHHcCCCEEEECCcC
Confidence            368999996 999999999999999999999987643 1  1       11123466788899999987643

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.56  E-value=0.048  Score=48.80  Aligned_cols=37  Identities=24%  Similarity=0.261  Sum_probs=32.8

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      ++.||++.|.| .|.||+++|+.|...|++|++.+|+.
T Consensus         3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (278)
T 1spx_A            3 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHA   40 (278)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46789999998 58999999999999999999988864

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=94.55  E-value=0.059  Score=47.59  Aligned_cols=39  Identities=23%  Similarity=0.319  Sum_probs=34.8

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      ++.|+++.|.| .|.||+++|+.|...|++|++.+|+...
T Consensus         9 ~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~   48 (265)
T 2o23_A            9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSG   48 (265)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSS
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHh
Confidence            47899999999 6899999999999999999999887653

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.54  E-value=0.018  Score=54.28  Aligned_cols=84  Identities=14%  Similarity=0.127  Sum_probs=54.1

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC------CCcc---c--cCCHHhhhc-----CCCEEEEeccCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP------VPYA---F--YSNVCELAA-----NSDALIICCALT  222 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~------~~~~---~--~~~l~ell~-----~aDiV~l~~P~t  222 (331)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.+++.++      .+..   .  ..++.+.+.     ..|+|+-++...
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~  269 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP  269 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCH
Confidence            47899999999999999999999999 68888876543      1110   0  112222221     367777766432


Q ss_pred             hhhhhhccHHHHhcCCCCcEEEEcCC
Q 020073          223 DQTRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       223 ~~t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      +.    + ...++.++++..++.++-
T Consensus       270 ~~----~-~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          270 EI----L-KQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             HH----H-HHHHHTEEEEEEEEECCC
T ss_pred             HH----H-HHHHHHHhcCCEEEEeCC
Confidence            11    1 344566777777777654

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=94.52  E-value=0.046  Score=50.71  Aligned_cols=60  Identities=18%  Similarity=0.189  Sum_probs=42.5

Q ss_pred             ceEEEEecChHHHHHHHHHhh--CCCEEE-EECCCCCC--------CCcc-ccCCHHhhhc-----CCCEEEEeccC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQA--FGCNVL-YNSRSKKP--------VPYA-FYSNVCELAA-----NSDALIICCAL  221 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~--~G~~V~-~~~~~~~~--------~~~~-~~~~l~ell~-----~aDiV~l~~P~  221 (331)
                      .+|||||+|.||+.+++.+..  -++++. ++++++..        .+.. ...+.++++.     +.|+|+.++|.
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~   81 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSA   81 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCH
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCCh
Confidence            589999999999999999843  466654 56776443        1221 2345677764     57999999983

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=94.51  E-value=0.061  Score=48.06  Aligned_cols=63  Identities=21%  Similarity=0.131  Sum_probs=46.0

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC-C-------CccccCCHHhhhc-------CCCEEEEecc
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP-V-------PYAFYSNVCELAA-------NSDALIICCA  220 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~-------~~~~~~~l~ell~-------~aDiV~l~~P  220 (331)
                      ++.||++.|.| .|.||+++|+.|...|++|++.+|+... .       +.....+++++++       ..|+|+.+.-
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~~Ag   83 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAG   83 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCCSCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcccCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            47899999999 6899999999999999999998887543 1       1111123334443       6899998764

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=94.51  E-value=0.017  Score=54.07  Aligned_cols=82  Identities=18%  Similarity=0.233  Sum_probs=52.7

Q ss_pred             CCceEEEE-ecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc-----ccCCHHhhh-----cCCCEEEEeccCC
Q 020073          160 GGKRVGIV-GLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA-----FYSNVCELA-----ANSDALIICCALT  222 (331)
Q Consensus       160 ~g~~vgIi-G~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~-----~~~~l~ell-----~~aDiV~l~~P~t  222 (331)
                      .|++|.|+ |.|.||..+++.++..|++|++.+++.++      .+..     ...++.+.+     ...|+|+.++...
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~  246 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGAA  246 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCGG
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCHH
Confidence            57899999 68999999999999999999999876543      1110     011222222     2467777665421


Q ss_pred             hhhhhhccHHHHhcCCCCcEEEEcC
Q 020073          223 DQTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       223 ~~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                            .-...+..++++..++.++
T Consensus       247 ------~~~~~~~~l~~~G~iv~~g  265 (353)
T 4dup_A          247 ------YFERNIASLAKDGCLSIIA  265 (353)
T ss_dssp             ------GHHHHHHTEEEEEEEEECC
T ss_pred             ------HHHHHHHHhccCCEEEEEE
Confidence                  1133456667777777665

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=94.50  E-value=0.041  Score=51.58  Aligned_cols=30  Identities=30%  Similarity=0.400  Sum_probs=24.5

Q ss_pred             ceEEEEecChHHHHHHHHHhhC-CCEEEEEC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF-GCNVLYNS  191 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~~~~  191 (331)
                      .+|||+|+|.||+.+.|.+... .++|.+.+
T Consensus         2 ikVgI~G~G~iGr~l~R~l~~~~~veivain   32 (334)
T 3cmc_O            2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVN   32 (334)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTCTTEEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHhCCCCeEEEEEe
Confidence            3799999999999999998754 56776553

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=94.49  E-value=0.049  Score=50.05  Aligned_cols=65  Identities=25%  Similarity=0.191  Sum_probs=45.3

Q ss_pred             ccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC----C----Ccc-------ccCCHHhhhcC--CCEEEEe
Q 020073          157 SKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP----V----PYA-------FYSNVCELAAN--SDALIIC  218 (331)
Q Consensus       157 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~----~~~-------~~~~l~ell~~--aDiV~l~  218 (331)
                      ..+.+++|.|.| .|.||+.+++.|...|.+|++.+|....    .    ...       ...++++++++  .|+|+.+
T Consensus        17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~   96 (333)
T 2q1w_A           17 RGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHT   96 (333)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             ecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEEC
Confidence            357889999999 7999999999999999999999886432    0    110       11235566776  8988877


Q ss_pred             ccC
Q 020073          219 CAL  221 (331)
Q Consensus       219 ~P~  221 (331)
                      ...
T Consensus        97 A~~   99 (333)
T 2q1w_A           97 AAS   99 (333)
T ss_dssp             CCC
T ss_pred             cee
Confidence            643

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=94.49  E-value=0.025  Score=53.05  Aligned_cols=83  Identities=11%  Similarity=0.005  Sum_probs=50.0

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhC---CCEEEEEC-CC-CCC-C---Cc-cccCCHH-hhhcCCCEEEEeccCChhhhhhc
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAF---GCNVLYNS-RS-KKP-V---PY-AFYSNVC-ELAANSDALIICCALTDQTRRMI  229 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~---G~~V~~~~-~~-~~~-~---~~-~~~~~l~-ell~~aDiV~l~~P~t~~t~~li  229 (331)
                      .+|+|+| +|.||+.+.+.|...   .+++..+. ++ ... .   +. ....+++ +.+..+|+|+.|+|... +....
T Consensus         4 ~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~~~vDvVf~a~g~~~-s~~~a   82 (336)
T 2r00_A            4 FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGEL-SAKWA   82 (336)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCGGGCSEEEECSCHHH-HHHHH
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCChHHhcCCCEEEECCCchH-HHHHH
Confidence            5899999 999999999998765   34666554 22 211 0   11 0111222 24568999999988542 22222


Q ss_pred             cHHHHhcCCCCcEEEEcCCC
Q 020073          230 NREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       230 ~~~~l~~mk~ga~lIn~srg  249 (331)
                       ...   ++.|+.+|+.|.-
T Consensus        83 -~~~---~~~G~~vId~s~~   98 (336)
T 2r00_A           83 -PIA---AEAGVVVIDNTSH   98 (336)
T ss_dssp             -HHH---HHTTCEEEECSST
T ss_pred             -HHH---HHcCCEEEEcCCc
Confidence             222   3567888887643

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=94.49  E-value=0.023  Score=52.75  Aligned_cols=81  Identities=11%  Similarity=0.071  Sum_probs=55.5

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-C----Ccc-------ccCCHHhh-hcCCCEEEEeccCChhhhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-V----PYA-------FYSNVCEL-AANSDALIICCALTDQTRR  227 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~----~~~-------~~~~l~el-l~~aDiV~l~~P~t~~t~~  227 (331)
                      .+++.|+|+|.+|+.+++.|...|. |++.+++++. .    +..       ....|.++ ++++|.|+++++.+.  .+
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~--~n  191 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDS--ET  191 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHHHHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHH--HH
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhhHHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccH--HH
Confidence            4579999999999999999999999 9999887643 1    111       11234555 788999999987553  33


Q ss_pred             hccHHHHhcCCCCcEEE
Q 020073          228 MINREVMLALGKEGIIV  244 (331)
Q Consensus       228 li~~~~l~~mk~ga~lI  244 (331)
                      +.-......+.+...+|
T Consensus       192 ~~~~~~ar~~~~~~~ii  208 (336)
T 1lnq_A          192 IHCILGIRKIDESVRII  208 (336)
T ss_dssp             HHHHHHHHTTCTTSEEE
T ss_pred             HHHHHHHHHHCCCCeEE
Confidence            33345556666663333

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=94.48  E-value=0.66  Score=43.76  Aligned_cols=91  Identities=13%  Similarity=0.085  Sum_probs=64.9

Q ss_pred             ccCCCceEEEEec--ChHHHHHHHHHhhCCCEEEEECCCCCCC---------------C--ccccCCHHhhhcCCCEEEE
Q 020073          157 SKLGGKRVGIVGL--GNIGLQVAKRLQAFGCNVLYNSRSKKPV---------------P--YAFYSNVCELAANSDALII  217 (331)
Q Consensus       157 ~~l~g~~vgIiG~--G~IG~~~A~~l~~~G~~V~~~~~~~~~~---------------~--~~~~~~l~ell~~aDiV~l  217 (331)
                      ..+.|.+|++||=  +++.++.+..+..+|++|.+..+..-..               +  .....+++|+++++|+|..
T Consensus       177 ~~l~gl~ia~vGD~~~~va~S~~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt  256 (358)
T 4h31_A          177 KALADIQFAYLGDARNNVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFLYT  256 (358)
T ss_dssp             CCGGGCEEEEESCTTSHHHHHHHHHHHHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEE
T ss_pred             CCcCceEEEecCCCCcccchHHHHHHHhcCceEEEeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHHHHhccCcEEEE
Confidence            3588999999994  5899999999999999999887642110               1  1235689999999999985


Q ss_pred             eccC----Chh---------hhhhccHHHHhcC-CCCcEEEEcC
Q 020073          218 CCAL----TDQ---------TRRMINREVMLAL-GKEGIIVNVG  247 (331)
Q Consensus       218 ~~P~----t~~---------t~~li~~~~l~~m-k~ga~lIn~s  247 (331)
                      -.=.    .++         ...-++.+.++++ ||+++|.-+.
T Consensus       257 ~~w~s~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~L  300 (358)
T 4h31_A          257 DVWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCL  300 (358)
T ss_dssp             CCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEECS
T ss_pred             EEEEEcccCchhHHHHHHHHhCcccCHHHHHhcCCCCcEEECCC
Confidence            3211    111         1134688888764 7888888763

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=94.48  E-value=0.022  Score=53.15  Aligned_cols=61  Identities=18%  Similarity=0.199  Sum_probs=45.9

Q ss_pred             CceEEEEe-cChHHHHHHHHHhhCC--CEEEEECCCCCC-------C---C--ccc---cCCHHhhhcCCCEEEEeccC
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQAFG--CNVLYNSRSKKP-------V---P--YAF---YSNVCELAANSDALIICCAL  221 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~~~G--~~V~~~~~~~~~-------~---~--~~~---~~~l~ell~~aDiV~l~~P~  221 (331)
                      .++|+|+| .|.+|+.++..|...|  .+|..+|+....       .   .  ...   ..++.++++.+|+|+++.+.
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~   86 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGV   86 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCc
Confidence            36899999 8999999999998777  688888865431       0   1  111   12567889999999999863

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=94.47  E-value=0.055  Score=50.30  Aligned_cols=38  Identities=21%  Similarity=0.290  Sum_probs=33.8

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhh--CCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQA--FGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~--~G~~V~~~~~~~~  195 (331)
                      ++.+++|.|.| .|-||+.+++.|..  .|++|++.+|+..
T Consensus         7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~   47 (362)
T 3sxp_A            7 ELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS   47 (362)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred             hcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence            57899999997 69999999999998  8999999988553

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.41  E-value=0.13  Score=50.44  Aligned_cols=96  Identities=14%  Similarity=0.196  Sum_probs=69.5

Q ss_pred             cCCCceEEEEec----------ChHHHHHHHHHhhCCCEEEEECCCCCC----------CC-------ccccCCHHhhhc
Q 020073          158 KLGGKRVGIVGL----------GNIGLQVAKRLQAFGCNVLYNSRSKKP----------VP-------YAFYSNVCELAA  210 (331)
Q Consensus       158 ~l~g~~vgIiG~----------G~IG~~~A~~l~~~G~~V~~~~~~~~~----------~~-------~~~~~~l~ell~  210 (331)
                      .+.|++|+|+|+          .+-...+++.|...|.+|.+||+....          .+       .....++.+.++
T Consensus       332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (481)
T 2o3j_A          332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAAR  411 (481)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHT
T ss_pred             ccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHc
Confidence            478999999997          467889999999999999999997532          00       112357788999


Q ss_pred             CCCEEEEeccCChhhhhhccHHHH-hcCCCCcEEEEcCCCCccCHHHH
Q 020073          211 NSDALIICCALTDQTRRMINREVM-LALGKEGIIVNVGRGAVIDENEM  257 (331)
Q Consensus       211 ~aDiV~l~~P~t~~t~~li~~~~l-~~mk~ga~lIn~srg~~vd~~al  257 (331)
                      .+|.|++++... +.+. ++.+.+ +.|+...+++|+ |+- +|.+.+
T Consensus       412 ~ad~~vi~t~~~-~f~~-~~~~~~~~~~~~~~~i~D~-r~~-~~~~~~  455 (481)
T 2o3j_A          412 GAHAIVVLTEWD-EFVE-LNYSQIHNDMQHPAAIFDG-RLI-LDQKAL  455 (481)
T ss_dssp             TCSEEEECSCCG-GGTT-SCHHHHHHHSCSSCEEEES-SSC-SCHHHH
T ss_pred             CCCEEEEcCCcH-Hhhc-cCHHHHHHhcCCCCEEEEC-CCC-CCHHHH
Confidence            999999998764 3333 354444 467776688886 654 565543

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=94.41  E-value=0.05  Score=48.83  Aligned_cols=64  Identities=25%  Similarity=0.268  Sum_probs=45.7

Q ss_pred             ccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC-CC--------ccccCCHHhhh-------cCCCEEEEec
Q 020073          157 SKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP-VP--------YAFYSNVCELA-------ANSDALIICC  219 (331)
Q Consensus       157 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~-~~--------~~~~~~l~ell-------~~aDiV~l~~  219 (331)
                      .++.||++.|.|. |.||+++|+.|...|++|++.+++... ..        .....++++++       ..-|+|+.+.
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nA   89 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFKIDVTNEEEVKEAVEKTTKKYGRIDILVNNA   89 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CTTSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhccCceeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            4689999999995 789999999999999999999887654 11        11112233333       3789999876


Q ss_pred             c
Q 020073          220 A  220 (331)
Q Consensus       220 P  220 (331)
                      -
T Consensus        90 g   90 (269)
T 3vtz_A           90 G   90 (269)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=94.40  E-value=0.075  Score=46.07  Aligned_cols=60  Identities=17%  Similarity=0.124  Sum_probs=43.5

Q ss_pred             CceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC-------CccccCCHHhhhc------CCCEEEEecc
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV-------PYAFYSNVCELAA------NSDALIICCA  220 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-------~~~~~~~l~ell~------~aDiV~l~~P  220 (331)
                      |+++.|.| .|.||+++++.|...|++|++.+|+....       +.....+++++++      ..|+|+.+..
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~ag   75 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAG   75 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSSSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCccccceEEEeCCCCCHHHHHHHHHHHHhhCCceEEEEccc
Confidence            67899998 68999999999999999999988875421       1111223455555      6788887753

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=94.33  E-value=0.12  Score=47.84  Aligned_cols=95  Identities=15%  Similarity=0.257  Sum_probs=60.8

Q ss_pred             ceEEEEe-cChHHHHHHHHHhh---CCCEEEEECCCCCC---------CCc--ccc----CCHHhhhcCCCEEEEeccCC
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQA---FGCNVLYNSRSKKP---------VPY--AFY----SNVCELAANSDALIICCALT  222 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~---~G~~V~~~~~~~~~---------~~~--~~~----~~l~ell~~aDiV~l~~P~t  222 (331)
                      .+|+||| .|.+|+.+|..|..   +.-++..+|.....         ...  ...    .+..+.+++||+|+++.+..
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~~   80 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVA   80 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCCC
Confidence            3799999 89999999999864   44589999987621         111  111    24578899999999997432


Q ss_pred             --h-hhh-hhc--cH-------HHHhcCCCCcEEEEcCCCCccCHHHHH
Q 020073          223 --D-QTR-RMI--NR-------EVMLALGKEGIIVNVGRGAVIDENEMV  258 (331)
Q Consensus       223 --~-~t~-~li--~~-------~~l~~mk~ga~lIn~srg~~vd~~al~  258 (331)
                        + .|+ .++  |.       +.+....|.+++++++  ..+|.-..+
T Consensus        81 rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvd~~t~~  127 (312)
T 3hhp_A           81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNTTVAI  127 (312)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec--CcchhHHHH
Confidence              1 111 111  11       1222336788999995  556665544

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=94.31  E-value=0.044  Score=48.78  Aligned_cols=40  Identities=28%  Similarity=0.356  Sum_probs=33.4

Q ss_pred             ccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          157 SKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       157 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      ..+.||++.|.| .|.||+++|+.|...|++|++.+|+...
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   57 (253)
T 2nm0_A           17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEP   57 (253)
T ss_dssp             ---CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHh
Confidence            357899999999 6899999999999999999999887654

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=94.30  E-value=0.019  Score=57.07  Aligned_cols=38  Identities=26%  Similarity=0.404  Sum_probs=29.7

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .+.|+++.|+|.|.+|+++|+.|...|++|++++|+..
T Consensus       361 ~l~~k~vlV~GaGGig~aia~~L~~~G~~V~i~~R~~~  398 (523)
T 2o7s_A          361 PLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYE  398 (523)
T ss_dssp             -----CEEEECCSHHHHHHHHHHHHHCC-CEEEESSHH
T ss_pred             ccCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            47789999999999999999999999999999998753

>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}

Probab=94.28  E-value=0.1  Score=50.27  Aligned_cols=60  Identities=15%  Similarity=0.228  Sum_probs=47.9

Q ss_pred             CCCceEEEEe-----cCh---HHHHHHHHHhhCCCEEEEECCCCCC-----C----------C--ccccCCHHhhhcCCC
Q 020073          159 LGGKRVGIVG-----LGN---IGLQVAKRLQAFGCNVLYNSRSKKP-----V----------P--YAFYSNVCELAANSD  213 (331)
Q Consensus       159 l~g~~vgIiG-----~G~---IG~~~A~~l~~~G~~V~~~~~~~~~-----~----------~--~~~~~~l~ell~~aD  213 (331)
                      +.|++|+|||     +|.   +.++++..+..+|++|.+..+..-.     .          +  +....+++++++++|
T Consensus       186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~d~~eav~~AD  265 (418)
T 2yfk_A          186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTNSMAEAFKDAD  265 (418)
T ss_dssp             GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEEESCHHHHHTTCS
T ss_pred             cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhcCCC
Confidence            7899999997     354   9999999999999999988875321     0          1  123578999999999


Q ss_pred             EEEEe
Q 020073          214 ALIIC  218 (331)
Q Consensus       214 iV~l~  218 (331)
                      +|..-
T Consensus       266 VVytd  270 (418)
T 2yfk_A          266 VVYPK  270 (418)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            99985

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=94.27  E-value=0.075  Score=49.43  Aligned_cols=65  Identities=17%  Similarity=0.178  Sum_probs=49.7

Q ss_pred             ccCCCceEEEEe-cChHHHHHHHHHhhC-CC-EEEEECCCCCC-----------------CCccccCCHHhhhcCCCEEE
Q 020073          157 SKLGGKRVGIVG-LGNIGLQVAKRLQAF-GC-NVLYNSRSKKP-----------------VPYAFYSNVCELAANSDALI  216 (331)
Q Consensus       157 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~-G~-~V~~~~~~~~~-----------------~~~~~~~~l~ell~~aDiV~  216 (331)
                      ..+.|++|.|.| .|.||+.+++.|... |. +|++++|+..+                 .+.....++.++++..|+|+
T Consensus        17 ~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vi   96 (344)
T 2gn4_A           17 NMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICI   96 (344)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred             HhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEE
Confidence            357899999999 699999999999988 98 99999886431                 01111234667888999999


Q ss_pred             EeccC
Q 020073          217 ICCAL  221 (331)
Q Consensus       217 l~~P~  221 (331)
                      .+...
T Consensus        97 h~Aa~  101 (344)
T 2gn4_A           97 HAAAL  101 (344)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            88754

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=94.26  E-value=0.077  Score=46.95  Aligned_cols=40  Identities=18%  Similarity=0.223  Sum_probs=33.0

Q ss_pred             CccCCCceEEEEe-cChHHHHHHHHHhhCC---CEEEEECCCCC
Q 020073          156 GSKLGGKRVGIVG-LGNIGLQVAKRLQAFG---CNVLYNSRSKK  195 (331)
Q Consensus       156 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G---~~V~~~~~~~~  195 (331)
                      ...+.++++.|.| .|.||+++|+.|...|   ++|++.+|+..
T Consensus        16 ~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~   59 (267)
T 1sny_A           16 PRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNRE   59 (267)
T ss_dssp             ----CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTT
T ss_pred             ccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChh
Confidence            4568999999998 6999999999999999   99999988764

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=94.22  E-value=0.099  Score=47.34  Aligned_cols=59  Identities=19%  Similarity=0.217  Sum_probs=43.7

Q ss_pred             CceEEEEe-cChHHHHHHHHHhhCCCEEEEECC-CCCC---------CC------------ccccCCHHhhhcCCCEEEE
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSR-SKKP---------VP------------YAFYSNVCELAANSDALII  217 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~-~~~~---------~~------------~~~~~~l~ell~~aDiV~l  217 (331)
                      ||+|.|.| .|.||+.+++.|...|.+|++..| +...         ..            .....+++++++.+|+|+.
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   80 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFH   80 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEEE
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEEE
Confidence            57899999 699999999999999999998876 4311         00            0112356778889999887


Q ss_pred             ec
Q 020073          218 CC  219 (331)
Q Consensus       218 ~~  219 (331)
                      +.
T Consensus        81 ~A   82 (322)
T 2p4h_X           81 TA   82 (322)
T ss_dssp             CC
T ss_pred             cC
Confidence            76

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=94.21  E-value=0.02  Score=52.89  Aligned_cols=82  Identities=15%  Similarity=0.194  Sum_probs=52.8

Q ss_pred             CCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc-----ccCCHHh----hh--cCCCEEEEeccC
Q 020073          160 GGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA-----FYSNVCE----LA--ANSDALIICCAL  221 (331)
Q Consensus       160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~-----~~~~l~e----ll--~~aDiV~l~~P~  221 (331)
                      .|++|.|+| .|.||..+++.++..|++|++.+++.++      .+..     ...++.+    +.  ...|+|+.++..
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  219 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQ  219 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSCG
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCCh
Confidence            578999999 8999999999999999999998876543      1110     0112222    11  246777666542


Q ss_pred             ChhhhhhccHHHHhcCCCCcEEEEcC
Q 020073          222 TDQTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       222 t~~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                       +    . -...++.++++..++.++
T Consensus       220 -~----~-~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          220 -D----T-WLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             -G----G-HHHHHTTEEEEEEEEECC
T ss_pred             -H----H-HHHHHHHhcCCCEEEEEe
Confidence             1    1 134456677777777765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	331
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	2e-35
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	1e-30
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	3e-30
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	4e-28
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	4e-28
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	1e-20
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	2e-18
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	6e-18
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	2e-15
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	9e-12
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	2e-11
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	4e-11
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	5e-10
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	6e-10
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	1e-09
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	5e-09
d1pjqa1	113	c.2.1.11 (A:1-113) Siroheme synthase CysG, domain	7e-09
d1sc6a2	132	c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh	1e-08
d1vpda2	161	c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase	2e-07
d2hmva1	134	c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [T	6e-06
d3cuma2	162	c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase	3e-04
d2jfga1	93	c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-	6e-04
d2f1ka2	165	c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S	6e-04
d1iy8a_	258	c.2.1.2 (A:) Levodione reductase {Corynebacterium	0.001
d1c1da1	201	c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {R	0.001
d2cvza2	156	c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase	0.001
d1i36a2	152	c.2.1.6 (A:1-152) Conserved hypothetical protein M	0.001
d1j5pa4	132	c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein	0.001
d1zk4a1	251	c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase	0.001
d1pgja2	178	c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase	0.002
d2d1ya1	248	c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T	0.002
d1hwxa1	293	c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (	0.003
d1ulsa_	242	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	0.004
d1kyqa1	150	c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferr	0.004
d1v8ba1	163	c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolas	0.004

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score =  125 bits (313), Expect = 2e-35
 Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 7/188 (3%)

Query: 117 SDDAADAAVGLLIDVWRKISSADRFLRQGLWSK-IGDYPLGSKLGGKRVGIVGLGNIGLQ 175
           +   A+ A+ LL+   R+    ++ +R   W        +G KL  K +GI G G+IG  
Sbjct: 2   TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQA 61

Query: 176 VAKRLQAFGCNVLYNSRSKKPVPYAFYSNVC------ELAANSDALIICCALTDQTRRMI 229
           +AKR Q F  ++ Y    +                   L + S    +    T +TR   
Sbjct: 62  LAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF 121

Query: 230 NREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDN 289
           N+  + +L +  I+VN  RG ++D   +V  L  G +A AG DVF  EP + +   +L N
Sbjct: 122 NKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPN 181

Query: 290 VVLQPHRA 297
             L PH  
Sbjct: 182 TFLFPHIG 189

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  112 bits (280), Expect = 1e-30
 Identities = 60/179 (33%), Positives = 88/179 (49%), Gaps = 6/179 (3%)

Query: 121 ADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRL 180
           A+ A+ LL+   R+I +AD  LR+  W +           GK VG+VGLG IG  VA+R+
Sbjct: 6   AEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIF--GKTVGVVGLGRIGQLVAQRI 63

Query: 181 QAFGCNVLYNSRSKKPV----PYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLA 236
            AFG  V+       P           ++ +L A +D + +    T +T  +I++E +  
Sbjct: 64  AAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAK 123

Query: 237 LGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPH 295
                IIVN  RG ++DE  +   +  G +  AGLDVF  EP     L EL  VV+ PH
Sbjct: 124 TKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPH 182

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score =  111 bits (278), Expect = 3e-30
 Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 7/184 (3%)

Query: 121 ADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRL 180
           A+  V +++ + R    +  + R+G W+          L    VG V  G IGL V +RL
Sbjct: 4   AEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRL 63

Query: 181 QAFGCNVLYNSRSKKPVP------YAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234
             F  ++ Y  R + P          +++   ++    D + + C L  +T  MIN E +
Sbjct: 64  APFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETL 123

Query: 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPK-ELLELDNVVLQ 293
               +   IVN  RG + D + + R L  G +AG   DV+  +P         +    + 
Sbjct: 124 KLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMT 183

Query: 294 PHRA 297
           PH +
Sbjct: 184 PHIS 187

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score =  105 bits (263), Expect = 4e-28
 Identities = 52/192 (27%), Positives = 99/192 (51%), Gaps = 12/192 (6%)

Query: 118 DDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGD-----YPLGSKLGGKRVGIVGLGNI 172
           ++ AD+ +  +++++R+ +   + LR+G   +  +         +++ G+ +GI+GLG +
Sbjct: 1   EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 60

Query: 173 GLQVAKRLQAFGCNVLYNSRSK-----KPVPYAFYSNVCELAANSDALIICCALTDQTRR 227
           G  VA R +AFG NVL+          + +     S + +L  +SD + + C L +    
Sbjct: 61  GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH 120

Query: 228 MINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE--LL 285
           +IN   +  + +   +VN  RG ++DE  + + L  G I GA LDV E+EP+   +  L 
Sbjct: 121 LINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLK 180

Query: 286 ELDNVVLQPHRA 297
           +  N++  PH A
Sbjct: 181 DAPNLICTPHAA 192

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  105 bits (263), Expect = 4e-28
 Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 9/188 (4%)

Query: 117 SDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQV 176
           +   A+  +G L+ + R +  A+    +G+ +K+      ++  GK++GI+G G+IG Q+
Sbjct: 2   TRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEAR--GKKLGIIGYGHIGTQL 59

Query: 177 AKRLQAFGCNVLYNSRS--KKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM 234
               ++ G  V +                ++ +L   SD + +       T+ M+  + +
Sbjct: 60  GILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEI 119

Query: 235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE-----LLELDN 289
             +    +++N  RG V+D   +   L    +AGA +DVF  EP    +     L E DN
Sbjct: 120 SLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDN 179

Query: 290 VVLQPHRA 297
           V+L PH  
Sbjct: 180 VLLTPHIG 187

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 85.6 bits (210), Expect = 1e-20
 Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 5/182 (2%)

Query: 118 DDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVA 177
           D  A+ A+ LL+  +++I      +++G + +  + PL     G++V ++GLG IG +V 
Sbjct: 2   DAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQ---GEKVAVLGLGEIGTRVG 58

Query: 178 KRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLAL 237
           K L A G  V   SR+ K  P+ F +++ E    + A +    L   TR ++  + +  +
Sbjct: 59  KILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALM 118

Query: 238 GKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPK--ELLELDNVVLQPH 295
            ++ + VNVGR  V+D + ++R L          DV+       K  E   L NVV  P 
Sbjct: 119 AEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPW 178

Query: 296 RA 297
            A
Sbjct: 179 VA 180

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 79.9 bits (195), Expect = 2e-18
 Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 17/195 (8%)

Query: 121 ADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRL 180
           A+ A+   + + R +      L+ G + K G + +G +LG + VG++G G+IG    K  
Sbjct: 6   AEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF-IGKELGQQTVGVMGTGHIGQVAIKLF 64

Query: 181 QAFGCNVLYNSRSKKPVPYAFYSNVC--ELAANSDALIICCALTDQTRRMINREVMLALG 238
           + FG  V+          +  +  V   +L   SD + +     +Q   +IN      + 
Sbjct: 65  KGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMK 124

Query: 239 KEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVP--------------KEL 284
              I++N  R  +ID   M+  L  G++AG G+D +E E                   EL
Sbjct: 125 PGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDEL 184

Query: 285 LELDNVVLQPHRAVF 299
           L + NVVL PH A +
Sbjct: 185 LGMPNVVLSPHIAYY 199

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 78.7 bits (192), Expect = 6e-18
 Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 19/194 (9%)

Query: 121 ADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRL 180
           A+ A      + R+  + D  + +          +G ++  + VG+VG G+IG    + +
Sbjct: 5   AEHAAIQAARILRQDKAMDEKVARHDLRW--APTIGREVRDQVVGVVGTGHIGQVFMQIM 62

Query: 181 QAFGCNVLYNSRSKKPVPY---AFYSNVCELAANSDALIICCALTDQTRRMINREVMLAL 237
           + FG  V+     + P       +  ++ +L   +D + +          MIN E +  +
Sbjct: 63  EGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKM 122

Query: 238 GKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKE-------------- 283
            ++ +IVNV RG ++D + ++R L  G+I G  +DV+E E  +  E              
Sbjct: 123 KQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLAD 182

Query: 284 LLELDNVVLQPHRA 297
           L+   NV++ P  A
Sbjct: 183 LIARPNVLVTPKTA 196

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 69.2 bits (169), Expect = 2e-15
 Identities = 22/146 (15%), Positives = 43/146 (29%), Gaps = 31/146 (21%)

Query: 39  FQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIH 98
           F+L    E  L  + F I     +  +  +  S +T + L  +P+L+ +   +AG++H+ 
Sbjct: 7   FELPPEAEEELR-KYFKIVRGGDLGNVEAALVSRITAEELAKMPRLKFIQVVTAGLDHLP 65

Query: 99  MPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSK 158
                     VA                ++++  R +                       
Sbjct: 66  WESIPPHVT-VAGNAGSNGYGNERVWRQMVMEAVRNL----------------------- 101

Query: 159 LGGKRVGIVGLGNIGLQVAKRLQAFG 184
                      G     +AKR    G
Sbjct: 102 ------ITYATGGRPRNIAKREDYIG 121

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 59.4 bits (143), Expect = 9e-12
 Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 10/134 (7%)

Query: 16  PRVLVIKPPPP--LTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPV 73
           P VL+     P  +   GD+   R        +        L++     +A+L    + V
Sbjct: 3   PVVLIADKLAPSTVAALGDQVEVRWVDGPDRDK--------LLAAVPEADALLVRSATTV 54

Query: 74  TLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWR 133
             ++L   PKL++V  A  G++++ +     RG+ V NA +  S   A    G  +    
Sbjct: 55  DAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESV 114

Query: 134 KISSADRFLRQGLW 147
           +++ A  F+   + 
Sbjct: 115 RLALAGEFVPDAVN 128

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 2e-11
 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 1/104 (0%)

Query: 44  AYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECR 103
           A+  + S ++      +     L      +T + L     LR++V   +G ++I +    
Sbjct: 26  AFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAG 85

Query: 104 RRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLW 147
             GIAV N  +  S  +  A++ +  +  R+I  A         
Sbjct: 86  DLGIAVCNVPA-ASVYSEQASIEMREEAAREIRRAITGRIPDSL 128

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 58.8 bits (142), Expect = 4e-11
 Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 35/166 (21%)

Query: 15  LPRVLVIKPPPPLTLFGDKFI-SRSFQLLKAYESSLSLEQFLISHAHSI----------- 62
           LP++     P   TL   K I     QLL +    L L ++L S+ H++           
Sbjct: 24  LPKI--DHYPGGQTLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDS 81

Query: 63  ---------EAILCS--GDSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVAN 111
                    + ++      + +T + +     L+L +TA  G +H+ +     R + VA 
Sbjct: 82  VFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAE 141

Query: 112 AGSIFSDDAADAAVGL---------LIDVWRKISSADRFLRQGLWS 148
                S      A              +  R I      ++ G  +
Sbjct: 142 VTYCNSTTLTAQARYAAGTREILECFFEG-RPIRDEYLIVQGGALA 186

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 54.6 bits (131), Expect = 5e-10
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTL 75
            ++L+  P P   +        S+ ++   +        +I  A S++A+L + +     
Sbjct: 2   KKILITWPLPEAAM---ARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRK 58

Query: 76  DILRLLP-KLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRK 134
           +++  +P  ++ + T S G +HI +  C+ RGI V NA    +    D A      +   
Sbjct: 59  EVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDAL 118

Query: 135 ISSADR 140
              AD 
Sbjct: 119 FGGADM 124

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 54.3 bits (130), Expect = 6e-10
 Identities = 11/97 (11%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 51  LEQFLISHAHSIEAILCSGDSPVTLDILR--LLPKLRLVVTASAGVNHIHMPECRRRGIA 108
           L++  +  A   + I     +P    +        ++ +   + G ++I M   ++ GI 
Sbjct: 34  LDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIR 93

Query: 109 VANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQG 145
           ++N  +       +     L  +   ++  +      
Sbjct: 94  LSNVPAYTETAVHNMVYFSLQHLVDFLTKGETSTEVT 130

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 1e-09
 Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 4/120 (3%)

Query: 159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIIC 218
           + GK   + G G++G   A+ L+ FG  V+           A      E+    +A    
Sbjct: 22  IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAM-EGYEVTTMDEACQEG 80

Query: 219 --CALTDQTRRMINREVMLALGKEGIIVNVG-RGAVIDENEMVRCLVRGEIAGAGLDVFE 275
                T     +I       +  + I+ N+G     ID   +    V        +D + 
Sbjct: 81  NIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYR 140

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 51.9 bits (124), Expect = 5e-09
 Identities = 15/110 (13%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 42  LKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLP--KLRLVVTASAGVNHIHM 99
           ++  +  L+ E   ++ A   + ++         + L+ L    +  +   + GV++I M
Sbjct: 28  VEYTDKLLTPE--TVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDM 85

Query: 100 PECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK 149
            + +  G  + N            AV  ++      +     L +G  ++
Sbjct: 86  AKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNN---LELVEGKEAE 129

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

 Score = 50.9 bits (121), Expect = 7e-09
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 5/99 (5%)

Query: 153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSN-----VCE 207
            P+  +L  +   IVG G++  + A+ L   G  +  N+ +  P    + +      V  
Sbjct: 4   LPIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEG 63

Query: 208 LAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNV 246
               +       A+       +N+ V  A     I  NV
Sbjct: 64  PFDETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNV 102

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 50.8 bits (121), Expect = 1e-08
 Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 3/130 (2%)

Query: 16  PRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTL 75
            + L+++      L  +   +  +  ++ ++ +L  EQ L         I     + +T 
Sbjct: 5   IKFLLVEGVHQKAL--ESLRAAGYTNIEFHKGALDDEQ-LKESIRDAHFIGLRSRTHLTE 61

Query: 76  DILRLLPKLRLVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKI 135
           D++    KL  +   + G N + +    +RGI V NA    + +A +     +     K 
Sbjct: 62  DVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLIKY 121

Query: 136 SSADRFLRQG 145
           S     L   
Sbjct: 122 SDNGSTLSAV 131

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

 Score = 48.3 bits (114), Expect = 2e-07
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 13/96 (13%)

Query: 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYA------FYSNVCELAANSDALI 216
           +VG +GLG +G  ++K L   G +++ + R+ + +           S    +A   D +I
Sbjct: 2   KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 61

Query: 217 ICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVI 252
                +   + +        LG+ GII     G V+
Sbjct: 62  TMLPNSPHVKEVA-------LGENGIIEGAKPGTVL 90

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} Length = 134

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

 Score = 43.0 bits (100), Expect = 6e-06
 Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 14/110 (12%)

Query: 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK------------PVPYAFYSNVCELA 209
           K+  ++GLG  G  + K L   G  VL    +++             +  A   N     
Sbjct: 1   KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSL 60

Query: 210 ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVR 259
              +   +  A+        +    L L +  I     +      ++++ 
Sbjct: 61  GIRNFEYVIVAIGAN--IQASTLTTLLLKELDIPNIWVKAQNYYHHKVLE 108

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 1/91 (1%)

Query: 162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCAL 221
           K++  +GLG++G  +A  L   G  +      +  V     +      +  DA +    +
Sbjct: 2   KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDA-VQGADV 60

Query: 222 TDQTRRMINREVMLALGKEGIIVNVGRGAVI 252
                        L L  +G++ ++  G ++
Sbjct: 61  VISMLPASQHVEGLYLDDDGLLAHIAPGTLV 91

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 93

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 36.2 bits (83), Expect = 6e-04
 Identities = 12/43 (27%), Positives = 14/43 (32%)

Query: 157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPY 199
           +   GK V I+GLG  GL       A G           P   
Sbjct: 1   ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL 43

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

 Score = 37.5 bits (85), Expect = 6e-04
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVC 206
           ++G+VGLG IG  +A  L+  G  ++  SR +     A    + 
Sbjct: 2   KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLV 45

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

 Score = 37.8 bits (87), Expect = 0.001
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 158 KLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALI 216
           +   + V I G G+ +G   A RL A G  +     S + +  A  + V E A +++ L 
Sbjct: 1   RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLE-ASKAAVLETAPDAEVLT 59

Query: 217 ICCALTD-QTRRMINREVMLALGKEGIIVN 245
               ++D               G+     N
Sbjct: 60  TVADVSDEAQVEAYVTATTERFGRIDGFFN 89

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Length = 201

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 2/68 (2%)

Query: 159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYA--FYSNVCELAANSDALI 216
           L G  V + GLG +G  +A      G  +L      + V +A         L        
Sbjct: 25  LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPC 84

Query: 217 ICCALTDQ 224
              A    
Sbjct: 85  DVFAPCAM 92

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 156

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query: 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYA 200
           +V  +GLG +G  +A  L      +++N   +K + + 
Sbjct: 2   KVAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQ 39

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRS------KKPVPYAFYSNVCELAANSDALI 216
           RVG +G G +   +A RL++ G  V+ +         ++           E   +   +I
Sbjct: 2   RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVI 61

Query: 217 ICC 219
              
Sbjct: 62  SAV 64

>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643 {Thermotoga maritima [TaxId: 2336]} Length = 132

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1643
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 5/97 (5%)

Query: 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALT 222
            V I+G+GNIG ++ +                 P        + E    SD   +    +
Sbjct: 4   TVLIIGMGNIGKKLVELGNFEKIYAYDRISKDIPG----VVRLDEFQVPSDVSTVVECAS 59

Query: 223 DQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVR 259
            +  +  + +++       II++    A     E   
Sbjct: 60  PEAVKEYSLQILKN-PVNYIIISTSAFADEVFRERFF 95

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 18/90 (20%), Positives = 26/90 (28%), Gaps = 6/90 (6%)

Query: 158 KLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALI 216
           +L GK   I G    IGL +A +    G  V+   R       A       +        
Sbjct: 3   RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKA----AKSVGTPDQIQF 58

Query: 217 ICCALTD-QTRRMINREVMLALGKEGIIVN 245
                +D      +      A G    +VN
Sbjct: 59  FQHDSSDEDGWTKLFDATEKAFGPVSTLVN 88

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 15/98 (15%), Positives = 32/98 (32%)

Query: 163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALT 222
            VG+VGLG +G  +A  +   G  V   +R+         +N     A +          
Sbjct: 3   DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAF 62

Query: 223 DQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRC 260
             + +   + ++L          + +   + E   +  
Sbjct: 63  AASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILV 100

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 13/91 (14%)

Query: 158 KLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALI 216
              GK V + G    IG  +A+     G  V       +           E+A       
Sbjct: 2   LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE---------GKEVAEAIGGAF 52

Query: 217 ICCALTD--QTRRMINREVMLALGKEGIIVN 245
               L D  +  R +  E   ALG+  ++VN
Sbjct: 53  FQVDLEDERERVRFVE-EAAYALGRVDVLVN 82

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 293

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 141 FLRQGLWSKIGDYPLGSK--LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNS 191
            +   + +      LG     G K   + G GN+GL   + L  FG   +   
Sbjct: 14  GIENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVG 66

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 158 KLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALI 216
           +L  K V I G  + IG    +     G  ++     + P+         E A    A  
Sbjct: 2   RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLR--------EAAEAVGAHP 53

Query: 217 ICCALTD-QTRRMINREVMLALGKEGIIVN 245
           +   + D  +      E +  LG+   +V+
Sbjct: 54  VVMDVADPASVERGFAEALAHLGRLDGVVH 83

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.1 bits (80), Expect = 0.004
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNV 187
             L  +L  KR+ ++G G +GL    +L   GC +
Sbjct: 5   LQLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKL 39

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

 Score = 35.2 bits (81), Expect = 0.004
 Identities = 16/105 (15%), Positives = 33/105 (31%), Gaps = 7/105 (6%)

Query: 159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDAL--- 215
           + GK V I G G++G   A  ++  G  V            A       +    + +   
Sbjct: 21  ISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEG-FNVVTLDEIVDKG 79

Query: 216 -IICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVR 259
                   +    +I  E +L +    ++ N+G      +   + 
Sbjct: 80  DFFITCTGN--VDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELF 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	331
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.94
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.89
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.88
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.87
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.84
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.81
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.8
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.79
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.61
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.44
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.38
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.38
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.35
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.29
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.23
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.03
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.97
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	98.92
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	98.89
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.88
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.82
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.82
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.67
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.63
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	98.58
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.45
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.39
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.37
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.36
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.34
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.25
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.23
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.2
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.16
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.12
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.1
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.06
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	98.06
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.04
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.03
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.02
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.94
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.85
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.8
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.78
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.74
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.73
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.72
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.6
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.47
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.45
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.44
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	97.44
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.42
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.42
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.41
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.39
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.36
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.35
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.35
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.34
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.28
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.28
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.25
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.23
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.18
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.15
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.08
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	97.07
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.06
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	97.06
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.03
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	97.03
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.01
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.98
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	96.95
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.92
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.92
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.91
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	96.91
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.89
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.87
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	96.87
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	96.86
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.86
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	96.85
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.74
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.69
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.69
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	96.67
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	96.67
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.63
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.59
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	96.59
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.53
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.52
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.51
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.47
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.44
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.43
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.42
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.25
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.19
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.17
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	96.11
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	96.09
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	96.04
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	96.0
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	95.98
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.86
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	95.86
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.85
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.85
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	95.76
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.75
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.75
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.71
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.62
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	95.59
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.56
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.55
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.53
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.51
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.5
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.47
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.43
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.42
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	95.37
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.27
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.26
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.22
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.21
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	95.18
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	95.17
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	95.16
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	95.14
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.11
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	95.1
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.1
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	95.09
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.08
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.06
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.05
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.04
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.03
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.02
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	95.02
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.02
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.01
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.01
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	94.94
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	94.93
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.86
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	94.86
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	94.83
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.83
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	94.79
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.75
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	94.69
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	94.67
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	94.67
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	94.65
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.61
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.55
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.53
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.51
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	94.49
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	94.46
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.46
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.44
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	94.38
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.36
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	94.35
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.32
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	94.31
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.27
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.25
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.24
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.23
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	94.21
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	94.18
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	94.14
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.1
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	94.08
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.07
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	94.07
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	94.04
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	94.04
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	93.97
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	93.8
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	93.76
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	93.7
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	93.64
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.61
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	93.46
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	93.44
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	93.41
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	93.41
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	93.41
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	93.38
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	93.33
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	93.33
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	93.32
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	93.32
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	93.31
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	93.27
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.25
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.23
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.23
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.22
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	93.18
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	93.11
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.07
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	93.04
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	93.01
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	92.94
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.87
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	92.85
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	92.84
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	92.77
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	92.7
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	92.55
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	92.51
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	92.51
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.51
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	92.5
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	92.16
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	92.15
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	92.14
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	91.92
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	91.73
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	91.59
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	91.47
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	91.34
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	91.25
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.24
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	91.17
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	91.0
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	91.0
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	91.0
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	90.93
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	90.83
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	90.82
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.54
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.52
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	90.29
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.2
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	90.03
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.0
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	90.0
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	89.98
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.97
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	89.93
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	89.87
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	89.85
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	89.81
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	89.52
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	89.34
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	89.09
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	89.07
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	88.97
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	88.79
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	88.76
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	88.71
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	88.61
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	88.23
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	88.2
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	88.1
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	88.03
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	87.94
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.86
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	87.72
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	87.6
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	87.49
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.45
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	87.41
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	87.23
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	87.01
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	86.77
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	86.45
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	86.44
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	85.85
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.78
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	85.62
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	85.6
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	85.59
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	85.56
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	85.5
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	85.48
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	85.47
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	85.46
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	85.33
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	85.08
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	85.07
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	84.88
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	84.87
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.81
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	84.57
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	84.18
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	84.15
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.96
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.72
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	83.32
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	83.19
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	83.18
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	83.14
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	83.02
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	82.76
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	82.73
d2qwxa1	230	Quinone reductase type 2 (menadione reductase) {Hu	82.72
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	82.29
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.16
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	81.7
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	81.43
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	81.02
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	81.02
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	80.79
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	80.77
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	80.51
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	80.47
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	80.39
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	80.37

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.5e-53  Score=370.40  Aligned_cols=180  Identities=34%  Similarity=0.512  Sum_probs=167.3

Q ss_pred             ChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          116 FSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       116 ~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      |+.+||||+++++|++.|+++.+++.+++|.|...  ...+.++.|+++||+|+|.||+.+|+++++|||+|++|+++..
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~--~~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~   78 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRS--SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVS   78 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGG--GCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcc--ccccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCC
Confidence            67899999999999999999999999999999754  1247789999999999999999999999999999999998876


Q ss_pred             C----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEe
Q 020073          196 P----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGL  271 (331)
Q Consensus       196 ~----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~l  271 (331)
                      +    .......+++|++++||+|++|||+|++|+++||++.|++||+|++|||+|||++||++||++||++|+|+||+|
T Consensus        79 ~~~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~l  158 (184)
T d1ygya1          79 PARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGL  158 (184)
T ss_dssp             HHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEE
T ss_pred             hhHHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEE
Confidence            4    112235689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCCccccCCceEEcCCCC
Q 020073          272 DVFENEPYVPKELLELDNVVLQPHRA  297 (331)
Q Consensus       272 DV~~~EP~~~~~L~~~~nvilTPH~a  297 (331)
                      |||++||++++|||++|||++|||+|
T Consensus       159 DV~~~EP~~~~~l~~~~nviiTPHIG  184 (184)
T d1ygya1         159 DVFATEPCTDSPLFELAQVVVTPHLG  184 (184)
T ss_dssp             SSCSSSSCSCCGGGGCTTEEECSSCS
T ss_pred             eCCCCCCCCCchHhcCCCEEECCCCC
Confidence            99999999877999999999999997

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=2.1e-52  Score=366.35  Aligned_cols=183  Identities=29%  Similarity=0.462  Sum_probs=168.6

Q ss_pred             hHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCC-CCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          117 SDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGD-YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       117 ~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~-~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      +.+|||+++++||+++|++..+++.+|+|.|..... ...+++++|+++||||+|+||+.+|+++++|||+|.+|++...
T Consensus         2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   81 (191)
T d1gdha1           2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA   81 (191)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhcccccccccccc
Confidence            578999999999999999999999999999975322 2357899999999999999999999999999999999998766


Q ss_pred             C------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEE
Q 020073          196 P------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGA  269 (331)
Q Consensus       196 ~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga  269 (331)
                      .      .......++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++|||+||+++|++|+|+||
T Consensus        82 ~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a  161 (191)
T d1gdha1          82 SSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYA  161 (191)
T ss_dssp             CHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEE
T ss_pred             ccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEE
Confidence            4      1234467899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCCCCCccccCCceEEcCCCCCC
Q 020073          270 GLDVFENEPYVPKELLELDNVVLQPHRAVF  299 (331)
Q Consensus       270 ~lDV~~~EP~~~~~L~~~~nvilTPH~a~~  299 (331)
                      +||||++||.++++||++|||++|||+|++
T Consensus       162 ~lDV~~~EP~~~~~l~~~~nvi~TPHiasa  191 (191)
T d1gdha1         162 GFDVFAGEPNINEGYYDLPNTFLFPHIGSA  191 (191)
T ss_dssp             EESCCTTTTSCCTTGGGCTTEEECSSCTTC
T ss_pred             EEECCCCCCCCCchHHcCCCEEECCccccC
Confidence            999999999777799999999999999985

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=1.7e-51  Score=360.97  Aligned_cols=181  Identities=29%  Similarity=0.508  Sum_probs=166.5

Q ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCC-----CCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECC
Q 020073          118 DDAADAAVGLLIDVWRKISSADRFLRQGLWSKIG-----DYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSR  192 (331)
Q Consensus       118 ~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~-----~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~  192 (331)
                      ++|||++++++|+++|++...++.+|+|.|.+..     ....+.+|+|+|+||||+|+||+.+|+++++|||+|++|++
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~   80 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP   80 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccC
Confidence            5899999999999999999999999999997531     12357899999999999999999999999999999999999


Q ss_pred             CCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          193 SKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       193 ~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      ....     .+.....++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||+++|++|+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~  160 (193)
T d1mx3a1          81 YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR  160 (193)
T ss_dssp             TSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred             cccccchhhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCce
Confidence            8655     23445678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCCCCCCCC--CccccCCceEEcCCCCC
Q 020073          268 GAGLDVFENEPYVP--KELLELDNVVLQPHRAV  298 (331)
Q Consensus       268 ga~lDV~~~EP~~~--~~L~~~~nvilTPH~a~  298 (331)
                      ||+||||++||.+.  +|||++|||++|||+|+
T Consensus       161 ~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~  193 (193)
T d1mx3a1         161 GAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  193 (193)
T ss_dssp             EEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             EEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence            99999999999763  48999999999999986

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=1.5e-51  Score=363.29  Aligned_cols=182  Identities=29%  Similarity=0.445  Sum_probs=166.4

Q ss_pred             hHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          117 SDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       117 ~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      .++||||+++++|++.|++..+++.+++|.|..... ..+++|.|+||||||+|+||+.+|+++++|||+|++||++...
T Consensus         2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~-~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   80 (199)
T d1dxya1           2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGT-FIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMK   80 (199)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTC-CCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccC-cccccccceeeeeeecccccccccccccccceeeeccCCccch
Confidence            468999999999999999999999999999975432 3578999999999999999999999999999999999997655


Q ss_pred             --CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecC
Q 020073          197 --VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVF  274 (331)
Q Consensus       197 --~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~  274 (331)
                        .......++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||+++|++|+|+||+||||
T Consensus        81 ~~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV~  160 (199)
T d1dxya1          81 GDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTY  160 (199)
T ss_dssp             SCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSC
T ss_pred             hhhcchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEecccc
Confidence              222345689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC----------C----CccccCCceEEcCCCCCC
Q 020073          275 ENEPYV----------P----KELLELDNVVLQPHRAVF  299 (331)
Q Consensus       275 ~~EP~~----------~----~~L~~~~nvilTPH~a~~  299 (331)
                      ++||.+          .    ++||.+|||++|||+|||
T Consensus       161 ~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy  199 (199)
T d1dxya1         161 EYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  199 (199)
T ss_dssp             TTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             CCCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence            999952          1    368899999999999997

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=3.4e-51  Score=358.10  Aligned_cols=181  Identities=25%  Similarity=0.413  Sum_probs=167.0

Q ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-
Q 020073          118 DDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-  196 (331)
Q Consensus       118 ~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-  196 (331)
                      .+||||+++++|+++|++..++..+++|.|........+.++.|+++||||+|+||+.+|+++++|||+|.+|++...+ 
T Consensus         1 isVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~   80 (188)
T d2naca1           1 ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPE   80 (188)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCH
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeeccccc
Confidence            3899999999999999999999999999997532233467899999999999999999999999999999999987655 


Q ss_pred             -----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEe
Q 020073          197 -----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGL  271 (331)
Q Consensus       197 -----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~l  271 (331)
                           .+.....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||+|
T Consensus        81 ~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~l  160 (188)
T d2naca1          81 SVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAG  160 (188)
T ss_dssp             HHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEE
T ss_pred             cccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEE
Confidence                 234456799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCC-ccccCCceEEcCCCCC
Q 020073          272 DVFENEPYVPK-ELLELDNVVLQPHRAV  298 (331)
Q Consensus       272 DV~~~EP~~~~-~L~~~~nvilTPH~a~  298 (331)
                      |||++||.+.+ |||++||+++|||+||
T Consensus       161 DV~~~EP~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d2naca1         161 DVWFPQPAPKDHPWRTMPYNGMTPHISG  188 (188)
T ss_dssp             SCCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred             eCCCCCCCCCCChHHcCCCeEEccccCc
Confidence            99999998754 8999999999999997

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.1e-50  Score=352.00  Aligned_cols=181  Identities=25%  Similarity=0.405  Sum_probs=158.8

Q ss_pred             ChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          116 FSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       116 ~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      |+++||||+++++|+++|+++.++..+++|.|.+.  ...+.++.|++|||||+|.||+.+|+++++|||+|++|++...
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~--~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKL--AAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENK   78 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCccc--ccccccccceEEEEeecccchhhhhhhcccccceEeecccccc
Confidence            68999999999999999999999999999999754  2346789999999999999999999999999999999998765


Q ss_pred             C--CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeec
Q 020073          196 P--VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDV  273 (331)
Q Consensus       196 ~--~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV  273 (331)
                      .  .......+++|++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||+++|++|++.||+|||
T Consensus        79 ~~~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV  158 (188)
T d1sc6a1          79 LPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDV  158 (188)
T ss_dssp             CCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC
T ss_pred             chhhhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEec
Confidence            4  33344578999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC-----CccccCCceEEcCCCCC
Q 020073          274 FENEPYVP-----KELLELDNVVLQPHRAV  298 (331)
Q Consensus       274 ~~~EP~~~-----~~L~~~~nvilTPH~a~  298 (331)
                      |++||...     +|||++|||++|||+||
T Consensus       159 ~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d1sc6a1         159 FPTEPATNSDPFTSPLAEFDNVLLTPHIGG  188 (188)
T ss_dssp             ---------CTTTGGGTTCTTEEEECCCSC
T ss_pred             CCCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence            99999732     37999999999999997

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=3.9e-50  Score=349.01  Aligned_cols=179  Identities=27%  Similarity=0.396  Sum_probs=164.4

Q ss_pred             hHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          117 SDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       117 ~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      +++||||+++++|+++|++..+++.+++|+|.+..   ...++.|++|||||+|.||+.+|+++++|||+|++|++++..
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~---~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~   77 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV---EIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE   77 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS---CCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC---CCCcccCceEEEeccccccccceeeeeccccccccccccccc
Confidence            57999999999999999999999999999997642   224699999999999999999999999999999999998766


Q ss_pred             CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCC
Q 020073          197 VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFEN  276 (331)
Q Consensus       197 ~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~  276 (331)
                      .......++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||+++|++|++.||++|||+.
T Consensus        78 ~~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV~~~  157 (181)
T d1qp8a1          78 GPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWG  157 (181)
T ss_dssp             SSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTT
T ss_pred             cceeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEecCCC
Confidence            44445678999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCC-CCC-ccccCCceEEcCCCCC
Q 020073          277 EPY-VPK-ELLELDNVVLQPHRAV  298 (331)
Q Consensus       277 EP~-~~~-~L~~~~nvilTPH~a~  298 (331)
                      ||+ +.+ ||+.+|||++|||+||
T Consensus       158 e~p~~~~~~l~~~~nvi~TPHiaG  181 (181)
T d1qp8a1         158 RNDFAKDAEFFSLPNVVATPWVAG  181 (181)
T ss_dssp             TTCCGGGHHHHTSTTEEECCSCSS
T ss_pred             CCCCCCCChHHcCCCEEeccccCc
Confidence            764 333 8999999999999997

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=3.8e-50  Score=353.40  Aligned_cols=179  Identities=24%  Similarity=0.376  Sum_probs=163.1

Q ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-
Q 020073          118 DDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-  196 (331)
Q Consensus       118 ~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-  196 (331)
                      ++||||+++++|+++|+++.+++.+++|.|...  ...|++|+|+||||||+|+||+.+|+++++|||+|++||+...+ 
T Consensus         2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~--~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~   79 (197)
T d1j4aa1           2 NAIAEHAAIQAARILRQDKAMDEKVARHDLRWA--PTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE   79 (197)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCT--TCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH
T ss_pred             CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcC--CCcCccccCCeEEEecccccchhHHHhHhhhcccccccCcccccc
Confidence            689999999999999999999999999987643  23588999999999999999999999999999999999987654 


Q ss_pred             --CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecC
Q 020073          197 --VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVF  274 (331)
Q Consensus       197 --~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~  274 (331)
                        .......++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|+||+||||
T Consensus        80 ~~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~  159 (197)
T d1j4aa1          80 LEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVY  159 (197)
T ss_dssp             HHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             cccceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeecc
Confidence              222345789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC--------------CccccCCceEEcCCCCC
Q 020073          275 ENEPYVP--------------KELLELDNVVLQPHRAV  298 (331)
Q Consensus       275 ~~EP~~~--------------~~L~~~~nvilTPH~a~  298 (331)
                      ++||...              ++||.+|||++|||+|+
T Consensus       160 ~~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~  197 (197)
T d1j4aa1         160 EGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF  197 (197)
T ss_dssp             TTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred             ccCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence            9997421              25899999999999985

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=1.8e-27  Score=194.85  Aligned_cols=129  Identities=19%  Similarity=0.296  Sum_probs=112.2

Q ss_pred             CCCeEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCC
Q 020073           14 HLPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAG   93 (331)
Q Consensus        14 ~k~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G   93 (331)
                      +|||||++++.  ++...+. |++.|++... ... +.+ .+.+.++++|++++++.+++++++++++|+||+|+++|+|
T Consensus         1 sMpkvli~~~~--~~~~~~~-L~~~~~v~~~-~~~-~~~-el~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~g~G   74 (130)
T d1ygya2           1 SLPVVLIADKL--APSTVAA-LGDQVEVRWV-DGP-DRD-KLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVG   74 (130)
T ss_dssp             CCCEEEECSSC--CGGGGTT-SCSSSEEEEC-CTT-SHH-HHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSC
T ss_pred             CCCEEEEECCC--CHHHHHH-HhCCcEEEEC-CCC-CHH-HHHHHcCCCEEEEEcCcccchHHHHhhcccceEEeeeccc
Confidence            57999999977  6888888 9999987543 222 233 4455668999999887889999999999999999999999


Q ss_pred             CCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcc
Q 020073           94 VNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWS  148 (331)
Q Consensus        94 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~  148 (331)
                      |||||+++|+++||.|+|+||+++.+|||+++++||+++|++..+++.+|+|.|.
T Consensus        75 ~d~IDl~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~~  129 (130)
T d1ygya2          75 LDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVNV  129 (130)
T ss_dssp             CTTBCHHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCSC
T ss_pred             ccchhHHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhcccCccC
Confidence            9999999999999999999999999999999999999999999887777777763

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.89  E-value=2.1e-23  Score=170.13  Aligned_cols=116  Identities=20%  Similarity=0.269  Sum_probs=96.2

Q ss_pred             CCeEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCC-CceEEEEccCC
Q 020073           15 LPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLP-KLRLVVTASAG   93 (331)
Q Consensus        15 k~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p-~Lk~I~~~~~G   93 (331)
                      |||||++.+.  ++...++ |++.|+++.....+....+.+.+.++++|++++++..++++++|+++| +||+|+++|+|
T Consensus         1 K~kVlit~~~--~~~~~~~-l~~~~~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gvG   77 (129)
T d1gdha2           1 KKKILITWPL--PEAAMAR-ARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIG   77 (129)
T ss_dssp             CCEEEESSCC--CHHHHHH-HHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSC
T ss_pred             CCEEEEeCCC--CHHHHHH-HHcCCcEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeeeecccC
Confidence            7999999987  6788888 999999765433222223445566689999998888899999999997 79999999999


Q ss_pred             CCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHh
Q 020073           94 VNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWR  133 (331)
Q Consensus        94 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r  133 (331)
                      +||||+++|+++||+|+|+||+++++|||+++++|+.+.+
T Consensus        78 ~d~ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~  117 (129)
T d1gdha2          78 FDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDA  117 (129)
T ss_dssp             CTTBCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHHH
T ss_pred             CccccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999977665554443

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=5.9e-23  Score=168.01  Aligned_cols=121  Identities=16%  Similarity=0.142  Sum_probs=97.8

Q ss_pred             CCCeEEEECCCCCCchHHHHHHhccCc-EEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccC
Q 020073           14 HLPRVLVIKPPPPLTLFGDKFISRSFQ-LLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASA   92 (331)
Q Consensus        14 ~k~~vl~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~   92 (331)
                      .|+|||++++.  ++...+. |++.+. .+.......+ ++.+.+.++++|++++.+..++++++|+++|+||+|+++|+
T Consensus         3 ~kmKILv~d~i--~~~a~~~-L~~~g~~~v~~~~~~~~-~~~l~~~~~~~d~ii~~~~~~i~~~~i~~~p~Lk~I~~~gv   78 (132)
T d1sc6a2           3 DKIKFLLVEGV--HQKALES-LRAAGYTNIEFHKGALD-DEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAI   78 (132)
T ss_dssp             SSCCEEECSCC--CHHHHHH-HHHTTCCCEEECSSCCC-HHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSS
T ss_pred             CCCEEEEECCC--CHHHHHH-HHhCCCEEEEeCCCCCC-HHHHHHhhcCCcEEEEecccccChhhhhccccceeEEEecc
Confidence            46799999987  7888888 887743 3443333333 34556677899999987788999999999999999999999


Q ss_pred             CCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHH
Q 020073           93 GVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADR  140 (331)
Q Consensus        93 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~  140 (331)
                      ||||||+++|+++||.|+|+|++++.+|||++++||++  |.+..++.
T Consensus        79 G~D~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~~--~~~~~~d~  124 (132)
T d1sc6a2          79 GTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAG--KLIKYSDN  124 (132)
T ss_dssp             CCTTBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHHH--HHHHHHHH
T ss_pred             cccccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHHH--HhhHHHhC
Confidence            99999999999999999999999999999987666544  44444443

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.87  E-value=1.7e-24  Score=174.76  Aligned_cols=120  Identities=18%  Similarity=0.260  Sum_probs=103.9

Q ss_pred             eEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCCCC
Q 020073           17 RVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGVNH   96 (331)
Q Consensus        17 ~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~   96 (331)
                      ||++..+.  ++++.+. |++.++++..  .+          ..++|+++++   +++++.++++|+||||++.|+|+||
T Consensus         2 ki~v~~~l--p~e~~e~-L~~~~~v~~~--~d----------~~~~d~~l~~---~~~~~~l~~~~~Lk~i~~~~aG~D~   63 (121)
T d1qp8a2           2 ELYVNFEL--PPEAEEE-LRKYFKIVRG--GD----------LGNVEAALVS---RITAEELAKMPRLKFIQVVTAGLDH   63 (121)
T ss_dssp             EEECCSCC--CHHHHHH-HHTTCEEECS--SC----------CTTBCCCCBS---CCCHHHHHHCTTCCCEEBSSSCCTT
T ss_pred             EEEEeCCC--CHHHHHH-hhhcceEeec--cc----------ccccceeeee---ccCHHHHhcCCCceEEEecccCcCC
Confidence            58888877  6788888 9998876541  11          2577887764   6999999999999999999999999


Q ss_pred             CChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHH
Q 020073           97 IHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQV  176 (331)
Q Consensus        97 id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~  176 (331)
                      +|++.++ +||.|+|++|+++.+||||+++++|++.|+                             ++|+|+|+||+++
T Consensus        64 i~~~~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r~-----------------------------l~i~G~G~iG~~i  113 (121)
T d1qp8a2          64 LPWESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVRN-----------------------------LITYATGGRPRNI  113 (121)
T ss_dssp             SCCTTSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHHH-----------------------------HHHHHTTSCCSCB
T ss_pred             CCHHHhc-cCeEEEECCCCChHHHHHHHHHHHHHhcCC-----------------------------EEEEcCCHHHHHH
Confidence            9999985 699999999999999999999999998873                             6899999999999


Q ss_pred             HHHHhhCC
Q 020073          177 AKRLQAFG  184 (331)
Q Consensus       177 A~~l~~~G  184 (331)
                      |+++++||
T Consensus       114 A~r~~a~G  121 (121)
T d1qp8a2         114 AKREDYIG  121 (121)
T ss_dssp             CCGGGTC-
T ss_pred             HHHHHhcC
Confidence            99999997

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.84  E-value=4.1e-22  Score=162.82  Aligned_cols=119  Identities=10%  Similarity=0.161  Sum_probs=93.7

Q ss_pred             eEEEECCCCCCchHHHHHHhcc--CcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCC--CceEEEEccC
Q 020073           17 RVLVIKPPPPLTLFGDKFISRS--FQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLP--KLRLVVTASA   92 (331)
Q Consensus        17 ~vl~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p--~Lk~I~~~~~   92 (331)
                      ||++++..+...+++++ +.+.  +++.. .+....  +.+.+.++++|+|++.+..++++++|+++|  +||+|+++|+
T Consensus         2 KIl~~~~~~~e~~~l~~-~~~~~~~~v~~-~~~~~~--~~~~~~~~~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~~v   77 (131)
T d1dxya2           2 KIIAYGARVDEIQYFKQ-WAKDTGNTLEY-HTEFLD--ENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNV   77 (131)
T ss_dssp             EEEECSCCTTTHHHHHH-HHHHHCCEEEE-CSSCCC--TTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSS
T ss_pred             EEEEEecCcCcHHHHHH-HHHHcCeEEEE-cCCCCC--HHHHHHhcCCCEEEEecCCCCCHHHHhhcccCCeEEEEEccc
Confidence            58887644334556666 5443  44433 322211  223445689999998888899999999865  8999999999


Q ss_pred             CCCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHH
Q 020073           93 GVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSAD  139 (331)
Q Consensus        93 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~  139 (331)
                      |+||||+++|+++||.|+|+|++++++|||++++++|++.|++...+
T Consensus        78 G~d~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~~  124 (131)
T d1dxya2          78 GTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGE  124 (131)
T ss_dssp             CCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             ccccccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHHH
Confidence            99999999999999999999999999999999999999999987654

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.81  E-value=1.4e-20  Score=153.72  Aligned_cols=126  Identities=16%  Similarity=0.154  Sum_probs=97.4

Q ss_pred             CCeEEEECCCCCCchHHHHHHhccCcEEEeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCCCceEEEEccCCC
Q 020073           15 LPRVLVIKPPPPLTLFGDKFISRSFQLLKAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLPKLRLVVTASAGV   94 (331)
Q Consensus        15 k~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~~G~   94 (331)
                      +|+|++++.....-+ +.. |++..++.. .+...+ ++...+.+.++|++++++.+++++++|+++|+||+|+++|+|+
T Consensus         1 mP~v~~ld~~d~~~e-~~~-L~~~~~v~~-~~~~s~-~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~~~Lk~I~~~g~G~   76 (133)
T d1mx3a2           1 MPLVALLDGRDCTVE-MPI-LKDVATVAF-CDAQST-QEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGF   76 (133)
T ss_dssp             CCEEEESSCSCCTTT-HHH-HTTTCEEEE-CCCSSG-GGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSCC
T ss_pred             CCEEEEecCCcchhh-HHH-hcccceEEE-ecCCCh-HHHHHHHhccCcEEEEEeCCCcCHHHHhhCCCCeEEEEcCCCc
Confidence            488999986522122 334 777776544 332221 2222233346788888888899999999999999999999999


Q ss_pred             CCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCCccc
Q 020073           95 NHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK  149 (331)
Q Consensus        95 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~  149 (331)
                      ||||+++|+++||.|+|+||++. ++|||+++++|++.|++++..    +|+|+.
T Consensus        77 d~iD~~~~~~~gI~v~n~p~~~~-~vAE~a~~lil~~~R~i~~a~----~g~~~~  126 (133)
T d1mx3a2          77 DNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRAI----TGRIPD  126 (133)
T ss_dssp             TTBCHHHHHHTTCEEECCCSTTH-CCHHHHHHHHHHHHHHHHHHH----HSCTTT
T ss_pred             ccEeeeeheeCCEEEEcCCCCCc-hhHHHHHHHHHHHHhhHHHHH----hccccc
Confidence            99999999999999999999987 579999999999999998764    577764

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.80  E-value=1.2e-20  Score=154.50  Aligned_cols=118  Identities=11%  Similarity=0.102  Sum_probs=90.3

Q ss_pred             eEEEECCCCCCchHHHHHHhccCcEE-EeccCCccHHHHHHhhcCCeeEEEEeCCCCCCHHHHhcCC--CceEEEEccCC
Q 020073           17 RVLVIKPPPPLTLFGDKFISRSFQLL-KAYESSLSLEQFLISHAHSIEAILCSGDSPVTLDILRLLP--KLRLVVTASAG   93 (331)
Q Consensus        17 ~vl~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~l~~~p--~Lk~I~~~~~G   93 (331)
                      ||++.+..+....+.++++++.+++. ...+...+  +.+.+.++++|+|++++..++++++++++|  +||+|++.|+|
T Consensus         2 KI~~f~~~~~e~~~~e~~~~~~~~v~v~~~~~~~~--~e~~~~~~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~vG   79 (134)
T d1j4aa2           2 KIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKLLT--PETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVG   79 (134)
T ss_dssp             EEEECSCCGGGHHHHHHHHHTCTTSEEEECSSCCC--TTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred             eEEEEecccccHHHHHHHHHhCCCEEEEECCCCCC--HHHHHHhcCCCEEEEecCCCcCHHHHhhhcccCeeEEEEccCC
Confidence            78888765434445656244555542 22222221  234556789999999888899999999765  79999999999


Q ss_pred             CCCCChhHHhhCCcEEEeCCCCChHHHHHHHHHHHHHHHhchHHHH
Q 020073           94 VNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSAD  139 (331)
Q Consensus        94 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~l~L~~~r~~~~~~  139 (331)
                      |||||+++|+++||.|+|+|++   ++||+++++||+++|++....
T Consensus        80 ~d~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~~~~  122 (134)
T d1j4aa2          80 VDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNNLEL  122 (134)
T ss_dssp             CTTBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHHHHH
T ss_pred             cCccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHhHHH
Confidence            9999999999999999999987   589999999999999875543

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.79  E-value=2e-20  Score=158.83  Aligned_cols=114  Identities=15%  Similarity=0.165  Sum_probs=93.5

Q ss_pred             HHHhcc-CcEEEeccCCccHHHHHHhhcCCeeEEEEeC--CCCCCHHHHhcCCCceEEEEccCCCCCCChhHHhhCCcEE
Q 020073           33 KFISRS-FQLLKAYESSLSLEQFLISHAHSIEAILCSG--DSPVTLDILRLLPKLRLVVTASAGVNHIHMPECRRRGIAV  109 (331)
Q Consensus        33 ~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~d~ii~~~--~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v  109 (331)
                      ++|+++ ++++...+.+.+. +.+.+.+.++|+++++.  ..++++|+|+++|+||+|+++|+|+||||+++|+++||.|
T Consensus        61 ~~Le~~GhelV~~sd~~~~~-~el~k~l~DADivI~~pf~~~~lt~e~i~~ap~LKlI~~~g~G~D~VDl~aa~e~gI~V  139 (186)
T d2naca2          61 KYLESNGHTLVVTSDKDGPD-SVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTV  139 (186)
T ss_dssp             HHHHHTTCEEEEESCCSSTT-SHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEE
T ss_pred             HHHHHCCCEEEEecCCCCCh-HHHHhhcccCCEEEEecccccccCHHHHhcCccceEEEEeccCCccccHHHHHhCCCEE
Confidence            336655 5666544444332 33455668999999863  5789999999999999999999999999999999999999


Q ss_pred             EeCCCCChHHHHHHH--------HHHHHHHHhchHHHHHHHHcCCc
Q 020073          110 ANAGSIFSDDAADAA--------VGLLIDVWRKISSADRFLRQGLW  147 (331)
Q Consensus       110 ~n~~~~~~~~vAE~a--------l~l~L~~~r~~~~~~~~~~~g~w  147 (331)
                      +|+||+|+.+||||+        +.+++...|++...+..+++|+|
T Consensus       140 ~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~  185 (186)
T d2naca2         140 AEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL  185 (186)
T ss_dssp             EECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred             EECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccc
Confidence            999999999999999        77888888888877777777777

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3e-16  Score=131.26  Aligned_cols=114  Identities=17%  Similarity=0.227  Sum_probs=92.3

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      ..|.||+++|+|+|.||+.+|+++++||++|++++..+.+     .......++++++..+|+++++.    .++++|++
T Consensus        20 ~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvtaT----Gn~~vI~~   95 (163)
T d1li4a1          20 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTT----GCIDIILG   95 (163)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECS----SCSCSBCH
T ss_pred             ceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEecC----CCccchhH
Confidence            4589999999999999999999999999999999987754     12233568999999999998874    36789999


Q ss_pred             HHHhcCCCCcEEEEcC-CCCccCHHHHHHHHHhCCceEEEeecC
Q 020073          232 EVMLALGKEGIIVNVG-RGAVIDENEMVRCLVRGEIAGAGLDVF  274 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~s-rg~~vd~~al~~aL~~~~i~ga~lDV~  274 (331)
                      ++|++||+|+++.|++ +..-+|-++|.+...+.+.....+|.|
T Consensus        96 eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y  139 (163)
T d1li4a1          96 RHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRY  139 (163)
T ss_dssp             HHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEE
T ss_pred             HHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEE
Confidence            9999999999999986 566799999987554443333444443

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.44  E-value=9.5e-14  Score=116.06  Aligned_cols=110  Identities=17%  Similarity=0.275  Sum_probs=95.4

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc--HHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN--REV  233 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~--~~~  233 (331)
                      .+|||||+|.||+.+|++|...|++|++|||++++      .+.....+..|++++||+|++|+|..++++.++.  ...
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            37999999999999999999999999999998765      3344567899999999999999999999888762  457


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeec
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDV  273 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV  273 (331)
                      +..+++|.++|+++....-....+.+.+.+..+.  .+|.
T Consensus        81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda  118 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVE--MLDA  118 (161)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred             hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--eecc
Confidence            8889999999999999998889999999998886  3553

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.38  E-value=2.2e-12  Score=107.67  Aligned_cols=136  Identities=18%  Similarity=0.218  Sum_probs=94.8

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCc-cccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPY-AFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~-~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      ++|||||+|.||+.+|+.|+..|.+|++|||+.+.      .+. ....+..+.+++||+|++++|. ..+..++ .+..
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~-~~~~~vl-~~l~   78 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPI-QLILPTL-EKLI   78 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCH-HHHHHHH-HHHG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcH-hhhhhhh-hhhh
Confidence            47999999999999999999999999999998643      121 1223445688999999999994 4677777 4577


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCC-CCC-CCccccCCceEEcCCCCCCc
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENE-PYV-PKELLELDNVVLQPHRAVFT  300 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~E-P~~-~~~L~~~~nvilTPH~a~~t  300 (331)
                      ..+++++++++++......... ...+...-+..-.+...+.. |.. .+.|+....+++||+-++..
T Consensus        79 ~~l~~~~iv~~~~s~~~~~~~~-~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~  145 (165)
T d2f1ka2          79 PHLSPTAIVTDVASVKTAIAEP-ASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDP  145 (165)
T ss_dssp             GGSCTTCEEEECCSCCHHHHHH-HHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCH
T ss_pred             hhcccccceeeccccchHHHHH-HHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCCH
Confidence            8899999999998766444443 34444444433333222222 211 13588888899999876543

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.38  E-value=6.2e-13  Score=110.36  Aligned_cols=98  Identities=22%  Similarity=0.325  Sum_probs=82.8

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHH
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINRE  232 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~  232 (331)
                      .+.||++.|+|||.+|+.+|++++++|++|+++...|-.     .......+++++++.+|+++.++..    .++|+.+
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~~~~~a~~~aDi~vTaTGn----~~vI~~~   95 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGN----VDVIKLE   95 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCSS----SSSBCHH
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCccCchhHccccCcEEEEcCCC----CccccHH
Confidence            489999999999999999999999999999999887643     2223357899999999999998753    3589999


Q ss_pred             HHhcCCCCcEEEEcCCCCc-cCHHHHHH
Q 020073          233 VMLALGKEGIIVNVGRGAV-IDENEMVR  259 (331)
Q Consensus       233 ~l~~mk~ga~lIn~srg~~-vd~~al~~  259 (331)
                      +|.+||+|+++.|+++-.. +|-++|.+
T Consensus        96 h~~~MKdgaIl~N~GHfd~EIdv~~L~~  123 (163)
T d1v8ba1          96 HLLKMKNNAVVGNIGHFDDEIQVNELFN  123 (163)
T ss_dssp             HHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             HHHHhhCCeEEEeccccchhhhhHHHHh
Confidence            9999999999999998765 56666553

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.35  E-value=1.2e-12  Score=109.31  Aligned_cols=110  Identities=13%  Similarity=0.189  Sum_probs=95.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhc--cHHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMI--NREV  233 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li--~~~~  233 (331)
                      ++|||||+|.||.++|++|...|++|.+|||+++.      .+.....++.+++..+|+|++|+|..+..+.++  ....
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~   81 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   81 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence            58999999999999999999999999999998654      334445789999999999999999988877765  2446


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeec
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDV  273 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV  273 (331)
                      +..+++|.++||++....-+...+.+.+.+..+.  .+|.
T Consensus        82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~--~~da  119 (162)
T d3cuma2          82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  119 (162)
T ss_dssp             HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCc--EEec
Confidence            7789999999999999999999999999998885  4565

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.29  E-value=1.8e-11  Score=102.29  Aligned_cols=135  Identities=16%  Similarity=0.206  Sum_probs=99.4

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC------CCc--cccCCHHh-hhcCCCEEEEeccCChhhhhhcc
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP------VPY--AFYSNVCE-LAANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~------~~~--~~~~~l~e-ll~~aDiV~l~~P~t~~t~~li~  230 (331)
                      |+|+|||+|.||.++|+.|+..|.  +|++||++.+.      .+.  ....+.++ ....+|+|++|+|. ..+..++ 
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~-~~~~~vl-   79 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIA-   79 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCH-HHHHHHH-
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCc-hhhhhhh-
Confidence            579999999999999999998775  79999987643      111  22334444 44689999999994 3555566 


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCC-CCC-CCccccCCceEEcCCCCC
Q 020073          231 REVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENE-PYV-PKELLELDNVVLQPHRAV  298 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~E-P~~-~~~L~~~~nvilTPH~a~  298 (331)
                      .+....++++.++++++.....-.+++.+.+...-+.+--+...+.. |.. ...|+...++++|||-..
T Consensus        80 ~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~  149 (171)
T d2g5ca2          80 KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKT  149 (171)
T ss_dssp             HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSS
T ss_pred             hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCCC
Confidence            44667789999999999987777777888787765666555554432 222 236999999999998774

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.23  E-value=1.1e-11  Score=104.72  Aligned_cols=110  Identities=15%  Similarity=0.159  Sum_probs=92.7

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C--------CccccCCHHhhhcCCCEEEEeccCChhhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V--------PYAFYSNVCELAANSDALIICCALTDQTR  226 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~--------~~~~~~~l~ell~~aDiV~l~~P~t~~t~  226 (331)
                      -++|||||+|.||..||++|...|++|++|||++++      .        +.....++.+.+..+|++++++|..+.+.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~   81 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD   81 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence            368999999999999999999999999999998754      1        11123456678899999999999998888


Q ss_pred             hhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeec
Q 020073          227 RMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDV  273 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV  273 (331)
                      ..+ ...+..+++|.++||++....-+...+.+.+.+..+.  .+|.
T Consensus        82 ~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~--~lda  125 (176)
T d2pgda2          82 NFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL--FVGS  125 (176)
T ss_dssp             HHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEE
T ss_pred             HHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCc--eecc
Confidence            765 5688889999999999999999999999999998886  4564

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.03  E-value=1.7e-10  Score=95.37  Aligned_cols=107  Identities=17%  Similarity=0.197  Sum_probs=85.2

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLAL  237 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~m  237 (331)
                      +||+||+|.||..+|++|...|..+ +|+++..+     .......+..+.+.++|++++++|...+..... ...+..+
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~-~~l~~~~   79 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVA-EALYPYL   79 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTTC
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhh-ccccccc
Confidence            6999999999999999999888765 56665543     111122344567778999999999888777654 6688899


Q ss_pred             CCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeec
Q 020073          238 GKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDV  273 (331)
Q Consensus       238 k~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV  273 (331)
                      +++.++||++....-....+.+.+++..+.  .+|.
T Consensus        80 ~~~~~iid~sT~~p~~~~~~~~~~~~~gi~--~lda  113 (156)
T d2cvza2          80 REGTYWVDATSGEPEASRRLAERLREKGVT--YLDA  113 (156)
T ss_dssp             CTTEEEEECSCCCHHHHHHHHHHHHTTTEE--EEEC
T ss_pred             cccccccccccCCHHHHHHHHHHHHHcCCe--EEec
Confidence            999999999999999999999999998886  4564

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.97  E-value=3e-10  Score=93.29  Aligned_cols=100  Identities=18%  Similarity=0.214  Sum_probs=75.9

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML  235 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~  235 (331)
                      .+|||||+|.||+.+|+.|...|++|.++++.+.+      .+.....+++|++++||+|++|+|...... .+ .....
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~-~~-~~~~~   78 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALG-AA-RRAGR   78 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHH-HH-HHHHT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHH-HH-Hhhcc
Confidence            37999999999999999999999999999887654      122234678999999999999999765433 22 12222


Q ss_pred             cCCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073          236 ALGKEGIIVNVGRGAVIDENEMVRCLVRGE  265 (331)
Q Consensus       236 ~mk~ga~lIn~srg~~vd~~al~~aL~~~~  265 (331)
                        ..+..+|+++......-..+.+.+++..
T Consensus        79 --~~~~~~id~st~~p~~~~~l~~~~~~~~  106 (152)
T d1i36a2          79 --HVRGIYVDINNISPETVRMASSLIEKGG  106 (152)
T ss_dssp             --TCCSEEEECSCCCHHHHHHHHHHCSSSE
T ss_pred             --cCCceeeccCcCCHHHHHHHHHHHhccC
Confidence              2367899999888777788888776543

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.92  E-value=3.5e-09  Score=86.57  Aligned_cols=94  Identities=18%  Similarity=0.191  Sum_probs=74.0

Q ss_pred             CCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcC
Q 020073          159 LGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLAL  237 (331)
Q Consensus       159 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~m  237 (331)
                      ..-++|+||| +|.||+.+|++|+..|++|.+||+...       .+.++.+..+|++++++|.. .+... -.+.+..+
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~v-~~~~~~~~   77 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW-------AVAESILANADVVIVSVPIN-LTLET-IERLKPYL   77 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG-------GGHHHHHTTCSEEEECSCGG-GHHHH-HHHHGGGC
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc-------cccchhhhhccccccccchh-hheee-eecccccc
Confidence            4567999999 999999999999999999999998653       34567889999999999854 34433 46788889


Q ss_pred             CCCcEEEEcCCCCccCHHHHHHHH
Q 020073          238 GKEGIIVNVGRGAVIDENEMVRCL  261 (331)
Q Consensus       238 k~ga~lIn~srg~~vd~~al~~aL  261 (331)
                      ++++++++++.-+.--.+++.+.+
T Consensus        78 ~~~~iiiD~~Svk~~~~~~~~~~~  101 (152)
T d2pv7a2          78 TENMLLADLTSVKREPLAKMLEVH  101 (152)
T ss_dssp             CTTSEEEECCSCCHHHHHHHHHHC
T ss_pred             cCCceEEEecccCHHHHHHHHHHc
Confidence            999999999976544344444433

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.89  E-value=9.3e-10  Score=92.45  Aligned_cols=113  Identities=19%  Similarity=0.264  Sum_probs=89.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CC--------ccccCCH---HhhhcCCCEEEEeccCChh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VP--------YAFYSNV---CELAANSDALIICCALTDQ  224 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~--------~~~~~~l---~ell~~aDiV~l~~P~t~~  224 (331)
                      ++|||||+|.||..+|++|...|++|++|||++++      ..        .....+.   -..+..++.++.+++....
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence            47999999999999999999999999999997654      00        0112233   3456789999999998877


Q ss_pred             hhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCC
Q 020073          225 TRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFE  275 (331)
Q Consensus       225 t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~  275 (331)
                      ....+ ......++++.++||++....-+...+.+.|.+..+...-.-|+.
T Consensus        82 ~~~~~-~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g  131 (178)
T d1pgja2          82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG  131 (178)
T ss_dssp             HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEES
T ss_pred             hhhhh-hhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccC
Confidence            77766 456777899999999999999999999999998888644333443

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.88  E-value=2.6e-09  Score=87.76  Aligned_cols=95  Identities=16%  Similarity=0.269  Sum_probs=76.0

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      ++|||||+|+||+++++.|...|.+|++++|+.++       .+.....+.++++.+||+|++|++.. ..     .+.+
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavkp~-~~-----~~vl   74 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKPQ-LF-----ETVL   74 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCGG-GH-----HHHH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecchH-hH-----HHHh
Confidence            37999999999999999999999999999988654       24445578999999999999999622 22     4557


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRG  264 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~  264 (331)
                      +.++++..+|++.-|  +..+.|.+.|..+
T Consensus        75 ~~l~~~~~iis~~ag--i~~~~l~~~l~~~  102 (152)
T d2ahra2          75 KPLHFKQPIISMAAG--ISLQRLATFVGQD  102 (152)
T ss_dssp             TTSCCCSCEEECCTT--CCHHHHHHHHCTT
T ss_pred             hhcccceeEeccccc--ccHHHHHhhhccc
Confidence            788999999999877  4566777777543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.82  E-value=1.9e-09  Score=89.66  Aligned_cols=90  Identities=18%  Similarity=0.206  Sum_probs=74.4

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC---------Cc----cccCCHHhhhcCCCEEEEecc-CCh
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV---------PY----AFYSNVCELAANSDALIICCA-LTD  223 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~---------~~----~~~~~l~ell~~aDiV~l~~P-~t~  223 (331)
                      .+.-.++.|||.|..|...++.++++|.+|.++|.+....         ..    .....+.+.+++||+|+.++- ...
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~  108 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  108 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence            3567899999999999999999999999999999876440         01    112357889999999999873 244


Q ss_pred             hhhhhccHHHHhcCCCCcEEEEcC
Q 020073          224 QTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       224 ~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      ....+|.++.++.||||+++||++
T Consensus       109 ~aP~lIt~~mv~~Mk~GSVIVDva  132 (168)
T d1pjca1         109 RAPILVPASLVEQMRTGSVIVDVA  132 (168)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             ccCeeecHHHHhhcCCCcEEEEee
Confidence            667899999999999999999998

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.82  E-value=9.3e-09  Score=85.78  Aligned_cols=103  Identities=19%  Similarity=0.228  Sum_probs=77.6

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--------------C-------CccccCCHHhhhcCCCEEEEec
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--------------V-------PYAFYSNVCELAANSDALIICC  219 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--------------~-------~~~~~~~l~ell~~aDiV~l~~  219 (331)
                      +||++|||.|.||..+|..|...|++|.+|+|++..              .       ......++.|.++++|+|++++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            479999999999999999999999999999997532              0       0112357899999999999999


Q ss_pred             cCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCc
Q 020073          220 ALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       220 P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i  266 (331)
                      |.. .++.++ ++.-..++++.+++- .-|.......+.+.+.....
T Consensus        81 ~~~-~~~~~~-~~i~~~l~~~~~iv~-~~g~~~~~~~~~~~~~~~~~  124 (184)
T d1bg6a2          81 PAI-HHASIA-ANIASYISEGQLIIL-NPGATGGALEFRKILRENGA  124 (184)
T ss_dssp             CGG-GHHHHH-HHHGGGCCTTCEEEE-SSCCSSHHHHHHHHHHHTTC
T ss_pred             chh-HHHHHH-HHhhhccCCCCEEEE-eCCCCccHHHHHHHHHHhcC
Confidence            844 455554 445667899998774 45555566667777776543

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.67  E-value=1.3e-08  Score=84.14  Aligned_cols=89  Identities=24%  Similarity=0.322  Sum_probs=67.8

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-------CC--ccccCCHHhhhcCCCEEEEeccCChhhhh
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-------VP--YAFYSNVCELAANSDALIICCALTDQTRR  227 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------~~--~~~~~~l~ell~~aDiV~l~~P~t~~t~~  227 (331)
                      ++.++++.|||+|.||+.+++.|...|. +|.+++|+..+       .+  ...+.++.+.+.++|+|+.|++   ....
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~ats---s~~~   97 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATA---APHP   97 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCS---SSSC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecC---CCCc
Confidence            4889999999999999999999999998 69999998654       12  2335678889999999999965   4456


Q ss_pred             hccHHHHhcC------CCCcEEEEcCCC
Q 020073          228 MINREVMLAL------GKEGIIVNVGRG  249 (331)
Q Consensus       228 li~~~~l~~m------k~ga~lIn~srg  249 (331)
                      +|+++.++..      ++..++||.|..
T Consensus        98 ii~~~~i~~~~~~r~~~~~~~iiDlavP  125 (159)
T d1gpja2          98 VIHVDDVREALRKRDRRSPILIIDIANP  125 (159)
T ss_dssp             CBCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred             cccHhhhHHHHHhcccCCCeEEEeecCC
Confidence            7888777532      233467776543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.63  E-value=8.3e-08  Score=80.61  Aligned_cols=88  Identities=18%  Similarity=0.258  Sum_probs=70.3

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccc-----------------------------cC
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAF-----------------------------YS  203 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~-----------------------------~~  203 (331)
                      +.-.+|.|||.|..|...++.++++|++|.++|.+...      ....+                             ..
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            45679999999999999999999999999999987654      11100                             01


Q ss_pred             CHHhhhcCCCEEEEec--cCChhhhhhccHHHHhcCCCCcEEEEcC
Q 020073          204 NVCELAANSDALIICC--ALTDQTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       204 ~l~ell~~aDiV~l~~--P~t~~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      .+.+.+++||+|+.++  |.. ....+|+++.++.||||+++||++
T Consensus       107 ~l~~~l~~aDlVI~talipG~-~aP~lit~~mv~~Mk~GSVIVDva  151 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDLA  151 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHHhhhhheeeeecCCc-ccceeehHHHHHhcCCCcEEEEEe
Confidence            2455688999999776  433 456689999999999999999997

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=98.58  E-value=5.6e-09  Score=85.23  Aligned_cols=83  Identities=13%  Similarity=-0.007  Sum_probs=57.0

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcC
Q 020073          164 VGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLAL  237 (331)
Q Consensus       164 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~m  237 (331)
                      |||||+|+||+.+++.|+.-+..+.+|+|++++      .......++.++++++|+|++|+|.. ...     +.++.+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~-~i~-----~v~~~l   75 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDR-YIK-----TVANHL   75 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTT-THH-----HHHTTT
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccch-hhh-----HHHhhh
Confidence            799999999999999998744334688988764      12233567889999999999999954 333     344555


Q ss_pred             -CCCcEEEEcCCCCcc
Q 020073          238 -GKEGIIVNVGRGAVI  252 (331)
Q Consensus       238 -k~ga~lIn~srg~~v  252 (331)
                       +++.++|+++-+.-.
T Consensus        76 ~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          76 NLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             CCSSCCEEECCSSSCG
T ss_pred             cccceeeeecccchhh
Confidence             478999999876543

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.45  E-value=1e-07  Score=79.03  Aligned_cols=90  Identities=24%  Similarity=0.290  Sum_probs=71.5

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhcc
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~  230 (331)
                      -|++|+|+|||||+-|++-|..|+..|++|++--|...+       .++ ...++.|+.++||+|.+.+|... -..+..
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf-~v~~~~eA~~~aDiim~L~PD~~-q~~vy~   90 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGL-KVADVKTAVAAADVVMILTPDEF-QGRLYK   90 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTC-EEECHHHHHHTCSEEEECSCHHH-HHHHHH
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhcc-ccccHHHHhhhcCeeeeecchHH-HHHHHH
Confidence            378999999999999999999999999999887665433       233 34689999999999999999443 344566


Q ss_pred             HHHHhcCCCCcEEEEcCCCC
Q 020073          231 REVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~srg~  250 (331)
                      ++....||+|+.+. .++|=
T Consensus        91 ~~I~p~lk~g~~L~-FaHGf  109 (182)
T d1np3a2          91 EEIEPNLKKGATLA-FAHGF  109 (182)
T ss_dssp             HHTGGGCCTTCEEE-ESCCH
T ss_pred             HhhhhhcCCCcEEE-Eeccc
Confidence            77888999999865 45554

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.39  E-value=1.5e-06  Score=74.25  Aligned_cols=102  Identities=20%  Similarity=0.268  Sum_probs=80.1

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccccCCHHhhhc-CCCEEEEeccCChhhhhhcc
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAFYSNVCELAA-NSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~~~~l~ell~-~aDiV~l~~P~t~~t~~li~  230 (331)
                      +|.|+||+|-|+|++|+.+|+.|..+|++|+++|.....      .+. ...+.++++. .||+++-|.     +.+.|+
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~-~~~~~~~~~~~~~DI~iPcA-----~~~~I~   97 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGH-TAVALEDVLSTPCDVFAPCA-----MGGVIT   97 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC-EECCGGGGGGCCCSEEEECS-----CSCCBC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcc-cccCccccccccceeeeccc-----cccccc
Confidence            599999999999999999999999999999999876543      122 2346677665 699988663     567899


Q ss_pred             HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          231 REVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      ++..++++- .+++..+-+.+.++++ -+.|.++.|.
T Consensus        98 ~~~a~~i~a-k~i~e~AN~p~~~~~~-~~~L~~rgI~  132 (201)
T d1c1da1          98 TEVARTLDC-SVVAGAANNVIADEAA-SDILHARGIL  132 (201)
T ss_dssp             HHHHHHCCC-SEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred             HHHHhhhhh-heeeccCCCCcchhhH-HHHhcccceE
Confidence            999999974 5778888888887753 5677777664

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.37  E-value=2.1e-07  Score=75.77  Aligned_cols=99  Identities=17%  Similarity=0.216  Sum_probs=67.6

Q ss_pred             ceEEEEecChHHHHHHHHHhhCC-CEEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFG-CNVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      .+|||||+|+||+++++.|...| .+|.+++|+++.       .+.....+.+ .+.++|+|+++++. ....     +.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~-~v~~~Div~lavkP-~~~~-----~v   73 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLP-ELHSDDVLILAVKP-QDME-----AA   73 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCC-CCCTTSEEEECSCH-HHHH-----HH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccccccc-cccccceEEEecCH-HHHH-----Hh
Confidence            47999999999999999886656 799999998754       2333344444 46789999999961 2222     23


Q ss_pred             HhcCC-CCcEEEEcCCCCccCHHHHHHHHHh-CCceEE
Q 020073          234 MLALG-KEGIIVNVGRGAVIDENEMVRCLVR-GEIAGA  269 (331)
Q Consensus       234 l~~mk-~ga~lIn~srg~~vd~~al~~aL~~-~~i~ga  269 (331)
                      ++.++ .+.++|++.-|-  ..+.+.+.|.. .++..+
T Consensus        74 ~~~l~~~~~~viS~~ag~--~~~~l~~~l~~~~~iir~  109 (152)
T d1yqga2          74 CKNIRTNGALVLSVAAGL--SVGTLSRYLGGTRRIVRV  109 (152)
T ss_dssp             HTTCCCTTCEEEECCTTC--CHHHHHHHTTSCCCEEEE
T ss_pred             HHHHhhcccEEeecccCC--CHHHHHHHhCcCcceEee
Confidence            34443 468999988776  45567777643 334433

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.36  E-value=1.1e-07  Score=73.63  Aligned_cols=89  Identities=21%  Similarity=0.171  Sum_probs=65.6

Q ss_pred             CCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------C-Ccccc--CCHHhhhcCCCEEEEeccCCh
Q 020073          154 PLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------V-PYAFY--SNVCELAANSDALIICCALTD  223 (331)
Q Consensus       154 ~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~-~~~~~--~~l~ell~~aDiV~l~~P~t~  223 (331)
                      |..-+++|++++|||.|.+|.+-|+.|..+|++|+++++...+       . .....  .--++.+..+++|+.+.. + 
T Consensus         5 Pi~l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~-d-   82 (113)
T d1pjqa1           5 PIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATD-D-   82 (113)
T ss_dssp             EEEECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCS-C-
T ss_pred             ceEEEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCC-C-
Confidence            4445799999999999999999999999999999999876654       1 11111  112346778998887743 2 


Q ss_pred             hhhhhccHHHHhcCCCCcEEEEcC
Q 020073          224 QTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       224 ~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                         .-+|++....+|+..++||++
T Consensus        83 ---~~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          83 ---DTVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             ---HHHHHHHHHHHHHTTCEEEET
T ss_pred             ---HHHHHHHHHHHHHcCCEEEeC
Confidence               235666667788888999975

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=6.1e-07  Score=73.12  Aligned_cols=86  Identities=20%  Similarity=0.213  Sum_probs=65.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--------CCc-----cccCCHHhhhcCCCEEEEeccCChhhhhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--------VPY-----AFYSNVCELAANSDALIICCALTDQTRRM  228 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--------~~~-----~~~~~l~ell~~aDiV~l~~P~t~~t~~l  228 (331)
                      ++|+|||.|.||+.+|..|...|.+|.+++|....        ...     ....+..+.+..+|+|+++++. ..+...
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka-~~~~~~   79 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA-WQVSDA   79 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG-GGHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecc-cchHHH
Confidence            47999999999999999999999999999998765        011     1123456778899999999984 455555


Q ss_pred             ccHHHHhcCCCCcEEEEcCCC
Q 020073          229 INREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       229 i~~~~l~~mk~ga~lIn~srg  249 (331)
                      + +.....+.+++.++.+.-|
T Consensus        80 ~-~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          80 V-KSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             H-HHHHTTSCTTSCEEEECSS
T ss_pred             H-HhhccccCcccEEeeccCc
Confidence            4 4444567788888887665

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.25  E-value=6.7e-07  Score=74.88  Aligned_cols=87  Identities=17%  Similarity=0.256  Sum_probs=63.9

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--------------CC-------ccccCCHHhhhcCCCEEEEecc
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--------------VP-------YAFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--------------~~-------~~~~~~l~ell~~aDiV~l~~P  220 (331)
                      ++|+|||.|.+|.++|..|...|.+|..|.|..++              ..       .....+++++++++|+|++++|
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            47999999999999999999999999999874221              00       1124678999999999999999


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCCc
Q 020073          221 LTDQTRRMINREVMLALGKEGIIVNVGRGAV  251 (331)
Q Consensus       221 ~t~~t~~li~~~~l~~mk~ga~lIn~srg~~  251 (331)
                       +...+..+ .+....+++. .+|.++.|..
T Consensus        81 -s~~~~~~~-~~l~~~l~~~-~ii~~tkg~~  108 (180)
T d1txga2          81 -TDGVLPVM-SRILPYLKDQ-YIVLISKGLI  108 (180)
T ss_dssp             -GGGHHHHH-HHHTTTCCSC-EEEECCCSEE
T ss_pred             -hhhhHHHH-Hhhccccccc-eecccccCcc
Confidence             44556555 3345556655 5566667754

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.23  E-value=2.1e-07  Score=78.85  Aligned_cols=90  Identities=17%  Similarity=0.186  Sum_probs=65.7

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------------C-------CccccCCHHhhhcCCCEEEEe
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------------V-------PYAFYSNVCELAANSDALIIC  218 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~-------~~~~~~~l~ell~~aDiV~l~  218 (331)
                      ++.++|+|||.|.+|.++|..|...|.+|..|.|.++.             .       ......+++++++++|+|+++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiia   84 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFV   84 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEEC
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEc
Confidence            55678999999999999999999999999999875421             0       112346899999999999999


Q ss_pred             ccCChhhhhhccHH---H-HhcCCCCcEEEEcCCC
Q 020073          219 CALTDQTRRMINRE---V-MLALGKEGIIVNVGRG  249 (331)
Q Consensus       219 ~P~t~~t~~li~~~---~-l~~mk~ga~lIn~srg  249 (331)
                      +| +...+.++.+-   . -...+++..+|+++-|
T Consensus        85 vP-s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          85 IP-TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             SC-HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             Cc-HHHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            99 44444444221   0 1123566778998877

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2.1e-06  Score=72.65  Aligned_cols=99  Identities=12%  Similarity=0.152  Sum_probs=75.2

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-----------------CC------------------ccccCCHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-----------------VP------------------YAFYSNVC  206 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------------~~------------------~~~~~~l~  206 (331)
                      ++|+|||.|.||+.+|..+...|++|+.+|++++.                 .+                  .....++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~   84 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   84 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence            68999999999999999999999999999988642                 00                  01235778


Q ss_pred             hhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 020073          207 ELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLV  262 (331)
Q Consensus       207 ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~  262 (331)
                      +++++||+|+=++|.+-+.+.-+-++.=+.++++++|...+.+-  .-..+.+.+.
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l--~i~~la~~~~  138 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANATT  138 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSS
T ss_pred             hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCccc--ccchhhhhcc
Confidence            89999999999999988877656565556678888877665543  3444555544

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=1.3e-06  Score=65.13  Aligned_cols=61  Identities=23%  Similarity=0.254  Sum_probs=45.7

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC-------Ccc-ccCC-HHhhhcCCCEEEEe
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV-------PYA-FYSN-VCELAANSDALIIC  218 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-------~~~-~~~~-l~ell~~aDiV~l~  218 (331)
                      +++||+|+|+|+|..|+++|+.|...|++|+++|....+.       ... .... -++.+.+.|+|++.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~S   71 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVAS   71 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEEC
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEEC
Confidence            5789999999999999999999999999999999865531       110 1111 13456778877775

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.12  E-value=3.7e-06  Score=71.86  Aligned_cols=89  Identities=18%  Similarity=0.278  Sum_probs=65.5

Q ss_pred             CCC-ceEEEEecChHHHHHHHHHhh------CCCEEEEECCCC-CC------CCcc----ccCCHHhhhcCCCEEEEecc
Q 020073          159 LGG-KRVGIVGLGNIGLQVAKRLQA------FGCNVLYNSRSK-KP------VPYA----FYSNVCELAANSDALIICCA  220 (331)
Q Consensus       159 l~g-~~vgIiG~G~IG~~~A~~l~~------~G~~V~~~~~~~-~~------~~~~----~~~~l~ell~~aDiV~l~~P  220 (331)
                      ++| |+|+|||||+-|++-|..|+.      .|.+|++--|.. ..      .+..    ...+..|+.++||+|.+.+|
T Consensus        41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlP  120 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS  120 (226)
T ss_dssp             TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSC
T ss_pred             hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecc
Confidence            678 899999999999999999997      557776543333 22      2322    13468899999999999999


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073          221 LTDQTRRMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       221 ~t~~t~~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                      ...+.. +. ++....||+|+.+.= |.|=
T Consensus       121 De~Q~~-vy-~~I~p~Lk~G~~L~F-aHGF  147 (226)
T d1qmga2         121 DSAQAD-NY-EKVFSHMKPNSILGL-SHGF  147 (226)
T ss_dssp             HHHHHH-HH-HHHHHHSCTTCEEEE-SSSH
T ss_pred             hHHHHH-HH-HHHHHhcCCCceeee-cchh
Confidence            654433 55 468899999998653 4553

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.10  E-value=3.9e-06  Score=69.62  Aligned_cols=90  Identities=17%  Similarity=0.154  Sum_probs=66.0

Q ss_pred             CCccCCCceEEEEecChH-HHHHHHHHhhCCCEEEEECCCCCC---------CCc--------cccCCHHhhhcCCCEEE
Q 020073          155 LGSKLGGKRVGIVGLGNI-GLQVAKRLQAFGCNVLYNSRSKKP---------VPY--------AFYSNVCELAANSDALI  216 (331)
Q Consensus       155 ~~~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~~~~~~~---------~~~--------~~~~~l~ell~~aDiV~  216 (331)
                      .|.+++||++.|||-+.+ |+.+|..|...|+.|..++.....         ...        ...+.+++...++|+|+
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvI  102 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI  102 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEE
Confidence            467899999999998765 999999999999999877643211         000        00123778888999999


Q ss_pred             EeccCChhhhhh-ccHHHHhcCCCCcEEEEcCCCCc
Q 020073          217 ICCALTDQTRRM-INREVMLALGKEGIIVNVGRGAV  251 (331)
Q Consensus       217 l~~P~t~~t~~l-i~~~~l~~mk~ga~lIn~srg~~  251 (331)
                      .++|..    ++ +..++   .|+|+++||++-...
T Consensus       103 savG~p----~~~i~~d~---ik~GavvIDvGi~~~  131 (171)
T d1edza1         103 TGVPSE----NYKFPTEY---IKEGAVCINFACTKN  131 (171)
T ss_dssp             ECCCCT----TCCBCTTT---SCTTEEEEECSSSCC
T ss_pred             EccCCC----ccccChhh---cccCceEeecccccc
Confidence            998743    22 44433   599999999996543

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.06  E-value=6.4e-06  Score=69.87  Aligned_cols=142  Identities=18%  Similarity=0.105  Sum_probs=88.5

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------------C-------------CccccCCHHhhhcCCCEE
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------------V-------------PYAFYSNVCELAANSDAL  215 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~-------------~~~~~~~l~ell~~aDiV  215 (331)
                      ++|+|||+|.+|..+|..+...|++|++||.+.+.             .             ......++.+++..||++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            47999999999999999999999999999975421             0             012245788999999999


Q ss_pred             EEeccCCh---------hhhhhcc--HHHHhcCCCCcEEEEcCCCCccCHHHHHHHH-Hh--CCceEEEee-cCCCCCCC
Q 020073          216 IICCALTD---------QTRRMIN--REVMLALGKEGIIVNVGRGAVIDENEMVRCL-VR--GEIAGAGLD-VFENEPYV  280 (331)
Q Consensus       216 ~l~~P~t~---------~t~~li~--~~~l~~mk~ga~lIn~srg~~vd~~al~~aL-~~--~~i~ga~lD-V~~~EP~~  280 (331)
                      ++|+|...         .....++  ...+...+++.++|--|....=-.+.++..+ ++  +...+--+. +|.+|=..
T Consensus        81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE~~~  160 (202)
T d1mv8a2          81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLR  160 (202)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCCC
T ss_pred             EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhhhhc
Confidence            99998521         1112221  2344556788899888876664454443332 22  222111112 24556543


Q ss_pred             CC----ccccCCceEEcCCCCCCcHHHHHHH
Q 020073          281 PK----ELLELDNVVLQPHRAVFTSECFVDL  307 (331)
Q Consensus       281 ~~----~L~~~~nvilTPH~a~~t~~~~~~~  307 (331)
                      +.    ++...|++++    |+.+.++.+.+
T Consensus       161 ~G~a~~d~~~~~~iVi----G~~~~~~~~~~  187 (202)
T d1mv8a2         161 ESTAIKDYDFPPMTVI----GELDKQTGDLL  187 (202)
T ss_dssp             TTSHHHHHHSCSCEEE----EESSHHHHHHH
T ss_pred             ccchhhhhcCCCeEEE----EeCCHHHHHHH
Confidence            32    4667777765    45555544443

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.04  E-value=1.4e-06  Score=73.36  Aligned_cols=99  Identities=14%  Similarity=0.142  Sum_probs=73.3

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----------------C-Cc------------cccCCHHhhhcCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----------------V-PY------------AFYSNVCELAANS  212 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----------------~-~~------------~~~~~l~ell~~a  212 (331)
                      ++|+|||.|.||+.+|..+...|++|+.||++++.                . +.            ....+..+.+.++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a   84 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNV   84 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccccccc
Confidence            57999999999999999999999999999987642                0 00            0011222457899


Q ss_pred             CEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHH
Q 020073          213 DALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLV  262 (331)
Q Consensus       213 DiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~  262 (331)
                      |+|+-++|.+-+.+.=+-++.-+.++++++|...+.+-.+  ..|.+.+.
T Consensus        85 dlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i--~~la~~~~  132 (186)
T d1wdka3          85 DLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISI--SLLAKALK  132 (186)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCH--HHHGGGCS
T ss_pred             ceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccH--HHHHHhcc
Confidence            9999999999887776667677778999988876665443  45555544

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=6.4e-06  Score=67.86  Aligned_cols=131  Identities=18%  Similarity=0.223  Sum_probs=94.0

Q ss_pred             CccCCCceEEEEecCh-HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.++.||++.|||-+. +|+.+|..|...|++|+.++..        ..++.+.+++||+|+.++..    .++|..+. 
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~--------t~~l~~~~~~ADivI~a~G~----p~~i~~~~-   98 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF--------TKNLRHHVENADLLIVAVGK----PGFIPGDW-   98 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS--------CSCHHHHHHHCSEEEECSCC----TTCBCTTT-
T ss_pred             CcccccceEEEEeccccccHHHHHHHHHhhccccccccc--------cchhHHHHhhhhHhhhhccC----cccccccc-
Confidence            4478999999999887 8999999999999999887653        24688999999999999863    36787654 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN  314 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n  314 (331)
                        +|+|+++||++--.+          ++|++   .-||-..+      . ...--.+||=-||.-.-+..-+.+.+++.
T Consensus        99 --vk~g~vvIDvGi~~~----------~~~~~---~Gdvd~~~------v-~~~a~~~TPvPGGVGP~Tva~L~~N~v~a  156 (166)
T d1b0aa1          99 --IKEGAIVIDVGINRL----------ENGKV---VGDVVFED------A-AKRASYITPVPGGVGPMTVATLIENTLQA  156 (166)
T ss_dssp             --SCTTCEEEECCCEEC----------TTSCE---ECSBCHHH------H-HHHCSEECCSSSSSHHHHHHHHHHHHHHH
T ss_pred             --cCCCcEEEecCceec----------CCCCE---EeccccHh------H-HhheeEeCCCCCcccHHHHHHHHHHHHHH
Confidence              699999999984432          23444   24442111      1 11123699998988666666666666666


Q ss_pred             HHHHHcC
Q 020073          315 LEALFSN  321 (331)
Q Consensus       315 l~~~~~g  321 (331)
                      .+++.+.
T Consensus       157 ~~~~~~~  163 (166)
T d1b0aa1         157 CVEYHDP  163 (166)
T ss_dssp             HHHTTSC
T ss_pred             HHHHhCc
Confidence            6666543

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=2.9e-05  Score=64.13  Aligned_cols=136  Identities=16%  Similarity=0.213  Sum_probs=91.4

Q ss_pred             CccCCCceEEEEecCh-HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          156 GSKLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      +.+++||++.|||-+. +|+.+|..|...|+.|..++...        .++.+.+++||+|+.+++.    .+++..+. 
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t--------~~l~~~~~~aDivi~a~G~----~~~i~~~~-  100 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT--------AHLDEEVNKGDILVVATGQ----PEMVKGEW-  100 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------SSHHHHHTTCSEEEECCCC----TTCBCGGG-
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEeccc--------ccHHHHHhhccchhhcccc----cccccccc-
Confidence            4579999999999866 89999999999999999887642        4678899999999999864    35676654 


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHH
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGN  314 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~n  314 (331)
                        .|+|+++||++--.+.|...    ...+++.   -||-..      .. ...--.+||=-||.-.-+..-+.+.+++-
T Consensus       101 --vk~g~iviDvgi~~~~~~~~----~~~~~~~---gdvd~~------~v-~~~a~~~TPvPGGVGp~Tva~L~~N~v~a  164 (170)
T d1a4ia1         101 --IKPGAIVIDCGINYVPDDKK----PNGRKVV---GDVAYD------EA-KERASFITPVPGGVGPMTVAMLMQSTVES  164 (170)
T ss_dssp             --SCTTCEEEECCCBC--------------CCB---CSBCHH------HH-TTTCSEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred             --ccCCCeEeccCccccccccc----CCCCEEe---cccchH------hh-hhhceEeCCCCCchhHHHHHHHHHHHHHH
Confidence              69999999998655444322    1223342   344211      11 11233599977776555556666666666


Q ss_pred             HHHHHc
Q 020073          315 LEALFS  320 (331)
Q Consensus       315 l~~~~~  320 (331)
                      .++|++
T Consensus       165 ~~r~l~  170 (170)
T d1a4ia1         165 AKRFLE  170 (170)
T ss_dssp             HHHHHC
T ss_pred             HHHhhC
Confidence            677663

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.94  E-value=7.2e-06  Score=64.53  Aligned_cols=67  Identities=21%  Similarity=0.315  Sum_probs=50.9

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCc-------cccCCHHhh-hcCCCEEEEeccCChhhhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPY-------AFYSNVCEL-AANSDALIICCALTDQTRR  227 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~-------~~~~~l~el-l~~aDiV~l~~P~t~~t~~  227 (331)
                      |++.|+|+|++|+.+|+.|...|.+|++++.+++.      .+.       .....|+++ +.++|.|++++|.+.++.-
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~   80 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAST   80 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhHH
Confidence            57899999999999999999999999999987543      111       112345555 7899999999987755443


Q ss_pred             h
Q 020073          228 M  228 (331)
Q Consensus       228 l  228 (331)
                      +
T Consensus        81 ~   81 (134)
T d2hmva1          81 L   81 (134)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=1.3e-05  Score=65.96  Aligned_cols=92  Identities=14%  Similarity=0.020  Sum_probs=62.0

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----------CCccccCCHHh-hhcCCCEEEEeccCChhh
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----------VPYAFYSNVCE-LAANSDALIICCALTDQT  225 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----------~~~~~~~~l~e-ll~~aDiV~l~~P~t~~t  225 (331)
                      .++.||+|.|+|.|..+++++..|...|.+|.+++|+.++          .......++++ ...++|+|+.|+|..-..
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~~   93 (170)
T d1nyta1          14 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISG   93 (170)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGT
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCccc
Confidence            3578999999999999999999999999999999998654          01111223333 346799999999876432


Q ss_pred             hhhccHHHHhcCCCCcEEEEcCCCC
Q 020073          226 RRMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       226 ~~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                      .  .....++.++++++++++--..
T Consensus        94 ~--~~~~~~~~~~~~~~v~D~vY~P  116 (170)
T d1nyta1          94 D--IPAIPSSLIHPGIYCYDMFYQK  116 (170)
T ss_dssp             C--CCCCCGGGCCTTCEEEESCCCS
T ss_pred             C--CCCCcHHHhccCcEEEEeecCC
Confidence            1  1111233455666655554433

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.80  E-value=2.2e-05  Score=68.11  Aligned_cols=103  Identities=18%  Similarity=0.232  Sum_probs=78.3

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccccCCHHhhh-cCCCEEEEeccCChhhhhh
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAFYSNVCELA-ANSDALIICCALTDQTRRM  228 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~~~~l~ell-~~aDiV~l~~P~t~~t~~l  228 (331)
                      .+|.|+||.|-|+|++|+.+|+.|...|++|++.+.+...       .+. ...+.++++ ..|||++-|.     ..+.
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~-~~~~~~~~~~~~cDIl~PcA-----~~~~  108 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGA-DAVAPNAIYGVTCDIFAPCA-----LGAV  108 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCC-EECCGGGTTTCCCSEEEECS-----CSCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCC-cccCCcccccccccEecccc-----cccc
Confidence            3599999999999999999999999999999999876533       111 223555654 5699999874     5678


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          229 INREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       229 i~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      |+.+...+++- .+++..+-..+.+.++- +.|.++.|.
T Consensus       109 I~~~~~~~l~a-k~Ive~ANn~~t~~ea~-~~L~~rGI~  145 (230)
T d1leha1         109 LNDFTIPQLKA-KVIAGSADNQLKDPRHG-KYLHELGIV  145 (230)
T ss_dssp             BSTTHHHHCCC-SEECCSCSCCBSSHHHH-HHHHHHTCE
T ss_pred             cChHHhhccCc-cEEEecccCCCCCchHH-HHHHhhCcE
Confidence            88888888874 47788888888887764 445555553

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=1.9e-05  Score=65.74  Aligned_cols=67  Identities=16%  Similarity=0.176  Sum_probs=52.2

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCCC--------------Cc----ccc---CCHHhhhcCCC
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKPV--------------PY----AFY---SNVCELAANSD  213 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~~--------------~~----~~~---~~l~ell~~aD  213 (331)
                      +.+++|+++.|+|.|..|++++..|...|. +|+.++|+.+..              ..    ...   .++.+.+.++|
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   92 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD   92 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence            346899999999999999999999999998 788999987640              00    001   23456678999


Q ss_pred             EEEEeccCC
Q 020073          214 ALIICCALT  222 (331)
Q Consensus       214 iV~l~~P~t  222 (331)
                      +|+.++|..
T Consensus        93 iiIN~Tp~G  101 (182)
T d1vi2a1          93 ILTNGTKVG  101 (182)
T ss_dssp             EEEECSSTT
T ss_pred             eeccccCCc
Confidence            999999865

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.74  E-value=0.00017  Score=60.12  Aligned_cols=149  Identities=12%  Similarity=0.066  Sum_probs=94.9

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--------C----------------CccccCCHHhhhcCCCEEEE
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--------V----------------PYAFYSNVCELAANSDALII  217 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--------~----------------~~~~~~~l~ell~~aDiV~l  217 (331)
                      ++|+|||+|.+|..+|..+. .|++|+++|.+.+.        .                ......+......++|++++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            47999999999999998775 69999999976532        0                00112345566789999999


Q ss_pred             eccCChhhh-hhcc-------HHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCC----ccc
Q 020073          218 CCALTDQTR-RMIN-------REVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPK----ELL  285 (331)
Q Consensus       218 ~~P~t~~t~-~li~-------~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~----~L~  285 (331)
                      ++|...... .+.+       .+.+...+++.++|.-|.-..=..+.+..-+.+.++.      |-+|-..+.    .+.
T Consensus        80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~------~~PE~i~~G~ai~d~~  153 (196)
T d1dlja2          80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRII------FSPEFLRESKALYDNL  153 (196)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEE------ECCCCCCTTSTTHHHH
T ss_pred             cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhc------cchhhcchhhhHhhcc
Confidence            999654322 1111       1122334677888888877776777787777666553      456665432    466


Q ss_pred             cCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 020073          286 ELDNVVLQPHRAVFTSECFVDLCELAVGNLEALF  319 (331)
Q Consensus       286 ~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~  319 (331)
                      ..|+|++--+-...  .......+.+++.+.+..
T Consensus       154 ~p~riv~G~~~~~~--~~~~~~~~~~~~l~~~~~  185 (196)
T d1dlja2         154 YPSRIIVSCEENDS--PKVKADAEKFALLLKSAA  185 (196)
T ss_dssp             SCSCEEEECCTTSC--HHHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCHhhH--HHHHHHHHHHHHHHHhhh
Confidence            77888765543322  223445556666665543

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.73  E-value=7.6e-05  Score=61.24  Aligned_cols=80  Identities=24%  Similarity=0.311  Sum_probs=55.8

Q ss_pred             CceEEEEecChHHHHHHHHHhhC-CCEEE-EECCCCCC---CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAF-GCNVL-YNSRSKKP---VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML  235 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~---~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~  235 (331)
                      ..++||||+|.||+..++.++.. +++++ +++++.+.   .......+.++++.+.|+|++|+|.......     ...
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~~-----a~~   77 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDIPE-----QAP   77 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECSCTTTHHHH-----HHH
T ss_pred             cceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccccccccchhhhhhccccceEEEeCCCcccHHH-----HHH
Confidence            35799999999999999999875 66765 56666544   2333456778888999999999987643221     122


Q ss_pred             cCCCCcEEEE
Q 020073          236 ALGKEGIIVN  245 (331)
Q Consensus       236 ~mk~ga~lIn  245 (331)
                      .++.|.-+|.
T Consensus        78 aL~aG~~vv~   87 (170)
T d1f06a1          78 KFAQFACTVD   87 (170)
T ss_dssp             HHTTTSEEEC
T ss_pred             HHHCCCcEEE
Confidence            3566655553

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.72  E-value=1e-05  Score=65.86  Aligned_cols=83  Identities=18%  Similarity=0.142  Sum_probs=58.5

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CC--------ccccCCHHhhhcCCCEEEEeccCChh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VP--------YAFYSNVCELAANSDALIICCALTDQ  224 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~--------~~~~~~l~ell~~aDiV~l~~P~t~~  224 (331)
                      ++|+|.|||+|.||+.+|+.|...|.+|+++||+...       .+        ......+++.+...|+++.++|....
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~   80 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH   80 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence            4789999999999999999999999999999998754       11        01112456678899999988875432


Q ss_pred             hhhhccHHHHhcCCCCcEEEEcC
Q 020073          225 TRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       225 t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      .  .+-.   ...+.+..+++++
T Consensus        81 ~--~~~~---~~~~~~~~~~~~~   98 (182)
T d1e5qa1          81 A--TVIK---SAIRQKKHVVTTS   98 (182)
T ss_dssp             H--HHHH---HHHHHTCEEECSS
T ss_pred             h--HHHH---HHHhhccceeecc
Confidence            1  1211   2234556677765

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.60  E-value=4.6e-05  Score=63.76  Aligned_cols=42  Identities=24%  Similarity=0.424  Sum_probs=37.7

Q ss_pred             CCccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          155 LGSKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       155 ~~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      .+.+|+||++.|.| .|.||+++|+.|...|++|+..+|+.++
T Consensus        17 ~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~   59 (191)
T d1luaa1          17 AGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDK   59 (191)
T ss_dssp             TTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             cCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHH
Confidence            35689999999999 7999999999999999999999998643

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.47  E-value=0.00058  Score=60.76  Aligned_cols=104  Identities=17%  Similarity=0.310  Sum_probs=74.3

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C----------------Cc-cccCCHHhhh-cC
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V----------------PY-AFYSNVCELA-AN  211 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~----------------~~-~~~~~l~ell-~~  211 (331)
                      ..+|.|+||.|=|+|++|+.+|+.|...|++|++++.+...      .                +. ....+.++++ ..
T Consensus        31 ~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (293)
T d1hwxa1          31 TPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVD  110 (293)
T ss_dssp             CSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCC
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCC
Confidence            34699999999999999999999999999999876532210      0                00 0011223444 37


Q ss_pred             CCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          212 SDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      |||++-|.     +.+.|+.+...+++- .+++-.+-|++-. +| .+.|.+..|.
T Consensus       111 ~DIliPaA-----~~~~I~~~~a~~l~a-k~I~EgAN~P~t~-eA-~~~L~~~gI~  158 (293)
T d1hwxa1         111 CDILIPAA-----SEKQLTKSNAPRVKA-KIIAEGANGPTTP-QA-DKIFLERNIM  158 (293)
T ss_dssp             CSEEEECS-----SSSCBCTTTGGGCCC-SEEECCSSSCBCH-HH-HHHHHHTTCE
T ss_pred             ccEEeecc-----ccccccHHHHHHHhh-CEEeccCCCCCCc-ch-HHHHHHCCCE
Confidence            99999773     667888888888865 4778999999654 44 4667777775

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.45  E-value=0.00057  Score=59.01  Aligned_cols=104  Identities=20%  Similarity=0.194  Sum_probs=75.8

Q ss_pred             CccCCCceEEEEecChHHHHHHHHHh-hCCCEEEEECCCCC------CC----------------C--ccccCCHHhhhc
Q 020073          156 GSKLGGKRVGIVGLGNIGLQVAKRLQ-AFGCNVLYNSRSKK------PV----------------P--YAFYSNVCELAA  210 (331)
Q Consensus       156 ~~~l~g~~vgIiG~G~IG~~~A~~l~-~~G~~V~~~~~~~~------~~----------------~--~~~~~~l~ell~  210 (331)
                      +.++.|+++.|=|+|++|+.+|+.|. ..|++|++++.+..      -.                .  .....+.++++.
T Consensus        26 ~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (234)
T d1b26a1          26 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE  105 (234)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHHT
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeeccccccc
Confidence            44689999999999999999999995 68999987653211      00                0  011234566665


Q ss_pred             -CCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          211 -NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       211 -~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                       .||+++-|.     ..+.|+.+...+++- .+++-.+-+.+.. ++ .+.|.++.|.
T Consensus       106 ~~~DI~~PcA-----~~~~I~~~~a~~l~~-~~I~e~AN~p~t~-~a-~~~L~~rgI~  155 (234)
T d1b26a1         106 LDVDILVPAA-----LEGAIHAGNAERIKA-KAVVEGANGPTTP-EA-DEILSRRGIL  155 (234)
T ss_dssp             SCCSEEEECS-----CTTCBCHHHHTTCCC-SEEECCSSSCBCH-HH-HHHHHHTTCE
T ss_pred             cccceeecch-----hcccccHHHHHHhhh-ceEeecCCCCCCH-HH-HHHHHHCCeE
Confidence             799998773     567899999999985 4778888888754 44 4778887775

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=0.00011  Score=56.22  Aligned_cols=38  Identities=29%  Similarity=0.428  Sum_probs=34.5

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      ..+.||||+|.|..|+.+|..++.+|++++++|+++..
T Consensus         9 ~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            45668999999999999999999999999999988765

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.44  E-value=0.00028  Score=54.31  Aligned_cols=99  Identities=18%  Similarity=0.276  Sum_probs=73.5

Q ss_pred             ceEEEEe----cChHHHHHHHHHhhCCCEEEEECCCCCC-CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhc
Q 020073          162 KRVGIVG----LGNIGLQVAKRLQAFGCNVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLA  236 (331)
Q Consensus       162 ~~vgIiG----~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~  236 (331)
                      |+|+|||    -|..|..+.+.|+..|++|+.+++..+. .+...+.+++++-..-|++++++|. +.+..++.+ .. .
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~lp~~~D~vvi~vp~-~~~~~~l~~-~~-~   78 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPP-KVGLQVAKE-AV-E   78 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSCH-HHHHHHHHH-HH-H
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCccccccchhccccceEEEEEeCH-HHHHHHHHH-HH-h
Confidence            6899999    4688999999999999999999887655 5666678999999999999999984 345555543 32 3


Q ss_pred             CCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          237 LGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       237 mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      +...++++..+   .. .+++.+.+++..+.
T Consensus        79 ~g~k~v~~~~g---~~-~~~~~~~a~~~gi~  105 (116)
T d1y81a1          79 AGFKKLWFQPG---AE-SEEIRRFLEKAGVE  105 (116)
T ss_dssp             TTCCEEEECTT---SC-CHHHHHHHHHHTCE
T ss_pred             cCCceEEeccc---hh-hHHHHHHHHHcCCE
Confidence            44556776543   33 44567777776665

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.42  E-value=0.00024  Score=61.81  Aligned_cols=102  Identities=21%  Similarity=0.283  Sum_probs=74.6

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------C------------------------CccccCCHHh
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------V------------------------PYAFYSNVCE  207 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~------------------------~~~~~~~l~e  207 (331)
                      +|.|+||.|=|+|++|+.+|+.|...|++|++++.....      .                        +.....+.++
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDA  107 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTG
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcch
Confidence            589999999999999999999999999999876543211      0                        0011123355


Q ss_pred             hh-cCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          208 LA-ANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       208 ll-~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      ++ ..|||++-|.     +.+.|+++...+++- .+++-.+-+.+ ..++ .+.|.++.|.
T Consensus       108 i~~~~~DIliPcA-----~~~~I~~~~a~~i~a-k~IvegAN~p~-t~~a-~~~L~~rgI~  160 (242)
T d1v9la1         108 IFKLDVDIFVPAA-----IENVIRGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGVV  160 (242)
T ss_dssp             GGGCCCSEEEECS-----CSSCBCTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred             hccccccEEeecc-----hhccccHHHHHhccc-CEEEecCCCCC-ChhH-HHHHHhCCeE
Confidence            54 4699999885     456788888888874 57788888887 5555 4778888775

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.00014  Score=59.06  Aligned_cols=101  Identities=19%  Similarity=0.281  Sum_probs=64.9

Q ss_pred             ceEEEEecChHHHH-HHHHHhhC-CCEEE-EECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccH
Q 020073          162 KRVGIVGLGNIGLQ-VAKRLQAF-GCNVL-YNSRSKKP-------VPYAFYSNVCELAANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       162 ~~vgIiG~G~IG~~-~A~~l~~~-G~~V~-~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      .++||||+|.+|+. .+..++.. +++++ ++|++.+.       .+...+.++++++++.|+|++++|...... ++ .
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~-~~-~   79 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFD-VV-S   79 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHH-HH-H
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhccc-cc-c
Confidence            37999999999986 56667654 67765 67887665       133456789999999999999998653322 22 2


Q ss_pred             HHHhcCCCC-cEEEEc-CCCCccCHHHHHHHHHhCCce
Q 020073          232 EVMLALGKE-GIIVNV-GRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       232 ~~l~~mk~g-a~lIn~-srg~~vd~~al~~aL~~~~i~  267 (331)
                      ..+   +.| .+++.- ---.+-+.+.|.++.++..+.
T Consensus        80 ~al---~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~  114 (164)
T d1tlta1          80 TLL---NAGVHVCVDKPLAENLRDAERLVELAARKKLT  114 (164)
T ss_dssp             HHH---HTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             ccc---cccceeeccccccCCHHHHHHHHHHHHHcCCc
Confidence            233   333 455542 112234555677776666543

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.41  E-value=7.5e-05  Score=68.29  Aligned_cols=84  Identities=15%  Similarity=0.183  Sum_probs=65.0

Q ss_pred             CceEEEEecChHHHHHHHHHh-hCCC-EEEEECCCCCC-----------CC--ccccCCHHhhhcCCCEEEEeccCChhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQ-AFGC-NVLYNSRSKKP-----------VP--YAFYSNVCELAANSDALIICCALTDQT  225 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~-~~G~-~V~~~~~~~~~-----------~~--~~~~~~l~ell~~aDiV~l~~P~t~~t  225 (331)
                      -++++|||.|..++.-++.+. -++. +|.+|+|++..           .+  .....+++++++.||+|+.|++ ++.+
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Ta-s~s~  206 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTA-DKAY  206 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCC-CSSE
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccc-cCCC
Confidence            368999999999998888764 5666 79999998643           11  2335789999999999999886 3455


Q ss_pred             hhhccHHHHhcCCCCcEEEEcCC
Q 020073          226 RRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       226 ~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      ..+++.+.   +|||+.+..+|.
T Consensus       207 ~Pv~~~~~---l~pG~hI~aiGs  226 (340)
T d1x7da_         207 ATIITPDM---LEPGMHLNAVGG  226 (340)
T ss_dssp             EEEECGGG---CCTTCEEEECSC
T ss_pred             Ccccchhh---cCCCCEEeeccc
Confidence            67887654   799999888864

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.39  E-value=0.0001  Score=57.67  Aligned_cols=81  Identities=16%  Similarity=0.258  Sum_probs=55.5

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC-------CCccc-------cCCHHhh-hcCCCEEEEeccCChhhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP-------VPYAF-------YSNVCEL-AANSDALIICCALTDQTR  226 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~-------~~~l~el-l~~aDiV~l~~P~t~~t~  226 (331)
                      ++|.|+|+|.+|+.+|+.|...|.+|++.+.+++.       .+...       ...|+++ +.++|.++.+++..+.  
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~--   78 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEV--   78 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHH--
Confidence            47999999999999999999999999999887643       11111       1234444 6889988888765432  


Q ss_pred             hhccHHHHhcCCCCcEEE
Q 020073          227 RMINREVMLALGKEGIIV  244 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lI  244 (331)
                      +++-......+.+..++.
T Consensus        79 N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          79 NLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             HHHHHHHHHHTTCCCEEE
T ss_pred             HHHHHHHHHHcCCceEEE
Confidence            334344455566665554

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.36  E-value=4e-05  Score=63.24  Aligned_cols=66  Identities=17%  Similarity=0.007  Sum_probs=48.4

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--------C---CccccCCHHhhhcCCCEEEEeccCC
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--------V---PYAFYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--------~---~~~~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      .++.|+++.|+|.|..|++++..|...+.+|++++|+.++        .   ........+..+.++|+|+.|+|..
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g   90 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG   90 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc
Confidence            3578999999999999999999998877899999998754        0   0111111122467889999998865

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.35  E-value=0.00019  Score=57.64  Aligned_cols=87  Identities=23%  Similarity=0.386  Sum_probs=56.7

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC-----------CCc-----cccCCHHhhhcCCCEEEEeccCCh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP-----------VPY-----AFYSNVCELAANSDALIICCALTD  223 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~-----------~~~-----~~~~~l~ell~~aDiV~l~~P~t~  223 (331)
                      |+|+|||.|.+|..+|-.+...|.  +++.+|.....           ...     ....+-.+.+++||+|+++.....
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~~   81 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIK   81 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCGG
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccccc
Confidence            789999999999999998876665  89999986543           000     111122467899999999865321


Q ss_pred             -------hh--------hhhcc--HHHHhcCCCCcEEEEcCC
Q 020073          224 -------QT--------RRMIN--REVMLALGKEGIIVNVGR  248 (331)
Q Consensus       224 -------~t--------~~li~--~~~l~~mk~ga~lIn~sr  248 (331)
                             .+        ..++.  ...+....|.+++|+++-
T Consensus        82 ~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  123 (146)
T d1hyha1          82 LQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISN  123 (146)
T ss_dssp             GTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             cccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecC
Confidence                   11        11221  123344578899999863

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=0.00011  Score=60.04  Aligned_cols=85  Identities=26%  Similarity=0.327  Sum_probs=56.0

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc----c--cCC-HHhhhcCCCEEEEeccCChhhh
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA----F--YSN-VCELAANSDALIICCALTDQTR  226 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~----~--~~~-l~ell~~aDiV~l~~P~t~~t~  226 (331)
                      .|.+|.|+|.|.+|...++.++.+|++|+++++++.+      .+..    +  ..+ .++.....|+++.++...... 
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~~-  105 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI-  105 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTC-
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCccc-
Confidence            4789999999999999999999999999999988765      1110    0  111 223445567777765432210 


Q ss_pred             hhccHHHHhcCCCCcEEEEcC
Q 020073          227 RMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~s  247 (331)
                       .+ ...++.++++..++.++
T Consensus       106 -~~-~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2         106 -DF-NIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             -CT-TTGGGGEEEEEEEEECC
T ss_pred             -hH-HHHHHHhhccceEEEec
Confidence             01 23455677777777765

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.34  E-value=0.00026  Score=56.33  Aligned_cols=87  Identities=25%  Similarity=0.289  Sum_probs=58.2

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC---------C-------Cc-cccCCHHhhhcCCCEEEEec--c
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP---------V-------PY-AFYSNVCELAANSDALIICC--A  220 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~---------~-------~~-~~~~~l~ell~~aDiV~l~~--P  220 (331)
                      .+|+|||.|.+|..+|..+...|.  ++..+|.....         .       .. ....+..+.+++||+|+++.  |
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~   80 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence            379999999999999999987774  89999987654         0       00 11134467899999999996  3


Q ss_pred             CChh-hhh-hc--cH-------HHHhcCCCCcEEEEcCC
Q 020073          221 LTDQ-TRR-MI--NR-------EVMLALGKEGIIVNVGR  248 (331)
Q Consensus       221 ~t~~-t~~-li--~~-------~~l~~mk~ga~lIn~sr  248 (331)
                      ..+. ++. ++  |.       +.+....|.+++++++-
T Consensus        81 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1guza1          81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN  119 (142)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence            3331 111 01  11       23333458899999864

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.28  E-value=5e-05  Score=62.77  Aligned_cols=65  Identities=18%  Similarity=0.199  Sum_probs=52.0

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCC------------C----ccccCCHHhhhcCCCEEEEecc
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPV------------P----YAFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~------------~----~~~~~~l~ell~~aDiV~l~~P  220 (331)
                      .+++||++.|+|.|..+++++..|...| +|++++|+.++.            .    .....+++..+..+|+++.+.|
T Consensus        14 ~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp   92 (177)
T d1nvta1          14 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP   92 (177)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCc
Confidence            3589999999999999999999998877 899999986540            0    0123456677889999999998


Q ss_pred             CC
Q 020073          221 LT  222 (331)
Q Consensus       221 ~t  222 (331)
                      ..
T Consensus        93 ~g   94 (177)
T d1nvta1          93 IG   94 (177)
T ss_dssp             TT
T ss_pred             cc
Confidence            65

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00017  Score=60.41  Aligned_cols=62  Identities=24%  Similarity=0.291  Sum_probs=49.4

Q ss_pred             CCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC------CC-------ccccCCHHhhhcCCCEEEEeccC
Q 020073          160 GGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP------VP-------YAFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~-------~~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      ..|+|.|+| .|.||+.+++.|...|++|.++.|++.+      ..       .....++.++++.+|+|+.++..
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~   77 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence            468999999 7999999999999999999999887643      11       11124577889999999998854

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.25  E-value=0.00028  Score=56.58  Aligned_cols=89  Identities=15%  Similarity=0.228  Sum_probs=56.9

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCC--CEEEEECCCCCC--------------CC-c-cccCCHHhhhcCCCEEEEecc
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFG--CNVLYNSRSKKP--------------VP-Y-AFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~~--------------~~-~-~~~~~l~ell~~aDiV~l~~P  220 (331)
                      ...++|+|||.|.+|..+|..|...|  -+|+.+|+..+.              .. . ....+. +.+++||+|+++..
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~-~~~~~adivvitag   81 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY-SDCKDADLVVITAG   81 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG-GGGTTCSEEEECCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH-HHhccccEEEEecc
Confidence            35679999999999999999998766  489999987532              00 0 111233 45789999999863


Q ss_pred             CC--h-hh--------hhhcc--HHHHhcCCCCcEEEEcCC
Q 020073          221 LT--D-QT--------RRMIN--REVMLALGKEGIIVNVGR  248 (331)
Q Consensus       221 ~t--~-~t--------~~li~--~~~l~~mk~ga~lIn~sr  248 (331)
                      ..  + .+        ..++.  .+.+..-.|.+++|+++-
T Consensus        82 ~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN  122 (146)
T d1ez4a1          82 APQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (146)
T ss_dssp             C----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence            21  1 11        11110  123444567889998873

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.23  E-value=0.00017  Score=65.33  Aligned_cols=82  Identities=17%  Similarity=0.204  Sum_probs=63.4

Q ss_pred             CceEEEEecChHHHHHHHHHhh-CCC-EEEEECCCCCC----------CCccccCCHHhhhcCCCEEEEeccCChhhhhh
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQA-FGC-NVLYNSRSKKP----------VPYAFYSNVCELAANSDALIICCALTDQTRRM  228 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~-~G~-~V~~~~~~~~~----------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~l  228 (331)
                      -++++|||.|..++..++.+.. +.. +|.+|+|+.+.          .+.....+..+.+..||+|+.++|   .+..+
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~---s~~P~  201 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTP---SRKPV  201 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCC---CSSCC
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEecc---Ccccc
Confidence            3689999999999999998864 555 79999998654          122233467788999999999865   45667


Q ss_pred             ccHHHHhcCCCCcEEEEcCC
Q 020073          229 INREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       229 i~~~~l~~mk~ga~lIn~sr  248 (331)
                      +..+   .+|+|+.++.++.
T Consensus       202 ~~~~---~l~~G~hv~~iGs  218 (320)
T d1omoa_         202 VKAE---WVEEGTHINAIGA  218 (320)
T ss_dssp             BCGG---GCCTTCEEEECSC
T ss_pred             cchh---hcCCCCeEeecCC
Confidence            8665   4799999999875

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.18  E-value=0.00032  Score=56.63  Aligned_cols=89  Identities=19%  Similarity=0.195  Sum_probs=59.7

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------CCc----cccCCHHhhhcCCCEEEEecc
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------VPY----AFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~~~----~~~~~l~ell~~aDiV~l~~P  220 (331)
                      +.++|+|||.|.+|+.+|..+...+. +++.+|.....              ...    ....+.++.++.||+|+++..
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag   85 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   85 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence            45799999999999999988876665 89999977643              010    112356788999999999884


Q ss_pred             CC--hh------hhh-hc--cH-------HHHhcCCCCcEEEEcCC
Q 020073          221 LT--DQ------TRR-MI--NR-------EVMLALGKEGIIVNVGR  248 (331)
Q Consensus       221 ~t--~~------t~~-li--~~-------~~l~~mk~ga~lIn~sr  248 (331)
                      ..  +.      ++- ++  |.       +.+....|.+++++++-
T Consensus        86 ~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsN  131 (154)
T d1pzga1          86 LTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN  131 (154)
T ss_dssp             CSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             cccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            21  11      221 11  11       12334468899999874

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.15  E-value=0.00074  Score=53.67  Aligned_cols=87  Identities=17%  Similarity=0.293  Sum_probs=53.8

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC--------CC-c------cccCCHHhhhcCCCEEEEeccC--C
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP--------VP-Y------AFYSNVCELAANSDALIICCAL--T  222 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~--------~~-~------~~~~~l~ell~~aDiV~l~~P~--t  222 (331)
                      ++|+|||.|.+|..+|-.+...|.  ++..+|.....        .. .      .....-.+.+++||+|+++.-.  .
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   81 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK   81 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence            479999999999999998876665  89999977653        00 0      1112235678999999998532  2


Q ss_pred             h-hhh-hhc--cH-------HHHhcCCCCcEEEEcCC
Q 020073          223 D-QTR-RMI--NR-------EVMLALGKEGIIVNVGR  248 (331)
Q Consensus       223 ~-~t~-~li--~~-------~~l~~mk~ga~lIn~sr  248 (331)
                      + +++ .++  |.       +.+....|.+++|+++-
T Consensus        82 ~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN  118 (142)
T d1y6ja1          82 PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN  118 (142)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred             cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecC
Confidence            1 111 111  11       12333468899999865

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.08  E-value=0.00027  Score=56.75  Aligned_cols=89  Identities=22%  Similarity=0.429  Sum_probs=58.1

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC-----------C-----CccccCCHHhhhcCCCEEEEecc
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP-----------V-----PYAFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~-----------~-----~~~~~~~l~ell~~aDiV~l~~P  220 (331)
                      -.+++|+|||.|.+|..+|..+...|.  ++..+|..+..           .     .......-.+.+++||+|+++.-
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag   83 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG   83 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence            357899999999999999999886665  79999986532           0     11112233578999999999764


Q ss_pred             CCh---hhh-hhc--cH-------HHHhcCCCCcEEEEcC
Q 020073          221 LTD---QTR-RMI--NR-------EVMLALGKEGIIVNVG  247 (331)
Q Consensus       221 ~t~---~t~-~li--~~-------~~l~~mk~ga~lIn~s  247 (331)
                      ...   +++ .++  |.       +.+.+..|.+++|+++
T Consensus        84 ~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt  123 (148)
T d1ldna1          84 ANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT  123 (148)
T ss_dssp             CCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred             cccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence            321   111 111  11       2333446788999985

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=97.07  E-value=0.00074  Score=54.63  Aligned_cols=84  Identities=17%  Similarity=0.202  Sum_probs=55.4

Q ss_pred             ceEEEEecChHHHH-HHHHHhhCC-CEEE-EECCCCCC--------CCcc-ccCCHHhhh-----cCCCEEEEeccCChh
Q 020073          162 KRVGIVGLGNIGLQ-VAKRLQAFG-CNVL-YNSRSKKP--------VPYA-FYSNVCELA-----ANSDALIICCALTDQ  224 (331)
Q Consensus       162 ~~vgIiG~G~IG~~-~A~~l~~~G-~~V~-~~~~~~~~--------~~~~-~~~~l~ell-----~~aDiV~l~~P~t~~  224 (331)
                      -++||||.|.||+. +.+.++.+. .++. +.+++...        .+.. ...++++++     .+.|+|+.++|....
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h   84 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence            47999999999986 567887654 3665 45766543        1222 223355443     467999999885544


Q ss_pred             hhhhccHHHHhcCCCCcEEEEcCC
Q 020073          225 TRRMINREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       225 t~~li~~~~l~~mk~ga~lIn~sr  248 (331)
                      ..+   +..+...+.|.++|+-+.
T Consensus        85 ~~~---~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          85 VQN---EALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             HHH---HHHHHHHCTTCEEEECST
T ss_pred             HHh---HHHHHHHHcCCEEEEccc
Confidence            443   334555799999999875

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.06  E-value=0.0042  Score=53.50  Aligned_cols=102  Identities=27%  Similarity=0.329  Sum_probs=73.1

Q ss_pred             cCCCceEEEEecChHHHHHHHHHh-hCCCEEEEECCCCCC----------------------CCc--cccCCHHhhh-cC
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQ-AFGCNVLYNSRSKKP----------------------VPY--AFYSNVCELA-AN  211 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~-~~G~~V~~~~~~~~~----------------------~~~--~~~~~l~ell-~~  211 (331)
                      .|.|+||.|-|+|++|+.+|+.|. .+|++|+..+.+...                      ..+  ....+.++++ ..
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~  108 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELE  108 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEECHHHHHHSC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeeeccccccccc
Confidence            489999999999999999999885 689998876433211                      000  1122455654 56


Q ss_pred             CCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          212 SDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      |||++-|.     +.+.|+.+..++++- .+++-.+-+.+.. ++ .+.|.++.|-
T Consensus       109 ~DIl~PcA-----~~~~I~~~~a~~i~a-k~I~e~AN~p~t~-ea-~~~L~~rgI~  156 (239)
T d1gtma1         109 VDVLAPAA-----IEEVITKKNADNIKA-KIVAEVANGPVTP-EA-DEILFEKGIL  156 (239)
T ss_dssp             CSEEEECS-----CSCCBCTTGGGGCCC-SEEECCSSSCBCH-HH-HHHHHHTTCE
T ss_pred             ccEEeecc-----ccccccHHHHHhccc-cEEEecCCCCCCH-HH-HHHHHHCCCE
Confidence            99999875     456888888888865 5778888898754 44 4778877775

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=97.06  E-value=0.0012  Score=52.02  Aligned_cols=98  Identities=14%  Similarity=0.105  Sum_probs=72.0

Q ss_pred             CceEEEEec----ChHHHHHHHHHhhCCCEEEEECCCCCC---CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHH
Q 020073          161 GKRVGIVGL----GNIGLQVAKRLQAFGCNVLYNSRSKKP---VPYAFYSNVCELAANSDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       161 g~~vgIiG~----G~IG~~~A~~l~~~G~~V~~~~~~~~~---~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      -|+|+|||.    ++.|..+++.|+..|+++..++.++..   .+...+.++.++-..-|++++++| .+.+..++.+. 
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~i~g~~~~~~l~~i~~~iD~v~v~~p-~~~v~~~v~~~-   90 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRP-PSALMDHLPEV-   90 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSC-HHHHTTTHHHH-
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccceeeceecccchhhccCCCceEEEecc-HHHHHHHHHHH-
Confidence            468999996    789999999999999999988876543   455567889999889999999998 44556666432 


Q ss_pred             HhcCCCCcEEEEcCCCCccCHHHHHHHHHhC
Q 020073          234 MLALGKEGIIVNVGRGAVIDENEMVRCLVRG  264 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~~vd~~al~~aL~~~  264 (331)
                      . .+...++++..+   ..++++...|.++|
T Consensus        91 ~-~~g~k~i~~q~G---~~~~e~~~~a~~~G  117 (136)
T d1iuka_          91 L-ALRPGLVWLQSG---IRHPEFEKALKEAG  117 (136)
T ss_dssp             H-HHCCSCEEECTT---CCCHHHHHHHHHTT
T ss_pred             H-hhCCCeEEEecC---ccCHHHHHHHHHcC
Confidence            2 345667877654   45665555555544

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.03  E-value=0.00043  Score=54.97  Aligned_cols=87  Identities=25%  Similarity=0.424  Sum_probs=56.4

Q ss_pred             ceEEEEecChHHHHHHHHHhhCC--CEEEEECCCCCC-----------CCc----cccCCHHhhhcCCCEEEEecc--CC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFG--CNVLYNSRSKKP-----------VPY----AFYSNVCELAANSDALIICCA--LT  222 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~~~-----------~~~----~~~~~l~ell~~aDiV~l~~P--~t  222 (331)
                      .+|+|||.|.+|..+|-.+...+  -++..+|...+.           ...    ....+..+.+++||+|+++.-  ..
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   80 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQK   80 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccC
Confidence            37999999999999999876544  489999987543           001    112234567999999999963  22


Q ss_pred             h-hhh-hhc--cH-------HHHhcCCCCcEEEEcCC
Q 020073          223 D-QTR-RMI--NR-------EVMLALGKEGIIVNVGR  248 (331)
Q Consensus       223 ~-~t~-~li--~~-------~~l~~mk~ga~lIn~sr  248 (331)
                      + .++ .++  |.       +.+....|.+++++++-
T Consensus        81 ~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtN  117 (140)
T d1a5za1          81 PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN  117 (140)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCC
Confidence            2 111 111  11       23444578899999873

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.03  E-value=0.00029  Score=58.06  Aligned_cols=101  Identities=17%  Similarity=0.184  Sum_probs=65.2

Q ss_pred             ceEEEEecChHHHHHHHHHhhC-CCEEE-EECCCCCC-------C----CccccCCHHhhhc--CCCEEEEeccCChhhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF-GCNVL-YNSRSKKP-------V----PYAFYSNVCELAA--NSDALIICCALTDQTR  226 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~~~~~~~-------~----~~~~~~~l~ell~--~aDiV~l~~P~t~~t~  226 (331)
                      .++||||+|.+|+..++.++.. +++|+ +++++.+.       .    ....+.+++++++  +.|+|++++|......
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~   81 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   81 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc
Confidence            3799999999999999999875 67876 46776432       1    1234678999874  5799999988654433


Q ss_pred             hhccHHHHhcCCCCc-EEEEcCC-CCccCHHHHHHHHHhCCce
Q 020073          227 RMINREVMLALGKEG-IIVNVGR-GAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       227 ~li~~~~l~~mk~ga-~lIn~sr-g~~vd~~al~~aL~~~~i~  267 (331)
                      ..     ...++.|. +++.--= -.+-+.+.|.+..++..+.
T Consensus        82 ~~-----~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~  119 (184)
T d1ydwa1          82 WA-----IKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  119 (184)
T ss_dssp             HH-----HHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             hh-----hhhhhccceeecccccccCHHHHHHHHHHHHhhCCE
Confidence            32     22244453 4443211 1223445678888777665

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.01  E-value=0.00065  Score=54.93  Aligned_cols=37  Identities=32%  Similarity=0.488  Sum_probs=33.2

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      .|.+|.|+|.|.||...++.++.+|++|+++++++.+
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r   62 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRR   62 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHHH
Confidence            4678999999999999999999999999999987543

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.98  E-value=0.00023  Score=58.19  Aligned_cols=61  Identities=18%  Similarity=0.295  Sum_probs=46.0

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC-------CCccccCCHHhhhcCCCEEEEeccCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP-------VPYAFYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------~~~~~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      ++++|.|+|.|..|++++..|+..|+ +|.+++|+.++       .+.....++  -..++|+|+.|+|..
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~--~~~~~DliINaTpiG   84 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSL--ENQQADILVNVTSIG   84 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCC--TTCCCSEEEECSSTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhcc--cccchhhheeccccC
Confidence            57899999999999999999999998 79999998754       111111111  235789999988853

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.95  E-value=0.0014  Score=51.11  Aligned_cols=107  Identities=18%  Similarity=0.236  Sum_probs=73.7

Q ss_pred             CCCceEEEEec----ChHHHHHHHHHhhCC-CEEEEECCCCCC-CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHH
Q 020073          159 LGGKRVGIVGL----GNIGLQVAKRLQAFG-CNVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINRE  232 (331)
Q Consensus       159 l~g~~vgIiG~----G~IG~~~A~~l~~~G-~~V~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~  232 (331)
                      ++-++|+|||.    |..|..+.+.|+..| .+|+.+++..+. .+...+.+++++-..-|++++++| .+.+..++ ++
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~G~~~y~sl~dlp~~vDlvvi~vp-~~~~~~~~-~~   83 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVVP-KRFVKDTL-IQ   83 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECSC-HHHHHHHH-HH
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccCCeEeecchhhcCCCCceEEEecC-hHHhHHHH-HH
Confidence            45589999996    899999999998765 589999987765 566778899999999999999998 44556666 33


Q ss_pred             HHhcCCCCcEEEEcCCCCc-----cCHHHHHHHHHhCCce
Q 020073          233 VMLALGKEGIIVNVGRGAV-----IDENEMVRCLVRGEIA  267 (331)
Q Consensus       233 ~l~~mk~ga~lIn~srg~~-----vd~~al~~aL~~~~i~  267 (331)
                      ..+.=-++++++..+-++.     -.++.|.+..++..++
T Consensus        84 ~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gir  123 (129)
T d2csua1          84 CGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMR  123 (129)
T ss_dssp             HHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCE
Confidence            3332233344444333332     2334566666665553

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00076  Score=54.73  Aligned_cols=83  Identities=24%  Similarity=0.324  Sum_probs=55.0

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC------CCcc-----ccCCHHhhh--------cCCCEEEEec
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP------VPYA-----FYSNVCELA--------ANSDALIICC  219 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~------~~~~-----~~~~l~ell--------~~aDiV~l~~  219 (331)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.++++++      .+..     ...+..+..        ...|+|+-++
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~  105 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  105 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence            36789999999999999999999999 79999887654      1111     012232221        2478887776


Q ss_pred             cCChhhhhhccHHHHhcCCCCcEEEEcC
Q 020073          220 ALTDQTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       220 P~t~~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      +.. .+   + ...++.+++|..++.++
T Consensus       106 G~~-~~---~-~~a~~~~~~gG~iv~~G  128 (171)
T d1pl8a2         106 GAE-AS---I-QAGIYATRSGGTLVLVG  128 (171)
T ss_dssp             CCH-HH---H-HHHHHHSCTTCEEEECS
T ss_pred             CCc-hh---H-HHHHHHhcCCCEEEEEe
Confidence            532 22   1 33456677777776665

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00043  Score=49.39  Aligned_cols=35  Identities=23%  Similarity=0.377  Sum_probs=32.4

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      |||||+|.|..|+.++...+.+|.+++++++....
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            79999999999999999999999999999987653

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.91  E-value=0.00049  Score=54.90  Aligned_cols=41  Identities=29%  Similarity=0.505  Sum_probs=36.3

Q ss_pred             CCCCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCC
Q 020073          153 YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRS  193 (331)
Q Consensus       153 ~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~  193 (331)
                      +++..+|.||++.|||.|.+|..-|+.|...|++|+++++.
T Consensus         5 lpl~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           5 LQLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             EEEEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             chhheeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            34566799999999999999999999999999999988653

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=96.91  E-value=0.00072  Score=58.62  Aligned_cols=70  Identities=14%  Similarity=0.146  Sum_probs=60.6

Q ss_pred             CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          197 VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       197 ~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      .+.....+..|++++||+|++|+|..+.+..++ ++..+.+++|++++|+|..+......+.+.+....+.
T Consensus       127 ~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~  196 (242)
T d2b0ja2         127 VGLKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN  196 (242)
T ss_dssp             GTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSE
T ss_pred             CCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCE
Confidence            445556899999999999999999877788887 6788999999999999999988888898888887765

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00032  Score=56.95  Aligned_cols=37  Identities=35%  Similarity=0.569  Sum_probs=32.8

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      .|.+|.|+|.|.+|...++.++.+|+++++.+++.++
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~   66 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAK   66 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhH
Confidence            4789999999999999999999999998888876543

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.87  E-value=0.00049  Score=55.76  Aligned_cols=102  Identities=13%  Similarity=0.138  Sum_probs=63.6

Q ss_pred             ceEEEEecChHHHH-HHHHHhhC-CCEEEEECCCCCC-------CCc-cccCCHHhhhc-CCCEEEEeccCChhhhhhcc
Q 020073          162 KRVGIVGLGNIGLQ-VAKRLQAF-GCNVLYNSRSKKP-------VPY-AFYSNVCELAA-NSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       162 ~~vgIiG~G~IG~~-~A~~l~~~-G~~V~~~~~~~~~-------~~~-~~~~~l~ell~-~aDiV~l~~P~t~~t~~li~  230 (331)
                      .++||||+|.+|+. ....++.. +.++.++++++..       .+. ..+.+.++++. +.|+|++++|........  
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~~~--   79 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLA--   79 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHH--
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccccccccc--
Confidence            47999999999976 56777665 5588888876543       122 23567778775 579999999866443322  


Q ss_pred             HHHHhcCCCCcEEEEcCC-CCccCHHHHHHHHHhCCce
Q 020073          231 REVMLALGKEGIIVNVGR-GAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       231 ~~~l~~mk~ga~lIn~sr-g~~vd~~al~~aL~~~~i~  267 (331)
                      ...++.=|  .+++.-== -.+-+.+.|.++.++..+.
T Consensus        80 ~~al~~gk--~V~~EKP~~~~~~e~~~l~~~a~~~~~~  115 (167)
T d1xeaa1          80 AFFLHLGI--PTFVDKPLAASAQECENLYELAEKHHQP  115 (167)
T ss_dssp             HHHHHTTC--CEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             cccccccc--ccccCCCCcCCHHHHHHHHHHHHHcCCE
Confidence            33333222  36664322 2224456677777766653

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.87  E-value=0.0034  Score=49.56  Aligned_cols=101  Identities=12%  Similarity=0.141  Sum_probs=72.5

Q ss_pred             CCceEEEEec----ChHHHHHHHHHhhCCCEEEEECCCCCC-CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHH
Q 020073          160 GGKRVGIVGL----GNIGLQVAKRLQAFGCNVLYNSRSKKP-VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVM  234 (331)
Q Consensus       160 ~g~~vgIiG~----G~IG~~~A~~l~~~G~~V~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  234 (331)
                      .-++|+|||.    |+.|..+++.|+.+|++|+.+++.... .+...+.++.++-..-|++++++|.. .+..++.+ ..
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~i~vp~~-~~~~~~~e-~~   95 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKPK-LTMEYVEQ-AI   95 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCHH-HHHHHHHH-HH
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccCccceEEEEEeCHH-HHHHHHHH-HH
Confidence            3578999995    579999999999999999999987655 56666889999999999999999833 44555533 22


Q ss_pred             hcCCCCcEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          235 LALGKEGIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       235 ~~mk~ga~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                       .+....+++..+   ..+++. .+.+++..+.
T Consensus        96 -~~g~k~v~~~~G---~~~ee~-~~~a~~~gi~  123 (139)
T d2d59a1          96 -KKGAKVVWFQYN---TYNREA-SKKADEAGLI  123 (139)
T ss_dssp             -HHTCSEEEECTT---CCCHHH-HHHHHHTTCE
T ss_pred             -HhCCCEEEEecc---ccCHHH-HHHHHHCCCE
Confidence             235556777554   345554 4444444453

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.86  E-value=0.0043  Score=50.05  Aligned_cols=90  Identities=10%  Similarity=0.156  Sum_probs=65.9

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC-----------------CccccCCHHhhhcCCCEEEEec
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV-----------------PYAFYSNVCELAANSDALIICC  219 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~-----------------~~~~~~~l~ell~~aDiV~l~~  219 (331)
                      .|.|++|++|| ..++.++++..+..||+++.++.+..-..                 ......+++++++.+|+|..-.
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~   80 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV   80 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence            37899999999 55688999999999999999887643210                 1123568999999999988643


Q ss_pred             cCC------hh------hhhhccHHHHhcCCCCcEEEEcC
Q 020073          220 ALT------DQ------TRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       220 P~t------~~------t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      =..      .+      ....++.+.++++|++++|.-..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl  120 (163)
T d1pvva2          81 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  120 (163)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             eeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence            111      01      12356899999999999988764

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.86  E-value=0.00066  Score=55.16  Aligned_cols=91  Identities=14%  Similarity=0.293  Sum_probs=60.0

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC---------C-----C--ccccCCHHhhhcCCCEEEEec
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP---------V-----P--YAFYSNVCELAANSDALIICC  219 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~---------~-----~--~~~~~~l~ell~~aDiV~l~~  219 (331)
                      .+..++|+|||.|.+|..+|-.+...|.  ++..+|...+.         .     .  ......-.+.+++||+|+++.
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA   96 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA   96 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence            3667899999999999999999988777  89999986532         0     0  001122346789999999987


Q ss_pred             cC--Ch-hhhh-hc--cHH-------HHhcCCCCcEEEEcCC
Q 020073          220 AL--TD-QTRR-MI--NRE-------VMLALGKEGIIVNVGR  248 (331)
Q Consensus       220 P~--t~-~t~~-li--~~~-------~l~~mk~ga~lIn~sr  248 (331)
                      -.  .+ +++- ++  |.+       .+....+.+++|+++.
T Consensus        97 g~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN  138 (160)
T d1i0za1          97 GVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN  138 (160)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            32  22 2221 11  111       2333467889998874

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.74  E-value=0.00056  Score=55.26  Aligned_cols=35  Identities=34%  Similarity=0.628  Sum_probs=31.7

Q ss_pred             ceEEEE-ecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          162 KRVGIV-GLGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       162 ~~vgIi-G~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      +||+|| |.|.||+++|++|...|++|.+++|++++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~   36 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEK   36 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            479999 79999999999999999999999998653

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.69  E-value=0.00047  Score=56.61  Aligned_cols=36  Identities=33%  Similarity=0.431  Sum_probs=32.5

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~  195 (331)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.++++.
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccc
Confidence            58899999999999999999999998 7999987654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.69  E-value=0.00054  Score=55.29  Aligned_cols=36  Identities=25%  Similarity=0.377  Sum_probs=32.8

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .|.+|.|+|.|.+|...++.++.+|.+|++.++++.
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~   62 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDA   62 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhh
Confidence            378999999999999999999999999999988754

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.67  E-value=0.0013  Score=51.57  Aligned_cols=85  Identities=20%  Similarity=0.239  Sum_probs=63.8

Q ss_pred             cCCCceEEEEec----------ChHHHHHHHHHhhCCCEEEEECCCCCC-----------------CCccccCCHHhhhc
Q 020073          158 KLGGKRVGIVGL----------GNIGLQVAKRLQAFGCNVLYNSRSKKP-----------------VPYAFYSNVCELAA  210 (331)
Q Consensus       158 ~l~g~~vgIiG~----------G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------------~~~~~~~~l~ell~  210 (331)
                      .+.+++|+|+|+          ++-...+++.|...|++|.+||+....                 .......++.+++.
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~   89 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA   89 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh
Confidence            366889999997          477889999999999999999974211                 01123568999999


Q ss_pred             CCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 020073          211 NSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       211 ~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg  249 (331)
                      .||+|+++++.. +.     .+....++++.+++++ ||
T Consensus        90 ~~D~ivi~t~h~-~f-----~~l~~~~~~~~~I~D~-~~  121 (136)
T d1mv8a3          90 SSDVLVLGNGDE-LF-----VDLVNKTPSGKKLVDL-VG  121 (136)
T ss_dssp             HCSEEEECSCCG-GG-----HHHHHSCCTTCEEEES-SS
T ss_pred             hceEEEEEeCCH-HH-----HHHHHHhcCCCEEEEC-CC
Confidence            999999998754 22     2344567778899997 44

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=96.67  E-value=0.00097  Score=58.24  Aligned_cols=105  Identities=18%  Similarity=0.283  Sum_probs=69.2

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC----C--CCcc--------------------------ccCC
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK----P--VPYA--------------------------FYSN  204 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~----~--~~~~--------------------------~~~~  204 (331)
                      .+|.|+|+.|=|+|++|+.+|+.|...|++|+.++.+..    +  ....                          ...+
T Consensus        32 ~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (255)
T d1bgva1          32 DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFP  111 (255)
T ss_dssp             CCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceeec
Confidence            468999999999999999999999999999986542210    0  0000                          0001


Q ss_pred             HHhh-hcCCCEEEEeccCChhhhhhccHHHHhcCCC-C-cEEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          205 VCEL-AANSDALIICCALTDQTRRMINREVMLALGK-E-GIIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       205 l~el-l~~aDiV~l~~P~t~~t~~li~~~~l~~mk~-g-a~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      .+++ -..||+++-|     ++.+.|+.+..++++. + .+++-.+-+.+.++. .-..|+++.|.
T Consensus       112 ~~~~~~~~~DiliPc-----A~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~ea-~~~ll~~~gI~  171 (255)
T d1bgva1         112 GEKPWGQKVDIIMPC-----ATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEA-LRFLMQQPNMV  171 (255)
T ss_dssp             TCCGGGSCCSEEECC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHH-HHHHHHCTTCE
T ss_pred             hhhcccccccEEeec-----cccccccHHHHHhhhhcCceEEecCCCCCcchHH-HHHHHHhcCCE
Confidence            2222 3468988755     3667888887777764 2 477888888876654 33346665664

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.63  E-value=0.0017  Score=51.98  Aligned_cols=89  Identities=20%  Similarity=0.216  Sum_probs=57.9

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC---------C-----Cc---cccCCHHhhhcCCCEEEEeccCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP---------V-----PY---AFYSNVCELAANSDALIICCALT  222 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~---------~-----~~---~~~~~l~ell~~aDiV~l~~P~t  222 (331)
                      ..+|+|||.|.+|+.+|..+...+. ++..+|...+.         .     ..   ....+..+.+++||+|+++.-..
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~   82 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT   82 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence            3589999999999999988876555 88999987643         0     00   01123457889999999997532


Q ss_pred             hh---h-----h-hhc--cHHH-------HhcCCCCcEEEEcCCC
Q 020073          223 DQ---T-----R-RMI--NREV-------MLALGKEGIIVNVGRG  249 (331)
Q Consensus       223 ~~---t-----~-~li--~~~~-------l~~mk~ga~lIn~srg  249 (331)
                      ..   +     + .++  |...       +....|.+++++++-.
T Consensus        83 ~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNP  127 (150)
T d1t2da1          83 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP  127 (150)
T ss_dssp             SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             cCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            11   1     1 111  2222       3334588999998753

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.59  E-value=0.002  Score=51.09  Aligned_cols=87  Identities=14%  Similarity=0.125  Sum_probs=56.6

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC--------------CCc---cccCCHHhhhcCCCEEEEecc--
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP--------------VPY---AFYSNVCELAANSDALIICCA--  220 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~--------------~~~---~~~~~l~ell~~aDiV~l~~P--  220 (331)
                      .+|+|||.|.+|..+|-.+...|.  ++..+|...+.              .+.   ....+-.+.+++||+|+++..  
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvitag~~   80 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEecccc
Confidence            479999999999999998886665  79999976533              011   011122478999999999874  


Q ss_pred             CChh---------hhhhc--cHHHHhcCCCCcEEEEcCC
Q 020073          221 LTDQ---------TRRMI--NREVMLALGKEGIIVNVGR  248 (331)
Q Consensus       221 ~t~~---------t~~li--~~~~l~~mk~ga~lIn~sr  248 (331)
                      .++.         +..++  -.+.+....|.+++++++-
T Consensus        81 ~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1ojua1          81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (142)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             CCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence            2221         11111  0123444567899999875

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.59  E-value=0.0054  Score=48.91  Aligned_cols=89  Identities=15%  Similarity=0.193  Sum_probs=61.8

Q ss_pred             CCCceEEEEec---ChHHHHHHHHHhhCCCEEEEECCCC-CC----------CCccccCCHHhhhcCCCEEEEeccCCh-
Q 020073          159 LGGKRVGIVGL---GNIGLQVAKRLQAFGCNVLYNSRSK-KP----------VPYAFYSNVCELAANSDALIICCALTD-  223 (331)
Q Consensus       159 l~g~~vgIiG~---G~IG~~~A~~l~~~G~~V~~~~~~~-~~----------~~~~~~~~l~ell~~aDiV~l~~P~t~-  223 (331)
                      |.|++|++||=   |++.++++..+..||+++.++.+.. .+          .......+++++++++|+|...--... 
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~   80 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER   80 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence            57999999994   5699999999999999876543321 11          123345689999999998875421110 


Q ss_pred             ----------hhhhhccHHHHhcCCCCcEEEEcC
Q 020073          224 ----------QTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       224 ----------~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                                .....++.+.++.++++++|.-+.
T Consensus        81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~L  114 (153)
T d1pg5a2          81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  114 (153)
T ss_dssp             SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             ccchhHHHHHHHhhhhhHHHHhccCCCeEEecCC
Confidence                      012235788888888888887663

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.53  E-value=0.0017  Score=51.45  Aligned_cols=87  Identities=22%  Similarity=0.303  Sum_probs=53.7

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC---------C-----Cc---cccCCHHhhhcCCCEEEEeccC--
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP---------V-----PY---AFYSNVCELAANSDALIICCAL--  221 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~---------~-----~~---~~~~~l~ell~~aDiV~l~~P~--  221 (331)
                      ++|+|||.|.+|..+|-.+...+. +++.+|.....         .     ..   ....+-.+.+++||+|+++...  
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvitag~~~   81 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGAPR   81 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEEeeeccC
Confidence            589999999999999998876565 89999986653         0     00   0111223467899999999842  


Q ss_pred             Ch-hhh-hhc--cH----H---HHhcCCCCcEEEEcCC
Q 020073          222 TD-QTR-RMI--NR----E---VMLALGKEGIIVNVGR  248 (331)
Q Consensus       222 t~-~t~-~li--~~----~---~l~~mk~ga~lIn~sr  248 (331)
                      .+ .++ .++  |.    +   .+.+-.|.++++.++-
T Consensus        82 ~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtN  119 (142)
T d1uxja1          82 KPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN  119 (142)
T ss_dssp             --------CHHHHHHHHHHHHHHHGGGCTTCEEEECSS
T ss_pred             CcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCC
Confidence            22 121 111  11    1   2233457888888763

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.52  E-value=0.0025  Score=52.47  Aligned_cols=60  Identities=20%  Similarity=0.189  Sum_probs=41.1

Q ss_pred             eEEEEecChHHHHHHHHHhhC-CCEEEEEC-CCCCC-------CC-----------------ccccCCHHhhhcCCCEEE
Q 020073          163 RVGIVGLGNIGLQVAKRLQAF-GCNVLYNS-RSKKP-------VP-----------------YAFYSNVCELAANSDALI  216 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~-G~~V~~~~-~~~~~-------~~-----------------~~~~~~l~ell~~aDiV~  216 (331)
                      +|||.|+|+||+.++|.+... +++|++.+ +.+..       ..                 .....++.+++.++|+|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            799999999999999999854 56877654 33321       00                 001125667777888888


Q ss_pred             EeccCC
Q 020073          217 ICCALT  222 (331)
Q Consensus       217 l~~P~t  222 (331)
                      -|.|.-
T Consensus        83 ecTG~f   88 (178)
T d1b7go1          83 DTTPNG   88 (178)
T ss_dssp             ECCSTT
T ss_pred             ECCCCc
Confidence            887753

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.51  E-value=0.0015  Score=53.60  Aligned_cols=101  Identities=20%  Similarity=0.182  Sum_probs=62.7

Q ss_pred             ceEEEEecChHHHH-HHHHHhhCC--CEEE-EECCCCCC-------CC-ccccCCHHhhhc--CCCEEEEeccCChhhhh
Q 020073          162 KRVGIVGLGNIGLQ-VAKRLQAFG--CNVL-YNSRSKKP-------VP-YAFYSNVCELAA--NSDALIICCALTDQTRR  227 (331)
Q Consensus       162 ~~vgIiG~G~IG~~-~A~~l~~~G--~~V~-~~~~~~~~-------~~-~~~~~~l~ell~--~aDiV~l~~P~t~~t~~  227 (331)
                      -++||||+|.+|+. .+..++.++  ++|. ++|++...       .+ ...+.+++++++  +.|+|++++|.......
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~~~   83 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLPF   83 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccccccccccc
Confidence            47999999999987 577787654  4766 56776543       12 234678999986  47999999886533322


Q ss_pred             hccHHHHhcCCCC-cEEEEcCC-CCccCHHHHHHHHHhCCce
Q 020073          228 MINREVMLALGKE-GIIVNVGR-GAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       228 li~~~~l~~mk~g-a~lIn~sr-g~~vd~~al~~aL~~~~i~  267 (331)
                        -...++   .| .+++.-== -.+-+...|.+..++....
T Consensus        84 --~~~al~---~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~  120 (181)
T d1zh8a1          84 --IEKALR---KGVHVICEKPISTDVETGKKVVELSEKSEKT  120 (181)
T ss_dssp             --HHHHHH---TTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred             --cccccc---cchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence              233333   33 45554321 2233445677777765543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.47  E-value=0.00082  Score=54.00  Aligned_cols=37  Identities=27%  Similarity=0.427  Sum_probs=33.0

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      .|.+|.|+|.|.||...++.++..|.+|++.++++.+
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r   63 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEK   63 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHH
Confidence            4789999999999999999999999999999876543

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.44  E-value=0.0013  Score=53.33  Aligned_cols=91  Identities=22%  Similarity=0.366  Sum_probs=58.2

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC--------------CCc--cccCCHHhhhcCCCEEEEec
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP--------------VPY--AFYSNVCELAANSDALIICC  219 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~--------------~~~--~~~~~l~ell~~aDiV~l~~  219 (331)
                      .+...+|+|||.|.+|..+|-.+...|.  ++..+|.....              ...  ....+-.+.+++||+|+++.
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvita   95 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITA   95 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEec
Confidence            3556789999999999999999987766  89999976432              010  01112245669999999987


Q ss_pred             cC--Ch-hhh-hhc--cHHHH-------hcCCCCcEEEEcCC
Q 020073          220 AL--TD-QTR-RMI--NREVM-------LALGKEGIIVNVGR  248 (331)
Q Consensus       220 P~--t~-~t~-~li--~~~~l-------~~mk~ga~lIn~sr  248 (331)
                      -.  .+ +++ .++  |.+.+       ....+.+++++++-
T Consensus        96 g~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          96 GARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             SCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence            32  22 222 112  22222       22367889999875

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.43  E-value=0.0015  Score=51.94  Aligned_cols=86  Identities=16%  Similarity=0.299  Sum_probs=55.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCC--EEEEECCCCCC---------C-----Cc--cccCCHHhhhcCCCEEEEecc--C
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGC--NVLYNSRSKKP---------V-----PY--AFYSNVCELAANSDALIICCA--L  221 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~~~~~~~---------~-----~~--~~~~~l~ell~~aDiV~l~~P--~  221 (331)
                      .+|+|||.|.+|..+|-.+...|.  ++..+|..+..         .     ..  ....+-.+.+++||+|+++.-  .
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~~~   81 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPRQ   81 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEeccccc
Confidence            479999999999999998876665  89999987542         0     00  011222456899999999873  2


Q ss_pred             Ch-hhh-hhc--cH-------HHHhcCCCCcEEEEcC
Q 020073          222 TD-QTR-RMI--NR-------EVMLALGKEGIIVNVG  247 (331)
Q Consensus       222 t~-~t~-~li--~~-------~~l~~mk~ga~lIn~s  247 (331)
                      .+ +++ .++  |.       ..+....|.+++|.++
T Consensus        82 ~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt  118 (143)
T d1llda1          82 KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT  118 (143)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             CCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            22 111 111  11       2233446788988887

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.42  E-value=0.0013  Score=52.42  Aligned_cols=87  Identities=15%  Similarity=0.190  Sum_probs=56.7

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhCCC--EEEEECCCCCC-------C--Cc------cccCCHHhhhcCCCEEEEecc--C
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAFGC--NVLYNSRSKKP-------V--PY------AFYSNVCELAANSDALIICCA--L  221 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~~~-------~--~~------~~~~~l~ell~~aDiV~l~~P--~  221 (331)
                      .+|+|||. |.+|+.+|-.+...|.  ++..+|.....       .  ..      ....+..+.++.||+|+++.-  .
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~   80 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence            47999995 9999999999987776  68888875432       0  00      112456788999999999864  2


Q ss_pred             Ch-hhhh-hc--cHH-------HHhcCCCCcEEEEcCC
Q 020073          222 TD-QTRR-MI--NRE-------VMLALGKEGIIVNVGR  248 (331)
Q Consensus       222 t~-~t~~-li--~~~-------~l~~mk~ga~lIn~sr  248 (331)
                      .+ +++- ++  |.+       .+....|.++++.++.
T Consensus        81 ~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN  118 (144)
T d1mlda1          81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN  118 (144)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            22 1111 11  111       2233367889998864

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.25  E-value=0.0013  Score=53.80  Aligned_cols=37  Identities=19%  Similarity=0.266  Sum_probs=32.7

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP  196 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~  196 (331)
                      .|.+|.|+|.|.||...++.++.+|. +|++.++++++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r   64 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPIC   64 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhh
Confidence            47899999999999999999999998 79999887643

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.19  E-value=0.0034  Score=51.32  Aligned_cols=30  Identities=33%  Similarity=0.432  Sum_probs=24.4

Q ss_pred             ceEEEEecChHHHHHHHHHhhCC-CEEEEEC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFG-CNVLYNS  191 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~~  191 (331)
                      ++|||-|||+||+.++|.+...+ ++|+..+
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaIn   32 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVS   32 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEe
Confidence            68999999999999999886554 6776544

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.015  Score=46.01  Aligned_cols=101  Identities=15%  Similarity=0.256  Sum_probs=59.5

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhC----CCEEEEECCCCCC---CCc-----cccCCH-HhhhcCCCEEEEeccCChhhhh
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAF----GCNVLYNSRSKKP---VPY-----AFYSNV-CELAANSDALIICCALTDQTRR  227 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~----G~~V~~~~~~~~~---~~~-----~~~~~l-~ell~~aDiV~l~~P~t~~t~~  227 (331)
                      |+|||||. |.+|+.+.++|..-    -.+++++..+...   ...     ...... .+.+.++|++++|+|.... ..
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s-~~   80 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYT-NE   80 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHH-HH
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHH-HH
Confidence            68999995 99999999876431    2356655443322   111     111112 2367899999999985532 22


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCCc-----------cCHHHHHHHHHhCC
Q 020073          228 MINREVMLALGKEGIIVNVGRGAV-----------IDENEMVRCLVRGE  265 (331)
Q Consensus       228 li~~~~l~~mk~ga~lIn~srg~~-----------vd~~al~~aL~~~~  265 (331)
                      +  ...+..-+.+.++|+.|.--=           |+.+.|..++++|.
T Consensus        81 ~--~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g~  127 (146)
T d1t4ba1          81 I--YPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGI  127 (146)
T ss_dssp             H--HHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             h--hHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcCC
Confidence            2  222222344467888876443           35557778887654

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=96.11  E-value=0.014  Score=46.38  Aligned_cols=101  Identities=19%  Similarity=0.272  Sum_probs=58.1

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhC----CCEEEEECCCCCC---CCc-----cccCC-HHhhhcCCCEEEEeccCChhhhh
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAF----GCNVLYNSRSKKP---VPY-----AFYSN-VCELAANSDALIICCALTDQTRR  227 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~----G~~V~~~~~~~~~---~~~-----~~~~~-l~ell~~aDiV~l~~P~t~~t~~  227 (331)
                      ++||||| .|-.|+++.++|...    ..++..+..+...   ...     ..... -.+.++++|+|++|+|.. .+..
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~-~s~~   79 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGS-YTEK   79 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHH-HHHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCch-HHHH
Confidence            4799999 799999999987532    2466544332211   111     01111 224578999999999954 3333


Q ss_pred             hccHHHHhcCCCCcEEEEcCCCCc-----------cCHHHHHHHHHhCC
Q 020073          228 MINREVMLALGKEGIIVNVGRGAV-----------IDENEMVRCLVRGE  265 (331)
Q Consensus       228 li~~~~l~~mk~ga~lIn~srg~~-----------vd~~al~~aL~~~~  265 (331)
                      +. .... .-..++++|+.|.--=           ++.+.+.+++++|.
T Consensus        80 ~~-~~l~-~~g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~~~~~  126 (147)
T d1mb4a1          80 VY-PALR-QAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGT  126 (147)
T ss_dssp             HH-HHHH-HTTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             Hh-HHHH-HcCCceEEEeCCccccccCCceEEeCCcCHHHHHHHHHcCC
Confidence            33 2222 2233467888775432           45555666666554

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.013  Score=47.16  Aligned_cols=89  Identities=13%  Similarity=0.102  Sum_probs=63.6

Q ss_pred             CCCceEEEEecC-hHHHHHHHHHhhCCCEEEEECCCCCCC-----------------CccccCCHHhhhcCCCEEEEecc
Q 020073          159 LGGKRVGIVGLG-NIGLQVAKRLQAFGCNVLYNSRSKKPV-----------------PYAFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       159 l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~-----------------~~~~~~~l~ell~~aDiV~l~~P  220 (331)
                      |.|++|++||=| ++-++++..+..||+++.+..+..-..                 ......++++.+..+|+|.....
T Consensus         2 l~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~~   81 (170)
T d1otha2           2 LKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTW   81 (170)
T ss_dssp             CTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCS
T ss_pred             CCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeece
Confidence            789999999954 466777777788999998887643220                 12235789999999999998764


Q ss_pred             CChh------------hhhhccHHHHhcCCCCcEEEEcC
Q 020073          221 LTDQ------------TRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       221 ~t~~------------t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      ....            ....++.+.++.+++.++|.-..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl  120 (170)
T d1otha2          82 ISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  120 (170)
T ss_dssp             SCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             ecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence            3211            12346778888888888888764

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.04  E-value=0.0035  Score=51.09  Aligned_cols=60  Identities=17%  Similarity=0.282  Sum_probs=42.5

Q ss_pred             CceEEEEecChHHHHHHH---HHh--hC-CCEEEEECCCCCC--------------C----CccccCCHHhhhcCCCEEE
Q 020073          161 GKRVGIVGLGNIGLQVAK---RLQ--AF-GCNVLYNSRSKKP--------------V----PYAFYSNVCELAANSDALI  216 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~---~l~--~~-G~~V~~~~~~~~~--------------~----~~~~~~~l~ell~~aDiV~  216 (331)
                      +.+|+|||.|++|...+-   .++  .+ +-+|..+|..++.              .    ......+.+++++.||+|+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            358999999999976432   332  33 3589999987643              0    1122468999999999999


Q ss_pred             Eecc
Q 020073          217 ICCA  220 (331)
Q Consensus       217 l~~P  220 (331)
                      ++.-
T Consensus        82 ~~~~   85 (171)
T d1obba1          82 NTAM   85 (171)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            8853

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.00  E-value=0.0032  Score=50.97  Aligned_cols=101  Identities=16%  Similarity=0.118  Sum_probs=58.4

Q ss_pred             ceEEEEecChHHHHHHHHHhhCC----CEEEEE-CCCCCC-CCccccCCHHhhhc--CCCEEEEeccCChhhhhhccHHH
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFG----CNVLYN-SRSKKP-VPYAFYSNVCELAA--NSDALIICCALTDQTRRMINREV  233 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G----~~V~~~-~~~~~~-~~~~~~~~l~ell~--~aDiV~l~~P~t~~t~~li~~~~  233 (331)
                      .+|||||+|.+|+..++.++...    ..+... ++.... .......++++++.  +.|+|++++|......  +-...
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~~H~~--~~~~a   85 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQEIDVAYICSESSSHED--YIRQF   85 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETTEEBCCHHHHHHCSSEEEEEECSCGGGHHH--HHHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHHHHHhhccCcCCHHHHHhCCCcchhhhccccccccc--ccccc
Confidence            47999999999999988887532    233332 222211 22223458999886  4688999988653322  22334


Q ss_pred             HhcCCCCcEEEEcC-CCCccCHHHHHHHHHhCCc
Q 020073          234 MLALGKEGIIVNVG-RGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       234 l~~mk~ga~lIn~s-rg~~vd~~al~~aL~~~~i  266 (331)
                      ++.=|  .+++.-= --.+-+.+.|.++.++...
T Consensus        86 l~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~~  117 (172)
T d1lc0a1          86 LQAGK--HVLVEYPMTLSFAAAQELWELAAQKGR  117 (172)
T ss_dssp             HHTTC--EEEEESCSCSCHHHHHHHHHHHHHTTC
T ss_pred             cccch--hhhcCCCccccHHHHHHHHHHHHHcCC
Confidence            43322  3665531 1234556667776555554

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=95.98  E-value=0.002  Score=54.68  Aligned_cols=64  Identities=22%  Similarity=0.180  Sum_probs=45.2

Q ss_pred             CCceEEEEecChHHHH-HHHHHhhC-CCEEE-EECCCCCC-------CC-----ccccCCHHhhhc--CCCEEEEeccCC
Q 020073          160 GGKRVGIVGLGNIGLQ-VAKRLQAF-GCNVL-YNSRSKKP-------VP-----YAFYSNVCELAA--NSDALIICCALT  222 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~-~A~~l~~~-G~~V~-~~~~~~~~-------~~-----~~~~~~l~ell~--~aDiV~l~~P~t  222 (331)
                      +--+|||||+|.+|+. ++..++.. +++|+ ++|++++.       .+     ...+.++++++.  +.|+|++++|..
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~  111 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNS  111 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGG
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchh
Confidence            3458999999999974 66666654 67876 67876543       11     123578999886  478999998865


Q ss_pred             h
Q 020073          223 D  223 (331)
Q Consensus       223 ~  223 (331)
                      .
T Consensus       112 ~  112 (221)
T d1h6da1         112 L  112 (221)
T ss_dssp             G
T ss_pred             h
Confidence            3

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.86  E-value=0.02  Score=46.35  Aligned_cols=37  Identities=19%  Similarity=0.342  Sum_probs=32.7

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP  196 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~  196 (331)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.++++.+
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r   65 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEK   65 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHH
Confidence            57899999999999999999999999 67788887654

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.86  E-value=0.003  Score=51.02  Aligned_cols=59  Identities=10%  Similarity=0.106  Sum_probs=41.3

Q ss_pred             ceEEEEecChHHHHHHHH--Hhh---C-CCEEEEECCCCCC---------------CCccccCCHHhhhcCCCEEEEecc
Q 020073          162 KRVGIVGLGNIGLQVAKR--LQA---F-GCNVLYNSRSKKP---------------VPYAFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~--l~~---~-G~~V~~~~~~~~~---------------~~~~~~~~l~ell~~aDiV~l~~P  220 (331)
                      .+|+|||.|++|...+-.  ++.   + +-++..+|..+++               .......+..+.+++||+|++++-
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            379999999998776643  222   2 3479999986543               011223578899999999999874

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0086  Score=48.25  Aligned_cols=36  Identities=25%  Similarity=0.511  Sum_probs=31.8

Q ss_pred             CCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          160 GGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .|.+|.|+|. |.+|....+.++.+|++|++..++++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~   64 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE   64 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEEeccccccccccccccccCccccccccccc
Confidence            5789999995 99999999999999999998876543

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.85  E-value=0.0061  Score=49.73  Aligned_cols=30  Identities=27%  Similarity=0.411  Sum_probs=24.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhC-CCEEEEEC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF-GCNVLYNS  191 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~-G~~V~~~~  191 (331)
                      .+|||.|||+||+.+++.+... .++|+..+
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaIN   33 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGIT   33 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence            4899999999999999998753 46776544

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.76  E-value=0.055  Score=45.61  Aligned_cols=122  Identities=16%  Similarity=0.218  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCC---
Q 020073          119 DAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSK---  194 (331)
Q Consensus       119 ~vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~---  194 (331)
                      -+|-.+++-+|+.+|-                    .+++|+..++.|+|.|.-|..+|+.+...|. +++.+|+..   
T Consensus         4 GTaaV~LAgll~a~~~--------------------~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~   63 (222)
T d1vl6a1           4 GTAVVVSAAFLNALKL--------------------TEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILN   63 (222)
T ss_dssp             HHHHHHHHHHHHHHHH--------------------HTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECC
T ss_pred             hHHHHHHHHHHHHHHH--------------------hCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEE
Confidence            3556677777876664                    2456899999999999999999999988777 688888751   


Q ss_pred             --C---CC------------CccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHH
Q 020073          195 --K---PV------------PYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEM  257 (331)
Q Consensus       195 --~---~~------------~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al  257 (331)
                        .   ..            ......++.+++..++++...-     +.+++.++.+..|.+..++.=.|...---|.+ 
T Consensus        64 ~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt~~~e~~-  137 (222)
T d1vl6a1          64 ENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANPVPEIDPE-  137 (222)
T ss_dssp             TTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSSSCSSCHH-
T ss_pred             cCcccccccHHHHHHHhhhcchhhhcchHhhccCcceecccc-----ccccccHHHHhhcCCCCEEEecCCCccchhhh-
Confidence              1   00            0112357889999999877653     57789999999999999999988876544433 


Q ss_pred             HHHHHhCCce
Q 020073          258 VRCLVRGEIA  267 (331)
Q Consensus       258 ~~aL~~~~i~  267 (331)
                       .+-..|+..
T Consensus       138 -~a~~~G~ai  146 (222)
T d1vl6a1         138 -LAREAGAFI  146 (222)
T ss_dssp             -HHHHTTCSE
T ss_pred             -hheeccceE
Confidence             445567654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.75  E-value=0.0037  Score=50.68  Aligned_cols=37  Identities=22%  Similarity=0.344  Sum_probs=32.4

Q ss_pred             CCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          160 GGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       160 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      .|++|.|.|. |.+|+...+.++.+|++|++.++++++
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~   64 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEK   64 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccc
Confidence            4789999995 999999999999999999988876543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0039  Score=53.83  Aligned_cols=39  Identities=23%  Similarity=0.428  Sum_probs=35.2

Q ss_pred             CccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          156 GSKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       156 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      |.+|.||++.|-| .+.||+++|+.|...|++|++.+|+.
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4579999999999 58899999999999999999998864

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.0051  Score=48.62  Aligned_cols=62  Identities=13%  Similarity=0.027  Sum_probs=44.2

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC----------CCccc-------cCCHHh-hhcCCCEEEEeccCChh
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP----------VPYAF-------YSNVCE-LAANSDALIICCALTDQ  224 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~----------~~~~~-------~~~l~e-ll~~aDiV~l~~P~t~~  224 (331)
                      .+.|+|+|.+|+.+++.|...|.+|++.+..++.          .++..       ...|++ -+.+||.|+++++....
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~   84 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD   84 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence            5899999999999999999999999988766531          11110       112333 26778989888876544

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.62  E-value=0.0094  Score=51.49  Aligned_cols=38  Identities=29%  Similarity=0.465  Sum_probs=34.5

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      +|+||++.|.| .+.||+++|+.|...|++|+..+|+.+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~   41 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEK   41 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            58999999999 678999999999999999999998753

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.59  E-value=0.046  Score=44.42  Aligned_cols=92  Identities=22%  Similarity=0.305  Sum_probs=61.2

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhC-CCEEEEE-CCCC-CC-C--------Cc--cccCCHHhhhcCCCEEEEeccCChhhh
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAF-GCNVLYN-SRSK-KP-V--------PY--AFYSNVCELAANSDALIICCALTDQTR  226 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~-~~~~-~~-~--------~~--~~~~~l~ell~~aDiV~l~~P~t~~t~  226 (331)
                      .+|||+| .|-.|+++.+.|... .++|.+. +++. .. .        ..  ....+.+++..++|+|++++|.... .
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s-~   80 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS-Y   80 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH-H
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHH-H
Confidence            5899999 799999999999864 3466554 2222 11 0        10  1124567777889999999997643 3


Q ss_pred             hhccHHHHhcCCCCcEEEEcCCCCccCHHHHHHH
Q 020073          227 RMINREVMLALGKEGIIVNVGRGAVIDENEMVRC  260 (331)
Q Consensus       227 ~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~a  260 (331)
                      .++     ... .+..+||.|..==.+....++.
T Consensus        81 ~~~-----~~~-~~~~VIDlSadfRl~~~~~y~~  108 (176)
T d1vkna1          81 DLV-----REL-KGVKIIDLGADFRFDDPGVYRE  108 (176)
T ss_dssp             HHH-----TTC-CSCEEEESSSTTTCSSHHHHHH
T ss_pred             HHH-----Hhh-ccceEEecCccccccchhhHHH
Confidence            233     333 5789999998777766555553

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.56  E-value=0.017  Score=46.77  Aligned_cols=37  Identities=24%  Similarity=0.398  Sum_probs=33.6

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP  196 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~  196 (331)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.|++.++
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~k   66 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDK   66 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHH
Confidence            58899999999999999999999996 89999987765

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.55  E-value=0.0076  Score=45.75  Aligned_cols=36  Identities=25%  Similarity=0.525  Sum_probs=32.6

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      .+++.|||.|.+|-++|..++.+|.+|+.+.+...-
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~i   57 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI   57 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhccc
Confidence            378999999999999999999999999999887543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.53  E-value=0.0033  Score=51.01  Aligned_cols=36  Identities=14%  Similarity=0.203  Sum_probs=30.2

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEE-EEECCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNV-LYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V-~~~~~~~~  195 (331)
                      .|.+|.|+|.|.||...++.++.+|.++ ++.++++.
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~   64 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVES   64 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHH
Confidence            5889999999999999999999999965 55666543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.51  E-value=0.0081  Score=45.88  Aligned_cols=35  Identities=29%  Similarity=0.397  Sum_probs=32.1

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      +++.|||.|.||-++|..|..+|++|..+.+.+..
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~   58 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI   58 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEecccc
Confidence            68999999999999999999999999999876654

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.50  E-value=0.013  Score=50.52  Aligned_cols=86  Identities=17%  Similarity=0.187  Sum_probs=56.3

Q ss_pred             CCCceEEEEec-C--hHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHh
Q 020073          159 LGGKRVGIVGL-G--NIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVML  235 (331)
Q Consensus       159 l~g~~vgIiG~-G--~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~  235 (331)
                      |+||++.|.|. |  .||.++|+.|...|++|+..+|+.+.  ......+.+....+.++..-+....+...+++ +..+
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~--~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~   79 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESL--EKRVRPIAQELNSPYVYELDVSKEEHFKSLYN-SVKK   79 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTT--HHHHHHHHHHTTCCCEEECCTTCHHHHHHHHH-HHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHhhCCceeEeeecccchhhHHHHHH-HHHH
Confidence            88999999996 4  49999999999999999999987432  11122344455566665555544445555553 3344


Q ss_pred             cCCCCcEEEEcC
Q 020073          236 ALGKEGIIVNVG  247 (331)
Q Consensus       236 ~mk~ga~lIn~s  247 (331)
                      ...+--++||.+
T Consensus        80 ~~g~id~lV~na   91 (274)
T d2pd4a1          80 DLGSLDFIVHSV   91 (274)
T ss_dssp             HTSCEEEEEECC
T ss_pred             HcCCCCeEEeec
Confidence            454445566543

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0062  Score=52.36  Aligned_cols=88  Identities=17%  Similarity=0.206  Sum_probs=53.0

Q ss_pred             ccCCCceEEEEecCh-HHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCCh--hhhhhccHHH
Q 020073          157 SKLGGKRVGIVGLGN-IGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTD--QTRRMINREV  233 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~-IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~--~t~~li~~~~  233 (331)
                      +.|+||++.|-|.+. ||+++|+.|...|++|+..+|+.++... ....+.+.  ...+....|-.+.  +...++ +..
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~-~~~~~~~~--~~~~~~~~~Dvs~~~~v~~~~-~~i   78 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEE-TAAKCKGL--GAKVHTFVVDCSNREDIYSSA-KKV   78 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHT--TCCEEEEECCTTCHHHHHHHH-HHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHhc--CCcEEEEEeeCCCHHHHHHHH-HHH
Confidence            358999999999655 9999999999999999999987543100 00112211  2344444444333  233344 223


Q ss_pred             HhcCCCCcEEEEcCC
Q 020073          234 MLALGKEGIIVNVGR  248 (331)
Q Consensus       234 l~~mk~ga~lIn~sr  248 (331)
                      .+.+.+=-++||.+.
T Consensus        79 ~~~~g~idilinnag   93 (244)
T d1yb1a_          79 KAEIGDVSILVNNAG   93 (244)
T ss_dssp             HHHTCCCSEEEECCC
T ss_pred             HHHcCCCceeEeecc
Confidence            344544456666654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.43  E-value=0.0082  Score=45.26  Aligned_cols=34  Identities=24%  Similarity=0.434  Sum_probs=31.5

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      +++.|||.|.||-++|..+..+|.+|+.+.+...
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            7899999999999999999999999999887654

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.012  Score=50.02  Aligned_cols=40  Identities=23%  Similarity=0.309  Sum_probs=35.1

Q ss_pred             ccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          157 SKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       157 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      +.|+||++.|-| .+.||+++|+.|...|++|+..+|+.+.
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~   41 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSG   41 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            368999999999 5669999999999999999999987643

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.37  E-value=0.014  Score=47.19  Aligned_cols=60  Identities=7%  Similarity=-0.001  Sum_probs=41.6

Q ss_pred             ceEEEEecChHH--HHHHHHHhh---CC-CEEEEECCCCCC----------------CC----ccccCCHHhhhcCCCEE
Q 020073          162 KRVGIVGLGNIG--LQVAKRLQA---FG-CNVLYNSRSKKP----------------VP----YAFYSNVCELAANSDAL  215 (331)
Q Consensus       162 ~~vgIiG~G~IG--~~~A~~l~~---~G-~~V~~~~~~~~~----------------~~----~~~~~~l~ell~~aDiV  215 (331)
                      .+|.|||.|++|  ..++..++.   +. -++..+|.....                ..    .....+..+.++.||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            479999999876  455555543   32 388999986532                00    11235788999999999


Q ss_pred             EEeccC
Q 020073          216 IICCAL  221 (331)
Q Consensus       216 ~l~~P~  221 (331)
                      +++...
T Consensus        82 v~ta~~   87 (169)
T d1s6ya1          82 TTQFRV   87 (169)
T ss_dssp             EECCCT
T ss_pred             EEcccc
Confidence            999854

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.27  E-value=0.011  Score=46.52  Aligned_cols=87  Identities=17%  Similarity=0.262  Sum_probs=54.0

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCCC--EEEEECCCCCC---------C----Cc----cccCCHHhhhcCCCEEEEecc-
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFGC--NVLYNSRSKKP---------V----PY----AFYSNVCELAANSDALIICCA-  220 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G~--~V~~~~~~~~~---------~----~~----~~~~~l~ell~~aDiV~l~~P-  220 (331)
                      .+|+||| .|.+|+.+|-.+...|.  ++..+|.....         .    ..    .....-.+.++.||+|+++.- 
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvitaG~   80 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI   80 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEeccc
Confidence            3799999 69999999999987666  78888864221         0    00    001122355789999999863 


Q ss_pred             -CChh-h--------hhhcc--HHHHhcCCCCcEEEEcCC
Q 020073          221 -LTDQ-T--------RRMIN--REVMLALGKEGIIVNVGR  248 (331)
Q Consensus       221 -~t~~-t--------~~li~--~~~l~~mk~ga~lIn~sr  248 (331)
                       ..+. +        ..++.  ...+....|.++++.++-
T Consensus        81 ~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtN  120 (142)
T d1o6za1          81 PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (142)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             ccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecC
Confidence             3321 1        11221  123444567888888853

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.011  Score=44.55  Aligned_cols=35  Identities=26%  Similarity=0.501  Sum_probs=32.0

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      +++.|||.|.+|-++|..++.+|.+|..+.+.+..
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~   56 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP   56 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchh
Confidence            68999999999999999999999999999887654

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.22  E-value=0.0082  Score=47.53  Aligned_cols=58  Identities=21%  Similarity=0.229  Sum_probs=41.8

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhCCC--EEEEECCCCCC--------------CCc----c---ccCCHHhhhcCCCEEEE
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAFGC--NVLYNSRSKKP--------------VPY----A---FYSNVCELAANSDALII  217 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~~~--------------~~~----~---~~~~l~ell~~aDiV~l  217 (331)
                      .+|+|||. |.+|+.+|..+...|.  ++..+|+....              ...    .   ...+-.+.+++||+|++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            37999995 9999999999988775  89998876421              000    0   01223468899999999


Q ss_pred             ec
Q 020073          218 CC  219 (331)
Q Consensus       218 ~~  219 (331)
                      +.
T Consensus        81 tA   82 (145)
T d1hyea1          81 TS   82 (145)
T ss_dssp             CC
T ss_pred             ec
Confidence            84

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.21  E-value=0.014  Score=42.83  Aligned_cols=59  Identities=12%  Similarity=0.192  Sum_probs=41.6

Q ss_pred             CCceEEEEecChHH-HHHHHHHhhCCCEEEEECCCCCC-------CCccc-cCCHHhhhcCCCEEEEe
Q 020073          160 GGKRVGIVGLGNIG-LQVAKRLQAFGCNVLYNSRSKKP-------VPYAF-YSNVCELAANSDALIIC  218 (331)
Q Consensus       160 ~g~~vgIiG~G~IG-~~~A~~l~~~G~~V~~~~~~~~~-------~~~~~-~~~l~ell~~aDiV~l~  218 (331)
                      +.+++=+||.|.+| .++|+.|+..|++|.++|....+       .+... ...-.+.+...|+|+..
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S   74 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVS   74 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEEC
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEEC
Confidence            56889999999999 66699999999999999986543       12211 11223345667777665

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=95.18  E-value=0.0083  Score=51.76  Aligned_cols=85  Identities=18%  Similarity=0.230  Sum_probs=54.4

Q ss_pred             cCCCceEEEEecC-hHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhc--CCCEEEEeccCCh--hhhhhccHH
Q 020073          158 KLGGKRVGIVGLG-NIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAA--NSDALIICCALTD--QTRRMINRE  232 (331)
Q Consensus       158 ~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~~P~t~--~t~~li~~~  232 (331)
                      +++||++.|-|.+ .||+++|+.|...|++|+..+|+.++..    ...+++.+  ..++..+.+-.+.  +...+++ +
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~----~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~-~   80 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAV----EVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQ-Q   80 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHH----HHHHHHHHHHTCCEEEEECCTTCHHHHHHHHH-H
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH----HHHHHHHHHhCCceEEEEccCCCHHHHHHHHH-H
Confidence            6899999999954 5999999999999999999998765411    01122211  2455566554433  3444443 3


Q ss_pred             HHhcCCCCcEEEEcC
Q 020073          233 VMLALGKEGIIVNVG  247 (331)
Q Consensus       233 ~l~~mk~ga~lIn~s  247 (331)
                      ..+...+=-++||.+
T Consensus        81 ~~~~~g~iDilVnnA   95 (260)
T d1h5qa_          81 IDADLGPISGLIANA   95 (260)
T ss_dssp             HHHHSCSEEEEEECC
T ss_pred             HHHHhCCCcEecccc
Confidence            334444445677765

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.17  E-value=0.044  Score=44.64  Aligned_cols=89  Identities=18%  Similarity=0.250  Sum_probs=53.5

Q ss_pred             CceEEEEe-cChHHHHHHHHHhhC-CCEEEEE-CCCCC-C-----CCc-------cccCCHHhhhcCCCEEEEeccCChh
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQAF-GCNVLYN-SRSKK-P-----VPY-------AFYSNVCELAANSDALIICCALTDQ  224 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~-~~~~~-~-----~~~-------~~~~~l~ell~~aDiV~l~~P~t~~  224 (331)
                      .-+||||| .|-.|+++.+.|... .+++.+. +++.. .     ...       ......++...++|+|++++|....
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s   84 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTT   84 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHH
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccchH
Confidence            35799999 799999999999863 4466544 33221 1     000       0112234567899999999996633


Q ss_pred             hhhhccHHHHhcCCCCcEEEEcCCCCccCHH
Q 020073          225 TRRMINREVMLALGKEGIIVNVGRGAVIDEN  255 (331)
Q Consensus       225 t~~li~~~~l~~mk~ga~lIn~srg~~vd~~  255 (331)
                            .+....+......|+.+.+.-....
T Consensus        85 ------~~~~~~l~~~~~~v~~~~~~~~~~~  109 (183)
T d2cvoa1          85 ------QEIIKGLPQELKIVDLSADFRLRDI  109 (183)
T ss_dssp             ------HHHHHTSCSSCEEEECSSTTTCSCH
T ss_pred             ------HHHHHHHHhcCcccccchhhhcccc
Confidence                  2333445455555665555544433

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.16  E-value=0.015  Score=45.78  Aligned_cols=83  Identities=11%  Similarity=0.090  Sum_probs=50.9

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhCC---CEEEEECCCC--CC-CC--c--cccCCH-HhhhcCCCEEEEeccCChhhhhhc
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAFG---CNVLYNSRSK--KP-VP--Y--AFYSNV-CELAANSDALIICCALTDQTRRMI  229 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~G---~~V~~~~~~~--~~-~~--~--~~~~~l-~ell~~aDiV~l~~P~t~~t~~li  229 (331)
                      .+|||||. |-+|+++.+.|...+   .++.....+.  .+ ..  .  ....++ .+.+.++|++++++|... +..+.
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~-s~~~~   81 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEV-SRAHA   81 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHH-HHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcch-hhhhc
Confidence            47999994 999999999996433   3665543222  22 10  0  011122 345788999999998543 23232


Q ss_pred             cHHHHhcCCCCcEEEEcCCC
Q 020073          230 NREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       230 ~~~~l~~mk~ga~lIn~srg  249 (331)
                       ...   .+.|..+||.|.-
T Consensus        82 -~~~---~~~g~~VID~Ss~   97 (144)
T d2hjsa1          82 -ERA---RAAGCSVIDLSGA   97 (144)
T ss_dssp             -HHH---HHTTCEEEETTCT
T ss_pred             -ccc---ccCCceEEeechh
Confidence             222   3678999998753

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.14  E-value=0.02  Score=46.23  Aligned_cols=60  Identities=13%  Similarity=0.009  Sum_probs=41.4

Q ss_pred             CceEEEEecChHHHHHH--HHHhh-CC---CEEEEECCCCCC----------------CC--ccccCCHHhhhcCCCEEE
Q 020073          161 GKRVGIVGLGNIGLQVA--KRLQA-FG---CNVLYNSRSKKP----------------VP--YAFYSNVCELAANSDALI  216 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A--~~l~~-~G---~~V~~~~~~~~~----------------~~--~~~~~~l~ell~~aDiV~  216 (331)
                      .-+|.|||.|++|...+  ..++. ..   -+|+.+|..++.                .+  .....+..|.++.||+|+
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv   82 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM   82 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence            45899999999986532  33332 22   379999987643                01  122458899999999999


Q ss_pred             Eecc
Q 020073          217 ICCA  220 (331)
Q Consensus       217 l~~P  220 (331)
                      ++.-
T Consensus        83 itag   86 (167)
T d1u8xx1          83 AHIR   86 (167)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9973

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.022  Score=47.81  Aligned_cols=63  Identities=21%  Similarity=0.240  Sum_probs=47.9

Q ss_pred             CCCceEEEEe-cChHHHHHHHHHhhCCC--EEEEECCCCCC--C-----------CccccCCHHhhhcCCCEEEEeccC
Q 020073          159 LGGKRVGIVG-LGNIGLQVAKRLQAFGC--NVLYNSRSKKP--V-----------PYAFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       159 l~g~~vgIiG-~G~IG~~~A~~l~~~G~--~V~~~~~~~~~--~-----------~~~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      ..+++|.|.| .|.||+.+++.|...|.  +|++.+|++..  .           +.....++.++++.+|+++.|+..
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~   90 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   90 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccccccccc
Confidence            4678999999 89999999999977674  89998886543  0           111234677788999999988743

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=95.10  E-value=0.0077  Score=48.60  Aligned_cols=84  Identities=19%  Similarity=0.125  Sum_probs=51.5

Q ss_pred             ceEEEEec-ChHHHHHHHHHhh-CCCEEE-EECCCCCC--------------CCccccCCHHhhhcCCCEEEEeccCChh
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQA-FGCNVL-YNSRSKKP--------------VPYAFYSNVCELAANSDALIICCALTDQ  224 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~-~G~~V~-~~~~~~~~--------------~~~~~~~~l~ell~~aDiV~l~~P~t~~  224 (331)
                      -+|+|+|+ |+||+++++.+.. -++++. ++++...+              .+.....++++++..+|+|+=-.. .+.
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~-p~~   83 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR-PEG   83 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC-HHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEecc-HHH
Confidence            47999995 9999999998865 477765 45654322              112234578889999998876642 223


Q ss_pred             hhhhccHHHHhcCCCCcEEEEcCCCC
Q 020073          225 TRRMINREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       225 t~~li~~~~l~~mk~ga~lIn~srg~  250 (331)
                      +...+..  .  .+.+.-+|-...|-
T Consensus        84 ~~~~~~~--a--~~~~~~~ViGTTG~  105 (162)
T d1diha1          84 TLNHLAF--C--RQHGKGMVIGTTGF  105 (162)
T ss_dssp             HHHHHHH--H--HHTTCEEEECCCCC
T ss_pred             HHHHHHH--H--HhccceeEEecCCC
Confidence            3433321  1  23344455555663

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.10  E-value=0.0082  Score=48.49  Aligned_cols=37  Identities=14%  Similarity=0.288  Sum_probs=32.7

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP  196 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~  196 (331)
                      .+|+|.|||.|..|-..|..|+..|+ +|.++++....
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence            47899999999999999999999999 59888876543

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.09  E-value=0.023  Score=45.32  Aligned_cols=89  Identities=19%  Similarity=0.196  Sum_probs=60.5

Q ss_pred             CCCceEEEEe-c-ChHHHHHHHHHhhCCCEEEEECCCCC-CC----------------CccccCCHHhhhcCCCEEEEec
Q 020073          159 LGGKRVGIVG-L-GNIGLQVAKRLQAFGCNVLYNSRSKK-PV----------------PYAFYSNVCELAANSDALIICC  219 (331)
Q Consensus       159 l~g~~vgIiG-~-G~IG~~~A~~l~~~G~~V~~~~~~~~-~~----------------~~~~~~~l~ell~~aDiV~l~~  219 (331)
                      |.|++|++|| . .++-.+++..+..||+++....+..- +.                ......+++++++.+|+|..-.
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            5799999999 3 68999999999999999998876431 10                1123468999999999998755


Q ss_pred             cCChh------------hhhhc-cHHHHhcCCCCcEEEEcC
Q 020073          220 ALTDQ------------TRRMI-NREVMLALGKEGIIVNVG  247 (331)
Q Consensus       220 P~t~~------------t~~li-~~~~l~~mk~ga~lIn~s  247 (331)
                      -....            ....+ +......+|+.++|.-+.
T Consensus        81 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~l  121 (161)
T d1vlva2          81 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL  121 (161)
T ss_dssp             CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             eeeecccccchhhhccccceeeeehhhhcccCCCeeEecCC
Confidence            32110            11122 333344467788887653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.08  E-value=0.0064  Score=49.03  Aligned_cols=36  Identities=25%  Similarity=0.373  Sum_probs=30.7

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~  195 (331)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.+++++
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~   68 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEE   68 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhH
Confidence            37899999999999999999999887 6677777654

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.015  Score=46.00  Aligned_cols=87  Identities=16%  Similarity=0.191  Sum_probs=54.8

Q ss_pred             ceEEEEe-cChHHHHHHHHHh-h--CCCEEEEECCCCCC--------C-C--c----cccCCHHhhhcCCCEEEEec--c
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQ-A--FGCNVLYNSRSKKP--------V-P--Y----AFYSNVCELAANSDALIICC--A  220 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~-~--~G~~V~~~~~~~~~--------~-~--~----~~~~~l~ell~~aDiV~l~~--P  220 (331)
                      .+|+||| .|.+|+.+|-.+. .  ++-++..+|..+..        . .  .    ....+..+.+++||+|+++.  |
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~   80 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVR   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCcc
Confidence            4799999 5999999998764 3  45689999875422        0 0  0    01133456789999999987  3


Q ss_pred             CChh-hh-hhc--c-------HHHHhcCCCCcEEEEcCC
Q 020073          221 LTDQ-TR-RMI--N-------REVMLALGKEGIIVNVGR  248 (331)
Q Consensus       221 ~t~~-t~-~li--~-------~~~l~~mk~ga~lIn~sr  248 (331)
                      ..+. ++ .++  |       .+.+.+..|.+++|.++.
T Consensus        81 ~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN  119 (145)
T d2cmda1          81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN  119 (145)
T ss_dssp             CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence            2321 11 122  2       223344568889999874

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.05  E-value=0.0093  Score=45.54  Aligned_cols=32  Identities=28%  Similarity=0.343  Sum_probs=29.3

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRS  193 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~  193 (331)
                      +++.|||.|.||-++|..++.+|.+|..+.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            57999999999999999999999999887654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.04  E-value=0.013  Score=44.50  Aligned_cols=34  Identities=26%  Similarity=0.502  Sum_probs=31.0

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      +++.|||.|.||-++|..++.+|.+|..+.+...
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            7899999999999999999999999998876654

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.014  Score=44.59  Aligned_cols=34  Identities=35%  Similarity=0.432  Sum_probs=31.7

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      +++.|||.|.||-++|..++.+|.+|+.+.+...
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            6899999999999999999999999999988754

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.02  E-value=0.012  Score=49.44  Aligned_cols=35  Identities=37%  Similarity=0.508  Sum_probs=32.2

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      ||+|.|||.|.-|-..|..|+..|++|++++++..
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~   35 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGK   35 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            68999999999999999999999999999987643

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.02  E-value=0.013  Score=50.25  Aligned_cols=38  Identities=24%  Similarity=0.529  Sum_probs=33.4

Q ss_pred             ccCCCceEEEEecC---hHHHHHHHHHhhCCCEEEEECCCC
Q 020073          157 SKLGGKRVGIVGLG---NIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       157 ~~l~g~~vgIiG~G---~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      .+|+||++.|-|.+   .||+++|++|...|++|++.+++.
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            36899999999975   599999999999999998887764

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.02  E-value=0.018  Score=43.25  Aligned_cols=38  Identities=18%  Similarity=0.165  Sum_probs=33.7

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      ..++++.|||.|.||-++|..|+.+|.+|..+.+.+..
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~   57 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL   57 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchh
Confidence            34789999999999999999999999999999886543

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.01  E-value=0.019  Score=41.46  Aligned_cols=58  Identities=19%  Similarity=0.286  Sum_probs=41.4

Q ss_pred             CceEEEEecChHHH-HHHHHHhhCCCEEEEECCCCCC-------CCcccc-CCHHhhhcCCCEEEEe
Q 020073          161 GKRVGIVGLGNIGL-QVAKRLQAFGCNVLYNSRSKKP-------VPYAFY-SNVCELAANSDALIIC  218 (331)
Q Consensus       161 g~~vgIiG~G~IG~-~~A~~l~~~G~~V~~~~~~~~~-------~~~~~~-~~l~ell~~aDiV~l~  218 (331)
                      +++|=+||.|.+|. ++|+.|+..|+.|.++|+...+       .+...+ ..-.+.+.++|+|+..
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~S   67 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKT   67 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEEC
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEe
Confidence            35788999999996 7899999999999999987644       222211 1122345678877765

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.029  Score=52.03  Aligned_cols=79  Identities=16%  Similarity=0.164  Sum_probs=56.2

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC--------------CC-----------------c--c-c--
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP--------------VP-----------------Y--A-F--  201 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~--------------~~-----------------~--~-~--  201 (331)
                      |++++|.|||+|.+|.++++.|...|. ++..+|...=.              .+                 .  . .  
T Consensus        35 l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  114 (426)
T d1yovb1          35 LDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN  114 (426)
T ss_dssp             HHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECS
T ss_pred             HhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeec
Confidence            678899999999999999999998888 68777753210              00                 0  0 0  


Q ss_pred             --cCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCC
Q 020073          202 --YSNVCELAANSDALIICCALTDQTRRMINREVMLALG  238 (331)
Q Consensus       202 --~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk  238 (331)
                        ....++.+++.|+|+.++- +.+++..++..-+...|
T Consensus       115 ~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~k  152 (426)
T d1yovb1         115 KIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLLN  152 (426)
T ss_dssp             CGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTCC
T ss_pred             cccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhhc
Confidence              0122567899999998875 55778888877665443

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.017  Score=49.29  Aligned_cols=38  Identities=34%  Similarity=0.442  Sum_probs=34.1

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .|+||++.|.| .+.||+++|+.|...|++|+..+|+.+
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~   42 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQA   42 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            48999999999 567999999999999999999998643

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.93  E-value=0.031  Score=41.65  Aligned_cols=58  Identities=10%  Similarity=0.099  Sum_probs=46.1

Q ss_pred             CceEEEEec----------ChHHHHHHHHHhhCCCEEEEECCCCCC----CCccccCCHHhhhcCCCEEEEe
Q 020073          161 GKRVGIVGL----------GNIGLQVAKRLQAFGCNVLYNSRSKKP----VPYAFYSNVCELAANSDALIIC  218 (331)
Q Consensus       161 g~~vgIiG~----------G~IG~~~A~~l~~~G~~V~~~~~~~~~----~~~~~~~~l~ell~~aDiV~l~  218 (331)
                      .++|||+|+          .+-.-.+.+.|...|++|.+||+....    .......++++++..||+|++.
T Consensus        15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~~~~~~~~~~l~~~~~~sDiII~~   86 (108)
T d1dlja3          15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVTN   86 (108)
T ss_dssp             SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEECS
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHhccCCEEEeCHHHHHhhCCEEEEc
Confidence            358999997          467788999999999999999998765    1223456899999999977654

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.86  E-value=0.0097  Score=45.45  Aligned_cols=35  Identities=23%  Similarity=0.378  Sum_probs=32.4

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      +++.|||.|.||-++|..+..+|++|.+..+.+..
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI   60 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence            68999999999999999999999999999887654

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=94.86  E-value=0.0049  Score=53.51  Aligned_cols=39  Identities=36%  Similarity=0.425  Sum_probs=34.6

Q ss_pred             ccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          157 SKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       157 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      ++|+||++.|-| .+.||+++|+.|...|++|++.+|+.+
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~   42 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE   42 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            469999999998 678999999999999999999888653

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.83  E-value=0.023  Score=45.03  Aligned_cols=62  Identities=15%  Similarity=0.227  Sum_probs=49.2

Q ss_pred             CCCceEEEEec---ChHHHHHHHHHhhCCCEEEEECCCCCC-------------CCccccCCHHhhhcCCCEEEEecc
Q 020073          159 LGGKRVGIVGL---GNIGLQVAKRLQAFGCNVLYNSRSKKP-------------VPYAFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       159 l~g~~vgIiG~---G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~~~~~~~~l~ell~~aDiV~l~~P  220 (331)
                      |.|++|++||=   +++.++++..+..||+++.+..+..-.             .......+++++++.+|+|....-
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~   79 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRI   79 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCC
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecc
Confidence            78999999995   789999999999999999888764321             112235789999999998887543

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.83  E-value=0.017  Score=43.97  Aligned_cols=36  Identities=31%  Similarity=0.377  Sum_probs=32.9

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      ++++.|||.|.+|-++|..|+..|.+|.++.+.+..
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL   65 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecccc
Confidence            579999999999999999999999999999887654

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.79  E-value=0.026  Score=46.22  Aligned_cols=90  Identities=10%  Similarity=0.020  Sum_probs=63.3

Q ss_pred             cCCCceEEEEe-c-ChHHHHHHHHHhhCCCEEEEECCCCCC-----------------CCccccCCHHhhhcCCCEEEEe
Q 020073          158 KLGGKRVGIVG-L-GNIGLQVAKRLQAFGCNVLYNSRSKKP-----------------VPYAFYSNVCELAANSDALIIC  218 (331)
Q Consensus       158 ~l~g~~vgIiG-~-G~IG~~~A~~l~~~G~~V~~~~~~~~~-----------------~~~~~~~~l~ell~~aDiV~l~  218 (331)
                      .|.|.+|++|| . -++..+++..+..||+++.+..+..-.                 .......+++++++.+|+|..-
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~   81 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD   81 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence            47899999999 4 589999999999999999998874311                 0122356899999999998875


Q ss_pred             ccCC--h--h---------hhhhcc-HHHHhcCCCCcEEEEcC
Q 020073          219 CALT--D--Q---------TRRMIN-REVMLALGKEGIIVNVG  247 (331)
Q Consensus       219 ~P~t--~--~---------t~~li~-~~~l~~mk~ga~lIn~s  247 (331)
                      .=..  .  .         ....++ +.....+|+.++|.-+.
T Consensus        82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          82 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             hhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            5211  0  0         112233 44445678889888765

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.75  E-value=0.02  Score=43.62  Aligned_cols=37  Identities=24%  Similarity=0.361  Sum_probs=33.1

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      .++++.|||.|.+|-++|..+..+|.+|+++.+....
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            4689999999999999999999999999999876543

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.69  E-value=0.015  Score=44.94  Aligned_cols=84  Identities=18%  Similarity=0.209  Sum_probs=47.7

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhCCCEEEE-ECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCC
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAFGCNVLY-NSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGK  239 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~~-~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~  239 (331)
                      .+|+|+|+ |+||+.+++.+...|+++.+ ++++           ..+.+..+|+|+=-.. .+.+...+...    .+.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~-----------~~~~~~~~DVvIDFS~-p~~~~~~l~~~----~~~   64 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN-----------GVEELDSPDVVIDFSS-PEALPKTVDLC----KKY   64 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETT-----------EEEECSCCSEEEECSC-GGGHHHHHHHH----HHH
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCC-----------cHHHhccCCEEEEecC-HHHHHHHHHHH----Hhc
Confidence            37999996 99999999999998998764 3322           1233456787664431 22333333221    133


Q ss_pred             CcEEEEcCCCCccCHHHHHHHH
Q 020073          240 EGIIVNVGRGAVIDENEMVRCL  261 (331)
Q Consensus       240 ga~lIn~srg~~vd~~al~~aL  261 (331)
                      +.-+|-...|---++...++.+
T Consensus        65 ~~p~ViGTTG~~~~~~~~i~~~   86 (128)
T d1vm6a3          65 RAGLVLGTTALKEEHLQMLREL   86 (128)
T ss_dssp             TCEEEECCCSCCHHHHHHHHHH
T ss_pred             CCCEEEEcCCCCHHHHHHHHHH
Confidence            3344544455433334444444

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.67  E-value=0.075  Score=43.81  Aligned_cols=129  Identities=13%  Similarity=0.203  Sum_probs=82.3

Q ss_pred             HHHHHHhhCCCEEEEECCCCCC----------CCccccCCHHhhhcCCCEEEEe-ccCChhhhhhccHHHHhcCCCCcEE
Q 020073          175 QVAKRLQAFGCNVLYNSRSKKP----------VPYAFYSNVCELAANSDALIIC-CALTDQTRRMINREVMLALGKEGII  243 (331)
Q Consensus       175 ~~A~~l~~~G~~V~~~~~~~~~----------~~~~~~~~l~ell~~aDiV~l~-~P~t~~t~~li~~~~l~~mk~ga~l  243 (331)
                      ..++.|...|++|.+=.-....          .+.....+-++++.++|+|+-. .|...+    .+.+.++.||+|+++
T Consensus        21 ~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~l   96 (194)
T d1l7da2          21 EVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAVL   96 (194)
T ss_dssp             HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----cchhHhhhccCceEE
Confidence            5788899999999875432221          2333345778999999987744 454433    234567889999999


Q ss_pred             EEcCCCCccCHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 020073          244 VNVGRGAVIDENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALF  319 (331)
Q Consensus       244 In~srg~~vd~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~  319 (331)
                      |..--  .....+++++|.+.++...++|....-    ..--.+|  ++|+    .+.=+-.+....+++|+-+|+
T Consensus        97 i~~l~--p~~~~~~~~~l~~~~it~~a~e~ipRi----sraQ~md--~Lss----qa~iaG~~a~~~~a~~l~~~~  160 (194)
T d1l7da2          97 MCHLG--ALTNRPVVEALTKRKITAYAMELMPRI----SRAQSMD--ILSS----QSNLVAADASPLFAKNLLNFL  160 (194)
T ss_dssp             EEECC--GGGCHHHHHHHHHTTCEEEEGGGCCCS----GGGGGGC--HHHH----HHHHGHHHHHHHHHHHHHHHH
T ss_pred             EEecc--cccchhHHHHHHhcCceEEeeeccccc----CCCCccC--CcCc----chhhhhHhHHHHHHHHHHhhh
Confidence            98653  456778999999999999988874211    1111122  1121    111123355566778888877

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=94.67  E-value=0.012  Score=50.82  Aligned_cols=38  Identities=29%  Similarity=0.382  Sum_probs=34.0

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      +|+||++.|-|. +.||+++|+.|...|++|+..+|+.+
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE   40 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            689999999995 56999999999999999999988653

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.65  E-value=0.022  Score=48.49  Aligned_cols=37  Identities=30%  Similarity=0.451  Sum_probs=33.3

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      +|+||++.|-|. +.||+++|+.|...|++|+..+|+.
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999995 6799999999999999999998864

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.61  E-value=0.019  Score=42.50  Aligned_cols=40  Identities=18%  Similarity=0.173  Sum_probs=33.0

Q ss_pred             CCccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          155 LGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       155 ~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      ...+.+||+|+|||.|.-|..+|.-+...+-++++..++.
T Consensus        26 ~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          26 EPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             CGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             chhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            3457899999999999999999999998877766555443

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.55  E-value=0.021  Score=43.33  Aligned_cols=35  Identities=31%  Similarity=0.365  Sum_probs=31.7

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      ++++.|||.|.+|-++|..|..+|.+|..+.+.+.
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            36899999999999999999999999999987654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.53  E-value=0.017  Score=44.22  Aligned_cols=36  Identities=19%  Similarity=0.238  Sum_probs=32.4

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      .+++.|||.|.||-++|..++.+|.+|+.+.+.+.-
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~i   61 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL   61 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccc
Confidence            368999999999999999999999999999887643

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.51  E-value=0.028  Score=45.85  Aligned_cols=40  Identities=25%  Similarity=0.290  Sum_probs=35.7

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      .....|+|+|||.|..|-+.|..|+..|++|+++++.+..
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI   78 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence            3467899999999999999999999999999999987653

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.49  E-value=0.033  Score=47.40  Aligned_cols=38  Identities=21%  Similarity=0.218  Sum_probs=33.6

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .|+||++.|-|. +.||+++|+.|...|++|+..+|+.+
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG   40 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            378999999995 66999999999999999999998643

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.46  E-value=0.0079  Score=52.19  Aligned_cols=39  Identities=31%  Similarity=0.442  Sum_probs=34.8

Q ss_pred             CccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          156 GSKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       156 ~~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      ...|+||++.|-| .+.||+++|+.|...|++|++.+++.
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            4569999999999 78999999999999999999887654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.027  Score=48.36  Aligned_cols=105  Identities=15%  Similarity=0.142  Sum_probs=64.0

Q ss_pred             ccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCCh--hhhhhccHHH
Q 020073          157 SKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTD--QTRRMINREV  233 (331)
Q Consensus       157 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~--~t~~li~~~~  233 (331)
                      ..|+||++.|.| .+.||+++|+.|...|++|++++|+.++... ....+.+.-....++.+.|-.+.  +.+.+++ ..
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~-~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~-~~   83 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEE-LAAECKSAGYPGTLIPYRCDLSNEEDILSMFS-AI   83 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHTTCSSEEEEEECCTTCHHHHHHHHH-HH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHhcCCCceEEEEEccCCCHHHHHHHHH-HH
Confidence            469999999999 5789999999999999999999886432000 01112222223467776665543  4555664 33


Q ss_pred             HhcCCCCcEEEEcCCCC----c--cCHHHHHHHHHh
Q 020073          234 MLALGKEGIIVNVGRGA----V--IDENEMVRCLVR  263 (331)
Q Consensus       234 l~~mk~ga~lIn~srg~----~--vd~~al~~aL~~  263 (331)
                      .+..++=-++||.+-..    +  ++.+...+.++.
T Consensus        84 ~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~  119 (257)
T d1xg5a_          84 RSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNV  119 (257)
T ss_dssp             HHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred             HHhcCCCCEEEecccccCCCccccccHHHHHhhhhh
Confidence            34444445777776432    2  445554444444

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.44  E-value=0.02  Score=44.96  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=30.9

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCC--CEEEEECCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFG--CNVLYNSRSK  194 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~  194 (331)
                      +||+|.|||.|.+|-++|..|+..|  .+|+++++.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            4899999999999999999999877  4888888765

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=94.38  E-value=0.012  Score=50.31  Aligned_cols=38  Identities=21%  Similarity=0.387  Sum_probs=33.5

Q ss_pred             cCCCceEEEEecC-hHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVGLG-NIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .|.||++.|.|.+ .||+++|+.|...|++|+..+|+.+
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER   40 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4889999999965 5999999999999999999988653

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.36  E-value=0.011  Score=47.82  Aligned_cols=35  Identities=23%  Similarity=0.389  Sum_probs=30.7

Q ss_pred             CCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          160 GGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      .|.+|.|.| .|.+|...++.++.+|++|++..++.
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~   60 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD   60 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeeccc
Confidence            478999988 59999999999999999998877654

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=94.35  E-value=0.021  Score=45.34  Aligned_cols=59  Identities=24%  Similarity=0.352  Sum_probs=47.2

Q ss_pred             CCceEEEEec---ChHHHHHHHHHhhCCCEEEEECCCCCC---CCccccCCHHhhhcCCCEEEEe
Q 020073          160 GGKRVGIVGL---GNIGLQVAKRLQAFGCNVLYNSRSKKP---VPYAFYSNVCELAANSDALIIC  218 (331)
Q Consensus       160 ~g~~vgIiG~---G~IG~~~A~~l~~~G~~V~~~~~~~~~---~~~~~~~~l~ell~~aDiV~l~  218 (331)
                      .|.+|++||=   +++.++++..+..||+++.+..+..-.   .......+++++++.+|+|...
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~~~~~~~~~~~~ea~~~aDviy~~   66 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLL   66 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhccccceeEEEechhccccCceeeee
Confidence            5889999994   689999999999999999887765322   2233456899999999998764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.32  E-value=0.012  Score=50.75  Aligned_cols=39  Identities=33%  Similarity=0.476  Sum_probs=34.3

Q ss_pred             ccCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          157 SKLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       157 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      +.|+||++.|-|. +.||+++|+.|...|++|+..+|+.+
T Consensus         1 krL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (260)
T d1zema1           1 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNRE   40 (260)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3589999999995 56999999999999999999998643

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.31  E-value=0.032  Score=45.23  Aligned_cols=93  Identities=12%  Similarity=0.165  Sum_probs=59.1

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhC-CCEEEEE-CCCC----CC-C--------C-----ccccCCHHhhhcCCCEEEEecc
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAF-GCNVLYN-SRSK----KP-V--------P-----YAFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~-G~~V~~~-~~~~----~~-~--------~-----~~~~~~l~ell~~aDiV~l~~P  220 (331)
                      .+|+||| .|-.|+++.+.|... .++|... .++.    .+ .        +     .....+.+......|++++++|
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp   81 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA   81 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence            5899999 899999999999875 6676543 2211    11 0        0     0112344556788999999998


Q ss_pred             CChhhhhhccHHHHhcCCCCcEEEEcCCCCccCHHHHHH
Q 020073          221 LTDQTRRMINREVMLALGKEGIIVNVGRGAVIDENEMVR  259 (331)
Q Consensus       221 ~t~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~al~~  259 (331)
                      .....+ +. .   ...+.|..+|+.|..--.+....+.
T Consensus        82 ~~~s~~-~~-~---~~~~~~~~vIDlSadfRl~~~~~~~  115 (179)
T d2g17a1          82 HEVSHD-LA-P---QFLQAGCVVFDLSGAFRVNDRAFYE  115 (179)
T ss_dssp             HHHHHH-HH-H---HHHHTTCEEEECSSTTSSSCHHHHH
T ss_pred             chhHHH-Hh-h---hhhhcCceeeccccccccccccccc
Confidence            543322 21 1   1246788999998776665555444

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.27  E-value=0.039  Score=47.12  Aligned_cols=62  Identities=21%  Similarity=0.144  Sum_probs=46.4

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCC--------------Cc-------cccCCHHhhhcCCCEEEEec
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPV--------------PY-------AFYSNVCELAANSDALIICC  219 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~--------------~~-------~~~~~l~ell~~aDiV~l~~  219 (331)
                      ++|.|.| .|.||+.+++.|...|++|++..|+....              +.       ....++.+.+..++.++.+.
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~~   83 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISAL   83 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhhh
Confidence            5699999 69999999999999999999998865420              11       11134567788899988887


Q ss_pred             cCCh
Q 020073          220 ALTD  223 (331)
Q Consensus       220 P~t~  223 (331)
                      +...
T Consensus        84 ~~~~   87 (312)
T d1qyda_          84 AGGV   87 (312)
T ss_dssp             CCSS
T ss_pred             hhcc
Confidence            6543

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.25  E-value=0.023  Score=42.55  Aligned_cols=35  Identities=23%  Similarity=0.382  Sum_probs=31.9

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      +++.|||.|.+|-++|..++.+|.+|+.+.+.+.-
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            78999999999999999999999999999876543

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.24  E-value=0.011  Score=50.70  Aligned_cols=87  Identities=21%  Similarity=0.402  Sum_probs=53.0

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCCh--hhhhhccHHHH
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTD--QTRRMINREVM  234 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~--~t~~li~~~~l  234 (331)
                      +|+||++.|-|. +.||+++|+.|...|++|++.+|+.++... ...++.+.. ..++..+.+-.+.  +.+.++++ ..
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~-~~~~l~~~~-g~~~~~~~~Dv~~~~~v~~~~~~-~~   78 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASE-AAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEA-VK   78 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHH-HH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHHHh-CCcEEEEEccCCCHHHHHHHHHH-HH
Confidence            589999999995 569999999999999999999886532100 011121111 2455555555443  34455532 33


Q ss_pred             hcCCCCcEEEEcC
Q 020073          235 LALGKEGIIVNVG  247 (331)
Q Consensus       235 ~~mk~ga~lIn~s  247 (331)
                      +.+.+=-++||.+
T Consensus        79 ~~~g~iDiLVnnA   91 (251)
T d1vl8a_          79 EKFGKLDTVVNAA   91 (251)
T ss_dssp             HHHSCCCEEEECC
T ss_pred             HHcCCCCEEEECC
Confidence            3343334666653

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.23  E-value=0.007  Score=46.45  Aligned_cols=81  Identities=16%  Similarity=0.140  Sum_probs=49.0

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC------CCccc----c---CCHHhh-hcCCCEEEEeccCChhhhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYAF----Y---SNVCEL-AANSDALIICCALTDQTRR  227 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~~----~---~~l~el-l~~aDiV~l~~P~t~~t~~  227 (331)
                      |.+.|+|+|.+|+.+++.|++.+  |.+.+..+..      .+...    .   ..|.++ +.+|+.++++.+.+..+. 
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~~--i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~-   77 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGSE--VFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETI-   77 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGGG--EEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHH-
T ss_pred             CEEEEECCCHHHHHHHHHHcCCC--CEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhH-
Confidence            46889999999999999997654  5556655543      11111    1   123332 678999999887654433 


Q ss_pred             hccHHHHhcCCCCc-EEEEc
Q 020073          228 MINREVMLALGKEG-IIVNV  246 (331)
Q Consensus       228 li~~~~l~~mk~ga-~lIn~  246 (331)
                       .-......+.|.. +++.+
T Consensus        78 -~~~~~~r~~~~~~~iia~~   96 (129)
T d2fy8a1          78 -HCILGIRKIDESVRIIAEA   96 (129)
T ss_dssp             -HHHHHHHHHCSSSCEEEEC
T ss_pred             -HHHHHHHHHCCCceEEEEE
Confidence             3233444455553 44433

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.062  Score=42.63  Aligned_cols=88  Identities=14%  Similarity=0.214  Sum_probs=58.1

Q ss_pred             CCCceEEEEec---ChHHHHHHHHHhhCCC-EEEEECCCCCC-------------CCccccCCHHhhhcCCCEEEEeccC
Q 020073          159 LGGKRVGIVGL---GNIGLQVAKRLQAFGC-NVLYNSRSKKP-------------VPYAFYSNVCELAANSDALIICCAL  221 (331)
Q Consensus       159 l~g~~vgIiG~---G~IG~~~A~~l~~~G~-~V~~~~~~~~~-------------~~~~~~~~l~ell~~aDiV~l~~P~  221 (331)
                      +.|.+|++||=   |++..+++..+..||. .+++..+....             .......+++++++++|+|...-..
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~   81 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ   81 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCCC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeeccc
Confidence            67999999994   6799999999999975 55666543221             1123357899999999999865322


Q ss_pred             Chh----------hhhhccHHHHhcCCCCcEEEEc
Q 020073          222 TDQ----------TRRMINREVMLALGKEGIIVNV  246 (331)
Q Consensus       222 t~~----------t~~li~~~~l~~mk~ga~lIn~  246 (331)
                      ...          ....++++.++.++++++|.-+
T Consensus        82 ~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHc  116 (160)
T d1ekxa2          82 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHP  116 (160)
T ss_dssp             GGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECC
T ss_pred             ccccchHHHHHHHHHhhccHHHHHhcCcceeeecC
Confidence            111          1122355566666666666655

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=94.18  E-value=0.026  Score=48.52  Aligned_cols=87  Identities=21%  Similarity=0.227  Sum_probs=52.3

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCCh--hhhhhccHHHH
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTD--QTRRMINREVM  234 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~--~t~~li~~~~l  234 (331)
                      .|+||++.|-|. +.||+++|+.|...|++|++.+|+.+.... ....+.+......++.+.+-.+.  +.+.+++ +..
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~-~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~-~~~   78 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEA-SKAAVLETAPDAEVLTTVADVSDEAQVEAYVT-ATT   78 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHHCTTCCEEEEECCTTSHHHHHHHHH-HHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHhhCCCCeEEEEeccCCCHHHHHHHHH-HHH
Confidence            378999999995 569999999999999999999986532100 01122222334556655554332  3444443 223


Q ss_pred             hcCCCCcEEEEc
Q 020073          235 LALGKEGIIVNV  246 (331)
Q Consensus       235 ~~mk~ga~lIn~  246 (331)
                      +++.+=-+|||.
T Consensus        79 ~~~G~iDiLVnn   90 (258)
T d1iy8a_          79 ERFGRIDGFFNN   90 (258)
T ss_dssp             HHHSCCSEEEEC
T ss_pred             HHhCCCCEEEEC
Confidence            333333466664

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=94.14  E-value=0.022  Score=48.30  Aligned_cols=63  Identities=16%  Similarity=0.249  Sum_probs=42.3

Q ss_pred             CceEEEEecChH----HHHHHHHHhhC--CCEEE-EECCCCCC-------C---CccccCCHHhhhc--CCCEEEEeccC
Q 020073          161 GKRVGIVGLGNI----GLQVAKRLQAF--GCNVL-YNSRSKKP-------V---PYAFYSNVCELAA--NSDALIICCAL  221 (331)
Q Consensus       161 g~~vgIiG~G~I----G~~~A~~l~~~--G~~V~-~~~~~~~~-------~---~~~~~~~l~ell~--~aDiV~l~~P~  221 (331)
                      -.+|||||+|.+    ++..+..++..  +++|+ +++++...       .   ....+.++++++.  +-|+|++|+|.
T Consensus        16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp~   95 (237)
T d2nvwa1          16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKV   95 (237)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCH
T ss_pred             CeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCCC
Confidence            358999999984    45555556554  56876 57776532       1   2234679999985  47799999885


Q ss_pred             Ch
Q 020073          222 TD  223 (331)
Q Consensus       222 t~  223 (331)
                      ..
T Consensus        96 ~~   97 (237)
T d2nvwa1          96 PE   97 (237)
T ss_dssp             HH
T ss_pred             cc
Confidence            43

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.10  E-value=0.079  Score=42.49  Aligned_cols=38  Identities=21%  Similarity=0.385  Sum_probs=33.0

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP  196 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~  196 (331)
                      -.|.+|.|+|.|.+|...++.++.+|. +|++.+++.++
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~k   64 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDK   64 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHH
Confidence            357899999999999999999999997 78888887643

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.08  E-value=0.019  Score=49.08  Aligned_cols=38  Identities=21%  Similarity=0.328  Sum_probs=33.9

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .|+||++.|-|. +.||+++|+.|...|++|++.+|+.+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~   41 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDE   41 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999995 67999999999999999999998653

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.07  E-value=0.034  Score=42.81  Aligned_cols=37  Identities=24%  Similarity=0.322  Sum_probs=33.5

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      .++++.|||.|.+|-++|..++..|.+|.++.+....
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV   70 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccc
Confidence            3689999999999999999999999999999887654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=94.07  E-value=0.041  Score=47.76  Aligned_cols=39  Identities=23%  Similarity=0.331  Sum_probs=35.7

Q ss_pred             ccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          157 SKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       157 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .+|+||++.|-| .|.||+++|+.|...|++|++.+|+..
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~   60 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMD   60 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            579999999999 799999999999999999999998754

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.04  E-value=0.066  Score=47.04  Aligned_cols=89  Identities=16%  Similarity=0.203  Sum_probs=53.8

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCc-cccCCHH----hhhcCCCEEEEeccCChhhhhhccH
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPY-AFYSNVC----ELAANSDALIICCALTDQTRRMINR  231 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~-~~~~~l~----ell~~aDiV~l~~P~t~~t~~li~~  231 (331)
                      +|.||++.|-| .+.||+++|+.|...|++|++.++....... .....++    ++-...-.+...+-.....+.+++ 
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~-   82 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVK-   82 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHH-
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHH-
Confidence            58999999999 5679999999999999999999887654211 1111122    222333333333333334455553 


Q ss_pred             HHHhcCCCCcEEEEcC
Q 020073          232 EVMLALGKEGIIVNVG  247 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~s  247 (331)
                      ..++...+=-+|||.+
T Consensus        83 ~~~~~~G~iDiLVnNA   98 (302)
T d1gz6a_          83 TALDTFGRIDVVVNNA   98 (302)
T ss_dssp             HHHHHTSCCCEEEECC
T ss_pred             HHHHHcCCCCEEEECC
Confidence            3444454445677653

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=94.04  E-value=0.02  Score=48.87  Aligned_cols=38  Identities=29%  Similarity=0.400  Sum_probs=33.6

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      +|+||++.|-| .+.||+++|++|...|++|+..+|+.+
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~   39 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSEN   39 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            47899999999 567999999999999999999988653

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=93.97  E-value=0.048  Score=46.16  Aligned_cols=37  Identities=24%  Similarity=0.526  Sum_probs=32.9

Q ss_pred             CCCceEEEEecCh---HHHHHHHHHhhCCCEEEEECCCCC
Q 020073          159 LGGKRVGIVGLGN---IGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       159 l~g~~vgIiG~G~---IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      |+||++.|-|.+.   ||+++|+.|...|++|+..+++.+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            8899999999764   999999999999999998888643

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.80  E-value=0.024  Score=44.98  Aligned_cols=85  Identities=15%  Similarity=0.182  Sum_probs=53.4

Q ss_pred             CceEEEEec-ChHHHHHHHHHhhCCC---EEEEECCC--CCC-C-----CccccCCHHhhhcCCCEEEEeccCChhhhhh
Q 020073          161 GKRVGIVGL-GNIGLQVAKRLQAFGC---NVLYNSRS--KKP-V-----PYAFYSNVCELAANSDALIICCALTDQTRRM  228 (331)
Q Consensus       161 g~~vgIiG~-G~IG~~~A~~l~~~G~---~V~~~~~~--~~~-~-----~~~~~~~l~ell~~aDiV~l~~P~t~~t~~l  228 (331)
                      |-+|||||. |-+|+++.+.|....+   ++.+...+  ... .     ........++...+.|++++++|.... ..+
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s-~~~   79 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTS-AKY   79 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHH-HHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccch-hhH
Confidence            458999995 9999999999976543   44444322  221 0     011123345677889999999984432 222


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCC
Q 020073          229 INREVMLALGKEGIIVNVGRGA  250 (331)
Q Consensus       229 i~~~~l~~mk~ga~lIn~srg~  250 (331)
                      .    ....+.|..+|+.|.--
T Consensus        80 ~----~~~~~~~~~VIDlSsdf   97 (154)
T d2gz1a1          80 A----PYAVKAGVVVVDNTSYF   97 (154)
T ss_dssp             H----HHHHHTTCEEEECSSTT
T ss_pred             H----hhhccccceehhcChhh
Confidence            2    12346789999987543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=93.76  E-value=0.04  Score=46.96  Aligned_cols=38  Identities=24%  Similarity=0.305  Sum_probs=33.8

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      +|+||++.|-|. +.||+++|+.|...|++|++.+++..
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA   40 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            489999999995 56999999999999999999988654

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.70  E-value=0.023  Score=46.43  Aligned_cols=60  Identities=22%  Similarity=0.111  Sum_probs=42.9

Q ss_pred             CceEEEEe-cChHHHHHHHHHhhCCCE--EEEECCCCCC-------C-----CccccCCHHhhhcCCCEEEEecc
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQAFGCN--VLYNSRSKKP-------V-----PYAFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~~~G~~--V~~~~~~~~~-------~-----~~~~~~~l~ell~~aDiV~l~~P  220 (331)
                      -+||.|.| .|.||+.+++.|...|.+  |+...|++..       .     ......++.++++.+|.|+.+..
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~   77 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTS   77 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEe
Confidence            36899999 799999999999988864  5555665432       0     11122356778999999887754

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.64  E-value=0.034  Score=48.04  Aligned_cols=84  Identities=23%  Similarity=0.324  Sum_probs=52.6

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhh-----cCCCEEEEeccCCh--hhhhhc
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELA-----ANSDALIICCALTD--QTRRMI  229 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell-----~~aDiV~l~~P~t~--~t~~li  229 (331)
                      +|+||++.|.| .+.||+++|+.|...|++|+..+|+.++     ...+.+.+     ....+....+-.+.  +.+.++
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~-----l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~   76 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSER-----LEETRQIILKSGVSEKQVNSVVADVTTEDGQDQII   76 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHH-----HHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHH-----HHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHH
Confidence            48999999999 5779999999999999999999986532     11111111     12245555554443  344555


Q ss_pred             cHHHHhcCCCCcEEEEcC
Q 020073          230 NREVMLALGKEGIIVNVG  247 (331)
Q Consensus       230 ~~~~l~~mk~ga~lIn~s  247 (331)
                      +. ..+.+.+=-++||.+
T Consensus        77 ~~-~~~~~g~iDilvnnA   93 (272)
T d1xkqa_          77 NS-TLKQFGKIDVLVNNA   93 (272)
T ss_dssp             HH-HHHHHSCCCEEEECC
T ss_pred             HH-HHHHhCCceEEEeCC
Confidence            32 333344444666654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.61  E-value=0.086  Score=42.01  Aligned_cols=37  Identities=27%  Similarity=0.453  Sum_probs=32.8

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP  196 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~  196 (331)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++++
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k   65 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK   65 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHH
Confidence            57899999999999999999999986 88888887654

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.46  E-value=0.021  Score=49.31  Aligned_cols=38  Identities=37%  Similarity=0.559  Sum_probs=34.0

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .|+||++.|.|. +.||+++|+.|...|++|+..+|+.+
T Consensus        11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~   49 (269)
T d1xu9a_          11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE   49 (269)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            499999999995 55999999999999999999998754

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=93.44  E-value=0.026  Score=49.01  Aligned_cols=38  Identities=32%  Similarity=0.420  Sum_probs=34.1

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      +|+||++.|-| .+.||+++|+.|...|++|+..+|+.+
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   40 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAE   40 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            48999999999 579999999999999999999988643

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=93.41  E-value=0.06  Score=47.52  Aligned_cols=75  Identities=16%  Similarity=0.150  Sum_probs=52.8

Q ss_pred             CceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC---------CCccc-----c---CCHHhhhcCCCEEEEeccCC
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP---------VPYAF-----Y---SNVCELAANSDALIICCALT  222 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~---------~~~~~-----~---~~l~ell~~aDiV~l~~P~t  222 (331)
                      .|||.|+| .|.||+.+++.|...|.+|++..|+...         .+...     .   ..++.++..+|.++...+..
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~~   82 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTSQ   82 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCST
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeecccc
Confidence            58999999 6999999999999999999999886553         11110     1   12566889999988877644


Q ss_pred             h-----hhhhhccHHHHh
Q 020073          223 D-----QTRRMINREVML  235 (331)
Q Consensus       223 ~-----~t~~li~~~~l~  235 (331)
                      .     .+..++++..-.
T Consensus        83 ~~~~~~~~~~~~~aa~~a  100 (350)
T d1xgka_          83 AGDEIAIGKDLADAAKRA  100 (350)
T ss_dssp             TSCHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhHHHHHHHHh
Confidence            3     244455544433

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.41  E-value=0.025  Score=48.56  Aligned_cols=38  Identities=26%  Similarity=0.282  Sum_probs=33.9

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .|+||++.|-|. +.||+++|+.|...|++|++.+|+.+
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLE   40 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            388999999995 88999999999999999999988643

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.41  E-value=0.019  Score=45.86  Aligned_cols=37  Identities=16%  Similarity=0.231  Sum_probs=31.1

Q ss_pred             CCceEEEEec-ChHHHHHHHHHhhCCC-EEEEECCCCCC
Q 020073          160 GGKRVGIVGL-GNIGLQVAKRLQAFGC-NVLYNSRSKKP  196 (331)
Q Consensus       160 ~g~~vgIiG~-G~IG~~~A~~l~~~G~-~V~~~~~~~~~  196 (331)
                      .|.+|.|+|. |.+|...++.++..|. +|++.++++++
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~   65 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEA   65 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHH
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhh
Confidence            4688999995 9999999999998885 88888876543

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=93.38  E-value=0.044  Score=46.82  Aligned_cols=84  Identities=20%  Similarity=0.263  Sum_probs=53.0

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCH-HhhhcCCCEEEEeccCCh--hhhhhccHHH
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNV-CELAANSDALIICCALTD--QTRRMINREV  233 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l-~ell~~aDiV~l~~P~t~--~t~~li~~~~  233 (331)
                      .|+||++.|-| .+.||+++|+.|...|++|++.+|+.+.     ...+ +++-....+..+.+-.+.  +...+++. .
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~-----~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~-~   76 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDV-----GEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDA-T   76 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH-----HHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHH-H
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH-----HHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHH-H
Confidence            48999999999 6779999999999999999999886432     1111 122223455555554443  34445532 2


Q ss_pred             HhcCCCCcEEEEcC
Q 020073          234 MLALGKEGIIVNVG  247 (331)
Q Consensus       234 l~~mk~ga~lIn~s  247 (331)
                      .+.+.+=-+|||.+
T Consensus        77 ~~~~G~iDiLVnnA   90 (251)
T d1zk4a1          77 EKAFGPVSTLVNNA   90 (251)
T ss_dssp             HHHHSSCCEEEECC
T ss_pred             HHHhCCceEEEecc
Confidence            33333334677765

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=93.33  E-value=0.05  Score=45.46  Aligned_cols=36  Identities=31%  Similarity=0.344  Sum_probs=32.7

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      ..++|.|||.|..|-.+|..|+..|.+|+++++.+.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            457899999999999999999999999999998654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=93.33  E-value=0.039  Score=45.70  Aligned_cols=34  Identities=38%  Similarity=0.407  Sum_probs=31.0

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      -++|.|||.|-.|-..|..|+..|.+|.++++..
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4689999999999999999999999999998753

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.32  E-value=0.046  Score=46.24  Aligned_cols=57  Identities=19%  Similarity=0.315  Sum_probs=43.0

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhc--CCCEEEEecc
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAA--NSDALIICCA  220 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~~P  220 (331)
                      ++|.|.|. |-||+.+++.|...|.+|++.+|...+  .....+++++++  ..|+|+-+.-
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D--~~d~~~~~~~l~~~~~d~vih~a~   61 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLD--ITNVLAVNKFFNEKKPNVVINCAA   61 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCC--TTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhcc--CCCHHHHHHHHHHcCCCEEEeecc
Confidence            46999996 999999999999999999999986532  222234666665  5688776653

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=93.32  E-value=0.054  Score=47.60  Aligned_cols=37  Identities=32%  Similarity=0.294  Sum_probs=33.6

Q ss_pred             CCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          159 LGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       159 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .+||+|.|.| .|-||+.+++.|...|.+|++++|...
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            3689999999 899999999999999999999998654

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.31  E-value=0.026  Score=49.69  Aligned_cols=89  Identities=21%  Similarity=0.347  Sum_probs=57.2

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhh---cCCCEEEEeccCCh--hhhhhccH
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELA---ANSDALIICCALTD--QTRRMINR  231 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell---~~aDiV~l~~P~t~--~t~~li~~  231 (331)
                      .|+||++.|-| .+.||+++|+.|...|++|++.+|+.+.... ...++.+.+   ....++.+.+-.+.  +.+.++++
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~-~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~   87 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKS-AADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS   87 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHH
Confidence            59999999999 4669999999999999999999986542100 011222211   23567777665443  45555533


Q ss_pred             HHHhcCCCCcEEEEcCC
Q 020073          232 EVMLALGKEGIIVNVGR  248 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~sr  248 (331)
                       ..+...+=-++||.+-
T Consensus        88 -~~~~~G~iDiLVnnAg  103 (297)
T d1yxma1          88 -TLDTFGKINFLVNNGG  103 (297)
T ss_dssp             -HHHHHSCCCEEEECCC
T ss_pred             -HHHHhCCeEEEEeecc
Confidence             3344555557787753

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.27  E-value=0.015  Score=49.91  Aligned_cols=86  Identities=17%  Similarity=0.219  Sum_probs=50.8

Q ss_pred             ccCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhc--CCCEEEEeccCCh--hhhhhccH
Q 020073          157 SKLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAA--NSDALIICCALTD--QTRRMINR  231 (331)
Q Consensus       157 ~~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~~P~t~--~t~~li~~  231 (331)
                      +.|.||++.|-| .+.||+++|+.|...|++|++..++...    ....+.+.+.  ..+++...+-.+.  +.+.++..
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~----~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~   77 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSK----AAEEVVAELKKLGAQGVAIQADISKPSEVVALFDK   77 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH----HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChH----HHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHH
Confidence            469999999999 4569999999999999999875443221    0111222221  2356666655443  34445532


Q ss_pred             HHHhcCCCCcEEEEcC
Q 020073          232 EVMLALGKEGIIVNVG  247 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~s  247 (331)
                       ..++...=-++||.+
T Consensus        78 -~~~~~g~idilinna   92 (259)
T d1ja9a_          78 -AVSHFGGLDFVMSNS   92 (259)
T ss_dssp             -HHHHHSCEEEEECCC
T ss_pred             -HHHHcCCCcEEEecc
Confidence             333333334566654

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.25  E-value=0.081  Score=44.56  Aligned_cols=36  Identities=28%  Similarity=0.397  Sum_probs=31.6

Q ss_pred             CceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      -|+|.|.| .|.||+.+++.|...|.+|++.+|....
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            47899999 5999999999999999999999886543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.23  E-value=0.12  Score=40.80  Aligned_cols=36  Identities=25%  Similarity=0.424  Sum_probs=30.7

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~  195 (331)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.+++++
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~   64 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKD   64 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHH
Confidence            47899999999999999999999997 5667776554

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.23  E-value=0.065  Score=46.01  Aligned_cols=38  Identities=29%  Similarity=0.418  Sum_probs=33.7

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .|+||++.|.| .+.||+++|+.|...|++|+..+|+.+
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~   41 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADD   41 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            48999999999 567999999999999999999988643

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.22  E-value=0.022  Score=48.50  Aligned_cols=36  Identities=33%  Similarity=0.448  Sum_probs=32.4

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCC-EEEEECCC
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRS  193 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~  193 (331)
                      .|++++|.|||+|.+|..+|..|...|. +++.+|..
T Consensus        27 kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          27 ALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            5899999999999999999999999999 78887743

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=93.18  E-value=0.037  Score=47.13  Aligned_cols=38  Identities=24%  Similarity=0.447  Sum_probs=33.0

Q ss_pred             cCCCceEEEEec-Ch--HHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVGL-GN--IGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~--IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .|+||++.|.|. |.  ||+++|+.|...|++|+..+++..
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~   43 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL   43 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChH
Confidence            389999999995 54  999999999999999998877643

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.11  E-value=0.077  Score=46.96  Aligned_cols=60  Identities=20%  Similarity=0.294  Sum_probs=44.1

Q ss_pred             CCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC-C----C---c-----cccCCHHhhhcCCCEEEEec
Q 020073          160 GGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP-V----P---Y-----AFYSNVCELAANSDALIICC  219 (331)
Q Consensus       160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~----~---~-----~~~~~l~ell~~aDiV~l~~  219 (331)
                      .+++|.|.| .|-||+.+++.|...|.+|+++++.... .    .   .     .....+.++++..|.|+-+.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            578899999 8999999999999999999999765433 0    0   0     01123455677899877655

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.07  E-value=0.032  Score=47.91  Aligned_cols=38  Identities=29%  Similarity=0.435  Sum_probs=33.7

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      +|.||++.|-|. +.||+++|+.|...|++|++.+|+.+
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   43 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQK   43 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            589999999996 56999999999999999999988643

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=93.04  E-value=0.16  Score=43.25  Aligned_cols=87  Identities=14%  Similarity=0.185  Sum_probs=55.0

Q ss_pred             cCCCceEEEEecC-hHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCC-h--hhhhhccHHH
Q 020073          158 KLGGKRVGIVGLG-NIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALT-D--QTRRMINREV  233 (331)
Q Consensus       158 ~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t-~--~t~~li~~~~  233 (331)
                      +|+||++.|-|.+ .||.++|+.|...|++|++..|+.+..  .....+.+......+.+..+-.+ +  +.+.++++ .
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~   78 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP--TALAELKAINPKVNITFHTYDVTVPVAESKKLLKK-I   78 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH--HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHH-H
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccH--HHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHH-H
Confidence            5899999999955 699999999999999988776654431  11123344445556666666554 2  34555533 2


Q ss_pred             HhcCCCCcEEEEcC
Q 020073          234 MLALGKEGIIVNVG  247 (331)
Q Consensus       234 l~~mk~ga~lIn~s  247 (331)
                      .+...+=-+|||.+
T Consensus        79 ~~~~g~iDilvnnA   92 (254)
T d1sbya1          79 FDQLKTVDILINGA   92 (254)
T ss_dssp             HHHHSCCCEEEECC
T ss_pred             HHHcCCCCEEEeCC
Confidence            23333333677765

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.01  E-value=0.025  Score=48.65  Aligned_cols=88  Identities=17%  Similarity=0.218  Sum_probs=52.6

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhh-hcCCCEEEEeccCCh--hhhhhccHHH
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCEL-AANSDALIICCALTD--QTRRMINREV  233 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~el-l~~aDiV~l~~P~t~--~t~~li~~~~  233 (331)
                      .|+||++.|-| .+.||+++|+.|...|++|+..+|+.+.... ....+.+. ....++....+-.+.  +.+.+++ +.
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~-~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~-~~   79 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEE-TRQQILAAGVSEQNVNSVVADVTTDAGQDEILS-TT   79 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHH-HH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHhcCCCcCceEEEEccCCCHHHHHHHHH-HH
Confidence            48899999999 5899999999999999999999886532100 00111111 122345555554432  3444443 23


Q ss_pred             HhcCCCCcEEEEcC
Q 020073          234 MLALGKEGIIVNVG  247 (331)
Q Consensus       234 l~~mk~ga~lIn~s  247 (331)
                      .++..+=-++||.+
T Consensus        80 ~~~~g~iDilvnnA   93 (264)
T d1spxa_          80 LGKFGKLDILVNNA   93 (264)
T ss_dssp             HHHHSCCCEEEECC
T ss_pred             HHHhCCCCEeeccc
Confidence            33344445667664

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.94  E-value=0.021  Score=49.10  Aligned_cols=38  Identities=26%  Similarity=0.404  Sum_probs=33.7

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .|+||++.|-|. +.||+++|+.|...|++|+..+|+.+
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   46 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINAD   46 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999995 67999999999999999999988643

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.87  E-value=0.041  Score=46.98  Aligned_cols=36  Identities=36%  Similarity=0.372  Sum_probs=32.3

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .-|+|.|||.|..|-..|..|+..|++|+++++...
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~   64 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER   64 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            447999999999999999999999999999987643

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=92.85  E-value=0.11  Score=44.48  Aligned_cols=80  Identities=18%  Similarity=0.159  Sum_probs=52.2

Q ss_pred             CCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCC
Q 020073          159 LGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALG  238 (331)
Q Consensus       159 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk  238 (331)
                      ..|++|++||+-    ...+.++..|+++.+++++++. +......-++++++||+|++.-  +.=..+-+ ...|++.|
T Consensus       120 ~~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~-gd~p~~~~~~lLp~aD~viiTG--sTlvN~Tl-~~LL~~~~  191 (251)
T d2h1qa1         120 VKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEE-GDYPLPASEFILPECDYVYITC--ASVVDKTL-PRLLELSR  191 (251)
T ss_dssp             TTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCT-TCEEGGGHHHHGGGCSEEEEET--HHHHHTCH-HHHHHHTT
T ss_pred             cCCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCC-CCCCchHHHHhhhcCCEEEEEe--chhhcCCH-HHHHHhCC
Confidence            579999999875    4566677778999999998764 2222334677899999988863  11111111 44666677


Q ss_pred             CCcEEEEc
Q 020073          239 KEGIIVNV  246 (331)
Q Consensus       239 ~ga~lIn~  246 (331)
                      +.+.+|=+
T Consensus       192 ~a~~vvl~  199 (251)
T d2h1qa1         192 NARRITLV  199 (251)
T ss_dssp             TSSEEEEE
T ss_pred             cCCEEEEE
Confidence            77655433

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=92.84  E-value=0.074  Score=47.28  Aligned_cols=32  Identities=31%  Similarity=0.211  Sum_probs=28.2

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCC
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRS  193 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~  193 (331)
                      |.+.|.| .|-||+.+++.|...|.+|++.+|.
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~   34 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRR   34 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC-
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            5666888 8999999999999999999999984

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=92.77  E-value=0.049  Score=48.12  Aligned_cols=62  Identities=18%  Similarity=0.132  Sum_probs=46.2

Q ss_pred             CCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC-------------C--------CccccCCHHhhhcCCCEEE
Q 020073          159 LGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP-------------V--------PYAFYSNVCELAANSDALI  216 (331)
Q Consensus       159 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~-------------~--------~~~~~~~l~ell~~aDiV~  216 (331)
                      ..||+|.|.| .|-||+.+++.|...|.+|++..|+..+             .        +.....++++++..+|+|+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~   88 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence            4599999999 7889999999999999999987664321             0        0112245678899999887


Q ss_pred             Eecc
Q 020073          217 ICCA  220 (331)
Q Consensus       217 l~~P  220 (331)
                      .+.-
T Consensus        89 ~~a~   92 (342)
T d1y1pa1          89 HIAS   92 (342)
T ss_dssp             ECCC
T ss_pred             hhcc
Confidence            6553

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=92.70  E-value=0.088  Score=42.67  Aligned_cols=90  Identities=9%  Similarity=0.017  Sum_probs=61.8

Q ss_pred             cCCCceEEEEecC--hHHHHHHHHHhhCCCEEEEECCCCCC---------------CC--ccccCCHHhhhcCCCEEEEe
Q 020073          158 KLGGKRVGIVGLG--NIGLQVAKRLQAFGCNVLYNSRSKKP---------------VP--YAFYSNVCELAANSDALIIC  218 (331)
Q Consensus       158 ~l~g~~vgIiG~G--~IG~~~A~~l~~~G~~V~~~~~~~~~---------------~~--~~~~~~l~ell~~aDiV~l~  218 (331)
                      .+.|.+|++||=|  ++..+++..+..||+++.++.+..-.               .+  .....+++++++.+|+|..-
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~   81 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD   81 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence            4788999999954  79999999999999999988774321               01  12357899999999998875


Q ss_pred             ccCC----h---h-------hhhhccHHHHhcCCCCcEEEEcC
Q 020073          219 CALT----D---Q-------TRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       219 ~P~t----~---~-------t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      .=..    .   .       ....++.......++.++|.-+.
T Consensus        82 ~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L  124 (183)
T d1duvg2          82 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  124 (183)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             ehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence            4211    0   0       11223444445577888887764

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=92.55  E-value=0.047  Score=47.19  Aligned_cols=36  Identities=39%  Similarity=0.541  Sum_probs=32.4

Q ss_pred             cCCCceEEEEecC---hHHHHHHHHHhhCCCEEEEECCC
Q 020073          158 KLGGKRVGIVGLG---NIGLQVAKRLQAFGCNVLYNSRS  193 (331)
Q Consensus       158 ~l~g~~vgIiG~G---~IG~~~A~~l~~~G~~V~~~~~~  193 (331)
                      +|+||++.|-|.+   .||+++|+.|...|++|++.+++
T Consensus         5 ~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            6999999999986   59999999999999999887653

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=92.51  E-value=0.033  Score=44.97  Aligned_cols=84  Identities=20%  Similarity=0.234  Sum_probs=57.6

Q ss_pred             CCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC------CCcc-----ccCC-HHhhh-----cCCCEEEEeccC
Q 020073          160 GGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP------VPYA-----FYSN-VCELA-----ANSDALIICCAL  221 (331)
Q Consensus       160 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~------~~~~-----~~~~-l~ell-----~~aDiV~l~~P~  221 (331)
                      .|.+|.|.|. |.+|+..++.++..|++|++..+++++      .+..     ...+ .++++     ...|+|+-++. 
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG-  107 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG-  107 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-
Confidence            5889999997 779999999999999999998876543      1111     0111 22222     34888888764 


Q ss_pred             ChhhhhhccHHHHhcCCCCcEEEEcCCC
Q 020073          222 TDQTRRMINREVMLALGKEGIIVNVGRG  249 (331)
Q Consensus       222 t~~t~~li~~~~l~~mk~ga~lIn~srg  249 (331)
                       .++    -.+.++.++++..++.++..
T Consensus       108 -~~~----~~~~~~~l~~~G~~v~~G~~  130 (182)
T d1v3va2         108 -GEF----LNTVLSQMKDFGKIAICGAI  130 (182)
T ss_dssp             -HHH----HHHHGGGEEEEEEEEECCCG
T ss_pred             -chh----hhhhhhhccCCCeEEeecce
Confidence             222    14567788999998888643

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.51  E-value=0.041  Score=46.97  Aligned_cols=38  Identities=29%  Similarity=0.255  Sum_probs=33.6

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .|.||++.|.|. +.||+++|+.|...|++|+.++|+.+
T Consensus         7 ~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~   45 (251)
T d2c07a1           7 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQK   45 (251)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            478999999995 68999999999999999999988643

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.51  E-value=0.073  Score=44.41  Aligned_cols=38  Identities=29%  Similarity=0.329  Sum_probs=34.4

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .-.+++|.|||.|..|-..|..|+..|++|+++++...
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            35789999999999999999999999999999987654

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.50  E-value=0.05  Score=41.58  Aligned_cols=59  Identities=10%  Similarity=0.045  Sum_probs=38.7

Q ss_pred             eEEEEecChHHHHHHHHHh-hCCCEEEE-ECCCCCC-----CCcc--ccCCHHhhhc-CCCEEEEeccC
Q 020073          163 RVGIVGLGNIGLQVAKRLQ-AFGCNVLY-NSRSKKP-----VPYA--FYSNVCELAA-NSDALIICCAL  221 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~-~~G~~V~~-~~~~~~~-----~~~~--~~~~l~ell~-~aDiV~l~~P~  221 (331)
                      ++.|+|+|.+|+++++.+. .-|+++++ +|..+..     .+..  ....+.++.+ ..++.++++|.
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~~~i~iai~~i~~   73 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPR   73 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCH
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHhhcccEEEEeCCH
Confidence            7999999999999998764 45778765 5555443     2221  2345555443 46777777763

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.16  E-value=0.069  Score=46.99  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=32.6

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      ++|+|.|||.|..|-.+|..|+..|.+|+++..+..
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            368999999999999999999999999999987654

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=92.15  E-value=0.1  Score=42.24  Aligned_cols=82  Identities=15%  Similarity=0.218  Sum_probs=52.4

Q ss_pred             CCceEEEE--ecChHHHHHHHHHhhCCCEEEEECCCCCC----------CCccc--------cCC----HHhhh----cC
Q 020073          160 GGKRVGIV--GLGNIGLQVAKRLQAFGCNVLYNSRSKKP----------VPYAF--------YSN----VCELA----AN  211 (331)
Q Consensus       160 ~g~~vgIi--G~G~IG~~~A~~l~~~G~~V~~~~~~~~~----------~~~~~--------~~~----l~ell----~~  211 (331)
                      .|.++.|+  |.|.+|+...+.++.+|++|+...++.+.          .+...        ..+    +.++.    ..
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~  107 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE  107 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence            47889998  67999999999999999999887655432          01100        011    11211    23


Q ss_pred             CCEEEEeccCChhhhhhccHHHHhcCCCCcEEEEcC
Q 020073          212 SDALIICCALTDQTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       212 aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                      .|+|+-++. .+.+     ...+..|+++..+|.++
T Consensus       108 vdvv~D~vg-~~~~-----~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         108 AKLALNCVG-GKSS-----TGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             EEEEEESSC-HHHH-----HHHHHTSCTTCEEEECC
T ss_pred             ceEEEECCC-cchh-----hhhhhhhcCCcEEEEEC
Confidence            677777653 2221     34567788888888775

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.14  E-value=0.056  Score=46.13  Aligned_cols=88  Identities=24%  Similarity=0.283  Sum_probs=51.2

Q ss_pred             CCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCCh--hhhhhccHHHHh
Q 020073          159 LGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTD--QTRRMINREVML  235 (331)
Q Consensus       159 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~--~t~~li~~~~l~  235 (331)
                      +.||++.|-|. +.||+++|+.|...|++|+..+|+.++... ....+.+......+..+.+-.+.  +.+.+++ ...+
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~-~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~-~~~~   78 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQ-CKAALHEQFEPQKTLFIQCDVADQQQLRDTFR-KVVD   78 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHTTTSCGGGEEEEECCTTSHHHHHHHHH-HHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHHhcCCCcEEEEEeecCCHHHHHHHHH-HHHH
Confidence            36899999995 669999999999999999999887542000 01112222223345555554433  3344442 2223


Q ss_pred             cCCCCcEEEEcCC
Q 020073          236 ALGKEGIIVNVGR  248 (331)
Q Consensus       236 ~mk~ga~lIn~sr  248 (331)
                      .+.+=-++||.+-
T Consensus        79 ~~G~iDilVnnAg   91 (254)
T d2gdza1          79 HFGRLDILVNNAG   91 (254)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HcCCcCeeccccc
Confidence            3333346676653

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.92  E-value=0.059  Score=45.58  Aligned_cols=63  Identities=24%  Similarity=0.279  Sum_probs=46.1

Q ss_pred             cCCCceEEEEecC-hHHHHHHHHHhhCCCEEEEECCCCCC-C-------Cccc-------cCCHHhhhcCCCEEEEecc
Q 020073          158 KLGGKRVGIVGLG-NIGLQVAKRLQAFGCNVLYNSRSKKP-V-------PYAF-------YSNVCELAANSDALIICCA  220 (331)
Q Consensus       158 ~l~g~~vgIiG~G-~IG~~~A~~l~~~G~~V~~~~~~~~~-~-------~~~~-------~~~l~ell~~aDiV~l~~P  220 (331)
                      .|.||++.|-|.+ .||+++|+.|...|++|+..+|+.+. .       +...       .....+-+..-|+++.+.-
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG   82 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAG   82 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceEEEEecCCHHHHHHHHHHHHHhcCCceEEEeeec
Confidence            4899999999965 69999999999999999999987665 1       1111       1122333456899998753

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.73  E-value=0.074  Score=45.40  Aligned_cols=37  Identities=30%  Similarity=0.485  Sum_probs=33.2

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      .|+||++.|-| .+.||+++|+.|...|++|+..+++.
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~   40 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48999999999 55799999999999999999999864

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.59  E-value=0.093  Score=44.06  Aligned_cols=61  Identities=21%  Similarity=0.250  Sum_probs=45.0

Q ss_pred             CCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC---CCcc-----ccCC---HHhhhcCCCEEEEec
Q 020073          159 LGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP---VPYA-----FYSN---VCELAANSDALIICC  219 (331)
Q Consensus       159 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~---~~~~-----~~~~---l~ell~~aDiV~l~~  219 (331)
                      |+||++.|-|. +.||+++|+.|...|++|++.+|+.+.   .+..     ....   +.+-+.+-|+++.+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnA   74 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNA   74 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEEEcchHHHHHHHHHHhCCCcEEEecc
Confidence            78999999995 679999999999999999999987543   1111     0122   334456789888775

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.47  E-value=0.08  Score=44.89  Aligned_cols=38  Identities=21%  Similarity=0.294  Sum_probs=34.1

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .|+||++.|.| .+.||+++|+.|...|++|+..+|+.+
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~   41 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINES   41 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            38999999988 689999999999999999999998754

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=91.34  E-value=0.08  Score=44.00  Aligned_cols=34  Identities=32%  Similarity=0.452  Sum_probs=30.7

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      ++|.|||.|..|-..|..|+..|++|+++.++..
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~   34 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            3699999999999999999999999999987643

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.25  E-value=0.11  Score=45.12  Aligned_cols=57  Identities=23%  Similarity=0.151  Sum_probs=40.3

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC----C----Cc-----cccCCHHhhhcCCCEEEEe
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP----V----PY-----AFYSNVCELAANSDALIIC  218 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~----~----~~-----~~~~~l~ell~~aDiV~l~  218 (331)
                      |+|.|.| .|-||+.+++.|...|.+|+++++....    .    ..     .....++.+..++|+|+-+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~Vihl   72 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHL   72 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEEC
Confidence            6899999 7999999999999999999998763221    0    10     1112345566789987644

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.24  E-value=0.066  Score=42.23  Aligned_cols=58  Identities=14%  Similarity=0.031  Sum_probs=41.0

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhC---CC----EEEEECCCCCC------------C------CccccCCHHhhhcCCCEE
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAF---GC----NVLYNSRSKKP------------V------PYAFYSNVCELAANSDAL  215 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~---G~----~V~~~~~~~~~------------~------~~~~~~~l~ell~~aDiV  215 (331)
                      .+|.||| .|.+|+.+|-.|..-   |.    .+..+|.....            .      ......+..+.+++||+|
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvV   83 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA   83 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEE
Confidence            3899999 599999999988642   32    45667765432            0      011235678899999999


Q ss_pred             EEec
Q 020073          216 IICC  219 (331)
Q Consensus       216 ~l~~  219 (331)
                      +++.
T Consensus        84 Vita   87 (154)
T d5mdha1          84 ILVG   87 (154)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9987

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=91.17  E-value=0.11  Score=44.18  Aligned_cols=39  Identities=23%  Similarity=0.255  Sum_probs=34.8

Q ss_pred             cCCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          158 KLGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       158 ~l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      .|+||++.|-| .+.||+++|+.|...|++|++.+++.+.
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~   41 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG   41 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            38899999999 7889999999999999999999987643

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.00  E-value=0.12  Score=42.04  Aligned_cols=61  Identities=23%  Similarity=0.287  Sum_probs=40.7

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhCCC--EEEEECCCCCC-CC-cc-ccCCH----HhhhcCCCEEEEeccCC
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAFGC--NVLYNSRSKKP-VP-YA-FYSNV----CELAANSDALIICCALT  222 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~~~~~~~-~~-~~-~~~~l----~ell~~aDiV~l~~P~t  222 (331)
                      |+|.|.|. |-||+.+++.|...|.  +|+...|++.. .. .. ...++    +.+....|.|+.|+-.+
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhcccccccccchhhhhhccccchheeeeeeeee
Confidence            78999996 9999999999998887  66666665433 11 10 11233    33445579999886433

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.00  E-value=0.067  Score=45.61  Aligned_cols=34  Identities=29%  Similarity=0.344  Sum_probs=27.6

Q ss_pred             ceEE-EEe-cChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          162 KRVG-IVG-LGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       162 ~~vg-IiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      |+|. |-| .+.||+++|+.|...|++|++.+|+.+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~   36 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDA   36 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4554 456 456999999999999999999998653

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.00  E-value=0.14  Score=41.19  Aligned_cols=38  Identities=18%  Similarity=0.163  Sum_probs=33.7

Q ss_pred             CCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          159 LGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       159 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      ..|.+|.|.| .|.+|....+.++.+|++|+...+++++
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k   68 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAE   68 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTC
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHH
Confidence            4588999999 6999999999999999999998877654

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=90.93  E-value=0.14  Score=41.38  Aligned_cols=97  Identities=14%  Similarity=0.158  Sum_probs=60.1

Q ss_pred             CceEEEEec-ChHHHHHHHHHhh---CCC----EEEEECCCCCC------------C------CccccCCHHhhhcCCCE
Q 020073          161 GKRVGIVGL-GNIGLQVAKRLQA---FGC----NVLYNSRSKKP------------V------PYAFYSNVCELAANSDA  214 (331)
Q Consensus       161 g~~vgIiG~-G~IG~~~A~~l~~---~G~----~V~~~~~~~~~------------~------~~~~~~~l~ell~~aDi  214 (331)
                      -.+|.|+|. |.||+.++-+|..   ||.    .+..+|.....            .      ......+..+.++.+|+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv  103 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW  103 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence            358999996 9999999998874   554    45566654421            0      11224678899999999


Q ss_pred             EEEeccC--Ch---------hhhhhcc--HHHHhc-CCCCcEEEEcCCCCccCHHHHHH
Q 020073          215 LIICCAL--TD---------QTRRMIN--REVMLA-LGKEGIIVNVGRGAVIDENEMVR  259 (331)
Q Consensus       215 V~l~~P~--t~---------~t~~li~--~~~l~~-mk~ga~lIn~srg~~vd~~al~~  259 (331)
                      |++..-.  .+         .+..++.  .+.+.+ .++.++++=++.  .+|..+++.
T Consensus       104 Vvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N--Pvd~~t~ia  160 (175)
T d7mdha1         104 ALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTNALIC  160 (175)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHHHH
T ss_pred             EEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC--cHHHHHHHH
Confidence            9998722  22         1112220  122333 355776666653  588777653

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.83  E-value=0.084  Score=45.18  Aligned_cols=38  Identities=24%  Similarity=0.360  Sum_probs=33.9

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .|+||++.|-|. +.||+++|+.|...|++|+.++|+.+
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~   43 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEY   43 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999994 56999999999999999999998754

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=90.82  E-value=0.088  Score=44.94  Aligned_cols=36  Identities=33%  Similarity=0.503  Sum_probs=32.0

Q ss_pred             CCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          159 LGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       159 l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      |+||++.|-|. +.||+++|+.|...|++|++.+|+.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            78999998885 5599999999999999999998874

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=90.54  E-value=0.26  Score=42.94  Aligned_cols=32  Identities=28%  Similarity=0.344  Sum_probs=28.4

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCC
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRS  193 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~  193 (331)
                      ++|.|.| .|-||+.+++.|...|.+|+++++.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            3588898 7999999999999999999998763

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=90.52  E-value=0.093  Score=41.36  Aligned_cols=30  Identities=37%  Similarity=0.373  Sum_probs=26.4

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEE
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLY  189 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~  189 (331)
                      ++++|.|||.|.+|-++|..|+.+|.++.+
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v   31 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNI   31 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEE
Confidence            478999999999999999999999986543

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.29  E-value=0.06  Score=42.50  Aligned_cols=58  Identities=16%  Similarity=0.115  Sum_probs=38.8

Q ss_pred             ceEEEEec-ChHHHHHHHHHhhCCC-------EEEEECCCCCC------------C------CccccCCHHhhhcCCCEE
Q 020073          162 KRVGIVGL-GNIGLQVAKRLQAFGC-------NVLYNSRSKKP------------V------PYAFYSNVCELAANSDAL  215 (331)
Q Consensus       162 ~~vgIiG~-G~IG~~~A~~l~~~G~-------~V~~~~~~~~~------------~------~~~~~~~l~ell~~aDiV  215 (331)
                      .+|.|+|. |.+|+.+|-.|...+.       .+..++.....            .      ......+..+.+++||+|
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~advV   84 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYA   84 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccEE
Confidence            48999996 9999999999975332       12233322111            0      111235678899999999


Q ss_pred             EEec
Q 020073          216 IICC  219 (331)
Q Consensus       216 ~l~~  219 (331)
                      +++.
T Consensus        85 iita   88 (154)
T d1y7ta1          85 LLVG   88 (154)
T ss_dssp             EECC
T ss_pred             Eeec
Confidence            9987

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=90.20  E-value=0.094  Score=42.17  Aligned_cols=99  Identities=22%  Similarity=0.245  Sum_probs=55.5

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCCC--CCc-cccCC----H-HhhhcCCCEEEEeccCChhhhhhccH---
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKKP--VPY-AFYSN----V-CELAANSDALIICCALTDQTRRMINR---  231 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~~--~~~-~~~~~----l-~ell~~aDiV~l~~P~t~~t~~li~~---  231 (331)
                      +|||=|||+||+.+.|.+..-+.+|.+.+.....  ..+ ..++|    + .++-...|.+++    +.....+...   
T Consensus         2 kigINGfGRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i----~g~~I~~~~~~~p   77 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYV----DGKAIRATAVKDP   77 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEE----TTEEEEEECCSSG
T ss_pred             EEEEECCcHHHHHHHHHHhcCCCEEEEECCCcchhhhhheeecccccCccccccccccceeEe----cceeEEEEecCCh
Confidence            7999999999999999988778888877654322  000 00011    1 112233454444    1122222322   


Q ss_pred             HHHhcCCCCcEEEEcCCCCccCHHHHHHHHHhCC
Q 020073          232 EVMLALGKEGIIVNVGRGAVIDENEMVRCLVRGE  265 (331)
Q Consensus       232 ~~l~~mk~ga~lIn~srg~~vd~~al~~aL~~~~  265 (331)
                      +.+..-+-|.-+|==+.|.-.+.+.+..-|+.|-
T Consensus        78 ~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~ga  111 (168)
T d2g82a1          78 KEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGA  111 (168)
T ss_dssp             GGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTTC
T ss_pred             HHCcccccCCceeEeccccccchHHhhhhhcccc
Confidence            2222223344333335788888888888888764

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.03  E-value=0.11  Score=44.79  Aligned_cols=38  Identities=29%  Similarity=0.394  Sum_probs=33.6

Q ss_pred             cCCCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      +|+||++.|-|. +.||+++|+.|...|++|++.+|+.+
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   39 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNED   39 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            378999999994 67999999999999999999998753

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=90.00  E-value=0.093  Score=42.28  Aligned_cols=30  Identities=30%  Similarity=0.543  Sum_probs=26.4

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSR  192 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~  192 (331)
                      +|||=|||+||+.+.|.+...+.+|++.+.
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd   31 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVND   31 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEECC
Confidence            699999999999999999877888877654

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=90.00  E-value=0.5  Score=38.56  Aligned_cols=91  Identities=9%  Similarity=0.060  Sum_probs=63.3

Q ss_pred             HHHHHHhhCCCEEEEECCCCCC----------CCccccCCHHhhhcCCCEEEEeccCChhhhhhccHHHHhcCCCCcEEE
Q 020073          175 QVAKRLQAFGCNVLYNSRSKKP----------VPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIV  244 (331)
Q Consensus       175 ~~A~~l~~~G~~V~~~~~~~~~----------~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ga~lI  244 (331)
                      ..++.|...|++|.+=.-....          .+.....+.+++. ++|+|+..-|.++        +.+++||+|.++|
T Consensus        21 ~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~~--------~e~~~lk~~~~li   91 (193)
T d1pjca2          21 SSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPLP--------AEYDLMQKDQLLF   91 (193)
T ss_dssp             HHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCCG--------GGGGGCCTTCEEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCCH--------HHHHhhhcCceEE
Confidence            5678888899999875433222          1222344566666 5898876544443        3577899999999


Q ss_pred             EcCCCCccCHHHHHHHHHhCCceEEEeecCCC
Q 020073          245 NVGRGAVIDENEMVRCLVRGEIAGAGLDVFEN  276 (331)
Q Consensus       245 n~srg~~vd~~al~~aL~~~~i~ga~lDV~~~  276 (331)
                      ..-..  ....+++++|.+.+|...++|....
T Consensus        92 ~~l~p--~~~~ell~~l~~~~it~~s~E~ipr  121 (193)
T d1pjca2          92 TYLHL--AAARELTEQLMRVGLTAIAYETVEL  121 (193)
T ss_dssp             ECCCG--GGCHHHHHHHHHHTCEEEEGGGCCC
T ss_pred             EecCc--ccchHHHHHHHHcCCEEEEeeeccc
Confidence            77543  4456899999999999999987544

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=89.98  E-value=0.15  Score=37.82  Aligned_cols=36  Identities=31%  Similarity=0.239  Sum_probs=29.4

Q ss_pred             CceEEEEecChHHHHHHHHHhh---CCCEEEEECCCCCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQA---FGCNVLYNSRSKKP  196 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~---~G~~V~~~~~~~~~  196 (331)
                      .+++.|||.|.+|-++|..+..   .|.+|..+.+.+.-
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i   56 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccccc
Confidence            3789999999999999987654   48899888776543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.97  E-value=0.73  Score=36.01  Aligned_cols=37  Identities=19%  Similarity=0.386  Sum_probs=31.8

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP  196 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~  196 (331)
                      .|.+|.|+|.|.+|...+..++..|. +|++.++++++
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~r   65 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDK   65 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHH
Confidence            57899999999999999999998887 68888877543

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.93  E-value=0.17  Score=42.37  Aligned_cols=35  Identities=34%  Similarity=0.525  Sum_probs=31.4

Q ss_pred             CceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .++|.|||.|.-|-..|..|+..|.+|+++..+..
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r   39 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR   39 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            45799999999999999999999999999987554

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.87  E-value=0.17  Score=42.36  Aligned_cols=37  Identities=19%  Similarity=0.195  Sum_probs=31.9

Q ss_pred             CCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          160 GGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       160 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      .||++.|.|. |.||+++|+.|...|++|...++....
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~   38 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE   38 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            4899999995 779999999999999999988776543

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=89.85  E-value=0.14  Score=41.23  Aligned_cols=33  Identities=36%  Similarity=0.526  Sum_probs=29.5

Q ss_pred             eEEEEecChHHHHHHHHHhhCCC-EEEEECCCCC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKK  195 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~  195 (331)
                      +|.|||.|..|-..|..|+..|. +|+++.++..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~   35 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDH   35 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCC
Confidence            58999999999999999999997 6999987653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.81  E-value=0.17  Score=41.22  Aligned_cols=36  Identities=25%  Similarity=0.406  Sum_probs=31.6

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCC-EEEEECCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~  195 (331)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++++.
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~   61 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA   61 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccch
Confidence            47899999999999999999999998 7888887654

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.52  E-value=0.18  Score=41.36  Aligned_cols=35  Identities=23%  Similarity=0.316  Sum_probs=29.8

Q ss_pred             ceEEEEecChHHHHHHHHHh--hCCCEEEEECCCCCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQ--AFGCNVLYNSRSKKP  196 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~--~~G~~V~~~~~~~~~  196 (331)
                      .+|+|||.|.-|-..|+.|+  .+|++|+++++.+..
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            37999999999999999885  468899999887643

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.34  E-value=0.4  Score=38.03  Aligned_cols=21  Identities=29%  Similarity=0.502  Sum_probs=18.8

Q ss_pred             ceEEEEecChHHHHHHHHHhh
Q 020073          162 KRVGIVGLGNIGLQVAKRLQA  182 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~  182 (331)
                      -+|+|+|+|.+|+.+++.+..
T Consensus         5 i~I~l~G~G~VG~~l~~~l~~   25 (168)
T d1ebfa1           5 VNVAVIGAGVVGSAFLDQLLA   25 (168)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH
T ss_pred             EEEEEEeCCHHHHHHHHHHHH
Confidence            369999999999999999875

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.09  E-value=0.25  Score=38.22  Aligned_cols=37  Identities=27%  Similarity=0.188  Sum_probs=31.6

Q ss_pred             CCCceEEEE--ecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          159 LGGKRVGIV--GLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       159 l~g~~vgIi--G~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .-++.+.|+  |.|.||-++|..|+.+|.+|.++.+.+.
T Consensus        37 ~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          37 KIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             CCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             ccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            446677777  8899999999999999999999987654

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=89.07  E-value=0.59  Score=40.86  Aligned_cols=88  Identities=14%  Similarity=0.231  Sum_probs=57.8

Q ss_pred             cCCCceEEEEec---ChHHHHHHHHHhhCC-CEEEEECCCCCC-------------CCccccCCHHhhhcCCCEEEEecc
Q 020073          158 KLGGKRVGIVGL---GNIGLQVAKRLQAFG-CNVLYNSRSKKP-------------VPYAFYSNVCELAANSDALIICCA  220 (331)
Q Consensus       158 ~l~g~~vgIiG~---G~IG~~~A~~l~~~G-~~V~~~~~~~~~-------------~~~~~~~~l~ell~~aDiV~l~~P  220 (331)
                      .+.|++|+++|-   +++..+.+..+..+| +++.++.+..-.             .......+++++++++|+|...--
T Consensus       151 ~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~  230 (310)
T d1tuga1         151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV  230 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEECCC
T ss_pred             CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeeeccc
Confidence            378999999996   788999999999885 688877653211             112335789999999998875321


Q ss_pred             CChh----------hhhhccHHHHhcCCCCcEEEE
Q 020073          221 LTDQ----------TRRMINREVMLALGKEGIIVN  245 (331)
Q Consensus       221 ~t~~----------t~~li~~~~l~~mk~ga~lIn  245 (331)
                      ....          ....++.+.++.++++++|.-
T Consensus       231 ~~e~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MH  265 (310)
T d1tuga1         231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLH  265 (310)
T ss_dssp             CGGGSCHHHHHTTTTSSCBCGGGGTTSCSSCEEEC
T ss_pred             chhhhcccchhhhhhhhhhhHHHHhcCCCCcEEee
Confidence            1110          012245556666666666653

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.97  E-value=0.094  Score=45.00  Aligned_cols=36  Identities=31%  Similarity=0.533  Sum_probs=31.0

Q ss_pred             CCceEEEE--ecChHHHHHHHHHhh-CCCEEEEECCCCC
Q 020073          160 GGKRVGIV--GLGNIGLQVAKRLQA-FGCNVLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIi--G~G~IG~~~A~~l~~-~G~~V~~~~~~~~  195 (331)
                      +||+|+||  |.+.||.++|+.|.. .|.+|+.++|+.+
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~   39 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVT   39 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            48999988  789999999999876 4899999998754

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.79  E-value=0.33  Score=40.30  Aligned_cols=61  Identities=21%  Similarity=0.236  Sum_probs=44.9

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhh--------------------CCC-EEEEECCCCCC-CCccccCCHHhhhcCCCE
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQA--------------------FGC-NVLYNSRSKKP-VPYAFYSNVCELAANSDA  214 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~--------------------~G~-~V~~~~~~~~~-~~~~~~~~l~ell~~aDi  214 (331)
                      .++.|++|.|||-|+++.-+|+.|..                    .|. +|+.+.|.... ..+ ....+.|+....++
T Consensus        35 ~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~~~f-t~~Elre~~~~~~~  113 (225)
T d1cjca1          35 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAF-TIKELREMIQLPGT  113 (225)
T ss_dssp             CCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCC-CHHHHHHHHTCTTE
T ss_pred             ccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHhCCC-CchhhhcccccCCC
Confidence            46789999999999999999998876                    466 68877776543 222 22357778877887


Q ss_pred             EEEe
Q 020073          215 LIIC  218 (331)
Q Consensus       215 V~l~  218 (331)
                      -+..
T Consensus       114 ~~~~  117 (225)
T d1cjca1         114 RPML  117 (225)
T ss_dssp             EEEC
T ss_pred             ccee
Confidence            6654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.76  E-value=0.19  Score=40.11  Aligned_cols=32  Identities=22%  Similarity=0.200  Sum_probs=29.8

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          164 VGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       164 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      |.|||.|..|...|..|+..|.+|+++.++..
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~~   39 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQDH   39 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            89999999999999999999999999998754

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.71  E-value=0.22  Score=43.55  Aligned_cols=34  Identities=32%  Similarity=0.344  Sum_probs=29.0

Q ss_pred             CceEEEEecChHHHHHHHHHhhCC--CEEEEECCCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFG--CNVLYNSRSK  194 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G--~~V~~~~~~~  194 (331)
                      -|+|+|||.|.-|-.+|..|+..|  .+|+++.++.
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            478999999999999999986544  6999998774

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.61  E-value=0.4  Score=39.50  Aligned_cols=63  Identities=25%  Similarity=0.346  Sum_probs=44.6

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHh--------------------hCCC-EEEEECCCCCC-CCccccCCHHhhhcCCCE
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQ--------------------AFGC-NVLYNSRSKKP-VPYAFYSNVCELAANSDA  214 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~--------------------~~G~-~V~~~~~~~~~-~~~~~~~~l~ell~~aDi  214 (331)
                      ..+.|++|.|||-|+.+--+|+.+.                    ..|. +|+.+.|.... ..+. ...+.|+.+..++
T Consensus        35 ~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~~~~ft-~~Elre~~~l~~~  113 (216)
T d1lqta1          35 PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFT-TLELRELADLDGV  113 (216)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCC-HHHHHHGGGCTTE
T ss_pred             ccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChHhCCCC-hhhhhhhcccCCC
Confidence            4678999999999999999999876                    4676 68777665433 2221 2357777777776


Q ss_pred             EEEecc
Q 020073          215 LIICCA  220 (331)
Q Consensus       215 V~l~~P  220 (331)
                      -+..-|
T Consensus       114 ~~~~~~  119 (216)
T d1lqta1         114 DVVIDP  119 (216)
T ss_dssp             EEECCG
T ss_pred             CccCCH
Confidence            666543

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.23  E-value=0.16  Score=43.02  Aligned_cols=33  Identities=27%  Similarity=0.436  Sum_probs=30.5

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      +|.|||.|..|-.+|..|+..|.+|.++++.+.
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            599999999999999999999999999998753

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.20  E-value=0.071  Score=43.19  Aligned_cols=81  Identities=16%  Similarity=0.258  Sum_probs=53.3

Q ss_pred             CceEEEEe-cChHHHHHHHHHhhCCCE-EEEECCCCCC-------CCc-----cccCCHHhhhcC-----CCEEEEeccC
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQAFGCN-VLYNSRSKKP-------VPY-----AFYSNVCELAAN-----SDALIICCAL  221 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~~~G~~-V~~~~~~~~~-------~~~-----~~~~~l~ell~~-----aDiV~l~~P~  221 (331)
                      +.+|.|.| .|.+|+..++.++.+|++ |++.+.+.+.       .+.     ....++.+.+++     .|+|+-++- 
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG-  109 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG-  109 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC-
Confidence            47899999 599999999999999996 5555544322       111     112344444333     888887763 


Q ss_pred             ChhhhhhccHHHHhcCCCCcEEEEcC
Q 020073          222 TDQTRRMINREVMLALGKEGIIVNVG  247 (331)
Q Consensus       222 t~~t~~li~~~~l~~mk~ga~lIn~s  247 (331)
                       .+   . -...++.++++..++.++
T Consensus       110 -g~---~-~~~~~~~l~~~G~iv~~G  130 (187)
T d1vj1a2         110 -GD---I-SNTVISQMNENSHIILCG  130 (187)
T ss_dssp             -HH---H-HHHHHTTEEEEEEEEEC-
T ss_pred             -ch---h-HHHHhhhccccccEEEec
Confidence             12   1 245678889999888886

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=88.10  E-value=0.4  Score=39.95  Aligned_cols=52  Identities=23%  Similarity=0.259  Sum_probs=34.6

Q ss_pred             cChHHHHHHHHHhhCCCEEEEECCCCC-C-C-Cc--ccc-------CCHHhhhcCCCEEEEecc
Q 020073          169 LGNIGLQVAKRLQAFGCNVLYNSRSKK-P-V-PY--AFY-------SNVCELAANSDALIICCA  220 (331)
Q Consensus       169 ~G~IG~~~A~~l~~~G~~V~~~~~~~~-~-~-~~--~~~-------~~l~ell~~aDiV~l~~P  220 (331)
                      -|.+|.++|+.+..+|++|+++.-... . . ..  ...       ..+.+.+..+|+++.+.-
T Consensus        31 SGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p~~~~~~~~~t~~~m~~~~~~~~~~~D~~i~aAA   94 (223)
T d1u7za_          31 SGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAA   94 (223)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHHGGGCSEEEECCB
T ss_pred             cHHHHHHHHHHHHHcCCchhhhhcccccCcccccccceehhhHHHHHHHHhhhccceeEeeeec
Confidence            589999999999999999987643222 1 1 11  111       234455688998887653

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=88.03  E-value=0.24  Score=39.39  Aligned_cols=38  Identities=18%  Similarity=0.263  Sum_probs=33.1

Q ss_pred             CCCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          159 LGGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       159 l~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      ..|.+|.|-| .|.+|....+.++.+|++|+...++.++
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k   60 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREA   60 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSST
T ss_pred             CCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHH
Confidence            3467899999 6999999999999999999998887654

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=87.94  E-value=0.14  Score=41.22  Aligned_cols=37  Identities=19%  Similarity=0.315  Sum_probs=31.0

Q ss_pred             CCceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          160 GGKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       160 ~g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      .+.+|.|.| .|.+|+...+.++.+|++|++..+++++
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k   68 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST   68 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhH
Confidence            455777776 6999999999999999999998887654

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=87.86  E-value=0.2  Score=40.31  Aligned_cols=99  Identities=15%  Similarity=0.247  Sum_probs=51.8

Q ss_pred             eEEEEecChHHHHHHHHHhhCC---CEEEEECCCCCC--CCc-cccCC----HH-hh-hcCCCEEEEeccCChhhhhhcc
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFG---CNVLYNSRSKKP--VPY-AFYSN----VC-EL-AANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G---~~V~~~~~~~~~--~~~-~~~~~----l~-el-l~~aDiV~l~~P~t~~t~~li~  230 (331)
                      +|||=|||+||+.+.|.+....   ++|++.+.....  ..+ ..++|    ++ +. ...-+.+++    +.....+.+
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~i----ng~~I~~~~   77 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISV----DGKVIKVVS   77 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEE----TTEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEE----CCEEEEEec
Confidence            7999999999999999876432   567666543321  000 00111    11 11 112233222    111222222


Q ss_pred             HHHHhcC---CCCc-EEEEcCCCCccCHHHHHHHHHhCCc
Q 020073          231 REVMLAL---GKEG-IIVNVGRGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       231 ~~~l~~m---k~ga-~lIn~srg~~vd~~al~~aL~~~~i  266 (331)
                      ....+.+   +-|. ++|.+ .|.-.+.+.+..-|++|--
T Consensus        78 ~~~p~~i~W~~~gvDiViEc-TG~f~~~~~~~~hl~~Gak  116 (172)
T d1rm4a1          78 DRNPVNLPWGDMGIDLVIEG-TGVFVDRDGAGKHLQAGAK  116 (172)
T ss_dssp             CSCGGGSCHHHHTCCEEEEC-SSSCCBHHHHHHHHHTTCS
T ss_pred             CCChHHCChhhcCCCEEEec-CceEccHHHHHHHHhcCCc
Confidence            2222222   1233 67775 6888888888888888753

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=87.72  E-value=0.23  Score=41.56  Aligned_cols=32  Identities=22%  Similarity=0.173  Sum_probs=29.6

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      -|.|||.|-+|..+|..|...|.+|+++++..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            39999999999999999999999999999854

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=87.60  E-value=0.21  Score=42.33  Aligned_cols=83  Identities=20%  Similarity=0.312  Sum_probs=47.8

Q ss_pred             CceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhcCCCEEEEeccCCh--hhhhhccHHHHhcC
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAANSDALIICCALTD--QTRRMINREVMLAL  237 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~--~t~~li~~~~l~~m  237 (331)
                      ||.+.|-| .+.||+++|+.|...|++|+.++|+.+.... ...++.+.  ..++....+-.+.  +.+.+++ ...+..
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~-~~~~l~~~--g~~~~~~~~Dvs~~~~v~~~~~-~~~~~~   77 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRT-TLKELREA--GVEADGRTCDVRSVPEIEALVA-AVVERY   77 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHHHT--TCCEEEEECCTTCHHHHHHHHH-HHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHHHhc--CCcEEEEEeecCCHHHHHHHHH-HHHHHh
Confidence            56666777 5679999999999999999999986432100 01112211  2345555554332  4455553 334444


Q ss_pred             CCCcEEEEcC
Q 020073          238 GKEGIIVNVG  247 (331)
Q Consensus       238 k~ga~lIn~s  247 (331)
                      .+=-++||.+
T Consensus        78 g~iDilVnnA   87 (257)
T d2rhca1          78 GPVDVLVNNA   87 (257)
T ss_dssp             CSCSEEEECC
T ss_pred             CCCCEEEecc
Confidence            4434667653

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=87.49  E-value=0.19  Score=40.04  Aligned_cols=35  Identities=14%  Similarity=0.110  Sum_probs=31.1

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      +++.|.|||-|..|-..|..++.+|++|+++++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            46789999999999999999999999999887643

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=87.45  E-value=0.26  Score=39.55  Aligned_cols=100  Identities=16%  Similarity=0.194  Sum_probs=52.7

Q ss_pred             ceEEEEecChHHHHHHHHHhh---CCCEEEEECCCCCC--CCc-cccCC----H-HhhhcCCCEEEEeccCChhhhhhcc
Q 020073          162 KRVGIVGLGNIGLQVAKRLQA---FGCNVLYNSRSKKP--VPY-AFYSN----V-CELAANSDALIICCALTDQTRRMIN  230 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~---~G~~V~~~~~~~~~--~~~-~~~~~----l-~ell~~aDiV~l~~P~t~~t~~li~  230 (331)
                      .+|||=|||+||+.+.|.+..   .+.+|+..+.....  ..+ ..++|    + .++-...|.+++    +...-.+.+
T Consensus         1 ~kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~i----ng~~I~~~~   76 (169)
T d1hdgo1           1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIV----DGKEIKVFA   76 (169)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEE----TTEEEEEEC
T ss_pred             CEEEEECCChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEE----CCEEEEEEe
Confidence            379999999999999998863   35787776543321  000 00000    0 011112333333    112222332


Q ss_pred             HHHHhcCC---CCc-EEEEcCCCCccCHHHHHHHHHhCCc
Q 020073          231 REVMLALG---KEG-IIVNVGRGAVIDENEMVRCLVRGEI  266 (331)
Q Consensus       231 ~~~l~~mk---~ga-~lIn~srg~~vd~~al~~aL~~~~i  266 (331)
                      ....+.++   -|. ++|.+ .|.--+.+.+..-|++|--
T Consensus        77 ~~~p~~i~W~~~gvD~ViEc-TG~f~t~~~~~~hl~~Gak  115 (169)
T d1hdgo1          77 EPDPSKLPWKDLGVDFVIES-TGVFRNREKAELHLQAGAK  115 (169)
T ss_dssp             CSSGGGSCHHHHTCCEEEEC-SSSCCBHHHHTHHHHTTCS
T ss_pred             CCChhhCCccccCCCEEEEe-cceeccccchhhhccCCCc
Confidence            22222221   122 66665 6887888888888887643

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.41  E-value=0.3  Score=40.47  Aligned_cols=34  Identities=29%  Similarity=0.263  Sum_probs=30.4

Q ss_pred             eEEEEecChHHHHHHHHHhhCCC-EEEEECCCCCC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSKKP  196 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~~~  196 (331)
                      +|.|||.|.-|-.+|..|+..|. +|.++.+.+..
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   37 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            69999999999999999999996 89999886653

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=87.01  E-value=0.3  Score=42.39  Aligned_cols=36  Identities=28%  Similarity=0.282  Sum_probs=31.9

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      ....|.|||.|..|-.+|..|+..|.+|+++++.+.
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            456799999999999999999999999999987643

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=86.77  E-value=0.27  Score=39.85  Aligned_cols=30  Identities=17%  Similarity=0.207  Sum_probs=28.1

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEECCC
Q 020073          164 VGIVGLGNIGLQVAKRLQAFGCNVLYNSRS  193 (331)
Q Consensus       164 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~  193 (331)
                      |.|||.|..|...|..++.+|.+|.++++.
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999764

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.45  E-value=0.38  Score=36.58  Aligned_cols=36  Identities=31%  Similarity=0.375  Sum_probs=29.9

Q ss_pred             CceEEEEecChHHHHHHHHH----hhCCCEEEEECCCCCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRL----QAFGCNVLYNSRSKKP  196 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l----~~~G~~V~~~~~~~~~  196 (331)
                      .+++.|||.|.+|-++|..+    +..|.+|+.+.+....
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~   76 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN   76 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccC
Confidence            57899999999999998777    4679999988876544

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=86.44  E-value=0.48  Score=40.47  Aligned_cols=30  Identities=20%  Similarity=0.295  Sum_probs=26.6

Q ss_pred             eEEEEe-cChHHHHHHHHHhhCCCEEEEECC
Q 020073          163 RVGIVG-LGNIGLQVAKRLQAFGCNVLYNSR  192 (331)
Q Consensus       163 ~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~  192 (331)
                      +|.|.| .|-||+.+++.|...|.+|+++++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            577777 899999999999999999999874

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=85.85  E-value=0.24  Score=34.37  Aligned_cols=36  Identities=19%  Similarity=0.331  Sum_probs=31.4

Q ss_pred             CCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          160 GGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .|.++.|.|. |.+|....+.++.+|++|++..++++
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~   67 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES   67 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHH
Confidence            5778999885 99999999999999999998877654

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=85.78  E-value=0.36  Score=38.50  Aligned_cols=32  Identities=28%  Similarity=0.353  Sum_probs=26.1

Q ss_pred             eEEEEecChHHHHHHHHHhhC-CCEEEEECCCC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAF-GCNVLYNSRSK  194 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~-G~~V~~~~~~~  194 (331)
                      +|||=|||+||+.+.|.+... .++|.+.+...
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd~~   35 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDLL   35 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSS
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCC
Confidence            799999999999999988765 46877776543

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.62  E-value=0.39  Score=41.07  Aligned_cols=33  Identities=24%  Similarity=0.203  Sum_probs=29.7

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      |+|.|.| .|-||+.+++.|...|++|++++|..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            6789999 79999999999999999999998764

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.60  E-value=0.46  Score=36.55  Aligned_cols=32  Identities=31%  Similarity=0.403  Sum_probs=27.5

Q ss_pred             ceEEEEecChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      .+|.|||.|.+|-++|..|+. +.+|.++++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            379999999999999999976 67999887654

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.59  E-value=1  Score=39.09  Aligned_cols=123  Identities=11%  Similarity=0.215  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhC----CC-------EEE
Q 020073          120 AADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAF----GC-------NVL  188 (331)
Q Consensus       120 vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~----G~-------~V~  188 (331)
                      +|=.+++-+|+.+|-                    .+++|...++.|.|.|.-|-.+|+.+...    |+       +|+
T Consensus         4 Ta~V~lAglinAlki--------------------~gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~   63 (294)
T d1pj3a1           4 TAAVALAGLLAAQKV--------------------ISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIW   63 (294)
T ss_dssp             HHHHHHHHHHHHHHH--------------------HCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEE
T ss_pred             HHHHHHHHHHHHHHH--------------------hCCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEE
Confidence            556677777776653                    24568889999999999999999987643    33       488


Q ss_pred             EECCCC-----C-C-C-Cc----------cccCCHHhhhc--CCCEEEEeccCChhhhhhccHHHHh---cCCCCcEEEE
Q 020073          189 YNSRSK-----K-P-V-PY----------AFYSNVCELAA--NSDALIICCALTDQTRRMINREVML---ALGKEGIIVN  245 (331)
Q Consensus       189 ~~~~~~-----~-~-~-~~----------~~~~~l~ell~--~aDiV~l~~P~t~~t~~li~~~~l~---~mk~ga~lIn  245 (331)
                      .+|+..     . . . ..          ....+|.++++  +.|+++-+.    ..-++++++.++   .|.+..++.=
T Consensus        64 lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~~~kptvliG~S----~~~g~ft~evi~~Ma~~~~~PIIFa  139 (294)
T d1pj3a1          64 MFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVA----GAGRLFTPDVIRAMASINERPVIFA  139 (294)
T ss_dssp             EEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHHHCCSEEEECC----CSSCCSCHHHHHHHHHHCSSCEEEE
T ss_pred             EEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHHhcCCceEEEec----CCCCcCCHHHHHHHHhcCCCcEEEE
Confidence            777632     1 1 0 00          01236888765  777776653    123567777665   4558888888


Q ss_pred             cCCCCc---cCHHHHHHHHHhCCc
Q 020073          246 VGRGAV---IDENEMVRCLVRGEI  266 (331)
Q Consensus       246 ~srg~~---vd~~al~~aL~~~~i  266 (331)
                      .|...-   ...++.+++-+.+-|
T Consensus       140 LSNPt~~~e~~~~~a~~~t~grai  163 (294)
T d1pj3a1         140 LSNPTAQAECTAEEAYTLTEGRCL  163 (294)
T ss_dssp             CCSSGGGCSCCHHHHHHHTTTCCE
T ss_pred             ccCCCCcCCcCHHHHHhhccCceE
Confidence            887643   245555554443334

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.56  E-value=0.28  Score=39.30  Aligned_cols=35  Identities=20%  Similarity=0.054  Sum_probs=31.0

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      +.++|.|||.|..|-..|..+..+|++++++++..
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            46789999999999999999999999999887543

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.50  E-value=0.37  Score=39.97  Aligned_cols=36  Identities=22%  Similarity=0.286  Sum_probs=30.9

Q ss_pred             CceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      +.+|.|.| .|.||+++|+.|...|++|+..+++...
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~   38 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   38 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence            34677888 6899999999999999999999987654

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=85.48  E-value=0.71  Score=34.62  Aligned_cols=38  Identities=21%  Similarity=0.281  Sum_probs=34.1

Q ss_pred             cCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          158 KLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       158 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      -.+||+|+|||.|..+-.-|..|..+.-+|+++-|..+
T Consensus        24 ~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          24 FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             GGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             HhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            45899999999999999999999999999998877654

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=85.47  E-value=0.51  Score=40.85  Aligned_cols=58  Identities=24%  Similarity=0.228  Sum_probs=39.4

Q ss_pred             eEEEEe-cChHHHHHHHHHhhCC-CEEEEECCCCCC-------CCc-------cccCCHHh-hhcCCCEEEEecc
Q 020073          163 RVGIVG-LGNIGLQVAKRLQAFG-CNVLYNSRSKKP-------VPY-------AFYSNVCE-LAANSDALIICCA  220 (331)
Q Consensus       163 ~vgIiG-~G~IG~~~A~~l~~~G-~~V~~~~~~~~~-------~~~-------~~~~~l~e-ll~~aDiV~l~~P  220 (331)
                      +|.|.| .|-||+.+++.|...| .+|++.++....       ...       ....++.+ +..++|+|+-+.-
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~   76 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA   76 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence            688888 7999999999998888 589988764322       011       11123333 6778998776553

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.46  E-value=0.34  Score=41.79  Aligned_cols=33  Identities=27%  Similarity=0.317  Sum_probs=30.1

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .+.|||.|..|-.+|+.|+..|.+|.++..+..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            589999999999999999999999999987654

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=85.33  E-value=0.36  Score=41.03  Aligned_cols=32  Identities=28%  Similarity=0.457  Sum_probs=28.7

Q ss_pred             eEEEEecChHHHHHHHHHhhCCC-EEEEECCCC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRSK  194 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~-~V~~~~~~~  194 (331)
                      .|.|||.|.+|-.+|..|...|. +|++.++..
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            58999999999999999999997 699998764

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.08  E-value=0.38  Score=39.52  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=30.5

Q ss_pred             CceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      .|++.|-| .+.||+++|+.|...|++|++.+++.+.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            36777777 5899999999999999999999987654

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=85.07  E-value=0.44  Score=40.69  Aligned_cols=58  Identities=21%  Similarity=0.211  Sum_probs=40.8

Q ss_pred             CceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCCCCccccCCHHhhhc--CCCEEEEec
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKPVPYAFYSNVCELAA--NSDALIICC  219 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~~  219 (331)
                      -|+|.|.| .|-||+.+++.|...|..|++.+...+. .......++++++  ..|+|+.+.
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~~-~~~~~~~~~~~~~~~~~d~v~~~a   62 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDEL-NLLDSRAVHDFFASERIDQVYLAA   62 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTC-CTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchhc-cccCHHHHHHHHhhcCCCEEEEcc
Confidence            36899999 8999999999999999988877654332 1111233455543  468888765

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.88  E-value=0.37  Score=35.56  Aligned_cols=36  Identities=28%  Similarity=0.267  Sum_probs=28.7

Q ss_pred             CceEEEEecChHHHHHHHHHhhCC---CEEEEECCCCCC
Q 020073          161 GKRVGIVGLGNIGLQVAKRLQAFG---CNVLYNSRSKKP  196 (331)
Q Consensus       161 g~~vgIiG~G~IG~~~A~~l~~~G---~~V~~~~~~~~~  196 (331)
                      .+++.|||.|.+|-++|..+..+|   .+|..+.+...-
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i   58 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI   58 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence            368999999999999998777665   478888775543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=84.87  E-value=0.43  Score=39.99  Aligned_cols=31  Identities=26%  Similarity=0.405  Sum_probs=29.0

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          164 VGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       164 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      |.|||.|.+|-.+|..|...|.+|+++++..
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            8999999999999999999999999998754

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=84.81  E-value=0.33  Score=38.95  Aligned_cols=101  Identities=14%  Similarity=0.188  Sum_probs=53.7

Q ss_pred             ceEEEEecChHHHHHHHHHhhC----CCEEEEECCCCCC--CCc-cccCC----H-HhhhcCCCEEEEeccCChhhhhhc
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF----GCNVLYNSRSKKP--VPY-AFYSN----V-CELAANSDALIICCALTDQTRRMI  229 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~----G~~V~~~~~~~~~--~~~-~~~~~----l-~ell~~aDiV~l~~P~t~~t~~li  229 (331)
                      .+|||=|||+||+.+.|.+...    .++|+..+.....  ..+ ..++|    + .++-...+.+++    +.....++
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i----~g~~i~i~   77 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVV----NGDKIRVD   77 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEE----TTEEEEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEE----CCEEEEEE
Confidence            3799999999999999988642    3467666543322  000 00000    1 112223344433    22223333


Q ss_pred             cHHHHhcC---CCCc-EEEEcCCCCccCHHHHHHHHHhCCce
Q 020073          230 NREVMLAL---GKEG-IIVNVGRGAVIDENEMVRCLVRGEIA  267 (331)
Q Consensus       230 ~~~~l~~m---k~ga-~lIn~srg~~vd~~al~~aL~~~~i~  267 (331)
                      .....+.+   +-|. ++|.+ .|.--+.+.+..-|++|--+
T Consensus        78 ~~~~p~~i~W~~~gvDiViEc-TG~f~~~~~a~~hl~~Gakk  118 (173)
T d1obfo1          78 ANRNPAQLPWGALKVDVVLEC-TGFFTTKEKAGAHIKGGAKK  118 (173)
T ss_dssp             CCSCGGGSCTTTTTCSEEEEC-SSSCCSHHHHHHHHHHTCSE
T ss_pred             ecCCHHHCcccccccceEEEe-cccccCHHHHHHHhccCCcc
Confidence            33222222   2233 56665 67777888888888887544

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=84.57  E-value=0.44  Score=39.12  Aligned_cols=32  Identities=34%  Similarity=0.395  Sum_probs=29.5

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          164 VGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       164 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      |.|||.|..|...|..|+..|++|+++++...
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            88999999999999999999999999987654

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=84.18  E-value=0.36  Score=38.92  Aligned_cols=31  Identities=23%  Similarity=0.247  Sum_probs=28.6

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          164 VGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       164 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      |.|||.|..|...|..+..+|.+|+++++..
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            8899999999999999999999999997653

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=84.15  E-value=0.44  Score=38.55  Aligned_cols=38  Identities=26%  Similarity=0.582  Sum_probs=32.4

Q ss_pred             ccCCCceEEEEecChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          157 SKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       157 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      .+++||+|.|||.|.-|-.+|..+..-+.+++..-++.
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            46899999999999999999999988888876665544

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=83.96  E-value=0.4  Score=38.30  Aligned_cols=30  Identities=23%  Similarity=0.409  Sum_probs=24.5

Q ss_pred             eEEEEecChHHHHHHHHHhhC-CCEEEEECC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAF-GCNVLYNSR  192 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~-G~~V~~~~~  192 (331)
                      +|||=|||+||+.+.|.+... ..+|++.+.
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd   33 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAIND   33 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEecC
Confidence            799999999999999987643 568877654

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.72  E-value=0.76  Score=39.88  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=27.7

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCC
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRS  193 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~  193 (331)
                      |+|.|.| .|-||+.+++.|...|.+|+++++.
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~   34 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNL   34 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECC
Confidence            5677777 7999999999999999999998753

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.32  E-value=0.43  Score=40.47  Aligned_cols=32  Identities=34%  Similarity=0.399  Sum_probs=29.1

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          164 VGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       164 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      |.|||.|..|-..|..|+..|.+|+++.++..
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~   33 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARDR   33 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            78999999999999999999999999987543

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.19  E-value=0.33  Score=39.47  Aligned_cols=35  Identities=23%  Similarity=0.154  Sum_probs=29.8

Q ss_pred             ceEEEEecChHHHHHHHHHhhCC-------CEEEEECCCCCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAFG-------CNVLYNSRSKKP  196 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~G-------~~V~~~~~~~~~  196 (331)
                      .+|+|||.|.-|-+.|..|...|       ++|.+|++.+..
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~   44 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   44 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCC
Confidence            48999999999999999997665       689999887654

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.18  E-value=0.45  Score=42.20  Aligned_cols=31  Identities=29%  Similarity=0.341  Sum_probs=28.2

Q ss_pred             CceEEEEe-cChHHHHHHHHHhhCCCEEEEEC
Q 020073          161 GKRVGIVG-LGNIGLQVAKRLQAFGCNVLYNS  191 (331)
Q Consensus       161 g~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~  191 (331)
                      |++|.|.| .|-||+.+++.|...|.+|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            78999999 79999999999999999999986

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.14  E-value=0.51  Score=38.18  Aligned_cols=32  Identities=28%  Similarity=0.349  Sum_probs=29.1

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          164 VGIVGLGNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       164 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      |.|||.|..|...|..+...|.+|.+++....
T Consensus         8 viVIG~GpAGl~aA~~aa~~G~kV~lie~~~~   39 (233)
T d1v59a1           8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK   39 (233)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            78999999999999999999999999986543

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=83.02  E-value=0.62  Score=38.64  Aligned_cols=35  Identities=23%  Similarity=0.215  Sum_probs=29.2

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP  196 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~  196 (331)
                      |.+.|-| .+.||+++|+.|...|++|++.+++..+
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~   37 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE   37 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH
Confidence            4566778 5679999999999999999998887654

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=82.76  E-value=0.52  Score=37.58  Aligned_cols=33  Identities=12%  Similarity=0.309  Sum_probs=27.5

Q ss_pred             ceEEEEecChHHHHHHHHHhhC--CCEEEEECCCC
Q 020073          162 KRVGIVGLGNIGLQVAKRLQAF--GCNVLYNSRSK  194 (331)
Q Consensus       162 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~~~~~  194 (331)
                      ++|.|||.|.+|-++|..|+.+  +.+|+++.+..
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            4799999999999999999876  45788887643

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=82.73  E-value=0.48  Score=38.41  Aligned_cols=31  Identities=23%  Similarity=0.229  Sum_probs=28.7

Q ss_pred             eEEEEecChHHHHHHHHHhhCCCEEEEECCC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAFGCNVLYNSRS  193 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~  193 (331)
                      -+.|||.|..|...|..++.+|.+|.++++.
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            4899999999999999999999999998764

>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Quinone reductase
domain: Quinone reductase type 2 (menadione reductase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.72  E-value=10  Score=30.35  Aligned_cols=151  Identities=17%  Similarity=0.204  Sum_probs=82.4

Q ss_pred             CceEEEE-ec-------ChHHHHHHHHHhhCCCEEEEECCCCCC----CCcc--------------------------cc
Q 020073          161 GKRVGIV-GL-------GNIGLQVAKRLQAFGCNVLYNSRSKKP----VPYA--------------------------FY  202 (331)
Q Consensus       161 g~~vgIi-G~-------G~IG~~~A~~l~~~G~~V~~~~~~~~~----~~~~--------------------------~~  202 (331)
                      |++|.|| |-       ..+...+.+.++..|++|.+.|-....    ....                          ..
T Consensus         2 ~mKiLiI~ghp~~~S~t~~l~~~~~~~~~~~g~ev~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (230)
T d2qwxa1           2 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLA   81 (230)
T ss_dssp             CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBC
T ss_pred             CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCEEEEEEccccCCcccchHHHhhhccCchhhhcchhhhhhhhhccccc
Confidence            5666644 32       345566667777889999888764332    0000                          00


Q ss_pred             ---CCHHhhhcCCCEEEEeccC-----ChhhhhhccHHH-------------HhcCCCCcEEEEcCCCCcc---------
Q 020073          203 ---SNVCELAANSDALIICCAL-----TDQTRRMINREV-------------MLALGKEGIIVNVGRGAVI---------  252 (331)
Q Consensus       203 ---~~l~ell~~aDiV~l~~P~-----t~~t~~li~~~~-------------l~~mk~ga~lIn~srg~~v---------  252 (331)
                         ..+.+.+..||.|++..|.     +...++.||.=.             ...++....++-+++|+..         
T Consensus        82 ~di~~~~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrV~~~g~af~~~~~~~~g~l~~kk~~~i~t~g~~~~~~~~~g~~  161 (230)
T d2qwxa1          82 SDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVN  161 (230)
T ss_dssp             HHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSCTGGGSTTSTT
T ss_pred             HHHHHHHHHHHhCCEEEEEeCcccccCCHHHHHHHHHhcccCcccccCCCCCcccccCCeEEEEeccCCchhhccccccc
Confidence               1233568889999999994     446677776521             1123333343434444321         


Q ss_pred             -CHHHHHHHHHhCCceEEEeecCCCCCCCCCccccCCceEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 020073          253 -DENEMVRCLVRGEIAGAGLDVFENEPYVPKELLELDNVVLQPHRAVFTSECFVDLCELAVGNLEALFSNQPLL  325 (331)
Q Consensus       253 -d~~al~~aL~~~~i~ga~lDV~~~EP~~~~~L~~~~nvilTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~  325 (331)
                       ....+...+........+.++.             +.+.+ -.....+.+....+.+...+.+.+..+.++++
T Consensus       162 ~~~~~~~~~~~~~~~~~~G~~~~-------------~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~p  221 (230)
T d2qwxa1         162 GDSRYFLWPLQHGTLHFCGFKVL-------------APQIS-FAPEIASEEERKGMVAAWSQRLQTIWKEEPIP  221 (230)
T ss_dssp             CCHHHHHHHHHCCCCCTTTCEEC-------------CCEEE-CCTTTSCHHHHHHHHHHHHHHHHTGGGCCCCC
T ss_pred             ccHHHHHHHHHHHHHHhCCCeEc-------------ceEEE-ecCCCCCHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence             2334444444433332222221             11111 12334577888888999999999888877754

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=82.29  E-value=0.64  Score=36.21  Aligned_cols=30  Identities=27%  Similarity=0.149  Sum_probs=27.7

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEECCC
Q 020073          164 VGIVGLGNIGLQVAKRLQAFGCNVLYNSRS  193 (331)
Q Consensus       164 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~  193 (331)
                      |.|||.|.+|-..|..+..+|++|++.++.
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            789999999999999999999999988764

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=82.16  E-value=0.53  Score=37.46  Aligned_cols=30  Identities=27%  Similarity=0.364  Sum_probs=24.9

Q ss_pred             eEEEEecChHHHHHHHHHhhC-CCEEEEECC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAF-GCNVLYNSR  192 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~-G~~V~~~~~  192 (331)
                      +|||=|||+||+.+.|.+... ..+|.+.+-
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd   32 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAIND   32 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECC
Confidence            699999999999999998754 568877653

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.70  E-value=0.7  Score=37.58  Aligned_cols=31  Identities=29%  Similarity=0.301  Sum_probs=28.8

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEECCCC
Q 020073          164 VGIVGLGNIGLQVAKRLQAFGCNVLYNSRSK  194 (331)
Q Consensus       164 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~~  194 (331)
                      |.|||.|..|...|..++.+|++|.+++..+
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            8899999999999999999999999998654

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=81.43  E-value=2.3  Score=36.91  Aligned_cols=107  Identities=18%  Similarity=0.191  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHcCCcccCCCCCCCccCCCceEEEEecChHHHHHHHHHhhC----CC-------EEE
Q 020073          120 AADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAF----GC-------NVL  188 (331)
Q Consensus       120 vAE~al~l~L~~~r~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~----G~-------~V~  188 (331)
                      +|=.+++.+|+.+|-                    .++.|...++.|.|.|.-|-.+|+.+...    |.       +|+
T Consensus         4 Ta~V~lAglinAlki--------------------~gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~   63 (308)
T d1o0sa1           4 TASVIVAGLLTCTRV--------------------TKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIY   63 (308)
T ss_dssp             HHHHHHHHHHHHHHH--------------------HCCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEE
T ss_pred             HHHHHHHHHHHHHHH--------------------hCCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEE
Confidence            555677777776653                    24568889999999999999999987643    32       488


Q ss_pred             EECCCCC------C-C----Cc----cccCCHHhhhcC--CCEEEEeccCChhhhhhccHHHHhcC---CCCcEEEEcCC
Q 020073          189 YNSRSKK------P-V----PY----AFYSNVCELAAN--SDALIICCALTDQTRRMINREVMLAL---GKEGIIVNVGR  248 (331)
Q Consensus       189 ~~~~~~~------~-~----~~----~~~~~l~ell~~--aDiV~l~~P~t~~t~~li~~~~l~~m---k~ga~lIn~sr  248 (331)
                      .+|+..-      . .    .+    ....+|.++++.  .++++-+-    ...++++++.++.|   .+..++.=.|.
T Consensus        64 ~vD~~Glv~~~r~d~~~~k~~~a~~~~~~~~l~~~i~~~kptvliG~s----~~~g~ft~evv~~Ma~~~~~PIIFaLSN  139 (308)
T d1o0sa1          64 LMDIDGLVTKNRKEMNPRHVQFAKDMPETTSILEVIRAARPGALIGAS----TVRGAFNEEVIRAMAEINERPIIFALSN  139 (308)
T ss_dssp             EEETTEECBTTCSSCCGGGTTTCBSSCCCCCHHHHHHHHCCSEEEECS----SCTTCSCHHHHHHHHHHCSSCEEEECCS
T ss_pred             EEeCCCCccCCCcccCHHHHHHHHhcccCCcHHHHHhccccccEEecc----cccCCCCHHHHHHHHhhCCCcEEEEccC
Confidence            8876421      1 0    01    012345555442  34444431    12456666666555   36677777766


Q ss_pred             CC
Q 020073          249 GA  250 (331)
Q Consensus       249 g~  250 (331)
                      ..
T Consensus       140 Pt  141 (308)
T d1o0sa1         140 PT  141 (308)
T ss_dssp             SG
T ss_pred             CC
Confidence            54

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.02  E-value=0.66  Score=35.50  Aligned_cols=48  Identities=21%  Similarity=0.338  Sum_probs=32.4

Q ss_pred             eEEEEe-cChHHHHHHHHHh-hCCCEEE-EECCCCCCCCccccCCHHhh-hcCCCEEEEec
Q 020073          163 RVGIVG-LGNIGLQVAKRLQ-AFGCNVL-YNSRSKKPVPYAFYSNVCEL-AANSDALIICC  219 (331)
Q Consensus       163 ~vgIiG-~G~IG~~~A~~l~-~~G~~V~-~~~~~~~~~~~~~~~~l~el-l~~aDiV~l~~  219 (331)
                      +|+|+| .|+||+.+++.+. .-++++. .+|+..         ++.++ ...+|+|+=-.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~---------~~~~~~~~~~DvvIDFS   52 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD---------PLSLLTDGNTEVVIDFT   52 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC---------CTHHHHTTTCSEEEECC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC---------chhhhccccCCEEEEcc
Confidence            689999 6999999999875 4577765 455421         22232 25688777554

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=81.02  E-value=0.49  Score=37.22  Aligned_cols=36  Identities=14%  Similarity=0.268  Sum_probs=30.8

Q ss_pred             CCceEEEEec-ChHHHHHHHHHhhCCCEEEEECCCCC
Q 020073          160 GGKRVGIVGL-GNIGLQVAKRLQAFGCNVLYNSRSKK  195 (331)
Q Consensus       160 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~~~~~~  195 (331)
                      .|.+|.|.|. |.+|..+++.++.+|++|++.+++.+
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~   64 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQ   64 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchH
Confidence            4789999964 55999999999999999999987654

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=80.79  E-value=0.51  Score=39.40  Aligned_cols=57  Identities=16%  Similarity=0.311  Sum_probs=36.9

Q ss_pred             ceEEEEe-cChHHHHHHHHHhhCCCEEEEECCCCCC-C-CccccCCHHhhhcC--CCEEEEec
Q 020073          162 KRVGIVG-LGNIGLQVAKRLQAFGCNVLYNSRSKKP-V-PYAFYSNVCELAAN--SDALIICC  219 (331)
Q Consensus       162 ~~vgIiG-~G~IG~~~A~~l~~~G~~V~~~~~~~~~-~-~~~~~~~l~ell~~--aDiV~l~~  219 (331)
                      ++|.|.| .|-||+.+++.|...|. +++.++.... . .......+++++++  .|+|+-+.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~-~v~~~~~~~~~~~Dl~~~~~~~~~i~~~~~D~Vih~A   62 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAA   62 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSE-EEEECTTCSSSCCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEECCCccccCcCCCHHHHHHHHHHcCCCEEEEec
Confidence            3688999 59999999999998876 4444444333 1 11122345666654  59877654

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.77  E-value=1.1  Score=34.78  Aligned_cols=35  Identities=20%  Similarity=0.223  Sum_probs=28.7

Q ss_pred             CCceEEEEecChHHHHHHHHHhhCCCE-EEEECCCC
Q 020073          160 GGKRVGIVGLGNIGLQVAKRLQAFGCN-VLYNSRSK  194 (331)
Q Consensus       160 ~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~~~~~  194 (331)
                      .+++|.|||-|.+|-..|..+..+|++ |+.+.|..
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            466799999999999999999999985 65665543

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.51  E-value=1.2  Score=37.03  Aligned_cols=66  Identities=18%  Similarity=0.270  Sum_probs=43.6

Q ss_pred             CCceEEEEec-ChHHHHHHHHHh---hCCCEEEEECCCCCCCCccccCCHHhhh-cCCCEEEEeccCCh--hhhhhcc
Q 020073          160 GGKRVGIVGL-GNIGLQVAKRLQ---AFGCNVLYNSRSKKPVPYAFYSNVCELA-ANSDALIICCALTD--QTRRMIN  230 (331)
Q Consensus       160 ~g~~vgIiG~-G~IG~~~A~~l~---~~G~~V~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l~~P~t~--~t~~li~  230 (331)
                      +.|||.|-|. +.||+++|+.|.   .-|.+|+..+|+.+..     .++.++. ....+.++.|-.+.  +.+.++.
T Consensus         1 ~MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~-----~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~   73 (248)
T d1snya_           1 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQA-----KELEDLAKNHSNIHILEIDLRNFDAYDKLVA   73 (248)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSC-----HHHHHHHHHCTTEEEEECCTTCGGGHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHH-----HHHHHHHhcCCcEEEEEEEeccHHHHHHHHh
Confidence            3689999995 789999999985   4588999999876541     1233332 23566666665443  3344443

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.47  E-value=0.72  Score=37.05  Aligned_cols=30  Identities=23%  Similarity=0.318  Sum_probs=27.8

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEECCC
Q 020073          164 VGIVGLGNIGLQVAKRLQAFGCNVLYNSRS  193 (331)
Q Consensus       164 vgIiG~G~IG~~~A~~l~~~G~~V~~~~~~  193 (331)
                      +.|||.|..|...|..+..+|.+|.+.+..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999998754

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=80.39  E-value=0.61  Score=37.26  Aligned_cols=31  Identities=29%  Similarity=0.380  Sum_probs=25.1

Q ss_pred             eEEEEecChHHHHHHHHHhhC-CCEEEEECCC
Q 020073          163 RVGIVGLGNIGLQVAKRLQAF-GCNVLYNSRS  193 (331)
Q Consensus       163 ~vgIiG~G~IG~~~A~~l~~~-G~~V~~~~~~  193 (331)
                      +|||=|||+||+.+.|.+... .++|.+.+..
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaINd~   34 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVNDL   34 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEcCC
Confidence            699999999999999988643 5677776643

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=80.37  E-value=0.74  Score=39.38  Aligned_cols=33  Identities=30%  Similarity=0.296  Sum_probs=28.9

Q ss_pred             EEEEecChHHHHHHHHHh-----hCCCEEEEECCCCCC
Q 020073          164 VGIVGLGNIGLQVAKRLQ-----AFGCNVLYNSRSKKP  196 (331)
Q Consensus       164 vgIiG~G~IG~~~A~~l~-----~~G~~V~~~~~~~~~  196 (331)
                      |.|||.|..|-.+|..|.     ..|.+|+++++.+..
T Consensus        10 V~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1          10 VLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             EEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            899999999999999995     469999999987654