Citrus Sinensis ID: 020092

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
Protein Sequence
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT
Secondary Structure (PSIPRED)
ccccccccccccHHcccccccccccccccccEEEEEcccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccEEEEEEEEEcccccEEEEccccEEEEEEEcccEEEEcccccccEEEEEEEccccEEEEEEccHHHHHHHHHHHcccccccccHHHHHHHHHHHHccEEEEEEEEEEEccEEEEEEEEEEcccccEEEEEEccHHHHHHHHHHccccEEEEHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccEEcccHHHHHcccccccccccccHccccEHHHHHcccccccEEEEEEEcccccccccccEEEEEEccccccccccccccccccHHHcccEEEEEEEEEcccccEEEEEccccEEEEEEcccccccccccccccEEEEEEcccccEEEEEEEccHHHHHHHHHHcccccccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEEcccEEEEEEEEccccHHHHHHHHccccEEEcHHHHHHcccEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mgslqgpvfcpavrarqgglyntvpstgpvmkarffrselwgfkgltaVKTKVGVFTrqqnarkckivqctfssssngngsmaenfnendedfvNSSVVEAVevksgadgfmikmrdgrhlrcvhnnpqgghlpdyaphpaIVLKmedgtglllPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTkvgnetecvsfdlrpsdainIAVRCKVPIqvnkylaysdgmrviesgklsthspgsdgllfteldkpsgqpcldtkefNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT
Flexible Loop (DISEMBL)
MGSLQGPVFCPAvrarqgglyntvpstgpvMKARFFRSELWGFKGLTAVKTKVGvftrqqnarkckivqctfssssngngSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVEERYRDAAQWRDKlgqlrakrnlrkft
Low Complexity Region (SEG)
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAenfnendedfVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT
Disordered region (IsUnstruct)
*******VFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTF*************************VVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE**************LFT********PCLDTKEFNLVRNMLIAAVEERYRDAAQWRDK**************
Disordered Region (DISOPRED)
****QGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKT***************************************EDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYS****************************************NLVRNMLIAAVEERYRDAAQWRD***************
Disordered Region (DISEMBL)
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT
Disordered Region (DISPRO)
***LQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSS**************NDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIES***********************QPCLDTKEFNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKRN*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	331	2.2.26 [Sep-21-2011]
Q9FWS6	325	Bifunctional nuclease 1 O	yes	no	0.972	0.990	0.748	1e-143
Q93VH2	329	Bifunctional nuclease 2 O	no	no	0.993	1.0	0.712	1e-139
Q6YZM6	325	Bifunctional nuclease 2 O	yes	no	0.957	0.975	0.595	1e-111
Q09LL3	331	Bifunctional nuclease OS=	N/A	no	0.975	0.975	0.516	4e-87
Q5N8J3	331	Bifunctional nuclease 1 O	no	no	0.975	0.975	0.516	8e-87
B8A8D2	331	Bifunctional nuclease 1 O	N/A	no	0.975	0.975	0.516	4e-86
Q50604	164	Uncharacterized protein R	yes	no	0.341	0.689	0.225	0.0003

>sp|Q9FWS6|BBD1_ARATH Bifunctional nuclease 1 OS=Arabidopsis thaliana GN=BBD1 PE=2 SV=1

 Score =  507 bits (1306), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 250/334 (74%), Positives = 281/334 (84%), Gaps = 12/334 (3%)

Query: 1   MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWG--FKGLTAVKTKVGVFT 57
           M S+Q PV CPA+R RQ G   + V  TG  +K R   S+ WG   KG+ +  T   +  
Sbjct: 1   MRSVQAPVVCPAIRPRQVGACASLVNYTG--LKPR---SQFWGNRTKGVKSQGTTTTITL 55

Query: 58  RQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRD 117
           R  N    K ++C FSS S+GNGS AENFNENDE++VNSSVVEAVEVKSGADGFM+KMRD
Sbjct: 56  RLCN----KSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRD 111

Query: 118 GRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIAR 177
           GR LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIAR
Sbjct: 112 GRQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIAR 171

Query: 178 PTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIA 237
           PT+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQL+L+KVGN +ECVSFDLRPSDAINIA
Sbjct: 172 PTMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIA 231

Query: 238 VRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVR 297
           VRCK+PIQVNKYLAYSDGMRVIESGK+ST +P SDGLLFTE D+P+GQ CLDTKEFN++ 
Sbjct: 232 VRCKIPIQVNKYLAYSDGMRVIESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNILS 291

Query: 298 NMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 331
            M+ A  EERY +AA+WRDKLGQ RAKRNLRK+T
Sbjct: 292 KMMQAVDEERYDEAAEWRDKLGQFRAKRNLRKYT 325

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q93VH2|BBD2_ARATH Bifunctional nuclease 2 OS=Arabidopsis thaliana GN=BBD2 PE=2 SV=1

 Score =  495 bits (1275), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/331 (71%), Positives = 277/331 (83%), Gaps = 2/331 (0%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           M SLQ PV CP+VR RQ G+   + +   V K R  R + WG +     K++      + 
Sbjct: 1   MRSLQAPVVCPSVRPRQLGVSALLVNCS-VSKTRSLRKQFWGNQTKND-KSQAATVNLRL 58

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
           + R+ K ++C FSS S+G GS AENFNENDED+V SSV+EAVEVKSG DGFM+KM+DGR 
Sbjct: 59  HLRRYKSIKCLFSSHSDGTGSTAENFNENDEDYVKSSVLEAVEVKSGPDGFMVKMKDGRQ 118

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNPQGG+LP+YAPH AIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIARPT+
Sbjct: 119 LRCVHNNPQGGNLPNYAPHSAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARPTM 178

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVK+M++KMGYEVRLVRVT RVHEAYFA+LYL+KVG++++CVSFDLRPSDAINIAVRC
Sbjct: 179 YQVVKDMVDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIAVRC 238

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 300
           KVPIQVNKYLAYSDGMRVI+SGKLS  +P SDGLLFTELD+P+GQPC DTKEF+LVRNM+
Sbjct: 239 KVPIQVNKYLAYSDGMRVIDSGKLSKQTPASDGLLFTELDRPNGQPCFDTKEFDLVRNMM 298

Query: 301 IAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 331
            A  EERY +AA+WRDKLG+ +AKR LRK+T
Sbjct: 299 QAVDEERYDEAAEWRDKLGKFQAKRKLRKYT 329

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q6YZM6|BBD2_ORYSJ Bifunctional nuclease 2 OS=Oryza sativa subsp. japonica GN=BBD2 PE=2 SV=1

 Score =  400 bits (1027), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/326 (59%), Positives = 258/326 (79%), Gaps = 9/326 (2%)

Query: 3   SLQGPVFCPAVRARQ---GGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQ 59
           +++GP+ C AV   +     + N++  +G +  A  F   +  ++ +T + + +    ++
Sbjct: 2   AMEGPILCRAVMQAKLPVTMISNSLTKSGQLGTA--FLGCVCKYRNITRLISPIYQPAQK 59

Query: 60  QNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGR 119
             A  C     +FSSSS+GNG MA NF+E+DED+VNS+V+EAVEV+SGA+G++IKMRDG+
Sbjct: 60  NFATVCG----SFSSSSDGNGYMAGNFSESDEDYVNSTVLEAVEVRSGAEGYVIKMRDGK 115

Query: 120 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPT 179
           +LRCVHNN QG ++P+ AP PAIVL++EDG+  LLPIIVLEMPSVLLMAA+RNV IARPT
Sbjct: 116 NLRCVHNNSQGRNIPESAPQPAIVLRIEDGSETLLPIIVLEMPSVLLMAAIRNVHIARPT 175

Query: 180 LYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVR 239
           +YQVVKEMI+KMGYEV+LVR+ KR+ EAY A+L+LTKVG+ TE ++FDLRPSDAINIAVR
Sbjct: 176 IYQVVKEMIDKMGYEVKLVRINKRIQEAYCAELFLTKVGDHTESITFDLRPSDAINIAVR 235

Query: 240 CKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNM 299
           CKVPIQV++ LAYSDG+R +E  +++  +  SDGLLFTELD+P GQPC++ +EF L+RNM
Sbjct: 236 CKVPIQVHRSLAYSDGIRSVEPARMAIAAGMSDGLLFTELDRPDGQPCVEAQEFGLIRNM 295

Query: 300 LIAAVEERYRDAAQWRDKLGQLRAKR 325
           LIAAVEERY+DAA WRDKL  LR+KR
Sbjct: 296 LIAAVEERYKDAATWRDKLMLLRSKR 321

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q09LL3|BBD_ORYMI Bifunctional nuclease OS=Oryza minuta GN=BBD PE=2 SV=1

 Score =  321 bits (823), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 170/329 (51%), Positives = 239/329 (72%), Gaps = 6/329 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
           M  + GPV         G L +    +G +++    R    G +G    A +   G F  
Sbjct: 1   MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59

Query: 59  QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
           +++AR   +  V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60  ERHARSGWVWPVYCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119

Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
           DG++LRCV NNP+   L D APH AIVLKMEDG+ LLLPIIV+E PS++L+AA+RN++I 
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179

Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
           RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239

Query: 237 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLV 296
           A RCKVPIQVN+ +AY++G++V++     ++   SD   +T LD+P  QPC + +EF+LV
Sbjct: 240 AFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQYTRLDRPDDQPCFEAQEFDLV 298

Query: 297 RNMLIAAVEERYRDAAQWRDKLGQLRAKR 325
           RNML+AAVEERY+DAAQ+RD+L   RAK+
Sbjct: 299 RNMLVAAVEERYKDAAQYRDQLFMFRAKK 327

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza minuta (taxid: 63629)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5N8J3|BBD1_ORYSJ Bifunctional nuclease 1 OS=Oryza sativa subsp. japonica GN=BBD1 PE=2 SV=1

 Score =  320 bits (821), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 170/329 (51%), Positives = 239/329 (72%), Gaps = 6/329 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
           M  + GPV         G L +    +G +++    R    G +G    A +   G F  
Sbjct: 1   MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59

Query: 59  QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
           +++AR   +  V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60  ERHARSGWVWPVCCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119

Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
           DG++LRCV NNP+   L D APH AIVLKMEDG+ LLLPIIV+E PS++L+AA+RN++I 
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179

Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
           RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239

Query: 237 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLV 296
           A RCKVPIQVN+ +AY++G++V++     ++   SD   +T LD+P  QPC + +EF+LV
Sbjct: 240 AFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQYTRLDRPDDQPCFEAQEFDLV 298

Query: 297 RNMLIAAVEERYRDAAQWRDKLGQLRAKR 325
           RNML+AAVEERY+DAAQ+RD+L   RAK+
Sbjct: 299 RNMLVAAVEERYKDAAQYRDQLFMFRAKK 327

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|B8A8D2|BBD1_ORYSI Bifunctional nuclease 1 OS=Oryza sativa subsp. indica GN=BBD1 PE=3 SV=1

 Score =  318 bits (814), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 170/329 (51%), Positives = 238/329 (72%), Gaps = 6/329 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
           M  + GPV         G L +    +G +++    R    G +G    A +   G F  
Sbjct: 1   MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59

Query: 59  QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
           +++AR   +  V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60  ERHARSGWVWPVCCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119

Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
           DG++LRCV NNP+   L D APH AIVLKMEDG+ LLLPIIV+E PS++L+AA+RN++I 
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179

Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
           RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239

Query: 237 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLV 296
           A RCKVPIQVN+ +AY++G++V++     ++   SD    T LD+P  QPC + +EF+LV
Sbjct: 240 AFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQCTRLDRPDDQPCFEAQEFDLV 298

Query: 297 RNMLIAAVEERYRDAAQWRDKLGQLRAKR 325
           RNML+AAVEERY+DAAQ+RD+L   RAK+
Sbjct: 299 RNMLVAAVEERYKDAAQYRDQLFMFRAKK 327

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza sativa subsp. indica (taxid: 39946)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q50604|Y1829_MYCTU Uncharacterized protein Rv1829/MT1877 OS=Mycobacterium tuberculosis GN=Rv1829 PE=4 SV=2

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 7/120 (5%)

Query: 139 HPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLV 198
            P ++L+  +G   L PI + +  +  +    + V+  RP  + +++++I  +G+ ++ V
Sbjct: 17  QPVLLLREANGDRYL-PIWIGQSEAAAIALEQQGVEPPRPLTHDLIRDLIAALGHSLKEV 75

Query: 199 RVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRV 258
           R+       ++A L   +       +    RPSD++ IA+R  VPI V + +    G+ +
Sbjct: 76  RIVDLQEGTFYADLIFDR------NIKVSARPSDSVAIALRVGVPIYVEEAVLAQAGLLI 129

Mycobacterium tuberculosis (taxid: 1773)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
224062099	326	predicted protein [Populus trichocarpa]	0.984	1.0	0.830	1e-162
255538728	327	conserved hypothetical protein [Ricinus	0.987	1.0	0.833	1e-159
359492154	327	PREDICTED: uncharacterized protein LOC10	0.981	0.993	0.815	1e-158
302142539	355	unnamed protein product [Vitis vinifera]	0.981	0.915	0.815	1e-158
224085706	328	predicted protein [Populus trichocarpa]	0.987	0.996	0.804	1e-155
449511603	327	PREDICTED: bifunctional nuclease 1-like	0.984	0.996	0.764	1e-148
449460235	327	PREDICTED: bifunctional nuclease 1-like	0.984	0.996	0.761	1e-148
255635435	328	unknown [Glycine max]	0.978	0.987	0.759	1e-143
297842281	324	hypothetical protein ARALYDRAFT_476684 [	0.966	0.987	0.746	1e-141
15222221	325	bifunctional nuclease in basal defense r	0.972	0.990	0.748	1e-141

>gi|224062099|ref|XP_002300754.1| predicted protein [Populus trichocarpa] gi|222842480|gb|EEE80027.1| predicted protein [Populus trichocarpa]

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 275/331 (83%), Positives = 299/331 (90%), Gaps = 5/331 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           M SLQGPV CP VRA+Q G +   P TGP++KAR  RSELWGFKG    KTKVG+ +RQ 
Sbjct: 1   MVSLQGPVICPTVRAKQAGKH-AFPMTGPLVKARLVRSELWGFKGY---KTKVGLTSRQL 56

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
            AR+C  VQC+ SSSS+GNGS AENFNENDED+VNSSVVEAVEVKSG+DGF+IKMRDGRH
Sbjct: 57  KARRCNTVQCSLSSSSDGNGSTAENFNENDEDYVNSSVVEAVEVKSGSDGFVIKMRDGRH 116

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNVQIARPT+
Sbjct: 117 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTM 176

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVK+M+EKMG+EV+LVRVTKRVHEAYFAQLYLTK+GNETECVSFDLRPSDAINIAVRC
Sbjct: 177 YQVVKDMVEKMGFEVKLVRVTKRVHEAYFAQLYLTKIGNETECVSFDLRPSDAINIAVRC 236

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 300
           KVPIQVNKYLAYSDGMRVIESGK    SP SDG+LFTELD+P+GQPCLDTKEFNLVRNM 
Sbjct: 237 KVPIQVNKYLAYSDGMRVIESGK-PIQSPASDGILFTELDRPTGQPCLDTKEFNLVRNMF 295

Query: 301 IAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 331
            AA EERY DAAQWRDKLGQ RAKRNL+K+T
Sbjct: 296 TAAFEERYGDAAQWRDKLGQFRAKRNLKKYT 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538728|ref|XP_002510429.1| conserved hypothetical protein [Ricinus communis] gi|223551130|gb|EEF52616.1| conserved hypothetical protein [Ricinus communis]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 276/331 (83%), Positives = 298/331 (90%), Gaps = 4/331 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           M SLQGPV CPAVRA+Q G Y T+P   P+ KAR  RS LW FKG++  KTK+  F+ QQ
Sbjct: 1   MTSLQGPVICPAVRAKQAGTY-TLPLNVPLFKARLVRSGLWRFKGISDYKTKLTGFSPQQ 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
            AR   + QC  SSSSNGNG+ AENFN NDED+V+SSVVEAVEVKSGADGFMIKMRDGRH
Sbjct: 60  -ARNTTL-QCCLSSSSNGNGNTAENFNVNDEDYVHSSVVEAVEVKSGADGFMIKMRDGRH 117

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           +RCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNVQIARPTL
Sbjct: 118 VRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTL 177

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNET+CVSFDLRPSDAINIAVRC
Sbjct: 178 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETQCVSFDLRPSDAINIAVRC 237

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 300
           KVPIQVNKYLAYSDGMRVIESGK+ THSPGSDGLLFTELD+P+GQPCLDTKEFNLV N++
Sbjct: 238 KVPIQVNKYLAYSDGMRVIESGKI-THSPGSDGLLFTELDRPTGQPCLDTKEFNLVSNLM 296

Query: 301 IAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 331
            A VEERY+DAAQWRD LGQ RAKRNL+K+T
Sbjct: 297 NAVVEERYQDAAQWRDMLGQFRAKRNLKKYT 327

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492154|ref|XP_003634371.1| PREDICTED: uncharacterized protein LOC100855103 [Vitis vinifera]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 266/326 (81%), Positives = 293/326 (89%), Gaps = 1/326 (0%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MG+LQGPV CP VRA++ G+Y T+P + P+ K + FRS  WGF+G    +TK G    Q 
Sbjct: 1   MGTLQGPVICPTVRAKEAGVY-TLPVSLPLKKTKIFRSGFWGFRGNCGGRTKAGSVPHQL 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
           + RKCK +QC+FSSSS+GNGSMAENFNENDED+VNSSVVEAVEVKSGADGFMIKMRDGRH
Sbjct: 60  HTRKCKTLQCSFSSSSDGNGSMAENFNENDEDYVNSSVVEAVEVKSGADGFMIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNPQGGH+PDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNVQIARPTL
Sbjct: 120 LRCVHNNPQGGHMPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTL 179

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQV+KEMI+KMGY V+LVRVTKRVHEAYFAQLYLTKVGNE E VSFDLRPSDAINIAVRC
Sbjct: 180 YQVMKEMIDKMGYAVKLVRVTKRVHEAYFAQLYLTKVGNEKESVSFDLRPSDAINIAVRC 239

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 300
           KVPIQVNKYLAYSDGMRVIES K+S  +  SDGLLFTELD+PSGQPC++TKEF+LVRNML
Sbjct: 240 KVPIQVNKYLAYSDGMRVIESAKVSVQASSSDGLLFTELDRPSGQPCIETKEFDLVRNML 299

Query: 301 IAAVEERYRDAAQWRDKLGQLRAKRN 326
           IAAVEERYRDAAQWRDKL Q R+KRN
Sbjct: 300 IAAVEERYRDAAQWRDKLTQFRSKRN 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142539|emb|CBI19742.3| unnamed protein product [Vitis vinifera]

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 266/326 (81%), Positives = 293/326 (89%), Gaps = 1/326 (0%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MG+LQGPV CP VRA++ G+Y T+P + P+ K + FRS  WGF+G    +TK G    Q 
Sbjct: 29  MGTLQGPVICPTVRAKEAGVY-TLPVSLPLKKTKIFRSGFWGFRGNCGGRTKAGSVPHQL 87

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
           + RKCK +QC+FSSSS+GNGSMAENFNENDED+VNSSVVEAVEVKSGADGFMIKMRDGRH
Sbjct: 88  HTRKCKTLQCSFSSSSDGNGSMAENFNENDEDYVNSSVVEAVEVKSGADGFMIKMRDGRH 147

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNPQGGH+PDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNVQIARPTL
Sbjct: 148 LRCVHNNPQGGHMPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTL 207

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQV+KEMI+KMGY V+LVRVTKRVHEAYFAQLYLTKVGNE E VSFDLRPSDAINIAVRC
Sbjct: 208 YQVMKEMIDKMGYAVKLVRVTKRVHEAYFAQLYLTKVGNEKESVSFDLRPSDAINIAVRC 267

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 300
           KVPIQVNKYLAYSDGMRVIES K+S  +  SDGLLFTELD+PSGQPC++TKEF+LVRNML
Sbjct: 268 KVPIQVNKYLAYSDGMRVIESAKVSVQASSSDGLLFTELDRPSGQPCIETKEFDLVRNML 327

Query: 301 IAAVEERYRDAAQWRDKLGQLRAKRN 326
           IAAVEERYRDAAQWRDKL Q R+KRN
Sbjct: 328 IAAVEERYRDAAQWRDKLTQFRSKRN 353

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085706|ref|XP_002307674.1| predicted protein [Populus trichocarpa] gi|222857123|gb|EEE94670.1| predicted protein [Populus trichocarpa]

 Score =  552 bits (1422), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 267/332 (80%), Positives = 296/332 (89%), Gaps = 5/332 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MGSLQGPV  PAVRA+Q G Y + P TGP++K    RSEL GFKGL+  K+KV + +RQ 
Sbjct: 1   MGSLQGPVIYPAVRAKQAGTY-SFPMTGPLVKGWLIRSELRGFKGLSGCKSKVVLTSRQL 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
            AR+C +VQC+ SSSS+GNGS AENFNEN  D+VNSSVVEAVEVKSG+DGF+IKMRDGRH
Sbjct: 60  KARRCSVVQCSLSSSSDGNGSTAENFNENHGDYVNSSVVEAVEVKSGSDGFVIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNPQGGHLPD APHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNVQIARPT+
Sbjct: 120 LRCVHNNPQGGHLPDNAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTM 179

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVKEM+EKMGYEV+LVRVTKRVHEAYFAQLYLTK+GNETECVSFDLRPSDAINIAVRC
Sbjct: 180 YQVVKEMVEKMGYEVKLVRVTKRVHEAYFAQLYLTKIGNETECVSFDLRPSDAINIAVRC 239

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHS-PGSDGLLFTELDKPSGQPCLDTKEFNLVRNM 299
           KVPIQVNKYLAYSDGMRV+    L  +S P  +GLLFTELD+P+GQPCLDTKEF+LVRNM
Sbjct: 240 KVPIQVNKYLAYSDGMRVMN---LKANSVPCFNGLLFTELDRPTGQPCLDTKEFDLVRNM 296

Query: 300 LIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 331
           L AA+EERY DAAQWRDKLGQ RAKRNL+K+T
Sbjct: 297 LTAAIEERYGDAAQWRDKLGQFRAKRNLKKYT 328

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511603|ref|XP_004164003.1| PREDICTED: bifunctional nuclease 1-like [Cucumis sativus]

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 250/327 (76%), Positives = 287/327 (87%), Gaps = 1/327 (0%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MGSLQGPV CP + A+Q G + ++P    +M   F R +LWGF G+  +  K+   + ++
Sbjct: 1   MGSLQGPVVCPTICAKQAG-FCSLPINRSLMAFSFRRGQLWGFTGINGLNAKLPAISLKR 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
             RKCK ++C+FSSSS+ NGS AENFNE +E++V SSVVEAVEVKSGADGF+IKMRDGRH
Sbjct: 60  CTRKCKTLRCSFSSSSDDNGSTAENFNEKNEEYVESSVVEAVEVKSGADGFVIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNP GGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNV IARPT+
Sbjct: 120 LRCVHNNPHGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVPIARPTM 179

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVKEMI+KMGYEV+LVRVTKRVHEAYFAQLYL+K+G ET+C+SFDLRPSDAINIAVRC
Sbjct: 180 YQVVKEMIDKMGYEVKLVRVTKRVHEAYFAQLYLSKIGCETDCLSFDLRPSDAINIAVRC 239

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 300
           +VPIQVNKYLAYSDGMRV+ESGKLST +  +DGLLFTELD+PSGQPC++ KEFNLVRNML
Sbjct: 240 QVPIQVNKYLAYSDGMRVVESGKLSTQALATDGLLFTELDRPSGQPCVEAKEFNLVRNML 299

Query: 301 IAAVEERYRDAAQWRDKLGQLRAKRNL 327
           IAAVEERYRDAAQWRDKL  LRA+RNL
Sbjct: 300 IAAVEERYRDAAQWRDKLNLLRARRNL 326

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460235|ref|XP_004147851.1| PREDICTED: bifunctional nuclease 1-like [Cucumis sativus]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 249/327 (76%), Positives = 287/327 (87%), Gaps = 1/327 (0%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MGSLQGPV CP + A+Q G + ++P    +M   F R +LWGF G+  +  K+   + ++
Sbjct: 1   MGSLQGPVVCPTICAKQAG-FCSLPINRSLMAFSFRRGQLWGFTGINGLNAKLPAISLKR 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
             RKCK ++C+FSSSS+ NGS AENFNE +E++V SSVVEAVEVKSGADGF+IKMRDGRH
Sbjct: 60  CTRKCKTLRCSFSSSSDDNGSTAENFNEKNEEYVESSVVEAVEVKSGADGFVIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNP GGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNV IARPT+
Sbjct: 120 LRCVHNNPHGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVPIARPTM 179

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVKEMI+KMGYEV+LVRVTKRVHEAYFAQLYL+K+G ET+C+SFDLRPSDAINIAVRC
Sbjct: 180 YQVVKEMIDKMGYEVKLVRVTKRVHEAYFAQLYLSKIGCETDCLSFDLRPSDAINIAVRC 239

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 300
           +VPIQVNKYLA+SDGMRV+ESGKLST +  +DGLLFTELD+PSGQPC++ KEFNLVRNML
Sbjct: 240 QVPIQVNKYLAFSDGMRVVESGKLSTQALATDGLLFTELDRPSGQPCVEAKEFNLVRNML 299

Query: 301 IAAVEERYRDAAQWRDKLGQLRAKRNL 327
           IAAVEERYRDAAQWRDKL  LRA+RNL
Sbjct: 300 IAAVEERYRDAAQWRDKLNLLRARRNL 326

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635435|gb|ACU18070.1| unknown [Glycine max]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 250/329 (75%), Positives = 278/329 (84%), Gaps = 5/329 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPV-MKARFFRSELWGFKGLTAVKTKVGVFTRQ 59
           M S+QGPV CP+VRA+Q G + ++P  G V M  R  RSE WG  G    K K G  +  
Sbjct: 1   MSSVQGPVVCPSVRAKQVG-FCSIPMIGAVKMNVRRIRSEFWGLNG---AKAKPGFLSCH 56

Query: 60  QNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGR 119
            N RKCK V CTF+S SN +GS A+NFNE DED+V SSV+EAVEVKSGADGF+IKMRDGR
Sbjct: 57  INTRKCKTVHCTFNSPSNDSGSTADNFNEKDEDYVISSVIEAVEVKSGADGFIIKMRDGR 116

Query: 120 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPT 179
           HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNV IARPT
Sbjct: 117 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAIRNVPIARPT 176

Query: 180 LYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVR 239
           LYQVVKEMI+KMGYEV+ VRVT+RVHEAYFAQLYLTKVGN+ E VSFDLRPSDAINIAVR
Sbjct: 177 LYQVVKEMIDKMGYEVKFVRVTRRVHEAYFAQLYLTKVGNDAEYVSFDLRPSDAINIAVR 236

Query: 240 CKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNM 299
           CKVPIQVNKYLAYSDGMRVIESGKLST  PG DG LFTE+D+PSGQPC +T EFNL+ NM
Sbjct: 237 CKVPIQVNKYLAYSDGMRVIESGKLSTQFPGMDGRLFTEMDRPSGQPCAETTEFNLLHNM 296

Query: 300 LIAAVEERYRDAAQWRDKLGQLRAKRNLR 328
           L A VEERY+DAA +RD+L QLRA +N++
Sbjct: 297 LKAVVEERYKDAALFRDQLNQLRAGKNMK 325

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842281|ref|XP_002889022.1| hypothetical protein ARALYDRAFT_476684 [Arabidopsis lyrata subsp. lyrata] gi|297334863|gb|EFH65281.1| hypothetical protein ARALYDRAFT_476684 [Arabidopsis lyrata subsp. lyrata]

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 250/335 (74%), Positives = 279/335 (83%), Gaps = 15/335 (4%)

Query: 1   MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWGFK--GLTAVKTKVGVFT 57
           M SLQ PV CPA+R RQ G   + V  TG   + +F+ +   GFK  G T +        
Sbjct: 1   MRSLQAPVVCPAIRPRQVGACASLVNYTGLKPRRQFWGNRTKGFKSQGTTTI-------- 52

Query: 58  RQQNARKC-KIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
                R C K ++C FSS S+GNGS AENFNENDE++VNSSVVEAVEVKSGADGFM+KMR
Sbjct: 53  ---TLRLCDKSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMR 109

Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
           DGR LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIA
Sbjct: 110 DGRQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIA 169

Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
           RPT+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQLYL+KVGN +ECVSFDLRPSDAINI
Sbjct: 170 RPTMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLYLSKVGNASECVSFDLRPSDAINI 229

Query: 237 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLV 296
           AVRCK+PIQVNKYLAYSDGMRVIESGK+ST +P SDGLLFTE D+P+GQ CLDTKEFN++
Sbjct: 230 AVRCKIPIQVNKYLAYSDGMRVIESGKISTPTPASDGLLFTEQDRPNGQACLDTKEFNIL 289

Query: 297 RNMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 331
             M+ A  EERY +AA+WRDKLGQ RAKRNLRK+T
Sbjct: 290 SKMMQAVDEERYDEAAEWRDKLGQFRAKRNLRKYT 324

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222221|ref|NP_177671.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana] gi|30699096|ref|NP_849890.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana] gi|30699098|ref|NP_849891.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana] gi|75172895|sp|Q9FWS6.1|BBD1_ARATH RecName: Full=Bifunctional nuclease 1; Short=AtBBD1 gi|10120446|gb|AAG13071.1|AC023754_9 Unknown protein [Arabidopsis thaliana] gi|15809929|gb|AAL06892.1| At1g75380/F1B16_15 [Arabidopsis thaliana] gi|17978881|gb|AAL47412.1| At1g75380/F1B16_15 [Arabidopsis thaliana] gi|21593016|gb|AAM64965.1| wound-responsive protein, putative [Arabidopsis thaliana] gi|332197588|gb|AEE35709.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana] gi|332197589|gb|AEE35710.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana] gi|332197590|gb|AEE35711.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana]

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 250/334 (74%), Positives = 281/334 (84%), Gaps = 12/334 (3%)

Query: 1   MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWG--FKGLTAVKTKVGVFT 57
           M S+Q PV CPA+R RQ G   + V  TG  +K R   S+ WG   KG+ +  T   +  
Sbjct: 1   MRSVQAPVVCPAIRPRQVGACASLVNYTG--LKPR---SQFWGNRTKGVKSQGTTTTITL 55

Query: 58  RQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRD 117
           R  N    K ++C FSS S+GNGS AENFNENDE++VNSSVVEAVEVKSGADGFM+KMRD
Sbjct: 56  RLCN----KSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRD 111

Query: 118 GRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIAR 177
           GR LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIAR
Sbjct: 112 GRQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIAR 171

Query: 178 PTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIA 237
           PT+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQL+L+KVGN +ECVSFDLRPSDAINIA
Sbjct: 172 PTMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIA 231

Query: 238 VRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVR 297
           VRCK+PIQVNKYLAYSDGMRVIESGK+ST +P SDGLLFTE D+P+GQ CLDTKEFN++ 
Sbjct: 232 VRCKIPIQVNKYLAYSDGMRVIESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNILS 291

Query: 298 NMLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 331
            M+ A  EERY +AA+WRDKLGQ RAKRNLRK+T
Sbjct: 292 KMMQAVDEERYDEAAEWRDKLGQFRAKRNLRKYT 325

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
TAIR|locus:2018422	325	BBD1 "AT1G75380" [Arabidopsis	0.975	0.993	0.729	8.3e-122
TAIR|locus:2013164	329	BBD2 "bifunctional nuclease in	0.993	1.0	0.685	3e-117
TAIR|locus:2156842	340	AT5G66050 [Arabidopsis thalian	0.570	0.555	0.370	2.2e-25
UNIPROTKB|Q50604	164	MT1877 "Uncharacterized protei	0.413	0.835	0.251	3.9e-05

TAIR|locus:2018422 BBD1 "AT1G75380" [Arabidopsis thaliana (taxid:3702)]

 Score = 1198 (426.8 bits), Expect = 8.3e-122, P = 8.3e-122
 Identities = 243/333 (72%), Positives = 272/333 (81%)

Query:     1 MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQ 59
             M S+Q PV CPA+R RQ G   + V  TG  +K R   S+ WG +    VK++ G  T  
Sbjct:     1 MRSVQAPVVCPAIRPRQVGACASLVNYTG--LKPR---SQFWGNR-TKGVKSQ-GT-TTT 52

Query:    60 QNARKC-KIVQCTFSSSSNGNGSMAXXXXXXXXXXVNSSVVEAVEVKSGADGFMIKMRDG 118
                R C K ++C FSS S+GNGS A          VNSSVVEAVEVKSGADGFM+KMRDG
Sbjct:    53 ITLRLCNKSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRDG 112

Query:   119 RHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARP 178
             R LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIARP
Sbjct:   113 RQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARP 172

Query:   179 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAV 238
             T+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQL+L+KVGN +ECVSFDLRPSDAINIAV
Sbjct:   173 TMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIAV 232

Query:   239 RCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRN 298
             RCK+PIQVNKYLAYSDGMRVIESGK+ST +P SDGLLFTE D+P+GQ CLDTKEFN++  
Sbjct:   233 RCKIPIQVNKYLAYSDGMRVIESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNILSK 292

Query:   299 MLIAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 331
             M+ A  EERY +AA+WRDKLGQ RAKRNLRK+T
Sbjct:   293 MMQAVDEERYDEAAEWRDKLGQFRAKRNLRKYT 325

GO:0004518 "nuclease activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0031063 "regulation of histone deacetylation" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA;IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IGI

TAIR|locus:2013164 BBD2 "bifunctional nuclease in basal defense response 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1155 (411.6 bits), Expect = 3.0e-117, P = 3.0e-117
 Identities = 227/331 (68%), Positives = 267/331 (80%)

Query:     1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
             M SLQ PV CP+VR RQ G+   + +   V K R  R + WG +     K++      + 
Sbjct:     1 MRSLQAPVVCPSVRPRQLGVSALLVNCS-VSKTRSLRKQFWGNQTKND-KSQAATVNLRL 58

Query:    61 NARKCKIVQCTFSSSSNGNGSMAXXXXXXXXXXVNSSVVEAVEVKSGADGFMIKMRDGRH 120
             + R+ K ++C FSS S+G GS A          V SSV+EAVEVKSG DGFM+KM+DGR 
Sbjct:    59 HLRRYKSIKCLFSSHSDGTGSTAENFNENDEDYVKSSVLEAVEVKSGPDGFMVKMKDGRQ 118

Query:   121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
             LRCVHNNPQGG+LP+YAPH AIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIARPT+
Sbjct:   119 LRCVHNNPQGGNLPNYAPHSAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARPTM 178

Query:   181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
             YQVVK+M++KMGYEVRLVRVT RVHEAYFA+LYL+KVG++++CVSFDLRPSDAINIAVRC
Sbjct:   179 YQVVKDMVDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIAVRC 238

Query:   241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNML 300
             KVPIQVNKYLAYSDGMRVI+SGKLS  +P SDGLLFTELD+P+GQPC DTKEF+LVRNM+
Sbjct:   239 KVPIQVNKYLAYSDGMRVIDSGKLSKQTPASDGLLFTELDRPNGQPCFDTKEFDLVRNMM 298

Query:   301 IAAVEERYRDAAQWRDKLGQLRAKRNLRKFT 331
              A  EERY +AA+WRDKLG+ +AKR LRK+T
Sbjct:   299 QAVDEERYDEAAEWRDKLGKFQAKRKLRKYT 329

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0006289 "nucleotide-excision repair" evidence=IEA

GO:0009611 "response to wounding" evidence=ISS

TAIR|locus:2156842 AT5G66050 [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 73/197 (37%), Positives = 110/197 (55%)

Query:   128 PQG-GHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMP-SVLLMAAMRNVQIARPTLYQVVK 185
             P G G L  +   P I LK+      LLP+IV +     LL   ++      P  +Q V 
Sbjct:   132 PIGLGFLRQFK-QPTIFLKISCDGDYLLPVIVGDAAVEKLLDVPLQGHTEECPDQFQFVS 190

Query:   186 EMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQ 245
              +++K+GYEV++V++T R+   Y+A L L K G + E +  D RPSDAIN+A  C+ PI 
Sbjct:   191 AVVDKLGYEVKMVKLTGRIVNTYYASLCLGKPG-DIEAICIDSRPSDAINVARACQAPIY 249

Query:   246 VNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDKPSGQPCLDTKEFNLVRNMLIAAVE 305
             VNK +   + +++   G+  +  P  + +L +  D P   P   ++E  LVRNM +A+ E
Sbjct:   250 VNKAIVLEEAIKIGYGGRPQSAKPVFNVILDSAPDGPD--PL--SEELKLVRNMDLASKE 305

Query:   306 ERYRDAAQWRDKLGQLR 322
             ERY DAA WRD+L  L+
Sbjct:   306 ERYIDAAMWRDRLKNLQ 322

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006289 "nucleotide-excision repair" evidence=IEA

UNIPROTKB|Q50604 MT1877 "Uncharacterized protein Rv1829/MT1877" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 113 (44.8 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 37/147 (25%), Positives = 73/147 (49%)

Query:   140 PAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVR 199
             P ++L+  +G   L PI + +  +  +    + V+  RP  + +++++I  +G+ ++ VR
Sbjct:    18 PVLLLREANGDRYL-PIWIGQSEAAAIALEQQGVEPPRPLTHDLIRDLIAALGHSLKEVR 76

Query:   200 VTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVI 259
             +       ++A L   +  N    +    RPSD++ IA+R  VPI V + +    G+ + 
Sbjct:    77 IVDLQEGTFYADLIFDR--N----IKVSARPSDSVAIALRVGVPIYVEEAVLAQAGLLIP 130

Query:   260 -ESGKLSTHSPGSDGL-LFTE-LDKPS 283
              ES + +T +   D +  F E LD  S
Sbjct:   131 DESDEEATTAVREDEVEKFKEFLDSVS 157


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      331       321   0.00085  116 3  11 22  0.37    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  209 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.60u 0.11s 22.71t   Elapsed:  00:00:01
  Total cpu time:  22.61u 0.11s 22.72t   Elapsed:  00:00:01
  Start:  Sat May 11 01:14:07 2013   End:  Sat May 11 01:14:08 2013

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93VH2	BBD2_ARATH	3, ., 1, ., -, ., -	0.7129	0.9939	1.0	no	no
B8A8D2	BBD1_ORYSI	3, ., 1, ., -, ., -	0.5167	0.9758	0.9758	N/A	no
Q9FWS6	BBD1_ARATH	3, ., 1, ., -, ., -	0.7485	0.9728	0.9907	yes	no
Q6YZM6	BBD2_ORYSJ	3, ., 1, ., -, ., -	0.5950	0.9577	0.9753	yes	no
Q09LL3	BBD_ORYMI	3, ., 1, ., -, ., -	0.5167	0.9758	0.9758	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	331
pfam02577	132	pfam02577, DNase-RNase, Bifunctional nuclease	4e-17
COG1259	151	COG1259, COG1259, Uncharacterized conserved protei	4e-14

>gnl|CDD|217117 pfam02577, DNase-RNase, Bifunctional nuclease

 Score = 76.4 bits (189), Expect = 4e-17
 Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 5/112 (4%)

Query: 137 APHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVR 196
           +  P ++L+ EDG   +LPI +    +  +  A+  V+  RP  + ++K+++E +G +V 
Sbjct: 12  SGAPVVLLRDEDG-ERVLPIWIGPAEAQAIALALEGVEPPRPLTHDLLKDVLEALGAKVE 70

Query: 197 LVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNK 248
            V +       ++A+L L   G E      D RPSDAI +A+R   PI V +
Sbjct: 71  RVVIDDLKDGTFYARLVLRDGGEEE----IDARPSDAIALALRTGAPIYVTE 118

This family is a bifunctional nuclease, with both DNase and RNase activity. It forms a wedge-shaped dimer, with each monomer being triangular in shape. A large groove at the thick end of the wedge contains a possible active site. Length = 132

>gnl|CDD|224179 COG1259, COG1259, Uncharacterized conserved protein [Function unknown]

 Score = 68.5 bits (168), Expect = 4e-14
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 5/116 (4%)

Query: 135 DYAPH--PAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMG 192
                  P +VL +E G   +LPI +    ++ +  A+  V+  RP  + ++ E+ E++G
Sbjct: 13  FVPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALEGVEPPRPLTHDLLVEIFEELG 72

Query: 193 YEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNK 248
             V  V +   +   Y+A L L +   + +    D RPSDAI +A+R   PI V +
Sbjct: 73  ARVEKVVIDDLIDNTYYATLILEQDDGKIQ---IDARPSDAIALALRVGAPIYVAE 125

Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	331
PF02577	135	DNase-RNase: Bifunctional nuclease; InterPro: IPR0	100.0
COG1259	151	Uncharacterized conserved protein [Function unknow	100.0
PF02151	36	UVR: UvrB/uvrC motif; InterPro: IPR001943 During t	98.21
COG3880	176	Modulator of heat shock repressor CtsR, McsA [Sign	98.21
PRK05298	652	excinuclease ABC subunit B; Provisional	94.67
COG0556	663	UvrB Helicase subunit of the DNA excision repair c	94.57
TIGR00631	655	uvrb excinuclease ABC, B subunit. This family is b	93.89
PRK00558	598	uvrC excinuclease ABC subunit C; Validated	93.29
PRK07883	557	hypothetical protein; Validated	93.04
PRK12306	519	uvrC excinuclease ABC subunit C; Reviewed	92.25
PRK14666	694	uvrC excinuclease ABC subunit C; Provisional	91.92
PRK14668	577	uvrC excinuclease ABC subunit C; Provisional	91.58
TIGR00194	574	uvrC excinuclease ABC, C subunit. This family cons	91.47
PRK14672	691	uvrC excinuclease ABC subunit C; Provisional	91.31
PRK14667	567	uvrC excinuclease ABC subunit C; Provisional	91.3
PRK14670	574	uvrC excinuclease ABC subunit C; Provisional	91.17
PRK14671	621	uvrC excinuclease ABC subunit C; Provisional	91.0
PRK14669	624	uvrC excinuclease ABC subunit C; Provisional	90.99
COG0322	581	UvrC Nuclease subunit of the excinuclease complex	88.89

>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function

Probab=100.00  E-value=4.3e-35  Score=251.46  Aligned_cols=125  Identities=29%  Similarity=0.473  Sum_probs=104.9

Q ss_pred             cCCCCCCCcEEEEEeeCCCceEEEEEEChHHHHHHHHHHcccCCCCCChhHHHHHHHHHhCCeEeEEEEEeeECCEEEEE
Q 020092          132 HLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQ  211 (331)
Q Consensus       132 aLd~~a~~pvIVL~~edg~~r~LPI~Ig~~EA~aI~~aL~~~~~~RPlThDLL~eiLe~lg~~v~~V~I~~l~dGvFyA~  211 (331)
                      .++...++|++||++++++ +.||||||..||.+|+.++++.+++||+|||||.++++++|.++.+|+|++++||+|||+
T Consensus         7 ~~~~~~~~~vvlL~~~~~~-~~lpI~i~~~ea~~i~~~~~~~~~~RP~thdLl~~~l~~lg~~v~~V~I~~~~dg~f~A~   85 (135)
T PF02577_consen    7 SVDEPSGQPVVLLREEDGD-RVLPIWIGAFEAQAIALALEGEKPPRPLTHDLLSDLLEALGAEVERVVIDDLEDGVFYAR   85 (135)
T ss_dssp             EEETTTTEEEEEEEETTSS-EEEEEE--HHHHHHHHHHHCT---SS--HHHHHHHHHHHTTEEEEEEEEEEEETTEEEEE
T ss_pred             EEcCCCCceEEEEEEcCCC-EEEEEEECHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEEECCEEEEE
Confidence            3445567899999999876 899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEehhhHhhcCeeeee
Q 020092          212 LYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE  260 (331)
Q Consensus       212 L~l~~~g~~~e~~~IDaRPSDAIaLAlR~k~PIyV~eeVl~~agi~v~e  260 (331)
                      |++.+++   ++.++|+||||||+||+|+++||||+++|++++++++..
T Consensus        86 L~l~~~~---~~~~id~RpSDAiaLAl~~~~PI~v~~~vl~~~~~~~~~  131 (135)
T PF02577_consen   86 LVLRQGG---EEIEIDARPSDAIALALRFGAPIYVSEEVLDEAGVPVEE  131 (135)
T ss_dssp             EEEEETT---TEEEEEE-HHHHHHHHHHHT--EEEEHHHHHHH-EE--H
T ss_pred             EEEecCC---EEEEEECcHhHHHHHHHHhCCCEEEeHHHHhhcCCCCch
Confidence            9999766   789999999999999999999999999999999999874

The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.

>COG1259 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=5.4e-33  Score=243.24  Aligned_cols=126  Identities=26%  Similarity=0.446  Sum_probs=115.0

Q ss_pred             cCCCCCCCcEEEEEeeCCCceEEEEEEChHHHHHHHHHHcccCCCCCChhHHHHHHHHHhCCeEeEEEEEeeECCEEEEE
Q 020092          132 HLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQ  211 (331)
Q Consensus       132 aLd~~a~~pvIVL~~edg~~r~LPI~Ig~~EA~aI~~aL~~~~~~RPlThDLL~eiLe~lg~~v~~V~I~~l~dGvFyA~  211 (331)
                      ++..-...|++++...+++++.||||||..||.+|+.++++..++||+||||+.++++.++.+|.+|+|++++||||||+
T Consensus        12 ~~~~~~~~~~~v~~~~~~~~~~lPI~Ig~~ea~si~~~l~~~~p~RP~tHdll~~i~~~l~~~v~kVvI~d~~d~tyyA~   91 (151)
T COG1259          12 FFVPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALEGVEPPRPLTHDLLVEIFEELGARVEKVVIDDLIDNTYYAT   91 (151)
T ss_pred             EEecccCCceEEEEEEcCCCeEEEEEEeHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhCCcEEEEEEEEeccCeEEEE
Confidence            44445677866666677777899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEehhhHhhcCeeeee
Q 020092          212 LYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE  260 (331)
Q Consensus       212 L~l~~~g~~~e~~~IDaRPSDAIaLAlR~k~PIyV~eeVl~~agi~v~e  260 (331)
                      |++++++   ....+||||||||+||+|.++||||.|+|+++++++..+
T Consensus        92 L~~~~~~---~~~~iDaRPSDaI~LAlr~~~PI~V~e~v~~~a~~~~~~  137 (151)
T COG1259          92 LILEQDD---GKIQIDARPSDAIALALRVGAPIYVAEEVLDEAEIEIED  137 (151)
T ss_pred             EEEEcCC---ceEEEecccchHHHHHHHhCCCEEEehhhhhhhcCcCcc
Confidence            9999887   469999999999999999999999999999999888764

>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []

Probab=98.21  E-value=2.4e-06  Score=58.34  Aligned_cols=34  Identities=29%  Similarity=0.449  Sum_probs=29.7

Q ss_pred             hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020092          291 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK  324 (331)
Q Consensus       291 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~  324 (331)
                      ..+..|+..|..|++ ++||+||.|||+|..|+++
T Consensus         2 ~~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~q   36 (36)
T PF02151_consen    2 KLIKELEEKMEEAVENEDFEKAARLRDQIKALKKQ   36 (36)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcC
Confidence            457889999999999 9999999999999999864

UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.

>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]

Probab=98.21  E-value=1.6e-06  Score=77.91  Aligned_cols=39  Identities=26%  Similarity=0.416  Sum_probs=35.4

Q ss_pred             cchhhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhhc
Q 020092          288 LDTKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKRN  326 (331)
Q Consensus       288 ~~~~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~~  326 (331)
                      ..+.+|.+|++.|+++|+ |+||+||.+||||+.|+.+..
T Consensus       133 ~~~~~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k~~  172 (176)
T COG3880         133 NPKRKIIALKEALQDLIEREEFEEAAVIRDQIRALKAKNG  172 (176)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            357899999999999999 999999999999999997743

>PRK05298 excinuclease ABC subunit B; Provisional

Probab=94.67  E-value=0.046  Score=58.35  Aligned_cols=36  Identities=19%  Similarity=0.315  Sum_probs=31.4

Q ss_pred             hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhhc
Q 020092          291 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKRN  326 (331)
Q Consensus       291 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~~  326 (331)
                      ..++.|+++|++|.+ ++||+||++||+|+.|++...
T Consensus       613 ~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~~~~~  649 (652)
T PRK05298        613 KLIKELEKQMKEAAKNLEFEEAARLRDEIKELKEELL  649 (652)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence            456779999999988 999999999999999987654

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]

Probab=94.57  E-value=0.049  Score=57.47  Aligned_cols=38  Identities=18%  Similarity=0.261  Sum_probs=31.3

Q ss_pred             chhhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhhc
Q 020092          289 DTKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKRN  326 (331)
Q Consensus       289 ~~~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~~  326 (331)
                      ..+.++.|+++|.+|.+ -+||+||++||+|++|++...
T Consensus       622 ~~~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~~~~  660 (663)
T COG0556         622 LEKLIKKLEKEMKEAAKNLEFEEAARLRDEIKELKEELL  660 (663)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence            34567778887777776 999999999999999997653

>TIGR00631 uvrb excinuclease ABC, B subunit

Probab=93.89  E-value=0.057  Score=57.93  Aligned_cols=32  Identities=22%  Similarity=0.353  Sum_probs=27.4

Q ss_pred             hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHH
Q 020092          291 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLR  322 (331)
Q Consensus       291 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~  322 (331)
                      ..++.|+++|++|.+ ++||+||++||+|+.|+
T Consensus       623 ~~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L~  655 (655)
T TIGR00631       623 KLIKQLEKEMKQAARNLEFEEAARLRDEILELK  655 (655)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            345678888888887 99999999999999874

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)

>PRK00558 uvrC excinuclease ABC subunit C; Validated

Probab=93.29  E-value=0.1  Score=55.49  Aligned_cols=35  Identities=23%  Similarity=0.379  Sum_probs=30.0

Q ss_pred             hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhh
Q 020092          291 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR  325 (331)
Q Consensus       291 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~  325 (331)
                      .-++.|++.|++|.+ ++||+||.+||+|..|++-.
T Consensus       202 ~~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~~~~  237 (598)
T PRK00558        202 EVLKELEEKMEEASENLEFERAARYRDQIQALRRVQ  237 (598)
T ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence            346778888888887 99999999999999998643

>PRK07883 hypothetical protein; Validated

Probab=93.04  E-value=0.11  Score=54.57  Aligned_cols=32  Identities=28%  Similarity=0.419  Sum_probs=28.1

Q ss_pred             hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020092          292 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA  323 (331)
Q Consensus       292 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~  323 (331)
                      -++.|++.|++|-+ .+||+||++||+|..++.
T Consensus       407 ~~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~  439 (557)
T PRK07883        407 VLAALRARIDRLAAAERFEEAARLRDRLAALLR  439 (557)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            35778888888887 999999999999999985

>PRK12306 uvrC excinuclease ABC subunit C; Reviewed

Probab=92.25  E-value=0.18  Score=52.92  Aligned_cols=32  Identities=9%  Similarity=0.250  Sum_probs=28.0

Q ss_pred             hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020092          292 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA  323 (331)
Q Consensus       292 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~  323 (331)
                      -++.|++.|++|-+ .+||+||++||.|..++.
T Consensus       193 ~~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~~  225 (519)
T PRK12306        193 LIEKLEEEMAEKAKNQQFERALVIRDEINAIEN  225 (519)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            45778888888887 999999999999999985

>PRK14666 uvrC excinuclease ABC subunit C; Provisional

Probab=91.92  E-value=0.19  Score=54.37  Aligned_cols=34  Identities=24%  Similarity=0.311  Sum_probs=29.2

Q ss_pred             hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020092          291 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK  324 (331)
Q Consensus       291 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~  324 (331)
                      .-++.|++.|++|.+ .+||+||++||+|+.++.-
T Consensus       201 ~l~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~~~  235 (694)
T PRK14666        201 ELVDALRTEMEAASEALEFERAAVLRDQIRAVERT  235 (694)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            345778888888888 9999999999999999753

>PRK14668 uvrC excinuclease ABC subunit C; Provisional

Probab=91.58  E-value=0.24  Score=52.62  Aligned_cols=32  Identities=28%  Similarity=0.398  Sum_probs=28.0

Q ss_pred             hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020092          292 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA  323 (331)
Q Consensus       292 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~  323 (331)
                      -++.|++.|++|-+ .+||+||++||+|+.++.
T Consensus       200 ~~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~~  232 (577)
T PRK14668        200 LADPLRREMEAAAQAQEFERAANLRDRLEAVEA  232 (577)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            35678888888887 999999999999999985

>TIGR00194 uvrC excinuclease ABC, C subunit

Probab=91.47  E-value=0.25  Score=52.48  Aligned_cols=32  Identities=22%  Similarity=0.357  Sum_probs=27.7

Q ss_pred             hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020092          292 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA  323 (331)
Q Consensus       292 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~  323 (331)
                      -++.|++.|++|-+ .+||+||++||+|+.++.
T Consensus       195 ~~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~  227 (574)
T TIGR00194       195 VIKELEQKMEKASENLEFEEAARIRDQIAAVRE  227 (574)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            35668888888887 999999999999999985

This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.

>PRK14672 uvrC excinuclease ABC subunit C; Provisional

Probab=91.31  E-value=0.24  Score=53.56  Aligned_cols=32  Identities=25%  Similarity=0.390  Sum_probs=27.9

Q ss_pred             hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020092          292 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA  323 (331)
Q Consensus       292 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~  323 (331)
                      -++.|++.|++|-+ .+||+||++||+|+.++.
T Consensus       206 ll~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~~  238 (691)
T PRK14672        206 TVARLEKRMKRAVRQEAFEAAARIRDDIQAIRC  238 (691)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            35778888888887 999999999999999984

>PRK14667 uvrC excinuclease ABC subunit C; Provisional

Probab=91.30  E-value=0.25  Score=52.44  Aligned_cols=34  Identities=15%  Similarity=0.111  Sum_probs=28.6

Q ss_pred             hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020092          291 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK  324 (331)
Q Consensus       291 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~  324 (331)
                      .-++.|++.|++|-+ .+||+||++||+|+.++.-
T Consensus       199 ~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~~  233 (567)
T PRK14667        199 EVLPELYDKIEEYSQKLMFEKAAVIRDQILALENL  233 (567)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            345778888888887 9999999999999999753

>PRK14670 uvrC excinuclease ABC subunit C; Provisional

Probab=91.17  E-value=0.26  Score=52.38  Aligned_cols=33  Identities=12%  Similarity=0.191  Sum_probs=28.2

Q ss_pred             hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020092          292 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK  324 (331)
Q Consensus       292 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~  324 (331)
                      -++.|++.|++|-+ .+||+||++||+|..++.-
T Consensus       178 ~~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~~~  211 (574)
T PRK14670        178 LLSQIEIKMKEAIQKEDFEAAIKLKETKRSLIEI  211 (574)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            35678888888887 9999999999999999753

>PRK14671 uvrC excinuclease ABC subunit C; Provisional

Probab=91.00  E-value=0.27  Score=52.60  Aligned_cols=32  Identities=16%  Similarity=0.322  Sum_probs=27.8

Q ss_pred             hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHh
Q 020092          292 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRA  323 (331)
Q Consensus       292 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~  323 (331)
                      -++.|++.|++|-+ .+||+||++||+|..++.
T Consensus       216 l~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~~  248 (621)
T PRK14671        216 LIRSLTEEMQRAAAELKFEEAAELKDQIESLKR  248 (621)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            35778888888887 999999999999999974

>PRK14669 uvrC excinuclease ABC subunit C; Provisional

Probab=90.99  E-value=0.27  Score=52.69  Aligned_cols=34  Identities=21%  Similarity=0.206  Sum_probs=28.4

Q ss_pred             hhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020092          291 KEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK  324 (331)
Q Consensus       291 ~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~  324 (331)
                      .-++.|++.|++|-+ .+||+||++||+|+.++.-
T Consensus       203 ~l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~~  237 (624)
T PRK14669        203 DLARSLRARMEAAALEMQFELAAKYRDLITTVEEL  237 (624)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            345678888888887 9999999999999998753

>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]

Probab=88.89  E-value=0.52  Score=50.22  Aligned_cols=33  Identities=21%  Similarity=0.272  Sum_probs=28.2

Q ss_pred             hHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020092          292 EFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK  324 (331)
Q Consensus       292 e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~  324 (331)
                      -+..|++.|++|-+ .+||.||++||+|..++.-
T Consensus       203 v~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~~l  236 (581)
T COG0322         203 VLQELEEKMEEASENLDFERAARLRDQIKALEKL  236 (581)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence            35678888888887 9999999999999999753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	331
1vjl_A	164	Hypothetical protein TM0160; structural genomics,	1e-23

>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A Length = 164

 Score = 94.4 bits (234), Expect = 1e-23
 Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 18/155 (11%)

Query: 112 MIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMR 171
           M K      ++ +  +            P ++L   +GT  +LPI +       L  AM 
Sbjct: 13  MRKAW----VKTLALDRVSNT-------PVVILG-IEGTNRVLPIWIGACEGHALALAME 60

Query: 172 NVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYL------TKVGNETECVS 225
            ++  RP  + ++  ++E +   V  V +       ++A L +       +   E   + 
Sbjct: 61  KMEFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTFYATLVIRDLTYTDEEDEEAALID 120

Query: 226 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE 260
            D RPSDAI +AV+   PI V+  L     + +  
Sbjct: 121 IDSRPSDAIILAVKTGAPIFVSDNLVEKHSIELEV 155

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	331
1vjl_A	164	Hypothetical protein TM0160; structural genomics,	100.0
1e52_A	63	Excinuclease ABC subunit; DNA excision repair, UVR	97.82
2d7d_A	661	Uvrabc system protein B; helicase, protein-DNA-ADP	95.76
1c4o_A	664	DNA nucleotide excision repair enzyme UVRB; uvrabc	94.95

>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A

Probab=100.00  E-value=5e-39  Score=284.17  Aligned_cols=132  Identities=23%  Similarity=0.348  Sum_probs=121.3

Q ss_pred             CCCccCCCCCCCcEEEEEeeCCCceEEEEEEChHHHHHHHHHHcccCCCCCChhHHHHHHHHHhCCeEeEEEEEeeECCE
Q 020092          128 PQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEA  207 (331)
Q Consensus       128 ~q~gaLd~~a~~pvIVL~~edg~~r~LPI~Ig~~EA~aI~~aL~~~~~~RPlThDLL~eiLe~lg~~v~~V~I~~l~dGv  207 (331)
                      ..++++|.++++|+|||++++++ |+||||||..||.+|+.++++.+++||+|||||.++++++|+++.+|+|++++||+
T Consensus        18 v~gi~ld~~~~~pvvvL~~~~g~-r~LPI~Ig~~EA~aI~~~l~~~~~~RPlThDLl~~il~~lg~~v~~V~I~~l~dgt   96 (164)
T 1vjl_A           18 VKTLALDRVSNTPVVILGIEGTN-RVLPIWIGACEGHALALAMEKMEFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNT   96 (164)
T ss_dssp             EEEEEECTTTCCEEEEEEETTSS-EEEEEECCHHHHHHHHHHHHTCCCSSCCHHHHHHHHHHHTTEEEEEEEEEEEETTE
T ss_pred             EEEEEEcCCCCceEEEEEecCCC-EEEEEEECHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEeECCE
Confidence            34899999999999999998876 89999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEe------ecCccceEEEEeCChHHHHHHHHHcCCCEEEehhhHhhcCeeeee
Q 020092          208 YFAQLYLT------KVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE  260 (331)
Q Consensus       208 FyA~L~l~------~~g~~~e~~~IDaRPSDAIaLAlR~k~PIyV~eeVl~~agi~v~e  260 (331)
                      |||+|+++      +++++.+..++|+||||||+||+|+++||||+|+|++++|+++.+
T Consensus        97 fyA~L~l~~~~~~~~~~~~~~~~~iDaRPSDAIaLAlR~~~PI~V~e~Vl~~a~i~~~~  155 (164)
T 1vjl_A           97 FYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIELEV  155 (164)
T ss_dssp             EEEEEEEEECC--------CCEEEEEECHHHHHHHHHHHTCCEEEEHHHHHHHCEECCH
T ss_pred             EEEEEEEeccccccCCCCcceEEEEECcHHHHHHHHHHHCCCEEEcHHHHhhcCCCCcc
Confidence            99999999      654333678999999999999999999999999999999998864

>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*

Probab=95.76  E-value=0.0048  Score=63.87  Aligned_cols=35  Identities=26%  Similarity=0.317  Sum_probs=25.4

Q ss_pred             hhhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhh
Q 020092          290 TKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAK  324 (331)
Q Consensus       290 ~~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~  324 (331)
                      .+.++.|+++|++|.+ ++||+||+|||+|+.|+++
T Consensus       625 ~~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~~  660 (661)
T 2d7d_A          625 QKVVEQMEHEMKEAAKALDFERAAELRDLLLELKAE  660 (661)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhc
Confidence            3457778888888888 9999999999999999854

>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*

Probab=94.95  E-value=0.0043  Score=64.22  Aligned_cols=37  Identities=22%  Similarity=0.253  Sum_probs=0.0

Q ss_pred             chhhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhh
Q 020092          289 DTKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR  325 (331)
Q Consensus       289 ~~~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~  325 (331)
                      ..+.++.|+++|++|.+ ++||+||+|||+|++|+++.
T Consensus       609 ~~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~~  646 (664)
T 1c4o_A          609 LRERIAELELAMWQAAEALDFERAARLRDEIRALEARL  646 (664)
T ss_dssp             --------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            34567889998888887 99999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	331
d1vjla_	151	d.257.1.1 (A:) Hypothetical protein TM0160 {Thermo	8e-28

>d1vjla_ d.257.1.1 (A:) Hypothetical protein TM0160 {Thermotoga maritima [TaxId: 2336]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein TM0160
superfamily: Hypothetical protein TM0160
family: Hypothetical protein TM0160
domain: Hypothetical protein TM0160
species: Thermotoga maritima [TaxId: 2336]

 Score =  103 bits (259), Expect = 8e-28
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 135 DYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYE 194
           D   +  +V+   +GT  +LPI +       L  AM  ++  RP  + ++  ++E +   
Sbjct: 13  DRVSNTPVVILGIEGTNRVLPIWIGACEGHALALAMEKMEFPRPLTHDLLLSVLESLEAR 72

Query: 195 VRLVRVTKRVHEAYFAQLYL------TKVGNETECVSFDLRPSDAINIAVRCKVPIQVNK 248
           V  V +       ++A L +       +   E   +  D RPSDAI +AV+   PI V+ 
Sbjct: 73  VDKVIIHSLKDNTFYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSD 132

Query: 249 YLAYSDGMRVIES 261
            L     + +  +
Sbjct: 133 NLVEKHSIELEVN 145

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	331
d1vjla_	151	Hypothetical protein TM0160 {Thermotoga maritima [	100.0
d1e52a_	56	C-terminal UvrC-binding domain of UvrB {Escherichi	97.78

>d1vjla_ d.257.1.1 (A:) Hypothetical protein TM0160 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein TM0160
superfamily: Hypothetical protein TM0160
family: Hypothetical protein TM0160
domain: Hypothetical protein TM0160
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.4e-37  Score=269.39  Aligned_cols=130  Identities=24%  Similarity=0.352  Sum_probs=118.3

Q ss_pred             CccCCCCCCCcEEEEEeeCCCceEEEEEEChHHHHHHHHHHcccCCCCCChhHHHHHHHHHhCCeEeEEEEEeeECCEEE
Q 020092          130 GGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYF  209 (331)
Q Consensus       130 ~gaLd~~a~~pvIVL~~edg~~r~LPI~Ig~~EA~aI~~aL~~~~~~RPlThDLL~eiLe~lg~~v~~V~I~~l~dGvFy  209 (331)
                      +-+++..+++|+|||++++++ +.||||||..||++|+.++++.+++||+|||||.++++++|+++.+|+|+++++|+||
T Consensus         9 ~i~~~~~~~~pvvlL~~~~~~-~~LPI~Ig~~EA~~I~~~l~~~~~~RP~thDLl~~~l~~lg~~v~~V~I~~~~dg~fy   87 (151)
T d1vjla_           9 TLALDRVSNTPVVILGIEGTN-RVLPIWIGACEGHALALAMEKMEFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTFY   87 (151)
T ss_dssp             EEEECTTTCCEEEEEEETTSS-EEEEEECCHHHHHHHHHHHHTCCCSSCCHHHHHHHHHHHTTEEEEEEEEEEEETTEEE
T ss_pred             EEEEecCCCCcEEEEEECCCC-eEEEEEEChHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhCCEEEEEEEEEEecCCeE
Confidence            445677788999999998776 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeecCc------cceEEEEeCChHHHHHHHHHcCCCEEEehhhHhhcCeeeee
Q 020092          210 AQLYLTKVGN------ETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE  260 (331)
Q Consensus       210 A~L~l~~~g~------~~e~~~IDaRPSDAIaLAlR~k~PIyV~eeVl~~agi~v~e  260 (331)
                      |+|+++++..      +++.+++||||||||+||+|+++||||+++|++++|+.+..
T Consensus        88 A~L~l~~~~~~~~~~~~~~~~~iDaRPSDAIaLAlr~~~PI~v~~~Vl~~a~i~~~~  144 (151)
T d1vjla_          88 ATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIELEV  144 (151)
T ss_dssp             EEEEEEECC--------CCEEEEEECHHHHHHHHHHHTCCEEEEHHHHHHHCEECCH
T ss_pred             EEEEEecCcccccccccCceeEeccChhHHHHHHHhhCCCEEEcHHHHHhcCCCCCc
Confidence            9999976421      23678999999999999999999999999999999997653

>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: C-terminal UvrC-binding domain of UvrB
family: C-terminal UvrC-binding domain of UvrB
domain: C-terminal UvrC-binding domain of UvrB
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=8.5e-06  Score=58.43  Aligned_cols=37  Identities=24%  Similarity=0.368  Sum_probs=32.5

Q ss_pred             chhhHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhh
Q 020092          289 DTKEFNLVRNMLIAAVE-ERYRDAAQWRDKLGQLRAKR  325 (331)
Q Consensus       289 ~~~e~~~L~~~L~~aie-E~YE~AA~lRDeI~~l~~~~  325 (331)
                      ..+.++.|++.|.+|.+ .+||+||.|||+|+.|++..
T Consensus        15 l~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~l   52 (56)
T d1e52a_          15 LQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF   52 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence            35678899999999988 99999999999999998753