Citrus Sinensis ID: 020088

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
Protein Sequence
MGNKKKRGGLEPELKEAATGENHESQNELSLANGDSSSCDNKKKKKRKRDQLNDDAPIEVPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRSNRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPRQVVPPSKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHLLIAFGGLAGLEESIEEDDGLKVHYLLKSYSLY
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHccccccHHHHHHHHcccccccHHHHHHHHHcccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHccccccEEcccccccccccccccccccccEEEEEEEccccccccEEEEEccccccccccccccccEEEEEcccccccccccccccccccccccccccccEEEEEEccHHHHHHHccccccccEEEEEcccccccccccccccccccEEEEEccccHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHcccccccHHHcccccccccccHHHHcccHHHccccccccccEEEEEEccHHHHccccHHHHHHHHHHHHHHHHHEEccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHccccHHHccHHHccccccccccccccccccccEEEEEccccccccEEEEccccccEEEccccccccEEEEEEccccccccccccEEEcccccccccEEEEEEEEEcccHHHHHHccccccccEEEEEEccccccccccccccccccEEEEEEccHHHHHHHHHHccccccccHHHHHccc
Coil and Loop (DISEMBL)
mgnkkkrgglepelkeaatgenhesqnelslangdssscdnkkkkkrkrdqlnddapievptvsvavpgsiidntQSLELATRLAGQIARAVTIFRIDEVvvfdnksssdnysrssaanrsnrsdenesGAAFLVRLLQYLETPQYLRKALFSMHSSlrfvgmlppldaphhlrkhewapfregvtlkenapnsvgtLVDVGLNKHVVVDQVLDPGVRVTVAMgtnrnldadsprqvvppskpkesgmywgykvryapnissvfkncsykggydhligtsehgdivnssdltlpTFRHLLIAFGglagleesieeddglkvHYLLKSYSLY
Flexible Loop (DISEMBL)
mgnkkkrgglepelkeaatgenhesqnelslangdssscdnkkkkkrkrdqlnddapievptvsvavpgsiIDNTQSLELATRLAGQIARAVTIFRIDEVvvfdnksssdnysrssaanrsnrsdeneSGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGtnrnldadsprqvvppskpkesgmywGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHLLIAFGGLAGLEESieeddglkvhyllksysly
Low Complexity Region (SEG)
MGNKKKRGGLEPELKEAATGENHESQNELSLANGDSSSCDNkkkkkrkrDQLNDDAPIEVPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKsssdnysrssaanrsnrsdENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPRQVVPPSKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHLLIAFGGLAGLEESIEEDDGLKVHYLLKSYSLY
Disordered region (IsUnstruct)
***********************************************************VPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFD**************************AAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMG**********************GMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHLLIAFGGLAGLEESIEEDDGLKVHYLLKS****
Disordered Region (DISOPRED)
*************************************************************TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKS*********************SGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAP*********PFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTN**********VVPPSKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNS*****PTFRHLLIAFGGLAGLEESIEEDDGLKVHYLLKSYSLY
Disordered Region (DISEMBL)
**********EPEL*************************************LNDDAPIEVPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDN***********************SGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPRQVVPPSKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHLLIAFGGLAGLEESIEEDDGLKVHYLLKSYSLY
Disordered Region (DISPRO)
*******************************************************APIEVPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKS********************ESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPRQVVPPSKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHLLIAFGGLAGLEESIEEDDGLKVHYLLKSYSLY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNKKKRGGLEPELKEAATGENHESQNELSLANGDSSSCDNKKKKKRKRDQLNDDAPIEVPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRSNRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPRQVVPPSKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHLLIAFGGLAGLEESIEEDDGLKVHYLLKSYSLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	331	2.2.26 [Sep-21-2011]
Q3UHX9	385	Uncharacterized protein C	yes	no	0.767	0.659	0.465	8e-60
Q5T280	376	Uncharacterized protein C	yes	no	0.797	0.702	0.441	5e-58
Q10950	378	Uncharacterized protein B	yes	no	0.752	0.658	0.345	2e-40
O13641	315	Uncharacterized protein C	yes	no	0.740	0.777	0.295	3e-23
P53336	341	Uncharacterized protein Y	yes	no	0.552	0.536	0.274	4e-12
Q06847	283	Uncharacterized protein V	yes	no	0.268	0.314	0.367	8e-11
Q04867	317	Uncharacterized protein Y	no	no	0.700	0.731	0.246	6e-10
P20571	281	Uncharacterized protein r	yes	no	0.459	0.540	0.266	5e-08

>sp|Q3UHX9|CI114_MOUSE Uncharacterized protein C9orf114 homolog OS=Mus musculus GN=D2Wsu81e PE=2 SV=1

 Score =  231 bits (588), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 122/262 (46%), Positives = 163/262 (62%), Gaps = 8/262 (3%)

Query: 62  TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
           T+SVA+PGSI+DN QS EL T LAGQIARA TIF +DE+VVFD +         S     
Sbjct: 75  TLSVALPGSILDNAQSPELRTYLAGQIARACTIFCVDEIVVFDEEGQDTK----SVEGEF 130

Query: 122 NRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPF 181
               +       L R+LQYLE PQYLRKA F  H  L+F G+L PLD+PHH+R+ E + F
Sbjct: 131 RGVGKKGQACVQLARILQYLECPQYLRKAFFPKHQDLQFAGILNPLDSPHHMRQDEESEF 190

Query: 182 REGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPR-QVVPP 240
           REGV +        G+LV+ G+ K V +D+ LDPG+RVTV +   +  +  + +  VV  
Sbjct: 191 REGVVVDRPTKAGHGSLVNCGMKKEVKIDKKLDPGLRVTVRLNQQQLPECKTYKGTVVSS 250

Query: 241 SKPK-ESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHL 299
             P+ ++G+YWGY VR A  +S+VF    ++ GYD  IGTSE G  V S+   LP+FRH 
Sbjct: 251 QDPRTKAGLYWGYTVRLASCLSAVFAEAPFQDGYDLTIGTSERGSDVASAQ--LPSFRHA 308

Query: 300 LIAFGGLAGLEESIEEDDGLKV 321
           L+ FGGL GLE +++ D  L+V
Sbjct: 309 LVVFGGLQGLEAAVDADPNLEV 330

Mus musculus (taxid: 10090)

>sp|Q5T280|CI114_HUMAN Uncharacterized protein C9orf114 OS=Homo sapiens GN=C9orf114 PE=1 SV=3

 Score =  224 bits (572), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 120/272 (44%), Positives = 161/272 (59%), Gaps = 8/272 (2%)

Query: 62  TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
           T+SVA+PGSI+DN QS EL T LAGQIARA  IF +DE+VVFD +               
Sbjct: 74  TLSVALPGSILDNAQSPELRTYLAGQIARACAIFCVDEIVVFDEEGQDAKTVEGEFTGVG 133

Query: 122 NRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPF 181
            +          L R+LQYLE PQYLRKA F  H  L+F G+L PLD+PHH+R+ E + F
Sbjct: 134 KKG----QACVQLARILQYLECPQYLRKAFFPKHQDLQFAGLLNPLDSPHHMRQDEESEF 189

Query: 182 REGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPR-QVVPP 240
           REG+ +        G+ V+ G+ K V +D+ L+PG+RVTV +   ++ D  +   +VV  
Sbjct: 190 REGIVVDRPTRPGHGSFVNCGMKKEVKIDKNLEPGLRVTVRLNQQQHPDCKTYHGKVVSS 249

Query: 241 SKPK-ESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHL 299
             P+ ++G+YWGY VR A  +S+VF    ++ GYD  IGTSE G  V S+   LP FRH 
Sbjct: 250 QDPRTKAGLYWGYTVRLASCLSAVFAEAPFQDGYDLTIGTSERGSDVASAQ--LPNFRHA 307

Query: 300 LIAFGGLAGLEESIEEDDGLKVHYLLKSYSLY 331
           L+ FGGL GLE   + D  L+V      + LY
Sbjct: 308 LVVFGGLQGLEAGADADPNLEVAEPSVLFDLY 339

Homo sapiens (taxid: 9606)

>sp|Q10950|YMP6_CAEEL Uncharacterized protein B0361.6 OS=Caenorhabditis elegans GN=B0361.6 PE=4 SV=1

 Score =  166 bits (420), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/269 (34%), Positives = 152/269 (56%), Gaps = 20/269 (7%)

Query: 62  TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
           T+S+AVPG  ++N QS EL T +AGQIARA T++R+DE++++D      + + ++  N +
Sbjct: 67  TISIAVPGQFLNNAQSAELRTYMAGQIARAATLYRVDEIIIYDESCRMTDEAVNAYYNGT 126

Query: 122 NR-----SDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKH 176
            +     ++ N  G  +L ++L+YLE PQYLRK LF +   L+  G+L PLDA HHL+  
Sbjct: 127 WQGNLIPAETNYEGCFYLAKILEYLECPQYLRKDLFPIQKPLKNAGLLNPLDAQHHLKYD 186

Query: 177 EWA-PFREGVTLKENAPNSVGTLVDVGLNKHVVVDQ---VLDPGVRVTVAMGTNRNLDAD 232
           E    FREGV LK+ + +  G + ++GL K   +D     L P  RVTV +   +NL   
Sbjct: 187 EKTLRFREGVVLKKRSKDGRGPICNIGLEKEFEIDSDAVQLPPYTRVTVEI---KNLTEQ 243

Query: 233 SP--RQVVP--PSKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNS 288
               R  +    +  +E+G+YWGY VR    +  V +       +D + G S  G + + 
Sbjct: 244 CKLYRGSITSGATVTRETGLYWGYSVRLMTGLQKVLQ----AKKFDIVAGVSPRGKLASQ 299

Query: 289 SDLTLPTFRHLLIAFGGLAGLEESIEEDD 317
            D+ +     +L+ FGG+AG++ ++E ++
Sbjct: 300 MDVCILNKPKILLVFGGVAGVDAAVESEE 328

Caenorhabditis elegans (taxid: 6239)

>sp|O13641|YGWG_SCHPO Uncharacterized protein C8D2.16c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pi049 PE=4 SV=1

 Score =  109 bits (272), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 135/271 (49%), Gaps = 26/271 (9%)

Query: 48  KRDQLNDDAPIEVPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKS 107
           K  ++    P    T+S+A+P S ++   +L+L T    +I+R V+++ IDE+++ ++  
Sbjct: 3   KESEIQSLPPTRRYTISLALPISSLNVAYNLQLKTSFVWKISRIVSLYGIDEIILLEDPE 62

Query: 108 SSDNYSRSSAANRSNRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLP-- 165
              N    + ++ +   D  +    FL  LL Y ETP ++RK LF ++  L++    P  
Sbjct: 63  YVQNTQVHTLSSDAYLKDPTK----FLTDLLCYFETPFFMRKELFPLNPHLKYTSCFPLL 118

Query: 166 PLDAPHHLRKHEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVD--QVLDPGVRVTVAM 223
           PL        +   P+REG+    +       +++ GL+ +V+V    VL P  RVTV  
Sbjct: 119 PLRNDKASTVNIEFPYREGIVTHPSPQAKNKYIINAGLSHNVIVSSPSVLAPRTRVTV-- 176

Query: 224 GTNRNLDADSPRQ-------VVPPSKPKES-GMYWGYKVRYAPNISSVFKNCSYKGGYDH 275
                L A SP +       +V  S P+E  G YWGYKVR   + S + K+  YKGGYD 
Sbjct: 177 ----RLKAQSPNEEGQLQGDIVSFSAPREKGGHYWGYKVRSCLS-SQLCKSSPYKGGYDF 231

Query: 276 LIGTSEHGDIVNSSDL--TLP-TFRHLLIAF 303
           ++  +     + S +L  +LP +FRH ++  
Sbjct: 232 VVQINSQTSAITSKELEASLPSSFRHAVLVL 262

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P53336|YG5X_YEAST Uncharacterized protein YGR283C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGR283C PE=1 SV=1

 Score = 72.8 bits (177), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 25/208 (12%)

Query: 64  SVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRSNR 123
           S+ +P ++IDN  +LE  T  A QIAR   +F + E++V D        S+     + +R
Sbjct: 41  SICIPTTVIDNCNNLEQVTFTAYQIARTAVLFNVQEIIVLDQ-------SKDKKHEKKSR 93

Query: 124 SDENESGAAFLVRLLQYLETPQYLRKALFSMHSS--LRFVGMLPPLDAPHHLRKHEWAPF 181
           S E  S    L  LLQY  TP  L    F   +   L+     PPL+    +       +
Sbjct: 94  SKETISDCLLLATLLQYFVTPPNLLDTTFKKKNKLYLKCASTFPPLNQLPFMNASAEQHY 153

Query: 182 REGVTL-----KENAPNSVGTLVDVGLNKHVVV-DQVLDPGVRVTVAMGTNRNLDADSPR 235
           +EG+++     K  + +++  LV +G N+ + + +Q +    RVTV          D+ R
Sbjct: 154 KEGLSIARDSSKGKSDDALTNLVYIGKNQIITLSNQNIPNTARVTV----------DTER 203

Query: 236 QVVPPSKPKESGMYWGYKVRYAPNISSV 263
           + V        G   GY VR A  ++ V
Sbjct: 204 KEVVSPIDAYKGKPLGYHVRMASTLNEV 231

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q06847|Y1688_HALSA Uncharacterized protein VNG_1688C OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=VNG_1688C PE=4 SV=2

 Score = 68.2 bits (165), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 52/106 (49%), Gaps = 17/106 (16%)

Query: 62  TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
           T SV VP S++   +    ATR  G +ARA  +FRID VVVF ++               
Sbjct: 2   TRSVLVPSSLVREAEDKREATRKLGYVARAAAVFRIDRVVVFPDEDG------------- 48

Query: 122 NRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPL 167
               E + G  F+  +L+Y  TP YLRK  F     L + G+LPPL
Sbjct: 49  ----ERQWGGGFVETVLRYAATPPYLRKEAFDTRDELAYAGVLPPL 90

Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) (taxid: 64091)

>sp|Q04867|YM91_YEAST Uncharacterized protein YMR310C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR310C PE=1 SV=1

 Score = 65.5 bits (158), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 118/276 (42%), Gaps = 44/276 (15%)

Query: 64  SVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRSNR 123
           S+ +P +++ + ++L   T    Q+A+  ++F + EVV+ ++ S  D             
Sbjct: 21  SLCIPTTLVSDCRNLSQITHKVYQVAKFASLFNVSEVVILEDNSQVDA------------ 68

Query: 124 SDENESGAAFLVRLLQYLETPQYLRKALFS--MHSSLRFVGMLPPLDAPHHLR--KHEWA 179
           + +  S A  ++ LLQY  TP YLR  +F+      L     LP L      R  K +  
Sbjct: 69  TKKKISTAKLILALLQYFVTPPYLRNTVFNEKFRPYLTAASKLPRLSTLPFTRYQKQDHG 128

Query: 180 PFREGVTLKENAPN----SVGTL------VDVGLNKHVVVDQVLDP-GVRVTVAMGTNRN 228
            +REG+T+K   P      +G +      +++G +K + +   L P   RVT+   T   
Sbjct: 129 RYREGLTIKMQKPTLARKKIGKVFKQTKYINIGKSKALALQSQLVPINARVTIDTIT--- 185

Query: 229 LDADSPRQVVPPSKP--KESGM--YWGYKVRYAPNISSVFKNCSYKGGYDHLIG---TSE 281
                 R++V P +     +G+   +GY  R A + + +F     K GY   +    T+ 
Sbjct: 186 ------RKIVSPQEAYGDFTGLDSQYGYYTRIASSFTDLFMKGPLKEGYTQSVYVPLTTR 239

Query: 282 HGDIVNSSDL-TLPTFRHLLIAFGGLAGLEESIEED 316
              I   S L T  T  H+L+ F     L  + + D
Sbjct: 240 DTSIPELSSLPTAETNPHILLVFSTWDTLARAFKLD 275

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P20571|Y1612_HALMA Uncharacterized protein rrnAC1612 OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rrnAC1612 PE=4 SV=2

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 32/184 (17%)

Query: 62  TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
           T SV VP S+    +    ATR  G +ARA  ++R+D + V+ +   +  +         
Sbjct: 2   TTSVLVPSSLAREAEDRREATRKLGYVARAAAVYRVDRLTVYPDPDGAGKW--------- 52

Query: 122 NRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPF 181
                 E G  F+  +L+Y  TP +LRK ++     L +VG+LPPL     +R    +  
Sbjct: 53  ------EDG--FVETVLRYAATPPHLRKEMWGKRDELEYVGVLPPL----RVRSQTGSGS 100

Query: 182 REGVTLKENAPNSVG----TLVDVGLNKHVVV----DQVLDPGVRVTVAMGTNRNLDA-- 231
               +L++     VG      V+ G+   + +    D  ++ G RVTV + + R + A  
Sbjct: 101 EGSGSLRQGIVTEVGADGRVRVNCGMQHPISLPVPADMDVEQGERVTVRVSSRRPVRAKL 160

Query: 232 -DSP 234
            D+P
Sbjct: 161 VDAP 164

Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (taxid: 272569)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
255552315	369	Protein C9orf114, putative [Ricinus comm	0.981	0.880	0.688	1e-122
224099761	366	predicted protein [Populus trichocarpa]	0.945	0.855	0.700	1e-121
147790065	363	hypothetical protein VITISV_012192 [Viti	0.948	0.865	0.675	1e-118
225432580	363	PREDICTED: uncharacterized protein C9orf	0.948	0.865	0.672	1e-118
359477498	359	PREDICTED: uncharacterized protein C9orf	0.936	0.863	0.660	1e-115
449432714	367	PREDICTED: uncharacterized protein C9orf	0.954	0.861	0.638	1e-114
449520559	368	PREDICTED: uncharacterized protein C9orf	0.954	0.858	0.636	1e-114
224111238	338	predicted protein [Populus trichocarpa]	0.806	0.789	0.736	1e-111
356575809	353	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.800	0.750	0.713	1e-109
255648220	307	unknown [Glycine max]	0.767	0.827	0.735	1e-109

>gi|255552315|ref|XP_002517202.1| Protein C9orf114, putative [Ricinus communis] gi|223543837|gb|EEF45365.1| Protein C9orf114, putative [Ricinus communis]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/334 (68%), Positives = 271/334 (81%), Gaps = 9/334 (2%)

Query: 1   MGNKKKRGGLEPELKEAATGENHESQNELSLANGDSSSCDNKKKKKRKRDQLNDDAPI-- 58
           MG KKKR   E +  E  T ENHE  N++ + NGDS     KKKK+++R++   +     
Sbjct: 1   MGKKKKRAEAEAQ-TETETVENHEPVNDV-VVNGDSDRKKKKKKKEKERNERKKEENESK 58

Query: 59  EVPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAA 118
           E  T+S+AVPGSIIDN QSLELATRLAGQIARA TIFRIDEVVVFDN+SSS    R++  
Sbjct: 59  ETATISIAVPGSIIDNAQSLELATRLAGQIARAATIFRIDEVVVFDNESSSVKEDRTTMI 118

Query: 119 NRSNRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEW 178
              N SDENESGAAFL+R+L+YLETPQYLRKALF   +SLRFVG+LPPLDAPHHLRKHEW
Sbjct: 119 T-GNNSDENESGAAFLIRILRYLETPQYLRKALFPRLNSLRFVGLLPPLDAPHHLRKHEW 177

Query: 179 APFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPRQVV 238
           APFREGVTLKE APNS+GTLVDVGL+K+VV+DQV++PG+RVTV MGT+RNLD++ PRQVV
Sbjct: 178 APFREGVTLKEKAPNSIGTLVDVGLSKNVVIDQVVEPGIRVTVEMGTDRNLDSELPRQVV 237

Query: 239 PPSKPK-ESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFR 297
             SKP+ E+GMYWGY+VRYA NIS+VF +C YKGGYDHL+GTSEHG I+N+S L+LPTFR
Sbjct: 238 SLSKPREEAGMYWGYRVRYASNISTVFNDCPYKGGYDHLVGTSEHGQIINASKLSLPTFR 297

Query: 298 HLLIAFGGLAGLEESIEEDDGLK---VHYLLKSY 328
           HLLIAFGGLAGLEESIEED+ LK   V  +  SY
Sbjct: 298 HLLIAFGGLAGLEESIEEDNSLKGKNVREVFNSY 331

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099761|ref|XP_002311607.1| predicted protein [Populus trichocarpa] gi|222851427|gb|EEE88974.1| predicted protein [Populus trichocarpa]

 Score =  439 bits (1130), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/324 (70%), Positives = 260/324 (80%), Gaps = 11/324 (3%)

Query: 1   MGNKKKRGGLEPELKEAATGENHESQNELSLANGDSSSCDNKKKKKRKRDQLNDDAPI-- 58
           MG K+K+   E    +A   EN +++NEL L NGDS     KKK K + +  +D   I  
Sbjct: 1   MGKKQKKAEAE---TDAERVENDKAENELELTNGDSHKKKKKKKNKERNE--SDKEVIKA 55

Query: 59  -EVPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSA 117
            E+PTVSVA+ GSII+N QSLELATRLAGQIARA TIFRIDEVVVFDNKS+ +   R+  
Sbjct: 56  KEIPTVSVAISGSIINNAQSLELATRLAGQIARAATIFRIDEVVVFDNKSNYEKEDRTLT 115

Query: 118 ANRSNRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHE 177
            +  N SDENESGAAF VR+L+YLETPQYLRKALF  H +LRFVGMLPPLDAPHHLRKHE
Sbjct: 116 TD--NYSDENESGAAFFVRILRYLETPQYLRKALFPKHCNLRFVGMLPPLDAPHHLRKHE 173

Query: 178 WAPFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPRQV 237
           WAPFREGVTL E  PNS  TLVDVGL+K+V ++QVL+PG+RVTVAMGTNRNLD+DSPRQV
Sbjct: 174 WAPFREGVTLNEKVPNSGETLVDVGLSKNVSINQVLEPGIRVTVAMGTNRNLDSDSPRQV 233

Query: 238 VPPSKPK-ESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTF 296
           V   KP+ E+GMYWGY+VRYA NISSVFK+C YKGGYDHLIGTSEHG I+NSS+L+LP F
Sbjct: 234 VSLLKPREEAGMYWGYRVRYASNISSVFKDCPYKGGYDHLIGTSEHGLIINSSELSLPAF 293

Query: 297 RHLLIAFGGLAGLEESIEEDDGLK 320
           RHLLIAFGGLAGLEE IEED  LK
Sbjct: 294 RHLLIAFGGLAGLEECIEEDSNLK 317

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790065|emb|CAN75987.1| hypothetical protein VITISV_012192 [Vitis vinifera]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/333 (67%), Positives = 258/333 (77%), Gaps = 19/333 (5%)

Query: 1   MGNKKKR-GGLEPELKEAATGENHESQNELSLANGDSSSCDNKKKKKRKRDQLNDDAPIE 59
           MG KKKR    E E       EN+ ++NE  L NGDS S   K K  + + Q  D     
Sbjct: 1   MGKKKKRRSDFEAET------ENNTAENETELINGDSRSKKKKNKTHKDKYQATD----- 49

Query: 60  VPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAAN 119
           +PT+++AVPGSII N QSLELATRLAGQ+ARA TIFRIDEVVVFD KS+S +   +S   
Sbjct: 50  IPTLTIAVPGSIIHNAQSLELATRLAGQVARAATIFRIDEVVVFDCKSTSGD---NSTVA 106

Query: 120 RSNRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWA 179
             + SDENE+GAAFL+R+L+YLETPQYLRK LF  H+SL+FVGMLPPLDAPHHLRKHEW 
Sbjct: 107 TPDASDENETGAAFLIRILRYLETPQYLRKILFPKHNSLKFVGMLPPLDAPHHLRKHEWG 166

Query: 180 PFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPRQVVP 239
           P+REGVTLKE AP+SVGTLVDVGLNK+VV+DQVL+PG+RVTVAMGTNRNLDAD   QVV 
Sbjct: 167 PYREGVTLKERAPSSVGTLVDVGLNKNVVIDQVLEPGIRVTVAMGTNRNLDADFVHQVVS 226

Query: 240 PSKPKES-GMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRH 298
            SKP+E  G YWGYKVRYA NISSVFK C +KGGYDHLIGTSEHG IV SS+L +P+FRH
Sbjct: 227 SSKPREEVGTYWGYKVRYASNISSVFKECPFKGGYDHLIGTSEHGLIVKSSELDIPSFRH 286

Query: 299 LLIAFGGLAGLEESIEEDDGLK---VHYLLKSY 328
           LLIAFGGLAGLEES+EED  LK   V  +  SY
Sbjct: 287 LLIAFGGLAGLEESVEEDHSLKGKNVREIFDSY 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432580|ref|XP_002277845.1| PREDICTED: uncharacterized protein C9orf114 isoform 1 [Vitis vinifera] gi|297737011|emb|CBI26212.3| unnamed protein product [Vitis vinifera]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/333 (67%), Positives = 257/333 (77%), Gaps = 19/333 (5%)

Query: 1   MGNKKKR-GGLEPELKEAATGENHESQNELSLANGDSSSCDNKKKKKRKRDQLNDDAPIE 59
           MG KKKR    E E       EN+ ++NE  L NGDS S   K K  + + Q  D     
Sbjct: 1   MGKKKKRRSDFEAET------ENNTAENETELINGDSRSKKKKNKTHKDKYQATD----- 49

Query: 60  VPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAAN 119
           +PT+++AVPGSII N QSLELATRLAGQIARA TIFRIDEVVVFD KS+S +    S   
Sbjct: 50  IPTLTIAVPGSIIHNAQSLELATRLAGQIARAATIFRIDEVVVFDCKSTSGD---DSTVA 106

Query: 120 RSNRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWA 179
             + SDENE+G AFL+R+L+YLETPQYLRK LF  H+SL+FVGMLPP+DAPHHLRKHEW 
Sbjct: 107 TPDASDENETGPAFLIRILRYLETPQYLRKTLFPKHNSLKFVGMLPPVDAPHHLRKHEWG 166

Query: 180 PFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPRQVVP 239
           P+REGVTLKE AP+SVGTLVDVGLNK+VV+DQVL+PG+RVTVAMGTNRNLDAD   QVV 
Sbjct: 167 PYREGVTLKERAPSSVGTLVDVGLNKNVVIDQVLEPGIRVTVAMGTNRNLDADFVHQVVS 226

Query: 240 PSKPKES-GMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRH 298
            SKP+E  G YWGYKVRYA NISSVFK C +KGGYDHLIGTSEHG IV SS+L +P+FRH
Sbjct: 227 SSKPREEVGTYWGYKVRYASNISSVFKECPFKGGYDHLIGTSEHGLIVKSSELDIPSFRH 286

Query: 299 LLIAFGGLAGLEESIEEDDGLK---VHYLLKSY 328
           LLIAFGGLAGLEES+EED+ LK   V  +  SY
Sbjct: 287 LLIAFGGLAGLEESVEEDNSLKGKNVREIFDSY 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477498|ref|XP_003631986.1| PREDICTED: uncharacterized protein C9orf114 isoform 2 [Vitis vinifera]

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/333 (66%), Positives = 251/333 (75%), Gaps = 23/333 (6%)

Query: 1   MGNKKKR-GGLEPELKEAATGENHESQNELSLANGDSSSCDNKKKKKRKRDQLNDDAPIE 59
           MG KKKR    E E       EN+ ++NE  L NGDS S   K K  + + Q  D     
Sbjct: 1   MGKKKKRRSDFEAET------ENNTAENETELINGDSRSKKKKNKTHKDKYQATD----- 49

Query: 60  VPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAAN 119
           +PT+++AVPGSII N QSLELATRLAGQIARA TIFRIDEV +  N S S          
Sbjct: 50  IPTLTIAVPGSIIHNAQSLELATRLAGQIARAATIFRIDEVCIVMNSSRSVEL------- 102

Query: 120 RSNRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWA 179
             N SDENE+G AFL+R+L+YLETPQYLRK LF  H+SL+FVGMLPP+DAPHHLRKHEW 
Sbjct: 103 LINASDENETGPAFLIRILRYLETPQYLRKTLFPKHNSLKFVGMLPPVDAPHHLRKHEWG 162

Query: 180 PFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPRQVVP 239
           P+REGVTLKE AP+SVGTLVDVGLNK+VV+DQVL+PG+RVTVAMGTNRNLDAD   QVV 
Sbjct: 163 PYREGVTLKERAPSSVGTLVDVGLNKNVVIDQVLEPGIRVTVAMGTNRNLDADFVHQVVS 222

Query: 240 PSKPKES-GMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRH 298
            SKP+E  G YWGYKVRYA NISSVFK C +KGGYDHLIGTSEHG IV SS+L +P+FRH
Sbjct: 223 SSKPREEVGTYWGYKVRYASNISSVFKECPFKGGYDHLIGTSEHGLIVKSSELDIPSFRH 282

Query: 299 LLIAFGGLAGLEESIEEDDGLK---VHYLLKSY 328
           LLIAFGGLAGLEES+EED+ LK   V  +  SY
Sbjct: 283 LLIAFGGLAGLEESVEEDNSLKGKNVREIFDSY 315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432714|ref|XP_004134144.1| PREDICTED: uncharacterized protein C9orf114 homolog [Cucumis sativus]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/340 (63%), Positives = 256/340 (75%), Gaps = 24/340 (7%)

Query: 1   MGNKKKRGGLEPELK-EAATGENHESQNELSLANGDS--------SSCDNKKKKKRKRDQ 51
           MG KK +    PE + EA   ++ E+ +E  L NG S           +N   +  KR  
Sbjct: 1   MGKKKHK---RPEQESEALDRDDFEANHETELINGCSPEKKKKKKKKVENGSIEAEKRK- 56

Query: 52  LNDDAPIEVPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDN 111
                PI  PTVS+AV GSIIDN QSLELATRLAGQIARA TIFRI+EVVVFD+  SS  
Sbjct: 57  -----PISKPTVSIAVSGSIIDNAQSLELATRLAGQIARAATIFRINEVVVFDSGRSSTT 111

Query: 112 YSRSSAANRSNRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPH 171
            S  +AAN S   DE+ESGAAFL+R+L+YLETPQYLRKALF  H++LRFVGMLPPLDAPH
Sbjct: 112 GSEVAAANNS---DEDESGAAFLIRILKYLETPQYLRKALFPKHNNLRFVGMLPPLDAPH 168

Query: 172 HLRKHEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDA 231
           HLRKHEW P+REGVTLKE AP++ GT VDVGL+K+VVVD++L+PG RVTVAMGT+RNL +
Sbjct: 169 HLRKHEWGPYREGVTLKERAPDAKGTSVDVGLSKNVVVDEILEPGTRVTVAMGTDRNLFS 228

Query: 232 DSPRQVVPPSKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDL 291
           D PRQVV  SKP E G+YWGY+VRYA ++S+VFK  SY+GGYDHLIGTSEHG ++ SS+L
Sbjct: 229 DLPRQVVSSSKPVEEGLYWGYRVRYASSLSAVFKESSYEGGYDHLIGTSEHGMVIKSSEL 288

Query: 292 TLPTFRHLLIAFGGLAGLEESIEEDDGLK---VHYLLKSY 328
           TLP FRHLLIAFGGLAGLEESIEED+  K    H +  SY
Sbjct: 289 TLPPFRHLLIAFGGLAGLEESIEEDNNFKSKNAHEIFSSY 328

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520559|ref|XP_004167301.1| PREDICTED: uncharacterized protein C9orf114 homolog [Cucumis sativus]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/341 (63%), Positives = 256/341 (75%), Gaps = 25/341 (7%)

Query: 1   MGNKKKRGGLEPELK-EAATGENHESQNELSLANGDS---------SSCDNKKKKKRKRD 50
           MG KK +    PE + EA   ++ E+ +E  L NG S            +N   +  KR 
Sbjct: 1   MGKKKHK---RPEQESEALDRDDFEANHETELINGCSPEKKKKKKKKKVENGSIEAEKRK 57

Query: 51  QLNDDAPIEVPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSD 110
                 PI  PTVS+AV GSIIDN QSLELATRLAGQIARA TIFRI+EVVVFD+  SS 
Sbjct: 58  ------PISKPTVSIAVSGSIIDNAQSLELATRLAGQIARAATIFRINEVVVFDSGRSST 111

Query: 111 NYSRSSAANRSNRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAP 170
             S  +AAN S   DE+ESGAAFL+R+L+YLETPQYLRKALF  H++LRFVGMLPPLDAP
Sbjct: 112 TGSEVAAANNS---DEDESGAAFLIRILKYLETPQYLRKALFPKHNNLRFVGMLPPLDAP 168

Query: 171 HHLRKHEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLD 230
           HHLRKHEW P+REGVTLKE AP++ GT VDVGL+K+VVVD++L+PG RVTVAMGT+RNL 
Sbjct: 169 HHLRKHEWGPYREGVTLKERAPDAKGTSVDVGLSKNVVVDEILEPGTRVTVAMGTDRNLF 228

Query: 231 ADSPRQVVPPSKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSD 290
           +D PRQVV  SKP E G+YWGY+VRYA ++S+VFK  SY+GGYDHLIGTSEHG ++ SS+
Sbjct: 229 SDLPRQVVSSSKPVEEGLYWGYRVRYASSLSAVFKESSYEGGYDHLIGTSEHGMVIKSSE 288

Query: 291 LTLPTFRHLLIAFGGLAGLEESIEEDDGLK---VHYLLKSY 328
           LTLP FRHLLIAFGGLAGLEESIEED+  K    H +  SY
Sbjct: 289 LTLPPFRHLLIAFGGLAGLEESIEEDNNFKSKNAHEIFSSY 329

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111238|ref|XP_002315789.1| predicted protein [Populus trichocarpa] gi|222864829|gb|EEF01960.1| predicted protein [Populus trichocarpa]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/269 (73%), Positives = 225/269 (83%), Gaps = 2/269 (0%)

Query: 54  DDAPIEVPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEV-VVFDNKSSSDNY 112
           D    E+PTVS+AV GSII+N QSLELATRLAGQIARA TIFRIDEV ++  N  +S + 
Sbjct: 28  DKEAKEIPTVSIAVSGSIINNAQSLELATRLAGQIARAATIFRIDEVSILIFNGFTSSSE 87

Query: 113 SRSSAANRSNRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHH 172
                   +N SDENESG AF +R+L+YLETPQYLRKALF  H++LRFVGMLPPLDAPHH
Sbjct: 88  KEDPTVTTNNNSDENESGGAFFIRILRYLETPQYLRKALFPKHNNLRFVGMLPPLDAPHH 147

Query: 173 LRKHEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDAD 232
           LRKHEWAPFREGVTL E   NS  TLVDVGL+K+VVV+Q L+PG+RVTVAMGTNRNLD D
Sbjct: 148 LRKHEWAPFREGVTLNEKVSNSGETLVDVGLSKNVVVNQALEPGIRVTVAMGTNRNLDDD 207

Query: 233 SPRQVVPPSKPK-ESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDL 291
           SPRQVV  SKP+ E+G+YWGY+VRYA NISSVFK+C Y+GGYD LIGTSEHG I+NSS+L
Sbjct: 208 SPRQVVSLSKPREEAGLYWGYRVRYASNISSVFKDCPYRGGYDLLIGTSEHGLIINSSEL 267

Query: 292 TLPTFRHLLIAFGGLAGLEESIEEDDGLK 320
           +LPTFRHLLIAFGGLAGLEESIEED  LK
Sbjct: 268 SLPTFRHLLIAFGGLAGLEESIEEDSNLK 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575809|ref|XP_003556029.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein C9orf114-like [Glycine max]

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/272 (71%), Positives = 225/272 (82%), Gaps = 7/272 (2%)

Query: 60  VPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAAN 119
           +PTVS+AVP SIIDN  +LELATRLAGQIARA TIFRI+EVVVFDNKS+ DN S      
Sbjct: 43  IPTVSIAVPASIIDNVPTLELATRLAGQIARAATIFRINEVVVFDNKSNPDNDSVLDNVG 102

Query: 120 RSNRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWA 179
                  +ESGAAFL+R+LQYLETPQYLRKALF MH+SLRFVG+LPPLDAPHHLRKHEW 
Sbjct: 103 -------DESGAAFLMRILQYLETPQYLRKALFPMHNSLRFVGLLPPLDAPHHLRKHEWF 155

Query: 180 PFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPRQVVP 239
           P+REGVT+KE   NS  TLVDVGL K+V+VDQ+ +PG RVTVAMGT+RNLD+D PRQV+ 
Sbjct: 156 PYREGVTVKERDSNSGATLVDVGLVKNVIVDQIFEPGRRVTVAMGTDRNLDSDLPRQVIS 215

Query: 240 PSKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHL 299
            SKP+E G YWGY+VRYA NIS+VFK+C+YK GYD +IGTSEHG I+ SSDL +P+FRHL
Sbjct: 216 SSKPREEGTYWGYQVRYAHNISAVFKDCAYKRGYDFIIGTSEHGQIIKSSDLEIPSFRHL 275

Query: 300 LIAFGGLAGLEESIEEDDGLKVHYLLKSYSLY 331
           LIAFGGLAGLEESIEEDD LK      +++LY
Sbjct: 276 LIAFGGLAGLEESIEEDDNLKGKKAQDAFNLY 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255648220|gb|ACU24563.1| unknown [Glycine max]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/261 (73%), Positives = 220/261 (84%), Gaps = 7/261 (2%)

Query: 60  VPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAAN 119
           +PTVS+AVP SIIDN  +LELATRLAGQIARA TIFRI+EVVVFDNKS+ DN S      
Sbjct: 43  IPTVSIAVPASIIDNVPTLELATRLAGQIARAATIFRINEVVVFDNKSNPDNDSVLDNVG 102

Query: 120 RSNRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWA 179
                  +ESGAAFL+R+LQYLETPQYLRKALF MH+SLRFVG+LPPLDAPHHLRKHEW 
Sbjct: 103 -------DESGAAFLMRILQYLETPQYLRKALFPMHNSLRFVGLLPPLDAPHHLRKHEWF 155

Query: 180 PFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPRQVVP 239
           P+REGVT+KE   NS  TLVDVGL K+V+VDQ+ +PG RVTVAMGT+RNLD+D PRQV+ 
Sbjct: 156 PYREGVTVKERDSNSGATLVDVGLVKNVIVDQIFEPGRRVTVAMGTDRNLDSDLPRQVIS 215

Query: 240 PSKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHL 299
            SKP+E G YWGY+VRYA NIS+VFK+C+YK GYD +IGTSEHG I+ SSDL +P+FRHL
Sbjct: 216 SSKPREEGTYWGYQVRYAHNISAVFKDCAYKRGYDFIIGTSEHGQIIKSSDLEIPSFRHL 275

Query: 300 LIAFGGLAGLEESIEEDDGLK 320
           LIAFGGLAGLEESIEEDD LK
Sbjct: 276 LIAFGGLAGLEESIEEDDNLK 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
TAIR|locus:2150255	398	AT5G19300 "AT5G19300" [Arabido	0.969	0.806	0.592	7.6e-99
ZFIN|ZDB-GENE-040912-53	381	zgc:101748 "zgc:101748" [Danio	0.797	0.692	0.463	9.6e-57
MGI|MGI:106544	385	D2Wsu81e "DNA segment, Chr 2,	0.767	0.659	0.461	2.1e-54
UNIPROTKB|Q5T280	376	C9orf114 "Uncharacterized prot	0.797	0.702	0.441	3e-53
FB|FBgn0033473	485	CG12128 [Drosophila melanogast	0.782	0.534	0.420	2.5e-49
GENEDB_PFALCIPARUM|PF14_0307	444	PF14_0307 "hypothetical protei	0.528	0.394	0.414	4.5e-38
UNIPROTKB|Q8ILD7	444	PF14_0307 "Putative uncharacte	0.528	0.394	0.414	4.5e-38
WB|WBGene00015160	378	B0361.6 [Caenorhabditis elegan	0.758	0.664	0.344	4.9e-37
RGD|1563514	242	LOC499770 "similar to LOC49580	0.528	0.723	0.446	2.7e-36
DICTYBASE|DDB_G0286505	467	DDB_G0286505 "DUF171 family pr	0.688	0.488	0.283	8.5e-25

TAIR|locus:2150255 AT5G19300 "AT5G19300" [Arabidopsis thaliana (taxid:3702)]

 Score = 957 (341.9 bits), Expect = 7.6e-99, Sum P(2) = 7.6e-99
 Identities = 199/336 (59%), Positives = 241/336 (71%)

Query:     3 NKKKRGG----LEPELKEAATGENHESQNELSLANGDSSSCDNXXXXXXXXDQLNDDAPI 58
             NKKKR      +EPE K +  G++ E + +    N +    +          Q  +   +
Sbjct:    35 NKKKRSHEDTEIEPEQKMSLDGDSKEEKIKKKRKNKNQEE-EPELVTEKTKVQEEEKGNV 93

Query:    59 EV--PTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKXXXXXXXXXX 116
             E    TVS+A+ GSII NTQSLELATRLAGQIARA TIFRIDE+VVFDNK          
Sbjct:    94 EEGRATVSIAIAGSIIHNTQSLELATRLAGQIARAATIFRIDEIVVFDNKSSSEIESAAT 153

Query:   117 XXXXXXXXXENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKH 176
                       NESGA+FLVR+L+YLETPQYLRK+LF   + LR+VGMLPPLDAPHHLRKH
Sbjct:   154 NASDS-----NESGASFLVRILKYLETPQYLRKSLFPKQNDLRYVGMLPPLDAPHHLRKH 208

Query:   177 EWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPRQ 236
             EW  +REGVTL E APNS GTLVDVGL+K VVVDQVL PG+RVTVAMGT+ +LD    RQ
Sbjct:   209 EWEQYREGVTLSEKAPNSEGTLVDVGLSKSVVVDQVLGPGIRVTVAMGTDHDLDL--VRQ 266

Query:   237 VVPPSKPKE-SGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPT 295
             +VPPSKP+E +GMYWGYKVRYA  +SSVFK C ++GGYD+LIGTSEHG +++SS+L +PT
Sbjct:   267 IVPPSKPREEAGMYWGYKVRYASQLSSVFKECPFEGGYDYLIGTSEHGLVISSSELKIPT 326

Query:   296 FRHLLIAFGGLAGLEESIEEDDGLKVHYLLKSYSLY 331
             FRHLLIAFGGLAGLEESIE+D+  K   +   +++Y
Sbjct:   327 FRHLLIAFGGLAGLEESIEDDNQYKGKNVRDVFNVY 362

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000741 "karyogamy" evidence=RCA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009561 "megagametogenesis" evidence=RCA

ZFIN|ZDB-GENE-040912-53 zgc:101748 "zgc:101748" [Danio rerio (taxid:7955)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 126/272 (46%), Positives = 162/272 (59%)

Query:    62 TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKXXXXXXXXXXXXXXX 121
             TVSVA+PGS++DN QS EL T LAGQIARA  +F +DEVV+FD                 
Sbjct:    77 TVSVALPGSVMDNAQSPELRTYLAGQIARACAVFCVDEVVIFDE----LGEDAKSVEGEF 132

Query:   122 XXXXENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPF 181
                 +       L R+LQYLE PQYLRK  F  H  L+F G+L PLD+PHH+R  E A F
Sbjct:   133 KGVGKKGQSCVQLARILQYLECPQYLRKFFFPKHQDLQFAGLLNPLDSPHHMRIDEEAEF 192

Query:   182 REGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPRQVV-PP 240
             REGV L        G+ V+ G+ K V +D+ L  G+RVTV +  ++N D    + VV  P
Sbjct:   193 REGVVLDRPVKAGKGSFVNCGMRKEVQIDKQLKTGLRVTVQLNESQNKDGRVYKGVVVAP 252

Query:   241 SKPK-ESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHL 299
               P+ E+G+YWGY VR A  +S+VF  C YK GYD  IGTSE G   N+  +TLP FRH+
Sbjct:   253 HIPRTEAGLYWGYSVRLASCLSAVFSECPYKEGYDLTIGTSEKGQ--NTDHVTLPAFRHM 310

Query:   300 LIAFGGLAGLEESIEEDDGLKVHYLLKSYSLY 331
             L+ FGGL GLE S++ D+ L +      + LY
Sbjct:   311 LVVFGGLQGLEASVDADENLTISDPSVLFDLY 342

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:106544 D2Wsu81e "DNA segment, Chr 2, Wayne State University 81, expressed" [Mus musculus (taxid:10090)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 121/262 (46%), Positives = 163/262 (62%)

Query:    62 TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKXXXXXXXXXXXXXXX 121
             T+SVA+PGSI+DN QS EL T LAGQIARA TIF +DE+VVFD +               
Sbjct:    75 TLSVALPGSILDNAQSPELRTYLAGQIARACTIFCVDEIVVFDEEGQDTKSVEGEFRGVG 134

Query:   122 XXXXENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPF 181
                 +       L R+LQYLE PQYLRKA F  H  L+F G+L PLD+PHH+R+ E + F
Sbjct:   135 ----KKGQACVQLARILQYLECPQYLRKAFFPKHQDLQFAGILNPLDSPHHMRQDEESEF 190

Query:   182 REGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPRQVVPPS 241
             REGV +        G+LV+ G+ K V +D+ LDPG+RVTV +   +  +  + +  V  S
Sbjct:   191 REGVVVDRPTKAGHGSLVNCGMKKEVKIDKKLDPGLRVTVRLNQQQLPECKTYKGTVVSS 250

Query:   242 K-PK-ESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHL 299
             + P+ ++G+YWGY VR A  +S+VF    ++ GYD  IGTSE G  V S+ L  P+FRH 
Sbjct:   251 QDPRTKAGLYWGYTVRLASCLSAVFAEAPFQDGYDLTIGTSERGSDVASAQL--PSFRHA 308

Query:   300 LIAFGGLAGLEESIEEDDGLKV 321
             L+ FGGL GLE +++ D  L+V
Sbjct:   309 LVVFGGLQGLEAAVDADPNLEV 330

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5T280 C9orf114 "Uncharacterized protein C9orf114" [Homo sapiens (taxid:9606)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 120/272 (44%), Positives = 161/272 (59%)

Query:    62 TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKXXXXXXXXXXXXXXX 121
             T+SVA+PGSI+DN QS EL T LAGQIARA  IF +DE+VVFD +               
Sbjct:    74 TLSVALPGSILDNAQSPELRTYLAGQIARACAIFCVDEIVVFDEEGQDAKTVEGEFTGVG 133

Query:   122 XXXXENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPF 181
                 +       L R+LQYLE PQYLRKA F  H  L+F G+L PLD+PHH+R+ E + F
Sbjct:   134 ----KKGQACVQLARILQYLECPQYLRKAFFPKHQDLQFAGLLNPLDSPHHMRQDEESEF 189

Query:   182 REGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPR-QVVPP 240
             REG+ +        G+ V+ G+ K V +D+ L+PG+RVTV +   ++ D  +   +VV  
Sbjct:   190 REGIVVDRPTRPGHGSFVNCGMKKEVKIDKNLEPGLRVTVRLNQQQHPDCKTYHGKVVSS 249

Query:   241 SKPK-ESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHL 299
               P+ ++G+YWGY VR A  +S+VF    ++ GYD  IGTSE G  V S+ L  P FRH 
Sbjct:   250 QDPRTKAGLYWGYTVRLASCLSAVFAEAPFQDGYDLTIGTSERGSDVASAQL--PNFRHA 307

Query:   300 LIAFGGLAGLEESIEEDDGLKVHYLLKSYSLY 331
             L+ FGGL GLE   + D  L+V      + LY
Sbjct:   308 LVVFGGLQGLEAGADADPNLEVAEPSVLFDLY 339

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0033473 CG12128 [Drosophila melanogaster (taxid:7227)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 111/264 (42%), Positives = 151/264 (57%)

Query:    62 TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKXXXXXXXXXXXXXXX 121
             T+S+AVPGSI++N QS EL   +AGQIARA  IFR++EV+VFD+                
Sbjct:    73 TLSIAVPGSILENAQSNELRAYVAGQIARAACIFRVNEVIVFDDVGIATARETKRSYEAD 132

Query:   122 XXXXEN---ESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEW 178
                       S +  L R+LQYLE PQYLRK  F +H  L++ G+L PLD PHHLR+   
Sbjct:   133 GEGSSTGTVRSSSLQLARILQYLECPQYLRKYFFPLHKDLKYSGLLNPLDTPHHLRQQSK 192

Query:   179 APFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPRQVV 238
               +REGV   + A     +  +VGL   V+VD+ ++PGVRVTV M             +V
Sbjct:   193 FRYREGVICDKKAKEG-HSYANVGLLNDVLVDKAIEPGVRVTVKMEPQSESCRKQRGTLV 251

Query:   239 PPSKPK-ESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFR 297
              P +P+ E+G+YWGY+VR A ++S +F    Y  GYD  +GTS+ G  V+        F 
Sbjct:   252 SPDEPRRETGVYWGYQVRIAHSMSEIFTKSPYATGYDVTVGTSDRGTNVHEVPNRSYNFN 311

Query:   298 HLLIAFGGLAGLEESIEEDDGLKV 321
             H+LI FGGL GLE ++  D+ L V
Sbjct:   312 HMLIVFGGLQGLESALANDEKLTV 335

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GENEDB_PFALCIPARUM|PF14_0307 PF14_0307 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 338 (124.0 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
 Identities = 80/193 (41%), Positives = 116/193 (60%)

Query:   138 LQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPFREGVTLKENAPNSVGT 197
             LQYLETPQYLRK LF + + L+  G++ P+DAPHHLR  EW PFREGV L+++   S G 
Sbjct:   207 LQYLETPQYLRKHLFPITNFLKNSGIMNPVDAPHHLRSDEWLPFREGVVLQKS---SNGI 263

Query:   198 LVDVGLNKHVVVDQV--LDPGVRVTVAMGTN-------RNLDADSPRQVVPPSKPKESGM 248
             +VDVGL  +V+++ V  ++ G RVTV   +N       +N +     +++ PS PK   +
Sbjct:   264 IVDVGLFSNVLIENVNYINIGTRVTVLFQSNSYELFQKKNPNVLFTGKLIHPSVPKLYNL 323

Query:   249 YWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHLLIAFGGLAG 308
             YWGY +    N+S +FK        D+LIGTSE G  ++ S ++    + +LI FG   G
Sbjct:   324 YWGYSIEILKNLSDIFKL-----QVDYLIGTSERGKFIDDSMVSFRDAKSVLIVFGNKDG 378

Query:   309 LEES-IEEDDGLK 320
             LE+  I+E +  K
Sbjct:   379 LEDLLIKEKEKKK 391

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8ILD7 PF14_0307 "Putative uncharacterized protein" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 338 (124.0 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
 Identities = 80/193 (41%), Positives = 116/193 (60%)

Query:   138 LQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPFREGVTLKENAPNSVGT 197
             LQYLETPQYLRK LF + + L+  G++ P+DAPHHLR  EW PFREGV L+++   S G 
Sbjct:   207 LQYLETPQYLRKHLFPITNFLKNSGIMNPVDAPHHLRSDEWLPFREGVVLQKS---SNGI 263

Query:   198 LVDVGLNKHVVVDQV--LDPGVRVTVAMGTN-------RNLDADSPRQVVPPSKPKESGM 248
             +VDVGL  +V+++ V  ++ G RVTV   +N       +N +     +++ PS PK   +
Sbjct:   264 IVDVGLFSNVLIENVNYINIGTRVTVLFQSNSYELFQKKNPNVLFTGKLIHPSVPKLYNL 323

Query:   249 YWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHLLIAFGGLAG 308
             YWGY +    N+S +FK        D+LIGTSE G  ++ S ++    + +LI FG   G
Sbjct:   324 YWGYSIEILKNLSDIFKL-----QVDYLIGTSERGKFIDDSMVSFRDAKSVLIVFGNKDG 378

Query:   309 LEES-IEEDDGLK 320
             LE+  I+E +  K
Sbjct:   379 LEDLLIKEKEKKK 391

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

WB|WBGene00015160 B0361.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 92/267 (34%), Positives = 142/267 (53%)

Query:    62 TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKXXXXXXXXXXXXXXX 121
             T+S+AVPG  ++N QS EL T +AGQIARA T++R+DE++++D                 
Sbjct:    67 TISIAVPGQFLNNAQSAELRTYMAGQIARAATLYRVDEIIIYDESCRMTDEAVNAYYNGT 126

Query:   122 XX-----XXENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKH 176
                       N  G  +L ++L+YLE PQYLRK LF +   L+  G+L PLDA HHL+  
Sbjct:   127 WQGNLIPAETNYEGCFYLAKILEYLECPQYLRKDLFPIQKPLKNAGLLNPLDAQHHLKYD 186

Query:   177 EWA-PFREGVTLKENAPNSVGTLVDVGLNKHVVVDQ---VLDPGVRVTVAMGTNRNLDAD 232
             E    FREGV LK+ + +  G + ++GL K   +D     L P  RVTV +  N      
Sbjct:   187 EKTLRFREGVVLKKRSKDGRGPICNIGLEKEFEIDSDAVQLPPYTRVTVEI-KNLTEQCK 245

Query:   233 SPRQVVPPSKP--KESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSD 290
               R  +       +E+G+YWGY VR    +  V +  + K  +D + G S  G + +  D
Sbjct:   246 LYRGSITSGATVTRETGLYWGYSVRLMTGLQKVLQ--AKK--FDIVAGVSPRGKLASQMD 301

Query:   291 LTLPTFRHLLIAFGGLAGLEESIEEDD 317
             + +     +L+ FGG+AG++ ++E ++
Sbjct:   302 VCILNKPKILLVFGGVAGVDAAVESEE 328

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

RGD|1563514 LOC499770 "similar to LOC495800 protein" [Rattus norvegicus (taxid:10116)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 80/179 (44%), Positives = 113/179 (63%)

Query:   145 QYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPFREGVTLKENAPNSVGTLVDVGLN 204
             +YLRKA F  H  L+F G+L PLD+PHH+R+ E + FREGV +        G+LV+ G+ 
Sbjct:    19 RYLRKAFFPKHQDLQFAGILNPLDSPHHMRQDEESEFREGVVVDRPTKAGHGSLVNCGMK 78

Query:   205 KHVVVDQVLDPGVRVTVAMGTNRNLDADSPRQVVPPSK-PK-ESGMYWGYKVRYAPNISS 262
             K V +D+ LDPG+RVTV +   +  +  + +  V  S+ P+ ++G+YWGY VR A  +S+
Sbjct:    79 KEVKIDKKLDPGLRVTVRLNQQQLPECKTYKGTVVSSQDPRTKAGLYWGYTVRLASCLSA 138

Query:   263 VFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHLLIAFGGLAGLEESIEEDDGLKV 321
             VF    ++ GYD  IGTSE G  V S+ L  P FRH L+ FGGL GLE  ++ D  L+V
Sbjct:   139 VFAEAPFQDGYDLTIGTSERGSSVASTQL--PNFRHALVVFGGLQGLEAGVDADPNLEV 195

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0286505 DDB_G0286505 "DUF171 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 264 (98.0 bits), Expect = 8.5e-25, Sum P(2) = 8.5e-25
 Identities = 75/265 (28%), Positives = 134/265 (50%)

Query:    62 TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKXXXXXXXXXXXXXXX 121
             TVS+A+P + +   QS E+ T +   I+R VT+ +IDE++VF                  
Sbjct:   161 TVSIAIPSNALSGIQSEEMKTYIIEMISRQVTMNKIDEIIVFKTDDYNEEDS-------- 212

Query:   122 XXXXENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRF-VGMLPPLDAPHHLRKHEWAP 180
                 + +S    L+++L+Y+ETP YLR  LF+      F V  L  +++    + ++   
Sbjct:   213 ----QQQSDLNLLLKVLEYIETPSYLRDELFNTLEKDYFNVDKLNSINSCQQQQPNDEQL 268

Query:   181 FREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLD-------ADS 233
             +REGV   ++  N   ++V+VGL K V++ + L+PG R+T+ +  + N D        D 
Sbjct:   269 YREGVVTNQHWKNQ--SIVNVGLEKLVLIPKRLNPGTRLTIDIKNSSNGDDDGTGGGGDG 326

Query:   234 PRQ---------VVPPSKPKESGMYWGYKVRYAPNISSVFKNCSYKG--GYDHLIGTSEH 282
              R+         ++ PS  K+ G YWG+ +R   +++ V   C Y+    YD++I  S++
Sbjct:   327 NRETNDKYINGKIISPSDIKKEGYYWGHHIRLVDSLAKVASTCQYEDTQNYDYIIMHSQY 386

Query:   283 GDIVNS-SDLTLPT---FRHLLIAF 303
             G+   S +D+ +     + HLL+ F
Sbjct:   387 GEQFPSYTDVVINNAKKYNHLLVIF 411

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	331
pfam02598	283	pfam02598, Methyltrn_RNA_3, Putative RNA methyltra	3e-99
COG2106	272	COG2106, COG2106, Uncharacterized conserved protei	8e-45

>gnl|CDD|217133 pfam02598, Methyltrn_RNA_3, Putative RNA methyltransferase

 Score =  293 bits (752), Expect = 3e-99
 Identities = 118/271 (43%), Positives = 166/271 (61%), Gaps = 18/271 (6%)

Query: 62  TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
           T+SVA+P SI+ N QSLE  T  AGQIARA TIFR+DE+V++D+ S     + SS     
Sbjct: 1   TLSVAIPTSILSNAQSLEQKTYKAGQIARAATIFRVDEIVIYDDSSEVQKENNSS----- 55

Query: 122 NRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHL-RKHEWAP 180
             S +N SGA FL  LLQYLETP YLRK++F +H  L++ G+LPPLDAPHH+ R  E   
Sbjct: 56  --SKKNRSGAKFLATLLQYLETPPYLRKSVFPIHPYLKYAGLLPPLDAPHHMSRSPEEGE 113

Query: 181 FREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPRQVVPP 240
           +REG+ ++ + P    + V++GL+K V +D ++ PG RVTV + + +        +VV P
Sbjct: 114 YREGLVIRMSKPGGKTSYVNIGLDKPVELDSLVPPGTRVTVRIKSQK-------GKVVSP 166

Query: 241 SKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDL---TLPTFR 297
           ++P   G+YWGYKVR A ++S VFK   +  GYD  IGTS  G  ++ ++L    +  F+
Sbjct: 167 AEPYGEGLYWGYKVRIASSLSDVFKKSPFPEGYDVTIGTSRRGKDISEAELEIKLMENFK 226

Query: 298 HLLIAFGGLAGLEESIEEDDGLKVHYLLKSY 328
           H+L+ FGG   L+ S E         L   Y
Sbjct: 227 HILLVFGGWEPLKGSDEILKDQGPKELFDGY 257

This family has a TIM barrel-like fold with a deep C-terminal trefoil knot. The arrangement of its hydrophilic and hydrophobic surfaces are opposite to that of the classic TIM barrel proteins. It is likely to bind RNA, and may function as a methyltransferase. Length = 283

>gnl|CDD|225017 COG2106, COG2106, Uncharacterized conserved protein [Function unknown]

 Score =  154 bits (390), Expect = 8e-45
 Identities = 77/246 (31%), Positives = 118/246 (47%), Gaps = 36/246 (14%)

Query: 62  TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
            +SVA+P S++     L+L T   GQIARA  IFR+DE++++++       ++       
Sbjct: 5   MLSVAIPTSLLSEENDLKLKTYKVGQIARAAAIFRVDEIIIYEDGDDVRRDAK------- 57

Query: 122 NRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWA-- 179
                      F+  LL+Y ETP YLRK +F +   L++ G+LPPL  P H         
Sbjct: 58  -----------FITTLLEYFETPPYLRKRVFPIKRELKYAGLLPPLRIPSHTVSTSPKEG 106

Query: 180 PFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPRQVVP 239
            +REG+ ++       G LVD+G +K   +     PG RVTV     R +   SP +V P
Sbjct: 107 EYREGLVIR---RGKKGNLVDIGKDKLAKLSSPAPPGARVTV-----RIISRSSPLRVEP 158

Query: 240 PSKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHL 299
              P     YWGYKVR A +++ + K          +I TS +G  ++  +   P    +
Sbjct: 159 AEPPD----YWGYKVRIAKSLNELLK---GFDLDVVVIATSRYG-PLDVRETEAPLKSKV 210

Query: 300 LIAFGG 305
            + FGG
Sbjct: 211 TLVFGG 216

Length = 272

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	331
PF02598	291	Methyltrn_RNA_3: Putative RNA methyltransferase; I	100.0
KOG3925	371	consensus Uncharacterized conserved protein [Funct	100.0
COG2106	272	Uncharacterized conserved protein [Function unknow	100.0
PRK03958	176	tRNA 2'-O-methylase; Reviewed	88.63

>PF02598 Methyltrn_RNA_3: Putative RNA methyltransferase; InterPro: IPR003750 This entry describes proteins of unknown function

Probab=100.00  E-value=4.5e-85  Score=624.93  Aligned_cols=254  Identities=51%  Similarity=0.904  Sum_probs=159.3

Q ss_pred             eEEEEecCccccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcCCCCCCccccccccccCCCCCCCcchHHHHHHHHhhh
Q 020088           62 TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRSNRSDENESGAAFLVRLLQYL  141 (331)
Q Consensus        62 tvSIAIP~SIlsnaqslelkT~~agqIARAaaIF~VdEIVVydd~~~~~~~~~~~~~~~~~~~~~~~~~~~fL~~lLqYl  141 (331)
                      |||||||+|||+||||+|+|||+|||||||||||||||||||||+....+...    ..........+++.||++|||||
T Consensus         1 tvSIaIP~Sil~n~~s~e~~T~~~gqIARaaaiF~VdEIvVydd~~~~~~~~~----~~~~~~~~~~~~~~~l~~lLqYl   76 (291)
T PF02598_consen    1 TVSIAIPGSILSNAQSLELKTYKAGQIARAAAIFRVDEIVVYDDSPKVQNNQD----GENEKGKSNRDDAEFLARLLQYL   76 (291)
T ss_dssp             -EEEEEETTTTTT---HHHHHHHHHHHHHHHHHTT--EEEEEE---------------------SSS--HHHHHHHHHHH
T ss_pred             CEEEEechHHhccCCCHHHHHHHHHHHHHHHHeecCcEEEEEccccccccccc----cccccccCCCCHHHHHHHHHHHh
Confidence            79999999999999999999999999999999999999999999532222111    01112334567899999999999


Q ss_pred             cCCchhhhhhcCCCCCccccCcCCCCCCCCCC-CCCCccCceeEEEeeccCCCCCceEEEeCCCceeeecc-cCCCCcEE
Q 020088          142 ETPQYLRKALFSMHSSLRFVGMLPPLDAPHHL-RKHEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVDQ-VLDPGVRV  219 (331)
Q Consensus       142 eTPpYLRK~LFP~~~~Lk~aGlLPPL~~PhH~-r~~~~~~yREGvvv~~~~~~g~~s~VdiGl~~~v~i~~-~l~~g~RV  219 (331)
                      ||||||||+|||+|++|||||+||||++|||+ +.++|++||||||+++..+.++++|||||+.+++.++. .+++|+||
T Consensus        77 eTPpYLRK~lFp~~~~Lk~aGlLppL~~phH~~~~~~~~~yREGvv~~~~~~~~~~~~VdiGl~~~v~i~~~~l~~g~RV  156 (291)
T PF02598_consen   77 ETPPYLRKRLFPIHPDLKYAGLLPPLDAPHHMSRSDEWGPYREGVVVRKPSKGGKGSYVDIGLDKPVEIDKQELPPGTRV  156 (291)
T ss_dssp             HS-HHHHHHHS---GGGCCGGGS-----TTS--SS--TT-EEEEEEEEE-SSS---EEEESSSSEEEESSS----SS-EE
T ss_pred             cCCHHHHHhhcccCcccccccccCCCCCCccccCCccccceeEEEEEeCCCCCCceEEEEeCCCcEEeecccccCCCCEE
Confidence            99999999999999999999999999999999 88999999999999998767777999999999999999 99999999


Q ss_pred             EEEecCCCCCCCCCCceecCCCCCCCCCcccceEEEEeCChHHHhhcCCCCCCCcEEEEeCCCCCCCCCCCCCCC--CCC
Q 020088          220 TVAMGTNRNLDADSPRQVVPPSKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLP--TFR  297 (331)
Q Consensus       220 TV~l~~~~~~~~~~~~~vVsp~~P~~~G~YWGY~VR~a~sL~~vf~e~p~~~gYD~~IgTS~~G~~i~~~~~~l~--~~k  297 (331)
                      ||+|++       ..|++|+|++|...|+||||+||+|+||++||++|||++|||++||||++|.++++.....+  +++
T Consensus       157 TV~~~~-------~~~~vVsp~~p~~~g~YwGY~VR~a~sl~~v~~~~~~~~GYd~~IgtS~~G~~~~~~~~~~~~~~~~  229 (291)
T PF02598_consen  157 TVRIKS-------LKGKVVSPSEPREAGYYWGYSVRIASSLSEVFTECPYPEGYDLIIGTSERGEPISSSELEIKSSSFK  229 (291)
T ss_dssp             EEEEEE-------SSS-EEEE---SS--S----EEEEECEHHHHHHHC------SEEEEE-TTS-BTTTSHHHHHHHT-S
T ss_pred             EEEecC-------CcCCEeCcccCCcCCccCCeEEEEeCCHHHHHhcCCcccccceEEEECCCCeeCchhhcccccCCCC
Confidence            999994       35899999999439999999999999999999999999999999999999999987665554  899


Q ss_pred             cEEEEEcCcccHHHHHhcCCCC--ccccccc
Q 020088          298 HLLIAFGGLAGLEESIEEDDGL--KVHYLLK  326 (331)
Q Consensus       298 hlLIVFGgp~GLe~~~~~D~~l--~~~~~~~  326 (331)
                      |+|||||||.+++.+++.|+++  .+.++.+
T Consensus       230 ~~LiVFGg~~~~~~~~~~~~~~~~~~~~~~~  260 (291)
T PF02598_consen  230 HLLIVFGGWSPLEGADEIDEKLFEGGEDAEE  260 (291)
T ss_dssp             EEEEE-----SSS---S--------------
T ss_pred             cEEEEEecCHHHhhccccccccccccccccc
Confidence            9999999999999999999954  4444433

; PDB: 1K3R_B.

>KOG3925 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.4e-83  Score=617.19  Aligned_cols=269  Identities=44%  Similarity=0.783  Sum_probs=245.2

Q ss_pred             CCCcceEEEEecCccccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcCCCCCCccccccccccCCCCCCCcchHHHHHH
Q 020088           57 PIEVPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRSNRSDENESGAAFLVR  136 (331)
Q Consensus        57 ~~r~~tvSIAIP~SIlsnaqslelkT~~agqIARAaaIF~VdEIVVydd~~~~~~~~~~~~~~~~~~~~~~~~~~~fL~~  136 (331)
                      .++.+|+|||||+|||+||||+||+|++||||||||++|+|||||||||.....+.+..     ...+.+..++|.||++
T Consensus        64 ~~~~~t~SIaiPgsil~n~~nlel~T~~a~QIAR~aslf~V~Eiivldd~~~~~~~~~~-----~~~~~~~~s~~~~L~~  138 (371)
T KOG3925|consen   64 ESRPYTYSIAIPGSILNNAQNLELATYFAGQIARAASLFRVDEIIVLDDSEYVTNEQVN-----TSSDKENISGCKLLAR  138 (371)
T ss_pred             CCCceEEEEEechHHHhhhhhhHHHHHHhhhhhhhheeecceeEEEecccchhhhhhhc-----ccccccccccHHHHHH
Confidence            67999999999999999999999999999999999999999999999998766554321     1123557789999999


Q ss_pred             HHhhhcCCchhhhhhcCCCCCccccCcCCCCCCCCCCCCCCccCceeEEEeeccCCCCCceEEEeCCCceeeec-ccCC-
Q 020088          137 LLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVD-QVLD-  214 (331)
Q Consensus       137 lLqYleTPpYLRK~LFP~~~~Lk~aGlLPPL~~PhH~r~~~~~~yREGvvv~~~~~~g~~s~VdiGl~~~v~i~-~~l~-  214 (331)
                      |||||||||||||+|||+|++|||||+|||||+|||++.+++++||||||+.+.++.|.+++|||||.+.+.|+ ..+. 
T Consensus       139 lLqYfetPqyLRk~~Fp~~~~Lk~ag~lppLd~~hh~~q~e~~~YREGvvi~~~~~~g~~~~in~gL~k~v~I~~~~v~~  218 (371)
T KOG3925|consen  139 LLQYFETPQYLRKTLFPKHPDLKYAGLLPPLDTPHHLRQDEKFRYREGVVIKRKSPAGHGYIINAGLKKEVYIDSKAVEA  218 (371)
T ss_pred             HHhhccCcHHHHHhhccCCccccccccCCCCCchHHhhhhhhhccccceeeccCCCCCCcceecccceeeEEecchhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998 5566 


Q ss_pred             CCcEEEEEecCCCCCCCCCCceecCCCCC-CCCCcccceEEEEeCChHHHhhcCCCCCCCcEEEEeCCCCCCCCCCCCCC
Q 020088          215 PGVRVTVAMGTNRNLDADSPRQVVPPSKP-KESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTL  293 (331)
Q Consensus       215 ~g~RVTV~l~~~~~~~~~~~~~vVsp~~P-~~~G~YWGY~VR~a~sL~~vf~e~p~~~gYD~~IgTS~~G~~i~~~~~~l  293 (331)
                      ||+||||+|+...+....+.|+||||++| +++|+||||+||+|++|++||++|||++|||++||||.+|..|.+.+...
T Consensus       219 p~~RvtV~l~aq~~~~~t~~g~IVSp~~pr~~tGlywGY~VR~assls~vf~~~P~~~GYD~~vg~s~rg~~I~s~~~~~  298 (371)
T KOG3925|consen  219 PGTRVTVRLNAQTVTCDTLRGKIVSPQDPREETGLYWGYKVRLASSLSEVFSESPFKGGYDFVVGTSTRGSAIASLSLEA  298 (371)
T ss_pred             CcceEEEecCCcCchhhhhcccccCCCCcccccCcccceeeehhhhHHHHhhcCCccCCcceEEEeccCCcccccccccc
Confidence            99999999995434555678999999999 99999999999999999999999999999999999999999998877777


Q ss_pred             CCCCcEEEEEcCcccHHHHHhcCCCCccccccccccC
Q 020088          294 PTFRHLLIAFGGLAGLEESIEEDDGLKVHYLLKSYSL  330 (331)
Q Consensus       294 ~~~khlLIVFGgp~GLe~~~~~D~~l~~~~~~~~~~~  330 (331)
                      +.+.|+|+|||||+||+.+|+.|+...+.+.--.+.+
T Consensus       299 ~t~~~iLlvfg~l~~l~~a~e~~~~~~~~~~~~~f~~  335 (371)
T KOG3925|consen  299 ETPPHILLVFGGLAGLVRAFELDEQTTWRDSEDPFDV  335 (371)
T ss_pred             CCCCcEEEEeechhhHHHHHHhccchhccccCCchhh
Confidence            8899999999999999999999999888877655544

>COG2106 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.5e-59  Score=441.07  Aligned_cols=223  Identities=35%  Similarity=0.634  Sum_probs=193.7

Q ss_pred             CCcceEEEEecCccccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcCCCCCCccccccccccCCCCCCCcchHHHHHHH
Q 020088           58 IEVPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRSNRSDENESGAAFLVRL  137 (331)
Q Consensus        58 ~r~~tvSIAIP~SIlsnaqslelkT~~agqIARAaaIF~VdEIVVydd~~~~~~~~~~~~~~~~~~~~~~~~~~~fL~~l  137 (331)
                      .|..++|||||+|++++|.|++++||++||||||||||||||||||+|+....+                  ++.||+.|
T Consensus         1 ~~~~~~Sv~iP~Sll~~~~dl~~kT~Kvg~IARaaaiF~V~eIii~~D~~~~~~------------------~~~~i~~l   62 (272)
T COG2106           1 SRRVMLSVAIPTSLLSEENDLKLKTYKVGQIARAAAIFRVDEIIIYEDGDDVRR------------------DAKFITTL   62 (272)
T ss_pred             CceeEEEEEcchHHhhccCCHHHhHHHHHHHHHHHHhhcccEEEEEeCCCCccc------------------hhHHHHHH
Confidence            367899999999999999999999999999999999999999999999854322                  58999999


Q ss_pred             HhhhcCCchhhhhhcCCCCCccccCcCCCCCCCCCCCC--CCccCceeEEEeeccCCCCCceEEEeCCCceeeecccCCC
Q 020088          138 LQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRK--HEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDP  215 (331)
Q Consensus       138 LqYleTPpYLRK~LFP~~~~Lk~aGlLPPL~~PhH~r~--~~~~~yREGvvv~~~~~~g~~s~VdiGl~~~v~i~~~l~~  215 (331)
                      ||||+|||||||++||++++|||||+||||++|||+..  +.+|+||||+|+.+.   +++.+||||+++.+.+...+++
T Consensus        63 L~Y~~TPpyLRK~vFp~~~~LkyAg~lPPL~ip~h~~~~~~~~Ge~ReG~v~~~~---~~~~~v~iG~~~~~~l~~~~~~  139 (272)
T COG2106          63 LEYFETPPYLRKRVFPIKRELKYAGLLPPLRIPSHTVSTSPKEGEYREGLVIRRG---KKGNLVDIGKDKLAKLSSPAPP  139 (272)
T ss_pred             HHHhcCCHHHHhhhcCCCcccccccccCCCCCCCccCcCCccceeecceEEEEec---CCceEEEecCCcceeccCCCCC
Confidence            99999999999999999999999999999999999976  789999999999984   6779999999999999999999


Q ss_pred             CcEEEEEecCCCCCCCCCCceecCCCCCCCCCcccceEEEEeCChHHHhhcCCCCCCCcEEEEeCCCCCCCCCCCCCCCC
Q 020088          216 GVRVTVAMGTNRNLDADSPRQVVPPSKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPT  295 (331)
Q Consensus       216 g~RVTV~l~~~~~~~~~~~~~vVsp~~P~~~G~YWGY~VR~a~sL~~vf~e~p~~~gYD~~IgTS~~G~~i~~~~~~l~~  295 (331)
                      |+||||++.+..      ....|.|.+|  .+ ||||+||.+++|.++++..   +.++.+|+||++| +++..+...+.
T Consensus       140 ~~RvTvri~~~~------~p~~~~~~~~--~~-YwGY~V~~~~~L~e~~~~~---~~~~vvi~tsr~g-~~~~~e~~~~~  206 (272)
T COG2106         140 GARVTVRIISRS------SPLRVEPAEP--PD-YWGYKVRIAKSLNELLKGF---DLDVVVIATSRYG-PLDVRETEAPL  206 (272)
T ss_pred             CceEEEEEEecc------CceeeecCCC--CC-cCcEEEEehhhHHHHhhcc---CCCceEEEecccC-cceeeeccccc
Confidence            999999998542      1223444544  23 9999999999999999854   3344789999999 66555566666


Q ss_pred             CCcEEEEEcCc-ccHHHHHh
Q 020088          296 FRHLLIAFGGL-AGLEESIE  314 (331)
Q Consensus       296 ~khlLIVFGgp-~GLe~~~~  314 (331)
                      ...+++|||+| .||.++..
T Consensus       207 ~~~~~~~fg~P~~gv~~~~~  226 (272)
T COG2106         207 KSKVTLVFGGPEKGVLEILK  226 (272)
T ss_pred             CCcceEEecCcccChheecc
Confidence            67899999999 99998865

>PRK03958 tRNA 2'-O-methylase; Reviewed

Probab=88.63  E-value=0.3  Score=44.60  Aligned_cols=70  Identities=23%  Similarity=0.264  Sum_probs=44.2

Q ss_pred             cccc--eEEEEeCChHHHhhcCCCCCC-CcEEEEeCCCCCCCCCCCCCCC----CCCcEEEEEcCcccHHHHHh-cCCCC
Q 020088          248 MYWG--YKVRYAPNISSVFKNCSYKGG-YDHLIGTSEHGDIVNSSDLTLP----TFRHLLIAFGGLAGLEESIE-EDDGL  319 (331)
Q Consensus       248 ~YWG--Y~VR~a~sL~~vf~e~p~~~g-YD~~IgTS~~G~~i~~~~~~l~----~~khlLIVFGgp~GLe~~~~-~D~~l  319 (331)
                      -|||  |.|+...|+.+++.+.. .+| .=.++.|+.+-.+   ...++.    ..+.+|||||||+=-.++++ +|=+|
T Consensus        52 ~~WGg~fnv~~~~s~~~~i~~~k-~~G~vvhLtmyga~~~~---~~~~ir~~~~~~~p~LIvvGg~gvp~evye~aDynl  127 (176)
T PRK03958         52 ERWGGPFEVEVTKSWKKEIREWK-DGGIVVHLTMYGENIQD---VEPEIREAHRKGEPLLIVVGAEKVPREVYELADWNV  127 (176)
T ss_pred             HhcCCceEEEEcCCHHHHHHHHH-hCCcEEEEEEecCCccc---hHHHHHHhhccCCcEEEEEcCCCCCHHHHhhCCEEe
Confidence            5897  67999999999999876 333 3345566554333   222221    25679999998855555554 45555


Q ss_pred             cc
Q 020088          320 KV  321 (331)
Q Consensus       320 ~~  321 (331)
                      .+
T Consensus       128 gv  129 (176)
T PRK03958        128 AV  129 (176)
T ss_pred             cc
Confidence            33

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	331
1k3r_A	268	Crystal Structure Of The Methyltransferase With A K		3e-16

>pdb|1K3R|A Chain A, Crystal Structure Of The Methyltransferase With A Knot From Methanobacterium Thermoautotrophicum Length = 268

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 116/249 (46%), Gaps = 41/249 (16%)
Query: 63  VSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKXXXXXXXXXXXXXXXX 122
           +S+ +P S+   T  L++ T     IARA +IF +  +V++ +                 
Sbjct: 6   LSLFIPDSLTAETGDLKIKTYKVVLIARAASIFGVKRIVIYHD----------------- 48
Query: 123 XXXENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHH-LRKHEWAPF 181
              + +  A F+  +L Y++TPQYLR+ +F +   L+ VG+LPPL  PHH   K     +
Sbjct: 49  ---DADGEARFIRDILTYMDTPQYLRRKVFPIMRELKHVGILPPLRTPHHPTGKPVTGEY 105
Query: 182 REGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPRQVVPPS 241
           R+G+T+K       GTLVD+G +K  +  +      ++TV    +  +       ++ P 
Sbjct: 106 RQGLTVKRVKK---GTLVDIGADKLALCRE------KLTVNRIMSFRVVRLGKEILIEPD 156
Query: 242 KPKESGMYWGYKV-RYAPNISSVFKNCSYKGGYDHLIGTSEHG----DIVNSSDLTLPTF 296
           +P++   YWGY+V     N++   K      G D ++ TS +      I++     +   
Sbjct: 157 EPEDR--YWGYEVLDTRRNLAESLKTV----GADVVVATSRNASPITSILDEVKTRMRGA 210
Query: 297 RHLLIAFGG 305
           R   I FGG
Sbjct: 211 REAAILFGG 219

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	331
1k3r_A	268	Conserved protein MT0001; beta barrel, structural	1e-83

>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.40.4.10 c.116.1.2 Length = 268

 Score =  252 bits (646), Expect = 1e-83
 Identities = 69/261 (26%), Positives = 113/261 (43%), Gaps = 41/261 (15%)

Query: 62  TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
            +S+ +P S+   T  L++ T     IARA +IF +  +V++                  
Sbjct: 5   DLSLFIPDSLTAETGDLKIKTYKVVLIARAASIFGVKRIVIYH----------------- 47

Query: 122 NRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEW-AP 180
              D+ +  A F+  +L Y++TPQYLR+ +F +   L+ VG+LPPL  PHH         
Sbjct: 48  ---DDADGEARFIRDILTYMDTPQYLRRKVFPIMRELKHVGILPPLRTPHHPTGKPVTGE 104

Query: 181 FREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPRQVVPP 240
           +R+G+T+K       GTLVD+G +K  +  + L     ++  +             ++ P
Sbjct: 105 YRQGLTVKRVKK---GTLVDIGADKLALCREKLTVNRIMSFRVVR------LGKEILIEP 155

Query: 241 SKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSS----DLTLPTF 296
            +P     YWGY+V    +            G D ++ TS +   + S        +   
Sbjct: 156 DEP--EDRYWGYEVL---DTRRNLAESLKTVGADVVVATSRNASPITSILDEVKTRMRGA 210

Query: 297 RHLLIAFGG-LAGLEESIEED 316
           R   I FGG   GL E I+ D
Sbjct: 211 REAAILFGGPYKGLPE-IDAD 230

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	331
1k3r_A	268	Conserved protein MT0001; beta barrel, structural	100.0

>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.40.4.10 c.116.1.2

Probab=100.00  E-value=1.1e-76  Score=559.23  Aligned_cols=214  Identities=31%  Similarity=0.525  Sum_probs=193.8

Q ss_pred             cceEEEEecCccccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcCCCCCCccccccccccCCCCCCCcchHHHHHHHHh
Q 020088           60 VPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRSNRSDENESGAAFLVRLLQ  139 (331)
Q Consensus        60 ~~tvSIAIP~SIlsnaqslelkT~~agqIARAaaIF~VdEIVVydd~~~~~~~~~~~~~~~~~~~~~~~~~~~fL~~lLq  139 (331)
                      ++|+|||||+||++||||+|+|||+|||||||||||||||||||||...                    +++.||++|||
T Consensus         3 ~~t~SIaIP~Sil~~a~s~e~kT~~~gqIARAaaIF~VdEIvVy~d~~~--------------------~~~~~l~~iL~   62 (268)
T 1k3r_A            3 RVDLSLFIPDSLTAETGDLKIKTYKVVLIARAASIFGVKRIVIYHDDAD--------------------GEARFIRDILT   62 (268)
T ss_dssp             SCEEEEEEETTTTTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEECSSC--------------------CCHHHHHHHHH
T ss_pred             eeEEEEEechHHhccCCCHHHHHHHHHHHHHHHHhccccEEEEEeCCCC--------------------CHHHHHHHHHH
Confidence            3899999999999999999999999999999999999999999988631                    25889999999


Q ss_pred             hhcCCchhhhhhcCCCCCccccCcCCCCCCCCCCCC-CCccCceeEEEeeccCCCCCceEEEeCCCceeeecccCC--CC
Q 020088          140 YLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRK-HEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLD--PG  216 (331)
Q Consensus       140 YleTPpYLRK~LFP~~~~Lk~aGlLPPL~~PhH~r~-~~~~~yREGvvv~~~~~~g~~s~VdiGl~~~v~i~~~l~--~g  216 (331)
                      ||||||||||+|||+|++|||||+||||++|||++. ++|++||||+|+++.   ++++|||||+.+++.++  +|  +|
T Consensus        63 YleTPpYLRK~lFp~~~~Lk~aGlLPpL~~phH~~~~~~~~~yREGvv~~~~---~~~~~VdiGl~~~v~~~--~p~~~g  137 (268)
T 1k3r_A           63 YMDTPQYLRRKVFPIMRELKHVGILPPLRTPHHPTGKPVTGEYRQGLTVKRV---KKGTLVDIGADKLALCR--EKLTVN  137 (268)
T ss_dssp             HHHSCHHHHHHHCCCCGGGGGGGGCCCCCCTTSCCSSCCTTCEEEEEEEEEC---SSSEEEESSSSCEEECS--SCCCSS
T ss_pred             HhcCChhHhHhhCCCCcCcceecCcCCCCCCCCCCCCCCccceEEEEEEEec---CCceEEEeCCCceEEEe--cCCCCC
Confidence            999999999999999999999999999999999987 899999999999873   56799999999999998  88  99


Q ss_pred             cEEEEEecCCCCCCCCCCceecCCCCCCCCCcccceEEEEe--CChHHHhhcCCCCCCCcEEEEeCCCCCCCCCCCCC-C
Q 020088          217 VRVTVAMGTNRNLDADSPRQVVPPSKPKESGMYWGYKVRYA--PNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLT-L  293 (331)
Q Consensus       217 ~RVTV~l~~~~~~~~~~~~~vVsp~~P~~~G~YWGY~VR~a--~sL~~vf~e~p~~~gYD~~IgTS~~G~~i~~~~~~-l  293 (331)
                      +||||+|++..   ..+.+++|+|+     |+||||+||.|  + |+++|++|    |||++||||++|.+++ ..+. +
T Consensus       138 ~RVTV~~~~~~---~~~~~~~V~p~-----~~YwGY~Vr~~~~~-l~~v~~~~----gyd~~I~TS~~G~~~~-~~l~~~  203 (268)
T 1k3r_A          138 RIMSFRVVRLG---KEILIEPDEPE-----DRYWGYEVLDTRRN-LAESLKTV----GADVVVATSRNASPIT-SILDEV  203 (268)
T ss_dssp             CEEEEEEEECS---SSCEEEECCCS-----SSCCCCEEEEEEEE-HHHHHHHH----CCSEEEEECTTSCBTT-TSHHHH
T ss_pred             cEEEEEecCCC---ccceeEEcCCC-----CCccCeEEEEehhh-HHHHHhhc----CCCeEEEECCCCCCch-hccchh
Confidence            99999998552   33568999887     67999999999  8 99999998    7999999999999886 3221 2


Q ss_pred             ----CCCCcEEEEEcCc-ccHHHH
Q 020088          294 ----PTFRHLLIAFGGL-AGLEES  312 (331)
Q Consensus       294 ----~~~khlLIVFGgp-~GLe~~  312 (331)
                          .+++|+||||||| +||+++
T Consensus       204 ~~~~~~~~~~liVFG~~~~Gl~~~  227 (268)
T 1k3r_A          204 KTRMRGAREAAILFGGPYKGLPEI  227 (268)
T ss_dssp             HHHHTTCSEEEEECCCSSSCCCSC
T ss_pred             hhcccCCCeEEEEECCccccchhh
Confidence                3689999999999 999976

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	331
d1k3ra2	191	c.116.1.2 (A:1-92,A:164-262) Hypothetical protein	4e-42
d1k3ra1	71	b.40.4.10 (A:93-163) Hypothetical protein MTH1 (MT	0.002

>d1k3ra2 c.116.1.2 (A:1-92,A:164-262) Hypothetical protein MTH1 (MT0001), dimerisation domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 191

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: Hypothetical protein MTH1 (MT0001), dimerisation domain
domain: Hypothetical protein MTH1 (MT0001), dimerisation domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score =  142 bits (360), Expect = 4e-42
 Identities = 52/256 (20%), Positives = 85/256 (33%), Gaps = 102/256 (39%)

Query: 62  TVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRS 121
            +S+ +P S+   T  L++ T     IARA +IF +  +V++                  
Sbjct: 5   DLSLFIPDSLTAETGDLKIKTYKVVLIARAASIFGVKRIVIYH----------------- 47

Query: 122 NRSDENESGAAFLVRLLQYLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPF 181
              D+ +  A F+  +L Y++TPQYLR+ +F +   L+ VG+LPPL   + +        
Sbjct: 48  ---DDADGEARFIRDILTYMDTPQYLRRKVFPIMRELKHVGILPPLRTGYEVL-----DT 99

Query: 182 REGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPRQVVPPS 241
           R  +           +L  VG +                V + T                
Sbjct: 100 RRNL---------AESLKTVGAD----------------VVVAT---------------- 118

Query: 242 KPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSDLTLPTFRHLLI 301
                        R A  I+S+                       +     +   R   I
Sbjct: 119 ------------SRNASPITSIL----------------------DEVKTRMRGAREAAI 144

Query: 302 AFGG-LAGLEESIEED 316
            FGG   GL E I+ D
Sbjct: 145 LFGGPYKGLPE-IDAD 159

>d1k3ra1 b.40.4.10 (A:93-163) Hypothetical protein MTH1 (MT0001), insert domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 71

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Hypothetical protein MTH1 (MT0001), insert domain
domain: Hypothetical protein MTH1 (MT0001), insert domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 12/82 (14%)

Query: 170 PHH-LRKHEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRN 228
           PHH   K     +R+G+T+K       GTLVD+G +K  +  + L     ++      R 
Sbjct: 1   PHHPTGKPVTGEYRQGLTVKRVKK---GTLVDIGADKLALCREKLTVNRIMSF-----RV 52

Query: 229 LDADSPRQVVPPSKPKESGMYW 250
           +       +  P +P++   YW
Sbjct: 53  VRLGKEILIE-PDEPED--RYW 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	331
d1k3ra2	191	Hypothetical protein MTH1 (MT0001), dimerisation d	100.0
d1k3ra1	71	Hypothetical protein MTH1 (MT0001), insert domain	99.31

>d1k3ra2 c.116.1.2 (A:1-92,A:164-262) Hypothetical protein MTH1 (MT0001), dimerisation domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: Hypothetical protein MTH1 (MT0001), dimerisation domain
domain: Hypothetical protein MTH1 (MT0001), dimerisation domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=8.9e-53  Score=376.62  Aligned_cols=149  Identities=30%  Similarity=0.502  Sum_probs=127.1

Q ss_pred             cceEEEEecCccccCCCCHHHHHHHHHHHHHHHhhhcccEEEEEcCCCCCCccccccccccCCCCCCCcchHHHHHHHHh
Q 020088           60 VPTVSVAVPGSIIDNTQSLELATRLAGQIARAVTIFRIDEVVVFDNKSSSDNYSRSSAANRSNRSDENESGAAFLVRLLQ  139 (331)
Q Consensus        60 ~~tvSIAIP~SIlsnaqslelkT~~agqIARAaaIF~VdEIVVydd~~~~~~~~~~~~~~~~~~~~~~~~~~~fL~~lLq  139 (331)
                      +.++|||||+||++|+||+|+|||++||||||||||+|||||||||...                    +++.||++|||
T Consensus         3 ~~~lSvaiP~Sil~~~~s~~~~t~~~g~iARa~~if~Vdeivv~dd~~~--------------------~~~~~l~~iL~   62 (191)
T d1k3ra2           3 RVDLSLFIPDSLTAETGDLKIKTYKVVLIARAASIFGVKRIVIYHDDAD--------------------GEARFIRDILT   62 (191)
T ss_dssp             SCEEEEEEETTTTTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEECSSC--------------------CCHHHHHHHHH
T ss_pred             ceEEEEEeChHHhccCCCHHHHHHHHHHHHHHHHhccccEEEEEcCCCc--------------------cHhHHHHHHHH
Confidence            5799999999999999999999999999999999999999999998632                    25789999999


Q ss_pred             hhcCCchhhhhhcCCCCCccccCcCCCCCCCCCCCCCCccCceeEEEeeccCCCCCceEEEeCCCceeeecccCCCCcEE
Q 020088          140 YLETPQYLRKALFSMHSSLRFVGMLPPLDAPHHLRKHEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRV  219 (331)
Q Consensus       140 YleTPpYLRK~LFP~~~~Lk~aGlLPPL~~PhH~r~~~~~~yREGvvv~~~~~~g~~s~VdiGl~~~v~i~~~l~~g~RV  219 (331)
                      ||||||||||+|||+|++|||||+||||++|||.+     ++|+|+                                  
T Consensus        63 YletP~YLRK~lfp~~~~Lk~aGlLpPL~~p~hv~-----~~~~~~----------------------------------  103 (191)
T d1k3ra2          63 YMDTPQYLRRKVFPIMRELKHVGILPPLRTGYEVL-----DTRRNL----------------------------------  103 (191)
T ss_dssp             HHHSCHHHHHHHCCCCGGGGGGGGCCCCCCCCEEE-----EEEEEH----------------------------------
T ss_pred             HHcCCcccccccCCCCcccccccCCCCccCCcccc-----cccccc----------------------------------
Confidence            99999999999999999999999999999999943     223221                                  


Q ss_pred             EEEecCCCCCCCCCCceecCCCCCCCCCcccceEEEEeCChHHHhhcCCCCCCCcEEEEeCCCCCCCCCCC----CCCCC
Q 020088          220 TVAMGTNRNLDADSPRQVVPPSKPKESGMYWGYKVRYAPNISSVFKNCSYKGGYDHLIGTSEHGDIVNSSD----LTLPT  295 (331)
Q Consensus       220 TV~l~~~~~~~~~~~~~vVsp~~P~~~G~YWGY~VR~a~sL~~vf~e~p~~~gYD~~IgTS~~G~~i~~~~----~~l~~  295 (331)
                                                                   .+|.+..|||++|||||+|+++.+..    ..+++
T Consensus       104 ---------------------------------------------~~~l~~~g~d~~I~TSr~G~~i~~~~~~~~~~~~~  138 (191)
T d1k3ra2         104 ---------------------------------------------AESLKTVGADVVVATSRNASPITSILDEVKTRMRG  138 (191)
T ss_dssp             ---------------------------------------------HHHHHHHCCSEEEEECTTSCBTTTSHHHHHHHHTT
T ss_pred             ---------------------------------------------ccccccCCCCeEEEeCCCCcChhhhhhhccccccC
Confidence                                                         11222348999999999999997542    23468


Q ss_pred             CCcEEEEEcCc-ccHHHH
Q 020088          296 FRHLLIAFGGL-AGLEES  312 (331)
Q Consensus       296 ~khlLIVFGgp-~GLe~~  312 (331)
                      ++|+||||||| +||+++
T Consensus       139 ~~~~lvVFGgP~~Gl~~i  156 (191)
T d1k3ra2         139 AREAAILFGGPYKGLPEI  156 (191)
T ss_dssp             CSEEEEECCCSSSCCCSC
T ss_pred             CCeEEEEECCcccCchhh
Confidence            99999999998 999864

>d1k3ra1 b.40.4.10 (A:93-163) Hypothetical protein MTH1 (MT0001), insert domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Hypothetical protein MTH1 (MT0001), insert domain
domain: Hypothetical protein MTH1 (MT0001), insert domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.31  E-value=1.6e-12  Score=97.34  Aligned_cols=70  Identities=29%  Similarity=0.536  Sum_probs=59.8

Q ss_pred             CCCCC-CCCccCceeEEEeeccCCCCCceEEEeCCCceeeecccCCCCcEEEEEecCCCCCCCCCCceecCCCCCCCCCc
Q 020088          170 PHHLR-KHEWAPFREGVTLKENAPNSVGTLVDVGLNKHVVVDQVLDPGVRVTVAMGTNRNLDADSPRQVVPPSKPKESGM  248 (331)
Q Consensus       170 PhH~r-~~~~~~yREGvvv~~~~~~g~~s~VdiGl~~~v~i~~~l~~g~RVTV~l~~~~~~~~~~~~~vVsp~~P~~~G~  248 (331)
                      |||.. .+..|+||||+++++.   ++|+||||||++++.+...+..+.|+||+|.+..      +...|.|.+|++.  
T Consensus         1 PhH~~g~p~vGEiReG~~~rr~---~~g~~vDiGlD~la~~k~~~~~~~r~tfrIvs~~------~pl~VeP~ep~e~--   69 (71)
T d1k3ra1           1 PHHPTGKPVTGEYRQGLTVKRV---KKGTLVDIGADKLALCREKLTVNRIMSFRVVRLG------KEILIEPDEPEDR--   69 (71)
T ss_dssp             TTSCCSSCCTTCEEEEEEEEEC---SSSEEEESSSSCEEECSSCCCSSCEEEEEEEECS------SSCEEEECCCSSS--
T ss_pred             CCCcCCCCcccceeeEEEEEec---CCcEEEEecCCceeeeecccccCcEEEEEEEEcC------CceEeecCCcccc--
Confidence            89964 4689999999999984   7889999999999999999999999999998642      2456789999654  


Q ss_pred             cc
Q 020088          249 YW  250 (331)
Q Consensus       249 YW  250 (331)
                      ||
T Consensus        70 YW   71 (71)
T d1k3ra1          70 YW   71 (71)
T ss_dssp             CC
T ss_pred             cC
Confidence            99