Citrus Sinensis ID: 020093
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 331 | 2.2.26 [Sep-21-2011] | |||||||
| Q8GYN9 | 337 | 1,4-Dihydroxy-2-naphthoyl | yes | no | 0.990 | 0.973 | 0.774 | 1e-151 | |
| Q9CLV5 | 285 | 1,4-Dihydroxy-2-naphthoyl | yes | no | 0.845 | 0.982 | 0.646 | 1e-103 | |
| Q7CQ56 | 285 | 1,4-Dihydroxy-2-naphthoyl | yes | no | 0.833 | 0.968 | 0.634 | 1e-100 | |
| P0ABU0 | 285 | 1,4-Dihydroxy-2-naphthoyl | N/A | no | 0.833 | 0.968 | 0.637 | 1e-100 | |
| P0ABU1 | 285 | 1,4-Dihydroxy-2-naphthoyl | yes | no | 0.833 | 0.968 | 0.637 | 1e-100 | |
| P44960 | 285 | 1,4-Dihydroxy-2-naphthoyl | yes | no | 0.794 | 0.922 | 0.671 | 1e-100 | |
| P23966 | 271 | 1,4-Dihydroxy-2-naphthoyl | yes | no | 0.791 | 0.966 | 0.651 | 5e-98 | |
| Q8NXA0 | 273 | 1,4-Dihydroxy-2-naphthoyl | yes | no | 0.806 | 0.978 | 0.643 | 1e-96 | |
| Q6GAG7 | 273 | 1,4-Dihydroxy-2-naphthoyl | yes | no | 0.806 | 0.978 | 0.643 | 1e-96 | |
| Q6GI37 | 273 | 1,4-Dihydroxy-2-naphthoyl | yes | no | 0.806 | 0.978 | 0.643 | 2e-96 |
| >sp|Q8GYN9|MENB_ARATH 1,4-Dihydroxy-2-naphthoyl-CoA synthase, peroxisomal OS=Arabidopsis thaliana GN=MENB PE=1 SV=2 | Back alignment and function desciption |
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Score = 533 bits (1374), Expect = e-151, Method: Compositional matrix adjust.
Identities = 257/332 (77%), Positives = 292/332 (87%), Gaps = 4/332 (1%)
Query: 4 QIDSARRRMTAVANHLVPVISSDSNSGFIGLNNAS-MNDSYHRIHGEVPSHDVVWR---I 59
++ SA RR++ V NHL+P+ S + + + L +AS M+D +H++HGEVP+H+VVW+
Sbjct: 6 ELGSASRRLSVVTNHLIPIGFSPARADSVELCSASSMDDRFHKVHGEVPTHEVVWKKTDF 65
Query: 60 ACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVI 119
+ EF DIIYEKA+ EGIAKITINRP+RRNAFRP TVKEL+RAFNDARDDSSVGVI
Sbjct: 66 FGEGDNKEFVDIIYEKALDEGIAKITINRPERRNAFRPQTVKELMRAFNDARDDSSVGVI 125
Query: 120 ILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179
ILTGKGT+AFCSGGDQALRT+DGYAD + GRLNVLDLQVQIRRLPKPVIAMVAGYAVGG
Sbjct: 126 ILTGKGTKAFCSGGDQALRTQDGYADPNDVGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 185
Query: 180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE 239
GH+LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWF+ RFYTA
Sbjct: 186 GHILHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFMTRFYTAS 245
Query: 240 EAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDA 299
EAEKMGL+NTVVPLE LE+ET+KW REILRNSPTAIRVLK+ALNAVDDGHAGLQ LGGDA
Sbjct: 246 EAEKMGLINTVVPLEDLEKETVKWCREILRNSPTAIRVLKAALNAVDDGHAGLQGLGGDA 305
Query: 300 TLIFYGTEEGSEGKTAFVERRRPDFLKFPRRP 331
TL+FYGTEE +EG+TA++ RR PDF KF RRP
Sbjct: 306 TLLFYGTEEATEGRTAYMHRRPPDFSKFHRRP 337
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Involved in the biosynthesis of phylloquinone (vitamin K1). Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA). Arabidopsis thaliana (taxid: 3702) EC: 4EC: .EC: 1EC: .EC: 3EC: .EC: 3EC: 6 |
| >sp|Q9CLV5|MENB_PASMU 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Pasteurella multocida (strain Pm70) GN=menB PE=3 SV=1 | Back alignment and function description |
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Score = 374 bits (960), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/283 (64%), Positives = 221/283 (78%), Gaps = 3/283 (1%)
Query: 51 PSHDVVWR-IACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFND 109
P DV++ I + +TDI+Y K++ +GIAKITINRP+ RNAFRP TVKE+I+AF D
Sbjct: 4 PKDDVLYAPIEWQDHSEGYTDILYHKSL-DGIAKITINRPEVRNAFRPQTVKEMIQAFAD 62
Query: 110 ARDDSSVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRLPKPV 168
AR D +GVI+LTG+G +AFCSGGDQ +R GY D LNVLD Q IR PKPV
Sbjct: 63 ARFDEQIGVIVLTGQGEKAFCSGGDQKVRGDYGGYQDESGVHHLNVLDFQRDIRTCPKPV 122
Query: 169 IAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228
+AMVAGYA+GGGHVLHM+CDLTIAADNAIFGQTGPKVGSFD G+G+S M+R+VG KKARE
Sbjct: 123 VAMVAGYAIGGGHVLHMICDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKARE 182
Query: 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG 288
+WFL R Y A+EA +MGLVNTVVP +LE+ET++W RE+LRNSP A+R LK+ALNA DG
Sbjct: 183 IWFLCRQYDAKEALEMGLVNTVVPYAELEKETVRWCREMLRNSPIALRCLKAALNADCDG 242
Query: 289 HAGLQTLGGDATLIFYGTEEGSEGKTAFVERRRPDFLKFPRRP 331
AGLQ L G+AT++FY TEEG EG+ AF E+R PDF KF R P
Sbjct: 243 QAGLQELAGNATMLFYMTEEGQEGRNAFNEKRAPDFSKFKRNP 285
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Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA). Pasteurella multocida (strain Pm70) (taxid: 272843) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 EC: 6 |
| >sp|Q7CQ56|MENB_SALTY 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=menB PE=1 SV=1 | Back alignment and function description |
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Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/287 (63%), Positives = 220/287 (76%), Gaps = 11/287 (3%)
Query: 46 IHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIR 105
++ V HD C E +TDI YEK+ +GIAKITINRP RNAFRP TVKE+I+
Sbjct: 9 LYAPVEWHD------CSEG---YTDIRYEKST-DGIAKITINRPQVRNAFRPLTVKEMIQ 58
Query: 106 AFNDARDDSSVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRL 164
A DAR D +VGVIILTG+G +AFC+GGDQ +R GY D LNVLD Q QIR
Sbjct: 59 ALADARYDDNVGVIILTGEGDKAFCAGGDQKVRGDYGGYQDDSGVHHLNVLDFQRQIRTC 118
Query: 165 PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224
PKPV+AMVAGY++GGGHVLHM+CDLTIAA+NAIFGQTGPKVGSFD G+G+S M+R+VG K
Sbjct: 119 PKPVVAMVAGYSIGGGHVLHMMCDLTIAAENAIFGQTGPKVGSFDGGWGASYMARIVGQK 178
Query: 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNA 284
KARE+WFL R Y A++A MGLVNTVVPL LE+ET++W RE+L+NSP A+R LK+ALNA
Sbjct: 179 KAREIWFLCRQYDAQQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNA 238
Query: 285 VDDGHAGLQTLGGDATLIFYGTEEGSEGKTAFVERRRPDFLKFPRRP 331
DG AGLQ L G+AT++FY TEEG EG+ AF ++R+PDF KF R P
Sbjct: 239 DCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFKRNP 285
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Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA). Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 EC: 6 |
| >sp|P0ABU0|MENB_ECOLI 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Escherichia coli (strain K12) GN=menB PE=1 SV=1 | Back alignment and function description |
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Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/287 (63%), Positives = 218/287 (75%), Gaps = 11/287 (3%)
Query: 46 IHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIR 105
++ V HD C E F DI YEK+ +GIAKITINRP RNAFRP TVKE+I+
Sbjct: 9 LYAPVEWHD------CSEG---FEDIRYEKST-DGIAKITINRPQVRNAFRPLTVKEMIQ 58
Query: 106 AFNDARDDSSVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRL 164
A DAR D ++GVIILTG G +AFCSGGDQ +R GY D LNVLD Q QIR
Sbjct: 59 ALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTC 118
Query: 165 PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224
PKPV+AMVAGY++GGGHVLHM+CDLTIAADNAIFGQTGPKVGSFD G+G+S M+R+VG K
Sbjct: 119 PKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQK 178
Query: 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNA 284
KARE+WFL R Y A++A MGLVNTVVPL LE+ET++W RE+L+NSP A+R LK+ALNA
Sbjct: 179 KAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNA 238
Query: 285 VDDGHAGLQTLGGDATLIFYGTEEGSEGKTAFVERRRPDFLKFPRRP 331
DG AGLQ L G+AT++FY TEEG EG+ AF ++R+PDF KF R P
Sbjct: 239 DCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFKRNP 285
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Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA). Escherichia coli (strain K12) (taxid: 83333) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 EC: 6 |
| >sp|P0ABU1|MENB_ECOL6 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=menB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/287 (63%), Positives = 218/287 (75%), Gaps = 11/287 (3%)
Query: 46 IHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIR 105
++ V HD C E F DI YEK+ +GIAKITINRP RNAFRP TVKE+I+
Sbjct: 9 LYAPVEWHD------CSEG---FEDIRYEKST-DGIAKITINRPQVRNAFRPLTVKEMIQ 58
Query: 106 AFNDARDDSSVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRL 164
A DAR D ++GVIILTG G +AFCSGGDQ +R GY D LNVLD Q QIR
Sbjct: 59 ALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTC 118
Query: 165 PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224
PKPV+AMVAGY++GGGHVLHM+CDLTIAADNAIFGQTGPKVGSFD G+G+S M+R+VG K
Sbjct: 119 PKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQK 178
Query: 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNA 284
KARE+WFL R Y A++A MGLVNTVVPL LE+ET++W RE+L+NSP A+R LK+ALNA
Sbjct: 179 KAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNA 238
Query: 285 VDDGHAGLQTLGGDATLIFYGTEEGSEGKTAFVERRRPDFLKFPRRP 331
DG AGLQ L G+AT++FY TEEG EG+ AF ++R+PDF KF R P
Sbjct: 239 DCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFKRNP 285
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Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA). Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 EC: 6 |
| >sp|P44960|MENB_HAEIN 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=menB PE=3 SV=1 | Back alignment and function description |
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Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/265 (67%), Positives = 211/265 (79%), Gaps = 2/265 (0%)
Query: 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
++DI Y K+ +GIAKITINRP+ RNAFRP TVKE++ AF+DAR D ++GVI+LTG+G +
Sbjct: 22 YSDIRYHKST-DGIAKITINRPEVRNAFRPQTVKEMMTAFSDARFDENIGVIVLTGEGEK 80
Query: 128 AFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
AFCSGGDQ +R GY D LNVLD Q IR PKPV+AMVAGYA+GGGHVLHM+
Sbjct: 81 AFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRDIRSCPKPVVAMVAGYAIGGGHVLHML 140
Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
CDLTIAA+NAIFGQTGPKVGSFD G+G+S M+RLVG KKARE+WFL R Y A+EA MGL
Sbjct: 141 CDLTIAAENAIFGQTGPKVGSFDGGWGASYMARLVGQKKAREIWFLCRQYNAQEALDMGL 200
Query: 247 VNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGT 306
VNTVVP LE+ET++W RE+LRNSP AIR LK+ALNA DG AGLQ L G+AT++FY T
Sbjct: 201 VNTVVPYADLEKETVRWCREMLRNSPIAIRCLKAALNADCDGQAGLQELAGNATMLFYMT 260
Query: 307 EEGSEGKTAFVERRRPDFLKFPRRP 331
EEG EG+ AF E+R PDF KF R P
Sbjct: 261 EEGQEGRNAFNEKRAPDFSKFRRNP 285
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Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA). Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 EC: 6 |
| >sp|P23966|MENB_BACSU 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Bacillus subtilis (strain 168) GN=menB PE=1 SV=2 | Back alignment and function description |
|---|
Score = 357 bits (917), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 172/264 (65%), Positives = 207/264 (78%), Gaps = 2/264 (0%)
Query: 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
+ +I+YE GIAKITINRP+ NAF P TV E+I AF DARDD +VGVI+L G G +
Sbjct: 10 YDEILYETY--NGIAKITINRPEVHNAFTPKTVAEMIDAFADARDDQNVGVIVLAGAGDK 67
Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
AFCSGGDQ +R GY + RLNVLDLQ IR +PKPV+AMV+GYA+GGGHVLH+VC
Sbjct: 68 AFCSGGDQKVRGHGGYVGDDQIPRLNVLDLQRLIRVIPKPVVAMVSGYAIGGGHVLHIVC 127
Query: 188 DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLV 247
DLTIAADNAIFGQTGPKVGSFDAGYGS ++R+VG KKARE+W+L R Y A+EA MGLV
Sbjct: 128 DLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLV 187
Query: 248 NTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGTE 307
NTVVPLE+LE+ETIKW E+L SPTA+R LK+A NA DG AG+Q GDATL++Y T+
Sbjct: 188 NTVVPLEQLEEETIKWCEEMLEKSPTALRFLKAAFNADTDGLAGIQQFAGDATLLYYTTD 247
Query: 308 EGSEGKTAFVERRRPDFLKFPRRP 331
E EG+ +F E+R+PDF +FPR P
Sbjct: 248 EAKEGRDSFKEKRKPDFGQFPRFP 271
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Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA). Bacillus subtilis (strain 168) (taxid: 224308) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 EC: 6 |
| >sp|Q8NXA0|MENB_STAAW 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Staphylococcus aureus (strain MW2) GN=menB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (905), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 173/269 (64%), Positives = 212/269 (78%), Gaps = 2/269 (0%)
Query: 63 ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
E+ E+ +I YE EGIAK+TINRP+ RNAF P TV E+I AF+ ARDD +V VI+LT
Sbjct: 7 ETLREYDEIKYE--FYEGIAKVTINRPEVRNAFTPKTVSEMIDAFSRARDDQNVSVIVLT 64
Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
G+G AFCSGGDQ R GY + RLNVLDLQ IR +PKPVIAMV GYAVGGG+V
Sbjct: 65 GEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNV 124
Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
L++VCDLTIAADNAIFGQTGPKVGSFDAGYGS ++R+VG KKARE+W+L R Y A+EA
Sbjct: 125 LNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEAL 184
Query: 243 KMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLI 302
MGLVNTVVPLEK+E ET++W +EI+++SPTA+R LK+A+NA DG AGLQ + GDATL+
Sbjct: 185 DMGLVNTVVPLEKVEDETVQWCKEIMKHSPTALRFLKAAMNADTDGLAGLQQMAGDATLL 244
Query: 303 FYGTEEGSEGKTAFVERRRPDFLKFPRRP 331
+Y T+E EG+ AF E+R PDF +FP+ P
Sbjct: 245 YYTTDEAKEGRDAFKEKRDPDFDQFPKFP 273
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Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA). Staphylococcus aureus (strain MW2) (taxid: 196620) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 EC: 6 |
| >sp|Q6GAG7|MENB_STAAS 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Staphylococcus aureus (strain MSSA476) GN=menB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (905), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 173/269 (64%), Positives = 212/269 (78%), Gaps = 2/269 (0%)
Query: 63 ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
E+ E+ +I YE EGIAK+TINRP+ RNAF P TV E+I AF+ ARDD +V VI+LT
Sbjct: 7 ETLREYDEIKYE--FYEGIAKVTINRPEVRNAFTPKTVSEMIDAFSRARDDQNVSVIVLT 64
Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
G+G AFCSGGDQ R GY + RLNVLDLQ IR +PKPVIAMV GYAVGGG+V
Sbjct: 65 GEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNV 124
Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
L++VCDLTIAADNAIFGQTGPKVGSFDAGYGS ++R+VG KKARE+W+L R Y A+EA
Sbjct: 125 LNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEAL 184
Query: 243 KMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLI 302
MGLVNTVVPLEK+E ET++W +EI+++SPTA+R LK+A+NA DG AGLQ + GDATL+
Sbjct: 185 DMGLVNTVVPLEKVEDETVQWCKEIMKHSPTALRFLKAAMNADTDGLAGLQQMAGDATLL 244
Query: 303 FYGTEEGSEGKTAFVERRRPDFLKFPRRP 331
+Y T+E EG+ AF E+R PDF +FP+ P
Sbjct: 245 YYTTDEAKEGRDAFKEKRDPDFDQFPKFP 273
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Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA). Staphylococcus aureus (strain MSSA476) (taxid: 282459) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 EC: 6 |
| >sp|Q6GI37|MENB_STAAR 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Staphylococcus aureus (strain MRSA252) GN=menB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 352 bits (904), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 173/269 (64%), Positives = 212/269 (78%), Gaps = 2/269 (0%)
Query: 63 ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
E+ E+ +I YE EGIAK+TINRP+ RNAF P TV E+I AF+ ARDD +V VI+LT
Sbjct: 7 ETLREYDEIKYE--FYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLT 64
Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
G+G AFCSGGDQ R GY + RLNVLDLQ IR +PKPVIAMV GYAVGGG+V
Sbjct: 65 GEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNV 124
Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
L++VCDLTIAADNAIFGQTGPKVGSFDAGYGS ++R+VG KKARE+W+L R Y A+EA
Sbjct: 125 LNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEAL 184
Query: 243 KMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLI 302
MGLVNTVVPLEK+E ET++W +EI+++SPTA+R LK+A+NA DG AGLQ + GDATL+
Sbjct: 185 DMGLVNTVVPLEKVEDETVQWCKEIMKHSPTALRFLKAAMNADTDGLAGLQQMAGDATLL 244
Query: 303 FYGTEEGSEGKTAFVERRRPDFLKFPRRP 331
+Y T+E EG+ AF E+R PDF +FP+ P
Sbjct: 245 YYTTDEAKEGRDAFKEKRDPDFDQFPKFP 273
|
Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA). Staphylococcus aureus (strain MRSA252) (taxid: 282458) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 331 | ||||||
| 147771137 | 336 | hypothetical protein VITISV_034257 [Viti | 0.981 | 0.967 | 0.824 | 1e-158 | |
| 225425573 | 336 | PREDICTED: 1,4-Dihydroxy-2-naphthoyl-CoA | 0.981 | 0.967 | 0.821 | 1e-158 | |
| 255568782 | 335 | Naphthoate synthase, putative [Ricinus c | 0.990 | 0.979 | 0.807 | 1e-156 | |
| 307135970 | 333 | naphthoate synthase [Cucumis melo subsp. | 0.969 | 0.963 | 0.816 | 1e-155 | |
| 449517563 | 333 | PREDICTED: 1,4-Dihydroxy-2-naphthoyl-CoA | 0.969 | 0.963 | 0.810 | 1e-154 | |
| 449434935 | 333 | PREDICTED: 1,4-Dihydroxy-2-naphthoyl-CoA | 0.969 | 0.963 | 0.807 | 1e-153 | |
| 224060255 | 327 | predicted protein [Populus trichocarpa] | 0.966 | 0.978 | 0.813 | 1e-151 | |
| 359806589 | 339 | uncharacterized protein LOC100807101 [Gl | 0.990 | 0.967 | 0.782 | 1e-151 | |
| 297837457 | 337 | hypothetical protein ARALYDRAFT_475277 [ | 0.990 | 0.973 | 0.777 | 1e-150 | |
| 30696431 | 337 | naphthoate synthase [Arabidopsis thalian | 0.990 | 0.973 | 0.774 | 1e-149 |
| >gi|147771137|emb|CAN74179.1| hypothetical protein VITISV_034257 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 268/325 (82%), Positives = 292/325 (89%)
Query: 7 SARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGT 66
+ARRR+ +VA+HL P+ S+ N +G + S DSY R+HGEVP+HDV W ACDESG
Sbjct: 12 NARRRLASVAHHLTPLHSTTPNCSSLGFHTTSAPDSYRRVHGEVPTHDVTWNPACDESGK 71
Query: 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
FTDIIYEKAVGE IAKITINRP+RRNAFRP+TVKELIRAFNDARDDSSVGVII TGKGT
Sbjct: 72 AFTDIIYEKAVGEAIAKITINRPERRNAFRPNTVKELIRAFNDARDDSSVGVIIFTGKGT 131
Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
+AFCSGGDQA R RDGYAD+++FGRLNVLDLQ+QIRRLPKPVIAMVAGYAVGGGHVLHMV
Sbjct: 132 KAFCSGGDQAFRGRDGYADHDDFGRLNVLDLQMQIRRLPKPVIAMVAGYAVGGGHVLHMV 191
Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
CDLTIAADNAIFGQTGPKVGSFD GYGSSIMSRL+GPKKAREMWF ARFYTA EAEKMGL
Sbjct: 192 CDLTIAADNAIFGQTGPKVGSFDXGYGSSIMSRLIGPKKAREMWFTARFYTASEAEKMGL 251
Query: 247 VNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGT 306
VN VVPLE LE+ET+KW REILRNSPTAIRVLKSALNAVDDGHAGLQ LGG+AT IFYGT
Sbjct: 252 VNIVVPLENLEKETVKWCREILRNSPTAIRVLKSALNAVDDGHAGLQELGGNATFIFYGT 311
Query: 307 EEGSEGKTAFVERRRPDFLKFPRRP 331
EEG+EGKTA++ERR PDF KFPRRP
Sbjct: 312 EEGNEGKTAYLERRPPDFSKFPRRP 336
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425573|ref|XP_002267500.1| PREDICTED: 1,4-Dihydroxy-2-naphthoyl-CoA synthase, peroxisomal [Vitis vinifera] gi|297739062|emb|CBI28551.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust.
Identities = 267/325 (82%), Positives = 292/325 (89%)
Query: 7 SARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGT 66
+ARRR+ +VA+HL P+ S+ N +G + S DSY R+HGEVP+HDV W ACDESG
Sbjct: 12 NARRRLASVAHHLTPLHSTTPNCSSLGFHTTSAPDSYRRVHGEVPTHDVTWNPACDESGK 71
Query: 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
FTDIIYEKAVGE IAKITINRP+RRNAFRP+TVKELIRAFNDARDDSSVGVII TGKGT
Sbjct: 72 AFTDIIYEKAVGEAIAKITINRPERRNAFRPNTVKELIRAFNDARDDSSVGVIIFTGKGT 131
Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
+AFCSGGDQA R RDGYAD+++FGRLNVLDLQ+QIRRLPKPVIAMVAGYAVGGGHVLHMV
Sbjct: 132 KAFCSGGDQAFRGRDGYADHDDFGRLNVLDLQMQIRRLPKPVIAMVAGYAVGGGHVLHMV 191
Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
CDLTIAADNAIFGQTGPKVGSFD+GYGSSIMSRL+GPKKAREMWF ARFYTA EAEKMGL
Sbjct: 192 CDLTIAADNAIFGQTGPKVGSFDSGYGSSIMSRLIGPKKAREMWFTARFYTASEAEKMGL 251
Query: 247 VNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGT 306
VN VV LE LE+ET+KW REILRNSPTAIRVLKSALNAVDDGHAGLQ LGG+AT IFYGT
Sbjct: 252 VNIVVQLENLEKETVKWCREILRNSPTAIRVLKSALNAVDDGHAGLQELGGNATFIFYGT 311
Query: 307 EEGSEGKTAFVERRRPDFLKFPRRP 331
EEG+EGKTA++ERR PDF KFPRRP
Sbjct: 312 EEGNEGKTAYLERRPPDFSKFPRRP 336
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568782|ref|XP_002525362.1| Naphthoate synthase, putative [Ricinus communis] gi|223535325|gb|EEF37000.1| Naphthoate synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 265/328 (80%), Positives = 293/328 (89%)
Query: 4 QIDSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDE 63
++D+ RR+ V NHL PV S ++S N +S+++SYHRIHGEV + V+W+ ACDE
Sbjct: 8 EMDALGRRLATVTNHLNPVAPSSNHSPIDLSNTSSIDNSYHRIHGEVSNEQVIWKNACDE 67
Query: 64 SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
G EFTDIIYEKAVGEGIAKITINRP+RRNAFRP TVKE+IRAFNDARDDSS+GVIILTG
Sbjct: 68 YGKEFTDIIYEKAVGEGIAKITINRPERRNAFRPQTVKEMIRAFNDARDDSSIGVIILTG 127
Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
KGT+AFCSGGDQ+LRT DGYAD + GRLNVLDLQVQIRRLPKP+IAMVAGYAVGGGHVL
Sbjct: 128 KGTKAFCSGGDQSLRTADGYADPNDMGRLNVLDLQVQIRRLPKPIIAMVAGYAVGGGHVL 187
Query: 184 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEK 243
HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTA EAEK
Sbjct: 188 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTASEAEK 247
Query: 244 MGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIF 303
MGLVNTVVPLE LE ET+KW R+ILRNSPTAIRVLKSALNAVDDGHAGLQ L G+ TLIF
Sbjct: 248 MGLVNTVVPLETLEHETVKWCRQILRNSPTAIRVLKSALNAVDDGHAGLQELAGNTTLIF 307
Query: 304 YGTEEGSEGKTAFVERRRPDFLKFPRRP 331
YGTEEG+EGKTA+++ RRPDF +FPRRP
Sbjct: 308 YGTEEGNEGKTAYMQHRRPDFSRFPRRP 335
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307135970|gb|ADN33829.1| naphthoate synthase [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust.
Identities = 263/322 (81%), Positives = 293/322 (90%), Gaps = 1/322 (0%)
Query: 10 RRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFT 69
RR+ ++++HLVP I N I L++AS++DSYHR HG V +H VVW IA DE G EFT
Sbjct: 13 RRVASISSHLVP-IPQTPNPDSIHLSSASIDDSYHRKHGTVSTHPVVWSIAGDEFGKEFT 71
Query: 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF 129
DIIYEKAVGE IAKITINRP+RRNAFRP T+KELIRAFNDARDDSS+GVIILTGKGTEAF
Sbjct: 72 DIIYEKAVGEAIAKITINRPERRNAFRPQTIKELIRAFNDARDDSSIGVIILTGKGTEAF 131
Query: 130 CSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL 189
CSGGDQALR +DGY+DY++FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH+LHMVCDL
Sbjct: 132 CSGGDQALRKKDGYSDYDDFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHILHMVCDL 191
Query: 190 TIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNT 249
TIAA+NAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFL RFY+A EA+KMGLVNT
Sbjct: 192 TIAAENAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTRFYSASEADKMGLVNT 251
Query: 250 VVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGTEEG 309
VVPL++LEQETIKW REILRNSPTAIRVLKSALNAVDDGHAGLQ L GDATL+FYGTEE
Sbjct: 252 VVPLDQLEQETIKWCREILRNSPTAIRVLKSALNAVDDGHAGLQALAGDATLMFYGTEES 311
Query: 310 SEGKTAFVERRRPDFLKFPRRP 331
+EG++A++ERR PDF KFPR+P
Sbjct: 312 NEGRSAYMERRPPDFSKFPRKP 333
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449517563|ref|XP_004165815.1| PREDICTED: 1,4-Dihydroxy-2-naphthoyl-CoA synthase, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 261/322 (81%), Positives = 292/322 (90%), Gaps = 1/322 (0%)
Query: 10 RRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFT 69
RR+ ++++HLVP I N I L++AS++DSYHR HG V +H VVW A DE G EFT
Sbjct: 13 RRVASISSHLVP-IPQTPNPDSIHLSSASIDDSYHRKHGTVSTHPVVWSKAGDEFGKEFT 71
Query: 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF 129
DIIYEKAVGE IAKITINRP+RRNAFRP T+KELIRAFNDARDDSS+GV+ILTGKGTEAF
Sbjct: 72 DIIYEKAVGEAIAKITINRPERRNAFRPQTIKELIRAFNDARDDSSIGVVILTGKGTEAF 131
Query: 130 CSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL 189
CSGGDQALR +DGY+DY++FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH+LHMVCDL
Sbjct: 132 CSGGDQALRKKDGYSDYDDFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHILHMVCDL 191
Query: 190 TIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNT 249
TIAA+NAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFL RFY+A EA+KMGLVNT
Sbjct: 192 TIAAENAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTRFYSASEADKMGLVNT 251
Query: 250 VVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGTEEG 309
VVPL++LEQETIKW REILRNSPTAIRVLKSALNAVDDGHAGLQ L GDATL+FYGTEE
Sbjct: 252 VVPLDQLEQETIKWCREILRNSPTAIRVLKSALNAVDDGHAGLQALAGDATLVFYGTEES 311
Query: 310 SEGKTAFVERRRPDFLKFPRRP 331
+EG++A++ERR PDF KFPR+P
Sbjct: 312 NEGRSAYMERRPPDFSKFPRKP 333
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434935|ref|XP_004135251.1| PREDICTED: 1,4-Dihydroxy-2-naphthoyl-CoA synthase, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/322 (80%), Positives = 291/322 (90%), Gaps = 1/322 (0%)
Query: 10 RRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFT 69
RR+ ++++HLVP I N I L++AS++DSYHR HG V + VVW A DE G EFT
Sbjct: 13 RRVASISSHLVP-IPQTPNPDSIHLSSASIDDSYHRKHGTVSTLPVVWSKAGDEFGKEFT 71
Query: 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF 129
DIIYEKAVGE IAKITINRP+RRNAFRP T+KELIRAFNDARDDSS+GV+ILTGKGTEAF
Sbjct: 72 DIIYEKAVGEAIAKITINRPERRNAFRPQTIKELIRAFNDARDDSSIGVVILTGKGTEAF 131
Query: 130 CSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL 189
CSGGDQALR +DGY+DY++FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH+LHMVCDL
Sbjct: 132 CSGGDQALRKKDGYSDYDDFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHILHMVCDL 191
Query: 190 TIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNT 249
TIAA+NAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFL RFY+A EA+KMGLVNT
Sbjct: 192 TIAAENAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTRFYSASEADKMGLVNT 251
Query: 250 VVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGTEEG 309
VVPL++LEQETIKW REILRNSPTAIRVLKSALNAVDDGHAGLQ L GDATL+FYGTEE
Sbjct: 252 VVPLDQLEQETIKWCREILRNSPTAIRVLKSALNAVDDGHAGLQALAGDATLVFYGTEES 311
Query: 310 SEGKTAFVERRRPDFLKFPRRP 331
+EG++A++ERR PDF KFPR+P
Sbjct: 312 NEGRSAYMERRPPDFSKFPRKP 333
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224060255|ref|XP_002300108.1| predicted protein [Populus trichocarpa] gi|222847366|gb|EEE84913.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 266/327 (81%), Positives = 287/327 (87%), Gaps = 7/327 (2%)
Query: 12 MTAVANHLV---PVISSDSNSGFIGL--NNASMNDSYHRIHGEVPSHDVVWR--IACDES 64
M +VANHL+ P +S S + L N ASMND+YHR+HG V + +VVWR A D S
Sbjct: 1 MASVANHLMVPSPPTASSSKCDSVELVPNAASMNDNYHRVHGNVSNKEVVWRNVAASDGS 60
Query: 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124
+FTDIIY+KAVGEGIAKI INRP+RRNAFRP TVKELI AFNDARDDSSVGVIILTGK
Sbjct: 61 TKDFTDIIYQKAVGEGIAKIVINRPERRNAFRPRTVKELIAAFNDARDDSSVGVIILTGK 120
Query: 125 GTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
GT+AFCSGGDQALRT+DGYAD + GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH+LH
Sbjct: 121 GTKAFCSGGDQALRTKDGYADPNDMGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHILH 180
Query: 185 MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKM 244
MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFL RFYTA EAEKM
Sbjct: 181 MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTRFYTASEAEKM 240
Query: 245 GLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFY 304
GLVNTVVPL+ LEQET+KW REILRNSPTAIRVLKSALNAVDDGHAGLQ L G+ TLI+Y
Sbjct: 241 GLVNTVVPLDNLEQETVKWCREILRNSPTAIRVLKSALNAVDDGHAGLQELAGNTTLIYY 300
Query: 305 GTEEGSEGKTAFVERRRPDFLKFPRRP 331
GTEEGSEGK+AF+ERR PDF KFPRRP
Sbjct: 301 GTEEGSEGKSAFMERRPPDFSKFPRRP 327
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359806589|ref|NP_001241269.1| uncharacterized protein LOC100807101 [Glycine max] gi|255639630|gb|ACU20109.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 259/331 (78%), Positives = 287/331 (86%), Gaps = 3/331 (0%)
Query: 4 QIDSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIAC-- 61
+++A RR+ +V NHL P ++ + N+S+ R+HGEVPSHDVVWRI
Sbjct: 9 HLETATRRLASVTNHLTPSSYHNAPGELAPCLTSGGNNSFRRVHGEVPSHDVVWRIVASD 68
Query: 62 -DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVII 120
D SG +FTDI+YEKAVGEGIAKI+INRP+RRNAFRPHTVKEL+RAF DARDDSS+GV+I
Sbjct: 69 HDNSGKDFTDIVYEKAVGEGIAKISINRPERRNAFRPHTVKELMRAFTDARDDSSIGVVI 128
Query: 121 LTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGG 180
LTGKGTEAFCSGGDQALRT DGY+D +F LNVLDLQVQIRRLPKPVIAMVAGYAVGGG
Sbjct: 129 LTGKGTEAFCSGGDQALRTNDGYSDNGSFSSLNVLDLQVQIRRLPKPVIAMVAGYAVGGG 188
Query: 181 HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEE 240
HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFL RFY A E
Sbjct: 189 HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLTRFYDAVE 248
Query: 241 AEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDAT 300
AEKMGLVNTVVPLE LE+ETIKW REILRNSPTAIRVLKSALNAVDDGH+GLQ +GG+AT
Sbjct: 249 AEKMGLVNTVVPLENLEKETIKWCREILRNSPTAIRVLKSALNAVDDGHSGLQEIGGNAT 308
Query: 301 LIFYGTEEGSEGKTAFVERRRPDFLKFPRRP 331
LI+YGTEE EGKTA+++RRRPDF KF RRP
Sbjct: 309 LIYYGTEEAKEGKTAYMQRRRPDFSKFNRRP 339
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297837457|ref|XP_002886610.1| hypothetical protein ARALYDRAFT_475277 [Arabidopsis lyrata subsp. lyrata] gi|297332451|gb|EFH62869.1| hypothetical protein ARALYDRAFT_475277 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 258/332 (77%), Positives = 293/332 (88%), Gaps = 4/332 (1%)
Query: 4 QIDSARRRMTAVANHLVPVISSDSNSGFIGLNNAS-MNDSYHRIHGEVPSHDVVWRIA-- 60
++ SA RR++ V NHL+P+ + + + L +AS M+DS+H++HGEVP+H+ VW+ A
Sbjct: 6 ELGSASRRISVVTNHLIPIGFNPTRVDSVELCSASSMDDSFHKVHGEVPTHEAVWKKAEF 65
Query: 61 -CDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVI 119
D EF DIIYEKA+ EGIAKITINRP+RRNAFRP TVKEL+RAFNDARDDSSVGVI
Sbjct: 66 FVDGDNKEFVDIIYEKALDEGIAKITINRPERRNAFRPLTVKELMRAFNDARDDSSVGVI 125
Query: 120 ILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179
ILTGKGT+AFCSGGDQALRT+DGYAD + GRLNVLDLQ+QIRRLPKPVIAMVAGYAVGG
Sbjct: 126 ILTGKGTKAFCSGGDQALRTQDGYADPNDVGRLNVLDLQIQIRRLPKPVIAMVAGYAVGG 185
Query: 180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE 239
GH+LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWF+ RFYTA
Sbjct: 186 GHILHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFMTRFYTAS 245
Query: 240 EAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDA 299
EAEKMGL+NTVVPLE LE+ET+KW REILRNSPTAIRVLK+ALNAVDDGHAGLQ LGGDA
Sbjct: 246 EAEKMGLINTVVPLEMLEKETVKWCREILRNSPTAIRVLKAALNAVDDGHAGLQGLGGDA 305
Query: 300 TLIFYGTEEGSEGKTAFVERRRPDFLKFPRRP 331
TL+FYGTEE EG+TA+++RR PDF KFPRRP
Sbjct: 306 TLLFYGTEEAIEGRTAYMQRRPPDFSKFPRRP 337
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30696431|ref|NP_176255.2| naphthoate synthase [Arabidopsis thaliana] gi|327488386|sp|Q8GYN9.2|MENB_ARATH RecName: Full=1,4-Dihydroxy-2-naphthoyl-CoA synthase, peroxisomal; Short=DHNS; AltName: Full=Enoyl-CoA hydratase/isomerase D; Short=ECHID; AltName: Full=Naphthoate synthase gi|192571726|gb|ACF04808.1| At1g60550 [Arabidopsis thaliana] gi|332195575|gb|AEE33696.1| naphthoate synthase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 257/332 (77%), Positives = 292/332 (87%), Gaps = 4/332 (1%)
Query: 4 QIDSARRRMTAVANHLVPVISSDSNSGFIGLNNAS-MNDSYHRIHGEVPSHDVVWR---I 59
++ SA RR++ V NHL+P+ S + + + L +AS M+D +H++HGEVP+H+VVW+
Sbjct: 6 ELGSASRRLSVVTNHLIPIGFSPARADSVELCSASSMDDRFHKVHGEVPTHEVVWKKTDF 65
Query: 60 ACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVI 119
+ EF DIIYEKA+ EGIAKITINRP+RRNAFRP TVKEL+RAFNDARDDSSVGVI
Sbjct: 66 FGEGDNKEFVDIIYEKALDEGIAKITINRPERRNAFRPQTVKELMRAFNDARDDSSVGVI 125
Query: 120 ILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179
ILTGKGT+AFCSGGDQALRT+DGYAD + GRLNVLDLQVQIRRLPKPVIAMVAGYAVGG
Sbjct: 126 ILTGKGTKAFCSGGDQALRTQDGYADPNDVGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 185
Query: 180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE 239
GH+LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWF+ RFYTA
Sbjct: 186 GHILHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFMTRFYTAS 245
Query: 240 EAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDA 299
EAEKMGL+NTVVPLE LE+ET+KW REILRNSPTAIRVLK+ALNAVDDGHAGLQ LGGDA
Sbjct: 246 EAEKMGLINTVVPLEDLEKETVKWCREILRNSPTAIRVLKAALNAVDDGHAGLQGLGGDA 305
Query: 300 TLIFYGTEEGSEGKTAFVERRRPDFLKFPRRP 331
TL+FYGTEE +EG+TA++ RR PDF KF RRP
Sbjct: 306 TLLFYGTEEATEGRTAYMHRRPPDFSKFHRRP 337
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 331 | ||||||
| TAIR|locus:2036626 | 337 | ECHID "enoyl-CoA hydratase/iso | 0.990 | 0.973 | 0.774 | 7.4e-137 | |
| UNIPROTKB|Q9KQM5 | 296 | VC_1973 "Naphthoate synthase" | 0.821 | 0.918 | 0.661 | 1.7e-91 | |
| TIGR_CMR|VC_1973 | 296 | VC_1973 "naphthoate synthase" | 0.821 | 0.918 | 0.661 | 1.7e-91 | |
| UNIPROTKB|P0ABU0 | 285 | menB [Escherichia coli K-12 (t | 0.821 | 0.954 | 0.654 | 2.7e-91 | |
| TIGR_CMR|BA_5109 | 272 | BA_5109 "naphthoate synthase" | 0.791 | 0.963 | 0.662 | 5.1e-90 | |
| UNIPROTKB|P23966 | 271 | menB "1,4-Dihydroxy-2-naphthoy | 0.791 | 0.966 | 0.651 | 1.7e-89 | |
| TIGR_CMR|SO_4739 | 300 | SO_4739 "naphthoate synthase" | 0.800 | 0.883 | 0.492 | 2.3e-64 | |
| UNIPROTKB|O06414 | 314 | menB "1,4-Dihydroxy-2-naphthoy | 0.619 | 0.652 | 0.490 | 4.2e-47 | |
| UNIPROTKB|A0QRD3 | 309 | menB "1,4-Dihydroxy-2-naphthoy | 0.619 | 0.663 | 0.476 | 1.3e-45 | |
| UNIPROTKB|A4YI89 | 259 | Msed_2001 "3-hydroxypropionyl- | 0.716 | 0.915 | 0.385 | 1.5e-35 |
| TAIR|locus:2036626 ECHID "enoyl-CoA hydratase/isomerase D" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1340 (476.8 bits), Expect = 7.4e-137, P = 7.4e-137
Identities = 257/332 (77%), Positives = 292/332 (87%)
Query: 4 QIDSARRRMTAVANHLVPVISSDSNSGFIGLNNAS-MNDSYHRIHGEVPSHDVVWR---I 59
++ SA RR++ V NHL+P+ S + + + L +AS M+D +H++HGEVP+H+VVW+
Sbjct: 6 ELGSASRRLSVVTNHLIPIGFSPARADSVELCSASSMDDRFHKVHGEVPTHEVVWKKTDF 65
Query: 60 ACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVI 119
+ EF DIIYEKA+ EGIAKITINRP+RRNAFRP TVKEL+RAFNDARDDSSVGVI
Sbjct: 66 FGEGDNKEFVDIIYEKALDEGIAKITINRPERRNAFRPQTVKELMRAFNDARDDSSVGVI 125
Query: 120 ILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179
ILTGKGT+AFCSGGDQALRT+DGYAD + GRLNVLDLQVQIRRLPKPVIAMVAGYAVGG
Sbjct: 126 ILTGKGTKAFCSGGDQALRTQDGYADPNDVGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 185
Query: 180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE 239
GH+LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWF+ RFYTA
Sbjct: 186 GHILHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFMTRFYTAS 245
Query: 240 EAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDA 299
EAEKMGL+NTVVPLE LE+ET+KW REILRNSPTAIRVLK+ALNAVDDGHAGLQ LGGDA
Sbjct: 246 EAEKMGLINTVVPLEDLEKETVKWCREILRNSPTAIRVLKAALNAVDDGHAGLQGLGGDA 305
Query: 300 TLIFYGTEEGSEGKTAFVERRRPDFLKFPRRP 331
TL+FYGTEE +EG+TA++ RR PDF KF RRP
Sbjct: 306 TLLFYGTEEATEGRTAYMHRRPPDFSKFHRRP 337
|
|
| UNIPROTKB|Q9KQM5 VC_1973 "Naphthoate synthase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
Identities = 184/278 (66%), Positives = 217/278 (78%)
Query: 55 VVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDS 114
V+W+ D +G ++ DI Y K+ +GIAKITI RP RNAFRP TVKE+I A DAR D
Sbjct: 24 VIWQ---DCTG-DYQDIHYHKS-DDGIAKITIARPQVRNAFRPLTVKEMIHALADARYDD 78
Query: 115 SVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173
VGVIILTG G +AFCSGGDQ +R GY D LNVLD Q QIR PKPVIA VA
Sbjct: 79 KVGVIILTGLGEDAFCSGGDQKIRGDYGGYRDDSGTHHLNVLDFQRQIRTCPKPVIAAVA 138
Query: 174 GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLA 233
G+AVGGGHVLHM+CDLTIAA+NA FGQTGPKVGSFD G+G+S M+R+VG KKARE+WFL
Sbjct: 139 GWAVGGGHVLHMMCDLTIAAENAQFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLC 198
Query: 234 RFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQ 293
RFY A+EA MGLVNTVVP+E+LE+ET++W RE+L++SP AIR LK+ALNA DG AGLQ
Sbjct: 199 RFYNAQEALDMGLVNTVVPVEELERETVRWCREVLQHSPMAIRCLKAALNADCDGQAGLQ 258
Query: 294 TLGGDATLIFYGTEEGSEGKTAFVERRRPDFLKFPRRP 331
L G+AT++FY TEEG EG+ AF E+RRPDF KFPR P
Sbjct: 259 ELAGNATMLFYMTEEGQEGRNAFNEKRRPDFNKFPRNP 296
|
|
| TIGR_CMR|VC_1973 VC_1973 "naphthoate synthase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
Identities = 184/278 (66%), Positives = 217/278 (78%)
Query: 55 VVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDS 114
V+W+ D +G ++ DI Y K+ +GIAKITI RP RNAFRP TVKE+I A DAR D
Sbjct: 24 VIWQ---DCTG-DYQDIHYHKS-DDGIAKITIARPQVRNAFRPLTVKEMIHALADARYDD 78
Query: 115 SVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173
VGVIILTG G +AFCSGGDQ +R GY D LNVLD Q QIR PKPVIA VA
Sbjct: 79 KVGVIILTGLGEDAFCSGGDQKIRGDYGGYRDDSGTHHLNVLDFQRQIRTCPKPVIAAVA 138
Query: 174 GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLA 233
G+AVGGGHVLHM+CDLTIAA+NA FGQTGPKVGSFD G+G+S M+R+VG KKARE+WFL
Sbjct: 139 GWAVGGGHVLHMMCDLTIAAENAQFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLC 198
Query: 234 RFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQ 293
RFY A+EA MGLVNTVVP+E+LE+ET++W RE+L++SP AIR LK+ALNA DG AGLQ
Sbjct: 199 RFYNAQEALDMGLVNTVVPVEELERETVRWCREVLQHSPMAIRCLKAALNADCDGQAGLQ 258
Query: 294 TLGGDATLIFYGTEEGSEGKTAFVERRRPDFLKFPRRP 331
L G+AT++FY TEEG EG+ AF E+RRPDF KFPR P
Sbjct: 259 ELAGNATMLFYMTEEGQEGRNAFNEKRRPDFNKFPRNP 296
|
|
| UNIPROTKB|P0ABU0 menB [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
Identities = 182/278 (65%), Positives = 215/278 (77%)
Query: 55 VVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDS 114
V W C E F DI YEK+ +GIAKITINRP RNAFRP TVKE+I+A DAR D
Sbjct: 13 VEWH-DCSEG---FEDIRYEKST-DGIAKITINRPQVRNAFRPLTVKEMIQALADARYDD 67
Query: 115 SVGVIILTGKGTEAFCSGGDQALR-TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173
++GVIILTG G +AFCSGGDQ +R GY D LNVLD Q QIR PKPV+AMVA
Sbjct: 68 NIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVA 127
Query: 174 GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLA 233
GY++GGGHVLHM+CDLTIAADNAIFGQTGPKVGSFD G+G+S M+R+VG KKARE+WFL
Sbjct: 128 GYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLC 187
Query: 234 RFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQ 293
R Y A++A MGLVNTVVPL LE+ET++W RE+L+NSP A+R LK+ALNA DG AGLQ
Sbjct: 188 RQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQ 247
Query: 294 TLGGDATLIFYGTEEGSEGKTAFVERRRPDFLKFPRRP 331
L G+AT++FY TEEG EG+ AF ++R+PDF KF R P
Sbjct: 248 ELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFKRNP 285
|
|
| TIGR_CMR|BA_5109 BA_5109 "naphthoate synthase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
Identities = 175/264 (66%), Positives = 209/264 (79%)
Query: 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
+ DIIY + GIAKI+INRP+ NAFRP TV ELI AF ARDD++VGVIILTG+G
Sbjct: 11 YEDIIY--STYNGIAKISINRPEVHNAFRPKTVMELIDAFAHARDDANVGVIILTGEGGR 68
Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
AFCSGGDQ +R GY + RLNVLDLQ IR +PKPVIAMVAGYA+GGGHVLH+VC
Sbjct: 69 AFCSGGDQKVRGHGGYVGDDQIPRLNVLDLQRLIRAIPKPVIAMVAGYAIGGGHVLHIVC 128
Query: 188 DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLV 247
DLTIAADNA+FGQTGPKVGSFD GYG+ ++R+VG KKARE+W+L R Y A+EA MGLV
Sbjct: 129 DLTIAADNAVFGQTGPKVGSFDGGYGAGYLARMVGHKKAREIWYLCRQYNAQEALDMGLV 188
Query: 248 NTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGTE 307
NTVVPLE+LE ET++W++EIL NSP A+R LK+A NA DG AG+Q L GDATL++Y T+
Sbjct: 189 NTVVPLEELEAETVQWAQEILANSPMALRFLKAAFNADTDGLAGIQQLAGDATLLYYTTD 248
Query: 308 EGSEGKTAFVERRRPDFLKFPRRP 331
E EG+ AF E+R PDF +FPR P
Sbjct: 249 EAKEGRDAFKEKRSPDFGQFPRFP 272
|
|
| UNIPROTKB|P23966 menB "1,4-Dihydroxy-2-naphthoyl-CoA synthase" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] | Back alignment and assigned GO terms |
|---|
Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
Identities = 172/264 (65%), Positives = 207/264 (78%)
Query: 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
+ +I+YE GIAKITINRP+ NAF P TV E+I AF DARDD +VGVI+L G G +
Sbjct: 10 YDEILYETY--NGIAKITINRPEVHNAFTPKTVAEMIDAFADARDDQNVGVIVLAGAGDK 67
Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
AFCSGGDQ +R GY + RLNVLDLQ IR +PKPV+AMV+GYA+GGGHVLH+VC
Sbjct: 68 AFCSGGDQKVRGHGGYVGDDQIPRLNVLDLQRLIRVIPKPVVAMVSGYAIGGGHVLHIVC 127
Query: 188 DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLV 247
DLTIAADNAIFGQTGPKVGSFDAGYGS ++R+VG KKARE+W+L R Y A+EA MGLV
Sbjct: 128 DLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLV 187
Query: 248 NTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGTE 307
NTVVPLE+LE+ETIKW E+L SPTA+R LK+A NA DG AG+Q GDATL++Y T+
Sbjct: 188 NTVVPLEQLEEETIKWCEEMLEKSPTALRFLKAAFNADTDGLAGIQQFAGDATLLYYTTD 247
Query: 308 EGSEGKTAFVERRRPDFLKFPRRP 331
E EG+ +F E+R+PDF +FPR P
Sbjct: 248 EAKEGRDSFKEKRKPDFGQFPRFP 271
|
|
| TIGR_CMR|SO_4739 SO_4739 "naphthoate synthase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 138/280 (49%), Positives = 183/280 (65%)
Query: 64 SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
+G FTDI Y +A G +I INRPD NAFRP TV EL A + AR S VG +LTG
Sbjct: 18 NGFNFTDITYHRAKAHGTVRIAINRPDCLNAFRPKTVDELYIALDHARQWSDVGCALLTG 77
Query: 124 KGTEA-----FCSGGDQALRTRDGY---------ADYENFGRLNVLDLQVQIRRLPKPVI 169
G A F SGGDQ +R +DGY AD GRL++L++Q IR +PK VI
Sbjct: 78 NGPSAKGQYSFSSGGDQRIRGKDGYKYEGAEEGKADLARMGRLHILEVQRLIRFMPKVVI 137
Query: 170 AMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228
A+V G+AVGGGH LH+VCDLT+A+ ++AIF QT P V SFD+GYGS+ +++++G K+ARE
Sbjct: 138 AVVPGWAVGGGHSLHVVCDLTLASKEHAIFKQTDPDVASFDSGYGSAYLAKMIGQKRARE 197
Query: 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG 288
++F Y+A+EA MG+VN VP +LE E ++W++EI SPTA+R+LK N DDG
Sbjct: 198 IFFCGFNYSADEAFAMGMVNKSVPHAELEVEALRWAKEINSKSPTAMRMLKYGFNMTDDG 257
Query: 289 HAGLQTLGGDATLIFYGTEEGSEGKTAFVERRRPDFLKFP 328
G Q G+AT + Y + E EG+ AF+E+R DF FP
Sbjct: 258 MVGQQLFAGEATRLAYASAEAQEGRDAFLEKRDQDFSAFP 297
|
|
| UNIPROTKB|O06414 menB "1,4-Dihydroxy-2-naphthoyl-CoA synthase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 106/216 (49%), Positives = 139/216 (64%)
Query: 125 GTEAFCSGGDQALRTRDGY----------ADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174
G AFCSGGDQ +R R GY D GRL++L++Q IR +PK VI +V G
Sbjct: 97 GGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNG 156
Query: 175 YAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLA 233
+A GGGH LH+VCDLT+A+ + A F QT VGSFD GYGS+ ++R VG K ARE++FL
Sbjct: 157 WAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLG 216
Query: 234 RFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQ 293
R YTAE+ +MG VN V +LE ++W+ EI SP A R+LK A N +DDG G Q
Sbjct: 217 RTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQRMLKFAFNLLDDGLVGQQ 276
Query: 294 TLGGDATLIFYGTEEGSEGKTAFVERRRPDFLKFPR 329
G+AT + Y T+E EG+ AF+++R PD+ FPR
Sbjct: 277 LFAGEATRLAYMTDEAVEGRDAFLQKRPPDWSPFPR 312
|
|
| UNIPROTKB|A0QRD3 menB "1,4-Dihydroxy-2-naphthoyl-CoA synthase" [Mycobacterium smegmatis str. MC2 155 (taxid:246196)] | Back alignment and assigned GO terms |
|---|
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 103/216 (47%), Positives = 139/216 (64%)
Query: 125 GTEAFCSGGDQALRTRDGY----------ADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174
G AFCSGGDQ +R R GY D GRL++L++Q IR +PK VI +V G
Sbjct: 92 GGWAFCSGGDQRIRGRTGYQYASGETAETVDPARAGRLHILEVQRLIRFMPKVVICLVNG 151
Query: 175 YAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLA 233
+A GGGH LH+ CDLT+A+ ++A F QT VGSFD G+GS+ ++R G K ARE++FL
Sbjct: 152 WAAGGGHSLHVTCDLTLASREHARFKQTDADVGSFDGGFGSAYLARQTGQKFAREIFFLG 211
Query: 234 RFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQ 293
R Y A+ +MG VN VV LE+ ++++ EI SP AIR+LK A N +DDG G Q
Sbjct: 212 RAYDAQTMHQMGAVNEVVDHADLEKAGLQYAAEINGKSPQAIRMLKFAFNLIDDGLVGQQ 271
Query: 294 TLGGDATLIFYGTEEGSEGKTAFVERRRPDFLKFPR 329
G+AT + Y T+E EG+ AF+E+R PD+ +FPR
Sbjct: 272 VFAGEATRLAYMTDEAVEGRDAFLEKRDPDWSRFPR 307
|
|
| UNIPROTKB|A4YI89 Msed_2001 "3-hydroxypropionyl-coenzyme A dehydratase" [Metallosphaera sedula DSM 5348 (taxid:399549)] | Back alignment and assigned GO terms |
|---|
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 94/244 (38%), Positives = 139/244 (56%)
Query: 84 ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143
IT+NRPD+ NA ++EL RA + A D + VII+TGKG +AFC+G D +
Sbjct: 17 ITLNRPDKLNALNAKLLEELDRAVSQAESDPEIRVIIITGKG-KAFCAGADITQFNQLTP 75
Query: 144 ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGP 203
A+ F + ++ +I L KP IAM+ GYA+GGG L + CD+ IAA+ A G
Sbjct: 76 AEAWKFSKKG-REIMDKIEALSKPTIAMINGYALGGGLELALACDIRIAAEEAQLGLPEI 134
Query: 204 KVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIK 262
+G + GYG + ++R++G +A EM ++AEK GLVN VVPL LEQET K
Sbjct: 135 NLGIYP-GYGGTQRLTRVIGKGRALEMMMTGDRIPGKDAEKYGLVNRVVPLANLEQETRK 193
Query: 263 WSREILRNSPTAIRVLKSALNAVDDGH--AGLQTLGGDATLIFYGTEEGSEGKTAFVERR 320
+ +I + SP ++ ++K +N D +GL L + + TE+ EG +AF+E+R
Sbjct: 194 LAEKIAKKSPISLALIKEVVNRGLDSPLLSGL-ALESVGWGVVFSTEDKKEGVSAFLEKR 252
Query: 321 RPDF 324
P F
Sbjct: 253 EPTF 256
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q49WG8 | MENB_STAS1 | 4, ., 1, ., 3, ., 3, 6 | 0.6208 | 0.8066 | 0.9816 | yes | no |
| Q8NXA0 | MENB_STAAW | 4, ., 1, ., 3, ., 3, 6 | 0.6431 | 0.8066 | 0.9780 | yes | no |
| Q4L549 | MENB_STAHJ | 4, ., 1, ., 3, ., 3, 6 | 0.6319 | 0.8066 | 0.9816 | yes | no |
| Q9CLV5 | MENB_PASMU | 4, ., 1, ., 3, ., 3, 6 | 0.6466 | 0.8459 | 0.9824 | yes | no |
| Q7A6A9 | MENB_STAAN | 4, ., 1, ., 3, ., 3, 6 | 0.6394 | 0.8066 | 0.9780 | yes | no |
| Q8CPQ4 | MENB_STAES | 4, ., 1, ., 3, ., 3, 6 | 0.6415 | 0.7945 | 0.9669 | yes | no |
| O06414 | MENB_MYCTU | 4, ., 1, ., 3, ., 3, 6 | 0.4689 | 0.8187 | 0.8630 | yes | no |
| Q6GI37 | MENB_STAAR | 4, ., 1, ., 3, ., 3, 6 | 0.6431 | 0.8066 | 0.9780 | yes | no |
| Q7CQ56 | MENB_SALTY | 4, ., 1, ., 3, ., 3, 6 | 0.6341 | 0.8338 | 0.9684 | yes | no |
| Q5HH38 | MENB_STAAC | 4, ., 1, ., 3, ., 3, 6 | 0.6431 | 0.8066 | 0.9780 | yes | no |
| Q99V48 | MENB_STAAM | 4, ., 1, ., 3, ., 3, 6 | 0.6394 | 0.8066 | 0.9780 | yes | no |
| Q8GYN9 | MENB_ARATH | 4, ., 1, ., 3, ., 3, 6 | 0.7740 | 0.9909 | 0.9732 | yes | no |
| Q5HQC3 | MENB_STAEQ | 4, ., 1, ., 3, ., 3, 6 | 0.6356 | 0.8066 | 0.9816 | yes | no |
| P0ABU0 | MENB_ECOLI | 4, ., 1, ., 3, ., 3, 6 | 0.6376 | 0.8338 | 0.9684 | N/A | no |
| P0ABU1 | MENB_ECOL6 | 4, ., 1, ., 3, ., 3, 6 | 0.6376 | 0.8338 | 0.9684 | yes | no |
| P44960 | MENB_HAEIN | 4, ., 1, ., 3, ., 3, 6 | 0.6716 | 0.7945 | 0.9228 | yes | no |
| P23966 | MENB_BACSU | 4, ., 1, ., 3, ., 3, 6 | 0.6515 | 0.7915 | 0.9667 | yes | no |
| Q6GAG7 | MENB_STAAS | 4, ., 1, ., 3, ., 3, 6 | 0.6431 | 0.8066 | 0.9780 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 4.1.3.36 | 0.946 |
| 3rd Layer | 4.1.3 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 331 | |||
| PLN02921 | 327 | PLN02921, PLN02921, naphthoate synthase | 0.0 | |
| PRK07396 | 273 | PRK07396, PRK07396, dihydroxynaphthoic acid synthe | 0.0 | |
| COG0447 | 282 | COG0447, MenB, Dihydroxynaphthoic acid synthase [C | 1e-162 | |
| TIGR01929 | 259 | TIGR01929, menB, naphthoate synthase (dihydroxynap | 1e-144 | |
| PRK08321 | 302 | PRK08321, PRK08321, naphthoate synthase; Validated | 1e-120 | |
| TIGR03210 | 256 | TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd | 9e-92 | |
| pfam00378 | 245 | pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami | 6e-74 | |
| cd06558 | 195 | cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme | 4e-64 | |
| COG1024 | 257 | COG1024, CaiD, Enoyl-CoA hydratase/carnithine race | 2e-56 | |
| PRK06688 | 259 | PRK06688, PRK06688, enoyl-CoA hydratase; Provision | 2e-53 | |
| PRK05809 | 260 | PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata | 1e-51 | |
| PRK05995 | 262 | PRK05995, PRK05995, enoyl-CoA hydratase; Provision | 2e-46 | |
| PRK07657 | 260 | PRK07657, PRK07657, enoyl-CoA hydratase; Provision | 4e-46 | |
| PRK05862 | 257 | PRK05862, PRK05862, enoyl-CoA hydratase; Provision | 5e-43 | |
| PRK06494 | 259 | PRK06494, PRK06494, enoyl-CoA hydratase; Provision | 6e-43 | |
| PRK06210 | 272 | PRK06210, PRK06210, enoyl-CoA hydratase; Provision | 3e-41 | |
| PRK06127 | 269 | PRK06127, PRK06127, enoyl-CoA hydratase; Provision | 1e-40 | |
| PRK08139 | 266 | PRK08139, PRK08139, enoyl-CoA hydratase; Validated | 2e-40 | |
| PRK08290 | 288 | PRK08290, PRK08290, enoyl-CoA hydratase; Provision | 2e-38 | |
| PRK08138 | 261 | PRK08138, PRK08138, enoyl-CoA hydratase; Provision | 3e-38 | |
| PRK06144 | 262 | PRK06144, PRK06144, enoyl-CoA hydratase; Provision | 2e-37 | |
| PRK09245 | 266 | PRK09245, PRK09245, enoyl-CoA hydratase; Provision | 3e-35 | |
| PRK11423 | 261 | PRK11423, PRK11423, methylmalonyl-CoA decarboxylas | 3e-35 | |
| PLN02888 | 265 | PLN02888, PLN02888, enoyl-CoA hydratase | 6e-35 | |
| PRK05980 | 260 | PRK05980, PRK05980, enoyl-CoA hydratase; Provision | 2e-34 | |
| PRK07511 | 260 | PRK07511, PRK07511, enoyl-CoA hydratase; Provision | 2e-34 | |
| PRK09120 | 275 | PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata | 1e-33 | |
| PRK07468 | 262 | PRK07468, PRK07468, enoyl-CoA hydratase; Provision | 2e-33 | |
| PRK03580 | 261 | PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr | 2e-33 | |
| PRK08260 | 296 | PRK08260, PRK08260, enoyl-CoA hydratase; Provision | 3e-33 | |
| PRK07658 | 257 | PRK07658, PRK07658, enoyl-CoA hydratase; Provision | 6e-33 | |
| PRK06190 | 258 | PRK06190, PRK06190, enoyl-CoA hydratase; Provision | 2e-32 | |
| PRK08140 | 262 | PRK08140, PRK08140, enoyl-CoA hydratase; Provision | 7e-32 | |
| PRK09674 | 255 | PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; | 1e-31 | |
| PRK08258 | 277 | PRK08258, PRK08258, enoyl-CoA hydratase; Provision | 8e-31 | |
| PRK05674 | 265 | PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr | 1e-30 | |
| PRK06495 | 257 | PRK06495, PRK06495, enoyl-CoA hydratase; Provision | 8e-30 | |
| PLN02600 | 251 | PLN02600, PLN02600, enoyl-CoA hydratase | 2e-29 | |
| PRK06142 | 272 | PRK06142, PRK06142, enoyl-CoA hydratase; Provision | 2e-29 | |
| PRK07327 | 268 | PRK07327, PRK07327, enoyl-CoA hydratase; Provision | 5e-28 | |
| PRK07854 | 243 | PRK07854, PRK07854, enoyl-CoA hydratase; Provision | 3e-27 | |
| PRK05864 | 276 | PRK05864, PRK05864, enoyl-CoA hydratase; Provision | 5e-27 | |
| PRK06563 | 255 | PRK06563, PRK06563, enoyl-CoA hydratase; Provision | 6e-27 | |
| PRK07110 | 249 | PRK07110, PRK07110, polyketide biosynthesis enoyl- | 7e-27 | |
| TIGR03200 | 360 | TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-car | 7e-27 | |
| PRK07938 | 249 | PRK07938, PRK07938, enoyl-CoA hydratase; Provision | 1e-26 | |
| PRK08272 | 302 | PRK08272, PRK08272, enoyl-CoA hydratase; Provision | 4e-26 | |
| PRK05869 | 222 | PRK05869, PRK05869, enoyl-CoA hydratase; Validated | 8e-26 | |
| PRK05981 | 266 | PRK05981, PRK05981, enoyl-CoA hydratase; Provision | 1e-25 | |
| PRK05870 | 249 | PRK05870, PRK05870, enoyl-CoA hydratase; Provision | 2e-25 | |
| PRK08252 | 254 | PRK08252, PRK08252, enoyl-CoA hydratase; Provision | 4e-25 | |
| PRK07799 | 263 | PRK07799, PRK07799, enoyl-CoA hydratase; Provision | 5e-25 | |
| TIGR02280 | 256 | TIGR02280, PaaB1, phenylacetate degradation probab | 2e-24 | |
| PRK07260 | 255 | PRK07260, PRK07260, enoyl-CoA hydratase; Provision | 4e-24 | |
| PRK07509 | 262 | PRK07509, PRK07509, enoyl-CoA hydratase; Provision | 3e-23 | |
| PRK08259 | 254 | PRK08259, PRK08259, enoyl-CoA hydratase; Provision | 6e-23 | |
| PRK07827 | 260 | PRK07827, PRK07827, enoyl-CoA hydratase; Provision | 1e-21 | |
| PRK12478 | 298 | PRK12478, PRK12478, enoyl-CoA hydratase; Provision | 1e-21 | |
| PRK06143 | 256 | PRK06143, PRK06143, enoyl-CoA hydratase; Provision | 3e-21 | |
| PRK08150 | 255 | PRK08150, PRK08150, enoyl-CoA hydratase; Provision | 2e-19 | |
| PRK09076 | 258 | PRK09076, PRK09076, enoyl-CoA hydratase; Provision | 3e-19 | |
| PRK06023 | 251 | PRK06023, PRK06023, enoyl-CoA hydratase; Provision | 3e-19 | |
| PRK07659 | 260 | PRK07659, PRK07659, enoyl-CoA hydratase; Provision | 7e-18 | |
| PRK06072 | 248 | PRK06072, PRK06072, enoyl-CoA hydratase; Provision | 3e-17 | |
| PLN02664 | 275 | PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d | 1e-15 | |
| PRK11154 | 708 | PRK11154, fadJ, multifunctional fatty acid oxidati | 5e-14 | |
| TIGR02437 | 714 | TIGR02437, FadB, fatty oxidation complex, alpha su | 5e-14 | |
| PRK11730 | 715 | PRK11730, fadB, multifunctional fatty acid oxidati | 1e-12 | |
| TIGR02440 | 699 | TIGR02440, FadJ, fatty oxidation complex, alpha su | 1e-12 | |
| PRK08788 | 287 | PRK08788, PRK08788, enoyl-CoA hydratase; Validated | 4e-11 | |
| PLN02988 | 381 | PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol | 5e-10 | |
| PRK05617 | 342 | PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol | 6e-10 | |
| PRK07112 | 255 | PRK07112, PRK07112, polyketide biosynthesis enoyl- | 3e-09 | |
| PLN02874 | 379 | PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol | 1e-08 | |
| TIGR03189 | 251 | TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecar | 2e-08 | |
| TIGR02441 | 737 | TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c | 2e-08 | |
| PLN02157 | 401 | PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol | 3e-07 | |
| PLN02851 | 407 | PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol | 3e-06 | |
| PLN03214 | 278 | PLN03214, PLN03214, probable enoyl-CoA hydratase/i | 1e-05 | |
| PRK06213 | 229 | PRK06213, PRK06213, enoyl-CoA hydratase; Provision | 8e-05 |
| >gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase | Back alignment and domain information |
|---|
Score = 619 bits (1599), Expect = 0.0
Identities = 255/326 (78%), Positives = 283/326 (86%)
Query: 6 DSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESG 65
D+ARRR+ VANHLVP + S + + + DSY R+HG+V S VVWR D SG
Sbjct: 2 DAARRRLARVANHLVPSANPASMAAARSSSATAPPDSYRRVHGDVSSEPVVWRKVPDGSG 61
Query: 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
EFTDIIYEKAVGEGIAKITINRP+RRNAFRP TVKEL RAFNDARDDSSVGVIILTGKG
Sbjct: 62 KEFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKG 121
Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
T+AFCSGGDQA+R +DGY ++ GRLNVLDLQ+QIRRLPKPVIAMVAGYAVGGGH+LHM
Sbjct: 122 TKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHM 181
Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMG 245
VCDLTIAADNA+FGQTGPKVGSFDAGYGSSIM+RLVG KKAREMWFLARFYTA EA KMG
Sbjct: 182 VCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMG 241
Query: 246 LVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYG 305
LVNTVVPL++LE ET+KW REILRNSPTAIRVLKSALNA DDGHAGLQ LGG+ATL+FYG
Sbjct: 242 LVNTVVPLDELEGETVKWCREILRNSPTAIRVLKSALNAADDGHAGLQELGGNATLLFYG 301
Query: 306 TEEGSEGKTAFVERRRPDFLKFPRRP 331
+EEG+EG+TA++E R PDF KFPR P
Sbjct: 302 SEEGNEGRTAYLEGRAPDFSKFPRLP 327
|
Length = 327 |
| >gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Score = 512 bits (1321), Expect = 0.0
Identities = 184/265 (69%), Positives = 216/265 (81%), Gaps = 2/265 (0%)
Query: 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
E+ DI+Y+ A +GIAKITINRP+ RNAFRP TVKE+I AF DARDD ++GVIILTG G
Sbjct: 11 EYEDILYKSA--DGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGD 68
Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
+AFCSGGDQ +R GY D + RLNVLDLQ IR PKPVIAMVAGYA+GGGHVLH+V
Sbjct: 69 KAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLV 128
Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
CDLTIAADNAIFGQTGPKVGSFD GYG+S ++R+VG KKARE+WFL R Y A+EA MGL
Sbjct: 129 CDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGL 188
Query: 247 VNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGT 306
VNTVVPL LE+ET++W RE+L+NSP A+R LK+ALNA DG AGLQ L G+AT++FY T
Sbjct: 189 VNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMT 248
Query: 307 EEGSEGKTAFVERRRPDFLKFPRRP 331
EE EG+ AF E+R+PDF KFPR P
Sbjct: 249 EEAQEGRNAFNEKRQPDFSKFPRFP 273
|
Length = 273 |
| >gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 453 bits (1166), Expect = e-162
Identities = 183/268 (68%), Positives = 215/268 (80%), Gaps = 4/268 (1%)
Query: 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK-- 124
+ DI YEK+V GIAKITINRP+ RNAFRP TV E+I AF DARDD +VGVI+LTG
Sbjct: 16 GYEDITYEKSVD-GIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGD 74
Query: 125 GTEAFCSGGDQALRTRD-GYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
G +AFCSGGDQ +R GY D + RLNVLDLQ IR +PKPVIAMVAGYA+GGGHVL
Sbjct: 75 GDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVL 134
Query: 184 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEK 243
H+VCDLTIAADNAIFGQTGPKVGSFD GYGSS ++R+VG KKARE+WFL R Y AEEA
Sbjct: 135 HVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALD 194
Query: 244 MGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIF 303
MGLVNTVVP LE+ET++W+RE+L SPTA+R+LK+A NA DG AGLQ L G+ATL++
Sbjct: 195 MGLVNTVVPHADLEKETVQWAREMLAKSPTALRMLKAAFNADCDGLAGLQELAGNATLLY 254
Query: 304 YGTEEGSEGKTAFVERRRPDFLKFPRRP 331
Y T+E EG+ AF+E+R+PDF KFPR P
Sbjct: 255 YMTDEAQEGRDAFLEKRKPDFSKFPRNP 282
|
Length = 282 |
| >gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Score = 408 bits (1049), Expect = e-144
Identities = 179/260 (68%), Positives = 211/260 (81%), Gaps = 1/260 (0%)
Query: 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
F DI YEK+ +GIAKITINRP RNAFRP TVKE+I+A +DAR+D +GV+ILTG G +
Sbjct: 1 FEDIRYEKST-DGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDK 59
Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
AFCSGGDQ +R GY D RLNVLD+Q QIR PKPVIAMV GYA+GGGHVLHM+C
Sbjct: 60 AFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHMMC 119
Query: 188 DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLV 247
DLTIAA+NA FGQTGPKVGSFD GYGSS M+R+VG KKARE+WFL R Y A++A MGLV
Sbjct: 120 DLTIAAENARFGQTGPKVGSFDGGYGSSYMARIVGQKKAREIWFLCRQYDAKQALDMGLV 179
Query: 248 NTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGTE 307
NTVVPL LE+ET++W REIL+ SP AIR+LK+ALNA DG AGLQ L G+AT++FY TE
Sbjct: 180 NTVVPLADLEKETVRWCREILQKSPMAIRMLKAALNADCDGQAGLQELAGNATMLFYMTE 239
Query: 308 EGSEGKTAFVERRRPDFLKF 327
EG EG+ AF+E+R+PDF KF
Sbjct: 240 EGQEGRNAFLEKRQPDFSKF 259
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259 |
| >gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated | Back alignment and domain information |
|---|
Score = 348 bits (894), Expect = e-120
Identities = 146/283 (51%), Positives = 186/283 (65%), Gaps = 17/283 (6%)
Query: 64 SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
G +FTDI Y +AV +G +I +RP+ RNAFRPHTV EL RA + AR VG ++LTG
Sbjct: 18 PGFDFTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTG 77
Query: 124 KGTE------AFCSGGDQALRTRDGY----------ADYENFGRLNVLDLQVQIRRLPKP 167
G AFCSGGDQ +R RDGY D GRL++L++Q IR +PK
Sbjct: 78 NGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKV 137
Query: 168 VIAMVAGYAVGGGHVLHMVCDLTIA-ADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226
VIA+V G+A GGGH LH+VCDLT+A ++A F QT VGSFD GYGS+ ++R VG K A
Sbjct: 138 VIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVGQKFA 197
Query: 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVD 286
RE++FL R Y+AEEA MG VN VVP +LE E ++W+REI SPTA+R+LK A N D
Sbjct: 198 REIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMRMLKYAFNLTD 257
Query: 287 DGHAGLQTLGGDATLIFYGTEEGSEGKTAFVERRRPDFLKFPR 329
DG G Q G+AT + Y T+E EG+ AF+E+R PD+ FP
Sbjct: 258 DGLVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDWSDFPW 300
|
Length = 302 |
| >gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 273 bits (700), Expect = 9e-92
Identities = 135/261 (51%), Positives = 175/261 (67%), Gaps = 6/261 (2%)
Query: 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
+ DI+YEK GIA I INRP + NAFR T ELI A DA D +GVI+L G G +
Sbjct: 1 YEDILYEKR--NGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDK 58
Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
AFC+GGDQ+ T DG D L + +L IR +PKPVIA V GYA+GGG+VL +C
Sbjct: 59 AFCTGGDQS--THDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTIC 116
Query: 188 DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLV 247
DLTIA++ A FGQ GPKVGS D GYG+++++R+VG KKARE+W+L R YTA+EA MGLV
Sbjct: 117 DLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLV 176
Query: 248 NTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH-AGLQTLGGDATLIFYGT 306
N VVP ++L+ E KW EI+ SPTAI + K + N +D H G+ +G A ++Y T
Sbjct: 177 NAVVPHDQLDAEVQKWCDEIVEKSPTAIAIAKRSFN-MDTAHQRGIAGMGMYALKLYYDT 235
Query: 307 EEGSEGKTAFVERRRPDFLKF 327
E EG AF E+R+P+F K+
Sbjct: 236 AESREGVKAFQEKRKPEFRKY 256
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256 |
| >gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family | Back alignment and domain information |
|---|
Score = 227 bits (582), Expect = 6e-74
Identities = 89/244 (36%), Positives = 127/244 (52%), Gaps = 3/244 (1%)
Query: 77 VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
+ G+A I ++RP+ NA + ELI+A D SV I+LTG AF +G D
Sbjct: 4 LEAGVAVIKLDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGGP-GAFSAGADIK 62
Query: 137 LRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
+ A F L DL ++ LPKPVIA V GYA+GGG L + CD IAADNA
Sbjct: 63 EMAAEPLAQQAQF-SLEAQDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNA 121
Query: 197 IFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKL 256
FG K+G G+ + R++G A EM R A+EA KMGLV+ VVP E+L
Sbjct: 122 KFGLPEVKLGIIPGAGGTQRLPRIIGVSAALEMLLTGRRIRAQEALKMGLVDKVVPEEQL 181
Query: 257 EQETIKWSREILRNSPTAIRVLKSALNAV-DDGHAGLQTLGGDATLIFYGTEEGSEGKTA 315
+E I+ ++ + P A+ LK+A+ A +D ++ + T++ EG A
Sbjct: 182 VEEAIELAQRLADKPPLALAALKAAMRAALEDALPEVRAQALRLYPAPFSTDDVKEGIQA 241
Query: 316 FVER 319
F+E+
Sbjct: 242 FLEK 245
|
This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245 |
| >gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 4e-64
Identities = 78/198 (39%), Positives = 116/198 (58%), Gaps = 4/198 (2%)
Query: 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
++ E+ G+A IT+NRP++RNA + EL A ++A D V V++LTG G +AFC
Sbjct: 1 VLVER--DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAG-KAFC 57
Query: 131 SGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL 189
+G D + L + + +L + RLPKPVIA V G A+GGG L + CD+
Sbjct: 58 AGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDI 117
Query: 190 TIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNT 249
IAA++A FG K+G G G+ + RLVGP +ARE+ R +AEEA ++GLV+
Sbjct: 118 RIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDE 177
Query: 250 VVPLEKLEQETIKWSREI 267
VVP E+L ++ +R +
Sbjct: 178 VVPDEELLAAALELARRL 195
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195 |
| >gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 2e-56
Identities = 89/262 (33%), Positives = 137/262 (52%), Gaps = 9/262 (3%)
Query: 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
T + I+ E +GIA IT+NRP++ NA + EL A ++A D V V++LTG G
Sbjct: 2 TTYETILVE--REDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAG 59
Query: 126 TEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
AF +G D + L + + EN + L+ + LPKPVIA V GYA+GGG L
Sbjct: 60 K-AFSAGADLKELLSPEDGNAAENLMQPGQDLLR-ALADLPKPVIAAVNGYALGGGLELA 117
Query: 185 MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKM 244
+ CD+ IAA++A FG +G G+ + RL+G +A+E+ +A EA ++
Sbjct: 118 LACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALEL 177
Query: 245 GLVNTVVPL-EKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH-AGLQTLGGDATLI 302
GLV+ VVP E+L + ++ +R + P A+ K + A + A A
Sbjct: 178 GLVDEVVPDAEELLERALELARRLAA-PPLALAATKRLVRAALEADLAEALEAEALAFAR 236
Query: 303 FYGTEEGSEGKTAFVERRRPDF 324
+ +E+ EG AF+E R+P F
Sbjct: 237 LFSSEDFREGVRAFLE-RKPVF 257
|
Length = 257 |
| >gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 2e-53
Identities = 95/267 (35%), Positives = 135/267 (50%), Gaps = 20/267 (7%)
Query: 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEA 128
TD++ E +G+ ITINRPD++NA + L A A D +V V++LTG G A
Sbjct: 5 TDLLVELE--DGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAG-RA 61
Query: 129 FCSGGDQALRTRDGYADYENFGRLNVLDLQV-----QIRRLPKPVIAMVAGYAVGGGHVL 183
F +GGD + + V I LPKPV+A V G AVG G L
Sbjct: 62 FSAGGDIK-------DFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSL 114
Query: 184 HMVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
+ CDL A+++A F K+G DAG GS+++ RL+G +A EM L +AEEA
Sbjct: 115 ALACDLVYASESAKFSLPFAKLGLCPDAG-GSALLPRLIGRARAAEMLLLGEPLSAEEAL 173
Query: 243 KMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH--AGLQTLGGDAT 300
++GLVN VVP +L+ E + ++ +A+R K A+NA L
Sbjct: 174 RIGLVNRVVPAAELDAEADAQAAKLAAGPASALRYTKRAINAATLTELEEALAREAAGFG 233
Query: 301 LIFYGTEEGSEGKTAFVERRRPDFLKF 327
+ T + EG TAF+E+R+PDF F
Sbjct: 234 RLL-RTPDFREGATAFIEKRKPDFTGF 259
|
Length = 259 |
| >gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 1e-51
Identities = 101/270 (37%), Positives = 149/270 (55%), Gaps = 26/270 (9%)
Query: 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
E ++I EK IA +TINRP NA T+KEL +D +D +V +ILTG G
Sbjct: 2 ELKNVILEKE--GHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGE 59
Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQV--QIRRLPKPVIAMVAGYAVGGGHVLH 184
+AF +G D + + FG +L +V ++ L KPVIA + G+A+GGG L
Sbjct: 60 KAFVAGADISEMKDLNEEEGRKFG---LLGNKVFRKLENLDKPVIAAINGFALGGGCELS 116
Query: 185 MVCDLTIAADNAIFGQTGPKVG-SFDAGY-GSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
M CD+ IA++ A FGQ P+VG G+ G+ ++R+VGP KA+E+ + AEEA
Sbjct: 117 MACDIRIASEKAKFGQ--PEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEAL 174
Query: 243 KMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLI 302
++GLVN VV EKL +E + +I N+P A+++ K A+N G+Q D +
Sbjct: 175 RIGLVNKVVEPEKLMEEAKALANKIAANAPIAVKLCKDAIN------RGMQV-DIDTAVA 227
Query: 303 F--------YGTEEGSEGKTAFVERRRPDF 324
+ TE+ +EG TAFVE+R +F
Sbjct: 228 IEAEDFGECFSTEDQTEGMTAFVEKREKNF 257
|
Length = 260 |
| >gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 2e-46
Identities = 93/262 (35%), Positives = 130/262 (49%), Gaps = 22/262 (8%)
Query: 76 AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD- 134
+A +T+NRPD RNAF + EL AF D SV ++L G G +AFC+G D
Sbjct: 9 EQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAG-KAFCAGADL 67
Query: 135 QALRTRDGYADYENFGRLNVL-DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
++ GY+D EN L D+ I R PKPVIA V G A GG L CD+ +AA
Sbjct: 68 NWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAA 127
Query: 194 DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPL 253
D+A+F + ++G A S + R +G + AR + A + A EA ++GLV+ VVP
Sbjct: 128 DHAVFCLSEVRLGLIPATI-SPYVIRAMGERAARRYFLTAERFDAAEALRLGLVHEVVPA 186
Query: 254 EKLEQETIKW-SREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLI---------F 303
E L+ + ++ NSP A+R K + V DA LI
Sbjct: 187 EALD-AKVDELLAALVANSPQAVRAGKRLVRDVAG-------RPIDAALIADTASRIALI 238
Query: 304 YGTEEGSEGKTAFVERRRPDFL 325
TEE EG AF+E+R+P +
Sbjct: 239 RATEEAREGVAAFLEKRKPAWR 260
|
Length = 262 |
| >gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 4e-46
Identities = 87/253 (34%), Positives = 139/253 (54%), Gaps = 14/253 (5%)
Query: 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
+ KIT+NRP NA ++EL ++++V V+ILTG G +AFC+G D L+
Sbjct: 12 PHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGAD--LK 69
Query: 139 TRDGYADYENFGRLNVLDLQ---VQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN 195
R G + + R V ++ + +LP+PVIA + G A+GGG L + CD IAA++
Sbjct: 70 ERAGMNEEQ--VRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAES 127
Query: 196 AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEK 255
A G T + G+ + RL+G +A+E+ + R +A+EA+++GLV VVP
Sbjct: 128 ASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHL 187
Query: 256 LEQETIKWSREILRNSPTAIRVLKSALNAV--DDGHAGLQ--TLGGDATLIFYGTEEGSE 311
LE++ I+ + +I N P A+R K A++ D H GLQ + T+ T++ E
Sbjct: 188 LEEKAIEIAEKIASNGPIAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTI---PTKDRLE 244
Query: 312 GKTAFVERRRPDF 324
G AF E+R+P +
Sbjct: 245 GLQAFKEKRKPMY 257
|
Length = 260 |
| >gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 5e-43
Identities = 96/255 (37%), Positives = 128/255 (50%), Gaps = 31/255 (12%)
Query: 84 ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD----QALRT 139
IT+NRP NA + EL A D +G I++TG +AF +G D L
Sbjct: 17 ITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGS-EKAFAAGADIKEMADLSF 75
Query: 140 RDGY-ADY-ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAI 197
D Y DY N+ + + R+ KPVIA VAGYA+GGG L M+CD+ IAAD A
Sbjct: 76 MDVYKGDYITNWEK---------VARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAK 126
Query: 198 FGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLE 257
FGQ K+G GS ++R VG KA ++ R A EAE+ GLV+ VVP +KL
Sbjct: 127 FGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKLL 186
Query: 258 QETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIF--------YGTEEG 309
E + + I S A+ + K A+N A TL L+F + TE+
Sbjct: 187 DEALAAATTIASFSLPAVMMAKEAVNR-----AYETTL--AEGLLFERRLFHSLFATEDQ 239
Query: 310 SEGKTAFVERRRPDF 324
EG AFVE+R+P F
Sbjct: 240 KEGMAAFVEKRKPVF 254
|
Length = 257 |
| >gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 6e-43
Identities = 85/254 (33%), Positives = 115/254 (45%), Gaps = 21/254 (8%)
Query: 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD---Q 135
+ +T+NRP+ NA EL F+D D V I+TG G +AF +G D Q
Sbjct: 12 GHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQ 71
Query: 136 ALRTRDGYADYENFGRLNVLDLQVQIRR--LPKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
A + G FG L R L KP+IA V G A+GGG L + CDL +AA
Sbjct: 72 AAGGKRG-WPESGFGGLT--------SRFDLDKPIIAAVNGVAMGGGFELALACDLIVAA 122
Query: 194 DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPL 253
+NA F P+VG G + R +G K+A M R TA E ++G VN VVP
Sbjct: 123 ENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPA 182
Query: 254 EKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGD-----ATLIFYGTEE 308
+L +W+ +IL SP +IR K A L+ A +++
Sbjct: 183 GELLAAAERWADDILACSPLSIRASKQA--VYRGLEVSLEEAITAQRDYPAVEARRASQD 240
Query: 309 GSEGKTAFVERRRP 322
EG AF E+R P
Sbjct: 241 YIEGPKAFAEKRPP 254
|
Length = 259 |
| >gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 3e-41
Identities = 97/280 (34%), Positives = 138/280 (49%), Gaps = 35/280 (12%)
Query: 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
+ ++YE A G+A IT+NRPDR NA+ P E+ A + A D +V VI+LTG G
Sbjct: 3 AYDAVLYEVA-DSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAG- 60
Query: 127 EAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRR------------LPKPVIAMVA 173
FC+G D L+T D R + V RR L KPVIA +
Sbjct: 61 RGFCAGADMGELQTIDPSDG----RRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAIN 116
Query: 174 GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSS-IMSRLVGPKKAREMWFL 232
G G G ++CD+ AAD A F + G A +G S I+ RLVG A ++
Sbjct: 117 GACAGIGLTHALMCDVRFAADGAKFTTAFARRGLI-AEHGISWILPRLVGHANALDLLLS 175
Query: 233 ARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRN-SPTAIRVLKSALNAVDDGHAG 291
AR + AEEA ++GLVN VVP ++L + T+ ++ ++ RN SP ++ V+K L
Sbjct: 176 ARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPASMAVIKRQLYED-----A 230
Query: 292 LQTLGGDATL-------IFYGTEEGSEGKTAFVERRRPDF 324
QTL +AT + EG +F+E+R P F
Sbjct: 231 FQTL-AEATARANREMHESLQRPDFIEGVASFLEKRPPRF 269
|
Length = 272 |
| >gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 1e-40
Identities = 82/263 (31%), Positives = 132/263 (50%), Gaps = 18/263 (6%)
Query: 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
++ EK G+ +IT N P R NA + L +A A DD ++ V++LTG G +AF
Sbjct: 13 LLAEKT--GGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFV 70
Query: 131 SGGD-----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
SG D ++ + A YE V Q + KP IA + GY +GGG + +
Sbjct: 71 SGADISQFEESRSDAEAVAAYEQ----AVEAAQAALADYAKPTIACIRGYCIGGGMGIAL 126
Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL---VGPKKAREMWFLARFYTAEEAE 242
CD+ IAA+++ FG ++G GYG + L VGP A+++++ AR + A EA
Sbjct: 127 ACDIRIAAEDSRFGIPAARLG---LGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEAL 183
Query: 243 KMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLI 302
++GLV+ V + LE ++ I N+P +R K A+ + A +
Sbjct: 184 RIGLVHRVTAADDLETALADYAATIAGNAPLTLRAAKRAIAELLKDEPERDMAACQALVA 243
Query: 303 -FYGTEEGSEGKTAFVERRRPDF 324
+ +E+ EG+ AF+E+R+P F
Sbjct: 244 ACFDSEDYREGRAAFMEKRKPVF 266
|
Length = 269 |
| >gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 2e-40
Identities = 87/257 (33%), Positives = 119/257 (46%), Gaps = 25/257 (9%)
Query: 80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD----Q 135
G+A +T+NRP NA + L A + D SV V++L G +AFC+G D +
Sbjct: 20 GVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAG-KAFCAGHDLKEMR 78
Query: 136 ALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN 195
A R + F R + + I LP+PVIA V G A G L CDL +AAD
Sbjct: 79 AARGLAYFRAL--FARCS--RVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADT 134
Query: 196 AIFGQTGPKVGSFDAGYGSSIM---SRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
A F G +G F S+ M SR V K+A EM F A A + GLVN VVP
Sbjct: 135 ARFAVPGVNIGLF----CSTPMVALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVVP 190
Query: 253 LEKLEQETIKWSREILRNSPTAIRVLKSALNA-----VDDGHAGLQTLGGDATLIFYGTE 307
+ L+ + + I SP A+R+ K A + D +A GD E
Sbjct: 191 ADALDAAVARLAAVIAAKSPAAVRIGKEAFYRQAEMPLADAYA----YAGDVMAENMMAE 246
Query: 308 EGSEGKTAFVERRRPDF 324
+ EG AF+E+R P++
Sbjct: 247 DAEEGIDAFLEKRPPEW 263
|
Length = 266 |
| >gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 2e-38
Identities = 87/248 (35%), Positives = 125/248 (50%), Gaps = 36/248 (14%)
Query: 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
E+ + YE V IA+IT+NRP+ RNA + EL AF A D +V VI+L G G
Sbjct: 1 MEYEYVRYE--VAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAG 58
Query: 126 TEAFCSGGD----QALRTRDGYAD------YENFGRLNV-----------LDLQVQIRRL 164
+ F +G D R RD D ++ + V L + + R L
Sbjct: 59 -KHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDL 117
Query: 165 PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF----GQTG-PKVGSFDAGYGSSIMSR 219
PKP IA V G + GG +L VCDL +A+D+A F + G P V F +
Sbjct: 118 PKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGIPGVEYFAHPW------- 170
Query: 220 LVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLK 279
+GP+KA+E+ F TA+EA ++G+VN VVP ++LE ET++ +R I P +R+ K
Sbjct: 171 ELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLRLTK 230
Query: 280 SALNAVDD 287
A+N D
Sbjct: 231 RAVNQTLD 238
|
Length = 288 |
| >gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 3e-38
Identities = 83/250 (33%), Positives = 125/250 (50%), Gaps = 9/250 (3%)
Query: 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
+G+A + +NRP+ RNA ++L F + +D + I+LTG G + F +G D ++
Sbjct: 16 DGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTG-GEKVFAAGAD--IK 72
Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
E + R + I + PKPVIA V GYA+GGG L M D+ +A ++A F
Sbjct: 73 EFATAGAIEMYLR-HTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASF 131
Query: 199 GQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQ 258
GQ KVG G+ + R VG KA M A EA +GLV+ VV E+
Sbjct: 132 GQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVEDEQTLP 191
Query: 259 ETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQT---LGGDATLIFYGTEEGSEGKTA 315
++ +REI R P A+ +K + A D A L L A + + +E+ EG A
Sbjct: 192 RALELAREIARMPPLALAQIKEVVLAGAD--APLDAALALERKAFQLLFDSEDQKEGMDA 249
Query: 316 FVERRRPDFL 325
F+E+R+P +
Sbjct: 250 FLEKRKPAYK 259
|
Length = 261 |
| >gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 2e-37
Identities = 83/269 (30%), Positives = 123/269 (45%), Gaps = 24/269 (8%)
Query: 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
T +++ E V GIA+IT NRP RNA + L D S+ ++L G G
Sbjct: 5 TSTDELLLE--VRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAG 62
Query: 126 TEAFCSGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
+AF +G D +A T + YE VL + +L P IA +AG VGGG
Sbjct: 63 DKAFVAGTDIAQFRAFSTAEDAVAYERRID-RVLGA---LEQLRVPTIAAIAGACVGGGA 118
Query: 182 VLHMVCDLTIAADNAIFG----QTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT 237
+ CDL IA +A FG +T +G+ + + + L+G + ++M F AR
Sbjct: 119 AIAAACDLRIATPSARFGFPIART---LGNCLSMSNLARLVALLGAARVKDMLFTARLLE 175
Query: 238 AEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALN--AVDDGHAGLQTL 295
AEEA GLVN VV L+ + + ++P +R K AL +
Sbjct: 176 AEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLRATKEALRRLRREGLPD----- 230
Query: 296 GGDATLIFYGTEEGSEGKTAFVERRRPDF 324
G D + Y +E+ EG AF+E+R P +
Sbjct: 231 GDDLIRMCYMSEDFREGVEAFLEKRPPKW 259
|
Length = 262 |
| >gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 3e-35
Identities = 89/270 (32%), Positives = 132/270 (48%), Gaps = 27/270 (10%)
Query: 71 IIYEKAVGEGIAKITINRPDRRNAF-RPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF 129
++ E+ I +T+NRP+ RNA V L+ A D SV +ILTG GT AF
Sbjct: 5 LLVERD--GHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGT-AF 61
Query: 130 CSGGD-QALRTRDGYADYENFGRLNVLDLQVQ----IRRLPK-------PVIAMVAGYAV 177
SGG+ + +R R G FG + D++ I+R+P PVIA V G A+
Sbjct: 62 SSGGNVKDMRARVG-----AFG-GSPADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAI 115
Query: 178 GGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT 237
G G L +CD+ IA++ A F ++ K+G G+ ++ R++G +A EM F
Sbjct: 116 GAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAID 175
Query: 238 AEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTL-- 295
A A + GLV+ VVP ++L + I N P A+R+ K L + HA L TL
Sbjct: 176 AATALEWGLVSRVVPADQLLPAARALAERIAANPPHALRLTKRLLR--EGQHASLDTLLE 233
Query: 296 -GGDATLIFYGTEEGSEGKTAFVERRRPDF 324
+ + T + E AF+E+R P F
Sbjct: 234 LSAAYQALAHHTADHREAVDAFLEKRPPVF 263
|
Length = 266 |
| >gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 3e-35
Identities = 83/264 (31%), Positives = 122/264 (46%), Gaps = 37/264 (14%)
Query: 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-----Q 135
IA IT N P +RNA + +L++A +D VI+ G++ + +G D
Sbjct: 14 IATITFNNPAKRNALSKVLIDDLMQALSDLNRPEIRVVILRAPSGSKVWSAGHDIHELPS 73
Query: 136 ALRTRDGYAD-YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD 194
R Y D R I++ PKPVIAMV G GG L M CDL IAA
Sbjct: 74 GGRDPLSYDDPLRQILR--------MIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAAS 125
Query: 195 NAIFGQTGPKVGSFDAGYGSS-IMS--RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
+ F T +G Y S I++ G +EM+F A TA+ A +G++N VV
Sbjct: 126 TSTFAMTPANLG---VPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVV 182
Query: 252 PLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH----------AGLQTLGGDATL 301
+E+LE T++ + I +P AI V+K L + + H GL+
Sbjct: 183 EVEELEDFTLQMAHHISEKAPLAIAVIKEQLRVLGEAHPMNPDEFERIQGLRR------- 235
Query: 302 IFYGTEEGSEGKTAFVERRRPDFL 325
Y +E+ EG AF+E+R+P F+
Sbjct: 236 AVYDSEDYQEGMNAFLEKRKPVFV 259
|
Length = 261 |
| >gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 6e-35
Identities = 79/214 (36%), Positives = 110/214 (51%), Gaps = 8/214 (3%)
Query: 80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT 139
GIA ITINRP NA + EL AF +D SV VIILTG G AFCSG D
Sbjct: 19 GIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSG-RAFCSGVDLTAAE 77
Query: 140 RDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG 199
D + D Q+ R KP+I + G+A+ G + + CD+ +A+ A F
Sbjct: 78 EVFKGDVK----DVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFI 133
Query: 200 QTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQE 259
T K G F + S +SR++G +ARE+ A TAE AE+ GLVN VV +L ++
Sbjct: 134 DTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLKK 193
Query: 260 TIKWSREILRNSPTAIRVLKSALN---AVDDGHA 290
+ + I++N+ + KS +N +D GHA
Sbjct: 194 AREVAEAIIKNNQGMVLRYKSVINDGLKLDLGHA 227
|
Length = 265 |
| >gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 2e-34
Identities = 86/253 (33%), Positives = 125/253 (49%), Gaps = 12/253 (4%)
Query: 80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT 139
GIA +T+NRP++ NA + L+ + D SV +ILTG G AF +G D +
Sbjct: 12 GIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFS 71
Query: 140 RDGYADYENFGRLNVLDLQVQIRRL---PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
A + R V Q RL PKPVIA V G A GGG + L IA++ A
Sbjct: 72 ASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERA 131
Query: 197 IFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKL 256
+F + ++G G+ + RL G K+A E+ ++AE A ++GLVN VVP E+L
Sbjct: 132 LFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPHEEL 191
Query: 257 EQETIKWSREILRNSPTAIRVLKSALNAVDDG-----HAGLQTLGGDATLIFYGTEEGSE 311
+R I+R+SP A+ + L AV G GL + + G+ + E
Sbjct: 192 LPAARALARRIIRHSPVAV---AAILTAVTRGLNLSIAEGLL-IESEQFARMAGSADLRE 247
Query: 312 GKTAFVERRRPDF 324
G A++ERRRP +
Sbjct: 248 GLAAWIERRRPAY 260
|
Length = 260 |
| >gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 2e-34
Identities = 77/252 (30%), Positives = 115/252 (45%), Gaps = 20/252 (7%)
Query: 84 ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD----QALRT 139
+T++ P RNA P I A N A D S+ ++LTG G FC+GG+ R
Sbjct: 16 LTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAG-GFFCAGGNLNRLLENRA 74
Query: 140 RDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG 199
+ + L+ D IR PKPVIA V G A G G L + CDL +AA +A F
Sbjct: 75 KPPSVQAASIDGLH--DWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFV 132
Query: 200 QTGPKVG-SFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQ 258
KVG + D G GS ++R + + A E+ + +AE +G+VN + +
Sbjct: 133 MAYVKVGLTPDGG-GSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLAEPGQALA 191
Query: 259 ETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGG------DATLIFYGTEEGSEG 312
E + + ++ SP A+ +KS + A TL D + + EG
Sbjct: 192 EALALADQLAAGSPNALARIKSLIA-----DAPEATLAAQLEAERDHFVASLHHADALEG 246
Query: 313 KTAFVERRRPDF 324
AF+E+R PD+
Sbjct: 247 IAAFLEKRAPDY 258
|
Length = 260 |
| >gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 1e-33
Identities = 73/209 (34%), Positives = 103/209 (49%), Gaps = 4/209 (1%)
Query: 77 VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA 136
V +GIA +T+NRP++RNA P +E+I + D GV++LTG G +A+ +G D
Sbjct: 14 VEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAG-DAWSAGMDLK 72
Query: 137 LRTRDGYADYENFGRLNVLDLQVQIRRL---PKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
R+ A E + RRL KP IAMV G+ GGG + CDL IAA
Sbjct: 73 EYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAA 132
Query: 194 DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPL 253
D A FG + G G S M+ VG + A +T +A +MGLVN VPL
Sbjct: 133 DEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESVPL 192
Query: 254 EKLEQETIKWSREILRNSPTAIRVLKSAL 282
+L T + + ++L +P +R K
Sbjct: 193 AQLRARTRELAAKLLEKNPVVLRAAKDGF 221
|
Length = 275 |
| >gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 2e-33
Identities = 88/250 (35%), Positives = 132/250 (52%), Gaps = 13/250 (5%)
Query: 80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD----Q 135
G+A +T+NRP++ NA + EL A D++V V++LTG G ++FC+GGD +
Sbjct: 14 GVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAG-KSFCAGGDLGWMR 72
Query: 136 ALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN 195
A T D E RL ++ L+ + LPKP+I + G A GGG L VCD+ IA
Sbjct: 73 AQMTADRATRIEEARRLAMM-LKA-LNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSG 130
Query: 196 AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEK 255
A FG T ++G A +++R +G AR ++ AR + AEEA ++GL++ VVP E+
Sbjct: 131 ARFGLTETRLGLIPATISPYVVAR-MGEANARRVFMSARLFDAEEAVRLGLLSRVVPAER 189
Query: 256 LEQETIKWSREILRNSPTAI---RVLKSALNAVDDGHAGLQTLGGDATLIFYGTEEGSEG 312
L+ L +P A+ + L AL A D T+ +A + TEE EG
Sbjct: 190 LDAAVEAEVTPYLSCAPGAVAAAKALVRALGAPIDEAVIDATI--EALADTWETEEAREG 247
Query: 313 KTAFVERRRP 322
AF ++R P
Sbjct: 248 IAAFFDKRAP 257
|
Length = 262 |
| >gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 2e-33
Identities = 82/250 (32%), Positives = 123/250 (49%), Gaps = 12/250 (4%)
Query: 80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QALR 138
I +IT++RP + NA T + F + RDD + V I+TG G + F +G D +A
Sbjct: 12 SILEITLDRP-KANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAA 70
Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
+G A +FG L +I L KPVIA V GYA GGG L + D + ADNA F
Sbjct: 71 --EGEAPDADFGPGGFAGLT-EIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASF 127
Query: 199 GQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLE 257
K+G D+G G + + + P A EM R AEEA + G+VN VVP +L
Sbjct: 128 ALPEAKLGIVPDSG-GVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQAELM 186
Query: 258 QETIKWSREILRNSPTAIRVLKSALNA-----VDDGHAGLQTLGGDATLIFYGTEEGSEG 312
+ +++++ ++P AI LK V++ + +++ +E+ EG
Sbjct: 187 DRARELAQQLVNSAPLAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEG 246
Query: 313 KTAFVERRRP 322
AF E+R P
Sbjct: 247 PRAFAEKRDP 256
|
Length = 261 |
| >gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 3e-33
Identities = 90/292 (30%), Positives = 136/292 (46%), Gaps = 52/292 (17%)
Query: 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
+ I Y+ V +GIA IT+NRPD+ NAF +ELI AF+ A D +V +I+TG G
Sbjct: 2 TYETIRYD--VADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAG- 58
Query: 127 EAFCSGGD---------------QALRTRDGYADY------ENFGRLNVLDLQVQIRRLP 165
AFC+G D + AD + GR+ ++I
Sbjct: 59 RAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVT-----LRIFDSL 113
Query: 166 KPVIAMVAGYAVGGGHVLHMVCDLTIAADNA----IFGQTG--PKVGSFDAGYGSSIMSR 219
KPVIA V G AVG G + + D+ +A+ A +FG+ G P+ S S + R
Sbjct: 114 KPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAAS------SWFLPR 167
Query: 220 LVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRN-SPTAI--- 275
LVG + A E + R + A+EA GLV +V P ++L +REI N SP ++
Sbjct: 168 LVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVSVALT 227
Query: 276 -RVLKSALNAVDDGHAGLQTLGGDATLIFYG--TEEGSEGKTAFVERRRPDF 324
+++ A A D+ I+ + +G EG ++F+E+R F
Sbjct: 228 RQMMWRMAGADHPMEAHRV----DSRAIYSRGRSGDGKEGVSSFLEKRPAVF 275
|
Length = 296 |
| >gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 6e-33
Identities = 75/256 (29%), Positives = 117/256 (45%), Gaps = 15/256 (5%)
Query: 76 AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQ 135
V + +A IT+N P NA + EL + D +V V+++ G+G F +G D
Sbjct: 7 RVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEG-RFFSAGAD- 63
Query: 136 ALRTRDGYADYENFGRLNVLDLQV--QIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
++ + E L L ++ + KPVIA + G A+GGG L M C + A
Sbjct: 64 -IKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFAT 122
Query: 194 DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPL 253
++A G +G G+ + R VG KA EM + T EA K GLVN V P
Sbjct: 123 ESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPE 182
Query: 254 EKLEQETIKWSREILRNSPTAIRVLKSALNA--VDDGHAGLQ---TLGGDATLIFYGTEE 308
E L + K +++I SP R + L + G++ + G+ + +E+
Sbjct: 183 ETLLDDAKKLAKKIAGKSPATTRAVLELLQTTKSSSYYEGVKREAKIFGEV----FTSED 238
Query: 309 GSEGKTAFVERRRPDF 324
EG AF+E+R+P F
Sbjct: 239 AKEGVQAFLEKRKPSF 254
|
Length = 257 |
| >gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-32
Identities = 67/210 (31%), Positives = 98/210 (46%), Gaps = 4/210 (1%)
Query: 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
+ + +T+NRP+ RNA + L A +A D V V++LTG AFC+G D
Sbjct: 12 DRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGAD-PAFCAGLDLKEL 70
Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
DG A N + KPVI + G AV GG L + CD+ IA++ A F
Sbjct: 71 GGDGSAYGAQDALPNPS---PAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARF 127
Query: 199 GQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQ 258
T +VG S + + VG +AR M F A +A + GLV VVP ++L
Sbjct: 128 ADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELLP 187
Query: 259 ETIKWSREILRNSPTAIRVLKSALNAVDDG 288
+ + I N+P A+R LK++ +
Sbjct: 188 RARRLAASIAGNNPAAVRALKASYDDGAAA 217
|
Length = 258 |
| >gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 7e-32
Identities = 88/264 (33%), Positives = 131/264 (49%), Gaps = 28/264 (10%)
Query: 76 AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQ 135
A+ G+A +T+NRPD+ N+F +EL A + DD ++LTG G FC+G D
Sbjct: 9 AIEAGVATLTLNRPDKLNSFTREMHRELREALDQVEDDG-ARALLLTGAG-RGFCAGQDL 66
Query: 136 ALRTRDGYADYENFGRLNVLD-----LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
A R + G ++ L ++R LP PVIA V G A G G L + CD+
Sbjct: 67 ADRDVTPGGAMPDLG--ESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIV 124
Query: 191 IAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNT 249
+AA +A F Q K+G D+G G+ + RLVG +A + L +AE+AE+ GL+
Sbjct: 125 LAARSASFIQAFVKIGLVPDSG-GTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLIWR 183
Query: 250 VVPLEKLEQETIKWSREILRNSPT-AIRVLKSALNA-----VD---DGHAGLQTLGGDAT 300
VV L E + + L PT + ++K A+NA +D D LQ G
Sbjct: 184 VVDDAALADEAQQLAAH-LATQPTRGLALIKQAMNASATNTLDAQLDLERDLQREAGR-- 240
Query: 301 LIFYGTEEGSEGKTAFVERRRPDF 324
+ + +EG +AF+E+R P F
Sbjct: 241 -----SADYAEGVSAFLEKRAPRF 259
|
Length = 262 |
| >gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 1e-31
Identities = 84/255 (32%), Positives = 131/255 (51%), Gaps = 15/255 (5%)
Query: 76 AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQ 135
+ + + +T+NRP+ RNA + +L+ A D+S+GV ++TG F +G D
Sbjct: 7 SRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNA-RFFAAGAD- 64
Query: 136 ALRTRDGYADYENFGRLNVLDLQVQ----IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTI 191
L A+ + LN D + Q ++ KP+IA V GYA+G G L ++CD+ I
Sbjct: 65 -LNE---MAEKDLAATLN--DPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVI 118
Query: 192 AADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
A +NA FG +G G+ + R VG A +M TA++A++ GLV+ V
Sbjct: 119 AGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVF 178
Query: 252 PLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG--HAGLQTLGGDATLIFYGTEEG 309
P E + ++ + +I R+SP A+R K AL + AGL TL+ TE+
Sbjct: 179 PPELTLERALQLASKIARHSPLALRAAKQALRQSQEVDLQAGLAQERQLFTLL-AATEDR 237
Query: 310 SEGKTAFVERRRPDF 324
EG +AF+E+R PDF
Sbjct: 238 HEGISAFLEKRTPDF 252
|
Length = 255 |
| >gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 8e-31
Identities = 81/260 (31%), Positives = 120/260 (46%), Gaps = 18/260 (6%)
Query: 76 AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD- 134
V +G+A IT+NRP+R+N + EL F + V ++LTG G FCSGGD
Sbjct: 22 EVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAG-GNFCSGGDV 80
Query: 135 -------QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
+ + A F R+ DL +R P+P+IA V G G G +L M
Sbjct: 81 HEIIGPLTKMDMPELLA----FTRMTG-DLVKAMRACPQPIIAAVDGVCAGAGAILAMAS 135
Query: 188 DLTIAADNAIFGQTGPKVGSFDAGYGS-SIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
DL + +A +VG A G+ +++ R++G +A E+ + R +AEE E+ G
Sbjct: 136 DLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGF 195
Query: 247 VNTVVPLEKLEQETIKWSREILRNSPT-AIRVLKSALNA-VDDGHAGLQTLGGDATLIFY 304
N +V E+L E +R L PT A + K+ L+ D G A I
Sbjct: 196 FNRLVEPEELLAEAQALARR-LAAGPTFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICM 254
Query: 305 GTEEGSEGKTAFVERRRPDF 324
TE+ AFV +R+P F
Sbjct: 255 QTEDFRRAYEAFVAKRKPVF 274
|
Length = 277 |
| >gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-30
Identities = 78/247 (31%), Positives = 119/247 (48%), Gaps = 6/247 (2%)
Query: 80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT 139
G A + ++R D+ NAF ++ELI A + + D+S+ ++L G+G F +G D A
Sbjct: 15 GFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRH-FSAGADLAWMQ 73
Query: 140 RDGYADYE-NFGRLNVL-DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAI 197
+ DY N L +L + RL P +A+V G A GG L CD+ I AD+A
Sbjct: 74 QSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQ 133
Query: 198 FGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLE 257
F + ++G A S + + +G + AR A + A ++GL+ P +LE
Sbjct: 134 FCLSEVRIGLAPAVI-SPFVVKAIGERAARRYALTAERFDGRRARELGLLAESYPAAELE 192
Query: 258 QETIKWSREILRNSPTAIRVLKSALNAVDDGH--AGLQTLGGDATLIFYGTEEGSEGKTA 315
+ W +L NSP A+R K L V DG L+ +A + EG EG A
Sbjct: 193 AQVEAWIANLLLNSPQALRASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRA 252
Query: 316 FVERRRP 322
F+E+R P
Sbjct: 253 FLEKRTP 259
|
Length = 265 |
| >gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 8e-30
Identities = 88/259 (33%), Positives = 124/259 (47%), Gaps = 21/259 (8%)
Query: 76 AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQ 135
V + +A +T++ P NA ELI F++ + V V++LTG G + FC+G D
Sbjct: 9 EVSDHVAVVTLDNPPV-NALSRELRDELIAVFDEISERPDVRVVVLTGAG-KVFCAGAD- 65
Query: 136 ALRTR----DGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTI 191
L+ R G D R + IR KPVIA V G A+G G L CD+ +
Sbjct: 66 -LKGRPDVIKGPGDLRAHNRR-TRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIV 123
Query: 192 AADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
A++NA+FG VG AG G M RL G R M A E + G++ +
Sbjct: 124 ASENAVFGLPEIDVGL--AGGGKHAM-RLFGHSLTRRMMLTGYRVPAAELYRRGVIEACL 180
Query: 252 PLEKLEQETIKWSREILRNSPTAIRVLKSALNAVD-----DGHAGLQTLGGDATLIFYGT 306
P E+L E ++ +REI SP A R+ K ALN ++ DG+ Q D T T
Sbjct: 181 PPEELMPEAMEIAREIASKSPLATRLAKDALNTIENMSLRDGYRYEQ----DITAKLAKT 236
Query: 307 EEGSEGKTAFVERRRPDFL 325
E+ E + AF+E+R P F
Sbjct: 237 EDAKEAQRAFLEKRPPVFK 255
|
Length = 257 |
| >gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-29
Identities = 81/254 (31%), Positives = 130/254 (51%), Gaps = 22/254 (8%)
Query: 80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT 139
GI ++ ++RP+ +NA ++ L AF + D+S V++L FC+G D R
Sbjct: 4 GIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERR 63
Query: 140 RDGYADYENFG---RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196
+ ++ + F R L+ L P IA+V G A+GGG L + CDL I + A
Sbjct: 64 KMSPSEVQKFVNSLRSTFSSLEA----LSIPTIAVVEGAALGGGLELALSCDLRICGEEA 119
Query: 197 IFG--QTG----PKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250
+FG +TG P G G+ + RLVG +A+E+ F R A EA MGLVN
Sbjct: 120 VFGLPETGLAIIPGAG------GTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYC 173
Query: 251 VPLEKLEQETIKWSREILRNSPTAIRVLKSALN--AVDDGHAGLQTLGGDATLIFYGTEE 308
VP + ++ ++ ++EI + P AI++ K A+N + D +GL+ + + T++
Sbjct: 174 VPAGEAYEKALELAQEINQKGPLAIKMAKKAINEGSEVDMASGLE-IEEECYEQVLKTKD 232
Query: 309 GSEGKTAFVERRRP 322
EG AF E+R+P
Sbjct: 233 RLEGLAAFAEKRKP 246
|
Length = 251 |
| >gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 2e-29
Identities = 85/281 (30%), Positives = 122/281 (43%), Gaps = 31/281 (11%)
Query: 64 SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
T + E A + +A++T+NRP + NA P EL F D V ++L+G
Sbjct: 1 MMTTYESFTVELA--DHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSG 58
Query: 124 KGTEAFCSGGD--------QALRTRDGYADYENFGRLNVLDLQVQIR---RLPKPVIAMV 172
G + F G D L + R +L LQ I KPVIA V
Sbjct: 59 SG-KHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRRE-ILRLQAAINAVADCRKPVIAAV 116
Query: 173 AGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGS-SIMSRLVGPKKAREMWF 231
G+ +GGG L CD+ A+ +A F +G A GS + R++G RE+
Sbjct: 117 QGWCIGGGVDLISACDMRYASADAKFSVREVDLG-MVADVGSLQRLPRIIGDGHLRELAL 175
Query: 232 LARFYTAEEAEKMGLVNTVVP-LEKLEQETIKWSREILRNSPTAIRVLKSALN-----AV 285
R A EAEK+GLVN V + L +REI SP A+R K L+ V
Sbjct: 176 TGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVRGTKEVLDYMRDHRV 235
Query: 286 DDGHAGLQTLGG--DATLIFYGTEEGSEGKTAFVERRRPDF 324
D GL+ + A L +++ +E A +E+R P+F
Sbjct: 236 AD---GLRYVATWNAAMLP---SKDLTEAIAAHMEKRPPEF 270
|
Length = 272 |
| >gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 5e-28
Identities = 74/258 (28%), Positives = 120/258 (46%), Gaps = 22/258 (8%)
Query: 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQAL 137
G+ +I +N P NA +EL + D D V V+++ G+G +AF +GGD AL
Sbjct: 19 PPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEG-KAFSAGGDLAL 77
Query: 138 RTRDGYADYENFGRLNVL----DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
+ D+E R V DL + KP+++ + G AVG G V ++ D++IAA
Sbjct: 78 -VEEMADDFE--VRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAA 134
Query: 194 DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPL 253
+A ++G + + + L G KA+ L + EEAE++GLV+ V
Sbjct: 135 KDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAVDD 194
Query: 254 EKLEQETIKWSREILRNSPTAIRVLKSALN-------AVDDGHAGLQTLGGDATLIFYGT 306
++L + ++ + + S TAIR K ALN D L+ +G +
Sbjct: 195 DELLPKALEVAERLAAGSQTAIRWTKYALNNWLRMAGPTFDTSLALEFMG-------FSG 247
Query: 307 EEGSEGKTAFVERRRPDF 324
+ EG + E+R PDF
Sbjct: 248 PDVREGLASLREKRAPDF 265
|
Length = 268 |
| >gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 3e-27
Identities = 81/248 (32%), Positives = 116/248 (46%), Gaps = 17/248 (6%)
Query: 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
+ I + RP+RRNA +EL A A D S I+LTG+GT FC+G D +
Sbjct: 8 GQVLTIELQRPERRNALNAELCEELREAVRKA-VDESARAIVLTGQGT-VFCAGADLS-- 63
Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
D YAD +F ++++ I P PVIA + G A+G G L M CDL + A A F
Sbjct: 64 -GDVYAD--DFPD-ALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYF 119
Query: 199 GQTGPKVG-SFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLE 257
K G + D + +S LVG +AR M A TAE+A G+ N + L +
Sbjct: 120 QFPVAKYGIALD-NWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGTLADAQ 178
Query: 258 QETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLI-FYGTEEGSEGKTAF 316
W+ EI +P A++ K LN DDG + +++ E + A
Sbjct: 179 A----WAAEIAGLAPLALQHAKRVLN--DDGAIEEAWPAHKELFDKAWASQDAIEAQVAR 232
Query: 317 VERRRPDF 324
+E+R P F
Sbjct: 233 IEKRPPKF 240
|
Length = 243 |
| >gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 5e-27
Identities = 85/261 (32%), Positives = 122/261 (46%), Gaps = 23/261 (8%)
Query: 80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR- 138
IA IT+NRP+R N+ + L A + D+SV V++LTG G F SG D
Sbjct: 19 EIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAG-RGFSSGADHKSAG 77
Query: 139 --------TRDGYADYENFGRLNVLD-LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL 189
TR YA + +LD + + +RRL +PVIA V G A+GGG L + D+
Sbjct: 78 VVPHVEGLTRPTYA----LRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADI 133
Query: 190 TIAADNAIFGQTGPKVGSFDAGYG-SSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVN 248
+A+ +A F G G + G S ++ R +G +A E+ R AEEAE++GLV+
Sbjct: 134 RVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVS 193
Query: 249 TVVPLEKLEQETIKWSREILRNSPTAI----RVLKSALNAVD-DGHAGLQTLGGDATLIF 303
VP E+L + + S I R L S L+A + H + LG +
Sbjct: 194 RQVPDEQLLDTCYAIAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAEGLG--QLFVR 251
Query: 304 YGTEEGSEGKTAFVERRRPDF 324
T E A E+R P F
Sbjct: 252 LLTANFEEAVAARAEKRPPVF 272
|
Length = 276 |
| >gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 6e-27
Identities = 70/256 (27%), Positives = 107/256 (41%), Gaps = 24/256 (9%)
Query: 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSG-------- 132
+ I ++RP +RNAF + +L A + D + V +L G E F +G
Sbjct: 9 VLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHG-EHFTAGLDLADVAP 67
Query: 133 --GDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
+G D RRL KP++ V GY + G L + D+
Sbjct: 68 KLAAGGFPFPEGGID----------PWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIV 117
Query: 191 IAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250
+AADN F Q + G G + + G A + A+EA ++GLV V
Sbjct: 118 VAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEV 177
Query: 251 VPLEKLEQETIKWSREILRNSPTAIR-VLKSALNAVDDGH-AGLQTLGGDATLIFYGTEE 308
VP + + I+ + I R +P ++ L SA AV +G A L + +F +E+
Sbjct: 178 VPPGEQLERAIELAERIARAAPLGVQATLASARAAVREGEAAAAAQLPPELRPLF-TSED 236
Query: 309 GSEGKTAFVERRRPDF 324
EG AF+ERR F
Sbjct: 237 AKEGVQAFLERRPARF 252
|
Length = 255 |
| >gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 7e-27
Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 11/219 (5%)
Query: 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEA 128
++ + V EGIA++T+ +NAF +L AF+ D V+ILTG
Sbjct: 3 MKVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPN-Y 61
Query: 129 FCSGGDQA--LRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
F +GG Q L + G G +L P PVIA + G+A+GGG VL +
Sbjct: 62 FATGGTQEGLLSLQTGK------GTFTEANLYSLALNCPIPVIAAMQGHAIGGGLVLGLY 115
Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGS-SIMSRLVGPKKAREMWFLARFYTAEEAEKMG 245
D+ + + +++ K G F G G+ +I+ +G +EM AR+Y E +K G
Sbjct: 116 ADIVVLSRESVYTANFMKYG-FTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRG 174
Query: 246 LVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNA 284
+ V+P ++ ++ ++ +R + ++ +LK L A
Sbjct: 175 VPFPVLPRAEVLEKALELARSLAEKPRHSLVLLKDHLVA 213
|
Length = 249 |
| >gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 7e-27
Identities = 67/215 (31%), Positives = 106/215 (49%), Gaps = 16/215 (7%)
Query: 62 DESGTEFTDIIYEK--------AVGEGI--AKITINRPDRRNAFRPHTVKELIRAFNDAR 111
+ T ++YEK V G+ A I ++ P + N++ VK +I AF A
Sbjct: 9 EHPETVCPGVLYEKRPAKRPDGNVVPGLYNAWIILDNPKQYNSYTTDMVKAIILAFRRAS 68
Query: 112 DDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA----DYENFGRLNVLDLQVQIRRLPKP 167
D V ++ T G +AFC+GG+ + YA +Y + RL D+ I KP
Sbjct: 69 SDRDVVAVVFTAVGDKAFCTGGNTK-EYAEYYAGNPQEYRQYMRL-FNDMVSAILGCDKP 126
Query: 168 VIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227
VI V G +GGG + M D TIA D A FGQ GPK GS G + + ++G ++A
Sbjct: 127 VICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAM 186
Query: 228 EMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIK 262
L ++A +A+++G++ VVP K++ + +
Sbjct: 187 VSGTLCEPWSAHKAKRLGIIMDVVPALKVDGKFVA 221
|
Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 360 |
| >gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-26
Identities = 65/228 (28%), Positives = 99/228 (43%), Gaps = 27/228 (11%)
Query: 72 IYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCS 131
I GIA++T++ P NA L A A D V++L +G F +
Sbjct: 3 ITSTTPEPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEG-RGFNA 60
Query: 132 GGD-QALRTRDGYA--------DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
G D + L+ G+ + F + PVIA V G+ +GGG
Sbjct: 61 GVDIKELQATPGFTALIDANRGCFAAFR---------AVYECAVPVIAAVHGFCLGGGIG 111
Query: 183 LHMVCDLTIAADNAIFGQTGPKV--GSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEE 240
L D+ +A+D+A FG P+V G+ A + + RLV R ++F A TA E
Sbjct: 112 LVGNADVIVASDDATFGL--PEVDRGALGAA---THLQRLVPQHLMRALFFTAATITAAE 166
Query: 241 AEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG 288
G V VVP ++L++ ++ +R+I IR K ALN +D
Sbjct: 167 LHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIRAAKEALNGIDPQ 214
|
Length = 249 |
| >gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-26
Identities = 79/286 (27%), Positives = 120/286 (41%), Gaps = 34/286 (11%)
Query: 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
+ YE V IA+IT+NRP++ NA T EL A A D V VI+++G G
Sbjct: 7 DNLKTMTYE--VTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAG 64
Query: 126 TEAFCSGGD------QALRTRDGYADYENFGRLN---------VLDLQVQIR-------- 162
+ FC+G D + G A +N ++D Q+ R
Sbjct: 65 -KGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSL 123
Query: 163 -RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV-GSFDAGYGSSIMSRL 220
KP +A V GY V GG + + CD IAAD+A G +V G G + +
Sbjct: 124 WHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATG----MWAYR 179
Query: 221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKS 280
+GP++A+ + F T +A + GL VP E+L++ T + I + ++K
Sbjct: 180 LGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLAMVKL 239
Query: 281 ALNAVDDGHAGLQTLGGDATLIFYGTEEGSEGKTAFVERRRPDFLK 326
A+N+ G+ T AT +F G + AF K
Sbjct: 240 AVNSALL-QQGVATSQMLAT-VFDGIARHTPEGHAFKADAAEHGFK 283
|
Length = 302 |
| >gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 8e-26
Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 12/224 (5%)
Query: 67 EFTDIIYEKAVGE-GIAKITINRPDRRNAFRPHTVKELIRAFND--ARDDSSVGVIILTG 123
EF +++ + G+A + ++RP NA +E++ A N+ RDD V +IL G
Sbjct: 3 EFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDD--VAAVILYG 59
Query: 124 KGTEAFCSGGD-QALRTRDG-YADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
G E F +G D LRT AD R +D + +PKP +A + GYA+G G
Sbjct: 60 -GHEIFSAGDDMPELRTLSAQEADTAARVRQQAVD---AVAAIPKPTVAAITGYALGAGL 115
Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEA 241
L + D ++ DN FG T G +G G + ++R GP +A+E+ F RF+ AEEA
Sbjct: 116 TLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEA 175
Query: 242 EKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAV 285
+GL++ +V + + W+R L P A+ K+ ++ V
Sbjct: 176 LALGLIDEMVAPDDVYDAAAAWARRFLDGPPHALAAAKAGISDV 219
|
Length = 222 |
| >gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-25
Identities = 75/255 (29%), Positives = 116/255 (45%), Gaps = 14/255 (5%)
Query: 80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDD-SSVGVIILTGKGTEAFCSGGDQALR 138
G+A +T++ P+ NA + L A + D + V ++LTG G FC+G + R
Sbjct: 13 GVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG-RGFCTGANLQGR 71
Query: 139 TRDGYADYENFGRLNVLD-----LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
G L+ ++R LP P++ V G A G G ++ DL + A
Sbjct: 72 GSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCA 131
Query: 194 DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPL 253
+A F Q ++G G + ++ RLVG +A E+ L AE A + GLVN VV
Sbjct: 132 RSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVDD 191
Query: 254 EKLEQETIKWSREILRNSPT----AIRVLKSALNAVDDGHAGLQTLGGDATLIFYGTEEG 309
+L E +K + E L N PT IR K ++ ++ L +A I TE+
Sbjct: 192 AELMAEAMKLAHE-LANGPTVALGLIR--KLYWDSPENDFEEQLNLEREAQRIAGKTEDF 248
Query: 310 SEGKTAFVERRRPDF 324
EG AF+++R F
Sbjct: 249 KEGVGAFLQKRPAQF 263
|
Length = 266 |
| >gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 2e-25
Identities = 63/213 (29%), Positives = 93/213 (43%), Gaps = 6/213 (2%)
Query: 73 YEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSG 132
V +G+A IT+N PDRRNA +L A A D V +++TG G AFC+G
Sbjct: 5 VLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGK-AFCAG 63
Query: 133 GD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTI 191
D AL G + R + D + + P P IA V G AVG G L + D+ I
Sbjct: 64 ADLTALGAAPGRPAEDGLRR--IYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRI 121
Query: 192 AADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251
A A+F K+G G + ++ R VGP+ AR + AE A + GL V
Sbjct: 122 AGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA 181
Query: 252 PLEKLEQETIKWSREILRNSPTAIRVLKSALNA 284
+ ++ + + K+++ A
Sbjct: 182 --DDPVAAALELAAGPAAAPRELVLATKASMRA 212
|
Length = 249 |
| >gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 4e-25
Identities = 85/256 (33%), Positives = 114/256 (44%), Gaps = 29/256 (11%)
Query: 79 EGIAKITINRPDRRNAFRPHTVKELIRAFN--DARDDSSVGVIILTGKGTEAFCSGGDQA 136
+ ITINRP+ RNA + L A + DA D SVG ILTG G FC+G D
Sbjct: 11 GRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVG--ILTGAGG-TFCAGMD-- 65
Query: 137 LRTRDGYADYEN-------FGRLNVLDLQVQIRRLP-KPVIAMVAGYAVGGGHVLHMVCD 188
L+ +A E FG L R P KP+IA V GYA+ GG L + CD
Sbjct: 66 LK---AFARGERPSIPGRGFGGLT--------ERPPRKPLIAAVEGYALAGGFELALACD 114
Query: 189 LTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVN 248
L +AA +A FG K G AG G + R + A E+ TAE A ++GLVN
Sbjct: 115 LIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVN 174
Query: 249 TVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIF--YGT 306
+ + ++ + I N P A+ K + D + LI + +
Sbjct: 175 RLTEPGQALDAALELAERIAANGPLAVAASKRIVVESGDWSED-EMFARQRELIAPVFTS 233
Query: 307 EEGSEGKTAFVERRRP 322
+ EG TAF E+R P
Sbjct: 234 ADAKEGATAFAEKRAP 249
|
Length = 254 |
| >gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-25
Identities = 71/246 (28%), Positives = 122/246 (49%), Gaps = 8/246 (3%)
Query: 84 ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143
+T+NRP+ RNA ++ ++ A++ +D + ILTG G AFC+G D T+
Sbjct: 18 VTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGG-AFCAGMDLKAATKKPP 76
Query: 144 ADYENFGRLNVLDLQVQI--RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQT 201
D G + + + RRL KP+IA V G A+ GG + D+ +A ++A FG +
Sbjct: 77 GDSFKDGSYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGIS 136
Query: 202 GPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQET 260
K F G GS++ + R + A ++ R TA EA+++GL+ VVP + +
Sbjct: 137 EAKWSLFPMG-GSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKA 195
Query: 261 IKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATL--IFYGTEEGSEGKTAFVE 318
++ + I N P A++ + + + H + D + + +E+ EG AF E
Sbjct: 196 LELAELINANGPLAVQAILRTIRETEGMHE-NEAFKIDTKIGIPVFLSEDAKEGPRAFAE 254
Query: 319 RRRPDF 324
+R P+F
Sbjct: 255 KRAPNF 260
|
Length = 263 |
| >gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 2e-24
Identities = 79/259 (30%), Positives = 114/259 (44%), Gaps = 19/259 (7%)
Query: 76 AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQ 135
A+ G+A++T+NRPD+ N+F EL A D ++LTG G FC+G D
Sbjct: 4 ALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAG-RGFCAGQDL 61
Query: 136 ALR--TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
+ R T G D L ++R LP PV+ V G A G G L + CD+ +AA
Sbjct: 62 SERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAA 121
Query: 194 DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPL 253
++A F Q K+G G+ + RLVG +A + L A A GL+ VV
Sbjct: 122 ESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVDD 181
Query: 254 EKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIF---YGTEEG- 309
L E + + + + K A+ A A +L D L E G
Sbjct: 182 AALMDEAQALAVHLAAQPTRGLALTKRAIQA-----AATNSL--DTQLDLERDLQRELGR 234
Query: 310 ----SEGKTAFVERRRPDF 324
+EG TAF+++R P F
Sbjct: 235 SADYAEGVTAFLDKRNPQF 253
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256 |
| >gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 4e-24
Identities = 80/263 (30%), Positives = 123/263 (46%), Gaps = 17/263 (6%)
Query: 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
F IIYE V + +A +T+NRP+ N F +E++ A A +D SV +++ G +
Sbjct: 1 FEHIIYE--VEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANG-K 57
Query: 128 AFCSGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
F GGD + D L V ++ I++LPKPVI V G G +
Sbjct: 58 VFSVGGDLVEMKRAVDEDDVQSLVKIAEL-VNEISFAIKQLPKPVIMCVDGAVAGAAANM 116
Query: 184 HMVCDLTIAADNAIFGQTGPKVG-SFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
+ D IA+ F Q VG + DAG G +++R +G +A + TAE+A
Sbjct: 117 AVAADFCIASTKTKFIQAFVGVGLAPDAG-GLFLLTRAIGLNRATHLAMTGEALTAEKAL 175
Query: 243 KMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKS----ALNAVDDGHAGLQTLGGD 298
+ G V V EKLE+ + +++ R S + +KS + + +A L+ L
Sbjct: 176 EYGFVYRVAESEKLEKTCEQLLKKLRRGSSNSYAAIKSLVWESFFKGWEDYAKLE-LALQ 234
Query: 299 ATLIFYGTEEGSEGKTAFVERRR 321
+L F E+ EG AF ERRR
Sbjct: 235 ESLAF--KEDFKEGVRAFSERRR 255
|
Length = 255 |
| >gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 3e-23
Identities = 76/216 (35%), Positives = 108/216 (50%), Gaps = 17/216 (7%)
Query: 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA-L 137
+GIA + +NRPD+ NA +ELI + D + +IL+G+G AFC+G D +
Sbjct: 11 DGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGG-AFCAGLDVKSV 69
Query: 138 RTRDGYADYENFGRL----NVLDLQVQI--RRLPKPVIAMVAGYAVGGGHVLHMVCDLTI 191
+ G A F RL N L +V + RRLP PVIA + G GGG + + D+ I
Sbjct: 70 ASSPGNAVKLLFKRLPGNAN-LAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRI 128
Query: 192 AADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250
AA + K G D G+ + LV ARE+ + AR ++AEEA ++GLV V
Sbjct: 129 AAPDTKLSIMEAKWGLVPDMA-GTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHV 187
Query: 251 V--PLEKLEQETIKWSREILRNSPTAIRVLKSALNA 284
PL + +REI + SP AI K +N
Sbjct: 188 SDDPLAA----ALALAREIAQRSPDAIAAAKRLINR 219
|
Length = 262 |
| >gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 6e-23
Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 22/197 (11%)
Query: 80 GIAKITINRPDRRNAFRPHTVKELIRAFN--DARDDSSVGVIILTGKGTEAFCSGGD-QA 136
+ + +NRP+ RNA T L AF DA D +SV V L G G FC+G D +A
Sbjct: 12 PVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAV--LWGAG-GTFCAGADLKA 68
Query: 137 LRTRDGYADYENFGRLNVLDLQ------VQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
+ T GR N L RL KPVIA V+GYAV GG L + CDL
Sbjct: 69 VGT----------GRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLR 118
Query: 191 IAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250
+A ++A+FG + G G+ + RL+G +A ++ R A+EA +GL N V
Sbjct: 119 VAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRV 178
Query: 251 VPLEKLEQETIKWSREI 267
VP + + + E+
Sbjct: 179 VPKGQARAAAEELAAEL 195
|
Length = 254 |
| >gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 1e-21
Identities = 69/256 (26%), Positives = 114/256 (44%), Gaps = 19/256 (7%)
Query: 76 AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD- 134
AV G+A +T++ P RNA V +L A D +V ++LT G FC+G D
Sbjct: 11 AVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGG-TFCAGADL 69
Query: 135 -QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA 193
+A D + L I LPKPVIA + G+ GG L CD+ +A
Sbjct: 70 SEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAG 129
Query: 194 DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK---KAREMWFL--ARFYTAEEAEKMGLVN 248
+ F T ++ G +I+S + P+ +A ++L +F A EA ++GLV
Sbjct: 130 PESTFALTEARI-----GVAPAIISLTLLPRLSPRAAARYYLTGEKF-GAAEAARIGLVT 183
Query: 249 TVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNA--VDDGHAGLQTLGGDATLIFYGT 306
+ ++ ++ R SP + K+ A + + L ++ +F +
Sbjct: 184 --AAADDVDAAVAALLADLRRGSPQGLAESKALTTAAVLAGFDRDAEELTEESARLF-VS 240
Query: 307 EEGSEGKTAFVERRRP 322
+E EG TAF+++R P
Sbjct: 241 DEAREGMTAFLQKRPP 256
|
Length = 260 |
| >gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 92.7 bits (230), Expect = 1e-21
Identities = 85/297 (28%), Positives = 131/297 (44%), Gaps = 39/297 (13%)
Query: 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
+F ++Y A +A IT+NRP++ N P E+ A A D + VI+L G G
Sbjct: 2 PDFQTLLYTTA--GPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAG 59
Query: 126 TEAFCSGGD---------QALRTRDGYADYENFGRLNVLDLQ-----VQIRRLPKPVIAM 171
AF G D +A+ T + ++F + + + I R KPVIA
Sbjct: 60 -RAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQ 118
Query: 172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWF 231
V G+ VGG + D+ IA+D+A+ G ++ Y + + + K +
Sbjct: 119 VHGWCVGGASDYALCADIVIASDDAVIGTPYSRMW---GAYLTGMWLYRLSLAKVKWHSL 175
Query: 232 LARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD--GH 289
R T +A + L+N VP E+LE + + E+ R + ++ K +N + G
Sbjct: 176 TGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQAQKLIVNQAYENMGL 235
Query: 290 AGLQTLGG----------DATLIFYGTEEGSEGKTAFVERR-RP--DFLKFP--RRP 331
A QTLGG DA L F T E ++G A VERR P D+ + P RP
Sbjct: 236 ASTQTLGGILDGLMRNTPDA-LEFIRTAE-TQGVRAAVERRDGPFGDYSQAPPELRP 290
|
Length = 298 |
| >gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 3e-21
Identities = 75/246 (30%), Positives = 109/246 (44%), Gaps = 9/246 (3%)
Query: 80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT 139
G+A +TI N + L +A D V V++L G G +AF G D
Sbjct: 16 GVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMA 75
Query: 140 RDGYADYENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
A E F RL DL +R P PVIA + G+ +GGG L CDL IAA +A F
Sbjct: 76 TLDQASAEAFISRLR--DLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQF 133
Query: 199 GQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQ 258
G +VG + ++++ RL+G + R + A +A GLV+ VVPL +L+
Sbjct: 134 GMPEVRVG-IPSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVPLAELDA 192
Query: 259 ETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIF---YGTEEGSEGKTA 315
+ + + P A+R K L +D L D+ F + T E A
Sbjct: 193 AVERLAASLAGCGPQALRQQKRLLREWED--MPLDVAIDDSVAEFGAAFLTGEPQRHMAA 250
Query: 316 FVERRR 321
F+ R+R
Sbjct: 251 FLNRKR 256
|
Length = 256 |
| >gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 2e-19
Identities = 67/225 (29%), Positives = 104/225 (46%), Gaps = 28/225 (12%)
Query: 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQA- 136
G+A I +NRP +RNA + L AF + V ++L G+G + FC+G D +
Sbjct: 9 DGGVATIGLNRPAKRNALNDGLIAALRAAFARLPEG--VRAVVLHGEG-DHFCAGLDLSE 65
Query: 137 LRTRDGYAD-------YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL 189
LR RD + F + I+ PVIA + G VGGG L +
Sbjct: 66 LRERDAGEGMHHSRRWHRVFDK---------IQYGRVPVIAALHGAVVGGGLELASAAHI 116
Query: 190 TIAADNAIF----GQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMG 245
+A ++ F GQ G VG G GS + RL+G + +M R Y A+E E++G
Sbjct: 117 RVADESTYFALPEGQRGIFVG----GGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLG 172
Query: 246 LVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHA 290
L +VP + + ++ +R I +N+P + +AL + D A
Sbjct: 173 LAQYLVPAGEALDKAMELARRIAQNAPLTNFAVLNALPRIADMSA 217
|
Length = 255 |
| >gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 3e-19
Identities = 65/252 (25%), Positives = 110/252 (43%), Gaps = 21/252 (8%)
Query: 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTR 140
+A +T+N P N + +++ L + + D V +++TG G + F +G D L
Sbjct: 13 VAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGAD--LNL- 68
Query: 141 DGYADYENFGRLNVLDLQVQ--------IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
+AD G V + + IA + GYA+GGG + CD+ IA
Sbjct: 69 --FAD----GDKAVAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIA 122
Query: 193 ADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
+ A VG G+ + LVG A+ M A A ++GLV VV
Sbjct: 123 EEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVE 182
Query: 253 LEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH--AGLQTLGGDATLIFYGTEEGS 310
+ + + ++++ SP+A+ K+ + A +G A L L + + + TE+
Sbjct: 183 KGEAREAALALAQKVANQSPSAVAACKTLIQAARNGPRAAAL-ALERELFVDLFDTEDQR 241
Query: 311 EGKTAFVERRRP 322
EG AF+E+R P
Sbjct: 242 EGVNAFLEKRAP 253
|
Length = 258 |
| >gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 3e-19
Identities = 54/210 (25%), Positives = 99/210 (47%), Gaps = 9/210 (4%)
Query: 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE-AF 129
++ G+ I NRP+++NA + +A A D ++ + G TE F
Sbjct: 6 LVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLG--TEGCF 63
Query: 130 CSGGDQA--LRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
+G D L G + + +LD + + KP+++ V G A+G G +H+ C
Sbjct: 64 SAGNDMQDFLAAAMGGTSFGS----EILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHC 119
Query: 188 DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLV 247
DLT A+ ++F + S + RL+G ++A + L ++AE A++ GL+
Sbjct: 120 DLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLI 179
Query: 248 NTVVPLEKLEQETIKWSREILRNSPTAIRV 277
+V E +E ET+K + E+ P A+++
Sbjct: 180 WKIVDEEAVEAETLKAAEELAAKPPQALQI 209
|
Length = 251 |
| >gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 7e-18
Identities = 67/270 (24%), Positives = 118/270 (43%), Gaps = 26/270 (9%)
Query: 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
++ ++ + +A I +NRP+ NA +KEL++A +SS +++L G G
Sbjct: 3 SKMESVVVKYE--GRVATIMLNRPEALNALDEPMLKELLQAL-KEVAESSAHIVVLRGNG 59
Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI----RRLPKPVIAMVAGYAVGGGH 181
F +GGD + D F V++ +I +PK I+ + G A G G
Sbjct: 60 -RGFSAGGDIKMMLSSN--DESKFDG--VMNTISEIVVTLYTMPKLTISAIHGPAAGLGL 114
Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEA 241
+ + D IA +A +G G G + + VG KA+++ + + +A EA
Sbjct: 115 SIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEA 174
Query: 242 EKMGLVNTVV---PLEKLEQETIKWSREILRNSPTAIRVL----KSALNAVDDGHAGLQT 294
+GL++ V+ +Q+ +W ++ L+ ++ +S L V LQ
Sbjct: 175 LDLGLIDEVIGGDFQTAAKQKISEWLQKPLKAMIETKQIYCELNRSQLEQV------LQ- 227
Query: 295 LGGDATLIFYGTEEGSEGKTAFVERRRPDF 324
L A T + EG AF+E+R P F
Sbjct: 228 LEKRAQYAMRQTADHKEGIRAFLEKRLPVF 257
|
Length = 260 |
| >gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 3e-17
Identities = 67/257 (26%), Positives = 107/257 (41%), Gaps = 30/257 (11%)
Query: 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
EG A +T++RPD+ NA E I D + V+I+TG+G AFC G D +
Sbjct: 8 EGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEG-RAFCVGADLSEF 66
Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
D D + +IR K I+ + G G + + D A+ + F
Sbjct: 67 APDFAIDLRE----TFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKF 122
Query: 199 GQTGPKVG-SFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV-PLEKL 256
++G + D G + + +L G ++ E+ L +TAEEAE+ GL+ PL
Sbjct: 123 VTAFQRLGLASDTGV-AYFLLKLTG-QRFYEILVLGGEFTAEEAERWGLLKISEDPL--- 177
Query: 257 EQETIKWSREILRNSP---------TAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGTE 307
+ + + I N P VL + L + + +Q G TE
Sbjct: 178 -SDAEEMANRIS-NGPFQSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGK-------TE 228
Query: 308 EGSEGKTAFVERRRPDF 324
+ EG ++F E+R P F
Sbjct: 229 DFKEGISSFKEKREPKF 245
|
Length = 248 |
| >gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 1e-15
Identities = 75/277 (27%), Positives = 129/277 (46%), Gaps = 31/277 (11%)
Query: 72 IYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCS 131
I +K+ + + +NRP +RNA E +A + + +V VIIL+G G + FCS
Sbjct: 9 IIQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAG-DHFCS 67
Query: 132 GGD----QALRTRDGYADYENFG---RLNVLDLQ---VQIRRLPKPVIAMVAGYAVGGGH 181
G D ++ + D G R + LQ I + KPVIA + G +GGG
Sbjct: 68 GIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGV 127
Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI--MSRL---VGPKKAREMWFLARFY 236
+ CD+ +++A F V D + + + RL VG A E+ R +
Sbjct: 128 DIVTACDIRYCSEDAFF-----SVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRF 182
Query: 237 TAEEAEKMGLVNTVVPLEKLEQETIKWSRE-ILRNSPTAIR-----VLKSALNAVDDGHA 290
+ EA+++GLV+ V ++ E ++ E I SP A+ +L+S +V+ G
Sbjct: 183 SGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVTGTKAVLLRSRELSVEQGLD 242
Query: 291 GLQTLGGDATLIFYGTEEGSEGKTAFVERRRPDFLKF 327
+ T A L+ +++ +E +A +++R+P F K
Sbjct: 243 YVATW-NSAMLV---SDDLNEAVSAQIQKRKPVFAKL 275
|
Length = 275 |
| >gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 5e-14
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 17/188 (9%)
Query: 79 EGIAKITINRPDRR-NAFRPHTVKELIRAFNDARDDSSV-GVIILTGKGTEAFCSGGD-- 134
+ IA ITI+ P + N + +++ R+D + GV+ ++GK + F +G D
Sbjct: 14 DNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGK-PDNFIAGADIN 72
Query: 135 --QALRTRDGYADYENFGRL--NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
A +T + E R + +I LP PV+A + G +GGG L + C
Sbjct: 73 MLAACKTA---QEAEALARQGQQLFA---EIEALPIPVVAAIHGACLGGGLELALACHYR 126
Query: 191 IAADNA--IFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVN 248
+ D+ + G ++G G+ + RL+G A +M + A++A K+GLV+
Sbjct: 127 VCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVD 186
Query: 249 TVVPLEKL 256
VVP L
Sbjct: 187 DVVPHSIL 194
|
Length = 708 |
| >gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 5e-14
Identities = 65/236 (27%), Positives = 100/236 (42%), Gaps = 37/236 (15%)
Query: 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF 129
I A+ +GIA++ + P N F T+ L +A + + SS+ +ILT G +AF
Sbjct: 6 KTIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILT-SGKDAF 64
Query: 130 CSGGD---------QALRTRDGYADYEN--FGRLNVLDLQVQIRRLPKPVIAMVAGYAVG 178
G D + + N F +L LP P +A + G A+G
Sbjct: 65 IVGADITEFLGLFALPDAELIQWLLFANSIFNKL---------EDLPVPTVAAINGIALG 115
Query: 179 GGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYT 237
GG + D IA D A G K+G G+G ++ + R++G A E +
Sbjct: 116 GGCECVLATDFRIADDTAKIGLPETKLGIM-PGFGGTVRLPRVIGADNALEWIASGKENR 174
Query: 238 AEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQ 293
AE+A K+G V+ VV +KL A+++LK A+N D A Q
Sbjct: 175 AEDALKVGAVDAVVTADKLGA--------------AALQLLKDAINGKLDWKAKRQ 216
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714 |
| >gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 27/226 (11%)
Query: 72 IYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSV-GVIILTGKGTEAFC 130
+ + +GIA++ + P N T+ L A + S + G+++ + K AF
Sbjct: 8 LQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKD--AFI 65
Query: 131 SGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
G D +L + N + ++ LP P +A + GYA+GGG +
Sbjct: 66 VGADITEFLSLFAAPEEELSQWLHFAN--SIFNRLEDLPVPTVAAINGYALGGGCECVLA 123
Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLA-RFYTAEEAEKM 244
D +A+ +A G K+G G+G ++ + RL+G A E W A + AE+A K+
Sbjct: 124 TDYRVASPDARIGLPETKLGIM-PGFGGTVRLPRLIGADNALE-WIAAGKDVRAEDALKV 181
Query: 245 GLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHA 290
G V+ VV EKL++ A+ +LK A+ D A
Sbjct: 182 GAVDAVVAPEKLQE--------------AALALLKQAIAGKLDWKA 213
|
Length = 715 |
| >gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 1e-12
Identities = 49/192 (25%), Positives = 92/192 (47%), Gaps = 13/192 (6%)
Query: 79 EGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSV-GVIILTGKGTEAFCSGGD-- 134
+GIA +TI+ P ++ N + ++ + + D S+ G+++++GK + F +G D
Sbjct: 9 DGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGK-PDNFIAGADIS 67
Query: 135 --QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
A +T G+ L ++ LP PV+A + G +GGG L + C +
Sbjct: 68 MLAACQTAGEAKALAQQGQ----VLFAELEALPIPVVAAIHGACLGGGLELALACHSRVC 123
Query: 193 ADN--AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250
+D+ + G ++G G+ + RL+G A +M + A++A K+GLV+ V
Sbjct: 124 SDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDV 183
Query: 251 VPLEKLEQETIK 262
VP L ++
Sbjct: 184 VPQSILLDTAVE 195
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699 |
| >gnl|CDD|236338 PRK08788, PRK08788, enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 4e-11
Identities = 58/201 (28%), Positives = 81/201 (40%), Gaps = 23/201 (11%)
Query: 88 RPDRRNAFRPHTVKELIRAFNDAR---DDSSVGV--IILTGKGTEAFCSGGDQAL----- 137
R R F + +++ R DDS + V +L F GGD AL
Sbjct: 33 RAQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELI 92
Query: 138 --RTRDGYADYENFGRLNVLDLQVQIRRLPKPV--IAMVAGYAVGGGHVLHMVCDLTIAA 193
RD Y R V + R IA+V G A+GGG + IA
Sbjct: 93 RAGDRDALLAY---ARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAE 149
Query: 194 DNAIFGQTGPKVGSFD--AGYGS-SIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250
A G P++ F+ G G+ S ++R VGPK A E+ + YTAEE MGLV+ +
Sbjct: 150 RGAKMGF--PEI-LFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLVDVL 206
Query: 251 VPLEKLEQETIKWSREILRNS 271
V + E + R+ R
Sbjct: 207 VEDGQGEAAVRTFIRKSKRKL 227
|
Length = 287 |
| >gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 5e-10
Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 4/142 (2%)
Query: 84 ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143
+T+NRP + NA H + L++ F +D SV ++IL G G AFC+GGD A RD
Sbjct: 22 LTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHG-RAFCAGGDVAAVVRDIE 80
Query: 144 ADYENFGRLNVLD---LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200
G D L + K ++++ G +GGG + + IA +N +F
Sbjct: 81 QGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAM 140
Query: 201 TGPKVGSFDAGYGSSIMSRLVG 222
+G F S +SRL G
Sbjct: 141 PETALGLFPDVGASYFLSRLPG 162
|
Length = 381 |
| >gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 6e-10
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 15/119 (12%)
Query: 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF 129
+++ E G G+ IT+NRP NA ++ + A + DD +V +++ G G F
Sbjct: 4 EVLAEVEGGVGV--ITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGF 61
Query: 130 CSGGD-----QALRTRDGYADYENFG---RLNVLDLQVQIRRLPKPVIAMVAGYAVGGG 180
C+GGD +A R D A F RLN L I R PKP IA++ G +GGG
Sbjct: 62 CAGGDIRALYEAARAGDPLAADRFFREEYRLNAL-----IARYPKPYIALMDGIVMGGG 115
|
Length = 342 |
| >gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 3e-09
Identities = 46/212 (21%), Positives = 84/212 (39%), Gaps = 11/212 (5%)
Query: 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QAL 137
+ + ++RP+ +N + E + + +++ ++L G E FC G D A+
Sbjct: 12 GDVCFLQLHRPEAQNTINDRLIAECMDVLDRCEHAATI--VVLEGL-PEVFCFGADFSAI 68
Query: 138 RTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAI 197
+ + + DL ++ P IA V G GG D+ IA + A
Sbjct: 69 AEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAP 128
Query: 198 FGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLE 257
F + G A + R +G +KA M + + TA++A GLV+
Sbjct: 129 FSLSELLFGLIPACV-LPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGA----N 183
Query: 258 QETI--KWSREILRNSPTAIRVLKSALNAVDD 287
+T+ K + + A+ KS + +DD
Sbjct: 184 SDTLLRKHLLRLRCLNKAAVARYKSYASTLDD 215
|
Length = 255 |
| >gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 1e-08
Identities = 55/188 (29%), Positives = 76/188 (40%), Gaps = 27/188 (14%)
Query: 84 ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT-RDG 142
IT+NRP + N V L D SV +II+ G G AF +GGD L+ DG
Sbjct: 24 ITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAG-RAFSAGGD--LKMFYDG 80
Query: 143 YADYENFGRLNVLD----LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
++ L V+ L I K +A+V G +GGG L + + + +F
Sbjct: 81 RESDDSC--LEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVF 138
Query: 199 GQTGPKVG-SFDAGYGSSIMSRLVGPKKAREMWFLARFYT-------AEEAEKMGLVNTV 250
VG D G+ S I+SRL G L + +E GL
Sbjct: 139 ATPEASVGFHTDCGF-SYILSRLPG--------HLGEYLALTGARLNGKEMVACGLATHF 189
Query: 251 VPLEKLEQ 258
VP EKL +
Sbjct: 190 VPSEKLPE 197
|
Length = 379 |
| >gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 2e-08
Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 6/167 (3%)
Query: 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI 216
L + + P P++ V G +GGG + +L AA +A GQ +G F A S +
Sbjct: 81 LVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVF-APAASCL 139
Query: 217 MSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSRE-ILRNSPTAI 275
+ +G A ++ + R E ++GL N V E E + W E + S +++
Sbjct: 140 LPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVA--EDPENAALAWFDEHPAKLSASSL 197
Query: 276 R--VLKSALNAVDDGHAGLQTLGGDATLIFYGTEEGSEGKTAFVERR 320
R V + L + A + + T + EG AF+E+R
Sbjct: 198 RFAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKR 244
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. Length = 251 |
| >gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-08
Identities = 44/200 (22%), Positives = 84/200 (42%), Gaps = 16/200 (8%)
Query: 80 GIAKITINRPDRR-NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QAL 137
+A + I+ P+ + N E N+ + ++ +L +F +G D Q +
Sbjct: 22 DVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMI 81
Query: 138 RTRDGYADYENFGRLNVLDLQVQIRRL---PKPVIAMVAGYAVGGGHVLHMVCDLTIAAD 194
+ + + Q R+ KP++A ++G +GGG L + C IA
Sbjct: 82 AACKTAQEVTQLSQ----EGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATK 137
Query: 195 NAIFGQTGPKV--GSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252
+ P+V G G+ + +L G A +M + A+ A+KMG+V+ +V
Sbjct: 138 DRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIVDQLVD 197
Query: 253 -----LEKLEQETIKWSREI 267
L+ E+ TI++ E+
Sbjct: 198 PLGPGLKPAEENTIEYLEEV 217
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737 |
| >gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 3e-07
Identities = 49/180 (27%), Positives = 77/180 (42%), Gaps = 14/180 (7%)
Query: 54 DVVWRIACDESGTEFT----DIIYEKAV-GEGIAKITI-NRPDRRNAFRPHTVKELIRAF 107
D +WR S D+ Y+ V G G ++ I NRP NA H L + +
Sbjct: 14 DKLWRFGYRRSFCSLKLTPEDLDYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLY 73
Query: 108 NDARDDSSVGVIILTGKGTEAFCSGGDQA----LRTRDGYADYENFGRLNVLDLQVQIRR 163
+ +D ++G +++ G G AFC+GGD LR R F ++ +
Sbjct: 74 KNWEEDPNIGFVMMKGSG-RAFCAGGDIVSLYHLRKRGSPDAIREFFS-SLYSFIYLLGT 131
Query: 164 LPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVG 222
KP +A++ G +GGG + + +A D IF +G F G+S +S L G
Sbjct: 132 YLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIG-FHPDAGASFNLSHLPG 190
|
Length = 401 |
| >gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 3e-06
Identities = 46/193 (23%), Positives = 75/193 (38%), Gaps = 28/193 (14%)
Query: 51 PSHDVVW-RIACDESGTEFT--------DIIYEKAVGEGIAK---ITINRPDRRNAFRPH 98
+ + W R G F+ D + ++ + EG AK +NRP NA
Sbjct: 10 VAVPLQWVRFGSVSYGRSFSALPNYAANDDLQDQVLVEGRAKSRAAILNRPSSLNALTIP 69
Query: 99 TVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD--------QALRTRDGYADYENFG 150
V L R + ++ +G +++ G G AFCSG D + +EN
Sbjct: 70 MVARLKRLYESWEENPDIGFVLMKGSG-RAFCSGADVVSLYHLINEGNVEECKLFFENLY 128
Query: 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSF-D 209
+ L KP +A++ G +G G + + + D +F ++G D
Sbjct: 129 KFVYL-----QGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPD 183
Query: 210 AGYGSSIMSRLVG 222
AG S +SRL G
Sbjct: 184 AG-ASYYLSRLPG 195
|
Length = 407 |
| >gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-05
Identities = 42/186 (22%), Positives = 69/186 (37%), Gaps = 19/186 (10%)
Query: 102 ELIRAFNDA-----RDDSSVGVIILTGKGTEAFCSGGD----QALRTRDGYADYENFGRL 152
+ R+ +DA D + GV+ +G + F +G D A +T A Y F
Sbjct: 38 AMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKT--SAARYAEFWLT 95
Query: 153 NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG----QTGPKVGSF 208
L V++ R + + G GG + + CD + G G V F
Sbjct: 96 QTTFL-VRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKF 154
Query: 209 DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREIL 268
+ M R++ K A + R EA+++GL++ VVP L + L
Sbjct: 155 ---WARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERAL 211
Query: 269 RNSPTA 274
+ A
Sbjct: 212 KLPSAA 217
|
Length = 278 |
| >gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 8e-05
Identities = 61/243 (25%), Positives = 91/243 (37%), Gaps = 48/243 (19%)
Query: 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARD--DSSVGVIILTGKGTEAFCSGG-DQ 135
+G+A IT++ + NA P +I A N A D + V+++TG+ SGG D
Sbjct: 11 DGVATITLDD-GKVNALSP----AMIDALNAALDQAEDDRAVVVITGQ--PGIFSGGFDL 63
Query: 136 ALRTRDGYADYENFGRLNVLDL----QVQIRRL---PKPVIAMVAGYAVGGGHVLHMVCD 188
+ T G + L RRL PKPVI G+A+ G L + D
Sbjct: 64 KVMTS---------GAQAAIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSAD 114
Query: 189 LTIAADN---------AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE 239
I AI G T P + + P + A + E
Sbjct: 115 YRIGVHGPFKIGLNEVAI-GMTMPH-------AAIELARDRLTPSAFQRAVINAEMFDPE 166
Query: 240 EAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTA-----IRVLKSALNAVDDGHAGLQT 294
EA G ++ VVP E+L +RE+ + A ++V +AL A+ G
Sbjct: 167 EAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAHAATKLKVRAAALEAIRAAIEGDAA 226
Query: 295 LGG 297
G
Sbjct: 227 EFG 229
|
Length = 229 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 331 | |||
| PLN02921 | 327 | naphthoate synthase | 100.0 | |
| COG0447 | 282 | MenB Dihydroxynaphthoic acid synthase [Coenzyme me | 100.0 | |
| KOG1680 | 290 | consensus Enoyl-CoA hydratase [Lipid transport and | 100.0 | |
| PRK07396 | 273 | dihydroxynaphthoic acid synthetase; Validated | 100.0 | |
| TIGR01929 | 259 | menB naphthoate synthase (dihydroxynaphthoic acid | 100.0 | |
| TIGR03210 | 256 | badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb | 100.0 | |
| PRK09076 | 258 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05862 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06142 | 272 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05980 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02600 | 251 | enoyl-CoA hydratase | 100.0 | |
| PRK07799 | 263 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05809 | 260 | 3-hydroxybutyryl-CoA dehydratase; Validated | 100.0 | |
| PRK06563 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07657 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06127 | 269 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08150 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09674 | 255 | enoyl-CoA hydratase-isomerase; Provisional | 100.0 | |
| PRK08140 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06144 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06494 | 259 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR02280 | 256 | PaaB1 phenylacetate degradation probable enoyl-CoA | 100.0 | |
| PRK07658 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09245 | 266 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05995 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08139 | 266 | enoyl-CoA hydratase; Validated | 100.0 | |
| PLN02664 | 275 | enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA | 100.0 | |
| PRK05674 | 265 | gamma-carboxygeranoyl-CoA hydratase; Validated | 100.0 | |
| PRK07327 | 268 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08252 | 254 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08258 | 277 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08321 | 302 | naphthoate synthase; Validated | 100.0 | |
| PRK05981 | 266 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07659 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07468 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK11423 | 261 | methylmalonyl-CoA decarboxylase; Provisional | 100.0 | |
| PRK08138 | 261 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08260 | 296 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06210 | 272 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK03580 | 261 | carnitinyl-CoA dehydratase; Provisional | 100.0 | |
| PRK12478 | 298 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06143 | 256 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05864 | 276 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07511 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06495 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09120 | 275 | p-hydroxycinnamoyl CoA hydratase/lyase; Validated | 100.0 | |
| PRK06688 | 259 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07509 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07260 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06023 | 251 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07854 | 243 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06072 | 248 | enoyl-CoA hydratase; Provisional | 100.0 | |
| COG1024 | 257 | CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi | 100.0 | |
| PLN02888 | 265 | enoyl-CoA hydratase | 100.0 | |
| TIGR03189 | 251 | dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy | 100.0 | |
| PRK07938 | 249 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08259 | 254 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07112 | 255 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 100.0 | |
| PRK05870 | 249 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07827 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05617 | 342 | 3-hydroxyisobutyryl-CoA hydrolase; Provisional | 100.0 | |
| PLN02874 | 379 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| PLN03214 | 278 | probable enoyl-CoA hydratase/isomerase; Provisiona | 100.0 | |
| PF00378 | 245 | ECH: Enoyl-CoA hydratase/isomerase family; InterPr | 100.0 | |
| PRK07110 | 249 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 100.0 | |
| PRK06190 | 258 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02157 | 401 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 100.0 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 100.0 | |
| KOG1679 | 291 | consensus Enoyl-CoA hydratase [Lipid transport and | 100.0 | |
| PRK05869 | 222 | enoyl-CoA hydratase; Validated | 100.0 | |
| PRK08272 | 302 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08290 | 288 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08788 | 287 | enoyl-CoA hydratase; Validated | 100.0 | |
| PLN02851 | 407 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 100.0 | |
| TIGR03200 | 360 | dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy | 100.0 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 100.0 | |
| PRK06213 | 229 | enoyl-CoA hydratase; Provisional | 100.0 | |
| KOG1681 | 292 | consensus Enoyl-CoA isomerase [Lipid transport and | 100.0 | |
| PLN02988 | 381 | 3-hydroxyisobutyryl-CoA hydrolase | 100.0 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 100.0 | |
| PLN02267 | 239 | enoyl-CoA hydratase/isomerase family protein | 100.0 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 100.0 | |
| KOG0016 | 266 | consensus Enoyl-CoA hydratase/isomerase [Lipid tra | 100.0 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 100.0 | |
| KOG1682 | 287 | consensus Enoyl-CoA isomerase [Lipid transport and | 100.0 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 100.0 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 100.0 | |
| cd06558 | 195 | crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy | 100.0 | |
| KOG1684 | 401 | consensus Enoyl-CoA hydratase [Lipid transport and | 100.0 | |
| cd07014 | 177 | S49_SppA Signal peptide peptidase A. Signal peptid | 99.85 | |
| cd07020 | 187 | Clp_protease_NfeD_1 Nodulation formation efficienc | 99.85 | |
| cd07019 | 211 | S49_SppA_1 Signal peptide peptidase A (SppA), a se | 99.71 | |
| cd07022 | 214 | S49_Sppa_36K_type Signal peptide peptidase A (SppA | 99.66 | |
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 99.65 | |
| cd00394 | 161 | Clp_protease_like Caseinolytic protease (ClpP) is | 99.62 | |
| cd07023 | 208 | S49_Sppa_N_C Signal peptide peptidase A (SppA), a | 99.6 | |
| cd07016 | 160 | S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP- | 99.56 | |
| TIGR00706 | 207 | SppA_dom signal peptide peptidase SppA, 36K type. | 99.56 | |
| cd07018 | 222 | S49_SppA_67K_type Signal peptide peptidase A (SppA | 99.46 | |
| cd07021 | 178 | Clp_protease_NfeD_like Nodulation formation effici | 99.38 | |
| cd07015 | 172 | Clp_protease_NfeD Nodulation formation efficiency | 99.04 | |
| PRK10949 | 618 | protease 4; Provisional | 98.96 | |
| cd07013 | 162 | S14_ClpP Caseinolytic protease (ClpP) is an ATP-de | 98.91 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 98.83 | |
| PRK11778 | 330 | putative inner membrane peptidase; Provisional | 98.71 | |
| PRK00277 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 98.68 | |
| cd07017 | 171 | S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP- | 98.66 | |
| COG0616 | 317 | SppA Periplasmic serine proteases (ClpP class) [Po | 98.62 | |
| PRK12553 | 207 | ATP-dependent Clp protease proteolytic subunit; Re | 98.61 | |
| PRK14512 | 197 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.51 | |
| PF00574 | 182 | CLP_protease: Clp protease; InterPro: IPR001907 In | 98.49 | |
| PRK12319 | 256 | acetyl-CoA carboxylase subunit alpha; Provisional | 98.46 | |
| CHL00028 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 98.43 | |
| CHL00198 | 322 | accA acetyl-CoA carboxylase carboxyltransferase al | 98.4 | |
| TIGR00493 | 191 | clpP ATP-dependent Clp protease, proteolytic subun | 98.39 | |
| PLN03230 | 431 | acetyl-coenzyme A carboxylase carboxyl transferase | 98.38 | |
| PF01972 | 285 | SDH_sah: Serine dehydrogenase proteinase; InterPro | 98.37 | |
| TIGR00513 | 316 | accA acetyl-CoA carboxylase, carboxyl transferase, | 98.3 | |
| PRK05724 | 319 | acetyl-CoA carboxylase carboxyltransferase subunit | 98.3 | |
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 98.28 | |
| PF01343 | 154 | Peptidase_S49: Peptidase family S49 peptidase clas | 98.26 | |
| PRK12551 | 196 | ATP-dependent Clp protease proteolytic subunit; Re | 98.25 | |
| PRK14514 | 221 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.21 | |
| PLN03229 | 762 | acetyl-coenzyme A carboxylase carboxyl transferase | 98.21 | |
| PRK14513 | 201 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.15 | |
| PRK10949 | 618 | protease 4; Provisional | 98.02 | |
| TIGR03133 | 274 | malonate_beta malonate decarboxylase, beta subunit | 97.98 | |
| TIGR00515 | 285 | accD acetyl-CoA carboxylase, carboxyl transferase, | 97.9 | |
| TIGR03134 | 238 | malonate_gamma malonate decarboxylase, gamma subun | 97.89 | |
| PRK05654 | 292 | acetyl-CoA carboxylase subunit beta; Validated | 97.88 | |
| COG1030 | 436 | NfeD Membrane-bound serine protease (ClpP class) [ | 97.74 | |
| PRK07189 | 301 | malonate decarboxylase subunit beta; Reviewed | 97.72 | |
| COG0740 | 200 | ClpP Protease subunit of ATP-dependent Clp proteas | 97.68 | |
| CHL00174 | 296 | accD acetyl-CoA carboxylase beta subunit; Reviewed | 97.61 | |
| PRK12552 | 222 | ATP-dependent Clp protease-like protein; Reviewed | 97.61 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 97.4 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 97.34 | |
| PF13766 | 118 | ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PD | 97.16 | |
| COG0777 | 294 | AccD Acetyl-CoA carboxylase beta subunit [Lipid me | 97.1 | |
| COG0825 | 317 | AccA Acetyl-CoA carboxylase alpha subunit [Lipid m | 96.82 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 96.75 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 96.73 | |
| COG4799 | 526 | Acetyl-CoA carboxylase, carboxyltransferase compon | 95.85 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 95.37 | |
| PLN02988 | 381 | 3-hydroxyisobutyryl-CoA hydrolase | 95.03 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 94.91 | |
| PLN02157 | 401 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 94.73 | |
| KOG0840 | 275 | consensus ATP-dependent Clp protease, proteolytic | 91.93 | |
| COG4799 | 526 | Acetyl-CoA carboxylase, carboxyltransferase compon | 86.84 | |
| PF02601 | 319 | Exonuc_VII_L: Exonuclease VII, large subunit; Inte | 81.82 | |
| TIGR00237 | 432 | xseA exodeoxyribonuclease VII, large subunit. This | 80.76 |
| >PLN02921 naphthoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-70 Score=514.26 Aligned_cols=327 Identities=78% Similarity=1.211 Sum_probs=285.6
Q ss_pred hHHHHHHHHHhhhcccCCCcCCCCCCccccccCCCCCccccccCCCCCccchhhhcccCCCCCcccEEEEEeeCCCEEEE
Q 020093 5 IDSARRRMTAVANHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKI 84 (331)
Q Consensus 5 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~I 84 (331)
|+++.||+++++|||+|.+.+++.+++-..+...+..+|+++|+.++.++..|...+..+..+|++|.++++.+++|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Va~I 80 (327)
T PLN02921 1 MDAARRRLARVANHLVPSANPASMAAARSSSATAPPDSYRRVHGDVSSEPVVWRKVPDGSGKEFTDIIYEKAVGEGIAKI 80 (327)
T ss_pred CchhhhHHHHHhcccCcccccccccccccccccCCCCchhhhccccCCCCccccccccCCccCCceEEEEEecCCCEEEE
Confidence 78999999999999998876666666544445588899999999999999999987776777899999987223899999
Q ss_pred EEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcC
Q 020093 85 TINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRL 164 (331)
Q Consensus 85 tLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 164 (331)
|||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.|+++||+|+|++++.................+++..|.++
T Consensus 81 tLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 160 (327)
T PLN02921 81 TINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRL 160 (327)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999669999999997643211111111111234567789999
Q ss_pred CCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhc
Q 020093 165 PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKM 244 (331)
Q Consensus 165 ~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~ 244 (331)
||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|.++|++|+++|+.++|+||+++
T Consensus 161 ~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~ 240 (327)
T PLN02921 161 PKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKM 240 (327)
T ss_pred CCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCC
Q 020093 245 GLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGTEEGSEGKTAFVERRRPDF 324 (331)
Q Consensus 245 GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~s~d~~egi~aflekr~p~f 324 (331)
||||+|||.+++++++.++|++|++.+|.+++.+|++++...+........+...+..++.++|++||+++|+|||+|+|
T Consensus 241 GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f 320 (327)
T PLN02921 241 GLVNTVVPLDELEGETVKWCREILRNSPTAIRVLKSALNAADDGHAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDF 320 (327)
T ss_pred CCceEEeCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999986554333333344566778899999999999999999999
Q ss_pred CCCCCCC
Q 020093 325 LKFPRRP 331 (331)
Q Consensus 325 ~~~~~~~ 331 (331)
+++|+.|
T Consensus 321 ~~~~~~~ 327 (327)
T PLN02921 321 SKFPRLP 327 (327)
T ss_pred CCCCCCC
Confidence 9999887
|
|
| >COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-62 Score=422.36 Aligned_cols=266 Identities=68% Similarity=1.116 Sum_probs=250.8
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeC--CCCceeccccccchhc-C
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK--GTEAFCSGGDQALRTR-D 141 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~--g~~~FcaG~Dl~~~~~-~ 141 (331)
..+|++|+|++. .++|+.||+|||+++|++.+.++.||.++|..+..|++|.+|||||+ |+++||+|+|.+.... .
T Consensus 14 ~~~y~dI~Y~~~-~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~ 92 (282)
T COG0447 14 FEGYEDITYEKS-VDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSG 92 (282)
T ss_pred cCCcceeEEeec-cCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCC
Confidence 457999999993 38999999999999999999999999999999999999999999975 8899999999987655 3
Q ss_pred CCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhh
Q 020093 142 GYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221 (331)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v 221 (331)
++...+...+++..++.+.|+.+||||||.|+|+|+|||..|.+.||+.||+++|+|++...++|.+.++.|+.+|.|+|
T Consensus 93 gY~~d~~~~rLnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~V 172 (282)
T COG0447 93 GYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIV 172 (282)
T ss_pred CccCCccCcccchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHh
Confidence 44445555677888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHH
Q 020093 222 GPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATL 301 (331)
Q Consensus 222 G~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~ 301 (331)
|.++|+|+++.++.++|+||++|||||.|||.++|++++.+||++|..+||.++++.|.++|...+++..++++..+++.
T Consensus 173 GqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~AlR~LK~Afnad~DGlaG~q~~ag~at~ 252 (282)
T COG0447 173 GQKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRMLKAAFNADCDGLAGLQELAGNATL 252 (282)
T ss_pred hhhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCchhhHHHHhcccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCChhHHHHHHHHhcCCCCCCCCCCCCC
Q 020093 302 IFYGTEEGSEGKTAFVERRRPDFLKFPRRP 331 (331)
Q Consensus 302 ~~~~s~d~~egi~aflekr~p~f~~~~~~~ 331 (331)
.++.+++.+||..||+|||+|+|.++|+.|
T Consensus 253 L~YmTdEa~EGr~AF~eKR~Pdf~~fp~~p 282 (282)
T COG0447 253 LYYMTDEAQEGRDAFLEKRKPDFSKFPRNP 282 (282)
T ss_pred EEEechhhhhhHHHHhhccCCChHhcCCCC
Confidence 999999999999999999999999999876
|
|
| >KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-61 Score=431.63 Aligned_cols=251 Identities=39% Similarity=0.561 Sum_probs=225.6
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhh
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 150 (331)
.+... +++|+.||||||+++|+|+..|+.||.++|..++.|+++.++||||.| ++||+|.||+++......+....
T Consensus 39 ~~~~~--d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~g-ksFcsG~Dl~e~~~~~~~~~~~~- 114 (290)
T KOG1680|consen 39 ELVGE--DNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSG-KSFCSGADLKEMKKDEFQDVSDG- 114 (290)
T ss_pred EEeec--CCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCC-CccccccCHHHHhhccccccccc-
Confidence 44445 899999999999999999999999999999999999999999999999 79999999999865433221111
Q ss_pred hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHH
Q 020093 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW 230 (331)
Q Consensus 151 ~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ 230 (331)
.+.+.+..+.+.+||+||+|||+|+|||+||+++||+|||+++|+|++++.++|++|.+||+.+|+|+||.++|++++
T Consensus 115 --~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ 192 (290)
T KOG1680|consen 115 --IFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMI 192 (290)
T ss_pred --cccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHH
Confidence 122334455589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHHHHHHhCChhH
Q 020093 231 FLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATLIFYGTEEG 309 (331)
Q Consensus 231 ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~s~d~ 309 (331)
+||++++|+||+++||||+|||.+++..+|.+|+++|++.||.++++.|+++|...+ .......++...+...+.++|.
T Consensus 193 ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~ 272 (290)
T KOG1680|consen 193 LTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVRADKESVNAAYETTLFEGLELERDLFGSTFATEDR 272 (290)
T ss_pred HhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccHHHHHHhhhhhhhhhhhhHHH
Confidence 999999999999999999999999999999999999999999999999999999665 3345567788888888999999
Q ss_pred HHHHHHHhcCCCCCCCCC
Q 020093 310 SEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 310 ~egi~aflekr~p~f~~~ 327 (331)
+|||.+|.|||+|+|.++
T Consensus 273 ~Eg~~~f~~kr~~~~~k~ 290 (290)
T KOG1680|consen 273 LEGMTAFAEKRKPKFSKK 290 (290)
T ss_pred HHHHHHhcccCCcccccC
Confidence 999999999999999863
|
|
| >PRK07396 dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-60 Score=441.51 Aligned_cols=265 Identities=69% Similarity=1.130 Sum_probs=233.4
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~ 144 (331)
..+|++|.++. +++|++||||||+++|+||.+|+.+|.++|+.++.|++||+|||+|.|+++||+|+||+++......
T Consensus 9 ~~~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~ 86 (273)
T PRK07396 9 CKEYEDILYKS--ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYV 86 (273)
T ss_pred CCCCcceEEEe--cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhccccc
Confidence 45678899998 9999999999999999999999999999999999999999999999995699999999986421111
Q ss_pred chhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 145 ~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
............++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~ 166 (273)
T PRK07396 87 DDDGVPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQK 166 (273)
T ss_pred chhhhhhhHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHH
Confidence 11111112234567789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHh
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFY 304 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~ 304 (331)
+|++|+++|+.++|+||+++||||+|||+++|++++.++|++|+..+|.+++.+|+.++..........+.+......++
T Consensus 167 ~a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~e~~~~~~~~ 246 (273)
T PRK07396 167 KAREIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFY 246 (273)
T ss_pred HHHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998765433223334555666778
Q ss_pred CChhHHHHHHHHhcCCCCCCCCCCCCC
Q 020093 305 GTEEGSEGKTAFVERRRPDFLKFPRRP 331 (331)
Q Consensus 305 ~s~d~~egi~aflekr~p~f~~~~~~~ 331 (331)
.++|++||+.+|++||+|+|++.|+.|
T Consensus 247 ~~~d~~egi~af~~kr~p~~~~~~~~~ 273 (273)
T PRK07396 247 MTEEAQEGRNAFNEKRQPDFSKFPRFP 273 (273)
T ss_pred cChhHHHHHHHHhCCCCCCCCCCCCCC
Confidence 899999999999999999999999877
|
|
| >TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-59 Score=430.11 Aligned_cols=258 Identities=69% Similarity=1.119 Sum_probs=224.5
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
++|.+++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.|+++||+|+|++++..........
T Consensus 2 ~~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 80 (259)
T TIGR01929 2 TDIRYEKS-TDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSG 80 (259)
T ss_pred ceEEEEEc-CCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhh
Confidence 45777752 58899999999999999999999999999999999999999999999966999999998764211111111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
........++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|++
T Consensus 81 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~ 160 (259)
T TIGR01929 81 VHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKARE 160 (259)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHH
Confidence 11122346777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHhCChh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGTEE 308 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~s~d 308 (331)
|+++|++++|+||+++||||+|||++++.+++.++|++|+..||.+++.+|++++............+...+..++.++|
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~e~~~~~~~~~~~d 240 (259)
T TIGR01929 161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAIRMLKAALNADCDGQAGLQELAGNATMLFYMTEE 240 (259)
T ss_pred HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999987654333333334456667889999
Q ss_pred HHHHHHHHhcCCCCCCCCC
Q 020093 309 GSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 309 ~~egi~aflekr~p~f~~~ 327 (331)
++||+++|++||+|+|+++
T Consensus 241 ~~egi~af~~kr~p~~~~~ 259 (259)
T TIGR01929 241 GQEGRNAFLEKRQPDFSKF 259 (259)
T ss_pred HHHHHHHHhccCCCCCCCC
Confidence 9999999999999999864
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches. |
| >TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-59 Score=428.84 Aligned_cols=256 Identities=50% Similarity=0.860 Sum_probs=224.4
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
|++|.+++ +++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.|+++||+|+|++++..... ...
T Consensus 1 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~~ 77 (256)
T TIGR03210 1 YEDILYEK--RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-GRG 77 (256)
T ss_pred CCceEEEe--eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-chh
Confidence 45688998 899999999999999999999999999999999999999999999999679999999998742111 111
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHH
Q 020093 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (331)
Q Consensus 148 ~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~ 227 (331)
.. ...+..++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|+
T Consensus 78 ~~-~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~ 156 (256)
T TIGR03210 78 TI-GLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAR 156 (256)
T ss_pred HH-HHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHH
Confidence 11 11245678889999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHhCCh
Q 020093 228 EMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 228 ~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~s~ 307 (331)
+|+++|++++|+||+++||||+|+|++++.+++.+++++|++.||.+++.+|++++...+........+...+..++.++
T Consensus 157 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (256)
T TIGR03210 157 EIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIAIAKRSFNMDTAHQRGIAGMGMYALKLYYDTA 236 (256)
T ss_pred HHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHccCh
Confidence 99999999999999999999999999999999999999999999999999999998764322111122334556678899
Q ss_pred hHHHHHHHHhcCCCCCCCCC
Q 020093 308 EGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 308 d~~egi~aflekr~p~f~~~ 327 (331)
|++||+++|++||+|+|+++
T Consensus 237 d~~e~~~af~~kr~p~~~~~ 256 (256)
T TIGR03210 237 ESREGVKAFQEKRKPEFRKY 256 (256)
T ss_pred hHHHHHHHHhccCCCCCCCC
Confidence 99999999999999999874
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. |
| >PRK09076 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-58 Score=423.06 Aligned_cols=255 Identities=24% Similarity=0.393 Sum_probs=227.3
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
+..|.+++ +++|++||||||++ |+||.+|+.+|.+++++++.|+++++|||+|+|+++||+|+||+++.........
T Consensus 2 ~~~v~~~~--~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~ 78 (258)
T PRK09076 2 MIELDLEI--DGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAR 78 (258)
T ss_pred ceEEEEEE--ECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHH
Confidence 34688888 89999999999986 9999999999999999999999999999999997799999999987532111111
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHH
Q 020093 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (331)
Q Consensus 148 ~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~ 227 (331)
.. ...+..++.+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|+
T Consensus 79 ~~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~ 157 (258)
T PRK09076 79 EM-ARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAK 157 (258)
T ss_pred HH-HHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHH
Confidence 11 11245677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCC
Q 020093 228 EMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGT 306 (331)
Q Consensus 228 ~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s 306 (331)
+|+++|+.++|+||+++||||+|+|++++.+++.+++++|+..+|.+++.+|++++..... .....+.+...+..++.+
T Consensus 158 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~ 237 (258)
T PRK09076 158 RMILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVAACKTLIQAARNGPRAAALALERELFVDLFDT 237 (258)
T ss_pred HHHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999876543 334456667778888999
Q ss_pred hhHHHHHHHHhcCCCCCCCC
Q 020093 307 EEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 307 ~d~~egi~aflekr~p~f~~ 326 (331)
+|++||+++|++||+|+|++
T Consensus 238 ~~~~eg~~af~~kr~p~~~~ 257 (258)
T PRK09076 238 EDQREGVNAFLEKRAPQWKN 257 (258)
T ss_pred chHHHHHHHHhcCCCCCCCC
Confidence 99999999999999999975
|
|
| >PRK05862 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-58 Score=422.08 Aligned_cols=254 Identities=35% Similarity=0.501 Sum_probs=227.6
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
++.+.+++ +++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+||+++..... .+
T Consensus 3 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~--~~ 77 (257)
T PRK05862 3 YETILVET--RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSE-KAFAAGADIKEMADLSF--MD 77 (257)
T ss_pred CceEEEEe--eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CceECCcChHhHhccch--hH
Confidence 45688888 899999999999999999999999999999999999999999999999 69999999998753211 11
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHH
Q 020093 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (331)
Q Consensus 148 ~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~ 227 (331)
.. ...+..++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|+
T Consensus 78 ~~-~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 156 (257)
T PRK05862 78 VY-KGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAM 156 (257)
T ss_pred HH-HHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHH
Confidence 11 11234567789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCC
Q 020093 228 EMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGT 306 (331)
Q Consensus 228 ~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s 306 (331)
+|+++|+.++|+||+++||||+|+|++++++++.+++++|++.+|.+++.+|++++..... .....+.|...+..++.+
T Consensus 157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s 236 (257)
T PRK05862 157 DLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAVMMAKEAVNRAYETTLAEGLLFERRLFHSLFAT 236 (257)
T ss_pred HHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999986543 334455666677788999
Q ss_pred hhHHHHHHHHhcCCCCCCCCC
Q 020093 307 EEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 307 ~d~~egi~aflekr~p~f~~~ 327 (331)
+|++||+++|++||+|.|+++
T Consensus 237 ~~~~e~i~af~~kr~p~~~~~ 257 (257)
T PRK05862 237 EDQKEGMAAFVEKRKPVFKHR 257 (257)
T ss_pred hhHHHHHHHHhccCCCCCCCC
Confidence 999999999999999999863
|
|
| >PRK06142 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-58 Score=426.30 Aligned_cols=258 Identities=28% Similarity=0.357 Sum_probs=227.5
Q ss_pred CCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC--
Q 020093 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-- 143 (331)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~-- 143 (331)
+.+++|.+++ +++|++||||||+++|+||.+|+.+|.++|++++.|++|++|||+|.| ++||+|+||+++.....
T Consensus 3 ~~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~ 79 (272)
T PRK06142 3 TTYESFTVEL--ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSG-KHFSYGIDLPAMAGVFGQL 79 (272)
T ss_pred CCcceEEEEe--cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhhhcccc
Confidence 3457799998 999999999999999999999999999999999999999999999999 69999999998743110
Q ss_pred ------cchhhhh--hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHH
Q 020093 144 ------ADYENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSS 215 (331)
Q Consensus 144 ------~~~~~~~--~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 215 (331)
....... ...+.+++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 159 (272)
T PRK06142 80 GKDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQ 159 (272)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHH
Confidence 0001111 11234677889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCC-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHH
Q 020093 216 IMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPL-EKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQ 293 (331)
Q Consensus 216 ~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~ 293 (331)
+|++++|..+|++|+++|++++|+||+++||||+|||+ +++.+.+.+++++|+..||.+++.+|+.++...+. .....
T Consensus 160 ~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~ 239 (272)
T PRK06142 160 RLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVRGTKEVLDYMRDHRVADGL 239 (272)
T ss_pred HHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHH
Confidence 99999999999999999999999999999999999996 88999999999999999999999999999976543 33444
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHhcCCCCCCCC
Q 020093 294 TLGGDATLIFYGTEEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 294 ~~~~~~~~~~~~s~d~~egi~aflekr~p~f~~ 326 (331)
+.+......++.++|++||+.+|++||+|+|++
T Consensus 240 ~~~~~~~~~~~~~~d~~egv~af~~kr~p~~~~ 272 (272)
T PRK06142 240 RYVATWNAAMLPSKDLTEAIAAHMEKRPPEFTG 272 (272)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHhcCCCCCCCC
Confidence 556666777889999999999999999999975
|
|
| >PRK05980 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-58 Score=423.35 Aligned_cols=253 Identities=31% Similarity=0.448 Sum_probs=225.3
Q ss_pred cEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc-chhh
Q 020093 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA-DYEN 148 (331)
Q Consensus 70 ~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~-~~~~ 148 (331)
.|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.|+++||+|+|++++...... ....
T Consensus 4 ~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (260)
T PRK05980 4 TVLIEI--RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVA 81 (260)
T ss_pred eEEEEE--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhh
Confidence 588888 8999999999999999999999999999999999999999999999996699999999986432110 1111
Q ss_pred h--hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 149 F--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 149 ~--~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
. .......++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|
T Consensus 82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 161 (260)
T PRK05980 82 LRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRA 161 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHH
Confidence 1 11123457778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYG 305 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~ 305 (331)
++|+++|++++|+||+++||||+|||++++.+++.+++++|++.+|.+++.+|++++...+. .......|...+..++.
T Consensus 162 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~ 241 (260)
T PRK05980 162 LELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHSPVAVAAILTAVTRGLNLSIAEGLLIESEQFARMAG 241 (260)
T ss_pred HHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999876543 33445666677788899
Q ss_pred ChhHHHHHHHHhcCCCCCC
Q 020093 306 TEEGSEGKTAFVERRRPDF 324 (331)
Q Consensus 306 s~d~~egi~aflekr~p~f 324 (331)
++|++||+++|++||+|+|
T Consensus 242 ~~~~~e~~~af~~kr~p~~ 260 (260)
T PRK05980 242 SADLREGLAAWIERRRPAY 260 (260)
T ss_pred ChhHHHHHHHHhccCCCCC
Confidence 9999999999999999998
|
|
| >PLN02600 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-58 Score=420.27 Aligned_cols=249 Identities=29% Similarity=0.478 Sum_probs=222.1
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHH
Q 020093 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (331)
Q Consensus 78 ~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (331)
+++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||.|+++||+|+|++++..........+ ...+..+
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~-~~~~~~~ 80 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKF-VNSLRST 80 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHH-HHHHHHH
Confidence 578999999999999999999999999999999999999999999986579999999998753211111111 1224567
Q ss_pred HHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCC
Q 020093 158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT 237 (331)
Q Consensus 158 ~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~ 237 (331)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..++++|+++|+.++
T Consensus 81 ~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~ 160 (251)
T PLN02600 81 FSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIG 160 (251)
T ss_pred HHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCChhHHHHHHHH
Q 020093 238 AEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTEEGSEGKTAF 316 (331)
Q Consensus 238 a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~af 316 (331)
++||+++||||++||++++.+++.+++++|++.||.+++.+|++++..... .......+...+..++.++|++||+++|
T Consensus 161 a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af 240 (251)
T PLN02600 161 AREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIKMAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAF 240 (251)
T ss_pred HHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999976543 3344556667778889999999999999
Q ss_pred hcCCCCCCCCC
Q 020093 317 VERRRPDFLKF 327 (331)
Q Consensus 317 lekr~p~f~~~ 327 (331)
+|||+|+|+++
T Consensus 241 ~ekr~p~~~~~ 251 (251)
T PLN02600 241 AEKRKPVYTGK 251 (251)
T ss_pred hcCCCCCCCCC
Confidence 99999999763
|
|
| >PRK07799 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-58 Score=422.05 Aligned_cols=257 Identities=26% Similarity=0.410 Sum_probs=224.9
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
.++.+.+++ +++|++||||||+++|+||.+|+++|.+++++++.|++|++|||||.| ++||+|+|++++........
T Consensus 3 ~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~ 79 (263)
T PRK07799 3 GGPHALVEQ--RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAG-GAFCAGMDLKAATKKPPGDS 79 (263)
T ss_pred CCceEEEEE--ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccccCHHHHhhccccch
Confidence 356789998 899999999999999999999999999999999999999999999999 69999999998753211100
Q ss_pred -h-h-hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCH
Q 020093 147 -E-N-FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP 223 (331)
Q Consensus 147 -~-~-~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 223 (331)
. . .....+.. +..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.
T Consensus 80 ~~~~~~~~~~~~~-~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 158 (263)
T PRK07799 80 FKDGSYDPSRIDA-LLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPY 158 (263)
T ss_pred hhhhhhhhhHHHH-HHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCH
Confidence 0 0 00011122 235789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHH
Q 020093 224 KKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLI 302 (331)
Q Consensus 224 ~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~ 302 (331)
++|++|+++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++.+|+.++..... .....+.+......
T Consensus 159 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~ 238 (263)
T PRK07799 159 TVACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANGPLAVQAILRTIRETEGMHENEAFKIDTKIGIP 238 (263)
T ss_pred HHHHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999976543 23444556666777
Q ss_pred HhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 303 FYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 303 ~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
++.++|++||+++|++||+|+|+++
T Consensus 239 ~~~~~~~~egi~af~~~r~p~~~~~ 263 (263)
T PRK07799 239 VFLSEDAKEGPRAFAEKRAPNFQGR 263 (263)
T ss_pred HhcCccHHHHHHHHHccCCCCCCCC
Confidence 8899999999999999999999863
|
|
| >PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-58 Score=420.92 Aligned_cols=258 Identities=36% Similarity=0.519 Sum_probs=230.4
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
+|+.+.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++........
T Consensus 2 ~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~ 79 (260)
T PRK05809 2 ELKNVILEK--EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEG 79 (260)
T ss_pred CcceEEEEE--eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHH
Confidence 456789998 899999999999999999999999999999999999999999999999669999999998753211111
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
... ......++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 80 ~~~-~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 158 (260)
T PRK05809 80 RKF-GLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKA 158 (260)
T ss_pred HHH-HHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 111 1123467788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYG 305 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~ 305 (331)
++|+++|+.++|+||+++||||+|+|++++.+.+.+++++|+..||.+++.+|+.++...+. .....+.|...+..++.
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~ 238 (260)
T PRK05809 159 KELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVKLCKDAINRGMQVDIDTAVAIEAEDFGECFS 238 (260)
T ss_pred HHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999976543 33445667777888899
Q ss_pred ChhHHHHHHHHhcCCCCCCCCC
Q 020093 306 TEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 306 s~d~~egi~aflekr~p~f~~~ 327 (331)
++|++||+++|++||+|+|+++
T Consensus 239 ~~~~~egi~af~~~r~p~~~~~ 260 (260)
T PRK05809 239 TEDQTEGMTAFVEKREKNFKNK 260 (260)
T ss_pred CHHHHHHHHHHhcCCCCCCCCC
Confidence 9999999999999999999864
|
|
| >PRK06563 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-58 Score=421.14 Aligned_cols=253 Identities=26% Similarity=0.337 Sum_probs=220.9
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhh
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 150 (331)
|.+++ +++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++............
T Consensus 1 ~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~ 77 (255)
T PRK06563 1 VSRER--RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHG-EHFTAGLDLADVAPKLAAGGFPFP 77 (255)
T ss_pred CeEEE--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CCCcCCcCHHHHhhccccchhhhh
Confidence 45677 899999999999999999999999999999999999999999999999 699999999987432111111111
Q ss_pred hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHH
Q 020093 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW 230 (331)
Q Consensus 151 ~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ 230 (331)
......+...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.++|++|+
T Consensus 78 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ 157 (255)
T PRK06563 78 EGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYL 157 (255)
T ss_pred hhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHH
Confidence 11112233358899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCChhH
Q 020093 231 FLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTEEG 309 (331)
Q Consensus 231 ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~ 309 (331)
++|+.++|+||+++||||+|+|++++.+++.+++++|++.+|.+++.+|+.++..... .....+.+...+..++.++|+
T Consensus 158 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~ 237 (255)
T PRK06563 158 LTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAAPLGVQATLASARAAVREGEAAAAAQLPPELRPLFTSEDA 237 (255)
T ss_pred HcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchH
Confidence 9999999999999999999999999999999999999999999999999999876432 334445556667778899999
Q ss_pred HHHHHHHhcCCCCCCCC
Q 020093 310 SEGKTAFVERRRPDFLK 326 (331)
Q Consensus 310 ~egi~aflekr~p~f~~ 326 (331)
+||+++|++||+|.|++
T Consensus 238 ~eg~~af~~kr~p~~~~ 254 (255)
T PRK06563 238 KEGVQAFLERRPARFKG 254 (255)
T ss_pred HHHHHHHhcCCCCCCCC
Confidence 99999999999999976
|
|
| >PRK07657 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=420.18 Aligned_cols=257 Identities=31% Similarity=0.453 Sum_probs=228.1
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
++|.+++. +++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||+|.|+++||+|+|++++........ .
T Consensus 3 ~~v~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~-~ 80 (260)
T PRK07657 3 QNISVDYV-TPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQV-R 80 (260)
T ss_pred ceEEEEEc-cCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhH-H
Confidence 46788752 689999999999999999999999999999999999999999999999669999999998743211111 1
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
.....+..++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++
T Consensus 81 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~ 160 (260)
T PRK07657 81 HAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKE 160 (260)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHH
Confidence 11123456788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCCh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~ 307 (331)
|+++|++++|+||+++||||+++|++++++.+.+++++|+..+|.+++.+|+.++..... .......+...+..++.++
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~ 240 (260)
T PRK07657 161 LIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTK 240 (260)
T ss_pred HHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999999999999999999999999999999999999976543 3344456667778889999
Q ss_pred hHHHHHHHHhcCCCCCCCCC
Q 020093 308 EGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 308 d~~egi~aflekr~p~f~~~ 327 (331)
|++||+++|++||+|+|+++
T Consensus 241 ~~~e~~~af~~~r~~~~~~~ 260 (260)
T PRK07657 241 DRLEGLQAFKEKRKPMYKGE 260 (260)
T ss_pred hHHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999864
|
|
| >PRK06127 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=422.31 Aligned_cols=257 Identities=30% Similarity=0.471 Sum_probs=227.6
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh-
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE- 147 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~- 147 (331)
+.|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.|+++||+|+|++++.........
T Consensus 11 ~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 88 (269)
T PRK06127 11 GKLLAEK--TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAV 88 (269)
T ss_pred CceEEEE--ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHH
Confidence 4588888 8999999999999999999999999999999999999999999999986799999999987432111111
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHH
Q 020093 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (331)
Q Consensus 148 ~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~ 227 (331)
.........++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|+
T Consensus 89 ~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 168 (269)
T PRK06127 89 AAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAK 168 (269)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHHH
Confidence 11111234577889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCC
Q 020093 228 EMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGT 306 (331)
Q Consensus 228 ~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s 306 (331)
+|+++|++++|+||+++||||+|||++++++++.++|++++..+|.+++.+|+.++..... .....+.+...+..++.+
T Consensus 169 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~ 248 (269)
T PRK06127 169 DLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLRAAKRAIAELLKDEPERDMAACQALVAACFDS 248 (269)
T ss_pred HHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999886543 333445566677778899
Q ss_pred hhHHHHHHHHhcCCCCCCCCC
Q 020093 307 EEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 307 ~d~~egi~aflekr~p~f~~~ 327 (331)
+|.+||+++|+|||+|+|+++
T Consensus 249 ~d~~e~~~af~ekr~p~~~~~ 269 (269)
T PRK06127 249 EDYREGRAAFMEKRKPVFKGR 269 (269)
T ss_pred hHHHHHHHHHhcCCCCCCCCC
Confidence 999999999999999999863
|
|
| >PRK08150 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-57 Score=418.43 Aligned_cols=252 Identities=26% Similarity=0.382 Sum_probs=222.7
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
+.|.+++ +++|++||||||+++|+||.+|+.+|.++++.++ +++|+|||||.| ++||+|+|++++..........
T Consensus 2 ~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 76 (255)
T PRK08150 2 SLVSYEL--DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEG-DHFCAGLDLSELRERDAGEGMH 76 (255)
T ss_pred ceEEEEe--eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCC-CceecCcCHHHHhhccchhHHH
Confidence 3578888 8999999999999999999999999999999997 789999999999 5999999999875321111111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
....+..++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++
T Consensus 77 -~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ 155 (255)
T PRK08150 77 -HSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTD 155 (255)
T ss_pred -HHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHH
Confidence 1123456778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCCh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~ 307 (331)
|+++|+.++|+||++|||||+|||++++.+++.+++++|+..+|.+++.+|++++..... .....+.+......++.++
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~ 235 (255)
T PRK08150 156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNFAVLNALPRIADMSADDGLFVESLMAAVAQSAP 235 (255)
T ss_pred HHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999999999999999999999999999999999999876543 2333445555666778899
Q ss_pred hHHHHHHHHhcCCCCCCCC
Q 020093 308 EGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 308 d~~egi~aflekr~p~f~~ 326 (331)
|++||+++|++||+|+|+.
T Consensus 236 d~~eg~~af~~kr~p~~~~ 254 (255)
T PRK08150 236 EAKERLRAFLEKKAAKVKP 254 (255)
T ss_pred HHHHHHHHHhccCCCCCCC
Confidence 9999999999999999964
|
|
| >PRK09674 enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-57 Score=418.43 Aligned_cols=253 Identities=29% Similarity=0.469 Sum_probs=226.7
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
..|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|.| ++||+|+|++++..... ...
T Consensus 2 ~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~--~~~ 76 (255)
T PRK09674 2 SELLVSR--QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNA-RFFAAGADLNEMAEKDL--AAT 76 (255)
T ss_pred ceEEEEe--ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CceecccChHhHhccch--hhh
Confidence 3577888 899999999999999999999999999999999999999999999999 69999999998653211 111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
. ......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.++++
T Consensus 77 ~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~ 155 (255)
T PRK09674 77 L-NDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQ 155 (255)
T ss_pred H-HHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 1 112345778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCCh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~ 307 (331)
|+++|+.++|+||+++||||+|||++++.+.+.+++++|+..||.+++.+|+.++...+. .....+.|...+..++.++
T Consensus 156 l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~ 235 (255)
T PRK09674 156 MVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALRAAKQALRQSQEVDLQAGLAQERQLFTLLAATE 235 (255)
T ss_pred HHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999999999999999999999999999999999999876543 3344566667777889999
Q ss_pred hHHHHHHHHhcCCCCCCCCC
Q 020093 308 EGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 308 d~~egi~aflekr~p~f~~~ 327 (331)
|++||+++|++||+|.|+++
T Consensus 236 ~~~e~i~af~~kr~p~~~~~ 255 (255)
T PRK09674 236 DRHEGISAFLEKRTPDFKGR 255 (255)
T ss_pred HHHHHHHHHhccCCCCCCCC
Confidence 99999999999999999763
|
|
| >PRK08140 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-57 Score=419.74 Aligned_cols=256 Identities=30% Similarity=0.432 Sum_probs=226.1
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
|+.|.++. +++|++||||||+++|+||.+|+.+|.+++++++ |+++++|||+|.| ++||+|+|++++.........
T Consensus 3 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 78 (262)
T PRK08140 3 YETILLAI--EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAG-RGFCAGQDLADRDVTPGGAMP 78 (262)
T ss_pred CceEEEEe--ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCC-CCcccCcChHHHhccccccch
Confidence 56788998 8999999999999999999999999999999999 9999999999999 699999999986432110001
Q ss_pred h---hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 148 N---FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 148 ~---~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
. .....+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~ 158 (262)
T PRK08140 79 DLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMA 158 (262)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHH
Confidence 1 0111123567789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHH
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIF 303 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~ 303 (331)
+|++|+++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++.+|+.++..... .....+.+...+..+
T Consensus 159 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~ 238 (262)
T PRK08140 159 RALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPTRGLALIKQAMNASATNTLDAQLDLERDLQREA 238 (262)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999976543 334445566677778
Q ss_pred hCChhHHHHHHHHhcCCCCCCCCC
Q 020093 304 YGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 304 ~~s~d~~egi~aflekr~p~f~~~ 327 (331)
+.++|++||+.+|++||+|.|+++
T Consensus 239 ~~~~~~~e~~~af~~kr~p~~~~~ 262 (262)
T PRK08140 239 GRSADYAEGVSAFLEKRAPRFTGR 262 (262)
T ss_pred hcChhHHHHHHHHhcCCCCCCCCC
Confidence 899999999999999999999763
|
|
| >PRK06144 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-57 Score=420.47 Aligned_cols=254 Identities=30% Similarity=0.411 Sum_probs=224.1
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
.+.|.+++ +++|++||||||+++|+||.+|+++|.+++++++.|+++++|||+|.|+++||+|+|++++.........
T Consensus 7 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~ 84 (262)
T PRK06144 7 TDELLLEV--RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDA 84 (262)
T ss_pred CCceEEEe--eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHH
Confidence 35688998 8999999999999999999999999999999999999999999999986699999999986432111110
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCC-ccCCCCchHHHHHHHhhCHHHH
Q 020093 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPK-VGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 148 ~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~-~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
......+..++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||++ +|++|++|++++|++++|..+|
T Consensus 85 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a 164 (262)
T PRK06144 85 VAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARV 164 (262)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHH
Confidence 111123456778899999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHhCC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGT 306 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~s 306 (331)
++++++|+.++|+||+++||||+|+|++++.+++.+++++|+..||.+++.+|+.++...+... ..+.+.+..++.+
T Consensus 165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~l---~~~~~~~~~~~~~ 241 (262)
T PRK06144 165 KDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLRATKEALRRLRREGL---PDGDDLIRMCYMS 241 (262)
T ss_pred HHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcCH---HHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999987654321 2233456677889
Q ss_pred hhHHHHHHHHhcCCCCCCCC
Q 020093 307 EEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 307 ~d~~egi~aflekr~p~f~~ 326 (331)
+|++||+++|++||+|+|++
T Consensus 242 ~~~~e~~~af~~kr~p~~~~ 261 (262)
T PRK06144 242 EDFREGVEAFLEKRPPKWKG 261 (262)
T ss_pred hHHHHHHHHHhcCCCCCCCC
Confidence 99999999999999999976
|
|
| >PRK06494 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=419.20 Aligned_cols=255 Identities=32% Similarity=0.406 Sum_probs=222.6
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
.|+.|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|+|+++||+|+||+++.......
T Consensus 2 ~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~- 78 (259)
T PRK06494 2 ALPFSTVER--KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG- 78 (259)
T ss_pred CCceeEEEe--ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch-
Confidence 356788998 89999999999999999999999999999999999999999999999867999999999864321111
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
.. ...+..+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|
T Consensus 79 ~~--~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a 155 (259)
T PRK06494 79 WP--ESGFGGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRA 155 (259)
T ss_pred hh--hHHHHHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHH
Confidence 00 1112233 34568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHH--HHHHHHH
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLG--GDATLIF 303 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~--~~~~~~~ 303 (331)
++|+++|+.++|+||+++||||+++|++++.+++.+++++|+..||.+++.+|+.++...+. .......+ ...+..+
T Consensus 156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~ 235 (259)
T PRK06494 156 MGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIRASKQAVYRGLEVSLEEAITAQRDYPAVEAR 235 (259)
T ss_pred HHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999976543 23333444 3345677
Q ss_pred hCChhHHHHHHHHhcCCCCCCCCC
Q 020093 304 YGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 304 ~~s~d~~egi~aflekr~p~f~~~ 327 (331)
+.++|++||+++|++||+|+|+++
T Consensus 236 ~~~~d~~eg~~af~~kr~p~~~~~ 259 (259)
T PRK06494 236 RASQDYIEGPKAFAEKRPPRWKGR 259 (259)
T ss_pred hcCccHHHHHHHHHccCCCCCCCC
Confidence 899999999999999999999763
|
|
| >TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-57 Score=418.85 Aligned_cols=252 Identities=29% Similarity=0.402 Sum_probs=223.2
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh--
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN-- 148 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~-- 148 (331)
|++++ +++|++||||||+++|+||.+|+.+|.+++++++.|+ +++|||||.| ++||+|+|++++..........
T Consensus 1 ~~~e~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~ 76 (256)
T TIGR02280 1 ILSAL--EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAG-RGFCAGQDLSERNPTPGGAPDLGR 76 (256)
T ss_pred CeEEE--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCC-CCcccCcCHHHHhhccccchhHHH
Confidence 45777 8999999999999999999999999999999999998 9999999999 6999999999875321111110
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
.....+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++
T Consensus 77 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~ 156 (256)
T TIGR02280 77 TIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMG 156 (256)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 00111235677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCCh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~ 307 (331)
|+++|++++|+||+++||||+|+|++++.+++.+++++|+..||.+++.+|+.++..... .......+...+..++.++
T Consensus 157 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~ 236 (256)
T TIGR02280 157 LAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGLALTKRAIQAAATNSLDTQLDLERDLQRELGRSA 236 (256)
T ss_pred HHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCh
Confidence 999999999999999999999999999999999999999999999999999999876543 3344456667778889999
Q ss_pred hHHHHHHHHhcCCCCCCCC
Q 020093 308 EGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 308 d~~egi~aflekr~p~f~~ 326 (331)
|++||+.+|++||+|+|++
T Consensus 237 d~~eg~~af~~kr~p~~~~ 255 (256)
T TIGR02280 237 DYAEGVTAFLDKRNPQFTG 255 (256)
T ss_pred hHHHHHHHHHcCCCCCCCC
Confidence 9999999999999999986
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). |
| >PRK07658 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-57 Score=418.40 Aligned_cols=255 Identities=28% Similarity=0.370 Sum_probs=226.6
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
+++.+++ +++|++||||||++ |+||.+|+++|.+++++++.|++|++|||+|.| ++||+|+|++++..........
T Consensus 2 ~~i~~~~--~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 77 (257)
T PRK07658 2 KFLSVRV--EDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEG-RFFSAGADIKEFTSVTEAEQAT 77 (257)
T ss_pred ceEEEEe--eCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhccCchhhHH
Confidence 3678888 89999999999986 999999999999999999999999999999999 6999999999874321111100
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
........++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++
T Consensus 78 ~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 157 (257)
T PRK07658 78 ELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALE 157 (257)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHH
Confidence 01112356788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHHHHHHhCCh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~s~ 307 (331)
|+++|++++++||+++||||+|+|++++.+++.+++++|++.+|.+++.+|++++...+ ......+.|...+..++.++
T Consensus 158 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~ 237 (257)
T PRK07658 158 MMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTSE 237 (257)
T ss_pred HHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999999999999999999999999999999999987654 23444566777788889999
Q ss_pred hHHHHHHHHhcCCCCCCCCC
Q 020093 308 EGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 308 d~~egi~aflekr~p~f~~~ 327 (331)
|.+||+++|++||+|+|+++
T Consensus 238 ~~~egi~af~~kr~p~~~~~ 257 (257)
T PRK07658 238 DAKEGVQAFLEKRKPSFSGK 257 (257)
T ss_pred HHHHHHHHHHcCCCCCCCCC
Confidence 99999999999999999863
|
|
| >PRK09245 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-57 Score=421.03 Aligned_cols=256 Identities=31% Similarity=0.419 Sum_probs=225.9
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc---
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRP-HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA--- 144 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~-~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~--- 144 (331)
+.|.+++ +++|++||||||+++|+||. +|+++|.+++++++.|++|++|||+|.| ++||+|+||+++......
T Consensus 3 ~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (266)
T PRK09245 3 DFLLVER--DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAG-TAFSSGGNVKDMRARVGAFGG 79 (266)
T ss_pred CceEEEE--ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCHHHHhhccccccc
Confidence 3588988 89999999999999999995 9999999999999999999999999999 699999999987431110
Q ss_pred chhh---hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhh
Q 020093 145 DYEN---FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221 (331)
Q Consensus 145 ~~~~---~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v 221 (331)
.... .....+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~v 159 (266)
T PRK09245 80 SPADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRII 159 (266)
T ss_pred cchhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHh
Confidence 0001 1111234677789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHH
Q 020093 222 GPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDAT 300 (331)
Q Consensus 222 G~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~ 300 (331)
|..+|++|+++|++++|+||+++||||+|+|++++++++.+++++|++.||.+++.+|+.++...+. .......+....
T Consensus 160 G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~ 239 (266)
T PRK09245 160 GMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANPPHALRLTKRLLREGQHASLDTLLELSAAYQ 239 (266)
T ss_pred hHHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999976543 333445566667
Q ss_pred HHHhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 301 LIFYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 301 ~~~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
..++.++|++||+++|++||+|.|+++
T Consensus 240 ~~~~~~~d~~eg~~af~~kr~p~~~~~ 266 (266)
T PRK09245 240 ALAHHTADHREAVDAFLEKRPPVFTGR 266 (266)
T ss_pred HHHhcCHhHHHHHHHHHcCCCCCCCCC
Confidence 778899999999999999999999763
|
|
| >PRK05995 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-57 Score=418.88 Aligned_cols=257 Identities=33% Similarity=0.492 Sum_probs=224.6
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc-
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD- 145 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~- 145 (331)
+|+++.++. +++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 2 ~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~ 78 (262)
T PRK05995 2 MYETLEIEQ--RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAG-KAFCAGADLNWMKKMAGYSD 78 (262)
T ss_pred CCceEEEEe--eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CccccCcCHHHHhhhcccCc
Confidence 356788998 899999999999999999999999999999999999999999999999 6999999999864311111
Q ss_pred hhhhh-hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 146 YENFG-RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 146 ~~~~~-~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
..... ...+.+++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++++ .+|++++|..
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~-~~l~~~vg~~ 157 (262)
T PRK05995 79 DENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATIS-PYVIRAMGER 157 (262)
T ss_pred hhhhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchH-HHHHHHhCHH
Confidence 11111 123456788899999999999999999999999999999999999999999999999998765 4589999999
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhH-HHHHHHHHHH
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGL-QTLGGDATLI 302 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~-~~~~~~~~~~ 302 (331)
+|++|+++|++|+|+||+++||||+|+|++++.+++.+++++|++.||.+++.+|+.++...+. .... .+.+...+..
T Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~ 237 (262)
T PRK05995 158 AARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQAVRAGKRLVRDVAGRPIDAALIADTASRIAL 237 (262)
T ss_pred HHHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876432 2222 4455566677
Q ss_pred HhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 303 FYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 303 ~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
++.++|++||+++|++||+|+|+++
T Consensus 238 ~~~~~d~~e~~~af~~kr~p~~~~~ 262 (262)
T PRK05995 238 IRATEEAREGVAAFLEKRKPAWRGR 262 (262)
T ss_pred HhcCHHHHHHHHHHhcCCCCCCCCC
Confidence 8899999999999999999999864
|
|
| >PRK08139 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-57 Score=418.89 Aligned_cols=256 Identities=32% Similarity=0.429 Sum_probs=225.1
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
...+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.| ++||+|+|++++.........
T Consensus 10 ~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~ 86 (266)
T PRK08139 10 APLLLRED--RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAG-KAFCAGHDLKEMRAARGLAYF 86 (266)
T ss_pred CCceEEEe--eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCC-CcceeccCHHHHhcccchhHH
Confidence 35688888 899999999999999999999999999999999999999999999999 699999999986532111100
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHH
Q 020093 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (331)
Q Consensus 148 ~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~ 227 (331)
......+.+++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+++ +++|+|++|..+|+
T Consensus 87 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~ 165 (266)
T PRK08139 87 RALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAM 165 (266)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHH
Confidence 00111235677889999999999999999999999999999999999999999999999998764 67899999999999
Q ss_pred HHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCC
Q 020093 228 EMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGT 306 (331)
Q Consensus 228 ~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s 306 (331)
+|+++|+.++|+||+++||||+|+|++++++.+.+++++|++.||.+++.+|+.++...+. .......+.+.+..++.+
T Consensus 166 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~ 245 (266)
T PRK08139 166 EMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAAVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMA 245 (266)
T ss_pred HHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999986543 234445566677778899
Q ss_pred hhHHHHHHHHhcCCCCCCCCC
Q 020093 307 EEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 307 ~d~~egi~aflekr~p~f~~~ 327 (331)
+|++||+++|++||+|+|.++
T Consensus 246 ~d~~eg~~af~~kr~p~~~~~ 266 (266)
T PRK08139 246 EDAEEGIDAFLEKRPPEWRGR 266 (266)
T ss_pred chHHHHHHHHhcCCCCCCCCC
Confidence 999999999999999999764
|
|
| >PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-57 Score=421.36 Aligned_cols=254 Identities=25% Similarity=0.339 Sum_probs=222.1
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc----c-
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA----D- 145 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~----~- 145 (331)
+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++...... .
T Consensus 10 ~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g-~~FcaG~Dl~~~~~~~~~~~~~~~ 86 (275)
T PLN02664 10 IQKSP--NSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAG-DHFCSGIDLKTLNSISEQSSSGDR 86 (275)
T ss_pred EEecC--CCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CceeeCcChHHhhhcccccccccc
Confidence 44555 899999999999999999999999999999999999999999999999 699999999987432110 0
Q ss_pred -h--hhhh--hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHh
Q 020093 146 -Y--ENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL 220 (331)
Q Consensus 146 -~--~~~~--~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~ 220 (331)
. .... ...+.+++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ 166 (275)
T PLN02664 87 GRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSI 166 (275)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHH
Confidence 0 0111 1123467778999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCHHHHHHHHHcCCCCCHHHHHhcCcccEecCC-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHH
Q 020093 221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPL-EKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGD 298 (331)
Q Consensus 221 vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~ 298 (331)
+|.++|++|+++|+.++|+||+++||||+|||+ +++.+.+.++|++|+..+|.+++.+|+.++...+. .....+.+..
T Consensus 167 vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~ 246 (275)
T PLN02664 167 VGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVTGTKAVLLRSRELSVEQGLDYVAT 246 (275)
T ss_pred hCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999999999999999999999999995 88999999999999999999999999999876543 3334455666
Q ss_pred HHHHHhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 299 ATLIFYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 299 ~~~~~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
.+..++.++|++||+++|++||+|.|+++
T Consensus 247 ~~~~~~~~~d~~eg~~af~ekr~p~~~~~ 275 (275)
T PLN02664 247 WNSAMLVSDDLNEAVSAQIQKRKPVFAKL 275 (275)
T ss_pred HHHHhccChhHHHHHHHHhccCCCCCCCC
Confidence 66777889999999999999999999864
|
|
| >PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-57 Score=418.29 Aligned_cols=257 Identities=30% Similarity=0.501 Sum_probs=222.4
Q ss_pred CcccEEEEEeeC-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc
Q 020093 67 EFTDIIYEKAVG-EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 67 ~~~~v~~~~~~~-~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~ 145 (331)
+|++|.+++ + ++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|.| ++||+|+|++++.......
T Consensus 3 ~~~~l~~~~--~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~ 79 (265)
T PRK05674 3 DFQTIELIR--DPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRG-RHFSAGADLAWMQQSADLD 79 (265)
T ss_pred CcceEEEEE--cCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhccccc
Confidence 478899988 5 78999999999999999999999999999999999999999999999 6999999999864321100
Q ss_pred h-hhh-hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCH
Q 020093 146 Y-ENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP 223 (331)
Q Consensus 146 ~-~~~-~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 223 (331)
. ... ....+..++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|+++++ +|++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~ 158 (265)
T PRK05674 80 YNTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGE 158 (265)
T ss_pred chhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCH
Confidence 0 011 11124567888999999999999999999999999999999999999999999999999987654 58999999
Q ss_pred HHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCc-hhHHH-HHHHHHH
Q 020093 224 KKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH-AGLQT-LGGDATL 301 (331)
Q Consensus 224 ~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~-~~~~~-~~~~~~~ 301 (331)
.+|++|+++|+.|+|+||+++||||+|+|+++|.+++.+++++|+..||.+++.+|+.++...+.. ..... .+...+.
T Consensus 159 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~ 238 (265)
T PRK05674 159 RAARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNSPQALRASKDLLREVGDGELSPALRRYCENAIA 238 (265)
T ss_pred HHHHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999875432 22222 2334556
Q ss_pred HHhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 302 IFYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 302 ~~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
.++.++|.+||+++|++||+|+|++.
T Consensus 239 ~~~~s~d~~e~~~af~~kr~p~~~~~ 264 (265)
T PRK05674 239 RIRVSAEGQEGLRAFLEKRTPAWQTD 264 (265)
T ss_pred HHhcCHHHHHHHHHHHccCCCCCCCC
Confidence 67889999999999999999999764
|
|
| >PRK07327 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-57 Score=418.60 Aligned_cols=260 Identities=26% Similarity=0.347 Sum_probs=222.0
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~ 144 (331)
...|+.|.+++. +++|++||||||+++|+||.+|+.+|.++|++++.|++|++|||||.| ++||+|+||+++......
T Consensus 7 ~~~~~~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~ 84 (268)
T PRK07327 7 YADYPALRFDRP-PPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEG-KAFSAGGDLALVEEMADD 84 (268)
T ss_pred CCCCCeEEEEec-CCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCC-CCcccccCHHHHhhccCc
Confidence 345678989872 478999999999999999999999999999999999999999999999 699999999976432111
Q ss_pred chhhh-hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCH
Q 020093 145 DYENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP 223 (331)
Q Consensus 145 ~~~~~-~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 223 (331)
..... .......++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 164 (268)
T PRK07327 85 FEVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGM 164 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCH
Confidence 11011 11123467788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHH
Q 020093 224 KKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIF 303 (331)
Q Consensus 224 ~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~ 303 (331)
.+|++|+++|++++|+||+++||||+++|++++++++.++|++|++.||.+++.+|+.++...+......+.........
T Consensus 165 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~ 244 (268)
T PRK07327 165 AKAKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGSQTAIRWTKYALNNWLRMAGPTFDTSLALEFMG 244 (268)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999865322111111111112246
Q ss_pred hCChhHHHHHHHHhcCCCCCCCC
Q 020093 304 YGTEEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 304 ~~s~d~~egi~aflekr~p~f~~ 326 (331)
+.++|++||+++|++||+|+|++
T Consensus 245 ~~~~d~~eg~~af~ekr~p~~~~ 267 (268)
T PRK07327 245 FSGPDVREGLASLREKRAPDFPG 267 (268)
T ss_pred ccChhHHHHHHHHHhcCCCCCCC
Confidence 78999999999999999999986
|
|
| >PRK08252 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-57 Score=415.25 Aligned_cols=251 Identities=30% Similarity=0.417 Sum_probs=221.2
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
+.|.+++ +++|++||||||+++|+||.+|+.+|.+++++++.|++|++|||+|.| ++||+|+|++++..... . .
T Consensus 3 ~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~--~-~ 76 (254)
T PRK08252 3 DEVLVER--RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAG-GTFCAGMDLKAFARGER--P-S 76 (254)
T ss_pred ceEEEEE--ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CceEcCcCHHHHhcccc--h-h
Confidence 4588888 899999999999999999999999999999999999999999999999 69999999998753211 1 1
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
.....+..+. ...+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++
T Consensus 77 ~~~~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~ 154 (254)
T PRK08252 77 IPGRGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAME 154 (254)
T ss_pred hhHHHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHH
Confidence 1111111222 24799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCCh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~ 307 (331)
|+++|++++|+||+++||||+|||++++.+++.+++++|+..||.+++.+|+.++...+. .....+.+...+..++.++
T Consensus 155 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~ 234 (254)
T PRK08252 155 LALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVAASKRIVVESGDWSEDEMFARQRELIAPVFTSA 234 (254)
T ss_pred HHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999999976543 3334455666677788999
Q ss_pred hHHHHHHHHhcCCCCCCCCC
Q 020093 308 EGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 308 d~~egi~aflekr~p~f~~~ 327 (331)
|++||+++|++||+|+|.++
T Consensus 235 ~~~eg~~af~~kr~p~~~~~ 254 (254)
T PRK08252 235 DAKEGATAFAEKRAPVWTGK 254 (254)
T ss_pred hHHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999763
|
|
| >PRK08258 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-57 Score=419.52 Aligned_cols=255 Identities=29% Similarity=0.390 Sum_probs=226.2
Q ss_pred cEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCC-Ccchhh
Q 020093 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG-YADYEN 148 (331)
Q Consensus 70 ~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~-~~~~~~ 148 (331)
.+.+++ +++|++||||||+++|+|+.+|+.+|.++|++++.|+++++|||+|.| ++||+|+|++++.... ......
T Consensus 18 ~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g-~~FsaG~Dl~~~~~~~~~~~~~~ 94 (277)
T PRK08258 18 HFLWEV--DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAG-GNFCSGGDVHEIIGPLTKMDMPE 94 (277)
T ss_pred ceEEEE--ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCC-CCcccccCHHHHhccccccChhH
Confidence 688998 899999999999999999999999999999999999999999999999 6999999999864211 001111
Q ss_pred hh--hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCC-CchHHHHHHHhhCHHH
Q 020093 149 FG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFD-AGYGSSIMSRLVGPKK 225 (331)
Q Consensus 149 ~~--~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p-~~g~~~~L~r~vG~~~ 225 (331)
.. ...+.+++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++|..+
T Consensus 95 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~ 174 (277)
T PRK08258 95 LLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGR 174 (277)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHH
Confidence 11 11234678889999999999999999999999999999999999999999999999985 6788999999999999
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHh
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFY 304 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~ 304 (331)
|++|+++|++++|+||+++||||+|+|++++++++.+++++|+..||.+++.+|+.++...+. .....+.+...+..++
T Consensus 175 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~ 254 (277)
T PRK08258 175 ASELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGPTFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICM 254 (277)
T ss_pred HHHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999986543 3444566677778889
Q ss_pred CChhHHHHHHHHhcCCCCCCCCC
Q 020093 305 GTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 305 ~s~d~~egi~aflekr~p~f~~~ 327 (331)
.++|++||+++|+|||+|+|+++
T Consensus 255 ~s~d~~eg~~af~ekr~p~~~~~ 277 (277)
T PRK08258 255 QTEDFRRAYEAFVAKRKPVFEGD 277 (277)
T ss_pred cCchHHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999999763
|
|
| >PRK08321 naphthoate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-57 Score=422.24 Aligned_cols=273 Identities=54% Similarity=0.919 Sum_probs=232.2
Q ss_pred cchhhhcccCCCCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCC------C
Q 020093 54 DVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT------E 127 (331)
Q Consensus 54 ~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~------~ 127 (331)
+..|..+. .-.|.+|.++++.+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.|+ +
T Consensus 11 ~~~~~~~~---~~~~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~ 87 (302)
T PRK08321 11 PDLWRPVP---GFDFTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGW 87 (302)
T ss_pred cccccCcC---CCCceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCC
Confidence 45677332 23577888887546889999999999999999999999999999999999999999999983 5
Q ss_pred ceeccccccchhcCCC----cc--h--h--hhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEe-CCc
Q 020093 128 AFCSGGDQALRTRDGY----AD--Y--E--NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNA 196 (331)
Q Consensus 128 ~FcaG~Dl~~~~~~~~----~~--~--~--~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~-~~a 196 (331)
+||+|+|++++..... .. . . ........++...+..+||||||+|||+|+|||++|+++||+|||+ +++
T Consensus 88 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a 167 (302)
T PRK08321 88 AFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHA 167 (302)
T ss_pred eeecCcChhhhccccccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCC
Confidence 9999999987532110 00 0 0 0001112346677889999999999999999999999999999999 699
Q ss_pred eeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHH
Q 020093 197 IFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIR 276 (331)
Q Consensus 197 ~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~ 276 (331)
+|++||+++|++|+++++++|+|++|..+|++|+++|+.++|+||+++||||++||++++.+++.+++++|++.+|.+++
T Consensus 168 ~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~ 247 (302)
T PRK08321 168 RFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMR 247 (302)
T ss_pred EEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccccCchhHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCCCCCCC
Q 020093 277 VLKSALNAVDDGHAGLQTLGGDATLIFYGTEEGSEGKTAFVERRRPDFLKFPR 329 (331)
Q Consensus 277 ~~K~~l~~~~~~~~~~~~~~~~~~~~~~~s~d~~egi~aflekr~p~f~~~~~ 329 (331)
.+|++++............+...+..++.++|.+||+.+|++||+|.|.++|+
T Consensus 248 ~~K~~l~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~~~~~~ 300 (302)
T PRK08321 248 MLKYAFNLTDDGLVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDWSDFPW 300 (302)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCCCCC
Confidence 99999987654333333345566777889999999999999999999998864
|
|
| >PRK05981 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-57 Score=416.74 Aligned_cols=257 Identities=27% Similarity=0.389 Sum_probs=227.2
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCC-CeeEEEEEeCCCCceeccccccchhcCCCcc
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDS-SVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~-~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~ 145 (331)
+|+.+.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+ ++++|||+|.| ++||+|+|++++.......
T Consensus 2 ~~~~v~~~~--~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g-~~F~aG~Dl~~~~~~~~~~ 78 (266)
T PRK05981 2 QFKKVTLDF--DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG-RGFCTGANLQGRGSGGRES 78 (266)
T ss_pred CcceEEEEe--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CCcccccCHHhhhcccccc
Confidence 467789998 8999999999999999999999999999999999876 59999999999 6999999999874321100
Q ss_pred ----h-hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHh
Q 020093 146 ----Y-ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL 220 (331)
Q Consensus 146 ----~-~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~ 220 (331)
. .......+..++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~ 158 (266)
T PRK05981 79 DSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRL 158 (266)
T ss_pred cccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHH
Confidence 0 00111124567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHH
Q 020093 221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDA 299 (331)
Q Consensus 221 vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~ 299 (331)
+|+.+|++|+++|++++|+||+++||||+++|++++.+++.+++++|+..||.+++.+|++++...+. .....+.+...
T Consensus 159 vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~ 238 (266)
T PRK05981 159 VGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVALGLIRKLYWDSPENDFEEQLNLEREA 238 (266)
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999876432 33444556666
Q ss_pred HHHHhCChhHHHHHHHHhcCCCCCCCC
Q 020093 300 TLIFYGTEEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 300 ~~~~~~s~d~~egi~aflekr~p~f~~ 326 (331)
+..++.++|.+||+.+|+|||+|.|++
T Consensus 239 ~~~~~~s~d~~e~~~af~~kr~~~~~~ 265 (266)
T PRK05981 239 QRIAGKTEDFKEGVGAFLQKRPAQFKG 265 (266)
T ss_pred HHHHhcChhHHHHHHHHhcCCCCCCCC
Confidence 777889999999999999999999976
|
|
| >PRK07659 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-57 Score=415.87 Aligned_cols=256 Identities=23% Similarity=0.340 Sum_probs=226.1
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
++++|.++. +++|++||||||+++|++|.+|+.+|.++++++ .|+++++|||+|.| ++||+|+|++++........
T Consensus 4 ~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 79 (260)
T PRK07659 4 KMESVVVKY--EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNG-RGFSAGGDIKMMLSSNDESK 79 (260)
T ss_pred CCceEEEEe--eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCC-CCcccccCHHHHhhccCchh
Confidence 446799998 899999999999999999999999999999999 58899999999999 69999999998753211111
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
.......+.+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a 159 (260)
T PRK07659 80 FDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKA 159 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHH
Confidence 11111234567788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYG 305 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~ 305 (331)
++|+++|+.++|+||+++||||++| ++++.+++.+++++|++.||.+++.+|+.++...+. .....+.+...+..++.
T Consensus 160 ~~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~ 238 (260)
T PRK07659 160 KQIIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKPLKAMIETKQIYCELNRSQLEQVLQLEKRAQYAMRQ 238 (260)
T ss_pred HHHHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999 789999999999999999999999999999876443 33445566667778889
Q ss_pred ChhHHHHHHHHhcCCCCCCCCC
Q 020093 306 TEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 306 s~d~~egi~aflekr~p~f~~~ 327 (331)
++|++||+++|++||+|+|+++
T Consensus 239 ~~~~~egi~af~~kr~p~~~~~ 260 (260)
T PRK07659 239 TADHKEGIRAFLEKRLPVFKGE 260 (260)
T ss_pred CHhHHHHHHHHhcCCCCCCCCC
Confidence 9999999999999999999763
|
|
| >PRK07468 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-57 Score=415.09 Aligned_cols=255 Identities=31% Similarity=0.487 Sum_probs=222.8
Q ss_pred cccEEEEEeeC-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC-cc
Q 020093 68 FTDIIYEKAVG-EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-AD 145 (331)
Q Consensus 68 ~~~v~~~~~~~-~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~-~~ 145 (331)
|+.+.+++ + ++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... ..
T Consensus 3 ~~~~~~~~--~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~ 79 (262)
T PRK07468 3 FETIRIAV--DARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAG-KSFCAGGDLGWMRAQMTADR 79 (262)
T ss_pred cceEEEEE--cCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CcccCCcCHHHHHhhcccch
Confidence 45688887 5 68999999999999999999999999999999999999999999999 69999999998642111 11
Q ss_pred hhhh-hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 146 YENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 146 ~~~~-~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
.... ....+..++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++ +++|..
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~ 158 (262)
T PRK07468 80 ATRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEA 158 (262)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHH
Confidence 1111 11224567788999999999999999999999999999999999999999999999999999888755 559999
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCc-hhHHHHHHHHHHHH
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH-AGLQTLGGDATLIF 303 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~-~~~~~~~~~~~~~~ 303 (331)
+|++|+++|++++|+||+++||||+|+|.+++.+.+.+++++|++.+|.+++.+|++++...... ....+.|...+..+
T Consensus 159 ~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~ 238 (262)
T PRK07468 159 NARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAVAAAKALVRALGAPIDEAVIDATIEALADT 238 (262)
T ss_pred HHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhccChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998764332 34455666677788
Q ss_pred hCChhHHHHHHHHhcCCCCCCCC
Q 020093 304 YGTEEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 304 ~~s~d~~egi~aflekr~p~f~~ 326 (331)
+.++|++||+++|++||+|+|++
T Consensus 239 ~~s~d~~e~~~af~~kr~~~~~~ 261 (262)
T PRK07468 239 WETEEAREGIAAFFDKRAPAWRG 261 (262)
T ss_pred hcCHHHHHHHHHHHcCCCCCCCC
Confidence 99999999999999999999975
|
|
| >PRK11423 methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-57 Score=414.87 Aligned_cols=256 Identities=30% Similarity=0.415 Sum_probs=225.6
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCC-CCceeccccccchhcCCCcc
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG-TEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g-~~~FcaG~Dl~~~~~~~~~~ 145 (331)
+|+.+.++. +++|++||||||+++|+||.+|+.+|.++++++++|+ +++|||+|.| +++||+|+|++++..... .
T Consensus 2 ~~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~-~ 77 (261)
T PRK11423 2 SMQYVNVVT--INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGR-D 77 (261)
T ss_pred CccceEEEe--ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccc-c
Confidence 356789998 8999999999999999999999999999999999887 9999999974 479999999998643211 1
Q ss_pred hhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHH
Q 020093 146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (331)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 225 (331)
.... ...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+
T Consensus 78 ~~~~-~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~ 156 (261)
T PRK11423 78 PLSY-DDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHI 156 (261)
T ss_pred HHHH-HHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHH
Confidence 1111 123456788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc-C-c-hhHHHHHHHHHHH
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD-G-H-AGLQTLGGDATLI 302 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~-~-~~~~~~~~~~~~~ 302 (331)
|++|+++|++++|+||+++||||+|||++++++.+.+++++|++.+|.+++.+|+.++.... . . ....+.+......
T Consensus 157 a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (261)
T PRK11423 157 VKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEQLRVLGEAHPMNPDEFERIQGLRRA 236 (261)
T ss_pred HHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999986542 1 1 2344555566678
Q ss_pred HhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 303 FYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 303 ~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
++.++|++||+.+|++||+|+|+++
T Consensus 237 ~~~s~d~~eg~~af~~kr~p~~~~~ 261 (261)
T PRK11423 237 VYDSEDYQEGMNAFLEKRKPVFVGH 261 (261)
T ss_pred HhCChhHHHHHHHHhccCCCCCCCC
Confidence 8899999999999999999999763
|
|
| >PRK08138 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=413.38 Aligned_cols=253 Identities=32% Similarity=0.474 Sum_probs=225.4
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
+.+.++.. +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++..... ...
T Consensus 7 ~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~--~~~ 82 (261)
T PRK08138 7 DVVLLERP-ADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGE-KVFAAGADIKEFATAGA--IEM 82 (261)
T ss_pred CCEEEEEc-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CCeeCCcCHHHHhccch--hHH
Confidence 45777763 688999999999999999999999999999999999999999999998 59999999998753211 111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
.......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..++++
T Consensus 83 -~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 161 (261)
T PRK08138 83 -YLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMR 161 (261)
T ss_pred -HHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHH
Confidence 1122456778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCCh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~ 307 (331)
|+++|+.++++||+++||||+|||++++.+++.+++++|++.+|.+++.+|+.++..... .......|.+.+..++.++
T Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~ 241 (261)
T PRK08138 162 MALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPLALAQIKEVVLAGADAPLDAALALERKAFQLLFDSE 241 (261)
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999999999999999999999999999999999999876543 3344455666777888999
Q ss_pred hHHHHHHHHhcCCCCCCCC
Q 020093 308 EGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 308 d~~egi~aflekr~p~f~~ 326 (331)
|++|++++|++||+|+|++
T Consensus 242 ~~~~~i~af~~kr~~~~~~ 260 (261)
T PRK08138 242 DQKEGMDAFLEKRKPAYKG 260 (261)
T ss_pred HHHHHHHHHhcCCCCCCCC
Confidence 9999999999999999976
|
|
| >PRK08260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=421.16 Aligned_cols=257 Identities=32% Similarity=0.450 Sum_probs=224.4
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcC-CCc--
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRD-GYA-- 144 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~-~~~-- 144 (331)
|++|.+++ +++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.| ++||+|+|++++... ...
T Consensus 3 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (296)
T PRK08260 3 YETIRYDV--ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAG-RAFCAGADLSAGGNTFDLDAP 79 (296)
T ss_pred cceEEEee--eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CCeecCcChHHhhhccccccc
Confidence 56788998 899999999999999999999999999999999999999999999999 699999999986421 000
Q ss_pred ------------ch-hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCc
Q 020093 145 ------------DY-ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAG 211 (331)
Q Consensus 145 ------------~~-~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~ 211 (331)
.. ..........++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~ 159 (296)
T PRK08260 80 RTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEA 159 (296)
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCc
Confidence 00 00011113457778999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhcc-CHHHHHHHHHHHHcccc--C
Q 020093 212 YGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRN-SPTAIRVLKSALNAVDD--G 288 (331)
Q Consensus 212 g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~-~~~a~~~~K~~l~~~~~--~ 288 (331)
|++++|++++|..+|++|+++|++++|+||+++||||+|||++++.+++.+++++|+.. +|.+++.+|++++.... .
T Consensus 160 g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~~~~K~~l~~~~~~~~ 239 (296)
T PRK08260 160 ASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVSVALTRQMMWRMAGADH 239 (296)
T ss_pred chhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999995 99999999999997642 1
Q ss_pred chhHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 289 HAGLQTLGGDATLIFYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 289 ~~~~~~~~~~~~~~~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
.......+...+..++.++|++||+++|++||+|+|+++
T Consensus 240 ~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~~ 278 (296)
T PRK08260 240 PMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPGK 278 (296)
T ss_pred cHHHHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCCC
Confidence 222223455566777889999999999999999999875
|
|
| >PRK06210 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-57 Score=417.02 Aligned_cols=258 Identities=33% Similarity=0.472 Sum_probs=226.5
Q ss_pred CcccEEEEEeeCC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc
Q 020093 67 EFTDIIYEKAVGE-GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 67 ~~~~v~~~~~~~~-~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~ 145 (331)
.|+.|.+++ ++ +|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.| ++||+|+|++++.......
T Consensus 3 ~~~~i~~~~--~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~ 79 (272)
T PRK06210 3 AYDAVLYEV--ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAG-RGFCAGADMGELQTIDPSD 79 (272)
T ss_pred CcceEEEEE--CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCC-CCcccccCHHHHhccCccc
Confidence 457799998 88 9999999999999999999999999999999999999999999999 6999999999864321110
Q ss_pred hh------hhhh---hhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHH
Q 020093 146 YE------NFGR---LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI 216 (331)
Q Consensus 146 ~~------~~~~---~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~ 216 (331)
.. .... ..+++++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~ 159 (272)
T PRK06210 80 GRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWI 159 (272)
T ss_pred ccccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhh
Confidence 00 0000 11245567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhcc-CHHHHHHHHHHHHccccC-chhHHH
Q 020093 217 MSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRN-SPTAIRVLKSALNAVDDG-HAGLQT 294 (331)
Q Consensus 217 L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~-~~~a~~~~K~~l~~~~~~-~~~~~~ 294 (331)
|++++|+.++++|+++|+.++|+||+++||||+++|++++.+++.+++++|+.. +|.++..+|+.++..... .....+
T Consensus 160 l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~a~~~~K~~l~~~~~~~l~~~~~ 239 (272)
T PRK06210 160 LPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPASMAVIKRQLYEDAFQTLAEATA 239 (272)
T ss_pred hHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999985 999999999999976443 233445
Q ss_pred HHHHHHHHHhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 295 LGGDATLIFYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 295 ~~~~~~~~~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
.+...+..++.++|.+||+++|++||+|.|.++
T Consensus 240 ~e~~~~~~~~~~~~~~egi~af~~kr~p~~~~~ 272 (272)
T PRK06210 240 RANREMHESLQRPDFIEGVASFLEKRPPRFPGL 272 (272)
T ss_pred HHHHHHHHHhcCccHHHHHHHHhccCCCCCCCC
Confidence 566667778899999999999999999999763
|
|
| >PRK03580 carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-56 Score=412.07 Aligned_cols=252 Identities=30% Similarity=0.408 Sum_probs=220.7
Q ss_pred cEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhh
Q 020093 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (331)
Q Consensus 70 ~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (331)
.|.+++ +++|++||||||+ .|+||.+|+.+|.++++.++.|++|++|||+|.|+++||+|+|++++....... ...
T Consensus 4 ~i~~~~--~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-~~~ 79 (261)
T PRK03580 4 SLHTTR--NGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-ADF 79 (261)
T ss_pred eEEEEE--ECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch-hhh
Confidence 488888 8999999999996 599999999999999999999999999999999967999999999875321111 111
Q ss_pred hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHH
Q 020093 150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREM 229 (331)
Q Consensus 150 ~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l 229 (331)
......++..+..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|+.+|+++
T Consensus 80 -~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l 158 (261)
T PRK03580 80 -GPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEM 158 (261)
T ss_pred -hhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHH
Confidence 1112345678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHH----HHHHHHh
Q 020093 230 WFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGG----DATLIFY 304 (331)
Q Consensus 230 ~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~----~~~~~~~ 304 (331)
+++|+.++|+||+++||||+|+|++++.+++.+++++|+..+|.+++.+|+.++..... .....+.+. ..+..++
T Consensus 159 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~ 238 (261)
T PRK03580 159 VMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVL 238 (261)
T ss_pred HHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999876543 222223332 2456678
Q ss_pred CChhHHHHHHHHhcCCCCCCCC
Q 020093 305 GTEEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 305 ~s~d~~egi~aflekr~p~f~~ 326 (331)
.++|++||+++|+|||+|+|++
T Consensus 239 ~~~d~~e~~~af~ekr~~~~~~ 260 (261)
T PRK03580 239 HSEDALEGPRAFAEKRDPVWKG 260 (261)
T ss_pred cCccHHHHHHHHhcCCCCCCCC
Confidence 9999999999999999999976
|
|
| >PRK12478 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=420.63 Aligned_cols=257 Identities=30% Similarity=0.418 Sum_probs=219.9
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccc-hhc---CC-
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQAL-RTR---DG- 142 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~-~~~---~~- 142 (331)
|++|.+++ +++|++||||||+++|+||.+|+.+|.++|++++.|++||+|||||+| ++||+|+||++ +.. ..
T Consensus 4 ~~~v~~~~--~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G-~~FcaG~Dl~~~~~~~~~~~~ 80 (298)
T PRK12478 4 FQTLLYTT--AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAG-RAFSGGYDFGGGFQHWGEAMM 80 (298)
T ss_pred ceEEEEec--cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccCcCccccccccchhcc
Confidence 56788988 999999999999999999999999999999999999999999999999 69999999986 211 00
Q ss_pred -Cc--c-hhhh-----hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCc-cCCCCch
Q 020093 143 -YA--D-YENF-----GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV-GSFDAGY 212 (331)
Q Consensus 143 -~~--~-~~~~-----~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~-Gl~p~~g 212 (331)
.. . .... .......++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++ |++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~-- 158 (298)
T PRK12478 81 TDGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLT-- 158 (298)
T ss_pred cccccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCch--
Confidence 00 0 0111 00011235667899999999999999999999999999999999999999999997 87752
Q ss_pred HHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc--Cch
Q 020093 213 GSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD--GHA 290 (331)
Q Consensus 213 ~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~--~~~ 290 (331)
+++ .+++|..+|++|+++|++|+|+||+++||||+|||+++|++++.++|++|+..||.+++.+|++++...+ ...
T Consensus 159 ~~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~l~ 236 (298)
T PRK12478 159 GMW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQAQKLIVNQAYENMGLA 236 (298)
T ss_pred hHH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcchh
Confidence 333 3569999999999999999999999999999999999999999999999999999999999999998654 244
Q ss_pred hHHHHHHHHHHHHhCChhHH--------HHHHHHhcCCCCCCCCCCCCC
Q 020093 291 GLQTLGGDATLIFYGTEEGS--------EGKTAFVERRRPDFLKFPRRP 331 (331)
Q Consensus 291 ~~~~~~~~~~~~~~~s~d~~--------egi~aflekr~p~f~~~~~~~ 331 (331)
...+.+...+..++.++|++ ||++||+|||+|+|.++.++|
T Consensus 237 ~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~~~~~~~ 285 (298)
T PRK12478 237 STQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFGDYSQAP 285 (298)
T ss_pred HHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCcccccCcCC
Confidence 55567777788889999997 599999999999999997765
|
|
| >PRK06143 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-56 Score=410.44 Aligned_cols=250 Identities=28% Similarity=0.364 Sum_probs=219.7
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
.++.++.. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.|+++||+|+|++++..........
T Consensus 6 ~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 84 (256)
T PRK06143 6 AHAGVTRD-DRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEA 84 (256)
T ss_pred ccceeeec-CCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHH
Confidence 45677752 68999999999999999999999999999999999999999999999966999999999875321111111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
....+..++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ |+++++++|++++|..+|++
T Consensus 85 -~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~ 162 (256)
T PRK06143 85 -FISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWARTRW 162 (256)
T ss_pred -HHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHHHHH
Confidence 1123456788899999999999999999999999999999999999999999999997 77888999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCCh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~ 307 (331)
++++|+.++|+||+++||||+|||++++.+++.+++++|+..||.+++.+|+.++...+. .......+...+..++.++
T Consensus 163 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~ 242 (256)
T PRK06143 163 LLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTG 242 (256)
T ss_pred HHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcCh
Confidence 999999999999999999999999999999999999999999999999999999986543 3344455666677788999
Q ss_pred hHHHHHHHHhcCCC
Q 020093 308 EGSEGKTAFVERRR 321 (331)
Q Consensus 308 d~~egi~aflekr~ 321 (331)
|++||+++|+|||+
T Consensus 243 d~~e~~~af~ekr~ 256 (256)
T PRK06143 243 EPQRHMAAFLNRKR 256 (256)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999999985
|
|
| >PRK05864 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-56 Score=414.29 Aligned_cols=260 Identities=29% Similarity=0.346 Sum_probs=220.5
Q ss_pred CCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc-
Q 020093 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA- 144 (331)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~- 144 (331)
.+++.|.++.. +++|++||||||+++|+||.+|+.+|.+++++++.|++||+|||+|.| ++||+|+|++++......
T Consensus 6 ~~~~~v~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~~~ 83 (276)
T PRK05864 6 STMSLVLVDHP-RPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAG-RGFSSGADHKSAGVVPHVE 83 (276)
T ss_pred CCCCceEEeee-cCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcchhhhhcccccc
Confidence 34566778752 688999999999999999999999999999999999999999999999 699999999986421100
Q ss_pred ---chhh-h-hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCC-CchHHHHHH
Q 020093 145 ---DYEN-F-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFD-AGYGSSIMS 218 (331)
Q Consensus 145 ---~~~~-~-~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p-~~g~~~~L~ 218 (331)
.... . ....+..++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~ 163 (276)
T PRK05864 84 GLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLP 163 (276)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehH
Confidence 0000 0 011234567788999999999999999999999999999999999999999999999997 678889999
Q ss_pred HhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC--chhHHHHH
Q 020093 219 RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG--HAGLQTLG 296 (331)
Q Consensus 219 r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~--~~~~~~~~ 296 (331)
+++|..+|++|+++|++++|+||+++||||+|+|++++++++.++|++|+..||.+++.+|+.++...+. .......+
T Consensus 164 ~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e 243 (276)
T PRK05864 164 RAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAE 243 (276)
T ss_pred hhhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999875442 22222333
Q ss_pred HHH-HHHHhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 297 GDA-TLIFYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 297 ~~~-~~~~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
... ....+.++|++||+++|++||+|+|++.
T Consensus 244 ~~~~~~~~~~~~d~~e~~~af~~kr~p~~~~~ 275 (276)
T PRK05864 244 GLGQLFVRLLTANFEEAVAARAEKRPPVFTDD 275 (276)
T ss_pred HHHHHHHhccChhHHHHHHHHhccCCCCCCCC
Confidence 321 1224679999999999999999999864
|
|
| >PRK07511 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-56 Score=409.82 Aligned_cols=254 Identities=28% Similarity=0.411 Sum_probs=226.5
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
.++.+++ +++|++||||||+++|+||.+|+.+|.+++++++.|++||+|||+|.| ++||+|+|++++..........
T Consensus 3 ~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g-~~F~~G~Dl~~~~~~~~~~~~~ 79 (260)
T PRK07511 3 AELLSRR--EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAG-GFFCAGGNLNRLLENRAKPPSV 79 (260)
T ss_pred CeeEEEe--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCC-CCcccCcCHHHHhhcccccchh
Confidence 3478888 899999999999999999999999999999999999999999999999 6999999999875321101111
Q ss_pred h--hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 149 F--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 149 ~--~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
. ....+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.+++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a 159 (260)
T PRK07511 80 QAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLA 159 (260)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHH
Confidence 1 11234577888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYG 305 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~ 305 (331)
++|+++|++++++||+++||||+||+++++.+++.+++++|++.+|.+++.+|+.++...+. .....+.|...+..++.
T Consensus 160 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~ 239 (260)
T PRK07511 160 TELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPNALARIKSLIADAPEATLAAQLEAERDHFVASLH 239 (260)
T ss_pred HHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999876543 33445666677788889
Q ss_pred ChhHHHHHHHHhcCCCCCCC
Q 020093 306 TEEGSEGKTAFVERRRPDFL 325 (331)
Q Consensus 306 s~d~~egi~aflekr~p~f~ 325 (331)
++|++|++++|++||+|.|+
T Consensus 240 ~~~~~~~i~~f~~~r~~~~~ 259 (260)
T PRK07511 240 HADALEGIAAFLEKRAPDYK 259 (260)
T ss_pred CchHHHHHHHHhccCCCCCC
Confidence 99999999999999999995
|
|
| >PRK06495 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-56 Score=409.44 Aligned_cols=254 Identities=31% Similarity=0.424 Sum_probs=222.4
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
+|+.|.+++ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++........
T Consensus 2 ~~~~i~~~~--~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~~ 77 (257)
T PRK06495 2 MMSQLKLEV--SDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAG-KVFCAGADLKGRPDVIKGPG 77 (257)
T ss_pred CcceEEEEe--eCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCcccCcCHHhHhhccCCch
Confidence 467788998 8999999999998 5999999999999999999999999999999999 69999999998743211111
Q ss_pred hhh-hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHH
Q 020093 147 ENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (331)
Q Consensus 147 ~~~-~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 225 (331)
... ......+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+. |++++|++++|..+
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~ 154 (257)
T PRK06495 78 DLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSL 154 (257)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHH
Confidence 111 11223567788999999999999999999999999999999999999999999999986 45788999999999
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHh
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFY 304 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~ 304 (331)
|++|+++|+.++|+||+++||||++||++++.+.+.+++++|++.||.+++.+|+.++...+. .....+.+...+..++
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~ 234 (257)
T PRK06495 155 TRRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLATRLAKDALNTIENMSLRDGYRYEQDITAKLA 234 (257)
T ss_pred HHHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999976543 3344455666677788
Q ss_pred CChhHHHHHHHHhcCCCCCCCCC
Q 020093 305 GTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 305 ~s~d~~egi~aflekr~p~f~~~ 327 (331)
.++|++||+++|++||+|.|+++
T Consensus 235 ~s~d~~egi~af~~kr~p~~~~~ 257 (257)
T PRK06495 235 KTEDAKEAQRAFLEKRPPVFKGR 257 (257)
T ss_pred cChHHHHHHHHHhccCCCCCCCC
Confidence 99999999999999999999863
|
|
| >PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-56 Score=412.59 Aligned_cols=254 Identities=30% Similarity=0.432 Sum_probs=219.8
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
.|++|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||+|.| ++||+|+|++++........
T Consensus 6 ~~~~i~~~~--~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~ 82 (275)
T PRK09120 6 RWDTVKVEV--EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAG-DAWSAGMDLKEYFRETDAQP 82 (275)
T ss_pred ccccEEEEE--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCC-CceecCcCHHHHhhccccch
Confidence 477899999 899999999999999999999999999999999999999999999999 69999999998642111111
Q ss_pred h-hhh--hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCH
Q 020093 147 E-NFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP 223 (331)
Q Consensus 147 ~-~~~--~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 223 (331)
. ... ......++..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~ 162 (275)
T PRK09120 83 EILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGH 162 (275)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCH
Confidence 1 011 1123467788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCc-hhHHHHHH--HHH
Q 020093 224 KKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH-AGLQTLGG--DAT 300 (331)
Q Consensus 224 ~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~-~~~~~~~~--~~~ 300 (331)
.+|++|+++|+.++|+||+++||||+|||+++|++++.+++++|+..||.+++.+|+.++...... ....+.+. ...
T Consensus 163 ~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~ 242 (275)
T PRK09120 163 RDALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLRAAKDGFKRVRELTWDQAEDYLYAKLEQ 242 (275)
T ss_pred HHHHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999765432 22333332 223
Q ss_pred HHHhCCh-hHHHHHHHHhcCCCCC
Q 020093 301 LIFYGTE-EGSEGKTAFVERRRPD 323 (331)
Q Consensus 301 ~~~~~s~-d~~egi~aflekr~p~ 323 (331)
..++.++ |++||+++|++||..+
T Consensus 243 ~~~~~~~~d~~eg~~afl~kr~~~ 266 (275)
T PRK09120 243 ANSLDPEGGREEGLKQFLDDKSYK 266 (275)
T ss_pred HHhhCCHHHHHHHHHHHHhcccCC
Confidence 4457788 8999999999998733
|
|
| >PRK06688 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-56 Score=409.17 Aligned_cols=254 Identities=36% Similarity=0.497 Sum_probs=228.3
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
..|.+++ +++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++....... .
T Consensus 5 ~~i~~~~--~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~--~ 79 (259)
T PRK06688 5 TDLLVEL--EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAG-RAFSAGGDIKDFPKAPPKP--P 79 (259)
T ss_pred CceEEEE--ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCccCHHHHhccCcch--H
Confidence 4588888 899999999999999999999999999999999999999999999999 6999999999875422111 1
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
.....+.+++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..+|++
T Consensus 80 ~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~ 159 (259)
T PRK06688 80 DELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAE 159 (259)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHH
Confidence 11223457888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCCh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~ 307 (331)
|+++|++++++||+++||||+++|++++.+.+.+++++|+..+|.+++.+|+.++...+. .......|...+..++.++
T Consensus 160 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~ 239 (259)
T PRK06688 160 MLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASALRYTKRAINAATLTELEEALAREAAGFGRLLRTP 239 (259)
T ss_pred HHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999999999999999999999999999999876543 3344555666777889999
Q ss_pred hHHHHHHHHhcCCCCCCCCC
Q 020093 308 EGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 308 d~~egi~aflekr~p~f~~~ 327 (331)
|.++++++|++||+|+|+++
T Consensus 240 ~~~~~~~af~~~~~p~~~~~ 259 (259)
T PRK06688 240 DFREGATAFIEKRKPDFTGF 259 (259)
T ss_pred HHHHHHHHHHcCCCCCCCCC
Confidence 99999999999999999864
|
|
| >PRK07509 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=407.28 Aligned_cols=254 Identities=28% Similarity=0.382 Sum_probs=222.7
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
++.+.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.| ++||+|+|++++.........
T Consensus 2 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 78 (262)
T PRK07509 2 MDRVSVTI--EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEG-GAFCAGLDVKSVASSPGNAVK 78 (262)
T ss_pred CceEEEEe--eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCcCCCcCHHHHhcccchhhh
Confidence 46788999 899999999999999999999999999999999999999999999999 599999999987532111111
Q ss_pred hhh------hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhh
Q 020093 148 NFG------RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221 (331)
Q Consensus 148 ~~~------~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v 221 (331)
... ...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~ 158 (262)
T PRK07509 79 LLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLV 158 (262)
T ss_pred hHhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHh
Confidence 110 01123466678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHH
Q 020093 222 GPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDAT 300 (331)
Q Consensus 222 G~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~ 300 (331)
|..+|++|+++|++++|+||+++||||++++ ++.+++.+++++|+..+|.+++.+|+.++..... .......+...+
T Consensus 159 g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~ 236 (262)
T PRK07509 159 RKDVARELTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRSPDAIAAAKRLINRSWTASVRALLARESVEQ 236 (262)
T ss_pred CHHHHHHHHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999995 4788999999999999999999999999986543 233445566677
Q ss_pred HHHhCChhHHHHHHHHhcCCCCCCCC
Q 020093 301 LIFYGTEEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 301 ~~~~~s~d~~egi~aflekr~p~f~~ 326 (331)
..++.++|++||+++|+|||+|.|++
T Consensus 237 ~~~~~~~d~~e~~~af~ekr~p~~~~ 262 (262)
T PRK07509 237 IRLLLGKNQKIAVKAQMKKRAPKFLD 262 (262)
T ss_pred HHHhcChhHHHHHHHHhcCCCCCCCC
Confidence 78889999999999999999999974
|
|
| >PRK07260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=404.08 Aligned_cols=251 Identities=29% Similarity=0.374 Sum_probs=222.2
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC-cch
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-ADY 146 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~-~~~ 146 (331)
|+++.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... ...
T Consensus 1 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 77 (255)
T PRK07260 1 FEHIIYEV--EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANG-KVFSVGGDLVEMKRAVDEDDV 77 (255)
T ss_pred CCceEEEE--ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcccccCHHHHHhhccccch
Confidence 45688888 899999999999999999999999999999999999999999999999 69999999998753111 111
Q ss_pred hhhh--hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 147 ENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 147 ~~~~--~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
.... ...+.+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~ 157 (255)
T PRK07260 78 QSLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLN 157 (255)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHH
Confidence 1111 11235677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHH
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIF 303 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~ 303 (331)
++++|+++|++++|+||+++||||+++|.+++.+++.++++++++.+|.+++.+|+.++..... .......+...+..+
T Consensus 158 ~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~ 237 (255)
T PRK07260 158 RATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSSNSYAAIKSLVWESFFKGWEDYAKLELALQESL 237 (255)
T ss_pred HHHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986543 333445566667778
Q ss_pred hCChhHHHHHHHHhcCCC
Q 020093 304 YGTEEGSEGKTAFVERRR 321 (331)
Q Consensus 304 ~~s~d~~egi~aflekr~ 321 (331)
+.++|++||+++|++||+
T Consensus 238 ~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 238 AFKEDFKEGVRAFSERRR 255 (255)
T ss_pred hcCHHHHHHHHHHHhcCC
Confidence 899999999999999985
|
|
| >PRK06023 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-55 Score=401.32 Aligned_cols=245 Identities=23% Similarity=0.384 Sum_probs=216.5
Q ss_pred cEEEEEeeCC---CEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 70 DIIYEKAVGE---GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 70 ~v~~~~~~~~---~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
.|.+++ ++ +|++||||||+++|+||.+|+++|.++++.++.|+++++|||+|.| ++||+|+|++++.......
T Consensus 4 ~i~~~~--~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g-~~FcaG~Dl~~~~~~~~~~- 79 (251)
T PRK06023 4 HILVER--PGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTE-GCFSAGNDMQDFLAAAMGG- 79 (251)
T ss_pred eEEEEe--ecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeecCcCHHHHhhccccc-
Confidence 578887 66 4999999999999999999999999999999999999999999999 5999999999865321111
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
... ...+.+++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 80 ~~~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a 158 (251)
T PRK06023 80 TSF-GSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRA 158 (251)
T ss_pred hhh-HHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHH
Confidence 111 1123467788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHhCC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGT 306 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~s 306 (331)
++++++|+.++|+||+++||||+|||.+++.+++.+++++|+..||.+++.+|+.++..........+.+...+..++.+
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~l~~~~~~e~~~~~~~~~~ 238 (251)
T PRK06023 159 FALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQIARDLMRGPREDILARIDEEAKHFAARLKS 238 (251)
T ss_pred HHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999865433333344455566778899
Q ss_pred hhHHHHHHHHhcC
Q 020093 307 EEGSEGKTAFVER 319 (331)
Q Consensus 307 ~d~~egi~aflek 319 (331)
+|++||+++|+||
T Consensus 239 ~~~~e~~~af~e~ 251 (251)
T PRK06023 239 AEARAAFEAFMRR 251 (251)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999985
|
|
| >PRK07854 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-55 Score=397.79 Aligned_cols=242 Identities=30% Similarity=0.432 Sum_probs=213.8
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhh
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 150 (331)
|.+++ +++|++||||||+++|+||.+|+.+|.++++++++| ++++|||||.| ++||+|+|+++... ....
T Consensus 2 ~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g-~~F~aG~Dl~~~~~-----~~~~- 71 (243)
T PRK07854 2 IGVTR--DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQG-TVFCAGADLSGDVY-----ADDF- 71 (243)
T ss_pred ceEEE--eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCC-CceecccCCccchh-----HHHH-
Confidence 56777 899999999999999999999999999999999865 99999999999 69999999985211 1111
Q ss_pred hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHH
Q 020093 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW 230 (331)
Q Consensus 151 ~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ 230 (331)
...+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.++|++|+
T Consensus 72 ~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ 151 (243)
T PRK07854 72 PDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAML 151 (243)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHH
Confidence 11245677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHhCChhHH
Q 020093 231 FLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGTEEGS 310 (331)
Q Consensus 231 ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 310 (331)
++|++++|+||+++||||+|++ +. ++.+++++|++.||.+++.+|+.++.. .......+.+......++.++|++
T Consensus 152 ltg~~~~a~eA~~~Glv~~v~~---~~-~a~~~a~~l~~~~~~a~~~~K~~l~~~-~~~~~~~~~e~~~~~~~~~~~d~~ 226 (243)
T PRK07854 152 LGAEKLTAEQALATGMANRIGT---LA-DAQAWAAEIAGLAPLALQHAKRVLNDD-GAIEEAWPAHKELFDKAWASQDAI 226 (243)
T ss_pred HcCCCcCHHHHHHCCCcccccC---HH-HHHHHHHHHHhCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhcCchHH
Confidence 9999999999999999999975 33 799999999999999999999999875 223334455666777788999999
Q ss_pred HHHHHHhcCCCCCCCCC
Q 020093 311 EGKTAFVERRRPDFLKF 327 (331)
Q Consensus 311 egi~aflekr~p~f~~~ 327 (331)
||+++|++||+|+|+++
T Consensus 227 eg~~af~~kr~p~~~~~ 243 (243)
T PRK07854 227 EAQVARIEKRPPKFQGA 243 (243)
T ss_pred HHHHHHhCCCCCCCCCC
Confidence 99999999999999763
|
|
| >PRK06072 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-55 Score=399.71 Aligned_cols=246 Identities=25% Similarity=0.320 Sum_probs=217.9
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhh
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 150 (331)
|.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++|++|||+|.| ++||+|+|++++.... ....
T Consensus 2 i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g-~~F~aG~Dl~~~~~~~---~~~~- 74 (248)
T PRK06072 2 IKVES--REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEG-RAFCVGADLSEFAPDF---AIDL- 74 (248)
T ss_pred eEEEE--ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCcccCcCHHHHhhhh---HHHH-
Confidence 56777 899999999999999999999999999999999999999999999999 6999999999764311 1111
Q ss_pred hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHH
Q 020093 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW 230 (331)
Q Consensus 151 ~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ 230 (331)
...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|. ++++++
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~ll 153 (248)
T PRK06072 75 RETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEIL 153 (248)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHH
Confidence 1224567788999999999999999999999999999999999999999999999999999999999999997 899999
Q ss_pred HcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCChhH
Q 020093 231 FLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTEEG 309 (331)
Q Consensus 231 ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~ 309 (331)
++|+.++|+||+++||||++ +++.+++.++|++|+..||.+++.+|+.++..... .....+.+...+..++.++|+
T Consensus 154 l~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~ 230 (248)
T PRK06072 154 VLGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDF 230 (248)
T ss_pred HhCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhH
Confidence 99999999999999999963 46789999999999999999999999999876432 334445566677788999999
Q ss_pred HHHHHHHhcCCCCCCCCC
Q 020093 310 SEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 310 ~egi~aflekr~p~f~~~ 327 (331)
+||+++|++||+|+|+++
T Consensus 231 ~eg~~af~~kr~p~~~~~ 248 (248)
T PRK06072 231 KEGISSFKEKREPKFKGI 248 (248)
T ss_pred HHHHHHHhcCCCCCCCCC
Confidence 999999999999999864
|
|
| >COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-55 Score=400.74 Aligned_cols=253 Identities=34% Similarity=0.521 Sum_probs=221.1
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
.+..+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.| ++||+|+||+++........
T Consensus 3 ~~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g-~~FsaG~Dl~~~~~~~~~~~ 79 (257)
T COG1024 3 TYETILVER--EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAG-KAFSAGADLKELLSPEDGNA 79 (257)
T ss_pred CCCeeEEEe--eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CceecccCHHHHhcccchhH
Confidence 346688888 788999999999999999999999999999999999999999999999 79999999998764111111
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
........+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a 159 (257)
T COG1024 80 AENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRA 159 (257)
T ss_pred HHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHH
Confidence 11112234568889999999999999999999999999999999999999999999999999987999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCC-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHh
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPL-EKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFY 304 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~ 304 (331)
++|++||+.++++||+++|||+++++. +++.+.+.+++++++. +|.++..+|+.++..... .......+...+...+
T Consensus 160 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~~a~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~ 238 (257)
T COG1024 160 KELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-PPLALAATKRLVRAALEADLAEALEAEALAFARLF 238 (257)
T ss_pred HHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999986 7999999999999999 999999999999987543 2333344444444467
Q ss_pred CChhHHHHHHHHhcCCCCCC
Q 020093 305 GTEEGSEGKTAFVERRRPDF 324 (331)
Q Consensus 305 ~s~d~~egi~aflekr~p~f 324 (331)
.++|++||+++|++ |+|.|
T Consensus 239 ~~~d~~eg~~a~~~-r~p~~ 257 (257)
T COG1024 239 SSEDFREGVRAFLE-RKPVF 257 (257)
T ss_pred cChhHHHHHHHHHc-cCCCC
Confidence 89999999999999 99988
|
|
| >PLN02888 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-55 Score=402.00 Aligned_cols=249 Identities=33% Similarity=0.424 Sum_probs=217.0
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
+.|.++.. +++|++||||||+++|+||.+|+.+|.++|++++.|++|++|||||.| ++||+|+|++++...... .
T Consensus 9 ~~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~--~- 83 (265)
T PLN02888 9 NLILVPKS-RNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSG-RAFCSGVDLTAAEEVFKG--D- 83 (265)
T ss_pred CeEEEEec-cCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CcccCCCCHHHHHhhccc--h-
Confidence 45777742 688999999999999999999999999999999999999999999999 699999999976421110 0
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
. .....+++..|..+||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|+++|++
T Consensus 84 ~-~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 162 (265)
T PLN02888 84 V-KDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRARE 162 (265)
T ss_pred h-hHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHH
Confidence 1 111235667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHh--C
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFY--G 305 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~--~ 305 (331)
|+++|++++|+||+++||||+|||++++.+++.+++++|++.+|.+++.+|+.++...+. .......+...+..++ .
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~ 242 (265)
T PLN02888 163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVLRYKSVINDGLKLDLGHALQLEKERAHDYYNGM 242 (265)
T ss_pred HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999876543 3333444444445554 5
Q ss_pred ChhHHHHHHHHhcCCCCC
Q 020093 306 TEEGSEGKTAFVERRRPD 323 (331)
Q Consensus 306 s~d~~egi~aflekr~p~ 323 (331)
++|++||+++|+|||+|+
T Consensus 243 ~~d~~e~~~af~ekr~~~ 260 (265)
T PLN02888 243 TKEQFQKMQEFIAGRSSK 260 (265)
T ss_pred CHHHHHHHHHHHhcCCCC
Confidence 899999999999999886
|
|
| >TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=398.28 Aligned_cols=246 Identities=20% Similarity=0.336 Sum_probs=211.8
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhh
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 150 (331)
|.+++ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++... .....
T Consensus 3 v~~~~--~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g-~~FcaG~Dl~~~~~~---~~~~~- 74 (251)
T TIGR03189 3 VWLER--DGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEG-PHFSFGASVAEHMPD---QCAAM- 74 (251)
T ss_pred EEEEe--eCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCC-CceecCcChhhhCch---hHHHH-
Confidence 67788 8899999999997 5999999999999999999999999999999999 599999999875311 11111
Q ss_pred hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHH
Q 020093 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW 230 (331)
Q Consensus 151 ~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ 230 (331)
.....+++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++ ++++|++++|..+|++|+
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~~a~~l~ 153 (251)
T TIGR03189 75 LASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMGRVAAEDLL 153 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhCHHHHHHHH
Confidence 1123467788999999999999999999999999999999999999999999999999874 578999999999999999
Q ss_pred HcCCCCCHHHHHhcCcccEecCCCcHHHHHHHH-HHHHhccCHHHHHHHHHHHHccccCc-hhHH-HHHHHHHHHHhCCh
Q 020093 231 FLARFYTAEEAEKMGLVNTVVPLEKLEQETIKW-SREILRNSPTAIRVLKSALNAVDDGH-AGLQ-TLGGDATLIFYGTE 307 (331)
Q Consensus 231 ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~-a~~la~~~~~a~~~~K~~l~~~~~~~-~~~~-~~~~~~~~~~~~s~ 307 (331)
++|++++|+||+++||||+|+++++ +.+.++ +++|+..||.+++.+|++++...... .... ..+......++.++
T Consensus 154 ltg~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~ 231 (251)
T TIGR03189 154 YSGRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMATH 231 (251)
T ss_pred HcCCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCH
Confidence 9999999999999999999997543 566666 69999999999999999998765432 2222 34555567788999
Q ss_pred hHHHHHHHHhcCCCCCCCCC
Q 020093 308 EGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 308 d~~egi~aflekr~p~f~~~ 327 (331)
|++||+++|++||+|.|+++
T Consensus 232 d~~eg~~af~ekr~p~~~~~ 251 (251)
T TIGR03189 232 DAVEGLNAFLEKRPALWEDR 251 (251)
T ss_pred hHHHHHHHHHhcCCCCCCCC
Confidence 99999999999999999763
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. |
| >PRK07938 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-55 Score=398.41 Aligned_cols=239 Identities=27% Similarity=0.357 Sum_probs=209.5
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhh-hhhhHHH
Q 020093 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF-GRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~-~~~~~~~ 156 (331)
+++|++||||||++ |+||.+|+.+|.++++.++.|++||+|||+|.| ++||+|+|++++..... ..... .......
T Consensus 9 ~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~ 85 (249)
T PRK07938 9 EPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEG-RGFNAGVDIKELQATPG-FTALIDANRGCFA 85 (249)
T ss_pred CCCEEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCC-CceecCcCHHHHhhccc-hhHHHHHHHHHHH
Confidence 78999999999985 999999999999999999999999999999999 69999999998643211 01101 0112346
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCC
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFY 236 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~ 236 (331)
++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++|+.++++|+++|+.+
T Consensus 86 ~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~~~ 162 (249)
T PRK07938 86 AFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATI 162 (249)
T ss_pred HHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCCcC
Confidence 7778999999999999999999999999999999999999999999999985 4578899999999999999999999
Q ss_pred CHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCChhHHHHHHH
Q 020093 237 TAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTEEGSEGKTA 315 (331)
Q Consensus 237 ~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~a 315 (331)
+|+||+++||||+|||++++++++.+++++|+..+|.+++.+|+.++...+. .....+.+......++.++|++||+++
T Consensus 163 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~a 242 (249)
T PRK07938 163 TAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIRAAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDA 242 (249)
T ss_pred CHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999876443 233345555566677899999999999
Q ss_pred HhcCCCC
Q 020093 316 FVERRRP 322 (331)
Q Consensus 316 flekr~p 322 (331)
|+|||+|
T Consensus 243 f~ekr~p 249 (249)
T PRK07938 243 FVEKRKA 249 (249)
T ss_pred HHhcCCC
Confidence 9999987
|
|
| >PRK08259 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=398.63 Aligned_cols=246 Identities=27% Similarity=0.351 Sum_probs=211.5
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
++|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++..... . .
T Consensus 3 ~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g-~~FcaG~Dl~~~~~~~~-~--~ 76 (254)
T PRK08259 3 MSVRVER--NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAG-GTFCAGADLKAVGTGRG-N--R 76 (254)
T ss_pred ceEEEEE--ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCCcChHHHhcccc-h--h
Confidence 4588888 899999999999999999999999999999999999999999999999 69999999998653211 0 0
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
........+...+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++
T Consensus 77 ~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ 156 (254)
T PRK08259 77 LHPSGDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMD 156 (254)
T ss_pred hhhhhcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHH
Confidence 10000111122335899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCCh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~ 307 (331)
|+++|+.++|+||+++||||+|||.+++.+++.++|++|++.||.+++.+|++++..... .......+...+...+. +
T Consensus 157 lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~ 235 (254)
T PRK08259 157 LILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLRADRLSALEQWGLPEEAALANEFAHGLAVLA-A 235 (254)
T ss_pred HHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-h
Confidence 999999999999999999999999999999999999999999999999999999876443 23333445444455555 9
Q ss_pred hHHHHHHHHhcCCC
Q 020093 308 EGSEGKTAFVERRR 321 (331)
Q Consensus 308 d~~egi~aflekr~ 321 (331)
|++||+++|++|+.
T Consensus 236 d~~egi~af~~~~~ 249 (254)
T PRK08259 236 EALEGAARFAAGAG 249 (254)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999998744
|
|
| >PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-54 Score=397.60 Aligned_cols=252 Identities=20% Similarity=0.254 Sum_probs=217.5
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
+|+++.+++ +++|++||||||+++|+||.+|+.+|.+++++++ +++++|||+|.| ++||+|+||+++........
T Consensus 2 ~~~~i~~~~--~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g-~~FsaG~Dl~~~~~~~~~~~ 76 (255)
T PRK07112 2 DYQTIRVRQ--QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLP-EVFCFGADFSAIAEKPDAGR 76 (255)
T ss_pred CCceEEEEe--eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCC-CCcccCcCHHHHhhccccch
Confidence 356789998 8999999999999999999999999999999998 369999999999 69999999998753211111
Q ss_pred hh-hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHH
Q 020093 147 EN-FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (331)
Q Consensus 147 ~~-~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 225 (331)
.. .....+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +.+|++++|..+
T Consensus 77 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~ 155 (255)
T PRK07112 77 ADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQK 155 (255)
T ss_pred hhhhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHH
Confidence 11 1112235678889999999999999999999999999999999999999999999999998764 678999999999
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHhC
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYG 305 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~ 305 (331)
|++|+++|++++|+||++|||||+|+|+++. .+.+++++|+..+|.+++.+|+.++..........+.+......++.
T Consensus 156 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~a~~~~K~~~~~~~~~~~~~~~~e~~~~~~~~~ 233 (255)
T PRK07112 156 AHYMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLNKAAVARYKSYASTLDDTVAAARPAALAANIEMFA 233 (255)
T ss_pred HHHHHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999987653 57889999999999999999999986533333445566666777889
Q ss_pred ChhHHHHHHHHhcCCCCCCCC
Q 020093 306 TEEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 306 s~d~~egi~aflekr~p~f~~ 326 (331)
++|++||+++|++||+|.|+.
T Consensus 234 ~~~~~eg~~af~~kr~p~~~~ 254 (255)
T PRK07112 234 DPENLRKIARYVETGKFPWEA 254 (255)
T ss_pred ChHHHHHHHHHHcCCCCCCCC
Confidence 999999999999999999975
|
|
| >PRK05870 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=398.08 Aligned_cols=245 Identities=26% Similarity=0.348 Sum_probs=217.0
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
+.|.+++ +++|++||||||+++|+||.+|+++|.++|+.++.|+++++|||+|.| ++||+|+|++++..........
T Consensus 3 ~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 79 (249)
T PRK05870 3 DPVLLDV--DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAG-KAFCAGADLTALGAAPGRPAED 79 (249)
T ss_pred ccEEEEc--cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCeecCcChHHHhcccccchHH
Confidence 4588888 899999999999999999999999999999999999999999999999 6999999999875321111111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
. ...+.+++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|+.+|++
T Consensus 80 ~-~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~ 158 (249)
T PRK05870 80 G-LRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARA 158 (249)
T ss_pred H-HHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHH
Confidence 1 112345667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc-C-chhHHHHHHHHHHHHhCC
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD-G-HAGLQTLGGDATLIFYGT 306 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~-~~~~~~~~~~~~~~~~~s 306 (331)
|+++|++++|+||+++||||+++ +++.+++.++|++|+..||.+++.+|+.++.... . .....+.+...+..++.+
T Consensus 159 l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~ 236 (249)
T PRK05870 159 ALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELVLATKASMRATASLAQHAAAVEFELGPQAASVQS 236 (249)
T ss_pred HHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999 7899999999999999999999999999998653 2 334445566677788899
Q ss_pred hhHHHHHHHHhcC
Q 020093 307 EEGSEGKTAFVER 319 (331)
Q Consensus 307 ~d~~egi~aflek 319 (331)
+|++||+++|+|+
T Consensus 237 ~d~~eg~~af~~~ 249 (249)
T PRK05870 237 PEFAARLAAAQRR 249 (249)
T ss_pred hhHHHHHHHHhcC
Confidence 9999999999985
|
|
| >PRK07827 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-54 Score=397.12 Aligned_cols=252 Identities=26% Similarity=0.416 Sum_probs=219.8
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
...+.++. +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++.........
T Consensus 5 ~~~i~~~~--~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~ 81 (260)
T PRK07827 5 DTLVRYAV--DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTG-GTFCAGADLSEAGGGGGDPYD 81 (260)
T ss_pred CcceEEEe--eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCC-CCccCCcChHHHhhcccCchh
Confidence 35688888 899999999999999999999999999999999999999999999999 699999999987532111111
Q ss_pred h--hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHH
Q 020093 148 N--FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (331)
Q Consensus 148 ~--~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 225 (331)
. .....+.+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++ ..+
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~ 160 (260)
T PRK07827 82 AAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRA 160 (260)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHH
Confidence 1 0112345678889999999999999999999999999999999999999999999999999999999999875 568
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHh
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFY 304 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~ 304 (331)
+++++++|+.++|+||+++||||++++ ++++.+.+++++|++.+|.+++.+|+.++..... .....+.+...+..++
T Consensus 161 a~~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (260)
T PRK07827 161 AARYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGSPQGLAESKALTTAAVLAGFDRDAEELTEESARLF 238 (260)
T ss_pred HHHHHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999974 5999999999999999999999999999986543 2334455556677788
Q ss_pred CChhHHHHHHHHhcCCCCCCC
Q 020093 305 GTEEGSEGKTAFVERRRPDFL 325 (331)
Q Consensus 305 ~s~d~~egi~aflekr~p~f~ 325 (331)
.++|++|++++|++||+|+|+
T Consensus 239 ~~~~~~~~~~af~~kr~p~~~ 259 (260)
T PRK07827 239 VSDEAREGMTAFLQKRPPRWA 259 (260)
T ss_pred cChhHHHHHHHHhcCCCCCCC
Confidence 999999999999999999995
|
|
| >PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-55 Score=415.02 Aligned_cols=255 Identities=23% Similarity=0.319 Sum_probs=223.4
Q ss_pred cEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC-cchhh
Q 020093 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-ADYEN 148 (331)
Q Consensus 70 ~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~-~~~~~ 148 (331)
.|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.|+++||+|+|++++..... .....
T Consensus 4 ~v~~~~--~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (342)
T PRK05617 4 EVLAEV--EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLA 81 (342)
T ss_pred eEEEEE--ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchh
Confidence 588888 899999999999999999999999999999999999999999999999669999999998643111 00110
Q ss_pred --hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 149 --FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 149 --~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
.......+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++| .+|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~a 160 (342)
T PRK05617 82 ADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-ALG 160 (342)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HHH
Confidence 11112346778899999999999999999999999999999999999999999999999999999999999977 689
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHH-----------------------------------------------
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQE----------------------------------------------- 259 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~----------------------------------------------- 259 (331)
++|++||+.++|+||+++||||+++|++++.+.
T Consensus 161 ~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 240 (342)
T PRK05617 161 TYLALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGDT 240 (342)
T ss_pred HHHHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999998876
Q ss_pred ---------------HHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCChhHHHHHHHHh-cC-CC
Q 020093 260 ---------------TIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTEEGSEGKTAFV-ER-RR 321 (331)
Q Consensus 260 ---------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~afl-ek-r~ 321 (331)
+.+++++|++.||.+++.+|++++...+. ..+....+......++.++|++||+++|+ +| |+
T Consensus 241 ~~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r~ 320 (342)
T PRK05617 241 VEDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDRN 320 (342)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCCC
Confidence 88999999999999999999999876543 33445666677778889999999999997 76 99
Q ss_pred CCCCCC
Q 020093 322 PDFLKF 327 (331)
Q Consensus 322 p~f~~~ 327 (331)
|+|++.
T Consensus 321 p~~~~~ 326 (342)
T PRK05617 321 PKWSPA 326 (342)
T ss_pred CCCCCC
Confidence 999876
|
|
| >PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-54 Score=412.73 Aligned_cols=256 Identities=23% Similarity=0.295 Sum_probs=217.8
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
+..|.+++ +++|++||||||+++|+||.+|+.+|.++|+.++.|++||+|||+|.| ++||+|+||+++.........
T Consensus 10 ~~~v~~~~--~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g-~~FcaG~Dl~~~~~~~~~~~~ 86 (379)
T PLN02874 10 EEVVLGEE--KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAG-RAFSAGGDLKMFYDGRESDDS 86 (379)
T ss_pred CCceEEEE--ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCccCHHHHHhhcccchH
Confidence 45688888 899999999999999999999999999999999999999999999999 699999999987432111111
Q ss_pred hhh-hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 148 NFG-RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 148 ~~~-~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
... ....+.+...|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. ++
T Consensus 87 ~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a 165 (379)
T PLN02874 87 CLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LG 165 (379)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HH
Confidence 111 1122345678899999999999999999999999999999999999999999999999999999999999986 89
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHH---H--------------------------------------------
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQ---E-------------------------------------------- 259 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~---~-------------------------------------------- 259 (331)
++|++||++++|+||+++|||+++||++++.+ +
T Consensus 166 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~ 245 (379)
T PLN02874 166 EYLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKD 245 (379)
T ss_pred HHHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCC
Confidence 99999999999999999999999999988865 2
Q ss_pred --------------------HHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhC---ChhHHHHHHH
Q 020093 260 --------------------TIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYG---TEEGSEGKTA 315 (331)
Q Consensus 260 --------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~---s~d~~egi~a 315 (331)
+.+++++|++.||.+++.+|++++...+. ..+....+......++. ++|++||++|
T Consensus 246 ~~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~A 325 (379)
T PLN02874 246 TVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRA 325 (379)
T ss_pred CHHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccce
Confidence 24789999999999999999999976542 33444555454444555 8999999999
Q ss_pred Hh-cC-CCCCCCCC
Q 020093 316 FV-ER-RRPDFLKF 327 (331)
Q Consensus 316 fl-ek-r~p~f~~~ 327 (331)
|+ +| |+|+|++.
T Consensus 326 flidK~r~P~w~~~ 339 (379)
T PLN02874 326 LVIDKDNAPKWNPS 339 (379)
T ss_pred EEEcCCCCCCCCCC
Confidence 97 88 99999864
|
|
| >PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-53 Score=394.14 Aligned_cols=256 Identities=16% Similarity=0.201 Sum_probs=218.6
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCC-CceeccccccchhcCCC
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT-EAFCSGGDQALRTRDGY 143 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~-~~FcaG~Dl~~~~~~~~ 143 (331)
+...+.|.+++. +++|++||||||+ +|+||.+|+.+|.+++++++.|+++|+|||||.|+ ++||+|+|++++.....
T Consensus 7 ~~~~~~i~~~~~-~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~ 84 (278)
T PLN03214 7 PGATPGVRVDRR-PGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKT 84 (278)
T ss_pred CCCCCceEEEEc-CCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhcccc
Confidence 344567888872 4889999999985 69999999999999999999999999999999973 59999999998643111
Q ss_pred cchhhh-hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccC-CCCchHHHHHHHhh
Q 020093 144 ADYENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGS-FDAGYGSSIMSRLV 221 (331)
Q Consensus 144 ~~~~~~-~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl-~p~~g~~~~L~r~v 221 (331)
...... .......++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|+++++++|++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~ 164 (278)
T PLN03214 85 SAARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVI 164 (278)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhc
Confidence 110000 0111235677899999999999999999999999999999999999999999999999 59888899999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHH
Q 020093 222 GPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDAT 300 (331)
Q Consensus 222 G~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~ 300 (331)
|..+|++|+++|+.|+++||+++||||+|||.+++.+.+.+++++|+..+|.+++.+|+.++..... .....+.+...+
T Consensus 165 G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~ 244 (278)
T PLN03214 165 DRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLPSAARAATKALLREEFSAAWEAYYEEEAKGG 244 (278)
T ss_pred CHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999976542 233445555666
Q ss_pred HHHhCChhHHHHHHHHhcCCCC
Q 020093 301 LIFYGTEEGSEGKTAFVERRRP 322 (331)
Q Consensus 301 ~~~~~s~d~~egi~aflekr~p 322 (331)
..++.++|++||+++|+||.+-
T Consensus 245 ~~~~~s~d~~egi~aflek~~~ 266 (278)
T PLN03214 245 WKMLSEPSIIKALGGVMERLSS 266 (278)
T ss_pred HHHhCCHHHHHHHHHHHHHHhh
Confidence 6788999999999999998543
|
|
| >PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-54 Score=390.84 Aligned_cols=243 Identities=35% Similarity=0.586 Sum_probs=219.3
Q ss_pred EEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhh
Q 020093 73 YEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRL 152 (331)
Q Consensus 73 ~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 152 (331)
|+. +++|++||||||+++|+||.+|+.+|.++|+.++.|+++++||++|.| ++||+|.|++++... ..........
T Consensus 2 ~~~--~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~-~~F~~G~Dl~~~~~~-~~~~~~~~~~ 77 (245)
T PF00378_consen 2 YEI--EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGG-KAFCAGADLKEFLNS-DEEEAREFFR 77 (245)
T ss_dssp EEE--ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEEST-SESBESB-HHHHHHH-HHHHHHHHHH
T ss_pred EEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecc-cccccccchhhhhcc-ccccccccch
Confidence 677 899999999999999999999999999999999999999999999988 699999999987643 1111111223
Q ss_pred hHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHc
Q 020093 153 NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFL 232 (331)
Q Consensus 153 ~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~lt 232 (331)
.+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|++++++
T Consensus 78 ~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~ 157 (245)
T PF00378_consen 78 RFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLT 157 (245)
T ss_dssp HHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCChhHHH
Q 020093 233 ARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTEEGSE 311 (331)
Q Consensus 233 G~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~e 311 (331)
|++++|+||+++||||+|+|+++|.+.+.+++++++..++.+++.+|+.++..... .......+...+..++.++|++|
T Consensus 158 g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 237 (245)
T PF00378_consen 158 GEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALRATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQE 237 (245)
T ss_dssp TCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred cccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999986443 33445666777888999999999
Q ss_pred HHHHHhcC
Q 020093 312 GKTAFVER 319 (331)
Q Consensus 312 gi~aflek 319 (331)
++++|+||
T Consensus 238 ~~~~f~eK 245 (245)
T PF00378_consen 238 GIAAFLEK 245 (245)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhCc
Confidence 99999998
|
Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A .... |
| >PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-52 Score=382.84 Aligned_cols=244 Identities=23% Similarity=0.296 Sum_probs=218.1
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
.+..+.+++ +++|++|+||||+++|+||.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++..... ..
T Consensus 3 ~~~~~~~~~--~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g-~~F~aG~Dl~~~~~~~~-~~ 78 (249)
T PRK07110 3 MKVVELREV--EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYP-NYFATGGTQEGLLSLQT-GK 78 (249)
T ss_pred CCceEEEEe--eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCeeCCcChHHHhhccc-hh
Confidence 456788998 899999999999999999999999999999999999999999999999 69999999988643211 11
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
..+ ...+++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|
T Consensus 79 ~~~---~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a 155 (249)
T PRK07110 79 GTF---TEANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG 155 (249)
T ss_pred hhH---hhHHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence 111 11467888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYG 305 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~ 305 (331)
++++++|++++++||+++||||+|++++++.+++.+++++|++.||.+++.+|+.++..... .....+.+...+..++.
T Consensus 156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~ 235 (249)
T PRK07110 156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFH 235 (249)
T ss_pred HHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999876543 33444566667788899
Q ss_pred ChhHHHHHHHHh
Q 020093 306 TEEGSEGKTAFV 317 (331)
Q Consensus 306 s~d~~egi~afl 317 (331)
++|.+||+++..
T Consensus 236 ~~~~~egi~~~~ 247 (249)
T PRK07110 236 QPEVKRRIESLY 247 (249)
T ss_pred CHhHHHHHHHhc
Confidence 999999998763
|
|
| >PRK06190 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-52 Score=383.06 Aligned_cols=247 Identities=29% Similarity=0.425 Sum_probs=214.4
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
++.|.+++ +++|++||||||+++|+||.+|+++|.++|++++.|+++++|||+|.| ++||+|+|++++...... .
T Consensus 3 ~~~v~~~~--~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~-~- 77 (258)
T PRK06190 3 EPILLVET--HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGAD-PAFCAGLDLKELGGDGSA-Y- 77 (258)
T ss_pred CceEEEEe--eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCccCCcCHHHHhcccch-h-
Confidence 35688888 899999999999999999999999999999999999999999999998 699999999987532111 1
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHH
Q 020093 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (331)
Q Consensus 148 ~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~ 227 (331)
. ....+..++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|+
T Consensus 78 ~-~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 156 (258)
T PRK06190 78 G-AQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRAR 156 (258)
T ss_pred h-HHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHH
Confidence 1 112345678889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCC
Q 020093 228 EMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGT 306 (331)
Q Consensus 228 ~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s 306 (331)
+|+++|++++|+||+++||||+++|++++++++.+++++|+..||.+++.+|+.++...+. .....+.+......++.+
T Consensus 157 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s 236 (258)
T PRK06190 157 RMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVRALKASYDDGAAAQTGDALALEAEAARAHNRS 236 (258)
T ss_pred HHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999976543 334445566666667766
Q ss_pred ---hhHHHHHHHHhcCC
Q 020093 307 ---EEGSEGKTAFVERR 320 (331)
Q Consensus 307 ---~d~~egi~aflekr 320 (331)
+..++-.++|+.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~ 253 (258)
T PRK06190 237 VSPDGIAARREAVMARG 253 (258)
T ss_pred CChHHHHHHHHHHHHhh
Confidence 44455555666553
|
|
| >PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-52 Score=401.45 Aligned_cols=254 Identities=18% Similarity=0.242 Sum_probs=218.5
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc-h
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD-Y 146 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~-~ 146 (331)
..+|++++ +++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.| ++||+|+|++++....... .
T Consensus 36 ~~~V~~e~--~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~G-kaFcAGgDl~~l~~~~~~~~~ 112 (401)
T PLN02157 36 DYQVLVEG--SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSG-RAFCAGGDIVSLYHLRKRGSP 112 (401)
T ss_pred CCceEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CCccCCcCHHHHHhhccccch
Confidence 35688888 899999999999999999999999999999999999999999999999 6999999999875321111 1
Q ss_pred hhhh--hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 147 ENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 147 ~~~~--~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
.... ....+.+...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus 113 ~~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~- 191 (401)
T PLN02157 113 DAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR- 191 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-
Confidence 1111 1123456678999999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHh
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFY 304 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~ 304 (331)
.+++|++||+.++|+||+++||||++||++++ +++.+++++++..+|.++..+|+.++............+......++
T Consensus 192 ~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~p~av~~~k~~~~~~~~~~~~~l~~~~~~i~~~f 270 (401)
T PLN02157 192 LGEYLGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCF 270 (401)
T ss_pred HHHHHHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHh
Confidence 89999999999999999999999999999998 67789999999999999999999998653212222333455677788
Q ss_pred CChhHHHHHHHH---hcCCCCCCCC
Q 020093 305 GTEEGSEGKTAF---VERRRPDFLK 326 (331)
Q Consensus 305 ~s~d~~egi~af---lekr~p~f~~ 326 (331)
.++|.+|++++| .+||.|+|-.
T Consensus 271 ~~~d~~ei~~al~~~~~kr~~~wa~ 295 (401)
T PLN02157 271 SHDTVEEIIDSLEIEAGRRKDTWCI 295 (401)
T ss_pred cCCCHHHHHHHHHhhhcccchHHHH
Confidence 999999999999 8888898843
|
|
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-52 Score=416.37 Aligned_cols=263 Identities=16% Similarity=0.127 Sum_probs=225.1
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHhccc-CCCeeEEEEEeCCCCcee
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPDRR-------------NAFRPHTVKELIRAFNDARD-DSSVGVIILTGKGTEAFC 130 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~~~-------------Nal~~~~~~eL~~al~~~~~-d~~v~~vVl~g~g~~~Fc 130 (331)
.-.|+++.++...+++|++||||||+++ |+||.+|+.+|.+++++++. |++||+|||||.|+++||
T Consensus 256 ~~~~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~ 335 (550)
T PRK08184 256 GLRYRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAV 335 (550)
T ss_pred ceeeEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEE
Confidence 4456666665533789999999999998 68999999999999999986 799999999999844899
Q ss_pred ccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEc-Cccccch-hhhhhcccEEEEe-------CCceeecC
Q 020093 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA-GYAVGGG-HVLHMVCDLTIAA-------DNAIFGQT 201 (331)
Q Consensus 131 aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~-G~a~GgG-~~Lal~cD~~ia~-------~~a~f~~p 201 (331)
+|+|++............. ......++.+|..+||||||+|| |+|+||| ++|+++||+|||+ ++++|++|
T Consensus 336 aG~Dl~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~p 414 (550)
T PRK08184 336 LAADATLLAHKDHWLVRET-RGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLS 414 (550)
T ss_pred eCCChhhhcccchHHHHHH-HHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECc
Confidence 9999874321110000111 11234567789999999999997 9999999 9999999999999 99999999
Q ss_pred CCCccCCCCchHHHHHHHh-hCHHHHHHH--HHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHH
Q 020093 202 GPKVGSFDAGYGSSIMSRL-VGPKKAREM--WFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVL 278 (331)
Q Consensus 202 e~~~Gl~p~~g~~~~L~r~-vG~~~a~~l--~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~ 278 (331)
|+++|++|++|++++|+|+ +|..+|+++ +++|++++|+||++|||||+++|++++++++.++|++|+..||.+++.+
T Consensus 415 e~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~~~ 494 (550)
T PRK08184 415 ALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLSPDALTGM 494 (550)
T ss_pred cccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999999998 699999997 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHccccC-chhH-HHHHHHHHHHHhCChhHHH---HHHHHhcCCCCCCCCCC
Q 020093 279 KSALNAVDDG-HAGL-QTLGGDATLIFYGTEEGSE---GKTAFVERRRPDFLKFP 328 (331)
Q Consensus 279 K~~l~~~~~~-~~~~-~~~~~~~~~~~~~s~d~~e---gi~aflekr~p~f~~~~ 328 (331)
|++++..... .... ...|...+..+++++|.+| |+++|+|||+|+|++..
T Consensus 495 K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~~~f~~~~ 549 (550)
T PRK08184 495 EANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQKAQFDWNR 549 (550)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccCCCCCCCCCC
Confidence 9999987643 3333 5666777888899999999 99999999999998753
|
|
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-52 Score=412.19 Aligned_cols=261 Identities=15% Similarity=0.132 Sum_probs=222.6
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHhcc-cCCCeeEEEEEeCCCCc-e
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPDRR-------------NAFRPHTVKELIRAFNDAR-DDSSVGVIILTGKGTEA-F 129 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~~~-------------Nal~~~~~~eL~~al~~~~-~d~~v~~vVl~g~g~~~-F 129 (331)
...|.+|.+....+++|++||||||+++ |+|+.+|+.+|.+++.+++ +|++||+|||||.| +. |
T Consensus 252 ~~~~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G-~~~F 330 (546)
T TIGR03222 252 GVRYPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQG-DAEL 330 (546)
T ss_pred CcceeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCC-CCce
Confidence 4445554443322899999999999999 9999999999999999998 56999999999999 46 9
Q ss_pred eccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEE-cCccccch-hhhhhcccEEEE-------eCCceeec
Q 020093 130 CSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV-AGYAVGGG-HVLHMVCDLTIA-------ADNAIFGQ 200 (331)
Q Consensus 130 caG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav-~G~a~GgG-~~Lal~cD~~ia-------~~~a~f~~ 200 (331)
|+|+|++............. ......++.+|..+||||||+| ||+|+||| ++|+++||+||+ +++++|++
T Consensus 331 ~aG~Dl~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~ 409 (546)
T TIGR03222 331 VLAADALLEAHKDHWFVRET-IGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITL 409 (546)
T ss_pred ecCcCccccccccchhHHHH-HHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeC
Confidence 99999984321111000111 1112457788999999999999 89999999 999999999999 89999999
Q ss_pred CCCCccCCCCchHHHHHHHhh-CHHHH--HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHH
Q 020093 201 TGPKVGSFDAGYGSSIMSRLV-GPKKA--REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRV 277 (331)
Q Consensus 201 pe~~~Gl~p~~g~~~~L~r~v-G~~~a--~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~ 277 (331)
||+++|++|++|++++|++++ |..++ ++++++|+.++|+||++||||++|+|++++++++.++|++|++.||.+++.
T Consensus 410 ~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~ 489 (546)
T TIGR03222 410 SELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFSPDALTG 489 (546)
T ss_pred CccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999998 99999 559999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccccC-chhH-HHHHHHHHHHHhCChhHHH---HHHHHhcCCCCCCCCC
Q 020093 278 LKSALNAVDDG-HAGL-QTLGGDATLIFYGTEEGSE---GKTAFVERRRPDFLKF 327 (331)
Q Consensus 278 ~K~~l~~~~~~-~~~~-~~~~~~~~~~~~~s~d~~e---gi~aflekr~p~f~~~ 327 (331)
+|+.++..... .... ...|...+..++.++|.+| |+++|+|||+|+|+-.
T Consensus 490 ~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~p~f~~~ 544 (546)
T TIGR03222 490 LEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGKKAQFDME 544 (546)
T ss_pred HHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCCCCCCCcc
Confidence 99999887543 3333 5667777888899999999 9999999999999743
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=353.61 Aligned_cols=258 Identities=31% Similarity=0.479 Sum_probs=228.4
Q ss_pred ccEEEEEe--eCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 69 TDIIYEKA--VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 69 ~~v~~~~~--~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
.+|.+++. .+.||.+|-+|||.++|+|+.-|+++|.++|+++..|+.+|+|+|++.-+..||+|.||++.......+.
T Consensus 27 ~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev 106 (291)
T KOG1679|consen 27 NEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEV 106 (291)
T ss_pred ceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHH
Confidence 34555543 2678999999999999999999999999999999999999999999988889999999999765543322
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
..+ -..+..++..|.++|.||||+|+|.|+|||++|+++||+|||+++++||++|++++++|++||+++|+|++|.+.|
T Consensus 107 ~~f-V~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~ala 185 (291)
T KOG1679|consen 107 TRF-VNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALA 185 (291)
T ss_pred HHH-HHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHH
Confidence 222 2245678889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCC----cHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHH
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLE----KLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATL 301 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~----~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~ 301 (331)
+||++|++.+++.||..+||||++|... ...+.+.++|++|..+.|.++++.|.++|...+. .......|.....
T Consensus 186 KELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPiavr~aKlAIn~G~evdiasgl~iEe~CYa 265 (291)
T KOG1679|consen 186 KELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPIAVRLAKLAINLGMEVDIASGLSIEEMCYA 265 (291)
T ss_pred HhHhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCchhhhHHHHHhccCceecccccccHHHHHHH
Confidence 9999999999999999999999999865 5677899999999999999999999999987652 3334456666777
Q ss_pred HHhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 302 IFYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 302 ~~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
+...+.|..||+.+|.|||+|.|++.
T Consensus 266 q~i~t~drLeglaaf~ekr~p~y~G~ 291 (291)
T KOG1679|consen 266 QIIPTKDRLEGLAAFKEKRKPEYKGE 291 (291)
T ss_pred hcCcHHHHHHHHHHHHhhcCCCcCCC
Confidence 77889999999999999999999874
|
|
| >PRK05869 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=364.48 Aligned_cols=206 Identities=28% Similarity=0.500 Sum_probs=187.6
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHH
Q 020093 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (331)
Q Consensus 78 ~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (331)
+++|++||||||++ |+||.+|+.+|.+++++++.|+++++|||||.| ++||+|+|++++....... .......+.++
T Consensus 15 ~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~-~~~~~~~~~~~ 91 (222)
T PRK05869 15 DAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGH-EIFSAGDDMPELRTLSAQE-ADTAARVRQQA 91 (222)
T ss_pred cCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCcCcCcCHHHHhccChhh-HHHHHHHHHHH
Confidence 48899999999986 999999999999999999999999999999998 6999999999875322111 11111123568
Q ss_pred HHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCC
Q 020093 158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT 237 (331)
Q Consensus 158 ~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~ 237 (331)
+.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++.+|++++|..++++++++|++++
T Consensus 92 ~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~ 171 (222)
T PRK05869 92 VDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFD 171 (222)
T ss_pred HHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccc
Q 020093 238 AEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVD 286 (331)
Q Consensus 238 a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~ 286 (331)
|+||+++||||+++|++++.+++.+++++|+..+|.+++.+|+.++..+
T Consensus 172 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~~~~~~ 220 (222)
T PRK05869 172 AEEALALGLIDEMVAPDDVYDAAAAWARRFLDGPPHALAAAKAGISDVY 220 (222)
T ss_pred HHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998754
|
|
| >PRK08272 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=373.06 Aligned_cols=217 Identities=29% Similarity=0.412 Sum_probs=190.6
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~ 144 (331)
...|++|.++. +++|++||||||+++|+||.+|+.+|.++|++++.|++|++|||+|.| ++||+|+||+++......
T Consensus 6 ~~~~~~v~~e~--~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G-~~FcaG~Dl~~~~~~~~~ 82 (302)
T PRK08272 6 LDNLKTMTYEV--TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAG-KGFCAGYDLSAYAEGSSS 82 (302)
T ss_pred cCCCCeEEEEe--ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCC-CCcccCcCHHHHhhcccc
Confidence 45678899999 899999999999999999999999999999999999999999999999 699999999987432110
Q ss_pred c---h-----------------hh----hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeec
Q 020093 145 D---Y-----------------EN----FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200 (331)
Q Consensus 145 ~---~-----------------~~----~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~ 200 (331)
. . .. .......+++..|.++||||||+|||+|+|||++|+++||+|||+++++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~ 162 (302)
T PRK08272 83 GGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGY 162 (302)
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecC
Confidence 0 0 00 0011234567788999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHH
Q 020093 201 TGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKS 280 (331)
Q Consensus 201 pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~ 280 (331)
||+++|.+|+. ..+++++|.++|++|++||++|+|+||+++||||++||+++|.+++.++|++|+..||.+++.+|+
T Consensus 163 pe~~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~~~K~ 239 (302)
T PRK08272 163 PPTRVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLAMVKL 239 (302)
T ss_pred cchhcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99998656642 357889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccc
Q 020093 281 ALNAVDD 287 (331)
Q Consensus 281 ~l~~~~~ 287 (331)
+++..++
T Consensus 240 ~l~~~~~ 246 (302)
T PRK08272 240 AVNSALL 246 (302)
T ss_pred HHHHHHH
Confidence 9998654
|
|
| >PRK08290 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=368.75 Aligned_cols=237 Identities=35% Similarity=0.491 Sum_probs=199.9
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC---
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY--- 143 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~--- 143 (331)
+++.|.++. +++|++||||||+++|+||.+|+.+|.+++++++.|++|++|||||.| ++||+|+|++++.....
T Consensus 2 ~~~~v~~~~--~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G-~~FcaG~Dl~~~~~~~~~~~ 78 (288)
T PRK08290 2 EYEYVRYEV--AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAG-KHFSAGHDLGSGTPGRDRDP 78 (288)
T ss_pred CCceEEEEe--eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CccccCCCcccccccccccc
Confidence 356789998 899999999999999999999999999999999999999999999999 69999999997632110
Q ss_pred ---------------cchh-hhh--hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCc
Q 020093 144 ---------------ADYE-NFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV 205 (331)
Q Consensus 144 ---------------~~~~-~~~--~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~ 205 (331)
.... ... ...+.+++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~l 158 (288)
T PRK08290 79 GPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRM 158 (288)
T ss_pred ccccccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccccc
Confidence 0000 010 0123456678899999999999999999999999999999999999999999999
Q ss_pred cCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcc
Q 020093 206 GSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAV 285 (331)
Q Consensus 206 Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~ 285 (331)
|+ |+ .+++++++++|+.++++|++||+.++|+||+++||||++||.++|++.+.+++++|++.||.+++.+|+.++..
T Consensus 159 Gl-~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~ 236 (288)
T PRK08290 159 GI-PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLRLTKRAVNQT 236 (288)
T ss_pred Cc-Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 98 44 45778899999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ccC--chhHHHHHHHHHHHHh-CChh
Q 020093 286 DDG--HAGLQTLGGDATLIFY-GTEE 308 (331)
Q Consensus 286 ~~~--~~~~~~~~~~~~~~~~-~s~d 308 (331)
.+. .......+.......+ ++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 237 LDAQGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred HhhccHHHHHHHHHHHHHHccccchh
Confidence 542 3344444544444444 4444
|
|
| >PRK08788 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-48 Score=360.28 Aligned_cols=251 Identities=22% Similarity=0.206 Sum_probs=196.7
Q ss_pred CCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhccc-----CCCeeEEEEEeCCCCceeccccccchhc
Q 020093 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARD-----DSSVGVIILTGKGTEAFCSGGDQALRTR 140 (331)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~-----d~~v~~vVl~g~g~~~FcaG~Dl~~~~~ 140 (331)
..|+++.++...+++|++|||| |+++|+||.+|+.+|.+++++++. |++|++|||+|.++++||+|+|++++..
T Consensus 12 ~~~~~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~ 90 (287)
T PRK08788 12 GELSQLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAE 90 (287)
T ss_pred cccCceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhh
Confidence 3445544444338999999996 999999999999999999999998 8999999999994479999999998642
Q ss_pred CCC-cchhhhhh--hhHHHHHHHHH---cCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHH
Q 020093 141 DGY-ADYENFGR--LNVLDLQVQIR---RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGS 214 (331)
Q Consensus 141 ~~~-~~~~~~~~--~~~~~l~~~l~---~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~ 214 (331)
... ........ ..+.+.+..+. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~ 170 (287)
T PRK08788 91 LIRAGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAY 170 (287)
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHH
Confidence 101 11111100 11122233333 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHH
Q 020093 215 SIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQ 293 (331)
Q Consensus 215 ~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~ 293 (331)
++|++++|..+|++|+++|+.++|+||++|||||+++|++++.+++.+++++|+.. |.+...+|+..+...+. ..+..
T Consensus 171 ~~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~-~~~~~a~k~~~~~~~~~~~~~~~ 249 (287)
T PRK08788 171 SFLARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK-LNGWRAMLRARRRVNPLSLEELM 249 (287)
T ss_pred HHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC-ccHHHHHHHHHHhhccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987 66666666666554432 22333
Q ss_pred HHHHHHHHHHhC-ChhHHHHHHHHhc
Q 020093 294 TLGGDATLIFYG-TEEGSEGKTAFVE 318 (331)
Q Consensus 294 ~~~~~~~~~~~~-s~d~~egi~afle 318 (331)
+.+......+.. .+...+-|..|..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (287)
T PRK08788 250 DITEIWVDAALQLEEKDLRTMERLVR 275 (287)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHH
Confidence 334333333333 3445677777764
|
|
| >PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=368.75 Aligned_cols=184 Identities=21% Similarity=0.286 Sum_probs=163.9
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc-chh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA-DYE 147 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~-~~~ 147 (331)
+.|.++. .+++++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.| ++||+|+|++++...... ...
T Consensus 42 ~~v~~e~--~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~G-kaFcAGgDl~~l~~~~~~~~~~ 118 (407)
T PLN02851 42 DQVLVEG--RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSG-RAFCSGADVVSLYHLINEGNVE 118 (407)
T ss_pred CCeEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcCHHHHHhhccccchH
Confidence 5688998 899999999999999999999999999999999999999999999999 799999999987532111 111
Q ss_pred hh--hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHH
Q 020093 148 NF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (331)
Q Consensus 148 ~~--~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 225 (331)
.. .....+.+...|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.|++++|+|++|. .
T Consensus 119 ~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-~ 197 (407)
T PLN02851 119 ECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-L 197 (407)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-H
Confidence 11 11234567778899999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcH
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKL 256 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l 256 (331)
+++|++||++++|+||+++||+|+++|++++
T Consensus 198 g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l 228 (407)
T PLN02851 198 GEYLALTGQKLNGVEMIACGLATHYCLNARL 228 (407)
T ss_pred HHHHHHhCCcCCHHHHHHCCCceeecCHhhH
Confidence 9999999999999999999999999987765
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-48 Score=399.44 Aligned_cols=251 Identities=23% Similarity=0.294 Sum_probs=214.2
Q ss_pred cEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhh
Q 020093 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (331)
Q Consensus 70 ~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (331)
++.++.. +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||+| ++||+|+|++++...........
T Consensus 7 ~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~~~~ 84 (715)
T PRK11730 7 TLQVDWL-EDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAK-DAFIVGADITEFLSLFAAPEEEL 84 (715)
T ss_pred eEEEEEc-CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCC-CccccCcCHHHHhhhccCCHHHH
Confidence 4667631 789999999999999999999999999999999999999999999999 69999999998753111111111
Q ss_pred --hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHH
Q 020093 150 --GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (331)
Q Consensus 150 --~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~ 227 (331)
......+++.+|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|+
T Consensus 85 ~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~ 164 (715)
T PRK11730 85 SQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNAL 164 (715)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHH
Confidence 111245677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhcc------------CHH---------HHHHHHH------
Q 020093 228 EMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRN------------SPT---------AIRVLKS------ 280 (331)
Q Consensus 228 ~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~------------~~~---------a~~~~K~------ 280 (331)
+|+++|++++|+||+++||||+|||++++.+++.++|++|+.. +|. +++.+|+
T Consensus 165 ~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~a~~~~~~~~~~~~~k~~~~~~~ 244 (715)
T PRK11730 165 EWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKARRQPKLEPLKLSKIEAMMSFTTAKGMVAQKA 244 (715)
T ss_pred HHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCccccccCcccccccccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999965 455 4477775
Q ss_pred ------------HHHcccc-CchhHHHHHHHHHHHHhCChhHHHHHHHHhcCCCC
Q 020093 281 ------------ALNAVDD-GHAGLQTLGGDATLIFYGTEEGSEGKTAFVERRRP 322 (331)
Q Consensus 281 ------------~l~~~~~-~~~~~~~~~~~~~~~~~~s~d~~egi~aflekr~p 322 (331)
+++...+ ......+.|.+.+..++.++|++|++++|+++|.-
T Consensus 245 ~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~ 299 (715)
T PRK11730 245 GKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYV 299 (715)
T ss_pred ccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 3454433 23344566777888899999999999999998654
|
|
| >TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-47 Score=358.42 Aligned_cols=204 Identities=28% Similarity=0.430 Sum_probs=181.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhh--hhhhHHHHH
Q 020093 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF--GRLNVLDLQ 158 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~--~~~~~~~l~ 158 (331)
+++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.|+++||+|+|++++........... ....+.+++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~ 117 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV 117 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence 556999999999999999999999999999999999999999999669999999998753211111111 111234677
Q ss_pred HHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCH
Q 020093 159 VQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTA 238 (331)
Q Consensus 159 ~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a 238 (331)
..|..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++++|++++|
T Consensus 118 ~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA 197 (360)
T TIGR03200 118 SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSA 197 (360)
T ss_pred HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcccEecCCCcH------------HHHHHHHHHHHhccCHH--HHHHHHHHHHc
Q 020093 239 EEAEKMGLVNTVVPLEKL------------EQETIKWSREILRNSPT--AIRVLKSALNA 284 (331)
Q Consensus 239 ~eA~~~GLv~~vv~~~~l------------~~~a~~~a~~la~~~~~--a~~~~K~~l~~ 284 (331)
+||+++||||+|+|++++ ++.+.++++.+...+.. ++++.|.+++.
T Consensus 198 ~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 257 (360)
T TIGR03200 198 HKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQ 257 (360)
T ss_pred HHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhc
Confidence 999999999999999888 78888889888888877 88888888877
|
Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=389.65 Aligned_cols=249 Identities=21% Similarity=0.327 Sum_probs=213.6
Q ss_pred cEEEEEeeCCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 70 DIIYEKAVGEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 70 ~v~~~~~~~~~v~~ItLnrp-~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
++.+++. +++|++|||||| +++|+||.+|+.+|.+++++++.|+++|+|||+|.|+++||+|+|++++..........
T Consensus 6 ~~~~~~~-~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~ 84 (708)
T PRK11154 6 AFTLNVR-EDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAE 84 (708)
T ss_pred eEEEEEc-CCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHH
Confidence 3556653 689999999999 69999999999999999999999999999999997657999999999874321111111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCC--ceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
........++.+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|..+|
T Consensus 85 ~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A 164 (708)
T PRK11154 85 ALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTA 164 (708)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHH
Confidence 11112346788999999999999999999999999999999999987 4999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHH-------------HhccCHH--------------------
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSRE-------------ILRNSPT-------------------- 273 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~-------------la~~~~~-------------------- 273 (331)
++|+++|++++|+||+++||||++++++++.+++.++|++ ++..+|.
T Consensus 165 ~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~ 244 (708)
T PRK11154 165 LDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARRPLPVRERLLEGNPLGRALLFKQARKKTLAKTQGN 244 (708)
T ss_pred HHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccCcCCchhhhcccCchhHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999999999999999999999998 5666664
Q ss_pred --HHHHHHHHHHccccC-chhHHHHHHHHHHHHhCChhHHHHHHHHhcC
Q 020093 274 --AIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTEEGSEGKTAFVER 319 (331)
Q Consensus 274 --a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~aflek 319 (331)
+++.+|++++..... .......|.+.+..++.|+|.+|++++|+.+
T Consensus 245 ~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~ 293 (708)
T PRK11154 245 YPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFAT 293 (708)
T ss_pred ChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 688899999886543 3445567778888899999999999999954
|
|
| >PRK06213 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=341.08 Aligned_cols=210 Identities=23% Similarity=0.289 Sum_probs=187.7
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
+.|.++. +++|++|||||| ++|+||.+|+.+|.++++.++ +++++|||+|.| ++||+|+|++++... ......
T Consensus 3 ~~i~~~~--~~~v~~itln~~-~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g-~~F~~G~Dl~~~~~~-~~~~~~ 75 (229)
T PRK06213 3 ELVSYTL--EDGVATITLDDG-KVNALSPAMIDALNAALDQAE--DDRAVVVITGQP-GIFSGGFDLKVMTSG-AQAAIA 75 (229)
T ss_pred ceEEEEe--cCCEEEEEeCCC-CCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCC-CceEcCcCHHHHhcc-hHhHHH
Confidence 3588888 899999999998 469999999999999999988 467999999999 699999999987532 111111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCC-ceeecCCCCccCCCCchHHHHHHHhhCHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~ 227 (331)
. .....+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++++..++++++|...++
T Consensus 76 ~-~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~ 154 (229)
T PRK06213 76 L-LTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQ 154 (229)
T ss_pred H-HHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHH
Confidence 1 122456788899999999999999999999999999999999999 99999999999988888888899999999999
Q ss_pred HHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccc
Q 020093 228 EMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVD 286 (331)
Q Consensus 228 ~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~ 286 (331)
+++++|++++|+||+++||||+|+|++++.+.+.+++++|++.+|.+++.+|+.++...
T Consensus 155 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~ 213 (229)
T PRK06213 155 RAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAHAATKLKVRAAA 213 (229)
T ss_pred HHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998753
|
|
| >KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=333.40 Aligned_cols=260 Identities=26% Similarity=0.350 Sum_probs=217.4
Q ss_pred CCcccEEEEEe-eCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC-
Q 020093 66 TEFTDIIYEKA-VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY- 143 (331)
Q Consensus 66 ~~~~~v~~~~~-~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~- 143 (331)
..|+.+.+.+. .+.-|.++.||||.|+|+||..|+.|+.++|+.+.+||++|+|||+|+| |+||+|+|+..+.....
T Consensus 16 ~s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~G-KhFcaGIDl~~~~~~~~~ 94 (292)
T KOG1681|consen 16 HSYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAG-KHFCAGIDLNDMASDRIL 94 (292)
T ss_pred cccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCC-cceecccCcchhhhhhcc
Confidence 34554555431 1566999999999999999999999999999999999999999999999 79999999876532111
Q ss_pred -cchhhhh------h---hhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchH
Q 020093 144 -ADYENFG------R---LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYG 213 (331)
Q Consensus 144 -~~~~~~~------~---~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~ 213 (331)
...+... + ..+++.+..|.+||||||++|||+|+|||+.|..+||+|+|+++|.|+.-|+.+|+..+.|.
T Consensus 95 ~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGT 174 (292)
T KOG1681|consen 95 QPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGT 174 (292)
T ss_pred ccccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhh
Confidence 0111111 1 12456777899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC-HHHHHHHHHcCCCCCHHHHHhcCcccEecCC-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCch-
Q 020093 214 SSIMSRLVG-PKKAREMWFLARFYTAEEAEKMGLVNTVVPL-EKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHA- 290 (331)
Q Consensus 214 ~~~L~r~vG-~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~- 290 (331)
..+||..|| .+.++++.+|++.|+|.||++.|||.+|+|+ +++...+..+|+.|+.++|.+++.||..++...+...
T Consensus 175 L~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVqgTK~~L~ysrehsv~ 254 (292)
T KOG1681|consen 175 LNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQGTKENLLYSREHSVE 254 (292)
T ss_pred HhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeeechHHHHHHHhhhhhh
Confidence 999999999 8899999999999999999999999999987 7799999999999999999999999999998776432
Q ss_pred hHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCC-CCC
Q 020093 291 GLQTLGGDATLIFYGTEEGSEGKTAFVERRRPD-FLK 326 (331)
Q Consensus 291 ~~~~~~~~~~~~~~~s~d~~egi~aflekr~p~-f~~ 326 (331)
+............+.++|..+++.|-++|++|. |.+
T Consensus 255 ~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~tfsk 291 (292)
T KOG1681|consen 255 ESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTVTFSK 291 (292)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccc
Confidence 222222222333456899999999999999877 764
|
|
| >PLN02988 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-46 Score=359.02 Aligned_cols=213 Identities=25% Similarity=0.363 Sum_probs=187.9
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch-
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY- 146 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~- 146 (331)
...|.++. +++|++||||||+++|+||.+|+.+|.++|+.++.|++|++|||+|.| ++||+|+|++++........
T Consensus 8 ~~~v~~~~--~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G-~~FcAGgDl~~l~~~~~~~~~ 84 (381)
T PLN02988 8 QSQVLVEE--KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHG-RAFCAGGDVAAVVRDIEQGNW 84 (381)
T ss_pred CCceEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCC-CCcccCcCHHHHHhhhcccch
Confidence 34688888 899999999999999999999999999999999999999999999999 69999999998742211110
Q ss_pred h-hhh-hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 147 E-NFG-RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 147 ~-~~~-~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
. ... ....+.+...|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus 85 ~~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~- 163 (381)
T PLN02988 85 RLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF- 163 (381)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-
Confidence 0 000 1112345567899999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcc
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAV 285 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~ 285 (331)
.+++|++||++++|+||+++||||++||++++.+.+.+++ +++..+|.++..+|+.++..
T Consensus 164 ~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~p~~~~~~~~~~~~~ 223 (381)
T PLN02988 164 FGEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSNDPTFASTILDAYTQH 223 (381)
T ss_pred HHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccCHHHHHHHHHHhhcC
Confidence 6999999999999999999999999999999999999998 88888999999999988753
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=378.41 Aligned_cols=241 Identities=22% Similarity=0.350 Sum_probs=205.8
Q ss_pred CCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHhcccCCCeeEEEE-EeCCCCceeccccccchhcCCCcchhhhhhhhHH
Q 020093 78 GEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVL 155 (331)
Q Consensus 78 ~~~v~~ItLnrp-~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl-~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 155 (331)
+++|++|||||| +++|+||.+|+.+|.++|++++.|++|++||| +|.| ++||+|+|++++.................
T Consensus 8 ~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g-~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 86 (699)
T TIGR02440 8 EDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKP-DNFIAGADISMLAACQTAGEAKALAQQGQ 86 (699)
T ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-CceeeccCchhhhccCChhHHHHHHHHHH
Confidence 789999999999 79999999999999999999999999999987 5677 69999999998743211111111111245
Q ss_pred HHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCC--ceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcC
Q 020093 156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLA 233 (331)
Q Consensus 156 ~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG 233 (331)
.++..|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++|..+|++|+++|
T Consensus 87 ~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG 166 (699)
T TIGR02440 87 VLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTG 166 (699)
T ss_pred HHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcC
Confidence 6778899999999999999999999999999999999976 79999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhcCcccEecCCCcHHHHHHHHHH-------------HHhccCHHHHH----------------------HH
Q 020093 234 RFYTAEEAEKMGLVNTVVPLEKLEQETIKWSR-------------EILRNSPTAIR----------------------VL 278 (331)
Q Consensus 234 ~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~-------------~la~~~~~a~~----------------------~~ 278 (331)
+.++|+||+++||||+++|++++.+++.++|+ +++..+|.+.+ .+
T Consensus 167 ~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~~~~~a~~~~ 246 (699)
T TIGR02440 167 KQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPLSLQERLLEGTPLGRALLFDQAAKKTAKKTQGNYPAAERI 246 (699)
T ss_pred CcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCccchhhhcccCchhHHHHHHHHHHHHHHhcccCChhHHHH
Confidence 99999999999999999999999999999998 67777777743 44
Q ss_pred HHHHHcccc-CchhHHHHHHHHHHHHhCChhHHHHHHHHhcC
Q 020093 279 KSALNAVDD-GHAGLQTLGGDATLIFYGTEEGSEGKTAFVER 319 (331)
Q Consensus 279 K~~l~~~~~-~~~~~~~~~~~~~~~~~~s~d~~egi~aflek 319 (331)
|+.++.... ......+.|.+.+..++.|+|.++++.+|+-.
T Consensus 247 ~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~ 288 (699)
T TIGR02440 247 LDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFAT 288 (699)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455666544 23445577888888999999999999999853
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PLN02267 enoyl-CoA hydratase/isomerase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-45 Score=332.19 Aligned_cols=211 Identities=22% Similarity=0.326 Sum_probs=180.5
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCee-EEEEEeCCCCceeccccccchhcCCCcchh-h
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVG-VIILTGKGTEAFCSGGDQALRTRDGYADYE-N 148 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~-~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~-~ 148 (331)
+.+++ +++|++|+||||++ |+|+.+|+.+|.+++++++.|++++ +||++|.| ++||+|+|++++......... .
T Consensus 2 ~~~~~--~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g-~~FsaG~Dl~~~~~~~~~~~~~~ 77 (239)
T PLN02267 2 CTLEK--RGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEG-KFFSNGFDLAWAQAAGSAPSRLH 77 (239)
T ss_pred ceeEe--cCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCC-CceeCCcCHHHHhccccCHHHHH
Confidence 56777 89999999999986 9999999999999999999999875 77789988 599999999876421111111 1
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEe-CCceeecCCCCccCCCCchHHHHHHHhhCHHHH-
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA- 226 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a- 226 (331)
.....+.+++..|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++++++++.+|++++|..++
T Consensus 78 ~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~ 157 (239)
T PLN02267 78 LMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAAR 157 (239)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHH
Confidence 111234567888999999999999999999999999999999998 568999999999996344458899999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCC-CcHHHHHHHHHHHHhcc--CHHHHHHHHHHHHcc
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPL-EKLEQETIKWSREILRN--SPTAIRVLKSALNAV 285 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~--~~~a~~~~K~~l~~~ 285 (331)
++|+++|++++|+||+++||||+++|+ +++.+.+.++|++|++. ++.++..+|+.++..
T Consensus 158 ~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~~~~~~~~~k~~~~~~ 219 (239)
T PLN02267 158 RDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKWNGEVYASIRKSLLPE 219 (239)
T ss_pred HHHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHH
Confidence 699999999999999999999999985 68999999999999987 667899999998763
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=364.81 Aligned_cols=250 Identities=24% Similarity=0.309 Sum_probs=204.3
Q ss_pred cEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhh
Q 020093 70 DIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF 149 (331)
Q Consensus 70 ~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (331)
.+.++.. +++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++...........
T Consensus 7 ~i~~~~~-~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~ 84 (714)
T TIGR02437 7 TIQVTAL-EDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGK-DAFIVGADITEFLGLFALPDAEL 84 (714)
T ss_pred eEEEEEc-cCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CccccCcCHHHHhhcccCCHHHH
Confidence 4667642 689999999999999999999999999999999999999999999999 69999999998753111111111
Q ss_pred -h-hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHH
Q 020093 150 -G-RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (331)
Q Consensus 150 -~-~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~ 227 (331)
. .....+++..|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|+
T Consensus 85 ~~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~ 164 (714)
T TIGR02437 85 IQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNAL 164 (714)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHH
Confidence 1 11235678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccC--------H----------HH---HHHHHHH-----
Q 020093 228 EMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNS--------P----------TA---IRVLKSA----- 281 (331)
Q Consensus 228 ~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~--------~----------~a---~~~~K~~----- 281 (331)
+|+++|++++|+||+++||||+++|.+++.+.+.++++++.... + .. .....+.
T Consensus 165 ~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (714)
T TIGR02437 165 EWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAKRQPKLEPLKLSKIEAMMSFTTAKGMVAQVA 244 (714)
T ss_pred HHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCcccccCCCCcccccccchHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998754320 0 00 1111110
Q ss_pred -------------HHcccc-CchhHHHHHHHHHHHHhCChhHHHHHHHHhcCCC
Q 020093 282 -------------LNAVDD-GHAGLQTLGGDATLIFYGTEEGSEGKTAFVERRR 321 (331)
Q Consensus 282 -------------l~~~~~-~~~~~~~~~~~~~~~~~~s~d~~egi~aflekr~ 321 (331)
+....+ ........|.+.+..++.|++.+..+..|+.+|.
T Consensus 245 ~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~ 298 (714)
T TIGR02437 245 GPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQY 298 (714)
T ss_pred cCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHh
Confidence 111111 1234456788889999999999999999996543
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-43 Score=310.16 Aligned_cols=252 Identities=26% Similarity=0.377 Sum_probs=224.2
Q ss_pred CCCcccEEEEEeeCCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC
Q 020093 65 GTEFTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLn-rp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~ 143 (331)
...+..+.+++ ++++.+|.+| ||++.|+|+.+++.++..+|..+.+|+++..+|++|.| ++||+|.|+..+.....
T Consensus 3 ~~~~~~~vv~~--~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G-~~f~sG~Df~~~~~~~~ 79 (266)
T KOG0016|consen 3 AMRYREIVVTR--ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNG-SYFCSGLDFSPFAKALD 79 (266)
T ss_pred cccccceEEEe--cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCc-cEEeeccccchhhhcCC
Confidence 34567899999 9999999999 99999999999999999999999999999999999999 69999999997754322
Q ss_pred cchhhh--hh----hhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHH
Q 020093 144 ADYENF--GR----LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIM 217 (331)
Q Consensus 144 ~~~~~~--~~----~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L 217 (331)
.+.... .. ..+..+...+..+|||+||.|||+|+|.|+.+.-.||+++|+|+++|..|++++|..|+|+.++.|
T Consensus 80 ~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~ 159 (266)
T KOG0016|consen 80 DDANEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTL 159 (266)
T ss_pred CcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeee
Confidence 111111 11 112236778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHH
Q 020093 218 SRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLG 296 (331)
Q Consensus 218 ~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~ 296 (331)
|+++|...|.||++.|++++|+||.+.|||+++++.+.+.++++..++++++.+|.+++..|++++.... ......+.|
T Consensus 160 p~imG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~an~~E 239 (266)
T KOG0016|consen 160 PKIMGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLLGMKKLLRSNIKEELIKANEEE 239 (266)
T ss_pred hHhhchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997542 334455778
Q ss_pred HHHHHHHhCChhHHHHHHHHhcC
Q 020093 297 GDATLIFYGTEEGSEGKTAFVER 319 (331)
Q Consensus 297 ~~~~~~~~~s~d~~egi~aflek 319 (331)
.......|.++|+.+.+.+|+.|
T Consensus 240 ~~~l~~~W~s~e~~~~~~~~~~~ 262 (266)
T KOG0016|consen 240 CNVLLKQWVSAECLARFKQYLSK 262 (266)
T ss_pred HHHHHhhccChHHHHHHHHHhcc
Confidence 88888999999999999999976
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=354.98 Aligned_cols=250 Identities=20% Similarity=0.296 Sum_probs=200.4
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHhcccCCCeeEE-EEEeCCCCceeccccccchhcCCCc
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVI-ILTGKGTEAFCSGGDQALRTRDGYA 144 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~-~~Nal~~~~~~eL~~al~~~~~d~~v~~v-Vl~g~g~~~FcaG~Dl~~~~~~~~~ 144 (331)
.++++.+++ +++|++||||||+ +.|+||.+|+.+|.+++++++.|++|++| |++|.| ++||+|+||+++......
T Consensus 11 ~~~~~~~~~--~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g-~~F~aG~Dl~~~~~~~~~ 87 (737)
T TIGR02441 11 ARTHRHYEV--KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKP-GSFVAGADIQMIAACKTA 87 (737)
T ss_pred CCCeEEEEE--ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCC-CcceeCcCHHHHhccCCh
Confidence 345688988 8999999999998 58999999999999999999999999965 579998 699999999987532111
Q ss_pred chhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCC--ceeecCCCCccCCCCchHHHHHHHhhC
Q 020093 145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPKVGSFDAGYGSSIMSRLVG 222 (331)
Q Consensus 145 ~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~L~r~vG 222 (331)
...........+++.+|.++||||||+|||+|+|||++|+++||||||+++ ++|++||+++|++|++|++++|+|++|
T Consensus 88 ~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG 167 (737)
T TIGR02441 88 QEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTG 167 (737)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhC
Confidence 111111123457888999999999999999999999999999999999987 589999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHhcCcccEecCC-------------CcHHHHHHHHHHHHhccC----------H-------
Q 020093 223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPL-------------EKLEQETIKWSREILRNS----------P------- 272 (331)
Q Consensus 223 ~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~-------------~~l~~~a~~~a~~la~~~----------~------- 272 (331)
..+|++|+++|++++|+||+++||||+|||+ +++.+.+.+++++++... +
T Consensus 168 ~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (737)
T TIGR02441 168 VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVM 247 (737)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhc
Confidence 9999999999999999999999999999987 457788888887765321 0
Q ss_pred -------HHHHHHHHHHHcc------------------cc-CchhHHHHHHHHHHHHhCChhHHHHHHHHhcC
Q 020093 273 -------TAIRVLKSALNAV------------------DD-GHAGLQTLGGDATLIFYGTEEGSEGKTAFVER 319 (331)
Q Consensus 273 -------~a~~~~K~~l~~~------------------~~-~~~~~~~~~~~~~~~~~~s~d~~egi~aflek 319 (331)
..+...++.++.. .. ........|.+.+..+..|++.+.-+..|+-.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~ 320 (737)
T TIGR02441 248 TNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQ 320 (737)
T ss_pred ccchhHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 0111111111111 11 11234567888899999999999999998843
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=294.62 Aligned_cols=252 Identities=28% Similarity=0.368 Sum_probs=216.5
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhh
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 150 (331)
.+++. +++|-.|+||+|+|+|.|+..|+.+|.+.|....+..++|+|||+..| +.||+|.||+++......+.....
T Consensus 34 g~~~~--~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~G-kifSaGH~LKELt~e~g~d~haev 110 (287)
T KOG1682|consen 34 GLVKE--HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQG-KIFSAGHNLKELTNEPGSDIHAEV 110 (287)
T ss_pred ccccc--ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCC-ccccccccHHHhhcCccchHHHHH
Confidence 44555 789999999999999999999999999999998888999999999999 699999999998754322222222
Q ss_pred hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHH
Q 020093 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW 230 (331)
Q Consensus 151 ~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ 230 (331)
.....+++.-|+++|.|||+.|||+|..+|+.|...||++||+++++|..|..++|++-...| .-|.|.+....+.+|+
T Consensus 111 Fqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPG-vAlaRavpRkva~~ML 189 (287)
T KOG1682|consen 111 FQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPG-VALARAVPRKVAAYML 189 (287)
T ss_pred HHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcc-hhHhhhcchhHHHHHH
Confidence 233457888999999999999999999999999999999999999999999999998765543 4578999999999999
Q ss_pred HcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHHHHHHhCChhH
Q 020093 231 FLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATLIFYGTEEG 309 (331)
Q Consensus 231 ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~s~d~ 309 (331)
+||.+++++||+.-|||+++||.++|+.++++++..|-..+...+..-|+.+..... ...+......+.+..-++-.|.
T Consensus 190 ~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~slgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~ 269 (287)
T KOG1682|consen 190 MTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVISLGKEFYYKQLAMSQAEAFSAAQEKMCENFQLGDT 269 (287)
T ss_pred HhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccch
Confidence 999999999999999999999999999999999999999999999999998876443 2223333344455556778999
Q ss_pred HHHHHHHhcCCCCCCCC
Q 020093 310 SEGKTAFVERRRPDFLK 326 (331)
Q Consensus 310 ~egi~aflekr~p~f~~ 326 (331)
+|||.+|++||+|+|+.
T Consensus 270 kegiasf~~krp~~~~h 286 (287)
T KOG1682|consen 270 KEGIASFFEKRPPNWKH 286 (287)
T ss_pred HHHHHHHhccCCCCcCC
Confidence 99999999999999975
|
|
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=345.53 Aligned_cols=207 Identities=19% Similarity=0.244 Sum_probs=179.7
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHhcc-cCCCeeEEEEEeCCCCceeccc
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPD----------RRNAFRPHTVKELIRAFNDAR-DDSSVGVIILTGKGTEAFCSGG 133 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~----------~~Nal~~~~~~eL~~al~~~~-~d~~v~~vVl~g~g~~~FcaG~ 133 (331)
+++|+++.+++ +++|++||||||+ |+|+||.+|+.+|.++|++++ .|+++|+|||||.|+++||+|+
T Consensus 7 ~~~~~~v~~~~--~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~ 84 (546)
T TIGR03222 7 PSQYRHWKLTF--DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGA 84 (546)
T ss_pred CCCCceEEEEe--eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCc
Confidence 55678899999 8999999999976 999999999999999999999 7899999999997547999999
Q ss_pred cccchhcCCCcchhhhhh---hhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCC--ceeecCCCC-ccC
Q 020093 134 DQALRTRDGYADYENFGR---LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPK-VGS 207 (331)
Q Consensus 134 Dl~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~--a~f~~pe~~-~Gl 207 (331)
|++++............. .....+...+..+||||||+|||+|+|||++|+++||+||++++ ++|++||++ +|+
T Consensus 85 DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl 164 (546)
T TIGR03222 85 NIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGV 164 (546)
T ss_pred CHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCc
Confidence 999874311100001100 01123455678999999999999999999999999999999986 799999997 999
Q ss_pred CCCchHHHHHH--HhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHH
Q 020093 208 FDAGYGSSIMS--RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPT 273 (331)
Q Consensus 208 ~p~~g~~~~L~--r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~ 273 (331)
+|++|++.+|+ +++|..+|++|+++|+.++|+||++|||||+|||++++++++.++|++|+..||.
T Consensus 165 ~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~ 232 (546)
T TIGR03222 165 LPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSDR 232 (546)
T ss_pred CCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCCC
Confidence 99999999997 7999999999999999999999999999999999999999999999999998773
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=339.79 Aligned_cols=208 Identities=20% Similarity=0.245 Sum_probs=179.1
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHhcc-cCCCeeEEEEEeCCCCceeccc
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRP-------D---RRNAFRPHTVKELIRAFNDAR-DDSSVGVIILTGKGTEAFCSGG 133 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp-------~---~~Nal~~~~~~eL~~al~~~~-~d~~v~~vVl~g~g~~~FcaG~ 133 (331)
...|+++.++. +++|++|||||| + ++|+||.+|+.+|.+++++++ .|++|++|||+|.|+++||+|+
T Consensus 11 ~~~~~~~~~e~--~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~ 88 (550)
T PRK08184 11 PSQYRHWKLSF--DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGA 88 (550)
T ss_pred CCCCceEEEEe--eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCcc
Confidence 34578899999 899999999965 4 899999999999999999999 7899999999998657999999
Q ss_pred cccchhcCCCcchhhhhh---hhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCC--ceeecCCCC-ccC
Q 020093 134 DQALRTRDGYADYENFGR---LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPK-VGS 207 (331)
Q Consensus 134 Dl~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~--a~f~~pe~~-~Gl 207 (331)
|++++............. .....+...+.++||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|+
T Consensus 89 DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl 168 (550)
T PRK08184 89 NIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGV 168 (550)
T ss_pred CHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhcccc
Confidence 999864321110000100 01112445678999999999999999999999999999999987 899999997 999
Q ss_pred CCCchHHHHHH--HhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHH
Q 020093 208 FDAGYGSSIMS--RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTA 274 (331)
Q Consensus 208 ~p~~g~~~~L~--r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a 274 (331)
+|++|++++|+ +++|..+|++|+++|+.++|+||++|||||++||++++.+++.++|++|+..||..
T Consensus 169 ~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~~~~ 237 (550)
T PRK08184 169 LPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAASDRP 237 (550)
T ss_pred CCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999998 78999999999999999999999999999999999999999999999999887654
|
|
| >cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=297.42 Aligned_cols=194 Identities=40% Similarity=0.639 Sum_probs=174.7
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch-hhh
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY-ENF 149 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~-~~~ 149 (331)
+.+++ +++|++|+||+|++.|++|.+|+++|.++++.++.|+++++|||+|.| +.||+|+|++++........ ...
T Consensus 1 i~~~~--~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~-~~Fs~G~dl~~~~~~~~~~~~~~~ 77 (195)
T cd06558 1 VLVER--DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAG-KAFCAGADLKELAALSDAGEEARA 77 (195)
T ss_pred CEEEE--ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceEeCcCHHHHhcccccchhHHH
Confidence 35667 789999999999999999999999999999999999999999999997 69999999998764332211 011
Q ss_pred hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHH
Q 020093 150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREM 229 (331)
Q Consensus 150 ~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l 229 (331)
....+.+++..+..++|||||+|||+|+|+|++++++||+||++++++|++||+++|++|++|++++|++++|.++++++
T Consensus 78 ~~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~ 157 (195)
T cd06558 78 FIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARAREL 157 (195)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHH
Confidence 12345678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHH
Q 020093 230 WFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREI 267 (331)
Q Consensus 230 ~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l 267 (331)
+++|+.++++||+++|||+++++.+++.+++.++++++
T Consensus 158 ~l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~~~ 195 (195)
T cd06558 158 LLTGRRISAEEALELGLVDEVVPDEELLAAALELARRL 195 (195)
T ss_pred HHcCCccCHHHHHHcCCCCeecChhHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999988763
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. |
| >KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=302.53 Aligned_cols=256 Identities=22% Similarity=0.276 Sum_probs=212.6
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc---
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD--- 145 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~--- 145 (331)
..|+++. .++..+||||||+.+||||.+|...+...|..++.++.+++||+.|.|+++||+|+|++.........
T Consensus 38 ~~VL~e~--~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~ 115 (401)
T KOG1684|consen 38 DQVLVEG--KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETP 115 (401)
T ss_pred CceEEec--CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCch
Confidence 4699999 99999999999999999999999999999999999999999999999889999999998654321111
Q ss_pred hhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHH
Q 020093 146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (331)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 225 (331)
.........+.+...|.++.||.||.++|..||||++|+++.-||||+|++.|.+||+.+|++|+.|++++|+|+.| ..
T Consensus 116 ~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~l 194 (401)
T KOG1684|consen 116 EVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YL 194 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HH
Confidence 11111234567888999999999999999999999999999999999999999999999999999999999999999 68
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHH----------------------------------------------
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQE---------------------------------------------- 259 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~---------------------------------------------- 259 (331)
+.+|.|||.++++.||+..||.++.|+.++|...
T Consensus 195 g~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs 274 (401)
T KOG1684|consen 195 GLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFS 274 (401)
T ss_pred HHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhc
Confidence 9999999999999999999999999987554221
Q ss_pred -----------------------HHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHHHHHHhCChhHHHHHHH
Q 020093 260 -----------------------TIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATLIFYGTEEGSEGKTA 315 (331)
Q Consensus 260 -----------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~s~d~~egi~a 315 (331)
|.+-.+.|...+|.++..+-+.+..... ...+..-.|+.....+..+.||.||++|
T Consensus 275 ~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA 354 (401)
T KOG1684|consen 275 ANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRGDFCEGVRA 354 (401)
T ss_pred cccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence 2223334556788888888888775432 2233445566666667789999999999
Q ss_pred Hh--cCCCCCCCCC
Q 020093 316 FV--ERRRPDFLKF 327 (331)
Q Consensus 316 fl--ekr~p~f~~~ 327 (331)
-| ..+.|+|+..
T Consensus 355 ~LIDKd~~PKW~p~ 368 (401)
T KOG1684|consen 355 VLIDKDQNPKWDPA 368 (401)
T ss_pred eeecCCcCCCCCCc
Confidence 98 3488999864
|
|
| >cd07014 S49_SppA Signal peptide peptidase A | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-21 Score=169.48 Aligned_cols=144 Identities=19% Similarity=0.228 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccc
Q 020093 98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (331)
Q Consensus 98 ~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~ 177 (331)
-.+.+|.++|+++++|++|++|||++ ||.|+|+.... .+.+++..+.+++|||||+|+|.|.
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~-----~~~gg~~~~~~-------------~~~~~i~~~~~~~kpVia~v~G~a~ 83 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV-----NSPGGSVTASE-------------VIRAELAAARAAGKPVVASGGGNAA 83 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe-----eCCCcCHHHHH-------------HHHHHHHHHHhCCCCEEEEECCchh
Confidence 35689999999999999999999986 67888876421 2345667788899999999999999
Q ss_pred cchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHH--------HHHHhhC--HHHHHHHHHcCCCCCHHHHHhcCcc
Q 020093 178 GGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSS--------IMSRLVG--PKKAREMWFLARFYTAEEAEKMGLV 247 (331)
Q Consensus 178 GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~--------~L~r~vG--~~~a~~l~ltG~~~~a~eA~~~GLv 247 (331)
|+|+.|+++||+++++++++|+++++..+..+...... .+++..| ....++++..|+.++|+||++.|||
T Consensus 84 g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLV 163 (177)
T cd07014 84 SGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLV 163 (177)
T ss_pred HHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCc
Confidence 99999999999999999999999877666322111111 3455555 7788999999999999999999999
Q ss_pred cEecCCCcHHHH
Q 020093 248 NTVVPLEKLEQE 259 (331)
Q Consensus 248 ~~vv~~~~l~~~ 259 (331)
|++.+.+++.+.
T Consensus 164 D~v~~~~e~~~~ 175 (177)
T cd07014 164 DSLGSFDDAVAK 175 (177)
T ss_pred ccCCCHHHHHHH
Confidence 999988776543
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p |
| >cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=165.42 Aligned_cols=152 Identities=22% Similarity=0.257 Sum_probs=120.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHH
Q 020093 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ 160 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (331)
|++|.|+ ..++..+...+.+.|+.+++|+ ++.|+|.=.- .|+++.. ...++..
T Consensus 1 ~~vv~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InS-----pGG~v~~----------------~~~i~~~ 53 (187)
T cd07020 1 VYVLEIN-----GAITPATADYLERAIDQAEEGG-ADALIIELDT-----PGGLLDS----------------TREIVQA 53 (187)
T ss_pred CEEEEEe-----eEEChHHHHHHHHHHHHHHhCC-CCEEEEEEEC-----CCCCHHH----------------HHHHHHH
Confidence 3567776 3477788889999999998665 7888875322 3555432 1245567
Q ss_pred HHcCCCcEEEEEc---CccccchhhhhhcccEEEEeCCceeecCCCCccCCCCc--------------hHHHHHHHhhCH
Q 020093 161 IRRLPKPVIAMVA---GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAG--------------YGSSIMSRLVGP 223 (331)
Q Consensus 161 l~~~~kPvIAav~---G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~--------------g~~~~L~r~vG~ 223 (331)
|..+||||||+|+ |+|+|||+.|+++||++|++++++|+++++..+..+.. .....+++.+|.
T Consensus 54 l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~ 133 (187)
T cd07020 54 ILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGR 133 (187)
T ss_pred HHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7889999999999 99999999999999999999999999999985544332 234578888897
Q ss_pred --HHHHHHHHcCCCCCHHHHHhcCcccEecCCC-cHHHH
Q 020093 224 --KKAREMWFLARFYTAEEAEKMGLVNTVVPLE-KLEQE 259 (331)
Q Consensus 224 --~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~-~l~~~ 259 (331)
.++++++++|+.|+++||+++||||++++++ ++...
T Consensus 134 ~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~ 172 (187)
T cd07020 134 NAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKK 172 (187)
T ss_pred CHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHH
Confidence 6899999999999999999999999999886 55543
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c |
| >cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-17 Score=148.39 Aligned_cols=145 Identities=18% Similarity=0.221 Sum_probs=105.4
Q ss_pred CCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcC
Q 020093 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (331)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G 174 (331)
-+..++.+|.++|+.+..|++|++|||+ .||+|+|+..+. .+.+.+..++.++|||||+++|
T Consensus 18 ~~~~~~~~l~~~l~~a~~d~~v~~ivL~-----~~s~Gg~~~~~~-------------~~~~~l~~~~~~~kpVia~v~g 79 (211)
T cd07019 18 QGNVGGDTTAAQIRDARLDPKVKAIVLR-----VNSPGGSVTASE-------------VIRAELAAARAAGKPVVVSAGG 79 (211)
T ss_pred CCccCHHHHHHHHHHHhhCCCceEEEEE-----EcCCCcCHHHHH-------------HHHHHHHHHHhCCCCEEEEECC
Confidence 3455789999999999999999999996 799999997542 1234566788899999999999
Q ss_pred ccccchhhhhhcccEEEEeCCceeecCC------------CCccCCC---CchH--------------HHHHHHhhC---
Q 020093 175 YAVGGGHVLHMVCDLTIAADNAIFGQTG------------PKVGSFD---AGYG--------------SSIMSRLVG--- 222 (331)
Q Consensus 175 ~a~GgG~~Lal~cD~~ia~~~a~f~~pe------------~~~Gl~p---~~g~--------------~~~L~r~vG--- 222 (331)
.|.|+|+.|+++||++++++++.|+... .++|+-+ -.++ -..+...+.
T Consensus 80 ~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~ 159 (211)
T cd07019 80 AAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGY 159 (211)
T ss_pred eehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887533 1223211 0100 011111111
Q ss_pred -------------HHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHH
Q 020093 223 -------------PKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLE 257 (331)
Q Consensus 223 -------------~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~ 257 (331)
.....+-+..|..++++||++.||||++...++..
T Consensus 160 ~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~ 207 (211)
T cd07019 160 KRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAV 207 (211)
T ss_pred HHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCCHHHHH
Confidence 01123345678999999999999999997655543
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te |
| >cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.8e-16 Score=138.38 Aligned_cols=150 Identities=22% Similarity=0.213 Sum_probs=102.3
Q ss_pred cCCCCCCCC-CHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCC
Q 020093 87 NRPDRRNAF-RPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLP 165 (331)
Q Consensus 87 nrp~~~Nal-~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 165 (331)
++|...|++ +..++.+|.++|+++++|++|++|||+. +|.|+++... ..+.+.+..+.. +
T Consensus 13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~-----~s~gg~~~~~-------------~~l~~~l~~~~~-~ 73 (214)
T cd07022 13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI-----DSPGGEVAGV-------------FELADAIRAARA-G 73 (214)
T ss_pred CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE-----eCCCCcHHHH-------------HHHHHHHHHHhc-C
Confidence 456655654 5689999999999999999999999965 4556655321 012233333444 5
Q ss_pred CcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCC------------Cc--------------hHH----H
Q 020093 166 KPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFD------------AG--------------YGS----S 215 (331)
Q Consensus 166 kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p------------~~--------------g~~----~ 215 (331)
|||||+++|.|.|+|+.|+++||++++++++.|+...+....+. .. ..+ .
T Consensus 74 KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re 153 (214)
T cd07022 74 KPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARA 153 (214)
T ss_pred CCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHH
Confidence 99999999999999999999999999999999876432222110 00 000 0
Q ss_pred HHHHhh-----------------CHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHH
Q 020093 216 IMSRLV-----------------GPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLE 257 (331)
Q Consensus 216 ~L~r~v-----------------G~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~ 257 (331)
.+..++ .....++++ |+.+++++|++.||||++...+++.
T Consensus 154 ~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~ 210 (214)
T cd07022 154 RLQAEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDAL 210 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHH
Confidence 011111 122234444 9999999999999999998665543
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. |
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-16 Score=160.17 Aligned_cols=177 Identities=18% Similarity=0.246 Sum_probs=133.4
Q ss_pred CCCEEEEEEcCCCC--CCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHH
Q 020093 78 GEGIAKITINRPDR--RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVL 155 (331)
Q Consensus 78 ~~~v~~ItLnrp~~--~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 155 (331)
++.|++|+++.+-. .|..+....+.+.+.|+++..|++|++|||+-+.+ |++... ...+.
T Consensus 307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSp-----GGs~~a-------------se~i~ 368 (584)
T TIGR00705 307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSP-----GGSVFA-------------SEIIR 368 (584)
T ss_pred CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCC-----CCCHHH-------------HHHHH
Confidence 67899999997642 34444445678888999999999999999997543 332211 01123
Q ss_pred HHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCcee------ecCC------CCccCCCCchHHHHHHH----
Q 020093 156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF------GQTG------PKVGSFDAGYGSSIMSR---- 219 (331)
Q Consensus 156 ~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f------~~pe------~~~Gl~p~~g~~~~L~r---- 219 (331)
+.+..+...+|||||.++|.|.+||+.|+++||.++|++.+.+ +.+. .++|+.++...+..+.+
T Consensus 369 ~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~ 448 (584)
T TIGR00705 369 RELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLL 448 (584)
T ss_pred HHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCC
Confidence 3445667788999999999999999999999999999999987 4442 47787766554443332
Q ss_pred ------------------------hhCHHH-----HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhcc
Q 020093 220 ------------------------LVGPKK-----AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRN 270 (331)
Q Consensus 220 ------------------------~vG~~~-----a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~ 270 (331)
.|+..+ +.+.+.+|+.++++||+++||||++. .+ ++|.+.|++++..
T Consensus 449 ~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~la~~ 524 (584)
T TIGR00705 449 RPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKLAHC 524 (584)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHHcCC
Confidence 566666 77889999999999999999999994 44 7788889999988
Q ss_pred -CHHHHH
Q 020093 271 -SPTAIR 276 (331)
Q Consensus 271 -~~~a~~ 276 (331)
++.++.
T Consensus 525 ~~~~~v~ 531 (584)
T TIGR00705 525 REQWSVE 531 (584)
T ss_pred CCCceEE
Confidence 555544
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-15 Score=128.88 Aligned_cols=135 Identities=26% Similarity=0.291 Sum_probs=105.0
Q ss_pred CCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcC
Q 020093 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (331)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G 174 (331)
++..++.+|.+.|+.++.|+++++|+|.. .|.|+|+.. ...+...|..++||||+.++|
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~-----~s~Gg~~~~----------------~~~i~~~l~~~~kpvva~~~g 66 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV-----NTPGGRVDA----------------GMNIVDALQASRKPVIAYVGG 66 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE-----ECCCcCHHH----------------HHHHHHHHHHhCCCEEEEECC
Confidence 66788999999999999999999999965 456776542 124556777888999999999
Q ss_pred ccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHH-------------HHHHHhh------CHHHHHHHHHcCCC
Q 020093 175 YAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGS-------------SIMSRLV------GPKKAREMWFLARF 235 (331)
Q Consensus 175 ~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~-------------~~L~r~v------G~~~a~~l~ltG~~ 235 (331)
.|.++|+.|+++||.|++.+++.|++.++..+.....+.. ..+...+ ......+++..|..
T Consensus 67 ~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~ 146 (161)
T cd00394 67 QAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLV 146 (161)
T ss_pred hhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcE
Confidence 9999999999999999999999999988776643221000 1111111 23346777888999
Q ss_pred CCHHHHHhcCcccEe
Q 020093 236 YTAEEAEKMGLVNTV 250 (331)
Q Consensus 236 ~~a~eA~~~GLv~~v 250 (331)
++++||+++||||+|
T Consensus 147 ~~a~eA~~~GLvD~i 161 (161)
T cd00394 147 LTAQEALEYGLVDAL 161 (161)
T ss_pred EcHHHHHHcCCcCcC
Confidence 999999999999975
|
Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec |
| >cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-15 Score=132.81 Aligned_cols=152 Identities=25% Similarity=0.345 Sum_probs=107.9
Q ss_pred EEEEEEcCCCCCCCCC---HHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHH
Q 020093 81 IAKITINRPDRRNAFR---PHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~---~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (331)
|++|.++-+ ++ ..++.+|.++|+.++.|+++++|||++ +|.|+|+.... .+.+.
T Consensus 2 v~vi~i~g~-----i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~-----~s~Gg~~~~~~-------------~i~~~ 58 (208)
T cd07023 2 IAVIDIEGT-----ISDGGGIGADSLIEQLRKAREDDSVKAVVLRI-----NSPGGSVVASE-------------EIYRE 58 (208)
T ss_pred EEEEEEEEE-----EcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEE-----ECCCCCHHHHH-------------HHHHH
Confidence 566666633 33 789999999999999999999999987 46788876421 13455
Q ss_pred HHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCC------------ccCCCCch-------------
Q 020093 158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPK------------VGSFDAGY------------- 212 (331)
Q Consensus 158 ~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~------------~Gl~p~~g------------- 212 (331)
+..+..++|||||+++|.|.|+|+.|+++||++++++++.|+...+. +|+-+...
T Consensus 59 i~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~ 138 (208)
T cd07023 59 IRRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDR 138 (208)
T ss_pred HHHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCC
Confidence 66788889999999999999999999999999999999998754321 12111000
Q ss_pred -----HHHHHHHhhCH----------------HHHHHHHHcCCCCCHHHHHhcCcccEecCCCc
Q 020093 213 -----GSSIMSRLVGP----------------KKAREMWFLARFYTAEEAEKMGLVNTVVPLEK 255 (331)
Q Consensus 213 -----~~~~L~r~vG~----------------~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~ 255 (331)
....+..++.. ....+-++.|..+++++|++.||||++...++
T Consensus 139 ~~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~a~~A~~~gLiD~i~~~~~ 202 (208)
T cd07023 139 PLTEEERAILQALVDDIYDQFVDVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGLDD 202 (208)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCcEEEHHHHHHcCCCcccCCHHH
Confidence 00111111110 01123356788999999999999999976544
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad |
| >cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.5e-14 Score=121.52 Aligned_cols=129 Identities=22% Similarity=0.313 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccc
Q 020093 98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (331)
Q Consensus 98 ~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~ 177 (331)
.+...+.+.|+.++.++.+ .+.|.+.| +++.. ...+...|..++||||+.++|.|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspG-------G~~~~----------------~~~i~~~i~~~~~pvi~~v~g~a~ 70 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPG-------GDVFA----------------GLAIYNALKRHKGKVTVKIDGLAA 70 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCC-------CCHHH----------------HHHHHHHHHhcCCCEEEEEcchHH
Confidence 5678888899998887433 34444444 33221 124666788899999999999999
Q ss_pred cchhhhhhcccEEEEeCCceeecCCCCccCCCCchH---------------HHHHHHhhC--HHHHHHHHHcCCCCCHHH
Q 020093 178 GGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYG---------------SSIMSRLVG--PKKAREMWFLARFYTAEE 240 (331)
Q Consensus 178 GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~---------------~~~L~r~vG--~~~a~~l~ltG~~~~a~e 240 (331)
|+|+.|+++||+|+++++++|++.....|..+.... ...+.+..| .....+++..+..++++|
T Consensus 71 s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~e 150 (160)
T cd07016 71 SAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQE 150 (160)
T ss_pred hHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHH
Confidence 999999999999999999999998777665433211 233777788 677788888888999999
Q ss_pred HHhcCcccEe
Q 020093 241 AEKMGLVNTV 250 (331)
Q Consensus 241 A~~~GLv~~v 250 (331)
|+++||||+|
T Consensus 151 A~~~GliD~v 160 (160)
T cd07016 151 AVELGFADEI 160 (160)
T ss_pred HHHcCCCCcC
Confidence 9999999985
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a |
| >TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.4e-14 Score=126.81 Aligned_cols=153 Identities=21% Similarity=0.321 Sum_probs=105.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHH
Q 020093 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ 160 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (331)
|++|+++-+ ++ ....+|.++|+.+.+|+++++|||++. |.|+|+.. ..++...
T Consensus 2 v~vi~i~g~-----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~-----s~Gg~~~~----------------~~~l~~~ 54 (207)
T TIGR00706 2 IAILPVSGA-----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN-----SPGGTVVA----------------SEEIYEK 54 (207)
T ss_pred EEEEEEEEE-----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec-----CCCCCHHH----------------HHHHHHH
Confidence 566666643 22 345789999999999999999999874 56776642 1244556
Q ss_pred HHcCC--CcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCc------------cCCC------------Cch--
Q 020093 161 IRRLP--KPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV------------GSFD------------AGY-- 212 (331)
Q Consensus 161 l~~~~--kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~------------Gl~p------------~~g-- 212 (331)
|.+++ |||||.++|.|.|+|+.|+++||.+++++++.|+...+.. |+-+ ...
T Consensus 55 i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~ 134 (207)
T TIGR00706 55 LKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRE 134 (207)
T ss_pred HHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCC
Confidence 66776 9999999999999999999999999999999887643322 2110 000
Q ss_pred ----HHHHHHHh-----------------hCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHH
Q 020093 213 ----GSSIMSRL-----------------VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETI 261 (331)
Q Consensus 213 ----~~~~L~r~-----------------vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~ 261 (331)
.-..+.+. +...... -++.|+.+++++|++.||||++...+++.+.+.
T Consensus 135 ~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~-~~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~ 203 (207)
T TIGR00706 135 LTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVK-KFADGRVFTGRQALKLRLVDKLGTEDDALKWLA 203 (207)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH-HHhcCCcccHHHHHHcCCCcccCCHHHHHHHHH
Confidence 00111111 1122222 356789999999999999999987666554433
|
The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively. |
| >cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.1e-13 Score=121.05 Aligned_cols=146 Identities=21% Similarity=0.167 Sum_probs=104.0
Q ss_pred CCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEc
Q 020093 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (331)
Q Consensus 94 al~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~ 173 (331)
.-+..++.+|.++|+++..|++|++|||+..++ .| ++.++.++ .+.+..+...+|||||.++
T Consensus 25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~-gg-~~~~~~el----------------~~~i~~~~~~~kpVia~~~ 86 (222)
T cd07018 25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGL-SG-GLAKLEEL----------------RQALERFRASGKPVIAYAD 86 (222)
T ss_pred CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCC-CC-CHHHHHHH----------------HHHHHHHHHhCCeEEEEeC
Confidence 345678899999999999999999999999885 55 55555432 3445566778999999999
Q ss_pred CccccchhhhhhcccEEEEeCCceeecCCCCcc------------CCC---------CchHHH-----------HHHHhh
Q 020093 174 GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVG------------SFD---------AGYGSS-----------IMSRLV 221 (331)
Q Consensus 174 G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~G------------l~p---------~~g~~~-----------~L~r~v 221 (331)
| |.+||+.|+++||.+++.+.+.|+...+... +-+ ..+..+ .+..++
T Consensus 87 ~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l 165 (222)
T cd07018 87 G-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALL 165 (222)
T ss_pred C-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHH
Confidence 8 8899999999999999999999998543221 110 000000 011111
Q ss_pred -----------------CHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHH
Q 020093 222 -----------------GPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQE 259 (331)
Q Consensus 222 -----------------G~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~ 259 (331)
..... +-+..|+.+++++|++.||||++...+++.+.
T Consensus 166 ~~~~~~f~~~Va~~R~~~~~~~-~~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~ 219 (222)
T cd07018 166 DSLWDQYLADVAASRGLSPDAL-EALIDLGGDSAEEALEAGLVDGLAYRDELEAR 219 (222)
T ss_pred HHHHHHHHHHHHHHcCCCHHHH-HHHHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence 11222 33455999999999999999999977665543
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys |
| >cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.7e-12 Score=110.16 Aligned_cols=141 Identities=24% Similarity=0.284 Sum_probs=102.6
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHH
Q 020093 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI 161 (331)
Q Consensus 82 ~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l 161 (331)
.+|.++ ..+++.+...|.++|+++++++ +..|||.=+.+ |+++.. ...+...|
T Consensus 2 ~vi~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~ivl~insp-----GG~v~~----------------~~~I~~~l 54 (178)
T cd07021 2 YVIPIE-----GEIDPGLAAFVERALKEAKEEG-ADAVVLDIDTP-----GGRVDS----------------ALEIVDLI 54 (178)
T ss_pred EEEEEe-----eEECHHHHHHHHHHHHHHHhCC-CCeEEEEEECc-----CCCHHH----------------HHHHHHHH
Confidence 456665 3477888899999999999886 77777754432 544432 23566788
Q ss_pred HcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchH--------HHH------HHHhhC--HHH
Q 020093 162 RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYG--------SSI------MSRLVG--PKK 225 (331)
Q Consensus 162 ~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~--------~~~------L~r~vG--~~~ 225 (331)
..+++|||+.|+|.|.++|+.|+++||++++++++.|+.+++-. ..++ ... +.+.-| ...
T Consensus 55 ~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v~----~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~ 130 (178)
T cd07021 55 LNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPIP----GDGNGAADEKVQSYWRAKMRAAAEKKGRDPDI 130 (178)
T ss_pred HhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeEc----CCCccchhHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 89999999999999999999999999999999999999875442 2222 111 222223 334
Q ss_pred HHHHHHcC-------------CCCCHHHHHhcCcccEecCC
Q 020093 226 AREMWFLA-------------RFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 226 a~~l~ltG-------------~~~~a~eA~~~GLv~~vv~~ 253 (331)
+..|+-.. -.++++||++.|++|.+++.
T Consensus 131 a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~ 171 (178)
T cd07021 131 AEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGS 171 (178)
T ss_pred HHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECC
Confidence 55555544 27999999999999999864
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall |
| >cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.1e-09 Score=90.44 Aligned_cols=145 Identities=21% Similarity=0.218 Sum_probs=105.8
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHH
Q 020093 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI 161 (331)
Q Consensus 82 ~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l 161 (331)
.+|.++ ..+++.+..-|.+.++.+++| +++.|+|.=+- .|+++.. ...++..|
T Consensus 2 ~vi~i~-----G~I~~~~~~~l~~~l~~A~~~-~~~~i~l~inS-----PGG~v~~----------------~~~I~~~i 54 (172)
T cd07015 2 YVAQIK-----GQITSYTYDQFDRYITIAEQD-NAEAIIIELDT-----PGGRADA----------------AGNIVQRI 54 (172)
T ss_pred EEEEEe-----eEECHhHHHHHHHHHHHHhcC-CCCeEEEEEEC-----CCCCHHH----------------HHHHHHHH
Confidence 445554 247788888999999998865 57788775443 3554432 12455677
Q ss_pred HcCCCcEEEEEc---CccccchhhhhhcccEEEEeCCceeecCCCCccCCCC----ch----HHHH------HHHhhC--
Q 020093 162 RRLPKPVIAMVA---GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDA----GY----GSSI------MSRLVG-- 222 (331)
Q Consensus 162 ~~~~kPvIAav~---G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~----~g----~~~~------L~r~vG-- 222 (331)
...++||++.|. |.|..+|.-|+++||.+++.+++.++...+-.|.-+. .. -... +.+.-|
T Consensus 55 ~~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~ 134 (172)
T cd07015 55 QQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRN 134 (172)
T ss_pred HhcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcC
Confidence 788999999999 9999999999999999999999999998775432110 00 0111 222334
Q ss_pred HHHHHHHHHcCCCCCHHHHHhcCcccEecCC
Q 020093 223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 223 ~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~ 253 (331)
...+..++-....++++||+++|++|.++..
T Consensus 135 ~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~ 165 (172)
T cd07015 135 ATIAEEFITKDLSLTPEEALKYGVIEVVARD 165 (172)
T ss_pred HHHHHHHHHhhcCcCHHHHHHcCCceeeeCC
Confidence 4567778888899999999999999999975
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle |
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-08 Score=104.90 Aligned_cols=167 Identities=21% Similarity=0.321 Sum_probs=108.1
Q ss_pred CCCEEEEEEcC-----CCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhh
Q 020093 78 GEGIAKITINR-----PDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRL 152 (331)
Q Consensus 78 ~~~v~~ItLnr-----p~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 152 (331)
.+.|++|+++- ....+.++. +.+.+.|+++.+|++|++|||+-..+ |+.... ..
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp-----GGs~~a-------------se 383 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP-----GGSVTA-------------SE 383 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC-----CCcHHH-------------HH
Confidence 46688888763 222233444 56778888999999999999988764 432211 11
Q ss_pred hHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCC------------CccCCCCchH-------
Q 020093 153 NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGP------------KVGSFDAGYG------- 213 (331)
Q Consensus 153 ~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~------------~~Gl~p~~g~------- 213 (331)
.+.+.+..++...|||||.+.|.|.-||+-++++||.++|.+.+..|.-.+ ++|+-..+..
T Consensus 384 ~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~ 463 (618)
T PRK10949 384 VIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV 463 (618)
T ss_pred HHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCc
Confidence 233444556677899999999999999999999999999999877665322 1222111000
Q ss_pred ----------HHHHHHhh-----------------CHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHH
Q 020093 214 ----------SSIMSRLV-----------------GPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSRE 266 (331)
Q Consensus 214 ----------~~~L~r~v-----------------G~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~ 266 (331)
-..+...+ ..... +-+..|+.+++++|++.||||++...++ +.+.|++
T Consensus 464 ~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~~~~----ai~~a~~ 538 (618)
T PRK10949 464 SITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQI-DKIAQGHVWTGQDAKANGLVDSLGDFDD----AVAKAAE 538 (618)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHH-HHHhcCCcccHHHHHHcCCCccCCCHHH----HHHHHHH
Confidence 00011111 11222 3356899999999999999999976444 4444555
Q ss_pred Hhcc
Q 020093 267 ILRN 270 (331)
Q Consensus 267 la~~ 270 (331)
++..
T Consensus 539 ~a~~ 542 (618)
T PRK10949 539 LAKL 542 (618)
T ss_pred HcCC
Confidence 5544
|
|
| >cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-08 Score=86.85 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcC
Q 020093 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (331)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G 174 (331)
++..+..++.+.|..++.++.++.|+|.=+.+ |+++.. ...++..|..+++||++.+.|
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSp-----GG~v~~----------------~~~i~~~i~~~~~~v~~~~~g 67 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYINSP-----GGDVFA----------------GMAIYDTIKFIKADVVTIIDG 67 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEECC-----CCcHHH----------------HHHHHHHHHhcCCCceEEEEe
Confidence 56888999999999999887777777754432 544421 224566778889999999999
Q ss_pred ccccchhhhhhccc--EEEEeCCceeecCCCCccCCCCchHHH---------------HHHHhhC--HHHHHHHHHcCCC
Q 020093 175 YAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVG--PKKAREMWFLARF 235 (331)
Q Consensus 175 ~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~L~r~vG--~~~a~~l~ltG~~ 235 (331)
.|.++|.-|+++|| .|++.++++|.+....-|......-.. .+.+..| .....+++-.+..
T Consensus 68 ~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~ 147 (162)
T cd07013 68 LAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTW 147 (162)
T ss_pred ehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCcc
Confidence 99999999999999 688888999887554333211100001 1111122 3345566666778
Q ss_pred CCHHHHHhcCcccEe
Q 020093 236 YTAEEAEKMGLVNTV 250 (331)
Q Consensus 236 ~~a~eA~~~GLv~~v 250 (331)
++|+||+++||||++
T Consensus 148 ~sa~eA~~~GliD~i 162 (162)
T cd07013 148 LSAREAVEYGFADTI 162 (162)
T ss_pred ccHHHHHHcCCCCcC
Confidence 899999999999975
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas |
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-09 Score=102.84 Aligned_cols=237 Identities=11% Similarity=0.041 Sum_probs=160.0
Q ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHH
Q 020093 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQ 158 (331)
Q Consensus 79 ~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~ 158 (331)
.+++.++++ |+. |..|.++..+|..-++.++.+..+++..+++...+.|++|.|..++.-....- .......+++++
T Consensus 65 ~~~~~~dmv-iea-v~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~f-spa~~m~LlEii 141 (380)
T KOG1683|consen 65 TGFANADMV-IEA-VFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFF-SPAHWMQLLEII 141 (380)
T ss_pred cccccccee-ccc-hhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcccccc-CHHHHHHHHHHH
Confidence 378888998 665 99999999999999999999999999999998878999999998864322111 111123467888
Q ss_pred HHHHcCCCcEEEEEcCccccch--hhhhhcccEEEEe--CCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCC
Q 020093 159 VQIRRLPKPVIAMVAGYAVGGG--HVLHMVCDLTIAA--DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLAR 234 (331)
Q Consensus 159 ~~l~~~~kPvIAav~G~a~GgG--~~Lal~cD~~ia~--~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~ 234 (331)
...++++.|+.+++||++--|| +-++-+|+|++.. ..-..+..+...++..+..-.-.+...+|...+-.-+--+.
T Consensus 142 ~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~ 221 (380)
T KOG1683|consen 142 LALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGV 221 (380)
T ss_pred HhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhcc
Confidence 8999999999999999999998 8899999999998 33344667777774332223334444556666666677789
Q ss_pred CCCHHHHHhcCcccEecCC--CcHHHHHHHHHHHHhccCHHHHHHH--------HHHHHccccCchhHHHHHHHHHHHHh
Q 020093 235 FYTAEEAEKMGLVNTVVPL--EKLEQETIKWSREILRNSPTAIRVL--------KSALNAVDDGHAGLQTLGGDATLIFY 304 (331)
Q Consensus 235 ~~~a~eA~~~GLv~~vv~~--~~l~~~a~~~a~~la~~~~~a~~~~--------K~~l~~~~~~~~~~~~~~~~~~~~~~ 304 (331)
-++-+||.+-||++++.|. +++.+....--+.-....+.+-..+ .+.+++..-... ......+-+..+.
T Consensus 222 gfdv~eal~~gl~~~~~~r~~eel~~~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l~~~~~-~r~~~~ed~v~~~ 300 (380)
T KOG1683|consen 222 GFDVAEALAVGLGDEIGPRIEEELLEKGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRLSLTPN-PRVADDEDFVEFL 300 (380)
T ss_pred CccHHHHHhhccchhccchhHHHHHHHHhhhhhccCcccccccccccCCChhhHHHHHHHhccCCC-cccCCHHHHHHHH
Confidence 9999999999999999985 3333333322222222222222111 122222110000 0001112234455
Q ss_pred CChhHHHHHHHHhcC
Q 020093 305 GTEEGSEGKTAFVER 319 (331)
Q Consensus 305 ~s~d~~egi~aflek 319 (331)
.++-.+|++..++|+
T Consensus 301 ~~p~VnEal~~l~EG 315 (380)
T KOG1683|consen 301 LSPFVNEALRCLLEG 315 (380)
T ss_pred hhHHHHHHHHHHHHH
Confidence 678899999999986
|
|
| >PRK11778 putative inner membrane peptidase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.9e-07 Score=88.30 Aligned_cols=157 Identities=16% Similarity=0.139 Sum_probs=99.8
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHH
Q 020093 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (331)
Q Consensus 78 ~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (331)
.+.|++|.++-+=..+. ...+.+++...+..+..+ ..|||+-+.+ |+.+.... . ....
T Consensus 89 ~~~v~VI~~~G~I~~~~-~~~l~e~i~a~l~~A~~~---~aVvLridSp-----GG~v~~s~---------~----a~~~ 146 (330)
T PRK11778 89 KPRLFVLDFKGDIDASE-VESLREEITAILAVAKPG---DEVLLRLESP-----GGVVHGYG---------L----AASQ 146 (330)
T ss_pred CCeEEEEEEEEEECCCc-chhhHHHHHHHHHhccCC---CeEEEEEeCC-----CCchhHHH---------H----HHHH
Confidence 46788888885432111 123446666666655543 4677766554 44332110 0 1112
Q ss_pred HHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhC---------------
Q 020093 158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVG--------------- 222 (331)
Q Consensus 158 ~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG--------------- 222 (331)
+.+++...||+|+.+++.|.-||+.++++||-+++.+.+.+|...+-.. .|. ...|...+|
T Consensus 147 l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~---~~~lLeKlGI~~evi~aG~yK~a~ 222 (330)
T PRK11778 147 LQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPN---FHRLLKKHDIDVELHTAGEYKRTL 222 (330)
T ss_pred HHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccC---HHHHHHHCCCceEEEEecCccCCC
Confidence 3456778899999999999999999999999999999998887443221 111 111111111
Q ss_pred ------------------------------HH---HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHH
Q 020093 223 ------------------------------PK---KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQET 260 (331)
Q Consensus 223 ------------------------------~~---~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a 260 (331)
.. ...+-+.+|+.+++++|++.||||++...+++...+
T Consensus 223 ~pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~ 293 (330)
T PRK11778 223 TLFGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLEL 293 (330)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHH
Confidence 11 123456789999999999999999998777654433
|
|
| >PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.3e-07 Score=82.39 Aligned_cols=140 Identities=19% Similarity=0.169 Sum_probs=92.2
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 020093 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (331)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav 172 (331)
..++.++...+...|..++.++..+-|.|.=+. .|+|+.. ...++..|...+.||++.+
T Consensus 38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InS-----pGG~v~~----------------g~~I~d~i~~~~~~v~t~~ 96 (200)
T PRK00277 38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINS-----PGGSVTA----------------GLAIYDTMQFIKPDVSTIC 96 (200)
T ss_pred CEECHHHHHHHHHHHHHhhccCCCCCEEEEEEC-----CCCcHHH----------------HHHHHHHHHhcCCCEEEEE
Confidence 447889999999999888765444434432222 2334321 1234556778889999999
Q ss_pred cCccccchhhhhhccc--EEEEeCCceeecCCCCccCCCCchH----H-----------HHHHHhhC--HHHHHHHHHcC
Q 020093 173 AGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYG----S-----------SIMSRLVG--PKKAREMWFLA 233 (331)
Q Consensus 173 ~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~----~-----------~~L~r~vG--~~~a~~l~ltG 233 (331)
.|.|.+.|..|+++++ .|++.++++|.+....-|......- + ..+....| .....+++-.+
T Consensus 97 ~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~ 176 (200)
T PRK00277 97 IGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRD 176 (200)
T ss_pred EeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCC
Confidence 9999999999998754 6888888888776554222110000 0 11222233 24455666677
Q ss_pred CCCCHHHHHhcCcccEecCC
Q 020093 234 RFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 234 ~~~~a~eA~~~GLv~~vv~~ 253 (331)
..++|+||+++||||+|+..
T Consensus 177 ~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 177 NFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred ccccHHHHHHcCCccEEeec
Confidence 89999999999999999865
|
|
| >cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.4e-07 Score=80.23 Aligned_cols=133 Identities=20% Similarity=0.230 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcC
Q 020093 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (331)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G 174 (331)
++.++..++...|..++.++..+.|+|.=+.+ |+|+.. ...++..|...+.||++.+.|
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSp-----GG~v~~----------------~~~i~~~l~~~~~~v~t~~~g 76 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYINSP-----GGSVTA----------------GLAIYDTMQYIKPPVSTICLG 76 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEECC-----CCCHHH----------------HHHHHHHHHhcCCCEEEEEEe
Confidence 67889999999999998876656665543332 444431 123455677789999999999
Q ss_pred ccccchhhhhhccc--EEEEeCCceeecCCCCccCCCCchHHH-----------------HHHHhhC--HHHHHHHHHcC
Q 020093 175 YAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGSS-----------------IMSRLVG--PKKAREMWFLA 233 (331)
Q Consensus 175 ~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~~-----------------~L~r~vG--~~~a~~l~ltG 233 (331)
.|.++|.-++++|| .|++.+++.|.+-+...+.... ... .+....| .....+++-.+
T Consensus 77 ~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~--~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~ 154 (171)
T cd07017 77 LAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQ--ASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRD 154 (171)
T ss_pred EehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC
Confidence 99999999999999 7999999999998876653221 111 0111122 23455666678
Q ss_pred CCCCHHHHHhcCcccEe
Q 020093 234 RFYTAEEAEKMGLVNTV 250 (331)
Q Consensus 234 ~~~~a~eA~~~GLv~~v 250 (331)
..++++||+++||||+|
T Consensus 155 ~~lta~EA~e~GiiD~V 171 (171)
T cd07017 155 RYMSAEEAKEYGLIDKI 171 (171)
T ss_pred ccccHHHHHHcCCCccC
Confidence 89999999999999975
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ |
| >COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.5e-07 Score=87.78 Aligned_cols=135 Identities=24% Similarity=0.356 Sum_probs=94.5
Q ss_pred HHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccc
Q 020093 100 VKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179 (331)
Q Consensus 100 ~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~Gg 179 (331)
.+.+.+.|+.+..|++++.|||.=+-| |+.... ...+++.++++..-. ||++.|+++|.-|
T Consensus 82 ~~~~~~~l~~~~~~~~vk~vvL~inSP-----GG~v~a-------------s~~i~~~l~~l~~~~-PV~v~v~~~AASG 142 (317)
T COG0616 82 GDDIEEILRAARADPSVKAVVLRINSP-----GGSVVA-------------SELIARALKRLRAKK-PVVVSVGGYAASG 142 (317)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEECc-----CCchhH-------------HHHHHHHHHHHhhcC-CEEEEECCeecch
Confidence 456667777888899999999865443 443321 112334444444444 9999999999999
Q ss_pred hhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCH------------------------------------
Q 020093 180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP------------------------------------ 223 (331)
Q Consensus 180 G~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~------------------------------------ 223 (331)
|+.++++||.+||++++..|--.+..+. | ....+....|.
T Consensus 143 GY~IA~aAd~I~a~p~si~GSIGVi~~~-~---~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y 218 (317)
T COG0616 143 GYYIALAADKIVADPSSITGSIGVISGA-P---NFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETY 218 (317)
T ss_pred hhhhhccCCEEEecCCceeeeceeEEec-C---CHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999875444442 2 23334444441
Q ss_pred --------------HHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHH
Q 020093 224 --------------KKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLE 257 (331)
Q Consensus 224 --------------~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~ 257 (331)
.....-+.+|+.+++++|++.||||++...++..
T Consensus 219 ~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av 266 (317)
T COG0616 219 DEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAV 266 (317)
T ss_pred HHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHH
Confidence 1134467789999999999999999997654433
|
|
| >PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.2e-07 Score=80.02 Aligned_cols=137 Identities=20% Similarity=0.198 Sum_probs=98.0
Q ss_pred CCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEc
Q 020093 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (331)
Q Consensus 94 al~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~ 173 (331)
.++.++..++...|..++..+..+.|+|.=+. .|+++.. ...++..|..++.||++.+.
T Consensus 43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INS-----pGG~v~~----------------g~~I~d~i~~~~~~v~t~~~ 101 (207)
T PRK12553 43 QVDDASANDVMAQLLVLESIDPDRDITLYINS-----PGGSVTA----------------GDAIYDTIQFIRPDVQTVCT 101 (207)
T ss_pred eECHHHHHHHHHHHHHHHhCCCCCCEEEEEeC-----CCCcHHH----------------HHHHHHHHHhcCCCcEEEEE
Confidence 47899999999999999876544444443222 2444331 12456677888899999999
Q ss_pred Cccccchhhhhhccc--EEEEeCCceeecCCCCc-cCCCCchHH------------------HHHHHhhC--HHHHHHHH
Q 020093 174 GYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKV-GSFDAGYGS------------------SIMSRLVG--PKKAREMW 230 (331)
Q Consensus 174 G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~-Gl~p~~g~~------------------~~L~r~vG--~~~a~~l~ 230 (331)
|.|.+.|.-|+++|| .|++.+++.|.+-.... |.. .|.. ..+.+..| .....+++
T Consensus 102 G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~--~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~ 179 (207)
T PRK12553 102 GQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGI--RGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDT 179 (207)
T ss_pred eehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCC--ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999999 59999999999977653 211 1111 11222233 34456677
Q ss_pred HcCCCCCHHHHHhcCcccEecCC
Q 020093 231 FLARFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 231 ltG~~~~a~eA~~~GLv~~vv~~ 253 (331)
-.+..++|+||+++||||+|+..
T Consensus 180 ~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 180 DRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred hcCccccHHHHHHcCCccEEcCc
Confidence 77899999999999999999965
|
|
| >PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-06 Score=76.46 Aligned_cols=138 Identities=17% Similarity=0.118 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcC
Q 020093 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (331)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G 174 (331)
++..+...+...|..++..+..+.|+|.=+. .|+++.. ...++..|..++.||++.+.|
T Consensus 32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~INS-----pGG~v~a----------------g~aI~d~i~~~~~~V~t~v~G 90 (197)
T PRK14512 32 INKDLSELFQEKILLLEALDSKKPIFVYIDS-----EGGDIDA----------------GFAIFNMIRFVKPKVFTIGVG 90 (197)
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEEC-----CCCCHHH----------------HHHHHHHHHhCCCCEEEEEEe
Confidence 7788889999988887763333444443322 2444321 124556777889999999999
Q ss_pred ccccchhhhhhcccE--EEEeCCceeecCCCCccCCCCchHHH---------------HHHHhhC--HHHHHHHHHcCCC
Q 020093 175 YAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVG--PKKAREMWFLARF 235 (331)
Q Consensus 175 ~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~L~r~vG--~~~a~~l~ltG~~ 235 (331)
.|.+.|.-|+++||- |++.++++|-+-.+.-++.....-.. .+....| .....+++-....
T Consensus 91 ~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~ 170 (197)
T PRK14512 91 LVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFW 170 (197)
T ss_pred eeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcc
Confidence 999999999999985 99999999977555433211110000 0111222 2334555555678
Q ss_pred CCHHHHHhcCcccEecCC
Q 020093 236 YTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 236 ~~a~eA~~~GLv~~vv~~ 253 (331)
++|+||+++||||+|++.
T Consensus 171 lta~EA~~yGliD~I~~~ 188 (197)
T PRK14512 171 LDSSSAVKYGLVFEVVET 188 (197)
T ss_pred cCHHHHHHcCCccEeecC
Confidence 999999999999999975
|
|
| >PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.8e-07 Score=79.60 Aligned_cols=142 Identities=23% Similarity=0.315 Sum_probs=94.0
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCee--EEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHH
Q 020093 84 ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVG--VIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI 161 (331)
Q Consensus 84 ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~--~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l 161 (331)
|.|+.| ++.++...+...|..++..+..+ .|.|.+. |+|+.. ...++..|
T Consensus 19 i~l~g~-----I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSp-------GG~v~~----------------g~~i~~~i 70 (182)
T PF00574_consen 19 IFLNGP-----IDEESANRLISQLLYLENEDKNKPINIYINSP-------GGDVDA----------------GLAIYDAI 70 (182)
T ss_dssp EEEESS-----BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEEC-------EBCHHH----------------HHHHHHHH
T ss_pred EEECCc-----cCHHHHHHHHHHHHHHhccCCCceEEEEEcCC-------CCccHH----------------HHHHHHHH
Confidence 455544 78999999999888774332222 2334443 444431 22466688
Q ss_pred HcCCCcEEEEEcCccccchhhhhhcccE--EEEeCCceeecCCCCccCCCCchHHH---------------HHHHhhC--
Q 020093 162 RRLPKPVIAMVAGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVG-- 222 (331)
Q Consensus 162 ~~~~kPvIAav~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~L~r~vG-- 222 (331)
..++.|+++.+.|.|.+.|.-|.++||. |++.+++.|.+-++..+......-.. .+....|
T Consensus 71 ~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~ 150 (182)
T PF00574_consen 71 RSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLS 150 (182)
T ss_dssp HHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred HhcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 8999999999999999999999999999 89999999999888766432110110 0111112
Q ss_pred HHHHHHHHHcCCCCCHHHHHhcCcccEecCC
Q 020093 223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 223 ~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~ 253 (331)
.....+++-....++++||+++||||+|+..
T Consensus 151 ~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 151 KEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred HHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 2333444445567899999999999999853
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A .... |
| >PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.5e-05 Score=71.74 Aligned_cols=140 Identities=20% Similarity=0.226 Sum_probs=93.0
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 020093 92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (331)
Q Consensus 92 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa 171 (331)
.-+++++-++...+.++.+++. ++=+|-|.=.++ ++. |.+-.+ ... ...+.+++..+.....|+|+.
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpG-a~~-g~~aE~---------~G~-~~~ia~~~~~~s~~~VP~IsV 142 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAG-AYP-GVGAEE---------RGQ-GEAIARNLMEMSDLKVPIIAI 142 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCC-cCC-CHhHHh---------ccH-HHHHHHHHHHHhCCCCCEEEE
Confidence 4668888889888888888754 344555543331 342 332110 011 112445666778999999999
Q ss_pred EcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEec
Q 020093 172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251 (331)
Q Consensus 172 v~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv 251 (331)
|-|.|.|||......||++++.+++.|+. +++-+.+..|-+-- .++.+. -.-..+++.++.+.|+||+|+
T Consensus 143 I~G~~~gGgA~a~~~~D~v~m~~~a~~~v-------~~pe~~a~il~~~~--~~a~~a-a~~~~~~a~~l~~~g~iD~ii 212 (256)
T PRK12319 143 IIGEGGSGGALALAVADQVWMLENTMYAV-------LSPEGFASILWKDG--SRATEA-AELMKITAGELLEMGVVDKVI 212 (256)
T ss_pred EeCCcCcHHHHHhhcCCEEEEecCceEEE-------cCHHHHHHHHhcCc--ccHHHH-HHHcCCCHHHHHHCCCCcEec
Confidence 99999999888888999999999998876 33344444444321 222221 112277999999999999999
Q ss_pred CCC
Q 020093 252 PLE 254 (331)
Q Consensus 252 ~~~ 254 (331)
+..
T Consensus 213 ~e~ 215 (256)
T PRK12319 213 PEH 215 (256)
T ss_pred CCC
Confidence 753
|
|
| >CHL00028 clpP ATP-dependent Clp protease proteolytic subunit | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.4e-06 Score=72.61 Aligned_cols=139 Identities=17% Similarity=0.127 Sum_probs=96.1
Q ss_pred CCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEc
Q 020093 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (331)
Q Consensus 94 al~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~ 173 (331)
.++.++..++...|-.++.++..+-|.|.=+. .|+|+.. -..++..|...+.||...+.
T Consensus 38 ~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INS-----pGG~v~~----------------g~aIyd~m~~~~~~V~Tv~~ 96 (200)
T CHL00028 38 EVDDEIANQLIGLMVYLSIEDDTKDLYLFINS-----PGGSVIS----------------GLAIYDTMQFVKPDVHTICL 96 (200)
T ss_pred eecHHHHHHHHHHHHHHhccCCCCCEEEEEeC-----CCcchhh----------------HHHHHHHHHhcCCCEEEEEE
Confidence 38899999999999888754433444332222 2334321 12456678889999999999
Q ss_pred Cccccchhhhhhccc--EEEEeCCceeecCCCCccCCCCchHHH-----------------HHHHhhC--HHHHHHHHHc
Q 020093 174 GYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGSS-----------------IMSRLVG--PKKAREMWFL 232 (331)
Q Consensus 174 G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~~-----------------~L~r~vG--~~~a~~l~lt 232 (331)
|.|.+.|.-|.+++| -|++.++++|.+-....|..- +-... .+....| .....+++-.
T Consensus 97 G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~-G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r 175 (200)
T CHL00028 97 GLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYE-GQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMER 175 (200)
T ss_pred EehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence 999999999999999 699999999998777655221 11111 1111222 2334555566
Q ss_pred CCCCCHHHHHhcCcccEecCCC
Q 020093 233 ARFYTAEEAEKMGLVNTVVPLE 254 (331)
Q Consensus 233 G~~~~a~eA~~~GLv~~vv~~~ 254 (331)
...++|+||+++||||+|+.+.
T Consensus 176 ~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 176 DVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred CccCCHHHHHHcCCCcEEeecC
Confidence 6789999999999999998653
|
|
| >CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.6e-05 Score=73.44 Aligned_cols=139 Identities=14% Similarity=0.177 Sum_probs=93.2
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 020093 92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (331)
Q Consensus 92 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa 171 (331)
.-.++++-++...+.++.++.. .+=+|-|.-.+ .+++ |.+-.+. .. ...+......+.....|+|++
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~f-~lPIItlvDTp-GA~~-G~~AE~~---------G~-~~aiar~l~~~a~~~VP~IsV 198 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANKF-GLPILTFIDTP-GAWA-GVKAEKL---------GQ-GEAIAVNLREMFSFEVPIICT 198 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCC-CcCc-CHHHHHH---------hH-HHHHHHHHHHHHcCCCCEEEE
Confidence 4678899999999998888765 34444443333 1443 3222110 01 112345555678899999999
Q ss_pred EcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEec
Q 020093 172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251 (331)
Q Consensus 172 v~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv 251 (331)
|-|.|.|||.-....||++++.+++.|+. +++-|.+..|.+- ..+|.+. ...-.++|++.+++|+||+|+
T Consensus 199 ViGeggsGGAlal~~aD~V~m~e~a~~sV-------isPEg~a~Il~~d--~~~a~~a-A~~~~ita~dL~~~giiD~ii 268 (322)
T CHL00198 199 IIGEGGSGGALGIGIGDSIMMLEYAVYTV-------ATPEACAAILWKD--SKKSLDA-AEALKITSEDLKVLGIIDEII 268 (322)
T ss_pred EeCcccHHHHHhhhcCCeEEEeCCeEEEe-------cCHHHHHHHHhcc--hhhHHHH-HHHcCCCHHHHHhCCCCeEec
Confidence 99999888865555699999999998876 3344445555443 3344432 334689999999999999999
Q ss_pred CC
Q 020093 252 PL 253 (331)
Q Consensus 252 ~~ 253 (331)
|.
T Consensus 269 ~E 270 (322)
T CHL00198 269 PE 270 (322)
T ss_pred cC
Confidence 74
|
|
| >TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.5e-06 Score=71.79 Aligned_cols=138 Identities=17% Similarity=0.154 Sum_probs=92.7
Q ss_pred CCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEc
Q 020093 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (331)
Q Consensus 94 al~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~ 173 (331)
.++.++..++...|..++.++..+-|+|.=+. .|+|+.. -..++..|..++.||...+.
T Consensus 34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InS-----pGG~v~~----------------g~~I~d~l~~~~~~v~t~~~ 92 (191)
T TIGR00493 34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYINS-----PGGSITA----------------GLAIYDTMQFIKPDVSTICI 92 (191)
T ss_pred EEChHHHHHHHHHHHHhhccCCCCCEEEEEEC-----CCCCHHH----------------HHHHHHHHHhcCCCEEEEEE
Confidence 37788888888888888865544445443322 2444421 12345567777778888889
Q ss_pred Cccccchhhhhhccc--EEEEeCCceeecCCCCccCCCCchHH---------------HHHHHhhC--HHHHHHHHHcCC
Q 020093 174 GYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGS---------------SIMSRLVG--PKKAREMWFLAR 234 (331)
Q Consensus 174 G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~---------------~~L~r~vG--~~~a~~l~ltG~ 234 (331)
|.|.+.|.-|++++| .|++.++++|.+-++..|......-. ..+.+..| .....+++-.+.
T Consensus 93 G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~ 172 (191)
T TIGR00493 93 GQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDF 172 (191)
T ss_pred EeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCc
Confidence 999999999988766 69999999999977654321111111 01222333 244556667778
Q ss_pred CCCHHHHHhcCcccEecC
Q 020093 235 FYTAEEAEKMGLVNTVVP 252 (331)
Q Consensus 235 ~~~a~eA~~~GLv~~vv~ 252 (331)
.++|+||+++||||+|+.
T Consensus 173 ~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 173 FMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred cCcHHHHHHcCCccEEec
Confidence 999999999999999974
|
This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model. |
| >PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2e-05 Score=76.05 Aligned_cols=138 Identities=19% Similarity=0.184 Sum_probs=90.0
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 020093 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (331)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav 172 (331)
.+++++-++...+.++.++.. ++=+|-|.=..+ ++ .|.+-.+. . ....+...+..+....+|+|+.|
T Consensus 200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTpG-A~-pG~~AEe~---------G-qa~aIAr~l~ams~l~VPiISVV 266 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTPG-AY-AGIKAEEL---------G-QGEAIAFNLREMFGLRVPIIATV 266 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCC-cC-CCHHHHHH---------h-HHHHHHHHHHHHhcCCCCEEEEE
Confidence 568899999999998888764 444555543331 33 33322211 0 11124456667889999999999
Q ss_pred cCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecC
Q 020093 173 AGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252 (331)
Q Consensus 173 ~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~ 252 (331)
-|.+.+||.-...+||++++.+++.++. +++-+.+..|.+-- .+|.+.. ..-.++++++++.|+||+|++
T Consensus 267 iGeGgSGGAlalg~aD~VlMle~A~ysV-------isPEgaAsILwkd~--~~A~eAA-ealkitA~dL~~~GiID~II~ 336 (431)
T PLN03230 267 IGEGGSGGALAIGCGNRMLMMENAVYYV-------ASPEACAAILWKSA--AAAPKAA-EALRITAAELVKLGVVDEIVP 336 (431)
T ss_pred eCCCCcHHHHHhhcCCEEEEecCCEEEe-------cCHHHHHHHHhccc--cchHHHH-HHcCCCHHHHHhCCCCeEecc
Confidence 9999666654445789999999998775 33333444444321 1222221 234899999999999999997
Q ss_pred C
Q 020093 253 L 253 (331)
Q Consensus 253 ~ 253 (331)
.
T Consensus 337 E 337 (431)
T PLN03230 337 E 337 (431)
T ss_pred C
Confidence 4
|
|
| >PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-05 Score=73.03 Aligned_cols=95 Identities=21% Similarity=0.424 Sum_probs=77.4
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 020093 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (331)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav 172 (331)
+.++.+..+++.++++...++..+-.+ |...| +++.. -.++...|.+++.++++.|
T Consensus 70 ~~I~i~dse~v~raI~~~~~~~~IdLi-i~TpG-------G~v~A----------------A~~I~~~l~~~~~~v~v~V 125 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKDKPIDLI-IHTPG-------GLVDA----------------AEQIARALREHPAKVTVIV 125 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCCCceEEE-EECCC-------CcHHH----------------HHHHHHHHHhCCCCEEEEE
Confidence 678999999999999999877665444 44333 33321 2245667889999999999
Q ss_pred cCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCc
Q 020093 173 AGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAG 211 (331)
Q Consensus 173 ~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~ 211 (331)
+..|+.+|.-|+++||-+++.+++.+|-.+..+|-.|..
T Consensus 126 P~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~ 164 (285)
T PF01972_consen 126 PHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAA 164 (285)
T ss_pred CcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChH
Confidence 999999999999999999999999999999999988754
|
The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane |
| >TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.1e-05 Score=71.41 Aligned_cols=139 Identities=19% Similarity=0.194 Sum_probs=91.9
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 020093 92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (331)
Q Consensus 92 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa 171 (331)
.-+++++-++...+.++.++.. ++=+|-|.-.++ +++ |.+-.+.. . ...+..++..+.....|+|++
T Consensus 129 ~G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpG-a~~-g~~aE~~G---------~-~~aia~~l~a~s~~~VP~IsV 195 (316)
T TIGR00513 129 FGMPAPEGYRKALRLMKMAERF-KMPIITFIDTPG-AYP-GIGAEERG---------Q-SEAIARNLREMARLGVPVICT 195 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCC-CCC-CHHHHHHH---------H-HHHHHHHHHHHHcCCCCEEEE
Confidence 4678899999998888888754 445555544332 333 33222110 1 112445666778999999999
Q ss_pred EcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEec
Q 020093 172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251 (331)
Q Consensus 172 v~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv 251 (331)
|-|.|.|||.-....||++++.+++.++. +++-|.+..|-+- ..++.+..- -..+++.++.+.|+||+|+
T Consensus 196 ViGeggsGGAla~~~aD~v~m~~~a~~sV-------isPEg~a~Il~kd--~~~a~~aae-~~~~ta~~l~~~G~iD~II 265 (316)
T TIGR00513 196 VIGEGGSGGALAIGVGDKVNMLEYSTYSV-------ISPEGCAAILWKD--ASKAPKAAE-AMKITAPDLKELGLIDSII 265 (316)
T ss_pred EecccccHHHhhhccCCEEEEecCceEEe-------cCHHHHHHHhccc--hhhHHHHHH-HccCCHHHHHHCCCCeEec
Confidence 99999777775555699999999998775 3444445555442 122222222 2677899999999999999
Q ss_pred CC
Q 020093 252 PL 253 (331)
Q Consensus 252 ~~ 253 (331)
|.
T Consensus 266 ~e 267 (316)
T TIGR00513 266 PE 267 (316)
T ss_pred cC
Confidence 74
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=5e-05 Score=71.58 Aligned_cols=139 Identities=20% Similarity=0.235 Sum_probs=94.8
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 020093 92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (331)
Q Consensus 92 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa 171 (331)
.-+++++-++...+.++.++.. ++=+|-|.=..+ +++ |.+-.+. .. ...+..++..+.....|+|+.
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpG-a~~-G~~aE~~---------G~-~~aia~~l~~~a~~~VP~IsV 195 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPG-AYP-GIGAEER---------GQ-SEAIARNLREMARLKVPIICT 195 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCC-CCC-CHHHHhc---------cH-HHHHHHHHHHHhCCCCCEEEE
Confidence 4568899999888888887754 455555544432 333 4322210 01 113446667788999999999
Q ss_pred EcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEec
Q 020093 172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251 (331)
Q Consensus 172 v~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv 251 (331)
|-|.|.|||.-....||++++.+++.|+. +++-|.+..|.+- ..++.+..- ...++++++.+.|+||+|+
T Consensus 196 IiGeg~sGGAla~~~aD~v~m~~~A~~sv-------isPEg~a~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~II 265 (319)
T PRK05724 196 VIGEGGSGGALAIGVGDRVLMLEYSTYSV-------ISPEGCASILWKD--ASKAPEAAE-AMKITAQDLKELGIIDEII 265 (319)
T ss_pred EeCCccHHHHHHHhccCeeeeecCceEee-------cCHHHHHHHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceEec
Confidence 99999887775555699999999998775 4444555555543 233443333 5678999999999999999
Q ss_pred CC
Q 020093 252 PL 253 (331)
Q Consensus 252 ~~ 253 (331)
|.
T Consensus 266 ~E 267 (319)
T PRK05724 266 PE 267 (319)
T ss_pred cC
Confidence 74
|
|
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.7e-05 Score=81.29 Aligned_cols=86 Identities=19% Similarity=0.204 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccc
Q 020093 98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (331)
Q Consensus 98 ~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~ 177 (331)
..+.++.++|+.+.+|+.|++|||.-.+. .|+++..+ ..+.+.+..+....|||||..++++
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~----~g~~~~~~-------------~ei~~ai~~fk~sgKpVvA~~~~~~- 137 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSNF----SGWDSPHL-------------VEIGSALSEFKDSGKPVYAYGTNYS- 137 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccCC----CCCCHHHH-------------HHHHHHHHHHHhcCCeEEEEEcccc-
Confidence 35679999999999999999999987542 23333211 1133445566677899999988875
Q ss_pred cchhhhhhcccEEEEeCCceeecC
Q 020093 178 GGGHVLHMVCDLTIAADNAIFGQT 201 (331)
Q Consensus 178 GgG~~Lal~cD~~ia~~~a~f~~p 201 (331)
-+|+-|+.+||-+++.+.+.+++.
T Consensus 138 s~~YylAs~AD~I~~~p~G~v~~~ 161 (584)
T TIGR00705 138 QGQYYLASFADEIILNPMGSVDLH 161 (584)
T ss_pred chhhhhhhhCCEEEECCCceEEee
Confidence 678999999999999998888664
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >PF01343 Peptidase_S49: Peptidase family S49 peptidase classification | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.8e-07 Score=75.34 Aligned_cols=103 Identities=21% Similarity=0.298 Sum_probs=64.5
Q ss_pred HHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccC---------------------CCCc-----hHH
Q 020093 161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGS---------------------FDAG-----YGS 214 (331)
Q Consensus 161 l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl---------------------~p~~-----g~~ 214 (331)
+....|||||.++|.|..+|+-|+++||-+++.+.+.++...+.... .-.. ..+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 35678999999999999999999999999999999988875322111 0011 000
Q ss_pred ----HHHHHhhC-----------HHH-----HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHH
Q 020093 215 ----SIMSRLVG-----------PKK-----AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKW 263 (331)
Q Consensus 215 ----~~L~r~vG-----------~~~-----a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~ 263 (331)
..+.+++. ..| ..+-++.|..+++++|++.||||++...+++...+.+.
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~ 150 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKL 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHH
Confidence 11111111 111 22336789999999999999999998777665554443
|
; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A. |
| >PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.5e-05 Score=68.96 Aligned_cols=140 Identities=15% Similarity=0.123 Sum_probs=94.3
Q ss_pred CCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEc
Q 020093 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (331)
Q Consensus 94 al~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~ 173 (331)
.++.++..++...|..++.+...+-|.+.=+. .|+|+.. ...++..|..++-||...+.
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INS-----pGG~v~~----------------g~aIyd~m~~~~~~V~t~~~ 91 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINS-----PGGSVYD----------------GLGIFDTMQHVKPDVHTVCV 91 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEeC-----CCcchhh----------------HHHHHHHHHhcCCCEEEEEE
Confidence 38899999999999988754433434333222 2444331 12455677888999999999
Q ss_pred CccccchhhhhhcccE--EEEeCCceeecCCCCccCCCCchHHH---------------HHHHhhCH--HHHHHHHHcCC
Q 020093 174 GYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVGP--KKAREMWFLAR 234 (331)
Q Consensus 174 G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~L~r~vG~--~~a~~l~ltG~ 234 (331)
|.|.+.|.-|++++|. |++.++++|.+-.+.-|......-.. .+.+..|. ....+++-.-.
T Consensus 92 G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~ 171 (196)
T PRK12551 92 GLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDF 171 (196)
T ss_pred EEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCc
Confidence 9999999999999985 88999999998776543221110011 01222232 23445555567
Q ss_pred CCCHHHHHhcCcccEecCCC
Q 020093 235 FYTAEEAEKMGLVNTVVPLE 254 (331)
Q Consensus 235 ~~~a~eA~~~GLv~~vv~~~ 254 (331)
.++|+||+++||||+|++..
T Consensus 172 ~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 172 FMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred CCCHHHHHHcCCCcEEeccC
Confidence 89999999999999999753
|
|
| >PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.3e-05 Score=69.34 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHhcccC---CCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEE
Q 020093 94 AFRPHTVKELIRAFNDARDD---SSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIA 170 (331)
Q Consensus 94 al~~~~~~eL~~al~~~~~d---~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIA 170 (331)
.++..+...+...|..++.. .+|.+. |-+.| +++.. ...++..|...+-||..
T Consensus 62 ~Idd~~a~~i~aqLl~L~~~~~~~~I~ly-INSpG-------Gsv~a----------------GlaIyd~m~~~~~~V~t 117 (221)
T PRK14514 62 QIDDYTANTIQAQLLYLDSVDPGKDISIY-INSPG-------GSVYA----------------GLGIYDTMQFISSDVAT 117 (221)
T ss_pred EEcHHHHHHHHHHHHHHhccCCCCCEEEE-EECCC-------cchhh----------------HHHHHHHHHhcCCCEEE
Confidence 47888888888877666543 333333 34444 33221 12355677888999999
Q ss_pred EEcCccccchhhhhhcccE--EEEeCCceeecCCCCccCCCCchHH----H-----------HHHHhhCH--HHHHHHHH
Q 020093 171 MVAGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGS----S-----------IMSRLVGP--KKAREMWF 231 (331)
Q Consensus 171 av~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~----~-----------~L~r~vG~--~~a~~l~l 231 (331)
.+.|.|.+.|.-|++++|. |++.++++|.+-...-|......-. . .+.+..|. ....+.+-
T Consensus 118 v~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~ 197 (221)
T PRK14514 118 ICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSD 197 (221)
T ss_pred EEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence 9999999999999999996 9999999999877654432111000 0 01122232 33445556
Q ss_pred cCCCCCHHHHHhcCcccEecCC
Q 020093 232 LARFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 232 tG~~~~a~eA~~~GLv~~vv~~ 253 (331)
....++|+||+++||||+|+..
T Consensus 198 rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 198 RDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred cCccCCHHHHHHcCCccEEeec
Confidence 6778999999999999999853
|
|
| >PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00011 Score=75.41 Aligned_cols=139 Identities=15% Similarity=0.156 Sum_probs=93.1
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 020093 92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (331)
Q Consensus 92 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa 171 (331)
.-+++++-++-..+.++.++.. .+=+|-|.=.++ +++ |.+..+.. ....+...+..+.....|+|++
T Consensus 220 fG~~~peGyRKAlRlmkLAekf-gLPIVtLVDTpG-A~p-G~~AEe~G----------q~~aIArnl~amasl~VP~ISV 286 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPG-AYA-DLKSEELG----------QGEAIAHNLRTMFGLKVPIVSI 286 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCC-cCC-CchhHHHh----------HHHHHHHHHHHHhCCCCCEEEE
Confidence 4577888888888888877754 344444433221 343 32222211 1112445666778999999999
Q ss_pred EcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEec
Q 020093 172 VAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVV 251 (331)
Q Consensus 172 v~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv 251 (331)
|-|.|.|||.-....||++++.++++|+. .++-|++..|.+- ..+|.+ +...-.++|++.+++|+||+|+
T Consensus 287 ViGeggSGGAlA~g~aD~VlMle~A~~sV-------isPEgaAsILwkd--~~~A~e-AAe~lkiTa~dL~~lGiiD~II 356 (762)
T PLN03229 287 VIGEGGSGGALAIGCANKLLMLENAVFYV-------ASPEACAAILWKS--AKAAPK-AAEKLRITAQELCRLQIADGII 356 (762)
T ss_pred EeCCcchHHHHHhhcCCEEEEecCCeEEe-------cCHHHHHHHHhcC--cccHHH-HHHHcCCCHHHHHhCCCCeeec
Confidence 99999888887777899999999987765 3334445555443 223333 3345689999999999999999
Q ss_pred CC
Q 020093 252 PL 253 (331)
Q Consensus 252 ~~ 253 (331)
|.
T Consensus 357 pE 358 (762)
T PLN03229 357 PE 358 (762)
T ss_pred cC
Confidence 84
|
|
| >PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.7e-05 Score=66.92 Aligned_cols=136 Identities=19% Similarity=0.249 Sum_probs=94.5
Q ss_pred CCCHHHHHHHHHHHHhcccCC---CeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEE
Q 020093 94 AFRPHTVKELIRAFNDARDDS---SVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIA 170 (331)
Q Consensus 94 al~~~~~~eL~~al~~~~~d~---~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIA 170 (331)
.++.++-..+...|..++.++ +|.+. |-+.| +|+.. -..++..|...+-||..
T Consensus 35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~-INSpG-------G~v~~----------------GlaIyd~m~~~~~~V~T 90 (201)
T PRK14513 35 PIESQMANTIVAQLLLLDSQNPEQEIQMY-INCPG-------GEVYA----------------GLAIYDTMRYIKAPVST 90 (201)
T ss_pred EEcHHHHHHHHHHHHHhhccCCCCCEEEE-EECCC-------Cchhh----------------HHHHHHHHHhcCCCEEE
Confidence 488899999988887777543 33333 34444 33321 12456678888999999
Q ss_pred EEcCccccchhhhhhcccE--EEEeCCceeecCCCCccCCCCchHHHH-----------------HHHhhC--HHHHHHH
Q 020093 171 MVAGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSSI-----------------MSRLVG--PKKAREM 229 (331)
Q Consensus 171 av~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~-----------------L~r~vG--~~~a~~l 229 (331)
.+.|.|.+.|.-|++++|- |++.+++++-+-.+..|.. +..... +.+..| ...-.++
T Consensus 91 i~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~--G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~ 168 (201)
T PRK14513 91 ICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR--GNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRD 168 (201)
T ss_pred EEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 9999999999999999996 9999999999877765531 111211 122223 2334455
Q ss_pred HHcCCCCCHHHHHhcCcccEecCCCc
Q 020093 230 WFLARFYTAEEAEKMGLVNTVVPLEK 255 (331)
Q Consensus 230 ~ltG~~~~a~eA~~~GLv~~vv~~~~ 255 (331)
+-....++|+||+++||||+|+++.+
T Consensus 169 ~~rd~~msa~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 169 MERDYFMSPEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred hccCcccCHHHHHHcCCCcEEeccCC
Confidence 55567899999999999999997543
|
|
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=7.1e-05 Score=76.95 Aligned_cols=86 Identities=20% Similarity=0.262 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccc
Q 020093 98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (331)
Q Consensus 98 ~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~ 177 (331)
-.+.++.++|+++.+|+.|++|||.-.+. .|..+.. ...+.+.+..++...|||||.-+.+ .
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~----gG~~~a~-------------~~eI~~ai~~fk~sGKpVvA~~~~~-~ 156 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNF----AGADQPS-------------MQYIGKALREFRDSGKPVYAVGDSY-S 156 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCC----CCccHHH-------------HHHHHHHHHHHHHhCCeEEEEecCc-c
Confidence 44678999999999999999999988653 1222211 0123345556677789999964444 5
Q ss_pred cchhhhhhcccEEEEeCCceeecC
Q 020093 178 GGGHVLHMVCDLTIAADNAIFGQT 201 (331)
Q Consensus 178 GgG~~Lal~cD~~ia~~~a~f~~p 201 (331)
-+++-|+.+||-+++.+.+.+++.
T Consensus 157 s~~YyLASaAD~I~l~P~G~v~~~ 180 (618)
T PRK10949 157 QGQYYLASFANKIYLSPQGVVDLH 180 (618)
T ss_pred chhhhhhhhCCEEEECCCceEEEe
Confidence 678999999999999999887764
|
|
| >TIGR03133 malonate_beta malonate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0004 Score=64.33 Aligned_cols=151 Identities=17% Similarity=0.240 Sum_probs=90.0
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccC----CCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDD----SSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d----~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
|+++-.+.-=..-++....-+.+..+++.+.+| ..+-+|.|.-.| |..+.+-. ..... ...+..
T Consensus 61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSg------GaRlqEg~----~~L~~--~a~i~~ 128 (274)
T TIGR03133 61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTG------GVRLQEAN----AGLIA--IAEIMR 128 (274)
T ss_pred EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCC------CcChhhhH----HHHHH--HHHHHH
Confidence 555555444455678888888888888887652 123355554433 33343210 00000 011122
Q ss_pred HHHHHHcCCCcEEEEEcCc--cccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCH--HHHHHHHHc
Q 020093 157 LQVQIRRLPKPVIAMVAGY--AVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP--KKAREMWFL 232 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~--a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~--~~a~~l~lt 232 (331)
....+... .|+|+.|.|+ |+||+..++.+||++|+++++++++....+ .-...|. --..+--|.
T Consensus 129 ~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP~V-----------Ie~~~G~e~~~~~d~~l~ 196 (274)
T TIGR03133 129 AILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGPEV-----------IEQEAGVEEFDSRDRALV 196 (274)
T ss_pred HHHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCHHH-----------HHHhcCCCccCHHHhccc
Confidence 22334444 9999999999 899999999999999999998888732211 1111221 112222333
Q ss_pred CCCCCHHHHHhcCcccEecCCCc
Q 020093 233 ARFYTAEEAEKMGLVNTVVPLEK 255 (331)
Q Consensus 233 G~~~~a~eA~~~GLv~~vv~~~~ 255 (331)
-+.+.+......|++|.++++|.
T Consensus 197 ~~~lGG~~~~~sG~~D~~v~dd~ 219 (274)
T TIGR03133 197 WRTTGGKHRFLSGDADVLVEDDV 219 (274)
T ss_pred ccccchHhHhhcccceEEeCCHH
Confidence 34566677888999999998743
|
Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase. |
| >TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00038 Score=64.90 Aligned_cols=162 Identities=19% Similarity=0.245 Sum_probs=102.7
Q ss_pred CCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEG-IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~-v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
++. |+++..|.--..-+++....+.+.++++.+.+. .+=+|.|...|+ + -+.+ +.... ........
T Consensus 118 ~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgG-a-----RmqE----g~~sL--~~~ak~~~ 184 (285)
T TIGR00515 118 YGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGG-A-----RMQE----ALLSL--MQMAKTSA 184 (285)
T ss_pred CCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCC-c-----cccc----chhHH--HhHHHHHH
Confidence 444 444444433356789999999999999888654 566777766553 2 2211 00000 00111222
Q ss_pred HHHHHHcCCCcEEEEEcCccccchh-hhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCC
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGH-VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF 235 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~-~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~ 235 (331)
...++.....|.|+++.|+|.||+. ..++.+|++|+.++|.+++...++ +-..+|.. +.-+.
T Consensus 185 ~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprV-----------ie~ti~e~------lpe~~ 247 (285)
T TIGR00515 185 ALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPRV-----------IEQTVREK------LPEGF 247 (285)
T ss_pred HHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHHH-----------HHHHhcCc------cchhc
Confidence 3345667789999999999999965 466799999999999888743321 11222211 11112
Q ss_pred CCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhc
Q 020093 236 YTAEEAEKMGLVNTVVPLEKLEQETIKWSREILR 269 (331)
Q Consensus 236 ~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~ 269 (331)
-+++-+.+.|+||.|+++.++.+...++.+.+..
T Consensus 248 q~ae~~~~~G~vD~iv~~~~~r~~l~~~L~~~~~ 281 (285)
T TIGR00515 248 QTSEFLLEHGAIDMIVHRPEMKKTLASLLAKLQN 281 (285)
T ss_pred CCHHHHHhCCCCcEEECcHHHHHHHHHHHHHHhh
Confidence 3556677899999999999998888777765543
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00049 Score=62.61 Aligned_cols=168 Identities=17% Similarity=0.194 Sum_probs=99.9
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhc-ccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDA-RDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~-~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
++.-..|.=|.|.. .|+.+-...+...+..+ +.+.++=+|.|.=.. .|-.|..-++.. . ...+..
T Consensus 30 ~G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtp--G~~~g~~aE~~G---------~-~~a~A~ 95 (238)
T TIGR03134 30 AGGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDTP--SQAYGRREELLG---------I-NQALAH 95 (238)
T ss_pred CCEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCC--CCCCCHHHHHHH---------H-HHHHHH
Confidence 45545555566653 68877777777777774 555676677776543 244443222111 1 112233
Q ss_pred HHHHH---HcCCCcEEEEEcCccccchh-hhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHc
Q 020093 157 LQVQI---RRLPKPVIAMVAGYAVGGGH-VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFL 232 (331)
Q Consensus 157 l~~~l---~~~~kPvIAav~G~a~GgG~-~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~lt 232 (331)
+...+ ...+.|+|+.|-|.+.|||+ .+.+.+|.++|-+++.++. .+.-+++..+.+-. ..+.++.-.
T Consensus 96 l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~v-------m~~e~aa~I~~~~~--~~~~e~a~~ 166 (238)
T TIGR03134 96 LAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVHV-------MDLESMARVTKRSV--EELEALAKS 166 (238)
T ss_pred HHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEEe-------cCHHHHHHHHccCH--hHHHHHHHh
Confidence 33444 45669999999999999886 4444589988887776654 44444444444433 233343332
Q ss_pred C--CCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHh
Q 020093 233 A--RFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREIL 268 (331)
Q Consensus 233 G--~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la 268 (331)
- ...+.+.+.++|+||+|+++.+-+..+.++++-+.
T Consensus 167 ~~~~a~~~~~~~~~G~vd~vi~~~~~~~~~~~~~~~~~ 204 (238)
T TIGR03134 167 SPVFAPGIENFVKLGGVHALLDVADADAPAAQLAAVLA 204 (238)
T ss_pred hhhhccCHHHHHhCCCccEEeCCCCcccHHHHHHHHHH
Confidence 2 24677789999999999987553333344444433
|
Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >PRK05654 acetyl-CoA carboxylase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00049 Score=64.45 Aligned_cols=165 Identities=17% Similarity=0.245 Sum_probs=106.2
Q ss_pred CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~-~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
+|.-..|.-|.|. ..-+++...-+.+.++++.+... .+=+|.|.-.| |..+.+ +.... ........
T Consensus 119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsg------GarmqE----gi~sL--~~~ak~~~ 185 (292)
T PRK05654 119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASG------GARMQE----GLLSL--MQMAKTSA 185 (292)
T ss_pred CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC------Ccchhh----hhhHH--HhHHHHHH
Confidence 5554445555554 56789999999999999888765 46677776555 222221 00000 00111222
Q ss_pred HHHHHHcCCCcEEEEEcCccccchh-hhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCC
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGH-VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF 235 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~-~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~ 235 (331)
.+.++.....|.|++|.|+|.||+. ..++.+|++|+.++|.+++...++ +...+|.. + .-+.
T Consensus 186 a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprv-----------ie~~~~e~----l--pe~~ 248 (292)
T PRK05654 186 ALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPRV-----------IEQTVREK----L--PEGF 248 (292)
T ss_pred HHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHHH-----------HHhhhhhh----h--hhhh
Confidence 3345667789999999999999965 457789999999999888733211 11112211 1 1123
Q ss_pred CCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCH
Q 020093 236 YTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSP 272 (331)
Q Consensus 236 ~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~ 272 (331)
-+++-+.+.|+||.|+++.++.....++.+.+...++
T Consensus 249 ~~ae~~~~~G~vD~Vv~~~e~r~~l~~~L~~~~~~~~ 285 (292)
T PRK05654 249 QRAEFLLEHGAIDMIVHRRELRDTLASLLALHTKQPA 285 (292)
T ss_pred cCHHHHHhCCCCcEEECHHHHHHHHHHHHHHHhcCCC
Confidence 3566678899999999999999888888887665543
|
|
| >COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00061 Score=66.29 Aligned_cols=149 Identities=22% Similarity=0.302 Sum_probs=108.1
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHH
Q 020093 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (331)
Q Consensus 78 ~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (331)
+..|.+|.++ +.+++.+.+.+.++++.++++. ..+|||.=+-| |+=+ ....++
T Consensus 25 ~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~-a~~vvl~ldTP-----GGl~----------------~sm~~i 77 (436)
T COG1030 25 EKKVYVIEID-----GAIDPASADYLQRALQSAEEEN-AAAVVLELDTP-----GGLL----------------DSMRQI 77 (436)
T ss_pred CCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCC-CcEEEEEecCC-----CchH----------------HHHHHH
Confidence 5568888886 6699999999999999998764 34555543322 2111 124578
Q ss_pred HHHHHcCCCcEEEEE---cCccccchhhhhhcccEEEEeCCceeecCCCCccC---CCCch-HHHHHHHh------hC--
Q 020093 158 QVQIRRLPKPVIAMV---AGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGS---FDAGY-GSSIMSRL------VG-- 222 (331)
Q Consensus 158 ~~~l~~~~kPvIAav---~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl---~p~~g-~~~~L~r~------vG-- 222 (331)
.+.|.+.+.|||..| .+.|..+|.-++++||+..+++.+.+|-..+-.+- .+... ....+..+ -|
T Consensus 78 v~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN 157 (436)
T COG1030 78 VRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRN 157 (436)
T ss_pred HHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCC
Confidence 889999999988888 34699999999999999999999999876544332 11111 12222222 22
Q ss_pred HHHHHHHHHcCCCCCHHHHHhcCcccEecCC
Q 020093 223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 223 ~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~ 253 (331)
...|.+++.....++++||++.|++|-+..+
T Consensus 158 ~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~ 188 (436)
T COG1030 158 PTWAERFVTENLSLTAEEALRQGVIDLIARD 188 (436)
T ss_pred hHHHHHHhhhccCCChhHHHhcCccccccCC
Confidence 3468888889999999999999999988754
|
|
| >PRK07189 malonate decarboxylase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0011 Score=62.27 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=70.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCC----CeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDS----SVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~----~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
|+++-.+.-=..-++....-..+..+++.+.++. -+-+|.|.-.| |+.+.+-. .... ....+..
T Consensus 70 v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG------GaRlqEg~----~~L~--~~a~i~~ 137 (301)
T PRK07189 70 VVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG------GVRLQEAN----AGLA--AIAEIMR 137 (301)
T ss_pred EEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC------CcCccchH----HHHH--HHHHHHH
Confidence 5555555444567888888889999998887654 24566664444 33343210 0000 0011122
Q ss_pred HHHHHHcCCCcEEEEEcCc--cccchhhhhhcccEEEEeCCceeecC
Q 020093 157 LQVQIRRLPKPVIAMVAGY--AVGGGHVLHMVCDLTIAADNAIFGQT 201 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~--a~GgG~~Lal~cD~~ia~~~a~f~~p 201 (331)
.+..+... .|+|+.|.|. |+||+..++.+||++|+++++++++.
T Consensus 138 ~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igla 183 (301)
T PRK07189 138 AIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLS 183 (301)
T ss_pred HHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEecc
Confidence 22334444 9999999999 99999999999999999999888873
|
|
| >COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00078 Score=59.30 Aligned_cols=142 Identities=21% Similarity=0.258 Sum_probs=90.0
Q ss_pred EEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEE--EEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHH
Q 020093 84 ITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVII--LTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI 161 (331)
Q Consensus 84 ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vV--l~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l 161 (331)
|.|..| ++..+...+...+-.++.++..+-|. |-+.|+ ...+| ..++..+
T Consensus 30 I~l~g~-----I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG-~V~aG----------------------~AIydtm 81 (200)
T COG0740 30 IFLGGE-----IEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGG-SVTAG----------------------LAIYDTM 81 (200)
T ss_pred EEEeee-----echHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCc-ccchh----------------------HHHHHHH
Confidence 555544 55556666666555555544444343 344442 23333 1355678
Q ss_pred HcCCCcEEEEEcCccccchhhhhhcccEE--EEeCCceeecCCCCccCCCCchHHHH-----------------HHHhhC
Q 020093 162 RRLPKPVIAMVAGYAVGGGHVLHMVCDLT--IAADNAIFGQTGPKVGSFDAGYGSSI-----------------MSRLVG 222 (331)
Q Consensus 162 ~~~~kPvIAav~G~a~GgG~~Lal~cD~~--ia~~~a~f~~pe~~~Gl~p~~g~~~~-----------------L~r~vG 222 (331)
...+.||...+-|.|..-|.-|++++|.. ++.+++++-+-...-|. -+ .++-. +....|
T Consensus 82 ~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~-~G-~a~Di~i~A~ei~~~~~~l~~i~a~~TG 159 (200)
T COG0740 82 QFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGA-QG-QASDIEIHAREILKIKERLNRIYAEHTG 159 (200)
T ss_pred HhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccC-cc-CHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999995 99999998876666332 21 12211 111112
Q ss_pred HHH--HHHHHHcCCCCCHHHHHhcCcccEecCCCc
Q 020093 223 PKK--AREMWFLARFYTAEEAEKMGLVNTVVPLEK 255 (331)
Q Consensus 223 ~~~--a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~ 255 (331)
... -...+-....++|+||+++||||+|....+
T Consensus 160 q~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 160 QTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred CCHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence 211 222333456899999999999999987654
|
|
| >CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0038 Score=58.31 Aligned_cols=156 Identities=17% Similarity=0.165 Sum_probs=95.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHH
Q 020093 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ 160 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (331)
|+++-.+--=..-++....-+.+.++++.+.+. .+=+|++...| |+-+.+ +...... .......+..
T Consensus 135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~-rlPlV~l~~SG------GARmQE----g~~sL~q--mak~saa~~~ 201 (296)
T CHL00174 135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNE-SLPLIIVCASG------GARMQE----GSLSLMQ--MAKISSALYD 201 (296)
T ss_pred EEEEEECCcccccCcCHHHHHHHHHHHHHHHHc-CCCEEEEECCC------Cccccc----cchhhhh--hHHHHHHHHH
Confidence 444444443356788888889999999888654 35567776554 333322 1000000 0011111222
Q ss_pred -HHcCCCcEEEEEcCccccchhhh-hhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCH
Q 020093 161 -IRRLPKPVIAMVAGYAVGGGHVL-HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTA 238 (331)
Q Consensus 161 -l~~~~kPvIAav~G~a~GgG~~L-al~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a 238 (331)
...-..|.|+++.|+|.||+... ++.||++|+.+++.+++...++ .-..+|.. +.-+.=++
T Consensus 202 ~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPrV-----------Ie~t~ge~------lpe~fq~a 264 (296)
T CHL00174 202 YQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRV-----------IEQTLNKT------VPEGSQAA 264 (296)
T ss_pred HHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHHH-----------HHHhcCCc------CCcccccH
Confidence 23567999999999999998765 7779999998899887643221 01111110 11122346
Q ss_pred HHHHhcCcccEecCCCcHHHHHHHHHHH
Q 020093 239 EEAEKMGLVNTVVPLEKLEQETIKWSRE 266 (331)
Q Consensus 239 ~eA~~~GLv~~vv~~~~l~~~a~~~a~~ 266 (331)
+-.++-|+||.||+..+|.+...++.+-
T Consensus 265 e~l~~~G~vD~iV~r~~lr~~l~~ll~~ 292 (296)
T CHL00174 265 EYLFDKGLFDLIVPRNLLKGVLSELFQL 292 (296)
T ss_pred HHHHhCcCceEEEcHHHHHHHHHHHHHh
Confidence 6678899999999999988877766554
|
|
| >PRK12552 ATP-dependent Clp protease-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0016 Score=58.43 Aligned_cols=142 Identities=18% Similarity=0.256 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHHhcccCC---CeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 020093 95 FRPHTVKELIRAFNDARDDS---SVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (331)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~---~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa 171 (331)
++.++.+.+...|-.++.++ +|.+ -|-+.|+ ...+|-=+... .....++..|...+-||...
T Consensus 49 ~~~~~a~~iiaqLl~L~~~~~~k~I~l-yINSpGG-sv~~G~~iG~v-------------~~glaIyD~m~~ik~~V~Tv 113 (222)
T PRK12552 49 VGMDVTELIIAQLLYLEFDDPEKPIYF-YINSTGT-SWYTGDAIGFE-------------TEAFAICDTMRYIKPPVHTI 113 (222)
T ss_pred hhHhHHHHHHHHHHHHhccCCCCCEEE-EEeCCCC-Ccccccccccc-------------ccHHHHHHHHHhcCCCeEEE
Confidence 34448888887777775443 3433 3455554 33333000000 01224556777888899999
Q ss_pred EcCccccchhhhhhcccE--EEEeCCceeecCCCCccCCCCchHHHH-----------------HHHhhCH--HHHHHHH
Q 020093 172 VAGYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSSI-----------------MSRLVGP--KKAREMW 230 (331)
Q Consensus 172 v~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~-----------------L~r~vG~--~~a~~l~ 230 (331)
+-|.|.+.+.-|++++|- |++.++++|-+-....|.. +-..-. +.+..|. ..-.+++
T Consensus 114 ~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~--G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~ 191 (222)
T PRK12552 114 CIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGAR--GQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDT 191 (222)
T ss_pred EEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHh
Confidence 999999999999999996 9999999999877665532 111211 1111121 1223333
Q ss_pred HcCCCCCHHHHHhcCcccEecCC
Q 020093 231 FLARFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 231 ltG~~~~a~eA~~~GLv~~vv~~ 253 (331)
-.-..++|+||+++||||+|+..
T Consensus 192 ~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 192 DRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred cCCCcCCHHHHHHcCCCcEEecc
Confidence 34467999999999999999865
|
|
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0047 Score=62.43 Aligned_cols=170 Identities=15% Similarity=0.184 Sum_probs=107.5
Q ss_pred CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~-~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
+|.-.-|.-|+|. ..-+++....+...+.++.+++ .++=+|.|.-.++ |..|.+-.. ... .....+
T Consensus 313 ~G~~V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~-~~lPlV~lvDs~G--~~~g~~~E~---------~g~-~~~~a~ 379 (512)
T TIGR01117 313 NGQSVGIIANQPKVMAGCLDIDSSDKIARFIRFCDA-FNIPIVTFVDVPG--FLPGVNQEY---------GGI-IRHGAK 379 (512)
T ss_pred CCEEEEEEEeccccccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCcC--ccccHHHHH---------HHH-HHHHHH
Confidence 4444444555554 3456999999999999998775 4566777766552 555533210 111 113446
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhhc-----ccEEEEeCCceeecCCCCccCCCCchHHHHHHHh-hC----HHHH
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMV-----CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL-VG----PKKA 226 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal~-----cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~-vG----~~~a 226 (331)
++..+.....|.|+.|-|.+.|||+ ++++ +|++++.+++.+++ .++-+++..+.+. +. ...+
T Consensus 380 ~~~a~~~~~vP~isvi~g~~~Gga~-~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~ 451 (512)
T TIGR01117 380 VLYAYSEATVPKVTIITRKAYGGAY-LAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAAT 451 (512)
T ss_pred HHHHHHhCCCCEEEEEcCCCchHHH-HHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHH
Confidence 6778888999999999999988865 4443 89999999987776 2223333333221 11 1111
Q ss_pred HHHH---HcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHh
Q 020093 227 REMW---FLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREIL 268 (331)
Q Consensus 227 ~~l~---ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la 268 (331)
+... +.-+..++..+.+.|+||.|+++.++.....++.+.+.
T Consensus 452 ~~~~~~~~~~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~~l~~~~ 496 (512)
T TIGR01117 452 RKQKIAEYREEFANPYKAAARGYVDDVIEPKQTRPKIVNALAMLE 496 (512)
T ss_pred HHHHHHHHHHhhcCHHHHHhcCCCCeeEChHHHHHHHHHHHHHHh
Confidence 1111 12235578899999999999999998877666665543
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0041 Score=62.69 Aligned_cols=150 Identities=20% Similarity=0.252 Sum_probs=95.2
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccc--cccchhcCCCcchhhhhhhhHHHHH
Q 020093 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGG--DQALRTRDGYADYENFGRLNVLDLQ 158 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~--Dl~~~~~~~~~~~~~~~~~~~~~l~ 158 (331)
+.++-.+.--...++.......+..+++.+.+.. +-+|.|.-.| |+ ++.+-.. .... .-.+..-.
T Consensus 59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~dsg------Ga~~r~~eg~~----~l~~--~g~i~~~~ 125 (493)
T PF01039_consen 59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALENG-LPLVYLVDSG------GAFLRMQEGVE----SLMG--MGRIFRAI 125 (493)
T ss_dssp EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEEES------SBCGGGGGHHH----HHHH--HHHHHHHH
T ss_pred EEEEEeccceecCCCCcccceeeehHHHHHHHcC-CCcEEecccc------ccccccchhhh----hhhh--hHHHHHHH
Confidence 4444444444567899999999999999887663 4455554323 33 3332110 0000 11122333
Q ss_pred HHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCC-ceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCC
Q 020093 159 VQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT 237 (331)
Q Consensus 159 ~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~ 237 (331)
..+.. ..|+|++|.|.|.|||..++..||++|+.++ +.+++.. +...+ ..+|+.++
T Consensus 126 ~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~G--------------------P~vv~--~~~Ge~~~ 182 (493)
T PF01039_consen 126 ARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLAG--------------------PRVVE--SATGEEVD 182 (493)
T ss_dssp HHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESST--------------------HHHHH--HHHSSCTS
T ss_pred HHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEecc--------------------ccccc--cccCcccc
Confidence 45556 9999999999999999999999999999987 8777521 11111 24578888
Q ss_pred HHHH-------HhcCcccEecCCCcHHHHHHHHHHHHhc
Q 020093 238 AEEA-------EKMGLVNTVVPLEKLEQETIKWSREILR 269 (331)
Q Consensus 238 a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~ 269 (331)
.++. ..-|.+|.++++|+ .+.+.++++.+
T Consensus 183 ~~~lgG~~~h~~~sG~~d~v~~de~---~a~~~ir~~ls 218 (493)
T PF01039_consen 183 SEELGGADVHAAKSGVVDYVVDDEE---DALAQIRRLLS 218 (493)
T ss_dssp HHHHHBHHHHHHTSSSSSEEESSHH---HHHHHHHHHHH
T ss_pred chhhhhhhhhcccCCCceEEEechH---HHHHHHHHhhc
Confidence 7763 47899999998764 34444444443
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0018 Score=52.54 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=50.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHHHHHHhCChhHHHHHHHHhc-C-CCCCCCCC
Q 020093 259 ETIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATLIFYGTEEGSEGKTAFVE-R-RRPDFLKF 327 (331)
Q Consensus 259 ~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~s~d~~egi~afle-k-r~p~f~~~ 327 (331)
.+.+..+.|..+||.++..+-+.++.... ...+...+|......+...+||.||++|-+- | +.|+|+..
T Consensus 32 ~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~LIDKd~~P~W~p~ 103 (118)
T PF13766_consen 32 WAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALLIDKDKNPKWSPA 103 (118)
T ss_dssp HHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHTTS-------SSS
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCCCC
Confidence 35566677889999999999999998765 3456667888888888889999999999984 4 77999764
|
|
| >COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.013 Score=53.73 Aligned_cols=162 Identities=16% Similarity=0.215 Sum_probs=106.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHH
Q 020093 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ 160 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (331)
++...++--=..-++..-.=+.+..+++.+-++ .+.+|+++..|+ .-+.|-. ..-.........+.+
T Consensus 124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSGG------ARMQEg~------lSLMQMaktsaAl~~ 190 (294)
T COG0777 124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASGG------ARMQEGI------LSLMQMAKTSAALKR 190 (294)
T ss_pred EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCcc------hhHhHHH------HHHHHHHHHHHHHHH
Confidence 444455433334667777778888888887655 478899988773 2222100 000111223345567
Q ss_pred HHcCCCcEEEEEcCccccch-hhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHH
Q 020093 161 IRRLPKPVIAMVAGYAVGGG-HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE 239 (331)
Q Consensus 161 l~~~~kPvIAav~G~a~GgG-~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~ 239 (331)
+.....|.|+.+..+..||= +.+++..|+.||.+.|.+||...++= -+ .++ +-+-. ..=+++
T Consensus 191 l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVI-------EQ----Tir-----e~LPe-gfQ~aE 253 (294)
T COG0777 191 LSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVI-------EQ----TIR-----EKLPE-GFQTAE 253 (294)
T ss_pred HHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchhh-------hh----hhc-----ccCCc-chhhHH
Confidence 88889999999999999984 68999999999999999998654431 00 011 10110 122455
Q ss_pred HHHhcCcccEecCCCcHHHHHHHHHHHHhccCH
Q 020093 240 EAEKMGLVNTVVPLEKLEQETIKWSREILRNSP 272 (331)
Q Consensus 240 eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~ 272 (331)
-.++-|+||.||+..++......+...+...++
T Consensus 254 fLlehG~iD~iv~R~elr~tla~ll~~~~~~~~ 286 (294)
T COG0777 254 FLLEHGMIDMIVHRDELRTTLASLLAKLTPQPA 286 (294)
T ss_pred HHHHcCCceeeecHHHHHHHHHHHHHHhCCCCC
Confidence 678899999999999988888777777665543
|
|
| >COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.005 Score=56.81 Aligned_cols=90 Identities=23% Similarity=0.357 Sum_probs=66.4
Q ss_pred HHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcC
Q 020093 154 VLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLA 233 (331)
Q Consensus 154 ~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG 233 (331)
+..-+..+.+++.|+||.|=|---+||+--...+|.+.+-++++|+. +++-|.+..|.+ -..+|.+.. ..
T Consensus 177 IA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV-------isPEG~AsILWk--D~~ka~eAA-e~ 246 (317)
T COG0825 177 IARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV-------ISPEGCASILWK--DASKAKEAA-EA 246 (317)
T ss_pred HHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee-------cChhhhhhhhhc--ChhhhHHHH-HH
Confidence 33444578899999999999987777765555679999999999986 333444555554 244555443 34
Q ss_pred CCCCHHHHHhcCcccEecCC
Q 020093 234 RFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 234 ~~~~a~eA~~~GLv~~vv~~ 253 (331)
..++|++.+++|+||.|+|.
T Consensus 247 mkita~dLk~lgiID~II~E 266 (317)
T COG0825 247 MKITAHDLKELGIIDGIIPE 266 (317)
T ss_pred cCCCHHHHHhCCCcceeccC
Confidence 78999999999999999975
|
|
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.05 Score=55.64 Aligned_cols=156 Identities=21% Similarity=0.299 Sum_probs=90.2
Q ss_pred CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~-~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
+|.-..|.-|.+. +..+++....+.+.++++.+.+. .+-+|.|.-.| |+.+.+ ........... -.+..
T Consensus 127 ~Gr~V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~-~lPlV~l~DSg------Garl~~-q~e~~~~~~~~--g~if~ 196 (569)
T PLN02820 127 HGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQC-RLPCIYLVDSG------GANLPR-QAEVFPDRDHF--GRIFY 196 (569)
T ss_pred CCEEEEEEEECCCccCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCC------CcCCcc-cccccchHhHH--HHHHH
Confidence 4433334444433 56889999999999999888765 35566665444 223321 00000000000 01112
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeC-CceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCC
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD-NAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF 235 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~ 235 (331)
....+.....|.|++|-|.|.|||..+...||++|+++ ++.+++. |+...+ ..+|+.
T Consensus 197 ~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~a--------------------GP~vV~--~~~Ge~ 254 (569)
T PLN02820 197 NQARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLA--------------------GPPLVK--AATGEE 254 (569)
T ss_pred HHHHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEec--------------------CHHHHH--hhcCcc
Confidence 22234556799999999999999999999999999996 4656541 111111 134555
Q ss_pred CCHHHH-----H--hcCcccEecCCCcHHHHHHHHHHHHh
Q 020093 236 YTAEEA-----E--KMGLVNTVVPLEKLEQETIKWSREIL 268 (331)
Q Consensus 236 ~~a~eA-----~--~~GLv~~vv~~~~l~~~a~~~a~~la 268 (331)
++++|. + .-|.++.++++|. ++..+++++.
T Consensus 255 v~~eeLGGa~~h~~~sGv~d~~~~de~---~a~~~~R~ll 291 (569)
T PLN02820 255 VSAEDLGGADVHCKVSGVSDHFAQDEL---HALAIGRNIV 291 (569)
T ss_pred cCHHHhCCHHHhcccccccccccCchH---HHHHHHHHHH
Confidence 666553 2 4788888887653 3444444443
|
|
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.03 Score=56.64 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=87.9
Q ss_pred CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~-~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
++.-..|.-+... +.-+++....+.+.++++.+.+.. +-+|.|.-.| |+.+.+-. ....... .+..
T Consensus 80 ~Gr~v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSg------Garm~eg~----~~l~~~~--~~~~ 146 (512)
T TIGR01117 80 DGRLVYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSG------GARIQEAV----DALKGYG--DIFY 146 (512)
T ss_pred CCEEEEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCC------CCCccccc----hhhhhHH--HHHH
Confidence 4443334444333 467888888899999988887654 4455554433 33332210 0000000 1111
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCc-eeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCC
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA-IFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF 235 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a-~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~ 235 (331)
.. ....-..|+|++|.|.|.||+......||++|+.+++ .+++.. |++| + ..+|+.
T Consensus 147 ~~-~~~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~aG---------------P~vv-----~--~~~Ge~ 203 (512)
T TIGR01117 147 RN-TIASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFITG---------------PQVI-----K--TVTGEE 203 (512)
T ss_pred HH-HHHcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEecC---------------hHHH-----H--hhcCcc
Confidence 11 1233458999999999999998888899999999864 455411 1111 1 134455
Q ss_pred CCHHHH-------HhcCcccEecCCC-cHHHHHHHHHHHH
Q 020093 236 YTAEEA-------EKMGLVNTVVPLE-KLEQETIKWSREI 267 (331)
Q Consensus 236 ~~a~eA-------~~~GLv~~vv~~~-~l~~~a~~~a~~l 267 (331)
++++|. ..-|.+|.++++| +..+.++++...+
T Consensus 204 v~~e~lGGa~~h~~~sGv~d~~~~de~ea~~~~r~~ls~l 243 (512)
T TIGR01117 204 VTAEQLGGAMAHNSVSGVAHFIAEDDDDCIMLIRRLLSFL 243 (512)
T ss_pred cchhhcchHHHhccccceeEEecCChHHHHHHHHHHHHhC
Confidence 555443 3589999998765 3444444444444
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.095 Score=52.66 Aligned_cols=149 Identities=19% Similarity=0.249 Sum_probs=88.0
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHH
Q 020093 82 AKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQI 161 (331)
Q Consensus 82 ~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l 161 (331)
...--+.+.+.-++..-..+.+..+.+.+.++..-.+.+..+. |+.+.+- ......+. .++.-..++
T Consensus 94 ~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsg-------Gari~~~----v~~l~g~g--~iF~~~a~~ 160 (526)
T COG4799 94 FVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSG-------GARIQEG----VPSLAGYG--RIFYRNARA 160 (526)
T ss_pred EEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEccc-------ccccccC----ccccccch--HHHHHHHHh
Confidence 3333334556777887777888888877776543334344443 3444321 11111111 111222234
Q ss_pred HcCCCcEEEEEcCccccchhhhhhcccEEEEeCC-ceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHH
Q 020093 162 RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEE 240 (331)
Q Consensus 162 ~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~e 240 (331)
... .|.|++|-|.|.|||.-+...||++|+.++ +++.+. |+...+ .-||+.++++|
T Consensus 161 Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~~~mflt--------------------GP~~ik--~vtGe~V~~e~ 217 (526)
T COG4799 161 SGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQSYMFLT--------------------GPPVIK--AVTGEEVSAEE 217 (526)
T ss_pred ccC-CCEEEEEEecCcccccccccccceEEEEcCCccEEee--------------------CHHHHH--hhcCcEeehhh
Confidence 445 999999999999999999999999999988 444331 121111 24566666665
Q ss_pred -------HHhcCcccEecCCCcHHHHHHHHHHHHhc
Q 020093 241 -------AEKMGLVNTVVPLEKLEQETIKWSREILR 269 (331)
Q Consensus 241 -------A~~~GLv~~vv~~~~l~~~a~~~a~~la~ 269 (331)
+..-|.++.+..+| ..|.++++++.+
T Consensus 218 LGGa~vh~~~sGva~~~a~dd---~~Ai~~vr~~ls 250 (526)
T COG4799 218 LGGAQVHARKSGVADLLAEDD---EDAIELVRRLLS 250 (526)
T ss_pred ccchhhhcccccceeeeecCH---HHHHHHHHHHHH
Confidence 33458888888664 355666666554
|
|
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.17 Score=51.07 Aligned_cols=171 Identities=18% Similarity=0.210 Sum_probs=101.2
Q ss_pred CCCEEEEEEcCCCCCC-CCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRPDRRN-AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~~~N-al~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
+|.-.-|.-|+|..+. +++.+-.....+.++.++. -++=+|.|.-.. .|-.|-+-.. ... .....+
T Consensus 292 ~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dtp--Gf~~g~~~E~---------~g~-~~~ga~ 358 (493)
T PF01039_consen 292 GGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDTP--GFMPGPEAER---------AGI-IRAGAR 358 (493)
T ss_dssp TTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEEC--EB--SHHHHH---------TTH-HHHHHH
T ss_pred CCcceEEEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeecc--cccccchhhh---------cch-HHHHHH
Confidence 5544445666665433 6999999999999988886 467777776543 4665532221 111 123457
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhhcc----cEEEEeCCceeecCCCCccCCCCchHHHHHHHhh-------C--H
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC----DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV-------G--P 223 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal~c----D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v-------G--~ 223 (331)
++.++..+..|+|..|-|.+.|||..-...+ |+++|.++++++. +++.+++..+.+.- | .
T Consensus 359 ~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~v-------m~~e~a~~i~~~~~~~~~~~~~~~~ 431 (493)
T PF01039_consen 359 LLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGV-------MGPEGAASILYRDELEAAEAEGADP 431 (493)
T ss_dssp HHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEES-------S-HHHHHHHHTHHHHHHSCHCCHSH
T ss_pred HHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeee-------cChhhhheeeehhhhhhhhcccchh
Confidence 8889999999999999999999887444444 7888888777665 43333333332211 0 0
Q ss_pred H--HHHHHHHc-CCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHh
Q 020093 224 K--KAREMWFL-ARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREIL 268 (331)
Q Consensus 224 ~--~a~~l~lt-G~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la 268 (331)
. ....+--. -+..++..+...|++|.|+++.+.........+-+.
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~l~~~~ 479 (493)
T PF01039_consen 432 EAQRAEKIAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAALEMLW 479 (493)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHHHHHHH
Confidence 0 01111111 122578889999999999999888776665554443
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >PLN02988 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.086 Score=51.43 Aligned_cols=87 Identities=9% Similarity=0.114 Sum_probs=60.4
Q ss_pred HHhcCcccEecCCCcHHH---------------HHHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHHHHHHh
Q 020093 241 AEKMGLVNTVVPLEKLEQ---------------ETIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATLIFY 304 (331)
Q Consensus 241 A~~~GLv~~vv~~~~l~~---------------~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~ 304 (331)
...+..|++++..+.+.+ -+.+..+.|.+.||.++..+.+.+++... ...+...+|......+.
T Consensus 232 ~~~~~~I~~~f~~~~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~ 311 (381)
T PLN02988 232 YHRLDVIDRCFSRRTVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVM 311 (381)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 334667777776544332 23333445678899999999999987653 33455566666666666
Q ss_pred C---ChhHHHHHHHHhc-C-CCCCCCCC
Q 020093 305 G---TEEGSEGKTAFVE-R-RRPDFLKF 327 (331)
Q Consensus 305 ~---s~d~~egi~afle-k-r~p~f~~~ 327 (331)
. ++||.||++|-+- | +.|+|+..
T Consensus 312 ~~~~~~DF~EGVRA~LiDKd~~P~W~p~ 339 (381)
T PLN02988 312 KGEISKDFVEGCRAILVDKDKNPKWEPR 339 (381)
T ss_pred hcCCCchHHHhHHHHhcCCCCCCCCCCC
Confidence 5 6999999999984 5 78999853
|
|
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.99 Score=46.35 Aligned_cols=155 Identities=9% Similarity=0.042 Sum_probs=98.1
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 020093 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (331)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav 172 (331)
-+++.+-.+...+.++.++. -++=+|-|.-.. .|-.|.+-+. ... .....+++.++.....|.|+.|
T Consensus 380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~p--Gf~~G~~~E~---------~G~-~~~~a~l~~A~a~~~VP~isvi 446 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNIT--GFMVGSRSEA---------SGI-AKAGAKMVMAVACAKVPKITII 446 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECC--CCCCCHHHHH---------hhH-HHHHHHHHHHHHhCCCCEEEEE
Confidence 45888888888888887765 467777776554 3666654332 111 2234578888899999999999
Q ss_pred cCccccchhhhhh----cccEEEEeCCceeecCCCCccCCCCchHHHHHHHh-h------------CHHHHH-HH--HHc
Q 020093 173 AGYAVGGGHVLHM----VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL-V------------GPKKAR-EM--WFL 232 (331)
Q Consensus 173 ~G~a~GgG~~Lal----~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~-v------------G~~~a~-~l--~lt 232 (331)
-|.|.|+|..-.+ ..|++++.+++.++. .++.++...+.+. + -...+. +. -..
T Consensus 447 ~g~a~G~g~~aM~g~~~~~d~~~awp~A~i~v-------mg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (569)
T PLN02820 447 VGGSFGAGNYGMCGRAYSPNFLFMWPNARIGV-------MGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAY 519 (569)
T ss_pred ECCcchHHHHHhcCcCCCCCEEEECCCCeEEe-------cCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHH
Confidence 9999998764333 567887777776554 4444445444331 1 111011 10 111
Q ss_pred CCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHH
Q 020093 233 ARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREI 267 (331)
Q Consensus 233 G~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l 267 (331)
-+..++-.|-+.|+||.|+++.+.........+..
T Consensus 520 ~~~~~p~~aa~~~~vD~VIdP~dTR~~l~~~l~~~ 554 (569)
T PLN02820 520 EREANPYYSTARLWDDGVIDPADTRRVLGLCLSAA 554 (569)
T ss_pred HHhCCHHHHHHcCCcCcccCHHHHHHHHHHHHHHh
Confidence 23457777889999999999887666555544433
|
|
| >PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.13 Score=50.60 Aligned_cols=85 Identities=14% Similarity=0.103 Sum_probs=58.5
Q ss_pred HhcCcccEecCCCcHHHH---------------HHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHHHHHHhC
Q 020093 242 EKMGLVNTVVPLEKLEQE---------------TIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATLIFYG 305 (331)
Q Consensus 242 ~~~GLv~~vv~~~~l~~~---------------a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~ 305 (331)
.+..+++.++..+++.+- +.+-.+.|.+.+|.++..+-+.+++... ...+...+|......+..
T Consensus 261 ~~~~~i~~~f~~~d~~ei~~al~~~~~kr~~~wa~~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~ 340 (401)
T PLN02157 261 RRIDLLEKCFSHDTVEEIIDSLEIEAGRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLI 340 (401)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhhcccchHHHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Confidence 345666666665554332 3333445778899999999999987654 334555666665555553
Q ss_pred ---ChhHHHHHHHHhc-C-CCCCCCC
Q 020093 306 ---TEEGSEGKTAFVE-R-RRPDFLK 326 (331)
Q Consensus 306 ---s~d~~egi~afle-k-r~p~f~~ 326 (331)
++||.||++|-+- | +.|+|+.
T Consensus 341 ~~~~~DF~EGVRA~LiDKd~~P~W~p 366 (401)
T PLN02157 341 GPMSGNFCEGVRARLIDKDEAPKWDP 366 (401)
T ss_pred cCCCchHHHHHHHHHcCCCCCCCCCC
Confidence 6999999999984 4 7899985
|
|
| >KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.93 E-value=2.2 Score=38.97 Aligned_cols=133 Identities=18% Similarity=0.235 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEc
Q 020093 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (331)
Q Consensus 94 al~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~ 173 (331)
.++.++-+.+...|-.++.+++-|=|.+.-+.+ |+++.. -..++..+..+.-||=..+-
T Consensus 100 ~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSP-----GG~vta----------------glAIYDtMq~ik~~V~Tic~ 158 (275)
T KOG0840|consen 100 PIDDDVANLVIAQLLYLDSEDPKKPIYLYINSP-----GGSVTA----------------GLAIYDTMQYIKPDVSTICV 158 (275)
T ss_pred cCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCC-----CCccch----------------hhhHHHHHHhhCCCceeeeh
Confidence 388888888888888888776667777655543 554421 11344566667777777777
Q ss_pred CccccchhhhhhcccEEEEeCCceeecCCCCccCC-CCc----hHHHHHHH---h--------------hCH--HHHHHH
Q 020093 174 GYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSF-DAG----YGSSIMSR---L--------------VGP--KKAREM 229 (331)
Q Consensus 174 G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~-p~~----g~~~~L~r---~--------------vG~--~~a~~l 229 (331)
|.|.+-|.-|..+. +..-+|++|..++=+. |.+ ...-..-+ + .|. ....+-
T Consensus 159 G~Aas~aalLLaaG-----~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d 233 (275)
T KOG0840|consen 159 GLAASMAALLLAAG-----AKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKD 233 (275)
T ss_pred hhHHhHHHHHHhcC-----CCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhh
Confidence 88877776554442 3444555555554332 111 11111111 0 010 001111
Q ss_pred HHcCCCCCHHHHHhcCcccEecC
Q 020093 230 WFLARFYTAEEAEKMGLVNTVVP 252 (331)
Q Consensus 230 ~ltG~~~~a~eA~~~GLv~~vv~ 252 (331)
+-.-+.++|+||++.||||.|+.
T Consensus 234 ~dRd~fmsa~EA~eyGliD~v~~ 256 (275)
T KOG0840|consen 234 MDRDRFMSAEEAKEYGLIDKVID 256 (275)
T ss_pred hcccccCCHHHHHHhcchhhhhc
Confidence 11235699999999999999985
|
|
| >COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=86.84 E-value=14 Score=37.40 Aligned_cols=167 Identities=15% Similarity=0.162 Sum_probs=100.5
Q ss_pred EEEEEEcCCC-CCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHH
Q 020093 81 IAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQV 159 (331)
Q Consensus 81 v~~ItLnrp~-~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~ 159 (331)
|+ |.=|.|. ..-+|+.+-.+.-.+.++.++ -.++=.|.|.-.- .|..|-|-.. ... ..+-..++.
T Consensus 326 VG-iIANqp~~~~G~l~~~sa~KaArFI~~cd-~~~iPlv~L~d~p--GFm~G~~~E~---------~gi-ik~Gakl~~ 391 (526)
T COG4799 326 VG-IIANQPRHLGGVLDIDSADKAARFIRLCD-AFNIPLVFLVDTP--GFMPGTDQEY---------GGI-IKHGAKLLY 391 (526)
T ss_pred EE-EEecCccccccccchHHHHHHHHHHHhhh-ccCCCeEEEeCCC--CCCCChhHHh---------ChH-HHhhhHHHh
Confidence 45 4445554 456888888888888885444 4577788887653 5998876542 111 112346888
Q ss_pred HHHcCCCcEEEEEcCccccchhhh----hhcccEEEEeCCceeecCCCCccCCCCchHHHHHHH-hhCH-HH-H------
Q 020093 160 QIRRLPKPVIAMVAGYAVGGGHVL----HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR-LVGP-KK-A------ 226 (331)
Q Consensus 160 ~l~~~~kPvIAav~G~a~GgG~~L----al~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r-~vG~-~~-a------ 226 (331)
++....+|.|..|-|.+.|||... ++.+|+.+|.+++.++. .-+-|+...+.+ .+.. .+ .
T Consensus 392 A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~a~iaV-------MG~egAv~i~~~k~l~~~~~~~~~~~~~ 464 (526)
T COG4799 392 AVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPTAEIAV-------MGPEGAVSILYRKELAAAERPEEREALL 464 (526)
T ss_pred hHhhccCCeEEEEecccccceeeeecCccCCCceeEecCcceeee-------cCHHHHHHHHHHHHhhcccCchhHHHHH
Confidence 999999999999999999999643 34567777777766654 323333333332 1110 00 0
Q ss_pred ---HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHh
Q 020093 227 ---REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREIL 268 (331)
Q Consensus 227 ---~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la 268 (331)
..--+.-+...+--|.+.|++|.|+++.+...........+.
T Consensus 465 ~~~~~~eY~~~~~~p~~aa~r~~iD~vI~p~~tR~~L~~~l~~~~ 509 (526)
T COG4799 465 RKQLIAEYEEQFSNPYYAAERGYIDAVIDPADTRAVLGRALSALA 509 (526)
T ss_pred HHHHHHHHHHhccchHHHHHhCCCCcccCHHHHHHHHHHHHHHHh
Confidence 001111222455556778899999888765554444333333
|
|
| >PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3 | Back alignment and domain information |
|---|
Probab=81.82 E-value=3.2 Score=39.22 Aligned_cols=79 Identities=24% Similarity=0.357 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcccCC---CeeEEEE-EeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 020093 97 PHTVKELIRAFNDARDDS---SVGVIIL-TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (331)
Q Consensus 97 ~~~~~eL~~al~~~~~d~---~v~~vVl-~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav 172 (331)
.....++.++|+.+.... .+-+||| +|.|. + -||. .++-..+.++|..++.|||++|
T Consensus 54 ~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs--~---eDL~--------------~FN~e~varai~~~~~PvisaI 114 (319)
T PF02601_consen 54 EGAAASIVSALRKANEMGQADDFDVIIIIRGGGS--I---EDLW--------------AFNDEEVARAIAASPIPVISAI 114 (319)
T ss_pred cchHHHHHHHHHHHHhccccccccEEEEecCCCC--h---HHhc--------------ccChHHHHHHHHhCCCCEEEec
Confidence 345677888888887654 5667766 44331 1 1332 2344578889999999999976
Q ss_pred cCccccchhhhhhcccEEEEeCCc
Q 020093 173 AGYAVGGGHVLHMVCDLTIAADNA 196 (331)
Q Consensus 173 ~G~a~GgG~~Lal~cD~~ia~~~a 196 (331)
||-.=- .-.=+.||+|..|+++
T Consensus 115 -GHe~D~-ti~D~vAd~ra~TPta 136 (319)
T PF02601_consen 115 -GHETDF-TIADFVADLRAPTPTA 136 (319)
T ss_pred -CCCCCc-hHHHHHHHhhCCCHHH
Confidence 222111 1234567777777664
|
1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity |
| >TIGR00237 xseA exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Probab=80.76 E-value=3.6 Score=40.87 Aligned_cols=80 Identities=20% Similarity=0.247 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCcc
Q 020093 97 PHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYA 176 (331)
Q Consensus 97 ~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a 176 (331)
.+...++..+++.++..+++-+|||.=.|+ .+ -||. .++-..+.+++..+|.|||++| ||-
T Consensus 169 ~~a~~~i~~al~~~~~~~~~dviii~RGGG-s~---eDL~--------------~Fn~e~~~rai~~~~~Pvis~i-GHe 229 (432)
T TIGR00237 169 EGAVQSIVESIELANTKNECDVLIVGRGGG-SL---EDLW--------------SFNDEKVARAIFLSKIPIISAV-GHE 229 (432)
T ss_pred ccHHHHHHHHHHHhhcCCCCCEEEEecCCC-CH---HHhh--------------hcCcHHHHHHHHcCCCCEEEec-CcC
Confidence 445677788888777655566666633231 11 1332 2344578889999999999976 111
Q ss_pred ccchhhhhhcccEEEEeCCc
Q 020093 177 VGGGHVLHMVCDLTIAADNA 196 (331)
Q Consensus 177 ~GgG~~Lal~cD~~ia~~~a 196 (331)
.-- .-.=+.+|.|..|+.+
T Consensus 230 ~D~-ti~D~vAd~ra~TPta 248 (432)
T TIGR00237 230 TDF-TISDFVADLRAPTPSA 248 (432)
T ss_pred CCc-cHHHHhhhccCCCcHH
Confidence 110 1133567778777654
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 331 | ||||
| 2iex_A | 272 | Crystal Structure Of Dihydroxynapthoic Acid Synthet | 1e-103 | ||
| 4els_A | 285 | Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Co | 1e-101 | ||
| 3t88_A | 289 | Crystal Structure Of Escherichia Coli Menb In Compl | 1e-101 | ||
| 4eml_A | 275 | Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoy | 7e-99 | ||
| 2uzf_A | 273 | Crystal Structure Of Staphylococcus Aureus 1,4-Dihy | 1e-97 | ||
| 3h02_A | 288 | 2.15 Angstrom Resolution Crystal Structure Of Napht | 3e-97 | ||
| 1q51_A | 314 | Crystal Structure Of Mycobacterium Tuberculosis Men | 5e-68 | ||
| 1rjm_A | 339 | Crystal Structure Of Menb (rv0548c) From Mycobacter | 5e-68 | ||
| 3t8a_A | 334 | Crystal Structure Of Mycobacterium Tuberculosis Men | 5e-68 | ||
| 3moy_A | 263 | Crystal Structure Of Probable Enoyl-Coa Hydratase F | 2e-32 | ||
| 1dub_A | 261 | 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph | 2e-30 | ||
| 3q0j_A | 258 | Crystal Structure Of The Mycobacterium Tuberculosis | 3e-30 | ||
| 3pzk_A | 257 | Crystal Structure Of The Mycobacterium Tuberculosis | 4e-30 | ||
| 3h81_A | 278 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 4e-30 | ||
| 2hw5_A | 286 | The Crystal Structure Of Human Enoyl-Coenzyme A (Co | 4e-30 | ||
| 3kqf_A | 265 | 1.8 Angstrom Resolution Crystal Structure Of Enoyl- | 1e-29 | ||
| 1mj3_A | 260 | Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata | 1e-29 | ||
| 1ey3_A | 258 | Structure Of Enoyl-Coa Hydratase Complexed With The | 1e-29 | ||
| 2pbp_A | 258 | Crystal Structure Of Enoyl-Coa Hydrates Subunit I ( | 9e-29 | ||
| 1uiy_A | 253 | Crystal Structure Of Enoyl-Coa Hydratase From Therm | 9e-28 | ||
| 3t3w_A | 279 | Crystal Structure Of Probable Enoyl-Coa Hydratase F | 1e-25 | ||
| 3ome_A | 282 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 4e-25 | ||
| 3myb_A | 286 | Crystal Structure Of Enoyl-Coa Hydratase Mycobacter | 1e-24 | ||
| 2vsu_F | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 1e-24 | ||
| 4fzw_A | 258 | Crystal Structure Of The Paaf-paag Hydratase-isomer | 1e-24 | ||
| 2vss_F | 276 | Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C | 2e-24 | ||
| 2vsu_E | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 3e-24 | ||
| 2vsu_A | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 3e-24 | ||
| 2vsu_C | 275 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 3e-24 | ||
| 2vss_E | 276 | Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C | 4e-24 | ||
| 2j5i_A | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 5e-24 | ||
| 2j5i_B | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 5e-24 | ||
| 2j5i_I | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 5e-24 | ||
| 3he2_A | 264 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 6e-24 | ||
| 4di1_A | 277 | Crystal Structure Of Enoyl-Coa Hydratase Echa17 Fro | 9e-23 | ||
| 2vx2_A | 287 | Crystal Structure Of Human Enoyl Coenzyme A Hydrata | 4e-22 | ||
| 3r0o_A | 273 | Crystal Structure Of Carnitinyl-Coa Hydratase From | 5e-22 | ||
| 3hrx_A | 254 | Crystal Structure Of Phenylacetic Acid Degradation | 1e-21 | ||
| 4f47_A | 278 | The Structure Of Enoyl-Coa Hydratase Echa19 From My | 2e-21 | ||
| 1jxz_A | 269 | Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe | 3e-21 | ||
| 3i47_A | 268 | Crystal Structure Of Putative Enoyl Coa HydrataseIS | 5e-21 | ||
| 1nzy_A | 269 | 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo | 9e-21 | ||
| 1nzy_B | 269 | 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo | 1e-20 | ||
| 1ef8_A | 261 | Crystal Structure Of Methylmalonyl Coa Decarboxylas | 2e-20 | ||
| 3tlf_A | 274 | Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS | 4e-20 | ||
| 3qyr_A | 253 | Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M | 6e-20 | ||
| 3p85_A | 270 | Crystal Structure Enoyl-Coa Hydratase From Mycobact | 7e-20 | ||
| 3p5m_A | 255 | Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS | 8e-19 | ||
| 3qka_A | 261 | Crystal Structure Of Enoyl-Coa Hydratase Echa5 From | 1e-18 | ||
| 3sll_A | 290 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 5e-18 | ||
| 3rsi_A | 265 | The Structure Of A Putative Enoyl-Coa HydrataseISOM | 7e-18 | ||
| 3trr_A | 256 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 1e-17 | ||
| 3qre_A | 298 | Crystal Structure Of An Enoyl-Coa Hydratase Echa12_ | 5e-17 | ||
| 3r9t_A | 267 | Structure Of Echa1_1 From Mycobacterium Paratubercu | 7e-17 | ||
| 3r9s_A | 267 | Structure Of A Carnitinyl-Coa Dehydratase From Myco | 8e-17 | ||
| 2f6q_A | 280 | The Crystal Structure Of Human Peroxisomal Delta3, | 2e-16 | ||
| 2ppy_A | 265 | Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) F | 3e-16 | ||
| 3qxz_A | 265 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 4e-16 | ||
| 4fzw_C | 274 | Crystal Structure Of The Paaf-paag Hydratase-isomer | 7e-16 | ||
| 3pea_A | 261 | Crystal Structure Of Enoyl-Coa Hydratase From Bacil | 8e-16 | ||
| 3pe8_A | 256 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 1e-15 | ||
| 3swx_A | 265 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 5e-15 | ||
| 1hzd_A | 272 | Crystal Structure Of Human Auh Protein, An Rna-Bind | 7e-15 | ||
| 2ej5_A | 257 | Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr | 1e-14 | ||
| 3oc7_A | 267 | Crystal Structure Of An Enoyl-Coa Hydratase From My | 1e-14 | ||
| 3fdu_A | 266 | Crystal Structure Of A Putative Enoyl-Coa Hydratase | 2e-14 | ||
| 3qk8_A | 272 | Crystal Structure Of Enoyl-Coa Hydratase Echa15 Fro | 5e-14 | ||
| 2vre_A | 296 | Crystal Structure Of Human Peroxisomal Delta3,5, De | 2e-13 | ||
| 2fbm_A | 291 | Acetyltransferase Domain Of Cdy1 Length = 291 | 3e-13 | ||
| 3qmj_A | 256 | Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr | 4e-13 | ||
| 3lke_A | 263 | Crystal Structure Of Enoyl-Coa Hydratase From Bacil | 4e-13 | ||
| 3r9q_A | 262 | Structure Of A Probable Enoyl-Coa HydrataseISOMERAS | 3e-12 | ||
| 2fw2_A | 260 | Catalytic Domain Of Cdy Length = 260 | 4e-12 | ||
| 3qxi_A | 265 | Crystal Structure Of Enoyl-Coa Hydratase Echa1 From | 4e-12 | ||
| 1dci_A | 275 | Dienoyl-Coa Isomerase Length = 275 | 7e-12 | ||
| 2q35_A | 243 | Crystal Structure Of The Y82f Variant Of Ech2 Decar | 5e-11 | ||
| 3l3s_A | 263 | Crystal Structure Of An Enoyl-Coa HydrotaseISOMERAS | 4e-10 | ||
| 2pg8_A | 417 | Crystal Structure Of R254k Mutanat Of Dpgc With Bou | 5e-10 | ||
| 2np9_A | 440 | Crystal Structure Of A Dioxygenase In The Crotonase | 6e-10 | ||
| 2q2x_A | 243 | Crystal Structure Of The Ech2 Decarboxylase Domain | 1e-09 | ||
| 3zwb_A | 742 | Crystal Structure Of Rat Peroxisomal Multifunctiona | 2e-09 | ||
| 3q1t_A | 278 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 3e-09 | ||
| 2x58_A | 727 | The Crystal Structure Of Mfe1 Liganded With Coa Len | 3e-09 | ||
| 3zw8_A | 742 | Crystal Structure Of Rat Peroxisomal Multifunctiona | 4e-09 | ||
| 3rrv_A | 276 | Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS | 8e-09 | ||
| 3hin_A | 275 | Crystal Structure Of Putative Enoyl-Coa Hydratase F | 1e-08 | ||
| 2gtr_A | 261 | Human Chromodomain Y-Like Protein Length = 261 | 1e-08 | ||
| 3njb_A | 333 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 6e-08 | ||
| 3gkb_A | 287 | Crystal Structure Of A Putative Enoyl-coa Hydratase | 7e-08 | ||
| 1wdk_A | 715 | Fatty Acid Beta-Oxidation Multienzyme Complex From | 7e-08 | ||
| 3g64_A | 279 | Crystal Structure Of Putative Enoyl-Coa Hydratase F | 8e-08 | ||
| 3bpt_A | 363 | Crystal Structure Of Human Beta-Hydroxyisobutyryl-C | 1e-07 | ||
| 2a7k_A | 250 | Carboxymethylproline Synthase (carb) From Pectobact | 1e-07 | ||
| 2wtb_A | 725 | Arabidopsis Thaliana Multifuctional Protein, Mfp2 L | 4e-07 | ||
| 1sg4_A | 260 | Crystal Structure Of Human Mitochondrial Delta3-del | 5e-07 | ||
| 3h0u_A | 289 | Crystal Structure Of A Putative Enoyl-Coa Hydratase | 6e-07 | ||
| 1wz8_A | 264 | Crystal Structure Of Probable Enoyl-Coa Dehydratase | 7e-07 | ||
| 4j2u_A | 365 | Crystal Structure Of An Enoyl-coa Hydratase From Rh | 9e-07 | ||
| 2j5g_D | 263 | The Native Structure Of A Beta-Diketone Hydrolase F | 1e-06 | ||
| 2j5g_A | 263 | The Native Structure Of A Beta-Diketone Hydrolase F | 1e-06 | ||
| 3isa_A | 254 | Crystal Structure Of Putative Enoyl-Coa HydrataseIS | 7e-06 | ||
| 1xx4_A | 261 | Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Co | 8e-06 | ||
| 4hdt_A | 353 | Crystal Structure Of A Carnitinyl-Coa Dehydratase F | 1e-05 | ||
| 3m6m_A | 305 | Crystal Structure Of Rpff Complexed With Rec Domain | 4e-04 |
| >pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272 | Back alignment and structure |
|
| >pdb|4ELS|A Chain A, Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Coenzyme A Synthases (Menb) In Complex With Bicarbonate Length = 285 | Back alignment and structure |
|
| >pdb|3T88|A Chain A, Crystal Structure Of Escherichia Coli Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 289 | Back alignment and structure |
|
| >pdb|4EML|A Chain A, Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoyl-Coenzyme A Synthase (Menb) In Complex With Bicarbonate Length = 275 | Back alignment and structure |
|
| >pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273 | Back alignment and structure |
|
| >pdb|3H02|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of Naphthoate Synthase From Salmonella Typhimurium. Length = 288 | Back alignment and structure |
|
| >pdb|1Q51|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Menb In Complex With Acetoacetyl-Coenzyme A, A Key Enzyme In Vitamin K2 Biosynthesis Length = 314 | Back alignment and structure |
|
| >pdb|1RJM|A Chain A, Crystal Structure Of Menb (rv0548c) From Mycobacterium Tuberculosis Length = 339 | Back alignment and structure |
|
| >pdb|3T8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 334 | Back alignment and structure |
|
| >pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263 | Back alignment and structure |
|
| >pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261 | Back alignment and structure |
|
| >pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258 | Back alignment and structure |
|
| >pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257 | Back alignment and structure |
|
| >pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278 | Back alignment and structure |
|
| >pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286 | Back alignment and structure |
|
| >pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265 | Back alignment and structure |
|
| >pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260 | Back alignment and structure |
|
| >pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258 | Back alignment and structure |
|
| >pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258 | Back alignment and structure |
|
| >pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253 | Back alignment and structure |
|
| >pdb|3T3W|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycobacterium Thermoresistibile Length = 279 | Back alignment and structure |
|
| >pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 282 | Back alignment and structure |
|
| >pdb|3MYB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Mycobacterium Smegm Length = 286 | Back alignment and structure |
|
| >pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276 | Back alignment and structure |
|
| >pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258 | Back alignment and structure |
|
| >pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276 | Back alignment and structure |
|
| >pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276 | Back alignment and structure |
|
| >pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276 | Back alignment and structure |
|
| >pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275 | Back alignment and structure |
|
| >pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276 | Back alignment and structure |
|
| >pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264 | Back alignment and structure |
|
| >pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From Mycobacterium Marinum Length = 277 | Back alignment and structure |
|
| >pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287 | Back alignment and structure |
|
| >pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273 | Back alignment and structure |
|
| >pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254 | Back alignment and structure |
|
| >pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278 | Back alignment and structure |
|
| >pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269 | Back alignment and structure |
|
| >pdb|3I47|A Chain A, Crystal Structure Of Putative Enoyl Coa HydrataseISOMERASE (Crotonase) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 Length = 268 | Back alignment and structure |
|
| >pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269 | Back alignment and structure |
|
| >pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269 | Back alignment and structure |
|
| >pdb|1EF8|A Chain A, Crystal Structure Of Methylmalonyl Coa Decarboxylase Length = 261 | Back alignment and structure |
|
| >pdb|3TLF|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 274 | Back alignment and structure |
|
| >pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253 | Back alignment and structure |
|
| >pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270 | Back alignment and structure |
|
| >pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255 | Back alignment and structure |
|
| >pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261 | Back alignment and structure |
|
| >pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290 | Back alignment and structure |
|
| >pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265 | Back alignment and structure |
|
| >pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256 | Back alignment and structure |
|
| >pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From Mycobacterium Marinum Length = 298 | Back alignment and structure |
|
| >pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267 | Back alignment and structure |
|
| >pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267 | Back alignment and structure |
|
| >pdb|2F6Q|A Chain A, The Crystal Structure Of Human Peroxisomal Delta3, Delta2 Enoyl Coa Isomerase (Peci) Length = 280 | Back alignment and structure |
|
| >pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From Geobacillus Kaustophilus Hta426 Length = 265 | Back alignment and structure |
|
| >pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265 | Back alignment and structure |
|
| >pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274 | Back alignment and structure |
|
| >pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261 | Back alignment and structure |
|
| >pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256 | Back alignment and structure |
|
| >pdb|3SWX|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265 | Back alignment and structure |
|
| >pdb|1HZD|A Chain A, Crystal Structure Of Human Auh Protein, An Rna-Binding Homologue Of Enoyl-Coa Hydratase Length = 272 | Back alignment and structure |
|
| >pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257 | Back alignment and structure |
|
| >pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267 | Back alignment and structure |
|
| >pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Acinetobacter Baumannii Length = 266 | Back alignment and structure |
|
| >pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From Mycobacterium Marinum In Complex With An Unknown Ligand Length = 272 | Back alignment and structure |
|
| >pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296 | Back alignment and structure |
|
| >pdb|2FBM|A Chain A, Acetyltransferase Domain Of Cdy1 Length = 291 | Back alignment and structure |
|
| >pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256 | Back alignment and structure |
|
| >pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Halodurans Length = 263 | Back alignment and structure |
|
| >pdb|3R9Q|A Chain A, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 262 | Back alignment and structure |
|
| >pdb|2FW2|A Chain A, Catalytic Domain Of Cdy Length = 260 | Back alignment and structure |
|
| >pdb|3QXI|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa1 From Mycobacterium Marinum Length = 265 | Back alignment and structure |
|
| >pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275 | Back alignment and structure |
|
| >pdb|2Q35|A Chain A, Crystal Structure Of The Y82f Variant Of Ech2 Decarboxylase Domain Of Curf From Lyngbya Majuscula Length = 243 | Back alignment and structure |
|
| >pdb|3L3S|A Chain A, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE FAMILY Protein From Silicibacter Pomeroyi Length = 263 | Back alignment and structure |
|
| >pdb|2PG8|A Chain A, Crystal Structure Of R254k Mutanat Of Dpgc With Bound Substrate Analog Length = 417 | Back alignment and structure |
|
| >pdb|2NP9|A Chain A, Crystal Structure Of A Dioxygenase In The Crotonase Superfamily Length = 440 | Back alignment and structure |
|
| >pdb|2Q2X|A Chain A, Crystal Structure Of The Ech2 Decarboxylase Domain Of Curf From Lyngbya Majuscula Length = 243 | Back alignment and structure |
|
| >pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742 | Back alignment and structure |
|
| >pdb|3Q1T|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Avium Length = 278 | Back alignment and structure |
|
| >pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727 | Back alignment and structure |
|
| >pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742 | Back alignment and structure |
|
| >pdb|3RRV|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 276 | Back alignment and structure |
|
| >pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275 | Back alignment and structure |
|
| >pdb|2GTR|A Chain A, Human Chromodomain Y-Like Protein Length = 261 | Back alignment and structure |
|
| >pdb|3NJB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis, Iodide Soak Length = 333 | Back alignment and structure |
|
| >pdb|3GKB|A Chain A, Crystal Structure Of A Putative Enoyl-coa Hydratase From Streptomyces Avermitilis Length = 287 | Back alignment and structure |
|
| >pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715 | Back alignment and structure |
|
| >pdb|3G64|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Streptomyces Coelicolor A3(2) Length = 279 | Back alignment and structure |
|
| >pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363 | Back alignment and structure |
|
| >pdb|2A7K|A Chain A, Carboxymethylproline Synthase (carb) From Pectobacterium Carotovora, Apo Enzyme Length = 250 | Back alignment and structure |
|
| >pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725 | Back alignment and structure |
|
| >pdb|1SG4|A Chain A, Crystal Structure Of Human Mitochondrial Delta3-delta2- Enoyl-coa Isomerase Length = 260 | Back alignment and structure |
|
| >pdb|3H0U|A Chain A, Crystal Structure Of A Putative Enoyl-Coa Hydratase From Streptomyces Avermitilis Length = 289 | Back alignment and structure |
|
| >pdb|1WZ8|A Chain A, Crystal Structure Of Probable Enoyl-Coa Dehydratase From Thermus Thermophilus Hb8 Length = 264 | Back alignment and structure |
|
| >pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From Rhodobacter Sphaeroides 2.4.1 Length = 365 | Back alignment and structure |
|
| >pdb|2J5G|D Chain D, The Native Structure Of A Beta-Diketone Hydrolase From The Cyanobacterium Anabaena Sp. Pcc 7120 Length = 263 | Back alignment and structure |
|
| >pdb|2J5G|A Chain A, The Native Structure Of A Beta-Diketone Hydrolase From The Cyanobacterium Anabaena Sp. Pcc 7120 Length = 263 | Back alignment and structure |
|
| >pdb|3ISA|A Chain A, Crystal Structure Of Putative Enoyl-Coa HydrataseISOMERASE FROM Bordetella Parapertussis Length = 254 | Back alignment and structure |
|
| >pdb|1XX4|A Chain A, Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Coa Length = 261 | Back alignment and structure |
|
| >pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353 | Back alignment and structure |
|
| >pdb|3M6M|A Chain A, Crystal Structure Of Rpff Complexed With Rec Domain Of Rpfc Length = 305 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289 | Back alignment and structure |
|---|
Score = 444 bits (1145), Expect = e-159
Identities = 177/271 (65%), Positives = 211/271 (77%), Gaps = 2/271 (0%)
Query: 62 DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
+ F DI YEK+ +GIAKITINRP RNAFRP TVKE+I+A DAR D ++GVIIL
Sbjct: 20 HDCSEGFEDIRYEKS-TDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIIL 78
Query: 122 TGKGTEAFCSGGDQALRTRDGYA-DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGG 180
TG G +AFCSGGDQ +R G D LNVLD Q QIR PKPV+AMVAGY++GGG
Sbjct: 79 TGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGG 138
Query: 181 HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEE 240
HVLHM+CDLTIAADNAIFGQTGPKVGSFD G+G+S M+R+VG KKARE+WFL R Y A++
Sbjct: 139 HVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQ 198
Query: 241 AEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDAT 300
A MGLVNTVVPL LE+ET++W RE+L+NSP A+R LK+ALNA DG AGLQ L G+AT
Sbjct: 199 ALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQELAGNAT 258
Query: 301 LIFYGTEEGSEGKTAFVERRRPDFLKFPRRP 331
++FY TEEG EG+ AF ++R+PDF KF R P
Sbjct: 259 MLFYMTEEGQEGRNAFNQKRQPDFSKFKRNP 289
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275 | Back alignment and structure |
|---|
Score = 443 bits (1141), Expect = e-158
Identities = 173/274 (63%), Positives = 214/274 (78%), Gaps = 7/274 (2%)
Query: 63 ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
+ DI+Y KA GIAKI INRP +RNAFRP TV EL AF +AR+D+ +GV++LT
Sbjct: 4 HIAKHYDDILYYKA--GGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLT 61
Query: 123 GKGTE-----AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177
G G AFCSGGDQ++R GY D + RLNVLDLQ IR +PK VIA+VAGYA+
Sbjct: 62 GAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAI 121
Query: 178 GGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT 237
GGGHVLH+VCDLTIAADNAIFGQTGPKVGSFD G+GSS ++R+VG KKARE+W+L R Y+
Sbjct: 122 GGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYS 181
Query: 238 AEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGG 297
A+EAE+MG+VNTVVP+++LE+E I+W++EIL SP AIR LK+A NA DG AGLQ L G
Sbjct: 182 AQEAERMGMVNTVVPVDRLEEEGIQWAKEILSKSPLAIRCLKAAFNADCDGQAGLQELAG 241
Query: 298 DATLIFYGTEEGSEGKTAFVERRRPDFLKFPRRP 331
+ATL++Y TEEGSEGK AF+E+R PDF ++P P
Sbjct: 242 NATLLYYMTEEGSEGKQAFLEKRPPDFSQYPWLP 275
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273 | Back alignment and structure |
|---|
Score = 442 bits (1139), Expect = e-158
Identities = 173/269 (64%), Positives = 212/269 (78%), Gaps = 2/269 (0%)
Query: 63 ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
E+ E+ +I YE EGIAK+TINRP+ RNAF P TV E+I AF+ ARDD +V VI+LT
Sbjct: 7 ETLREYDEIKYEFY--EGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLT 64
Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
G+G AFCSGGDQ R GY + RLNVLDLQ IR +PKPVIAMV GYAVGGG+V
Sbjct: 65 GEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNV 124
Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
L++VCDLTIAADNAIFGQTGPKVGSFDAGYGS ++R+VG KKARE+W+L R Y A+EA
Sbjct: 125 LNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEAL 184
Query: 243 KMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLI 302
MGLVNTVVPLEK+E ET++W +EI+++SPTA+R LK+A+NA DG AGLQ + GDATL+
Sbjct: 185 DMGLVNTVVPLEKVEDETVQWCKEIMKHSPTALRFLKAAMNADTDGLAGLQQMAGDATLL 244
Query: 303 FYGTEEGSEGKTAFVERRRPDFLKFPRRP 331
+Y T+E EG+ AF E+R PDF +FP+ P
Sbjct: 245 YYTTDEAKEGRDAFKEKRDPDFDQFPKFP 273
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334 | Back alignment and structure |
|---|
Score = 410 bits (1055), Expect = e-144
Identities = 140/330 (42%), Positives = 190/330 (57%), Gaps = 23/330 (6%)
Query: 17 NHLVPVISSDSNSGFIGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKA 76
+H ++ S+ + A + P WR+ + + TDI Y +
Sbjct: 9 HHSSGLVPRGSHM----VAPAGEQGRSSTALSDNPFDAKAWRLV--DGFDDLTDITYHRH 62
Query: 77 VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG------TEAFC 130
V + ++ NRP+ RNAFRPHTV EL R + AR VGV++LTG G AFC
Sbjct: 63 VDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFC 122
Query: 131 SGGDQALRTRDGY----------ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGG 180
SGGDQ +R R GY D GRL++L++Q IR +PK VI +V G+A GGG
Sbjct: 123 SGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGG 182
Query: 181 HVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE 239
H LH+VCDLT+A+ + A F QT VGSFD GYGS+ ++R VG K ARE++FL R YTAE
Sbjct: 183 HSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAE 242
Query: 240 EAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDA 299
+ +MG VN V +LE ++W+ EI SP A R+LK A N +DDG G Q G+A
Sbjct: 243 QMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQRMLKFAFNLLDDGLVGQQLFAGEA 302
Query: 300 TLIFYGTEEGSEGKTAFVERRRPDFLKFPR 329
T + Y T+E EG+ AF+++R PD+ FPR
Sbjct: 303 TRLAYMTDEAVEGRDAFLQKRPPDWSPFPR 332
|
| >3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279 | Back alignment and structure |
|---|
Score = 337 bits (866), Expect = e-116
Identities = 86/277 (31%), Positives = 128/277 (46%), Gaps = 15/277 (5%)
Query: 57 WRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSV 116
WR I Y+ + + IA IT+NRP+ NA P + EL A+ A +D+ V
Sbjct: 8 WRRPSRPEQRTEMYIDYDVS--DRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDV 65
Query: 117 GVIILTGKGTEAFCSGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172
VI+L G + F +G D + + L+ ++ R +PKP IA V
Sbjct: 66 SVIVLRANG-KHFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAV 124
Query: 173 AGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFL 232
G + GG +L CDL IAA++A+F P V G + +GP+KA+E+ F
Sbjct: 125 QGRCISGGLLLCWPCDLIIAAEDALFSD--PVVLMDIGGVEYHGHTWELGPRKAKEILFT 182
Query: 233 ARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG---H 289
R TAEE + G+VN VVP ++L+ ET + EI + P A+R K A+N D +
Sbjct: 183 GRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIAKMPPFALRQAKRAVNQTLDVQGFY 242
Query: 290 AGLQTLGGDATLIFYGTEEGSEGKTAFV--ERRRPDF 324
A +Q D +G G V E + +
Sbjct: 243 AAIQ-SVFDIHQTGHGNAMSVSGWPVLVDIEEMKANI 278
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276 | Back alignment and structure |
|---|
Score = 325 bits (836), Expect = e-112
Identities = 74/273 (27%), Positives = 116/273 (42%), Gaps = 13/273 (4%)
Query: 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
+ + E +GIA + +NRP++RNA P +E+I D + GV++LTG G
Sbjct: 7 RWKTVKVEIE--DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG- 63
Query: 127 EAFCSGGDQA----LRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
EA+ +G D E R +R KP IAMV G+ GGG
Sbjct: 64 EAWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFS 123
Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
+ CDL I AD A FG + G S M+ VG +++ + + ++A
Sbjct: 124 PLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAA 183
Query: 243 KMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVD--DGHAGLQTLGG--D 298
+MGLVN VPL +L + TI+ +R +L +P +R K L D
Sbjct: 184 EMGLVNESVPLAQLREVTIELARNLLEKNPVVLRAAKHGFKRCRELTWEQNEDYLYAKLD 243
Query: 299 ATLIFYGTEEGSEGKTAFVERR--RPDFLKFPR 329
+ + +G F++ + +P + R
Sbjct: 244 QSRLLDTEGGREQGMKQFLDDKSIKPGLQAYKR 276
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333 | Back alignment and structure |
|---|
Score = 250 bits (640), Expect = 1e-81
Identities = 65/307 (21%), Positives = 102/307 (33%), Gaps = 45/307 (14%)
Query: 64 SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
+ YE + +A+IT NRP++ NA T EL A D V VI+++G
Sbjct: 30 DFDNLKTMTYEVT--DRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSG 87
Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRLN-----------------------------V 154
+G E FC+G D + +
Sbjct: 88 RG-EGFCAGFDLSAYAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRF 146
Query: 155 LDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGS 214
+ + KP + + GY V GG + + D IAA +A G +V +
Sbjct: 147 VRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGV---PAA 203
Query: 215 SIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTA 274
+ + +G ++A+ + F T +A + GL L+ T + I
Sbjct: 204 GLWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAAMPVNQ 263
Query: 275 IRVLKSALNAV--DDGHAGLQTLGGDATLIFYGTEEG--------SEGKTAFVERRRPDF 324
+ + K A N + G A Q + I T EG G V RR
Sbjct: 264 LIMAKLACNTALLNQGVATSQMVSTVFDGIARHTPEGHAFVATAREHGFREAVRRRDEPM 323
Query: 325 LKFPRRP 331
RR
Sbjct: 324 GDHGRRA 330
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268 | Back alignment and structure |
|---|
Score = 244 bits (625), Expect = 3e-80
Identities = 76/262 (29%), Positives = 129/262 (49%), Gaps = 8/262 (3%)
Query: 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
+D++YE + + +T+NR + NAF + E+ + A +D++V VI+L G
Sbjct: 2 SLSDLLYEIQ--DKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANG- 58
Query: 127 EAFCSGGD-QALRTRDGYADYENFGRLNVL-DLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
+ F +G D +++ + + EN VL +L I + PKP IAMV G A GGG L
Sbjct: 59 KHFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLA 118
Query: 185 MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKM 244
CD+ IA+ +A F + K+G A S + R +G + A+ ++ A + A A +
Sbjct: 119 AACDIAIASTSARFCFSEVKLGLIPAV-ISPYVVRAIGERAAKMLFMSAEVFDATRAYSL 177
Query: 245 GLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG--HAGLQTLGGDATLI 302
LV VP + L + T+K++ +I N+P A++ K V + L
Sbjct: 178 NLVQHCVPDDTLLEFTLKYASQISNNAPEAVKNSKQLAQYVANKKIDEELVRYTASLIAH 237
Query: 303 FYGTEEGSEGKTAFVERRRPDF 324
++EG EG AF+ + P++
Sbjct: 238 KRVSDEGQEGLKAFLNKEIPNW 259
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253 | Back alignment and structure |
|---|
Score = 235 bits (601), Expect = 7e-77
Identities = 81/258 (31%), Positives = 128/258 (49%), Gaps = 9/258 (3%)
Query: 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
++ + +A + +N P+RRN P L++A +D D V ++LTG+G +AF
Sbjct: 1 MVQVEK--GHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRG-KAFS 57
Query: 131 SGGD-QALRTRDGYADYENFG-RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCD 188
+G D L EN+ L+++ L ++ PKP +A V G AV GG L + CD
Sbjct: 58 AGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACD 117
Query: 189 LTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVN 248
L + + A G T K+G A S I+ R VG K A+++ R A EA+ +GLVN
Sbjct: 118 LVVMDEEARLGYTEVKIGFVAAL-VSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVN 176
Query: 249 TVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH--AGLQTLGGDATLIFYGT 306
+ P K +E + E+ +N+PT++R+ K L A+ G + + T
Sbjct: 177 RIAPPGKALEEAKALAEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAALANAWVR-ET 235
Query: 307 EEGSEGKTAFVERRRPDF 324
+ +EG AF E+R P F
Sbjct: 236 GDLAEGIRAFFEKRPPRF 253
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286 | Back alignment and structure |
|---|
Score = 235 bits (603), Expect = 8e-77
Identities = 80/266 (30%), Positives = 124/266 (46%), Gaps = 9/266 (3%)
Query: 63 ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
G+ ++ + G+ +T+NRP NA + L AF +D SV ++L
Sbjct: 18 GPGSMSEPLLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLA 77
Query: 123 GKGTEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
G +AFC+G D + +R YE D+ + I+RLP PVIA V G A G
Sbjct: 78 ASG-KAFCAGHDLKEMRAEPSREYYEKLFAR-CTDVMLAIQRLPAPVIARVHGIATAAGC 135
Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEA 241
L +CDL +A +A F +G VG F +SR VG K A EM F +A++A
Sbjct: 136 QLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVGRKAAFEMLVTGEFVSADDA 194
Query: 242 EKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATL 301
+ +GLVN VV + L+ E +I+ A+ + K+ + +++ DA
Sbjct: 195 KGLGLVNRVVAPKALDDEIEAMVSKIVAKPRAAVAMGKALFYRQIE--TDIESAYADAGT 252
Query: 302 IFY---GTEEGSEGKTAFVERRRPDF 324
EG +AF+E+RRP++
Sbjct: 253 TMACNMMDPSALEGVSAFLEKRRPEW 278
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290 | Back alignment and structure |
|---|
Score = 234 bits (600), Expect = 3e-76
Identities = 68/273 (24%), Positives = 121/273 (44%), Gaps = 14/273 (5%)
Query: 63 ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
+ + ++ ++ IA +T+NRP+R NA + + D D+ V +++T
Sbjct: 17 QGPGSMSFVLVDR-PRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVIT 75
Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQV------QIRRLPKPVIAMVAGYA 176
G G FCSG DQ + + + +++ +RR+ +PVIA + G A
Sbjct: 76 GAGK-GFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAA 134
Query: 177 VGGGHVLHMVCDLTIAADNAIFGQTGPKVG--SFDAGYGSSIMSRLVGPKKAREMWFLAR 234
+GGG L + CD+ +A+ +A F G G + + G S ++ R +G +A ++ R
Sbjct: 135 IGGGLCLALACDVRVASQDAYFRAAGINNGLTASELG-LSYLLPRAIGTSRASDIMLTGR 193
Query: 235 FYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNA---VDDGHAG 291
A+EAE++GLV+ V E L +E I S I + K + + +
Sbjct: 194 DVDADEAERIGLVSRKVASESLLEECYAIGERIAGFSRPGIELTKRTIWSGLDAASLESH 253
Query: 292 LQTLGGDATLIFYGTEEGSEGKTAFVERRRPDF 324
+ G + T+ E A E+R +F
Sbjct: 254 MHQEGLGQLYVRLLTDNFEEATAARKEKRPAEF 286
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 5e-75
Identities = 47/260 (18%), Positives = 81/260 (31%), Gaps = 16/260 (6%)
Query: 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
+ + E+ T++RP++RNA V+ LI + A + V +++ G G
Sbjct: 4 SASLPLAIERR--PAAWTFTLSRPEKRNALSAELVEALIDGVDAAHREQ-VPLLVFAGAG 60
Query: 126 TEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
F +G D T+ R+ L ++ P +A+ G G G L
Sbjct: 61 -RNFSAGFDFTDYETQSEGDLLLRMVRIE--MLLQRVAGSPSLTLALAHGRNFGAGVDLF 117
Query: 185 MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKM 244
C A F G K G G+ +VG +A + AR + A+EA ++
Sbjct: 118 AACKWRYCTPEAGFRMPGLKFGLV---LGTRRFRDIVGADQALSILGSARAFDADEARRI 174
Query: 245 GLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFY 304
G V + + P L L A
Sbjct: 175 GFVRDCAAQAQWPALIDAAAEAATALDPATRATLHRVLR------DDHDDADLAALARSA 228
Query: 305 GTEEGSEGKTAFVERRRPDF 324
++ + +
Sbjct: 229 AQPGFKARIRDYLAQPAAEG 248
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272 | Back alignment and structure |
|---|
Score = 230 bits (590), Expect = 7e-75
Identities = 60/261 (22%), Positives = 111/261 (42%), Gaps = 6/261 (2%)
Query: 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
+F + +E G+ + ++ P N+ P ++L + D V V+++ G+G
Sbjct: 10 QDFPSLRFEPGEH-GVLNLVLDSPGL-NSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEG 67
Query: 126 TEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
AF SGG + + G + DL + + L KPV++ + G AVG G V+
Sbjct: 68 K-AFSSGGSFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVA 126
Query: 185 MVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEK 243
++ D+++A+ A K+G + LVG KA+ + EEAE+
Sbjct: 127 LLADISVASATAKIIDGHTKLGVAAGDH-AAICWPLLVGMAKAKYYLLTCETLSGEEAER 185
Query: 244 MGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIF 303
+GLV+T V +++ + + + + + AIR K +LN +
Sbjct: 186 IGLVSTCVDDDEVLPTATRLAENLAQGAQNAIRWTKRSLNHWYRMFGPTFETSLGLEFLG 245
Query: 304 YGTEEGSEGKTAFVERRRPDF 324
+ + EG A ++R F
Sbjct: 246 FTGPDVQEGLAAHRQKRPARF 266
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265 | Back alignment and structure |
|---|
Score = 230 bits (588), Expect = 1e-74
Identities = 78/267 (29%), Positives = 134/267 (50%), Gaps = 17/267 (6%)
Query: 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
+ +I + A + KI++NR + N+ ++EL ++++ V+ILTG G
Sbjct: 5 LQLQNISVDYA-TPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAG 63
Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
+AFC+G D R + + + +LP+PVIA + G A+GGG L +
Sbjct: 64 EKAFCAGADLKERAGMNEEQVRHAVS-MIRTTMEMVEQLPQPVIAAINGIALGGGTELSL 122
Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEAEKM 244
CD IAA++A G T + G G + + RL+G +A+E+ + R +A+EA++
Sbjct: 123 ACDFRIAAESASLGLTETTLAII-PGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEY 181
Query: 245 GLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLI-- 302
GLV VVP+ LE++ I+ + +I N P A+R+ K A++ G+Q +
Sbjct: 182 GLVEFVVPVHLLEEKAIEIAEKIASNGPIAVRLAKEAIS------NGIQVDLHTGLQMEK 235
Query: 303 --FY---GTEEGSEGKTAFVERRRPDF 324
+ T++ EG AF E+R P +
Sbjct: 236 QAYEGVIHTKDRLEGLQAFKEKRTPMY 262
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250 | Back alignment and structure |
|---|
Score = 228 bits (583), Expect = 3e-74
Identities = 54/263 (20%), Positives = 94/263 (35%), Gaps = 28/263 (10%)
Query: 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
+ E + + + IT++ P++ N F + A A D SV +++ G +F
Sbjct: 2 VFEENS--DEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFS 59
Query: 131 SGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDL 189
+GGD ++ D E + V+DL + + KP IA V GYA+G G ++ D
Sbjct: 60 AGGDFNEVKQLSRSEDIEEWID-RVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQ 118
Query: 190 TIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNT 249
+ A A F K G G++I+ G +E+ + + A LVN
Sbjct: 119 RLMASTANFVMPELKHGIG-CSVGAAILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQ 177
Query: 250 VVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATL-------- 301
VV L I + + +A K A+N L
Sbjct: 178 VVESSALLDAAITQAHVMASYPASAFINTKRAVNK-----------PFIHLLEQTRDASK 226
Query: 302 -IFY---GTEEGSEGKTAFVERR 320
+ + + ++
Sbjct: 227 AVHKAAFQARDAQGHFKNVLGKK 249
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257 | Back alignment and structure |
|---|
Score = 228 bits (584), Expect = 3e-74
Identities = 83/260 (31%), Positives = 122/260 (46%), Gaps = 10/260 (3%)
Query: 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
+ I YE +A +T+NRPD+ NAF E+ +A A D +V +++TG G
Sbjct: 2 YETIRYEVK--GQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAG-R 58
Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
AFC+G D L D+ + R + + L KPV+A V G A G G L + C
Sbjct: 59 AFCAGED--LSGVTEEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALAC 116
Query: 188 DLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
D + ++ A F VG DAG + RLVG KA E+ L TAEEA +GL
Sbjct: 117 DFRLLSEKASFAPAFIHVGLVPDAG-HLYYLPRLVGRAKALELAVLGEKVTAEEAAALGL 175
Query: 247 VNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG--HAGLQTLGGDATLIFY 304
V+PL E+E +++ + AI ++K L ++ L+ + I
Sbjct: 176 ATKVIPLSDWEEEVKQFAERLSAMPTKAIGLIKRLLRESEETTFDRYLE-REAECQRIAG 234
Query: 305 GTEEGSEGKTAFVERRRPDF 324
T + EG AF E+R+P F
Sbjct: 235 LTSDHREGVKAFFEKRKPLF 254
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269 | Back alignment and structure |
|---|
Score = 228 bits (583), Expect = 5e-74
Identities = 70/277 (25%), Positives = 117/277 (42%), Gaps = 24/277 (8%)
Query: 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
+ I + +G+A+ITI P RNA ++E+ A N A +D SVG +++TG +
Sbjct: 2 YEAIGHRVE--DGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAE-D 58
Query: 128 AFCSGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
AFC+G + G D+ L + +I R+ +PV+A + G A GGG +
Sbjct: 59 AFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGI 118
Query: 184 HMVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
+ D+ I AD+A F +G D S ++R+VG ++A E+ R EEA+
Sbjct: 119 SLASDMAICADSAKFVCAWHTIGIGNDTA-TSYSLARIVGMRRAMELMLTNRTLYPEEAK 177
Query: 243 KMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNA-----VDDGH---AGLQT 294
GLV+ V P ++ + K +RE+ + K +A V++
Sbjct: 178 DWGLVSRVYPKDEFREVAWKVARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEIQNVI 237
Query: 295 LGGDATLIFYGTEEGSEGKTAFVERRRPDFLKFPRRP 331
T F++ R D +
Sbjct: 238 ASV-------THPHFMPCLTRFLDGHRADRPQVELPA 267
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263 | Back alignment and structure |
|---|
Score = 227 bits (582), Expect = 8e-74
Identities = 56/265 (21%), Positives = 104/265 (39%), Gaps = 11/265 (4%)
Query: 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
+ + E IT++ P+++N L+ A +++S+ IIL K
Sbjct: 2 SLSYVHTEIQ--NDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHR 59
Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQ---VQIRRLPKPVIAMVAGYAVGGGHVL 183
F SG + R + L ++I PK +A++ GYA GGG +
Sbjct: 60 AYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNM 119
Query: 184 HMVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
+ CD IA A F + K+G D G S + R++G ++ + + +T+EEA
Sbjct: 120 MLACDRRIALRRAKFLENFHKMGISPDLG-ASYFLPRIIGYEQTMNLLLEGKLFTSEEAL 178
Query: 243 KMGLVNTVVPL-EKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG--HAGLQTLGGDA 299
++GL+ + ++L++ + + + AI K L L+ +
Sbjct: 179 RLGLIQEICENKQELQERVKNYLKAVSEGYVPAIAATKKLLKGKAAEELKQQLE-QETEE 237
Query: 300 TLIFYGTEEGSEGKTAFVERRRPDF 324
+ + E + A VE
Sbjct: 238 LVALFKQTEIKKRLEALVEGHHHHH 262
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267 | Back alignment and structure |
|---|
Score = 227 bits (582), Expect = 8e-74
Identities = 72/268 (26%), Positives = 111/268 (41%), Gaps = 12/268 (4%)
Query: 63 ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
S T+ + E+ + ITINRP+ RNA + A +A+ D V ++LT
Sbjct: 3 GSMTDAPGALAERR--GNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLT 60
Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
G G ++FC+G D R + + + KP IA V G A+GGG
Sbjct: 61 GAGDKSFCAGADLKAIARRENLYHPDHPEWGFAGYV--RHFIDKPTIAAVNGTALGGGTE 118
Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEA 241
L + DL +A + A FG K G A G ++ + K A + +A A
Sbjct: 119 LALASDLVVADERAQFGLPEVKRGLI-AAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAA 177
Query: 242 EKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-----HAGLQTLG 296
GL+N VV + + + I N+P +++ K VDDG G
Sbjct: 178 RDWGLINEVVEAGSVLDAALALASAITVNAPLSVQASKRIAYGVDDGVVVGDEPGWDRTM 237
Query: 297 GDATLIFYGTEEGSEGKTAFVERRRPDF 324
+ + +E+ EG AF E+R P +
Sbjct: 238 REMRALL-KSEDAKEGPRAFAEKREPVW 264
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 227 bits (581), Expect = 1e-73
Identities = 63/266 (23%), Positives = 110/266 (41%), Gaps = 8/266 (3%)
Query: 62 DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
S +++ + + + I +NRP +RNAF ++EL A + D+ + +L
Sbjct: 2 PGSMSDYETLRIRRD--GYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVL 59
Query: 122 TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
G+G F +G D A + + QV R+L KP++ V G + G
Sbjct: 60 YGEG-PLFTAGLDLASVAAEIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGI 118
Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEE 240
L + D+ IA + A F Q G + G++I R G A A + A E
Sbjct: 119 ELALAADIVIADETATFAQLEVNRGIY-PFGGATIRFPRTAGWGNAMRWMLTADTFDAVE 177
Query: 241 AEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH--AGLQTLGGD 298
A ++G+V +VP+ + I ++ I R +P ++ A + L
Sbjct: 178 AHRIGIVQEIVPVGEHVDTAIAIAQTIARQAPLGVQATLRNARLAVREGDAAAEEQLVPT 237
Query: 299 ATLIFYGTEEGSEGKTAFVERRRPDF 324
+F +E+ + G AF+ R +F
Sbjct: 238 VRELF-TSEDATLGVQAFLSRTTAEF 262
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256 | Back alignment and structure |
|---|
Score = 225 bits (577), Expect = 3e-73
Identities = 68/267 (25%), Positives = 115/267 (43%), Gaps = 21/267 (7%)
Query: 64 SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
S + ++ + + + +T+NRP RNA RA +DA++D V V+I+TG
Sbjct: 4 SMADSPVLLVDTT--DRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTG 61
Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
FC+G D D+ + + KPVI + G AV GG L
Sbjct: 62 AD-PVFCAGLDLKELGDTTELP----------DISPKWPDMTKPVIGAINGAAVTGGLEL 110
Query: 184 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEAE 242
+ CD+ IA++NA F T +VG +G S+ + + VG AR M + +A++A
Sbjct: 111 ALYCDILIASENAKFADTHARVGLM-PTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDAL 169
Query: 243 KMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH--AGLQ---TLGG 297
+ GLV VV + L + + I+ N+ A+R L + + +D L
Sbjct: 170 RAGLVTEVVAHDDLLTAARRVAASIVGNNQKAVRALLDSYHRIDALQTGGALWAEAEAAR 229
Query: 298 DATLIFYGTEEGSEGKTAFVERRRPDF 324
++ + + + +ER R
Sbjct: 230 QWMRST-SGDDIAASRASVIERGRSQV 255
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267 | Back alignment and structure |
|---|
Score = 225 bits (577), Expect = 4e-73
Identities = 52/262 (19%), Positives = 99/262 (37%), Gaps = 8/262 (3%)
Query: 64 SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
S + I + IT +RP+ N ++E ++ N + V V++L G
Sbjct: 2 SLVTYQTIKVRFQ--ASVCYITFHRPEANNTINDTLIEECLQVLNQCETST-VTVVVLEG 58
Query: 124 KGTEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
E FC G D Q + + + + DL ++++ P I+ V G GG
Sbjct: 59 LP-EVFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLG 117
Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
D+ IA A F + G + A + R +G +KA M + + + +EA
Sbjct: 118 FVSATDIAIADQTASFSLSELLFGLYPAC-VLPFLIRRIGRQKAHYMTLMTKPISVQEAS 176
Query: 243 KMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLI 302
+ GL++ + K + R + I K ++++D + + A
Sbjct: 177 EWGLIDAFDAESDVLLR--KHLLRLRRLNKKGIAHYKQFMSSLDHQVSRAKATALTANQD 234
Query: 303 FYGTEEGSEGKTAFVERRRPDF 324
+ + G +VE + +
Sbjct: 235 MFSDPQNQMGIIRYVETGQFPW 256
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256 | Back alignment and structure |
|---|
Score = 223 bits (572), Expect = 2e-72
Identities = 60/264 (22%), Positives = 100/264 (37%), Gaps = 20/264 (7%)
Query: 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
+ + + +T+NRP+ NAF +A DA DD V V++LTG G
Sbjct: 4 SMVTLQIDDD--NRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSG- 60
Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
F +G D A + G+ L + PKP+I V G VG G +
Sbjct: 61 RGFSAGTDLAEMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGY 120
Query: 187 CDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMG 245
DL + A +G +A S ++ +LVG + A + + + AEEA +MG
Sbjct: 121 ADLAFMSSTARLKCPFTSLGVAPEAA-SSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMG 179
Query: 246 LVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNA-----VDDGH---AGLQTLGG 297
LV + E+L E + + + +++ +K + +
Sbjct: 180 LVWRICSPEELLPEARRHAEILAAKPISSLMAVKHTMVEPNRAQIAAASARENAHFAELM 239
Query: 298 DATLIFYGTEEGSEGKTAFVERRR 321
G + + F +RRR
Sbjct: 240 -------GAQANAAALADFTDRRR 256
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 3e-72
Identities = 78/297 (26%), Positives = 125/297 (42%), Gaps = 29/297 (9%)
Query: 44 HRIHGEVPSHDVVWR------IACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRP 97
H H D+ + +E + +GI I ++ P +RN
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMGAGRRESEPRPTSARQL--DGIRNIVLSNPKKRNTLSL 59
Query: 98 HTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY--ENFGRLNVL 155
+K L D + + VII++ +G F SG D T + DY E F +
Sbjct: 60 AMLKSLQSDILHDADSNDLKVIIISAEG-PVFSSGHDLKELTEEQGRDYHAEVFQTCS-- 116
Query: 156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSS 215
+ + IR P PVIAMV G A G L CD+ +A+D + F G VG F
Sbjct: 117 KVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLF-CSTPGV 175
Query: 216 IMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAI 275
++R V K A EM F +A+EA GL++ VVP +L++ET++ +R+I S +
Sbjct: 176 ALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVV 235
Query: 276 RVLKSALNA-----VDDGHAGLQTLGGDATLIFY---GTEEGSEGKTAFVERRRPDF 324
+ K+ + + + +G EG TAF+++R+P +
Sbjct: 236 SLGKATFYKQLPQDLGTAYY-------LTSQAMVDNLALRDGQEGITAFLQKRKPVW 285
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 4e-72
Identities = 64/268 (23%), Positives = 104/268 (38%), Gaps = 20/268 (7%)
Query: 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
+ + + G+ +IT R ++ NA P + L R + D V ++L G+G
Sbjct: 7 ARYPGLAFAWP-RPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEG 64
Query: 126 TEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
F +GG + + DL + P+PV+A V AVG G L
Sbjct: 65 -GVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALA 123
Query: 185 MVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEK 243
+ D+ + ++G + LVG KA+ L T EEAE+
Sbjct: 124 LAADIAVVGKGTRLLDGHLRLGVAAGDH-AVLLWPLLVGMAKAKYHLLLNEPLTGEEAER 182
Query: 244 MGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-------HAGLQTLG 296
+GLV V EK+ ++ ++ + + + A+ K ALN L+ LG
Sbjct: 183 LGLVALAVEDEKVYEKALEVAERLAQGPKEALHHTKHALNHWYRSFLPHFELSLALEFLG 242
Query: 297 GDATLIFYGTEEGSEGKTAFVERRRPDF 324
+E EG A E+R P+F
Sbjct: 243 F-------SGKELEEGLKALKEKRPPEF 263
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279 | Back alignment and structure |
|---|
Score = 224 bits (572), Expect = 4e-72
Identities = 69/267 (25%), Positives = 114/267 (42%), Gaps = 16/267 (5%)
Query: 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
E+ + E +G+A +T+ RPD+ NA +L + +V ++L G+G
Sbjct: 15 EWRHLRVEIT--DGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEG- 71
Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVL-----DLQVQIRRLPKPVIAMVAGYAVGGGH 181
FCSGGD + G + RL + +R P PVIA + G A G G
Sbjct: 72 RGFCSGGD--VDEIIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGA 129
Query: 182 VLHMVCDLTIAADNAIFGQTGPKVG--SFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE 239
VL + D +A + F +VG D G + ++ R+VG A + L A
Sbjct: 130 VLALAADFRVADPSTRFAFLFTRVGLSGGDMG-AAYLLPRVVGLGHATRLLMLGDTVRAP 188
Query: 240 EAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG--HAGLQTLGG 297
EAE++GL++ + + ++ +R + A K+ L A D A ++ L
Sbjct: 189 EAERIGLISELTEEGRADEAARTLARRLADGPALAHAQTKALLTAELDMPLAAAVE-LDA 247
Query: 298 DATLIFYGTEEGSEGKTAFVERRRPDF 324
+ E+ +E AF E+R P +
Sbjct: 248 STQALLMTGEDYAEFHAAFTEKRPPKW 274
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255 | Back alignment and structure |
|---|
Score = 222 bits (568), Expect = 6e-72
Identities = 81/266 (30%), Positives = 112/266 (42%), Gaps = 27/266 (10%)
Query: 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
I E + +I ++RP++ NA ++EL DA D SV ++LTG G
Sbjct: 5 MNGISVEHD--GAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAG-R 61
Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVC 187
AFCSGGD G AD N + I LPKPVIA V G AVG G L + C
Sbjct: 62 AFCSGGDLTGGDTAGAADAAN-------RVVRAITSLPKPVIAGVHGAAVGFGCSLALAC 114
Query: 188 DLTIAADNAIFGQTGPKVG-SFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
DL +AA + F +VG D G S+++ L+G + M A +A A + G+
Sbjct: 115 DLVVAAPASYFQLAFTRVGLMPDGG-ASALLPLLIGRARTSRMAMTAEKISAATAFEWGM 173
Query: 247 VNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH--------AGLQTLGGD 298
++ + ++ E R + A K AL A A Q
Sbjct: 174 ISHITSADEYESVLTDVLRSVSGGPTLAFGWTKRALAAATLAELEPVQAIEAEGQLALV- 232
Query: 299 ATLIFYGTEEGSEGKTAFVERRRPDF 324
T + EG AF ERR P+F
Sbjct: 233 ------ETADFREGARAFRERRTPNF 252
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258 | Back alignment and structure |
|---|
Score = 222 bits (567), Expect = 1e-71
Identities = 80/266 (30%), Positives = 129/266 (48%), Gaps = 19/266 (7%)
Query: 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
+EF I + + I + RPD NA V E++ A + V VI+LTG+G
Sbjct: 2 SEFVSIAARQE--GAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRG 59
Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
AF +G D +D E + D ++ + P+IA V G A+GGG L +
Sbjct: 60 -RAFAAGADIQEMAKDDPIRLEWLNQFADWD---RLSIVKTPMIAAVNGLALGGGFELAL 115
Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMG 245
CDL +A+ A FG +G G+ +++L+GPK+A E + +A+EAE++G
Sbjct: 116 SCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLG 175
Query: 246 LVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLI--- 302
+VN VV E L +ET++ + + P A+R++K A+ + +
Sbjct: 176 IVNRVVSPELLMEETMRLAGRLAEQPPLALRLIKEAVQ------KAVDYPLYEGMQFERK 229
Query: 303 -FY---GTEEGSEGKTAFVERRRPDF 324
FY +E+ EG AF+E+R+P F
Sbjct: 230 NFYLLFASEDQKEGMAAFLEKRKPRF 255
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264 | Back alignment and structure |
|---|
Score = 222 bits (567), Expect = 1e-71
Identities = 83/264 (31%), Positives = 119/264 (45%), Gaps = 17/264 (6%)
Query: 62 DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
++ + I +A E + I + RP+RRNA V+EL +A A D S I+L
Sbjct: 14 AQTQGPGSMIGITQA--EAVLTIELQRPERRNALNSQLVEELTQAIRKAGDGS-ARAIVL 70
Query: 122 TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
TG+GT AFC+G D L ADY + +L + P PV+ + G A+G G
Sbjct: 71 TGQGT-AFCAGAD--LSGDAFAADYPDRLI----ELHKAMDASPMPVVGAINGPAIGAGL 123
Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEE 240
L M CDL + A +A F K G D +S LVG +AR M A TAE
Sbjct: 124 QLAMQCDLRVVAPDAFFQFPTSKYGLALDNW-SIRRLSSLVGHGRARAMLLSAEKLTAEI 182
Query: 241 AEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDAT 300
A G+ N + L + W+ EI R +P AI+ K LN +
Sbjct: 183 ALHTGMANRIGTLA----DAQAWAAEIARLAPLAIQHAKRVLNDDGAIEEAWP-AHKELF 237
Query: 301 LIFYGTEEGSEGKTAFVERRRPDF 324
+G+++ E + A +E+R P F
Sbjct: 238 DKAWGSQDVIEAQVARMEKRPPKF 261
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261 | Back alignment and structure |
|---|
Score = 221 bits (566), Expect = 2e-71
Identities = 57/266 (21%), Positives = 104/266 (39%), Gaps = 15/266 (5%)
Query: 67 EFTDIIYEKAVGEGIAKI-TINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
+ DI+ K +G I + N+ P ++E+ A + A D +++L+ G
Sbjct: 3 RYRDIVVRKQ--DGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVG 59
Query: 126 TEAFCSGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
FC G D T D + + + + KP+I V G A+G G
Sbjct: 60 -SVFCCGLDFIYFIRRLTDDRKRESTKMAEA-IRNFVNTFIQFKKPIIVAVNGPAIGLGA 117
Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEE 240
+ +CD+ A + A F G D + + +++G A EM R TA+E
Sbjct: 118 SILPLCDVVWANEKAWFQTPYTTFGQSPDGC-STVMFPKIMGGASANEMLLSGRKLTAQE 176
Query: 241 AEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG--HAGLQTLGGD 298
A GLV+ V QE + +E+ +P + K+ + +
Sbjct: 177 ACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEV 236
Query: 299 ATLIFYGTEEGSEGKTAFVERRRPDF 324
I+ G+ +G + +++R+ +F
Sbjct: 237 LKKIW-GSAQGMDSMLKYLQRKIDEF 261
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275 | Back alignment and structure |
|---|
Score = 221 bits (566), Expect = 3e-71
Identities = 51/262 (19%), Positives = 101/262 (38%), Gaps = 11/262 (4%)
Query: 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
+ + ++ + + I +NRP +RNA + L D + +++ G G
Sbjct: 13 ADPSTLVVDTV--GPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIG 68
Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
+ F +G D + + + + +I+ PVIA + G +GGG L
Sbjct: 69 -DHFSAGLDLSELRERDATEGLVHSQT-WHRVFDKIQYCRVPVIAALKGAVIGGGLELAC 126
Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEAEKM 244
+ +A +A + G F G G S+ + RL+G + +M R Y+A E
Sbjct: 127 AAHIRVAEASAYYALPEGSRGIF-VGGGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVH 185
Query: 245 GLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH--AGLQTLGGDATLI 302
G ++ + ++ + +N+P + AL + + + GL AT+
Sbjct: 186 GFSQYLIENGSAYDKALELGNRVAQNAPLTNFAVLQALPMIAEANPQTGLLMESLMATVA 245
Query: 303 FYGTEEGSEGKTAFVERRRPDF 324
+E AF++ +
Sbjct: 246 Q-SDQEAKTRIRAFLDHKTAKV 266
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266 | Back alignment and structure |
|---|
Score = 220 bits (564), Expect = 4e-71
Identities = 60/262 (22%), Positives = 109/262 (41%), Gaps = 10/262 (3%)
Query: 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
+ + G+ + INRP+ +NA + +A ++A + V V++L G
Sbjct: 2 SLHPHLNANLE--GGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAE 59
Query: 126 TEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
F +G D + + G++ L RL KP+I V G A+G G +
Sbjct: 60 -HDFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTIL 118
Query: 185 MVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEK 243
+ DL A + A+F +G + G S ++ + G KA E+ F A+ + AE A +
Sbjct: 119 LQADLVFADNTALFQIPFVSLGLSPEGG-ASQLLVKQAGYHKAAELLFTAKKFNAETALQ 177
Query: 244 MGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNA-VDDGHAGLQTLGGDATLI 302
GLVN +V ++ + +++ K+ + +D +
Sbjct: 178 AGLVNEIVE--DAYATAQATAQHLTALPLASLKQTKALMKHDLDQIIECIDHEAEIFMQR 235
Query: 303 FYGTEEGSEGKTAFVERRRPDF 324
+ E E AF+++R+PDF
Sbjct: 236 V-QSPEMLEAVQAFMQKRQPDF 256
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 220 bits (563), Expect = 5e-71
Identities = 71/264 (26%), Positives = 110/264 (41%), Gaps = 8/264 (3%)
Query: 64 SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
S + +++ E+ + +T+NRP RRNA + V + A+++ D + ILTG
Sbjct: 4 SMSAARELLVERD--GPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTG 61
Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
G A+C GGD + + + L KP+IA V G +GGG +
Sbjct: 62 AG-SAYCVGGDLSDGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEM 120
Query: 184 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEAE 242
D+ ++ ++A FG + G G GS + + R + KA EM TA EA
Sbjct: 121 LQQTDIRVSDEHATFGLPEVQRGLV-PGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAY 179
Query: 243 KMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH--AGLQTLGGDAT 300
GLV VVP + + I+RN P A+R K A+
Sbjct: 180 HFGLVGHVVPAGTALDKARSLADRIVRNGPLAVRNAKEAIVRSGWLAEEDARAIEARLTR 239
Query: 301 LIFYGTEEGSEGKTAFVERRRPDF 324
+ + + EG AF E+R F
Sbjct: 240 PVI-TSADAREGLAAFKEKREARF 262
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278 | Back alignment and structure |
|---|
Score = 219 bits (560), Expect = 2e-70
Identities = 73/268 (27%), Positives = 130/268 (48%), Gaps = 10/268 (3%)
Query: 62 DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
+G D + E+ +T+NRP RRNA ++ ++ A++ +D + IL
Sbjct: 13 PANGESGPDALVEQR--GHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCIL 70
Query: 122 TGKGTEAFCSGGD--QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179
TG G FC+G D A + G + + + +D ++ RRL KP+IA V G A+ G
Sbjct: 71 TGAG-GYFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAG 129
Query: 180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTA 238
G + D+ +AA++A FG + K + GS++ + R + A ++ R TA
Sbjct: 130 GTEILQGTDIRVAAESAKFGISEAKWSLY-PMGGSAVRLVRQIPYTVACDLLLTGRHITA 188
Query: 239 EEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH--AGLQTLG 296
EA++MGLV VVP + + ++ + I N P A++ + + + H +
Sbjct: 189 AEAKEMGLVGHVVPDGQALTKALEIAEIIAANGPLAVQAILRTIRETEGMHENEAFKIDT 248
Query: 297 GDATLIFYGTEEGSEGKTAFVERRRPDF 324
+F +++ EG AF ++R+P+F
Sbjct: 249 RIGIEVF-LSDDAKEGPQAFAQKRKPNF 275
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 218 bits (558), Expect = 3e-70
Identities = 67/264 (25%), Positives = 114/264 (43%), Gaps = 9/264 (3%)
Query: 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK 124
G+ T++ E +G+A +T++ P RN+F ++L A+ DD +V VI+LTG
Sbjct: 3 GSMVTELHEEIR--DGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGA 60
Query: 125 GTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
AFCSG + + +Q L PVIA V G+A+G G L
Sbjct: 61 P-PAFCSGAQ--ISAAAETFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLA 117
Query: 185 MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKM 244
+ D+ I A+ + + G + RLVG A E+ ++A+ A +
Sbjct: 118 LHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVET 177
Query: 245 GLVNTVVPLEKLEQETIKWSREILRN-SPTAIRVLKSALNAVDDGHAGLQTLGGDATLIF 303
GL N +P K+ ++ + +I N +P + + K L + T
Sbjct: 178 GLANRCLPAGKVLGAALRMAHDIATNVAPESAALTKRLLWDAQMTGMSAAEVAARETADH 237
Query: 304 Y---GTEEGSEGKTAFVERRRPDF 324
G+++ +EG AF++ R P +
Sbjct: 238 LRLMGSQDAAEGPRAFIDGRPPRW 261
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265 | Back alignment and structure |
|---|
Score = 217 bits (556), Expect = 5e-70
Identities = 71/268 (26%), Positives = 110/268 (41%), Gaps = 18/268 (6%)
Query: 62 DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
+ +G +++ E+ + I ITINRP +N+ + L A + D+ + V IL
Sbjct: 8 ELNGDTEPEVLVEQR--DRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGIL 65
Query: 122 TGKGTEAFCSGGD--QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179
TG G +FC+G D R + + G R KP+IA V GYA+ G
Sbjct: 66 TGAG-GSFCAGMDLKAFARGENVVVEGRGLGF--------TERPPAKPLIAAVEGYALAG 116
Query: 180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTA 238
G L + DL +AA ++ FG K G AG G + + + A E+ +A
Sbjct: 117 GTELALATDLIVAARDSAFGIPEVKRGLV-AGGGGLLRLPERIPYAIAMELALTGDNLSA 175
Query: 239 EEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH--AGLQTLG 296
E A +G+VN + I + +I N P A+ K +
Sbjct: 176 ERAHALGMVNVLAEPGAALDAAIALAEKITANGPLAVAATKRIITESRGWSLDTRFAQQM 235
Query: 297 GDATLIFYGTEEGSEGKTAFVERRRPDF 324
IF + + EG AF E+R P +
Sbjct: 236 KILFPIF-TSNDAKEGAIAFAEKRPPRW 262
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263 | Back alignment and structure |
|---|
Score = 217 bits (556), Expect = 6e-70
Identities = 92/273 (33%), Positives = 132/273 (48%), Gaps = 28/273 (10%)
Query: 64 SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
S T +T I + G+ I ++RPD NA E++ A D D +G I++TG
Sbjct: 4 SMTTYTTIATSR-PVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTG 62
Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
AF +G D A L+ D + ++ KP++A VAGYA+GGG L
Sbjct: 63 SE-RAFAAGADIAEMVTLTPHQARERNLLSGWD---SLTQVRKPIVAAVAGYALGGGCEL 118
Query: 184 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEK 243
M+CDL IAAD A FGQ +G G+ ++R VG KA ++ R TAEEAE+
Sbjct: 119 AMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAER 178
Query: 244 MGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATL-- 301
+GLV+ +VP L E + ++ I R S A R +K A+N + L
Sbjct: 179 VGLVSRIVPAADLLDEALAVAQRIARMSRPAGRAVKDAINE-----------AFERPLSA 227
Query: 302 -------IFY---GTEEGSEGKTAFVERRRPDF 324
FY T + +EG TAF+E+R P+F
Sbjct: 228 GMRYERDAFYAMFDTHDQTEGMTAFLEKRTPEF 260
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 1e-69
Identities = 81/303 (26%), Positives = 122/303 (40%), Gaps = 29/303 (9%)
Query: 39 MNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPH 98
M +H G + + + ++YE G G+A IT NR DR NA+ P
Sbjct: 1 MAHHHHHHMGTLEAQTQG--PGSMSAADAQDAVLYEATPG-GVAIITFNRADRLNAWGPD 57
Query: 99 TVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-------QALRTRDGYADYENFGR 151
A + A D + VI+LTG+G FC+G A N
Sbjct: 58 LAAGFYAAIDRAEADPGIRVIVLTGRGR-GFCAGAYLGSADAAAGYDKTMAKAKDANLAD 116
Query: 152 LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAG 211
L + L KPVIA + G VG G ++CD+ AA A F + G A
Sbjct: 117 LVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLI-AE 175
Query: 212 YGSS-IMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRN 270
+G S I+ RL A ++ R + AEEA ++GLV VV E+L ++++ +I R
Sbjct: 176 FGISWILPRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARY 235
Query: 271 SPT-AIRVLKSALNA-----VDDGH---AGLQTLGGDATLIFYGTEEGSEGKTAFVERRR 321
++ V+K + V + L + EG +F+E+R
Sbjct: 236 CSPSSMAVIKRQVYGDATRDVVEATSHAEVLLREAM-------PRPDVIEGIVSFLEKRP 288
Query: 322 PDF 324
P F
Sbjct: 289 PQF 291
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261 | Back alignment and structure |
|---|
Score = 217 bits (554), Expect = 1e-69
Identities = 70/266 (26%), Positives = 118/266 (44%), Gaps = 17/266 (6%)
Query: 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
+ + +A I N + NA + +L++A +D + IIL
Sbjct: 2 SYQYVNVVTI--NKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSG 58
Query: 127 E-AFCSGGDQALRTRDGYAD--YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
F +G D G Y++ R + I++ PKP+I+MV G GG +
Sbjct: 59 SKVFSAGHDIHELPSGGRDPLSYDDPLR----QITRMIQKFPKPIISMVEGSVWGGAFEM 114
Query: 184 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEAE 242
M DL IAA + F T +G ++R G +E+ F A TA+ A
Sbjct: 115 IMSSDLIIAASTSTFSMTPVNLGVP-YNLVGIHNLTRDAGFHIVKELIFTASPITAQRAL 173
Query: 243 KMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH--AGLQ--TLGGD 298
+G++N VV +E+LE T++ + I +P AI V+K L + + H + + G
Sbjct: 174 AVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGM 233
Query: 299 ATLIFYGTEEGSEGKTAFVERRRPDF 324
++ +E+ EG AF+E+R+P+F
Sbjct: 234 RRAVY-DSEDYQEGMNAFLEKRKPNF 258
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274 | Back alignment and structure |
|---|
Score = 217 bits (555), Expect = 1e-69
Identities = 75/271 (27%), Positives = 122/271 (45%), Gaps = 15/271 (5%)
Query: 64 SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
F I YE A IT+NRPD NA PH + EL A+++A +D V ++++TG
Sbjct: 6 PVDSFDTIKYEVD--GHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTG 63
Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRL------NVLDLQVQIRRLPKPVIAMVAGYAV 177
G AFCSG D DG YE + R + KPV+ V G
Sbjct: 64 TG-RAFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICC 122
Query: 178 GGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF-- 235
G G D+ IA++ A F +G AG +SR++ A M + +
Sbjct: 123 GAGMDWVTTTDIVIASEQATFFDPHVSIGLV-AGRELVRVSRVLPRSIALRMALMGKHER 181
Query: 236 YTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH--AGLQ 293
+A+ A ++GL++ +V ++L + + + + N+P A+R + A+ +
Sbjct: 182 MSAQRAYELGLISEIVEHDRLLERAHEIADIVNSNAPLAVRGTRLAILKGLNVPLHEAEI 241
Query: 294 TLGGDATLIFYGTEEGSEGKTAFVERRRPDF 324
+ TE+ +EG AFVE+R+P++
Sbjct: 242 LAETFRERVL-RTEDAAEGPRAFVEKRQPNW 271
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243 | Back alignment and structure |
|---|
Score = 216 bits (553), Expect = 1e-69
Identities = 53/249 (21%), Positives = 98/249 (39%), Gaps = 14/249 (5%)
Query: 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
+ E G+ +IT+ RN F P V+ L F+ + V+ILTG G F
Sbjct: 5 QLTELG--NGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYG-NYFS 61
Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
SG + R + E DL I P+IA + G++ GGG +L + D
Sbjct: 62 SGASKEFLIRKTRGEVEVL------DLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFV 115
Query: 191 IAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNT 249
+ + +++ K G S I+ +G + A+EM + Y +E + G+
Sbjct: 116 VFSQESVYATNFMKYGFTPVGA-TSLILREKLGSELAQEMIYTGENYRGKELAERGIPFP 174
Query: 250 VVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG--HAGLQTLGGDATLIFYGTE 307
VV + + + ++I ++ ++ LK L+A ++ + + +
Sbjct: 175 VVSRQDVLNYAQQLGQKIAKSPRLSLVALKQHLSADIKAKFPEAIK-KELEIHQVTFNQP 233
Query: 308 EGSEGKTAF 316
E +
Sbjct: 234 EIASRIQQE 242
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287 | Back alignment and structure |
|---|
Score = 217 bits (555), Expect = 2e-69
Identities = 60/265 (22%), Positives = 98/265 (36%), Gaps = 12/265 (4%)
Query: 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
++ + G+A+I ++ P N ++EL DDSSV VI+ +
Sbjct: 6 DAYSTLRVSSE--HGVARIILDNPPV-NVIGATMMRELRTVLTTLADDSSVRVIVFSSAD 62
Query: 126 TEAFCSGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
E F + D + + A + IR P+ I +AG A GGG
Sbjct: 63 PEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGA 122
Query: 182 VLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAE 239
D+ AA + A GQ +G G G + + VG +A E+ A + AE
Sbjct: 123 EFVAAADMAFAAAETAGLGQIEALMGII-PGGGGTQYLRGRVGRNRALEVVLTADLFDAE 181
Query: 240 EAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDA 299
A G +N +P ++L++ + +R I I K +L A DD GL
Sbjct: 182 TAASYGWINRALPADELDEYVDRVARNIAALPDGVIEAAKRSLPA-DDLKEGLLGENDAW 240
Query: 300 TLIFYGTEEGSEGKTAFVERRRPDF 324
F + + ++
Sbjct: 241 AATF-SLPAAQQLISGGLKDGAQTP 264
|
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272 | Back alignment and structure |
|---|
Score = 215 bits (551), Expect = 4e-69
Identities = 73/253 (28%), Positives = 120/253 (47%), Gaps = 10/253 (3%)
Query: 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
GI + INR +N+ + +K L +A + + D V II+ + FC+G D R
Sbjct: 20 RGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKER 79
Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
+ ++ F + + I LP P IA + G A+GGG L + CD+ +AA +A
Sbjct: 80 AKMSSSEVGPFVS-KIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKM 138
Query: 199 GQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP----L 253
G K+ G G + + R +G A+E+ F AR +EA+ +GL++ V+
Sbjct: 139 GLVETKLAII-PGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEG 197
Query: 254 EKLEQETIKWSREILRNSPTAIRVLKSALN-AVD-DGHAGLQTLGGDATLIFYGTEEGSE 311
+ ++ + +RE L P A+RV K A+N ++ D GL T++ E
Sbjct: 198 DAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTI-PTKDRLE 256
Query: 312 GKTAFVERRRPDF 324
G AF E+R P +
Sbjct: 257 GLLAFKEKRPPRY 269
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260 | Back alignment and structure |
|---|
Score = 215 bits (549), Expect = 6e-69
Identities = 88/266 (33%), Positives = 139/266 (52%), Gaps = 20/266 (7%)
Query: 68 FTDIIYEKAVGE-GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
F II EK + I +NRP NA ++EL +A +D +VG I+LTG G
Sbjct: 3 FQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTG-GE 61
Query: 127 EAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
+AF +G D + ++ R + D + L+ D I R+ KPVIA V GYA+GGG L M
Sbjct: 62 KAFAAGADIKEMQNRT-FQDCYSGKFLSHWD---HITRIKKPVIAAVNGYALGGGCELAM 117
Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMG 245
+CD+ A + A FGQ +G+ G+ ++R VG A EM +A++A++ G
Sbjct: 118 MCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAG 177
Query: 246 LVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLI--- 302
LV+ + P+E L +E I+ + +I NS + + K ++N A + + +
Sbjct: 178 LVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVN------AAFEMTLTEGNKLEKK 231
Query: 303 -FY---GTEEGSEGKTAFVERRRPDF 324
FY T++ EG +AFVE+R+ +F
Sbjct: 232 LFYSTFATDDRREGMSAFVEKRKANF 257
|
| >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267 | Back alignment and structure |
|---|
Score = 214 bits (548), Expect = 1e-68
Identities = 63/268 (23%), Positives = 109/268 (40%), Gaps = 11/268 (4%)
Query: 63 ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
S D A G +A++T+N P RNA V +L + DA D +V V++L
Sbjct: 3 GSMDALVDYAGPAATGGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLA 62
Query: 123 GKGTEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQV---QIRRLPKPVIAMVAGYAVG 178
G FC+G D + + + ++ I PVIA + G+
Sbjct: 63 HTG-GTFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRA 121
Query: 179 GGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTA 238
GG L CD+ +A + F T ++G S + + + A + + A
Sbjct: 122 GGFGLVGACDIAVAGPRSSFALTEARIGVA-PAIISLTLLPKLSARAAARYYLTGEKFDA 180
Query: 239 EEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH--AGLQTLG 296
AE++GL+ E L+ + ++ R SP + K+ A + L
Sbjct: 181 RRAEEIGLITMAA--EDLDAAIDQLVTDVGRGSPQGLAASKALTTAAVLERFDRDAERLA 238
Query: 297 GDATLIFYGTEEGSEGKTAFVERRRPDF 324
++ +F ++E EG AF+E+R P++
Sbjct: 239 EESARLF-VSDEAREGMLAFLEKRSPNW 265
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278 | Back alignment and structure |
|---|
Score = 215 bits (549), Expect = 1e-68
Identities = 90/280 (32%), Positives = 129/280 (46%), Gaps = 9/280 (3%)
Query: 47 HGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRA 106
H + + I+ E+ + + IT+NRP NA + E+ A
Sbjct: 3 HHHHHHMGTLEAQTQGPGSMTYETILVERD--QRVGIITLNRPQALNALNSQVMNEVTSA 60
Query: 107 FNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPK 166
+ DD +G II+TG +AF +G D +AD ++ +
Sbjct: 61 ATELDDDPDIGAIIITGSA-KAFAAGADIKEMADLTFADAFTADFFATWG---KLAAVRT 116
Query: 167 PVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226
P IA VAGYA+GGG L M+CD+ IAAD A FGQ K+G GS ++R +G KA
Sbjct: 117 PTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKA 176
Query: 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVD 286
++ R A EAE+ GLV+ VVP + L E + I + S +A R+ K A+N
Sbjct: 177 MDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAARMAKEAVNRAF 236
Query: 287 DG--HAGLQTLGGDATLIFYGTEEGSEGKTAFVERRRPDF 324
+ GL F TE+ SEG AF+E+R P F
Sbjct: 237 ESSLSEGLLYERRLFHSAF-ATEDQSEGMAAFIEKRAPQF 275
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265 | Back alignment and structure |
|---|
Score = 214 bits (548), Expect = 1e-68
Identities = 69/266 (25%), Positives = 126/266 (47%), Gaps = 10/266 (3%)
Query: 63 ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
T+ + K +GIA+I ++ + N++ KE A +D R D + V+I+
Sbjct: 3 AVETKKQYLTVFKE--DGIAEIHLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVM 59
Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
+ F +G D F + +I R P+ IA + G+ VGGG
Sbjct: 60 SDVPKFFSAGADINFLRSADPRFKTQFCLF-CNETLDKIARSPQVYIACLEGHTVGGGLE 118
Query: 183 LHMVCDLTIAADNAI-FGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEE 240
+ + CDL D A G +G AG G + ++RL+G +A +M T +E
Sbjct: 119 MALACDLRFMGDEAGKIGLPEVSLGVL-AGTGGTQRLARLIGYSRALDMNITGETITPQE 177
Query: 241 AEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG--HAGLQTLGGD 298
A ++GLVN V P + + T +++R++ ++ A+ +K A+ + + ++ G
Sbjct: 178 ALEIGLVNRVFPQAETRERTREYARKLANSATYAVSNIKLAIMNGKEMPLNVAIRYEGEL 237
Query: 299 ATLIFYGTEEGSEGKTAFVERRRPDF 324
L+F +E+ EG +AF+E+R+P++
Sbjct: 238 QNLLF-RSEDAKEGLSAFLEKRQPNW 262
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263 | Back alignment and structure |
|---|
Score = 213 bits (545), Expect = 2e-68
Identities = 55/225 (24%), Positives = 88/225 (39%), Gaps = 10/225 (4%)
Query: 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
+ D + + + EG+ +T+ R + + L A A D V V+++ G G
Sbjct: 2 SLSQDGLLGEVLSEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPG 60
Query: 126 TEAFCSGGD------QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGG 179
FC+G D +G A + L + + PKP IA+V G A
Sbjct: 61 -RIFCAGHDLKEIGRHRADPDEGRAFVTDLFEA-CSALMLDLAHCPKPTIALVEGIATAA 118
Query: 180 GHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE 239
G L CDL A+ A F G + G F + +SR++G + EM Y A+
Sbjct: 119 GLQLMAACDLAYASPAARFCLPGVQNGGF-CTTPAVAVSRVIGRRAVTEMALTGATYDAD 177
Query: 240 EAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNA 284
A GL+N ++P L + + + +R LN
Sbjct: 178 WALAAGLINRILPEAALATHVADLAGALAARNQAPLRRGLETLNR 222
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280 | Back alignment and structure |
|---|
Score = 214 bits (546), Expect = 3e-68
Identities = 67/267 (25%), Positives = 108/267 (40%), Gaps = 12/267 (4%)
Query: 62 DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
F ++ +GI KI NRP ++NA E++RA A D S+ + +L
Sbjct: 19 YFQSMGFETLVVTSE--DGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVL 75
Query: 122 TGKGTEAFCSGGD---QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVG 178
TG G + + SG D G + + + + PKP+IA+V G AVG
Sbjct: 76 TGNG-DYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVG 134
Query: 179 GGHVLHMVCDLTIAADNAIFGQTGPKVG-SFDAGYGSSIMSRLVGPKKAREMWFLARFYT 237
L + D A+D A F +G S + S +++ P KA EM + T
Sbjct: 135 ISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGC-SSYTFPKIMSPAKATEMLIFGKKLT 193
Query: 238 AEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG--HAGLQTL 295
A EA GLV V P ++E + + P A+R+ K + + HA
Sbjct: 194 AGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHAVNA-E 252
Query: 296 GGDATLIFYGTEEGSEGKTAFVERRRP 322
+ + ++E + F+ R+
Sbjct: 253 ECNVLQGRWLSDECTNAVVNFLSRKSK 279
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 7e-68
Identities = 67/270 (24%), Positives = 110/270 (40%), Gaps = 21/270 (7%)
Query: 64 SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
S + + IA T+N NA + ++ + D ++ V+++ G
Sbjct: 1 SNAMLKFLSVRVE--DHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHG 57
Query: 124 KGTEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
+G F +G D + + +L ++ + KPVIA + G A+GGG
Sbjct: 58 EG-RFFSAGADIKEFTSVTEAKQATELAQL-GQVTFERVEKCSKPVIAAIHGAALGGGLE 115
Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEA 241
M C + A ++A G +G G+ + + R VG KA EM + T EA
Sbjct: 116 FAMSCHMRFATESAKLGLPELTLGLI-PGFAGTQRLPRYVGKAKACEMMLTSTPITGAEA 174
Query: 242 EKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATL 301
K GLVN V E +T+K +++I SP R + L + +
Sbjct: 175 LKWGLVNGVFAEETFLDDTLKVAKQIAGKSPATARAVLELLQ------TTKSSHYYEGVQ 228
Query: 302 I----FY---GTEEGSEGKTAFVERRRPDF 324
F +E+G EG AF+E+R+P F
Sbjct: 229 REAQIFGEVFTSEDGREGVAAFLEKRKPSF 258
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263 | Back alignment and structure |
|---|
Score = 211 bits (540), Expect = 1e-67
Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 8/226 (3%)
Query: 62 DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
E T++ ++ + + GI ++ ++ F T +E AF D D V+IL
Sbjct: 16 PEYFTKYENLHFHRDEN-GILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVIL 74
Query: 122 TGKGTEAFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGG 180
TG G +A+ + D +L +++ + + + PVI+ V G A+
Sbjct: 75 TGSG-DAWMAEIDFPSLGDVTNPREWDKTYWEG-KKVLQNLLDIEVPVISAVNGAALLHS 132
Query: 181 HVLHMVCDLTIAADNAIF-GQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTA 238
+ D+ +A++N +F G G G I +G + R F TA
Sbjct: 133 E-YILTTDIILASENTVFQDMPHLNAGIV-PGDGVHILWPLALGLYRGRYFLFTQEKLTA 190
Query: 239 EEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNA 284
++A ++ +V+ V+P KL + + +R + + +R + AL
Sbjct: 191 QQAYELNVVHEVLPQSKLMERAWEIARTLAKQPTLNLRYTRVALTQ 236
|
| >3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276 | Back alignment and structure |
|---|
Score = 212 bits (541), Expect = 2e-67
Identities = 65/256 (25%), Positives = 100/256 (39%), Gaps = 11/256 (4%)
Query: 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
T+I + IT+NRPD N+ L R + DD + ++TG G
Sbjct: 27 PTEIDVRAD--GALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGR- 83
Query: 128 AFCSGGD-QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
AF +GGD L+ AD + ++ + + R PV+A V G AVG G L +
Sbjct: 84 AFSAGGDFGYLKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVAL 143
Query: 187 CDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMG 245
D+ A+NA +VG G G + A+E +A+ A ++G
Sbjct: 144 SDIVYIAENAYLADPHVQVGLVAADG-GPLTWPLHISLLLAKEYALTGTRISAQRAVELG 202
Query: 246 LVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG--HAGLQTLGGDATLIF 303
L N V E I +++IL A+ K LN + A L A
Sbjct: 203 LANHVAD--DPVAEAIACAKKILELPQQAVESTKRVLNIHLERAVLASLD-YALSAESQS 259
Query: 304 YGTEEGSEGKTAFVER 319
+ TE+ T ++
Sbjct: 260 FVTEDFRSIVTKLADK 275
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256 | Back alignment and structure |
|---|
Score = 211 bits (539), Expect = 2e-67
Identities = 71/257 (27%), Positives = 108/257 (42%), Gaps = 15/257 (5%)
Query: 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
++ E+ + + ITINRPD RNA + L A + + + V I+TG G FC
Sbjct: 9 VLIEQR--DRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAG-GNFC 65
Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
+G D E KP+IA V G+A+ GG L + CDL
Sbjct: 66 AGMDLKAFVSGEAVLSERGLGFT-------NVPPRKPIIAAVEGFALAGGTELVLSCDLV 118
Query: 191 IAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEAEKMGLVNT 249
+A +A FG K G AG G + + + + A E+ +TAE+A K G +N
Sbjct: 119 VAGRSAKFGIPEVKRGLV-AGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINR 177
Query: 250 VVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH--AGLQTLGGDATLIFYGTE 307
+V + ++ + +I N P A+ K + G IF +E
Sbjct: 178 LVDDGQALDTALELAAKITANGPLAVAATKRIIIESASWAPEEAFAKQGEILMPIF-VSE 236
Query: 308 EGSEGKTAFVERRRPDF 324
+ EG AF E+R P +
Sbjct: 237 DAKEGAKAFAEKRAPVW 253
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 4e-67
Identities = 50/226 (22%), Positives = 86/226 (38%), Gaps = 10/226 (4%)
Query: 62 DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
E ++ +I E+ G+ +T++ + + EL F+D D V+IL
Sbjct: 9 QEYSQKYENIRLERD--GGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVIL 66
Query: 122 TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
TG G +FC+ D D++ L + + PVIA V G
Sbjct: 67 TGTG-PSFCNEIDFTSFNLGTPHDWDEIIFE-GQRLLNNLLSIEVPVIAAVNGPVTNAPE 124
Query: 182 VLHMVCDLTIAADNAIFGQTGP--KVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYTA 238
+ ++ D+ +AA++A F GP G G + ++G + R + A
Sbjct: 125 -IPVMSDIVLAAESATFQD-GPHFPSGIVPGDG-AHVVWPHVLGSNRGRYFLLTGQELDA 181
Query: 239 EEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNA 284
A G VN V+ ++L + +R I A R + L
Sbjct: 182 RTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLARRYARKVLTR 227
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291 | Back alignment and structure |
|---|
Score = 211 bits (538), Expect = 6e-67
Identities = 58/277 (20%), Positives = 99/277 (35%), Gaps = 21/277 (7%)
Query: 63 ESGTEFTDIIYEKAVGEGIAKIT-INRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
+ + DI+ +K +G +I R +NA +KE++ A N A D +++
Sbjct: 17 RGSSTYRDIVVKKE--DGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADD-SKLVLF 73
Query: 122 TGKGTEAFCSGGD---QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVG 178
+ G FC G D R+ + + + KP++ V G A+G
Sbjct: 74 SAAG-SVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIG 132
Query: 179 GGHVLHMVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFYT 237
G + +CDL A + A F G D S +++G A EM R T
Sbjct: 133 LGASILPLCDLVWANEKAWFQTPYTTFGQSPDGC-SSITFPKMMGKASANEMLIAGRKLT 191
Query: 238 AEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG--HAGLQTL 295
A EA GLV+ V QE + +E+ +P + K+ + +
Sbjct: 192 AREACAKGLVSQVFLTGTFTQEVMIQIKELASYNPIVLEECKALVRCNIKLELEQANE-R 250
Query: 296 GGDATLIFYGTEEGSEG--------KTAFVERRRPDF 324
+ + + +G E A R+
Sbjct: 251 ECEVLRKIWSSAQGIESMLKIPLLGYKAAFPPRKTQN 287
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 1e-66
Identities = 52/259 (20%), Positives = 98/259 (37%), Gaps = 8/259 (3%)
Query: 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
+ I + T N P N P V++L+ + ++ V+I
Sbjct: 5 ASYETIKARLD--GTVLSATFNAPPM-NLIGPEVVRDLVALLEELAHPTAPRVVIFDSAD 61
Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVLDLQV--QIRRLPKPVIAMVAGYAVGGGHVL 183
+ F D + G + + ++ +LP IA + G A G G
Sbjct: 62 ADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEF 121
Query: 184 HMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
+ CD+ A+ +NAI GQ +G+ ++RL+G +A E + + A+ AE
Sbjct: 122 LLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAE 181
Query: 243 KMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVD-DGHAGLQTLGGDATL 301
+ G VN VP +L++ + + A+ KSA+NA+ A ++
Sbjct: 182 RYGWVNRAVPDAELDEFVAGIAARMSGFPRDALIAAKSAINAISLPAPAEVRADAALFQQ 241
Query: 302 IFYGTEEGSEGKTAFVERR 320
+ E+ + ++
Sbjct: 242 LV-RGEKVQQRTAELFKQG 259
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260 | Back alignment and structure |
|---|
Score = 208 bits (533), Expect = 1e-66
Identities = 49/261 (18%), Positives = 102/261 (39%), Gaps = 13/261 (4%)
Query: 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
++ E G G+A + P N+ + EL+ + +D S +ILT F
Sbjct: 5 VLVEPDAGAGVAVMKFKNP-PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFS 63
Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
+G D A Y + + V +L +++ + +++ + G GG ++ + CD
Sbjct: 64 AGLDLTEMCGRSPAHYAGYWKA-VQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYR 122
Query: 191 IAADNAIF--GQTGPKVGSFDAGY-GSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLV 247
I ADN + G ++G A + + +G + A L + EA ++G+V
Sbjct: 123 ILADNPRYCIGLNETQLGII-APFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIV 181
Query: 248 NTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH--AGLQTLGGDATL--IF 303
+ VVP E+++ + + + A ++ K+ + D F
Sbjct: 182 DQVVPEEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATASRLVTQRDA---DVQNFVSF 238
Query: 304 YGTEEGSEGKTAFVERRRPDF 324
+ + ++ER + +
Sbjct: 239 ISKDSIQKSLQMYLERLKEEK 259
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277 | Back alignment and structure |
|---|
Score = 208 bits (532), Expect = 4e-66
Identities = 64/263 (24%), Positives = 111/263 (42%), Gaps = 8/263 (3%)
Query: 64 SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG 123
G+ + +G+A + ++RP NA +E++ A ++ +G ++L G
Sbjct: 19 PGSMNEFVSVVAD--QGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFG 75
Query: 124 KGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVL 183
G E F +G D + + R L+ + +PKP +A V GYA+G G L
Sbjct: 76 -GHEIFSAGDDMPELRTLNAPEADTAAR-VRLEAIDAVAAIPKPTVAAVTGYALGAGLTL 133
Query: 184 HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEK 243
+ D ++ DN FG T G G G ++R+VG +A+E+ F RF+ AEEA
Sbjct: 134 ALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALA 193
Query: 244 MGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG--HAGLQTLGGDATL 301
+GL++ +V + + + W+R L P A+ K+ +N V +
Sbjct: 194 LGLIDDMVAPDDVYDSAVAWARRYLECPPRALAAAKAVINDVFELEATERAAAERRRYVE 253
Query: 302 IFYGTEEGSEGKTAFVERRRPDF 324
+F + D
Sbjct: 254 LF-AAGQRGPDGRGPGGGNTGDQ 275
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262 | Back alignment and structure |
|---|
Score = 207 bits (530), Expect = 5e-66
Identities = 69/257 (26%), Positives = 102/257 (39%), Gaps = 13/257 (5%)
Query: 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
+ EKA + + +NRP RNA T L+ AF + D V +L G FC
Sbjct: 13 VRVEKA--GPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDN-GTFC 69
Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
+G D D + G + RL KPVIA ++G+AV GG L + CDL
Sbjct: 70 AGADLKAMGTDRGNELHPHGPGPMGP---SRLRLSKPVIAAISGHAVAGGIELALWCDLR 126
Query: 191 IAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEAEKMGLVNT 249
+ ++A+ G + G G +I + RL+G +A ++ R A EA +GLVN
Sbjct: 127 VVEEDAVLGVFCRRWGVP-LIDGGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNR 185
Query: 250 VVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH--AGLQTLGGDATLIFYGTE 307
VV + + + EI +R + + A A L + I
Sbjct: 186 VVARGQAREAAETLAAEIAAFPQQCVRADRDSAIAQWGMAEEAALDN---EFGSIERVAT 242
Query: 308 EGSEGKTAFVERRRPDF 324
E EG F
Sbjct: 243 EALEGAGRFAAGEGRHG 259
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258 | Back alignment and structure |
|---|
Score = 207 bits (529), Expect = 6e-66
Identities = 57/258 (22%), Positives = 94/258 (36%), Gaps = 8/258 (3%)
Query: 63 ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
E+ + + E+ + I ++R +RNAF + +L A + +L
Sbjct: 6 EANSGPGRVTREQR--GHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLF 63
Query: 123 GKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHV 182
G E F +G D A + V V R KP++ V G G
Sbjct: 64 AHG-EHFTAGLDLMELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIE 122
Query: 183 LHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSI-MSRLVGPKKAREMWFLARFYTAEEA 241
L + D+ +AA F G GS++ R G A + A+EA
Sbjct: 123 LMLNADIAVAARGTRFAHLEVLRGIP-PLGGSTVRFPRAAGWTDAMRYILTGDEFDADEA 181
Query: 242 EKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH--AGLQTLGGDA 299
+M L+ VV + ++++ I R +P A+R + D A L +
Sbjct: 182 LRMRLLTEVVEPGEELARALEYAERIARAAPLAVRAALQSAFQGRDEGDDAALSRVNESL 241
Query: 300 TLIFYGTEEGSEGKTAFV 317
+ G+E+ EG A V
Sbjct: 242 AALI-GSEDVREGVLAMV 258
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275 | Back alignment and structure |
|---|
Score = 198 bits (507), Expect = 2e-62
Identities = 67/274 (24%), Positives = 110/274 (40%), Gaps = 30/274 (10%)
Query: 77 VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-- 134
+ + + +NRP++RNA +EL+ F DS ++++G G + F SG D
Sbjct: 10 AQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG-KMFTSGIDLM 68
Query: 135 -----QALRTRDGYADYENFGRLNVLDLQV---QIRRLPKPVIAMVAGYAVGGGHVLHMV 186
D A + R + Q I + PKPVIA + G +GGG L
Sbjct: 69 DMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISA 128
Query: 187 CDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPK-KAREMWFLARFYTAEEAEKM 244
CD+ +A F VG D G + +++G + E+ F AR A+EA
Sbjct: 129 CDIRYCTQDAFFQVKEVDVGLAADVG-TLQRLPKVIGNRSLVNELTFTARKMMADEALDS 187
Query: 245 GLVNTVVPL-EKLEQETIKWSREILRNSPTAIRVLKSALNA-----VDDG---HAGLQTL 295
GLV+ V P + + + +I SP A++ K L VD+ A
Sbjct: 188 GLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMS 247
Query: 296 GGDATLIFYGTEEGSEGKTAFVERRRPDFLKFPR 329
T++ + A +E++ + F +
Sbjct: 248 -------MLQTQDIIKSVQAAMEKKDSKSITFSK 274
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440 | Back alignment and structure |
|---|
Score = 203 bits (519), Expect = 2e-62
Identities = 67/284 (23%), Positives = 112/284 (39%), Gaps = 32/284 (11%)
Query: 63 ESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILT 122
E + E+ +G+A++T+ R DR NA V ++ A + A D V V +L
Sbjct: 161 TGEVEMEAVHLERR--DGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLR 218
Query: 123 G--------KGTEAFCSGGD-------------QALRTRDGYADYENFGRLNVLDLQV-- 159
G +G F +G + +R GY G L D
Sbjct: 219 GGVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWW 278
Query: 160 QIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR 219
R+ KP +A V G+A+GGG L +V D +A+ +A F K G G + + R
Sbjct: 279 HSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGII-PGAANLRLGR 337
Query: 220 LVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLK 279
GP+ +R++ R A+E E LV+ VV ++L+ + + ++ A +
Sbjct: 338 FAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDGDAVLAN---R 394
Query: 280 SALNAVDDGHAGLQTLGGDATLIF---YGTEEGSEGKTAFVERR 320
LN D+ G + + L+ + + F R
Sbjct: 395 RMLNLADESPDGFRAYMAEFALMQALRLYGHDVIDKVGRFGGRP 438
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 3e-59
Identities = 36/276 (13%), Positives = 79/276 (28%), Gaps = 25/276 (9%)
Query: 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
+ I Y I + PD NA L A + V I+ G
Sbjct: 7 QNEKISYRIE--GPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSG- 63
Query: 127 EAFCSGGD----------QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYA 176
F SG D + + + + + + + K +I + G A
Sbjct: 64 RFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPA 123
Query: 177 VGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSS-IMSRLVGPKKAREMWFLAR 234
+G L +CD+ + D +G G++ + G E +
Sbjct: 124 IGLSAALVALCDIVYSINDKVYLLYPFANLG-LITEGGTTVSLPLKFGTNTTYECLMFNK 182
Query: 235 FYTAEEAEKMGLVNTVVPLEKLEQETI------KWSREILRNSPTAIRVLKSALNAVDDG 288
+ + + G ++ + E + ++ + +K L +
Sbjct: 183 PFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNHID 242
Query: 289 --HAGLQTLGGDATLIFYGTEEGSEGKTAFVERRRP 322
+ + + +L ++ E + ++R
Sbjct: 243 AFNKANS-VEVNESLKYWVDGEPLKRFRQLGSKQRK 277
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233 | Back alignment and structure |
|---|
Score = 185 bits (472), Expect = 9e-58
Identities = 42/214 (19%), Positives = 77/214 (35%), Gaps = 6/214 (2%)
Query: 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
+ Y + I I ++ + N P + L A + A D+ VG +++ G F
Sbjct: 7 VTYTHD--DAIGVIRMDDG-KVNVLGPTMQQALNEAIDAADRDN-VGALVIAGNH-RVFS 61
Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
G D + T + R +L ++ PKPV+ G+A+ G L D
Sbjct: 62 GGFDLKVLTSGEAKPAIDMLR-GGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHR 120
Query: 191 IAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250
+AA +G ++ + P ++ LA+ + E A G ++ +
Sbjct: 121 VAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEI 180
Query: 251 VPLEKLEQETIKWSREILRNSPTAIRVLKSALNA 284
E + + +RE + A K A
Sbjct: 181 SLPEVVLSRAEEAAREFAGLNQQAHNATKLRARA 214
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 3e-54
Identities = 43/215 (20%), Positives = 81/215 (37%), Gaps = 9/215 (4%)
Query: 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
+ Y +G+A +T+N + NA P + A + A D ++I+TG+
Sbjct: 8 VSYHLD--DGVATLTLNNG-KVNAISPDVIIAFNAALDQAEKD--RAIVIVTGQPG-ILS 61
Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
G D + T A + + L ++ P P+I G+AV G L + D
Sbjct: 62 GGYDLKVMTSSAEAAINLVAQGS--TLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYR 119
Query: 191 IA-ADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNT 249
I A G ++G G + + A + E A G ++
Sbjct: 120 IGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAGFLDK 179
Query: 250 VVPLEKLEQETIKWSREILRNSPTAIRVLKSALNA 284
VV +E+L+ + + ++ + + A + K +
Sbjct: 180 VVSVEELQGAALAVAAQLKKINMNAHKKTKLKVRK 214
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 1e-53
Identities = 47/263 (17%), Positives = 86/263 (32%), Gaps = 20/263 (7%)
Query: 40 NDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDR----RNAF 95
+ +H + S V + + II E + I ++ R F
Sbjct: 4 SHHHHHHSQDPNSMSAV-QPFIRTNIGSTLRIIEEPQ--RDVYWIHMHADLAINPGRACF 60
Query: 96 RPHTVKELIRAFN----DARDDSSVGVIILTGKGTEAFCSGGD----QALRTRDGYADYE 147
V ++ + ++ ++ F GGD L A
Sbjct: 61 STRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLL 120
Query: 148 NFGR--LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV 205
++ + + + IA+V G A+GGG + C IA + + G
Sbjct: 121 DYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLF 180
Query: 206 GSFDAGYG-SSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWS 264
F G G S M + + A+++ Y+AE+ MGLV+ VVP + +
Sbjct: 181 DLF-PGMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVI 239
Query: 265 REILRNSPTAIRVLKSALNAVDD 287
R + +P A ++
Sbjct: 240 R-ESKRTPHAWAAMQQVREMTTA 261
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 2e-48
Identities = 48/288 (16%), Positives = 85/288 (29%), Gaps = 29/288 (10%)
Query: 58 RIACDESGTEFTDIIYEKAVGEGIAKITINRPDRR----------NAFRPHTVKELIRAF 107
+ +++ +A + I+ + N++ EL A
Sbjct: 10 PVDYRTDPSQYKHWKLS--FNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAI 67
Query: 108 NDAR-DDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRL---NVLDLQVQIRR 163
R + V ++LT FCSG + + +A NF + L+ R
Sbjct: 68 QRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRH 127
Query: 164 LPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD--NAIFGQTGPKVGSFDAGYGSS---IMS 218
+A V G GGG+ L + CD D ++ + G G
Sbjct: 128 SGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDK 187
Query: 219 RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVL 278
R V +A + E A+ LV+ VV + +Q + E+ S
Sbjct: 188 RKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAHAQ 247
Query: 279 KSALNAVDDGHAGLQTLGGDATL--IFYGTEEGSEGKTAFVERRRPDF 324
L +T D T + ++ F +
Sbjct: 248 GVPLT------RIERTDREDGLTYKTLDVTIDRAKRIATFTAKAPQTE 289
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 7e-07
Identities = 40/248 (16%), Positives = 72/248 (29%), Gaps = 27/248 (10%)
Query: 62 DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKE---------LIRAFNDA-- 110
E G + + + IA T P + R F+DA
Sbjct: 259 REDGLTYKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAIL 318
Query: 111 ---RDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKP 167
++ +VG + +G D +L + + + +I +
Sbjct: 319 SMRTNELAVGTWVFRTEGDARHLLAADASLMQHKDHW-FVRETIGLLRRTLARIDVSSRS 377
Query: 168 VIAMV-AGYAVGGGHV-LHMVCDLTIAADNAIFGQTGPKVGSFDAGYG--------SSIM 217
+ A++ G G L D T A P + + +G S +
Sbjct: 378 LFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGLYPMVTHQSRLA 437
Query: 218 SRLVGPKKAREMWF--LARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAI 275
R + + + + EAE++GLV E E SP A+
Sbjct: 438 RRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDDIDWADEIRIALEERAAMSPDAL 497
Query: 276 RVLKSALN 283
L++ L
Sbjct: 498 TGLEANLR 505
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 5e-26
Identities = 54/206 (26%), Positives = 91/206 (44%), Gaps = 13/206 (6%)
Query: 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEA 128
+ E G+G+A IT+ P N+ + L + +A + V I++TG
Sbjct: 7 GKTVMEV-GGDGVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAK-GR 63
Query: 129 FCSGGD----QALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLH 184
F G D ++ + + ++ + + KP +A + G A+GGG L
Sbjct: 64 FSGGFDISGFGEMQKGNVKEPKAGYISID--IITDLLEAARKPSVAAIDGLALGGGLELA 121
Query: 185 MVCDLTIAADNAIFGQTGP--KVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAE 242
M C I+A A G P ++G G+ + RLVG KA EM ++ AEE
Sbjct: 122 MACHARISAPAAQLGL--PELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGH 179
Query: 243 KMGLVNTVVPLEKLEQETIKWSREIL 268
+GL++ VVP +L +W+ +I+
Sbjct: 180 SLGLIDAVVPPAELVTTARRWALDIV 205
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 8e-26
Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 14/202 (6%)
Query: 75 KAVGEGIAKITINRPDRR-NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGG 133
A+ GI ++ + N F T+ EL +A + + D+SV +I++ + F G
Sbjct: 11 TALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGK-DVFIVGA 69
Query: 134 D----QALRTRDGYADYENFGRLN-VLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCD 188
D N + L P +A + G A+GGG + + D
Sbjct: 70 DITEFVENFKLPDAELIAGNLEANKIFS---DFEDLNVPTVAAINGIALGGGLEMCLAAD 126
Query: 189 LTIAADNAIFGQTGP--KVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
+ AD+A G P K+G + G+ + RL+G A E + AE+A K+
Sbjct: 127 FRVMADSAKIGL--PEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSA 184
Query: 247 VNTVVPLEKLEQETIKWSREIL 268
V+ VV +KL + + +
Sbjct: 185 VDAVVTADKLGAAALDLIKRAI 206
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 55/234 (23%), Positives = 103/234 (44%), Gaps = 22/234 (9%)
Query: 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKG 125
+ + + +A I + P NA P ++E+ A D +V I++ G
Sbjct: 16 PRGSHMAEYLRLPHSLAMIRLCNP-PVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGAN 74
Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLN----VLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
FC+G AD F + L +I+R KPV+A + G A+GGG
Sbjct: 75 -GNFCAG-----------ADIHGFSAFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGL 122
Query: 182 VLHMVCDLTIAADNAIFGQTGP--KVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE 239
L + C IA A G P +G G+ ++ R+VG A ++ ++ +A+
Sbjct: 123 ELALGCHYRIANAKARVGL--PEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSAD 180
Query: 240 EAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQ 293
EA ++G+++ VV + +E E IK++++I+ R+ + ++ + +
Sbjct: 181 EALRLGILDAVVKSDPVE-EAIKFAQKIIDKPIEPRRIFNKPVPSLPNMDSVFA 233
|
| >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 7e-19
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 29/194 (14%)
Query: 80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD-QALR 138
IT+NRP NA + ++++ D +II+ G G +AFC+GGD + +
Sbjct: 15 CTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVIS 74
Query: 139 --TRDGYADYENFGR----LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIA 192
+ F R LN + KP +A++ G +GGG L + +A
Sbjct: 75 EAEKAKQKIAPVFFREEYMLNNA-----VGSCQKPYVALIHGITMGGGVGLSVHGQFRVA 129
Query: 193 ADNAIFGQTGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFY-------TAEEAEKM 244
+ +F +G F D G G + RL G L F + +
Sbjct: 130 TEKCLFAMPETAIGLFPDVG-GGYFLPRLQGK--------LGYFLALTGFRLKGRDVYRA 180
Query: 245 GLVNTVVPLEKLEQ 258
G+ V EKL
Sbjct: 181 GIATHFVDSEKLAM 194
|
| >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 2e-18
Identities = 47/246 (19%), Positives = 90/246 (36%), Gaps = 31/246 (12%)
Query: 32 IGLNNASMNDSYHRIHGEVPSHDVVWRIACDESGTEFTDIIYEK---AVGEGIAKITINR 88
+G ++ + S R + H S +++++ A G+ + +T+N
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGHMTNLVDKAAHSFAT-QNVVFQTLATASGKLVGVVTLNV 59
Query: 89 PDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGD------QALRTRDG 142
NA V+ + N + D + ++L G G +AFC+GGD ++ +
Sbjct: 60 EKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQ 119
Query: 143 YADY--ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ 200
+ F LD + KPV+ G +GGG L + + +
Sbjct: 120 VTEVAKVFFEEEYRLDY--LLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAM 177
Query: 201 TGPKVGSF-DAGYGSSIMSRLVGPKKAREMWFLARFY-------TAEEAEKMGLVNTVVP 252
+G + D G GS ++R+ G + F A +A +GL + +
Sbjct: 178 PEVTIGLYPDVG-GSYFLNRMPG--------KMGLFLGLTAYHMNAADACYVGLADHYLN 228
Query: 253 LEKLEQ 258
+ E
Sbjct: 229 RDDKEL 234
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 2e-04
Identities = 51/390 (13%), Positives = 115/390 (29%), Gaps = 114/390 (29%)
Query: 6 DSARRRMT-AVANHLVPVISSDSNSGFI-GLNNASMNDSYHRIHGEVPSHDVVW---RIA 60
D + ++ +H++ + S + + + + + EV + + I
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 61 CDESGTEFTDIIYEKAVGEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVI 119
++ +Y + N+ + N R +L +A + R +V +
Sbjct: 100 TEQRQPSMMTRMYIEQRDR---LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 120 ILTGKG--------------TEAFCSG------GD-----------QALRTR-----DGY 143
+ G G + Q L +
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 144 ADYENFGRLNVLDLQVQIRRL------PKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAI 197
+D+ + +L + +Q ++RRL ++ VL V +
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLL------------VLLNVQNAKA------ 258
Query: 198 FGQTGPKVGSFDAGYGSSIM--SRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEK 255
+F+ I+ +R + F +A + L + + L
Sbjct: 259 -------WNAFN--LSCKILLTTRFKQ---------VTDFLSAATTTHISLDHHSMTLTP 300
Query: 256 LEQETI--KW--------SREILRNSPTAIRVLKSALNAVDDGHA---GLQTLGGDA--T 300
E +++ K+ RE+L +P + ++ ++ DG A + + D T
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI---RDGLATWDNWKHVNCDKLTT 357
Query: 301 LI--FYGTEEGSEGKTAFVERRRPDFLKFP 328
+I E +E + F FP
Sbjct: 358 IIESSLNVLEPAEYRKMFD-----RLSVFP 382
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 331 | |||
| 3hrx_A | 254 | Probable enoyl-COA hydratase; the spiral fold, the | 100.0 | |
| 4fzw_C | 274 | 1,2-epoxyphenylacetyl-COA isomerase; structural ge | 100.0 | |
| 4fzw_A | 258 | 2,3-dehydroadipyl-COA hydratase; structural genomi | 100.0 | |
| 4eml_A | 275 | Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe | 100.0 | |
| 3t8b_A | 334 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 100.0 | |
| 3t89_A | 289 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 100.0 | |
| 3kqf_A | 265 | Enoyl-COA hydratase/isomerase family protein; IDP0 | 100.0 | |
| 3pea_A | 261 | Enoyl-COA hydratase/isomerase family protein; stru | 100.0 | |
| 3i47_A | 268 | Enoyl COA hydratase/isomerase (crotonase); structu | 100.0 | |
| 3fdu_A | 266 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3g64_A | 279 | Putative enoyl-COA hydratase; alpha-beta structure | 100.0 | |
| 3gow_A | 254 | PAAG, probable enoyl-COA hydratase; the spiral fol | 100.0 | |
| 3r9t_A | 267 | ECHA1_1; ssgcid, seattle structural genomics cente | 100.0 | |
| 3moy_A | 263 | Probable enoyl-COA hydratase; ssgcid, seattle stru | 100.0 | |
| 2uzf_A | 273 | Naphthoate synthase; lyase, menaquinone biosynthes | 100.0 | |
| 3p5m_A | 255 | Enoyl-COA hydratase/isomerase; seattle structural | 100.0 | |
| 3sll_A | 290 | Probable enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3qxz_A | 265 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 3rsi_A | 265 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3hin_A | 275 | Putative 3-hydroxybutyryl-COA dehydratase; structu | 100.0 | |
| 3h81_A | 278 | Enoyl-COA hydratase ECHA8; niaid, decode, infectio | 100.0 | |
| 3swx_A | 265 | Probable enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 4hdt_A | 353 | 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti | 100.0 | |
| 3tlf_A | 274 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 2ej5_A | 257 | Enoyl-COA hydratase subunit II; structural genomic | 100.0 | |
| 2pbp_A | 258 | Enoyl-COA hydratase subunit I; B-oxidation, struct | 100.0 | |
| 4f47_A | 278 | Enoyl-COA hydratase ECHA19; ssgcid, seattle struct | 100.0 | |
| 1nzy_A | 269 | Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen | 100.0 | |
| 3qre_A | 298 | Enoyl-COA hydratase, ECHA12_1; structural genomics | 100.0 | |
| 3trr_A | 256 | Probable enoyl-COA hydratase/isomerase; ssgcid, st | 100.0 | |
| 3qk8_A | 272 | Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB | 100.0 | |
| 2ppy_A | 265 | Enoyl-COA hydratase; beta-oxidation, fatty acid me | 100.0 | |
| 3hp0_A | 267 | Putative polyketide biosynthesis enoyl-COA hydrata | 100.0 | |
| 3r9q_A | 262 | Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome | 100.0 | |
| 3gkb_A | 287 | Putative enoyl-COA hydratase; structural genomics, | 100.0 | |
| 3he2_A | 264 | Enoyl-COA hydratase ECHA6; fatty acid metabolism, | 100.0 | |
| 3myb_A | 286 | Enoyl-COA hydratase; ssgcid, struct genomics, seat | 100.0 | |
| 2vx2_A | 287 | Enoyl-COA hydratase domain-containing protein 3; i | 100.0 | |
| 1ef8_A | 261 | Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc | 100.0 | |
| 3qxi_A | 265 | Enoyl-COA hydratase ECHA1; structural genomics, se | 100.0 | |
| 3lke_A | 263 | Enoyl-COA hydratase; nysgrc, target 112 structural | 100.0 | |
| 3qmj_A | 256 | Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, | 100.0 | |
| 2fbm_A | 291 | Y chromosome chromodomain protein 1, telomeric IS; | 100.0 | |
| 1dci_A | 275 | Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg | 100.0 | |
| 2j5i_A | 276 | P-hydroxycinnamoyl COA hydratase/lyase; vanillin, | 100.0 | |
| 3oc7_A | 267 | Enoyl-COA hydratase; seattle structural genomics c | 100.0 | |
| 1wz8_A | 264 | Enoyl-COA hydratase; lyase, crotonase, hexamer, st | 100.0 | |
| 2gtr_A | 261 | CDY-like, chromodomain Y-like protein; structural | 100.0 | |
| 1mj3_A | 260 | Enoyl-COA hydratase, mitochondrial; homohexamer, l | 100.0 | |
| 1hzd_A | 272 | AUH, AU-binding protein/enoyl-COA hydratase; RNA-b | 100.0 | |
| 2f6q_A | 280 | Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis | 100.0 | |
| 3pe8_A | 256 | Enoyl-COA hydratase; emerald biostructures, struct | 100.0 | |
| 1uiy_A | 253 | Enoyl-COA hydratase; lyase, beta-oxidation, croton | 100.0 | |
| 3isa_A | 254 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3bpt_A | 363 | 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet | 100.0 | |
| 3rrv_A | 276 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 2a7k_A | 250 | CARB; crotonase, antibiotic, beta-lactam, biosynth | 100.0 | |
| 3h0u_A | 289 | Putative enoyl-COA hydratase; structural genomics, | 100.0 | |
| 1sg4_A | 260 | 3,2-trans-enoyl-COA isomerase, mitochondrial; crot | 100.0 | |
| 3ju1_A | 407 | Enoyl-COA hydratase/isomerase family protein; alph | 100.0 | |
| 4di1_A | 277 | Enoyl-COA hydratase ECHA17; structural genomics, s | 100.0 | |
| 3lao_A | 258 | Enoyl-COA hydratase/isomerase; alpha-beta sandwich | 100.0 | |
| 3l3s_A | 263 | Enoyl-COA hydratase/isomerase family protein; crot | 100.0 | |
| 3njd_A | 333 | Enoyl-COA hydratase; ssgcid, mycobacerium smegmati | 100.0 | |
| 1pjh_A | 280 | Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral | 100.0 | |
| 2q35_A | 243 | CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} | 100.0 | |
| 2j5g_A | 263 | ALR4455 protein; enzyme evolution, C-C bond hydrol | 100.0 | |
| 3t3w_A | 279 | Enoyl-COA hydratase; ssgcid, structural genomics, | 100.0 | |
| 2np9_A | 440 | DPGC; protein inhibitor complex, oxidoreductase; H | 100.0 | |
| 3m6n_A | 305 | RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X | 100.0 | |
| 1szo_A | 257 | 6-oxocamphor hydrolase; enzyme-product complex; HE | 100.0 | |
| 3r6h_A | 233 | Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m | 100.0 | |
| 3ot6_A | 232 | Enoyl-COA hydratase/isomerase family protein; stru | 100.0 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 100.0 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 100.0 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 100.0 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 100.0 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 99.9 | |
| 3rst_A | 240 | Signal peptide peptidase SPPA; alpha/beta protein | 99.87 | |
| 3viv_A | 230 | 441AA long hypothetical NFED protein; protein-pept | 99.85 | |
| 2f9y_B | 304 | Acetyl-coenzyme A carboxylase carboxyl transferas | 99.69 | |
| 1y7o_A | 218 | ATP-dependent CLP protease proteolytic subunit; hy | 99.69 | |
| 2f9i_A | 327 | Acetyl-coenzyme A carboxylase carboxyl transferase | 99.59 | |
| 2f9y_A | 339 | Acetyl-COA carboxylase, carboxyltransferase alpha; | 99.56 | |
| 2cby_A | 208 | ATP-dependent CLP protease proteolytic subunit 1; | 99.2 | |
| 3qwd_A | 203 | ATP-dependent CLP protease proteolytic subunit; ca | 98.89 | |
| 1yg6_A | 193 | ATP-dependent CLP protease proteolytic subunit; en | 98.85 | |
| 2f6i_A | 215 | ATP-dependent CLP protease, putative; structural g | 98.84 | |
| 1tg6_A | 277 | Putative ATP-dependent CLP protease proteolytic S; | 98.76 | |
| 3p2l_A | 201 | ATP-dependent CLP protease proteolytic subunit; st | 98.66 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 98.64 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 98.36 | |
| 4gm2_A | 205 | ATP-dependent CLP protease proteolytic subunit; st | 98.34 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 98.26 | |
| 2f9i_B | 285 | Acetyl-coenzyme A carboxylase carboxyl transferase | 98.01 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 97.98 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 97.78 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 97.69 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 97.61 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 97.58 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 97.57 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 97.43 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 97.23 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 97.14 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 97.07 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 96.94 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 96.93 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 96.75 | |
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 96.26 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 96.25 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 96.18 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 96.06 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 95.7 | |
| 2x24_A | 793 | Acetyl-COA carboxylase; fatty acid biosynthesis, l | 95.66 | |
| 2x24_A | 793 | Acetyl-COA carboxylase; fatty acid biosynthesis, l | 90.89 | |
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 81.37 |
| >3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-65 Score=468.59 Aligned_cols=252 Identities=29% Similarity=0.366 Sum_probs=231.0
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhh
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 150 (331)
|++|+ +++|++||||||+++|+||.+|+.+|.++|++++.|++||+|||||.| ++||+|+|++++....... ...
T Consensus 2 vl~E~--~dgVa~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~--~~~ 76 (254)
T 3hrx_A 2 VLKER--QDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAG-RAFSAGQDLTEFGDRKPDY--EAH 76 (254)
T ss_dssp EEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGTTTSCCCH--HHH
T ss_pred eEEEE--ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCC-CCcccCccHHHhcccchhh--HHH
Confidence 68898 899999999999999999999999999999999999999999999999 6999999999876432221 111
Q ss_pred hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHH
Q 020093 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW 230 (331)
Q Consensus 151 ~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ 230 (331)
...++.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.++|++|+
T Consensus 77 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~ll 156 (254)
T 3hrx_A 77 LRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELL 156 (254)
T ss_dssp THHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHh
Confidence 22456788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCChhH
Q 020093 231 FLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTEEG 309 (331)
Q Consensus 231 ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~ 309 (331)
+||++|+|+||+++||||+|||++++.+++.+++++|+..||.+++.+|++++...+. ..+..+.+...+..++.++|+
T Consensus 157 ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~s~d~ 236 (254)
T 3hrx_A 157 LLSPRLSAEEALALGLVHRVVPAEKLMEEALSLAKELAQGPTRAYALTKKLLLETYRLSLTEALALEAVLQGQAGQTQDH 236 (254)
T ss_dssp HHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHH
T ss_pred hcCcccCHHHHHHCCCeEEecCcHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999999999999999999999999999999999999987753 344456677778888999999
Q ss_pred HHHHHHHhcCCCCCCCCC
Q 020093 310 SEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 310 ~egi~aflekr~p~f~~~ 327 (331)
+||++||+|||+|+|+|+
T Consensus 237 ~Eg~~AF~eKR~P~f~Gr 254 (254)
T 3hrx_A 237 EEGVRAFREKRPPRFQGR 254 (254)
T ss_dssp HHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHhCCCCCCCCCC
Confidence 999999999999999986
|
| >4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-65 Score=469.69 Aligned_cols=260 Identities=27% Similarity=0.400 Sum_probs=226.9
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~ 144 (331)
..+++.|++++ ++||++||||||+++|+||.+|+.+|.++|++++.|++||+|||||.| ++||+|+|++++......
T Consensus 11 GsM~e~il~~~--~~gVa~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G-~~FcaG~Dl~~~~~~~~~ 87 (274)
T 4fzw_C 11 GSMMEFILSHV--EKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAG-RGFCAGQDLNDRNVDPTG 87 (274)
T ss_dssp -----CEEEEE--ETTEEEEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCBCCC--------
T ss_pred ccccccEEEEE--ECCEEEEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceeCCcChHhhhccccc
Confidence 45667899999 999999999999999999999999999999999999999999999999 699999999986532211
Q ss_pred ch-h--hhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhh
Q 020093 145 DY-E--NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221 (331)
Q Consensus 145 ~~-~--~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v 221 (331)
.. + ......+..++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++
T Consensus 88 ~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v 167 (274)
T 4fzw_C 88 PAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVA 167 (274)
T ss_dssp -CCCHHHHHHHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHh
Confidence 11 1 11122345788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCc-hhHHHHHHHHH
Q 020093 222 GPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH-AGLQTLGGDAT 300 (331)
Q Consensus 222 G~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~-~~~~~~~~~~~ 300 (331)
|..+|++|++||+.|+|+||+++||||+|||+++|.+++.++|++|+..||.+++.+|++++...... ....+.|...+
T Consensus 168 G~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~ 247 (274)
T 4fzw_C 168 GRARAMGLALLGNQLSAEQAHEWGMIWQVVDDETLADTAQQLARHLATQPTFGLGLIKQAINSAETNTLDTQLDLERDYQ 247 (274)
T ss_dssp CHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCcCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999876543 34456677778
Q ss_pred HHHhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 301 LIFYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 301 ~~~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
..++.++|++||++||+|||+|+|+|+
T Consensus 248 ~~~~~s~d~~Egv~AF~eKR~P~f~Gr 274 (274)
T 4fzw_C 248 RLAGRSADYREGVSAFLAKRSPQFTGK 274 (274)
T ss_dssp HHHTTSHHHHHHHHHHHC-CCCCCCCC
T ss_pred HHHhcCHHHHHHHHHHhCCCCCCCCCC
Confidence 888999999999999999999999985
|
| >4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-65 Score=466.76 Aligned_cols=255 Identities=27% Similarity=0.432 Sum_probs=232.2
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
.+.+|++++ +++|++||||||+++|+||.+|+.+|.++|++++.|++|++|||||.| ++||+|+||+++.....
T Consensus 3 ~ms~l~ve~--~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~--- 76 (258)
T 4fzw_A 3 SMSELIVSR--QQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNA-RFFAAGADLNEMAEKDL--- 76 (258)
T ss_dssp --CEEEEEE--ETTEEEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCS-SEEEECBCHHHHHTCCH---
T ss_pred CCCcEEEEE--ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCC-CceeCCCchhhhccchh---
Confidence 456799999 999999999999999999999999999999999999999999999999 69999999998764321
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
..........++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 77 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A 156 (258)
T 4fzw_A 77 AATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLA 156 (258)
T ss_dssp HHHHTCSHHHHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred hhHHHhHHHHHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHHH
Confidence 11112234578889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYG 305 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~ 305 (331)
++|++||+.++|+||+++||||+|||++++.+++.+++++|+..||.+++.+|++++...+. .....+.|...+..++.
T Consensus 157 ~~llltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~ 236 (258)
T 4fzw_A 157 SKMVLSGESITAQQAQQAGLVSDVFPSDLTLEYALQLASKMARHSPLALQAAKQALRQSQEVALQAGLAQERQLFTLLAA 236 (258)
T ss_dssp HHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCcCcHHHHHHCCCeeEEeCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999987653 34445667777888999
Q ss_pred ChhHHHHHHHHhcCCCCCCCCC
Q 020093 306 TEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 306 s~d~~egi~aflekr~p~f~~~ 327 (331)
++|++||++||+|||+|+|+|+
T Consensus 237 s~d~~Eg~~AF~eKR~P~f~Gr 258 (258)
T 4fzw_A 237 TEDRHEGISAFLQKRTPDFKGR 258 (258)
T ss_dssp SHHHHHHHHHHHTTSCCCCCCC
T ss_pred CHHHHHHHHHHhCCCCCCCCCC
Confidence 9999999999999999999986
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-64 Score=464.08 Aligned_cols=265 Identities=65% Similarity=1.086 Sum_probs=231.8
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEe-----CCCCceeccccccchh
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG-----KGTEAFCSGGDQALRT 139 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g-----~g~~~FcaG~Dl~~~~ 139 (331)
...|+.|++++ +++|++||||||+++|+||.+|+.+|.++|+.++.|++||+||||| .|+++||+|+|++++.
T Consensus 6 ~~~~~~v~~~~--~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~ 83 (275)
T 4eml_A 6 AKHYDDILYYK--AGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRG 83 (275)
T ss_dssp EEECSSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC---
T ss_pred ccCCceEEEEE--ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhh
Confidence 34567899999 9999999999999999999999999999999999999999999999 8867999999999875
Q ss_pred cCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHH
Q 020093 140 RDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR 219 (331)
Q Consensus 140 ~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r 219 (331)
..............+..++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r 163 (275)
T 4eml_A 84 EGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLAR 163 (275)
T ss_dssp -----------CCCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHH
Confidence 42111111111223567888999999999999999999999999999999999999999999999999998888999999
Q ss_pred hhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHH
Q 020093 220 LVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDA 299 (331)
Q Consensus 220 ~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~ 299 (331)
++|..+|++|+++|+.++|+||+++||||+|||++++.+++.++|++|+..||.+++.+|++++...+......+.+.+.
T Consensus 164 ~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~ 243 (275)
T 4eml_A 164 IVGQKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILSKSPLAIRCLKAAFNADCDGQAGLQELAGNA 243 (275)
T ss_dssp HHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHhCCCcCHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998754333333455566
Q ss_pred HHHHhCChhHHHHHHHHhcCCCCCCCCCCCCC
Q 020093 300 TLIFYGTEEGSEGKTAFVERRRPDFLKFPRRP 331 (331)
Q Consensus 300 ~~~~~~s~d~~egi~aflekr~p~f~~~~~~~ 331 (331)
+..++.++|++||++||+|||+|+|+++|+.|
T Consensus 244 ~~~~~~s~d~~eg~~AF~ekR~p~f~~~~~~~ 275 (275)
T 4eml_A 244 TLLYYMTEEGSEGKQAFLEKRPPDFSQYPWLP 275 (275)
T ss_dssp HHHHHTSHHHHHHHHHHHTTSCCCCTTCCCCC
T ss_pred HHHHhcCHHHHHHHHHHHcCCCCCCCCCCCCC
Confidence 67788999999999999999999999999876
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-64 Score=475.30 Aligned_cols=278 Identities=49% Similarity=0.840 Sum_probs=206.4
Q ss_pred CCccchhhhcccCCCCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCC---
Q 020093 51 PSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE--- 127 (331)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~--- 127 (331)
...+..|..... ..+|++|+|++.++++|++||||||+++|+||.+|+.+|.++|+.++.|++||+|||||.|++
T Consensus 39 ~~~p~~w~~~~~--~~~~~~i~~~~~~~~gVa~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~ 116 (334)
T 3t8b_A 39 PFDAKAWRLVDG--FDDLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKD 116 (334)
T ss_dssp SCCGGGEEECTT--CTTCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTT
T ss_pred cCCccccccccc--cCCCceEEEEEeccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCC
Confidence 345577884322 345889999983349999999999999999999999999999999999999999999999965
Q ss_pred ---ceeccccccchhcCCCc--c------hhh--hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEe-
Q 020093 128 ---AFCSGGDQALRTRDGYA--D------YEN--FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA- 193 (331)
Q Consensus 128 ---~FcaG~Dl~~~~~~~~~--~------~~~--~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~- 193 (331)
+||+|+|++++...... . ... .....+..++..|.++||||||+|||+|+|||++|+++||+|||+
T Consensus 117 ~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~ 196 (334)
T 3t8b_A 117 GGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASR 196 (334)
T ss_dssp CCCEEECCSCTTTTC----------------------CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEET
T ss_pred CCCcccCCCCHHHhhcccccccccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeC
Confidence 89999999976432110 0 000 012235578889999999999999999999999999999999999
Q ss_pred CCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHH
Q 020093 194 DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPT 273 (331)
Q Consensus 194 ~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~ 273 (331)
++++|++||+++|++|++|++++|+|++|.++|++|+++|+.|+|+||+++||||+|||+++|++++.++|++|+..||.
T Consensus 197 ~~A~f~~pe~~lGl~p~~gg~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~ia~~~p~ 276 (334)
T 3t8b_A 197 EYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQ 276 (334)
T ss_dssp TTCEEECCCTTCSSSSCCSCHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHH
T ss_pred CCcEEECcccccCCCCcccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccccCchhHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCCCCCCCC
Q 020093 274 AIRVLKSALNAVDDGHAGLQTLGGDATLIFYGTEEGSEGKTAFVERRRPDFLKFPRR 330 (331)
Q Consensus 274 a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~s~d~~egi~aflekr~p~f~~~~~~ 330 (331)
+++.+|++++...+........+.+.+..++.++|++||++||+|||+|+|+++|+.
T Consensus 277 a~~~~K~~l~~~~~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AFleKR~P~f~~~~~~ 333 (334)
T 3t8b_A 277 AQRMLKFAFNLLDDGLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDWSPFPRY 333 (334)
T ss_dssp HHHHHHHHHHHTCCCC-----------------------------------------
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 999999999987654443344555666778899999999999999999999999863
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-63 Score=462.12 Aligned_cols=265 Identities=67% Similarity=1.079 Sum_probs=231.5
Q ss_pred CCCcccEEEEEeeC-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC
Q 020093 65 GTEFTDIIYEKAVG-EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143 (331)
Q Consensus 65 ~~~~~~v~~~~~~~-~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~ 143 (331)
...|++|++++ + ++|++||||||+++|+||.+|+.+|.++|++++.|++||+|||||.|+++||+|+|++++.....
T Consensus 23 ~~~~~~v~~~~--~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~ 100 (289)
T 3t89_A 23 SEGFEDIRYEK--STDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGG 100 (289)
T ss_dssp CTTCSSEEEEE--ETTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC-------
T ss_pred CCCCCeEEEEE--ecCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhcccc
Confidence 45678899999 7 99999999999999999999999999999999999999999999999669999999998743211
Q ss_pred -cchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhC
Q 020093 144 -ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVG 222 (331)
Q Consensus 144 -~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG 222 (331)
..........+..++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|+|++|
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG 180 (289)
T 3t89_A 101 YKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVG 180 (289)
T ss_dssp ---------CTHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHC
T ss_pred chhhhHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcC
Confidence 1111111223567888999999999999999999999999999999999999999999999998888888999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHH
Q 020093 223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLI 302 (331)
Q Consensus 223 ~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~ 302 (331)
..+|++|+++|+.++|+||+++||||+|||++++.+++.++|++|+..||.+++.+|++++...+......+.+.+.+..
T Consensus 181 ~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~e~~~~~~ 260 (289)
T 3t89_A 181 QKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQELAGNATML 260 (289)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998754323333455566677
Q ss_pred HhCChhHHHHHHHHhcCCCCCCCCCCCCC
Q 020093 303 FYGTEEGSEGKTAFVERRRPDFLKFPRRP 331 (331)
Q Consensus 303 ~~~s~d~~egi~aflekr~p~f~~~~~~~ 331 (331)
++.++|++||++||+|||+|+|+++++.|
T Consensus 261 ~~~s~d~~Eg~~AF~ekR~P~f~~~~~~~ 289 (289)
T 3t89_A 261 FYMTEEGQEGRNAFNQKRQPDFSKFKRNP 289 (289)
T ss_dssp HTTSSTTTHHHHHHHTTSCCCCTTSCCCC
T ss_pred HhcCHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 88999999999999999999999998876
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-62 Score=451.81 Aligned_cols=260 Identities=29% Similarity=0.437 Sum_probs=233.3
Q ss_pred CCCcccEEEE-EeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC
Q 020093 65 GTEFTDIIYE-KAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143 (331)
Q Consensus 65 ~~~~~~v~~~-~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~ 143 (331)
+.+|++|.++ . +++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||.|+++||+|+|++++.....
T Consensus 4 mm~~~~v~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~ 81 (265)
T 3kqf_A 4 MLQLQNISVDYA--TPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNE 81 (265)
T ss_dssp ---CCSEEEECC--STTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCH
T ss_pred cccCCeEEEEEe--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccCH
Confidence 4567889999 8 899999999999999999999999999999999999999999999999779999999998764311
Q ss_pred cchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCH
Q 020093 144 ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP 223 (331)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 223 (331)
. .........+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus 82 ~-~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 160 (265)
T 3kqf_A 82 E-QVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGV 160 (265)
T ss_dssp H-HHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCH
T ss_pred H-HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCH
Confidence 1 111112235678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHH
Q 020093 224 KKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLI 302 (331)
Q Consensus 224 ~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~ 302 (331)
.+|++|+++|+.++|+||+++||||+|||++++.+++.++|++|+..||.+++.+|++++...+. .....+.|...+..
T Consensus 161 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~ 240 (265)
T 3kqf_A 161 GRAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASNGPIAVRLAKEAISNGIQVDLHTGLQMEKQAYEG 240 (265)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987653 33445667777888
Q ss_pred HhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 303 FYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 303 ~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
++.++|++||+++|+|||+|+|+++
T Consensus 241 ~~~s~d~~eg~~af~ekr~p~f~g~ 265 (265)
T 3kqf_A 241 VIHTKDRLEGLQAFKEKRTPMYKGE 265 (265)
T ss_dssp HHTCHHHHHHHHHHHTTSCCCCCCC
T ss_pred HhCCHHHHHHHHHHHcCCCCCCCCC
Confidence 8999999999999999999999874
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-62 Score=447.83 Aligned_cols=257 Identities=26% Similarity=0.340 Sum_probs=230.2
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
++++|.+++ +++|++||||||++ |+||.+|+.+|.++|+.++.|+++|+|||||.| ++||+|+|++++........
T Consensus 4 m~~~v~~~~--~~~v~~itlnrp~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~ 79 (261)
T 3pea_A 4 MLKFLSVRV--EDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEG-RFFSAGADIKEFTSVTEAKQ 79 (261)
T ss_dssp CCSSEEEEE--ETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGSSTTCCHHH
T ss_pred cccceEEEE--ECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceeCCcCHHHHhhcCchhH
Confidence 467899999 99999999999999 999999999999999999999999999999999 69999999998754322111
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
........+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 159 (261)
T 3pea_A 80 ATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKA 159 (261)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHH
Confidence 11111123467888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYG 305 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~ 305 (331)
++|+++|+.++|+||+++||||+|+|++++.+++.++|++|+..||.+++.+|++++...+. .....+.|...+..++.
T Consensus 160 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~ 239 (261)
T 3pea_A 160 CEMMLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGKSPATARAVLELLQTTKSSHYYEGVQREAQIFGEVFT 239 (261)
T ss_dssp HHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999987642 23445666777888889
Q ss_pred ChhHHHHHHHHhcCCCCCCCCC
Q 020093 306 TEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 306 s~d~~egi~aflekr~p~f~~~ 327 (331)
++|++||+++|+|||+|+|+++
T Consensus 240 s~d~~eg~~af~ekr~P~f~g~ 261 (261)
T 3pea_A 240 SEDGREGVAAFLEKRKPSFSGR 261 (261)
T ss_dssp SHHHHHHHHHHHTTSCCCCCC-
T ss_pred CHHHHHHHHHHHcCCCCCCCCC
Confidence 9999999999999999999874
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-62 Score=448.66 Aligned_cols=258 Identities=28% Similarity=0.427 Sum_probs=227.6
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
|++|.+++ +++|++||||||+++|+||.+|+.+|.++|++++.|++||+|||||.| ++||+|+|++++.........
T Consensus 3 ~~~v~~~~--~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (268)
T 3i47_A 3 LSDLLYEI--QDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANG-KHFSAGADLTWMQSMANFTEE 79 (268)
T ss_dssp CCSEEEEE--ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECS-SCSBCSBCHHHHHHHHTCCHH
T ss_pred CCEEEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCeeCCCChhhhhccccccHH
Confidence 56799999 999999999999999999999999999999999999999999999999 699999999987532111111
Q ss_pred hh--hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHH
Q 020093 148 NF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (331)
Q Consensus 148 ~~--~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 225 (331)
.. ....+..++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|..+
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~ 158 (268)
T 3i47_A 80 ENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRAIGERA 158 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHH-HHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHH-HHHHHhCHHH
Confidence 11 11234578889999999999999999999999999999999999999999999999999998877 8999999999
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCc-hh-HHHHHHHHHHHH
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH-AG-LQTLGGDATLIF 303 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~-~~-~~~~~~~~~~~~ 303 (331)
|++|+++|+.|+|+||+++||||+|||++++.+++.++|++|+..||.+++.+|++++...+.. .. ..+.+...+..+
T Consensus 159 A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~~e~~~~~~~ 238 (268)
T 3i47_A 159 AKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISNNAPEAVKNSKQLAQYVANKKIDEELVRYTASLIAHK 238 (268)
T ss_dssp HHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876433 33 345666677788
Q ss_pred hCChhHHHHHHHHhcCCCCCCCCCCC
Q 020093 304 YGTEEGSEGKTAFVERRRPDFLKFPR 329 (331)
Q Consensus 304 ~~s~d~~egi~aflekr~p~f~~~~~ 329 (331)
+.++|++||+++|+|||+|+|++.|.
T Consensus 239 ~~s~d~~eg~~AF~ekR~p~f~~~~~ 264 (268)
T 3i47_A 239 RVSDEGQEGLKAFLNKEIPNWNEGHH 264 (268)
T ss_dssp HHSHHHHHHHHHHHHTCCCTTC----
T ss_pred hcCHHHHHHHHHHHcCCCCCCCCCCC
Confidence 89999999999999999999999864
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-62 Score=448.02 Aligned_cols=256 Identities=24% Similarity=0.310 Sum_probs=220.2
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchh---cCCC
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRT---RDGY 143 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~---~~~~ 143 (331)
.++.|.+++ +++|++||||||+++|+||.+|+.+|.++|++++.|+++|+|||||.| ++||+|+|++++. ....
T Consensus 3 ~~~~v~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~ 79 (266)
T 3fdu_A 3 LHPHLNANL--EGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAE-HDFTAGNDMKDFMGFVQNPN 79 (266)
T ss_dssp CCTTEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCBCHHHHHHHHHSCC
T ss_pred CCCeEEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCeECCcCHHHHhhhccccc
Confidence 456799999 999999999999999999999999999999999999999999999999 6999999999875 3322
Q ss_pred cchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCH
Q 020093 144 ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP 223 (331)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 223 (331)
... ........++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus 80 ~~~--~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 157 (266)
T 3fdu_A 80 AGP--AGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGY 157 (266)
T ss_dssp CSC--GGGSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCH
T ss_pred hhh--HHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhCH
Confidence 111 112235678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHH
Q 020093 224 KKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIF 303 (331)
Q Consensus 224 ~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~ 303 (331)
.+|++|+++|+.++|+||+++||||+|+| ++.+++.++|++|+..||.+++.+|++++..........+.|...+..+
T Consensus 158 ~~A~~l~ltg~~i~A~eA~~~GLv~~vv~--~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~l~~~l~~e~~~~~~~ 235 (266)
T 3fdu_A 158 HKAAELLFTAKKFNAETALQAGLVNEIVE--DAYATAQATAQHLTALPLASLKQTKALMKHDLDQIIECIDHEAEIFMQR 235 (266)
T ss_dssp HHHHHHHHHCCEECHHHHHHTTSCSEECS--CHHHHHHHHHHHHHTSCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 8999999999999999999999999999976433334445666777888
Q ss_pred hCChhHHHHHHHHhcCCCCCCCCCCC
Q 020093 304 YGTEEGSEGKTAFVERRRPDFLKFPR 329 (331)
Q Consensus 304 ~~s~d~~egi~aflekr~p~f~~~~~ 329 (331)
+.++|++||+++|+|||+|+|+..|.
T Consensus 236 ~~s~d~~eg~~aF~ekR~p~~~~~~~ 261 (266)
T 3fdu_A 236 VQSPEMLEAVQAFMQKRQPDFSQEGH 261 (266)
T ss_dssp HTCHHHHHHHHHHC------------
T ss_pred hCCHHHHHHHHHHHcCCCCCCCCCCc
Confidence 99999999999999999999998865
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-61 Score=448.60 Aligned_cols=261 Identities=25% Similarity=0.340 Sum_probs=233.9
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~ 144 (331)
.++|+.|.+++ +++|++||||||+++|+||.+|+.+|.+++++++.|++||+|||||.| ++||+|+|++++......
T Consensus 13 ~~~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~ 89 (279)
T 3g64_A 13 TPEWRHLRVEI--TDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEG-RGFCSGGDVDEIIGATLS 89 (279)
T ss_dssp CSCCSSEEEEE--ETTEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECS-SCSBCCBCTTTTHHHHTT
T ss_pred CCCCCeEEEEE--ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CceecCcCHHHHhhcccc
Confidence 45677899999 899999999999999999999999999999999999999999999999 699999999987532111
Q ss_pred c-hhhh--hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCC-CCchHHHHHHHh
Q 020093 145 D-YENF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSF-DAGYGSSIMSRL 220 (331)
Q Consensus 145 ~-~~~~--~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~-p~~g~~~~L~r~ 220 (331)
. .... ....++.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ |++|++++|+|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~ 169 (279)
T 3g64_A 90 MDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRV 169 (279)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHH
Confidence 1 1111 11234578889999999999999999999999999999999999999999999999999 999999999999
Q ss_pred hCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHH
Q 020093 221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDA 299 (331)
Q Consensus 221 vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~ 299 (331)
+|..+|++|+++|+.++|+||+++||||+|||++++.+++.++|++|+..||.+++.+|+.++...+. .....+.|...
T Consensus 170 vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~ 249 (279)
T 3g64_A 170 VGLGHATRLLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRLADGPALAHAQTKALLTAELDMPLAAAVELDAST 249 (279)
T ss_dssp HCHHHHHHHHHHCCCEEHHHHHHHTCCSEECCTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred hCHHHHHHHHHcCCCcCHHHHHHCCCCCEecCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987653 34445667777
Q ss_pred HHHHhCChhHHHHHHHHhcCCCCCCCCCC
Q 020093 300 TLIFYGTEEGSEGKTAFVERRRPDFLKFP 328 (331)
Q Consensus 300 ~~~~~~s~d~~egi~aflekr~p~f~~~~ 328 (331)
+..++.++|++||+++|+|||+|+|++++
T Consensus 250 ~~~~~~s~d~~eg~~af~ekr~p~f~g~~ 278 (279)
T 3g64_A 250 QALLMTGEDYAEFHAAFTEKRPPKWQGRG 278 (279)
T ss_dssp HHHHTTSHHHHHHHHHHHTTSCCCCCCC-
T ss_pred HHHHhcCHHHHHHHHHHhcCCCCCCCCCC
Confidence 88889999999999999999999999874
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-62 Score=448.62 Aligned_cols=260 Identities=26% Similarity=0.346 Sum_probs=226.3
Q ss_pred CCCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC
Q 020093 64 SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143 (331)
Q Consensus 64 ~~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~ 143 (331)
++.++++|.+++ +++|++||||||+++|+||.+|+.+|.++|++++.|++||+|||||.|+++||+|+|++++.....
T Consensus 4 ~m~~~~~v~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~ 81 (267)
T 3r9t_A 4 SMTDAPGALAER--RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARREN 81 (267)
T ss_dssp ----CCSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCC
T ss_pred CCCCCCcEEEEE--ECCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccc
Confidence 466778899999 999999999999999999999999999999999999999999999999779999999998754322
Q ss_pred cchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCH
Q 020093 144 ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP 223 (331)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 223 (331)
.............+ .+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus 82 ~~~~~~~~~~~~~~--~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 159 (267)
T 3r9t_A 82 LYHPDHPEWGFAGY--VRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPR 159 (267)
T ss_dssp CSCTTCGGGCGGGT--TTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCH
T ss_pred hhhHHHHhHHHHHH--HHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCH
Confidence 11111001000111 2238999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHH---HHcccc-CchhHHHHHHHH
Q 020093 224 KKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSA---LNAVDD-GHAGLQTLGGDA 299 (331)
Q Consensus 224 ~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~---l~~~~~-~~~~~~~~~~~~ 299 (331)
.+|++|+++|+.++|+||+++||||+|||++++.+++.++|++|+..||.+++.+|++ ++...+ ......+.|...
T Consensus 160 ~~A~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~~~~l~~~~~~~l~~~l~~e~~~ 239 (267)
T 3r9t_A 160 KVAMRLLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAITVNAPLSVQASKRIAYGVDDGVVVGDEPGWDRTMRE 239 (267)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSSSEEECTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHTTEETTEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCccEEcChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 877654 233445667777
Q ss_pred HHHHhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 300 TLIFYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 300 ~~~~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
+..++.++|++||++||+|||+|+|+++
T Consensus 240 ~~~~~~s~d~~eg~~AF~ekR~P~f~g~ 267 (267)
T 3r9t_A 240 MRALLKSEDAKEGPRAFAEKREPVWQAR 267 (267)
T ss_dssp HHHHTTSSHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence 8888999999999999999999999874
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-61 Score=446.15 Aligned_cols=257 Identities=35% Similarity=0.486 Sum_probs=231.8
Q ss_pred CCCcccEEEEEeeCCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC
Q 020093 65 GTEFTDIIYEKAVGEG-IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~-v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~ 143 (331)
+..++.|.+++ +++ |++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++.....
T Consensus 5 mm~~~~i~~~~--~~~gv~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~ 81 (263)
T 3moy_A 5 MTTYTTIATSR--PVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSE-RAFAAGADIAEMVTLTP 81 (263)
T ss_dssp -CCCSSEEEEC--CSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SEEEESBCHHHHTTCCH
T ss_pred cCCCCeEEEEE--eCCeEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCeeCCcChHHHhccCc
Confidence 44567899998 777 999999999999999999999999999999999999999999987 79999999998754321
Q ss_pred cchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCH
Q 020093 144 ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP 223 (331)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 223 (331)
.. .....+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus 82 --~~-~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 158 (263)
T 3moy_A 82 --HQ-ARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGK 158 (263)
T ss_dssp --HH-HHHTTTTHHHHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCH
T ss_pred --hh-HHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCH
Confidence 11 112234567889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHH
Q 020093 224 KKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLI 302 (331)
Q Consensus 224 ~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~ 302 (331)
.+|++|+++|+.++|+||+++||||+|+|++++.+++.++|++|+..+|.+++.+|++++...+. .....+.|...+..
T Consensus 159 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~ 238 (263)
T 3moy_A 159 AKAMDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIARMSRPAGRAVKDAINEAFERPLSAGMRYERDAFYA 238 (263)
T ss_dssp HHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCccEecCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987653 33445667777888
Q ss_pred HhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 303 FYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 303 ~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
++.++|++||+++|+|||+|+|+++
T Consensus 239 ~~~s~d~~eg~~AF~ekR~p~f~g~ 263 (263)
T 3moy_A 239 MFDTHDQTEGMTAFLEKRTPEFTDR 263 (263)
T ss_dssp HTTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred HhCCHHHHHHHHHHHhCCCCCCCCC
Confidence 9999999999999999999999874
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-61 Score=446.44 Aligned_cols=263 Identities=63% Similarity=1.010 Sum_probs=229.1
Q ss_pred CCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc
Q 020093 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~ 145 (331)
..|++|.+++ +++|++||||||+++|+||.+|+.+|.++|++++.|++|++|||||.|+++||+|+|++++.......
T Consensus 10 ~~~~~i~~~~--~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~ 87 (273)
T 2uzf_A 10 REYDEIKYEF--YEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVG 87 (273)
T ss_dssp BCCSSEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC--------C
T ss_pred CCCceEEEEE--ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccccch
Confidence 4567799999 89999999999999999999999999999999999999999999999933999999999875311110
Q ss_pred hhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHH
Q 020093 146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (331)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 225 (331)
........++.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.++
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 167 (273)
T 2uzf_A 88 EDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKK 167 (273)
T ss_dssp CSSSCCCTHHHHHHHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHHH
T ss_pred hhhHHHhhHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHHH
Confidence 01111112457788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHH-HHHHHHh
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGG-DATLIFY 304 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~-~~~~~~~ 304 (331)
|++|+++|+.++|+||+++||||+|+|++++.+++.++|++|+..+|.+++.+|++++.. .......+.+. ..+..++
T Consensus 168 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~-~~~~~~l~~e~~~~~~~~~ 246 (273)
T 2uzf_A 168 AREIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKHSPTALRFLKAAMNAD-TDGLAGLQQMAGDATLLYY 246 (273)
T ss_dssp HHHHHHTCCCEEHHHHHHHTSSSEEECGGGSHHHHHHHHHHHTTSCHHHHHHHHHHHHHH-HSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHcCCCccccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999832 22233344555 6677788
Q ss_pred CChhHHHHHHHHhcCCCCCCCCCCCCC
Q 020093 305 GTEEGSEGKTAFVERRRPDFLKFPRRP 331 (331)
Q Consensus 305 ~s~d~~egi~aflekr~p~f~~~~~~~ 331 (331)
.++|++||+++|+|||+|+|+++++.|
T Consensus 247 ~s~d~~egi~af~ekr~p~f~~~~~~~ 273 (273)
T 2uzf_A 247 TTDEAKEGRDAFKEKRDPDFDQFPKFP 273 (273)
T ss_dssp TSHHHHHHHHHHHTTSCCCCSSSCCCC
T ss_pred cChHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 999999999999999999999998876
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-61 Score=441.28 Aligned_cols=252 Identities=30% Similarity=0.412 Sum_probs=229.1
Q ss_pred CCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc
Q 020093 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~ 145 (331)
..|+.|.+++ +++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++..
T Consensus 3 ~~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~----- 74 (255)
T 3p5m_A 3 GSMNGISVEH--DGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAG-RAFCSGGDLTGGDT----- 74 (255)
T ss_dssp CCBTTEEEEE--ETTEEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCEECC---CH-----
T ss_pred CCCceEEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCCCChhhhcc-----
Confidence 3456799999 999999999999999999999999999999999999999999999999 69999999998652
Q ss_pred hhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHH
Q 020093 146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (331)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 225 (331)
. .....++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus 75 ~--~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 152 (255)
T 3p5m_A 75 A--GAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRAR 152 (255)
T ss_dssp H--HHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHH
T ss_pred h--HHHHHHHHHHHHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHH
Confidence 1 11223567888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHh
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFY 304 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~ 304 (331)
|++|+++|+.++|+||+++||||+|+|++++.+++.++|++|+..||.+++.+|++++..... .....+.|...+..++
T Consensus 153 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~ 232 (255)
T 3p5m_A 153 TSRMAMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSVSGGPTLAFGWTKRALAAATLAELEPVQAIEAEGQLALV 232 (255)
T ss_dssp HHHHHHHCCCEEHHHHHHTTSCSEECCTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcCHHHHHHCCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999986643 3444566777788889
Q ss_pred CChhHHHHHHHHhcCCCCCCCCC
Q 020093 305 GTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 305 ~s~d~~egi~aflekr~p~f~~~ 327 (331)
.++|++||+++|+|||+|+|+++
T Consensus 233 ~s~d~~eg~~af~ekr~p~f~g~ 255 (255)
T 3p5m_A 233 ETADFREGARAFRERRTPNFRGH 255 (255)
T ss_dssp TSHHHHHHHHHHHTTSCCCCCCC
T ss_pred CCHHHHHHHHHHHcCCCCCCCCC
Confidence 99999999999999999999874
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-61 Score=447.30 Aligned_cols=259 Identities=27% Similarity=0.340 Sum_probs=225.6
Q ss_pred CCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc
Q 020093 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~ 145 (331)
.+...|.++. +++|++||||||+++|+||.+|+.+|.++|+.++.|++||+|||+|.| ++||+|+|++++.......
T Consensus 21 ~m~~~v~~~~--~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~~~ 97 (290)
T 3sll_A 21 SMSFVLVDRP--RPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAG-KGFCSGADQKSAGPIPHIG 97 (290)
T ss_dssp --CCEEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCC------CCCSSCT
T ss_pred CCCeEEEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCC-CCeeCCcChHHHhcccccc
Confidence 3446788998 999999999999999999999999999999999999999999999999 6999999999875432211
Q ss_pred h------hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCC-chHHHHHH
Q 020093 146 Y------ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDA-GYGSSIMS 218 (331)
Q Consensus 146 ~------~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~g~~~~L~ 218 (331)
. .......++.++.+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+ +|++++|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~ 177 (290)
T 3sll_A 98 GLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLP 177 (290)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHH
Confidence 0 0011223457888999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc-C-chhHHHHH
Q 020093 219 RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD-G-HAGLQTLG 296 (331)
Q Consensus 219 r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~-~~~~~~~~ 296 (331)
|++|..+|++|+++|+.++|+||+++||||+|||++++.+++.++|++|+..||.+++.+|++++...+ . .....+.|
T Consensus 178 r~vG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~l~~~l~~e 257 (290)
T 3sll_A 178 RAIGTSRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGFSRPGIELTKRTIWSGLDAASLESHMHQE 257 (290)
T ss_dssp HHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSCHHHHHHHH
T ss_pred HHhCHHHHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998765 3 34445666
Q ss_pred HHHHHHHh-CChhHHHHHHHHhcCCCCCCCCC
Q 020093 297 GDATLIFY-GTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 297 ~~~~~~~~-~s~d~~egi~aflekr~p~f~~~ 327 (331)
...+..++ .++|++||+++|+|||+|+|+++
T Consensus 258 ~~~~~~~~~~s~d~~eg~~AFlekR~P~f~g~ 289 (290)
T 3sll_A 258 GLGQLYVRLLTDNFEEATAARKEKRPAEFRDK 289 (290)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHTTSCCCCCSC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHcCCCCCCCCC
Confidence 67777788 89999999999999999999986
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-62 Score=449.01 Aligned_cols=258 Identities=27% Similarity=0.389 Sum_probs=229.8
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~ 144 (331)
..+++.|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++......
T Consensus 3 ~~m~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~ 79 (265)
T 3qxz_A 3 GSMVTELHEEI--RDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAP-PAFCSGAQISAAAETFAA 79 (265)
T ss_dssp ---CCEEEEEE--ETTEEEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCBCSTTCTTCCCC
T ss_pred CCccceEEEEE--ECCEEEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CccccCcChHHHhhccch
Confidence 45678899999 999999999999999999999999999999999999999999999999 699999999987543211
Q ss_pred chhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 145 ~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
....... . +.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus 80 ~~~~~~~-~-~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (265)
T 3qxz_A 80 PRNPDFS-A-SPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTA 157 (265)
T ss_dssp CCSSCCC-S-CCSSSCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHH
T ss_pred hHHHHHH-H-HHHHHHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHH
Confidence 1111111 1 3456678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhcc-CHHHHHHHHHHHHcccc-CchhH--HHHHHHHH
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRN-SPTAIRVLKSALNAVDD-GHAGL--QTLGGDAT 300 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~-~~~a~~~~K~~l~~~~~-~~~~~--~~~~~~~~ 300 (331)
+|++|+++|+.++|+||+++||||+|||++++.+++.++|++|+.. ||.+++.+|++++...+ ..... .+.|...+
T Consensus 158 ~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~a~~~~K~~l~~~~~~~l~~~~~l~~e~~~~ 237 (265)
T 3qxz_A 158 VAAELLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIATNVAPESAALTKRLLWDAQMTGMSAAEVAARETADH 237 (265)
T ss_dssp HHHHHHHHCCCBCHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999998654 33344 56677778
Q ss_pred HHHhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 301 LIFYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 301 ~~~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
..++.++|++||+++|+|||+|+|+++
T Consensus 238 ~~~~~s~d~~egi~Af~ekr~P~f~g~ 264 (265)
T 3qxz_A 238 LRLMGSQDAAEGPRAFIDGRPPRWAGQ 264 (265)
T ss_dssp HHHHTSTHHHHHHHHHHHTSCCCCCCC
T ss_pred HHHhCChHHHHHHHHHHcCCCCCCCCC
Confidence 888999999999999999999999985
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-61 Score=442.33 Aligned_cols=257 Identities=27% Similarity=0.365 Sum_probs=223.3
Q ss_pred CCCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC
Q 020093 64 SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143 (331)
Q Consensus 64 ~~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~ 143 (331)
++.++++|.+++ +++|++||||||+++|+||.+|+.+|.++|+.++.|+++|+|||||.| ++||+|+|++ ... .
T Consensus 4 ~m~~~~~v~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~-~~~--~ 77 (265)
T 3rsi_A 4 SMSAARELLVER--DGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAG-SAYCVGGDLS-DGW--M 77 (265)
T ss_dssp -----CCEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSEECC----------
T ss_pred CCCCCCcEEEEE--ECCEEEEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcCCC-ccc--c
Confidence 466678899999 899999999999999999999999999999999999999999999999 6999999998 221 1
Q ss_pred cchhhhhhhhHHH-HHHHH-H--cCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHH
Q 020093 144 ADYENFGRLNVLD-LQVQI-R--RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR 219 (331)
Q Consensus 144 ~~~~~~~~~~~~~-l~~~l-~--~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r 219 (331)
...... ...... ++..+ . ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++
T Consensus 78 ~~~~~~-~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~ 156 (265)
T 3rsi_A 78 VRDGSA-PPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKR 156 (265)
T ss_dssp --------CCCHHHHHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHH
T ss_pred cchHHH-HHHhHHHHHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHH
Confidence 111111 112345 77888 8 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHH
Q 020093 220 LVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGD 298 (331)
Q Consensus 220 ~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~ 298 (331)
++|..+|++|+++|+.++|+||+++||||+|+|++++.+++.++|++|+..||.+++.+|++++...+. .....+.|..
T Consensus 157 ~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~ 236 (265)
T 3rsi_A 157 QIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIVRNGPLAVRNAKEAIVRSGWLAEEDARAIEAR 236 (265)
T ss_dssp HSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhCHHHHHHHHHcCCCCCHHHHHHCCCccEecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987653 3445566777
Q ss_pred HHHHHhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 299 ATLIFYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 299 ~~~~~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
.+..++.++|++||+++|+|||+|+|+++
T Consensus 237 ~~~~~~~s~d~~eg~~af~ekr~p~f~g~ 265 (265)
T 3rsi_A 237 LTRPVITSADAREGLAAFKEKREARFTGR 265 (265)
T ss_dssp HHHHHHTSHHHHHHHHHHHHTSCCCCCCC
T ss_pred HHHHHhcCHHHHHHHHHHHcCCCCCCCCC
Confidence 78888999999999999999999999874
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-61 Score=448.14 Aligned_cols=257 Identities=18% Similarity=0.276 Sum_probs=227.0
Q ss_pred CCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc
Q 020093 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~ 145 (331)
.+++.|.+++ +++|++||||||+++|+||.+|+.+|.++|+++ |+++|+|||||.| ++||+|+|++++......
T Consensus 13 m~~~~v~~~~--~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~--d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~- 86 (275)
T 3hin_A 13 ADPSTLVVDT--VGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIG-DHFSAGLDLSELRERDAT- 86 (275)
T ss_dssp CCGGGEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHTSSC--CTTCCEEEEEESS-SCSBCCBCGGGCCCCCHH-
T ss_pred CCCCeEEEEE--ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHh--CcCceEEEEECCC-CCccCCCCHHHHhccChh-
Confidence 3467899999 999999999999999999999999999999999 5799999999999 699999999987542111
Q ss_pred hhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHH
Q 020093 146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (331)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 225 (331)
........+..++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 166 (275)
T 3hin_A 87 EGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVAR 166 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHH
Confidence 11111223467888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHh
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFY 304 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~ 304 (331)
|++|+++|++++|+||+++||||+|||++++.+++.++|++|+..+|.+++.+|++++...+. .....+.|...+..++
T Consensus 167 A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~ 246 (275)
T 3hin_A 167 MADMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVAQNAPLTNFAVLQALPMIAEANPQTGLLMESLMATVAQ 246 (275)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSCSEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHCCCCCEEeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999986543 3344456666777788
Q ss_pred CChhHHHHHHHHhcCCCCCCCCCC
Q 020093 305 GTEEGSEGKTAFVERRRPDFLKFP 328 (331)
Q Consensus 305 ~s~d~~egi~aflekr~p~f~~~~ 328 (331)
.++|++||+++|+|||+|+|++.|
T Consensus 247 ~s~d~~eg~~AF~ekR~p~f~~~~ 270 (275)
T 3hin_A 247 SDQEAKTRIRAFLDHKTAKVREGH 270 (275)
T ss_dssp HSHHHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHcCCCCCCCCCC
Confidence 999999999999999999999875
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-61 Score=444.37 Aligned_cols=256 Identities=34% Similarity=0.497 Sum_probs=229.6
Q ss_pred CCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc
Q 020093 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~ 145 (331)
..++.|.+++ +++|++||||||+++|+||.+|+.+|.++|+.++.|++||+|||||.| ++||+|+|++++......
T Consensus 22 m~~~~v~~~~--~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~- 97 (278)
T 3h81_A 22 MTYETILVER--DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSA-KAFAAGADIKEMADLTFA- 97 (278)
T ss_dssp -CCSSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCS-SEEECCBCSHHHHTCCHH-
T ss_pred CCCCeEEEEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCeecCcCHHHHhccChh-
Confidence 3467899999 899999999999999999999999999999999999999999999987 799999999988643211
Q ss_pred hhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHH
Q 020093 146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (331)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 225 (331)
..... .....+..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus 98 -~~~~~-~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~ 175 (278)
T 3h81_A 98 -DAFTA-DFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAK 175 (278)
T ss_dssp -HHHHH-TTTGGGHHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred -hHHHH-HHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHH
Confidence 11111 1112267899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHh
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFY 304 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~ 304 (331)
|++|+++|+.++|+||+++||||+|||++++.+++.++|++|+..||.+++.+|++++...+. .....+.|...+..++
T Consensus 176 A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~ 255 (278)
T 3h81_A 176 AMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAARMAKEAVNRAFESSLSEGLLYERRLFHSAF 255 (278)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999987653 3444566777788889
Q ss_pred CChhHHHHHHHHhcCCCCCCCCC
Q 020093 305 GTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 305 ~s~d~~egi~aflekr~p~f~~~ 327 (331)
.++|++||++||+|||+|+|+++
T Consensus 256 ~s~d~~eg~~AF~ekR~P~f~g~ 278 (278)
T 3h81_A 256 ATEDQSEGMAAFIEKRAPQFTHR 278 (278)
T ss_dssp TSHHHHHHHHHHHTTSCCCCCCC
T ss_pred CCHHHHHHHHHHHcCCCCCCCCC
Confidence 99999999999999999999874
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-62 Score=447.68 Aligned_cols=260 Identities=23% Similarity=0.317 Sum_probs=228.1
Q ss_pred CCCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC
Q 020093 64 SGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143 (331)
Q Consensus 64 ~~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~ 143 (331)
++.+|+.|.+++ +++|++||||||+++|+||.+|+.+|.++|++++.|++||+|||||.|+ .||+|+|++++.....
T Consensus 4 ~m~~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~-~F~aG~Dl~~~~~~~~ 80 (265)
T 3swx_A 4 SMSDYETLRIRR--DGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGP-LFTAGLDLASVAAEIQ 80 (265)
T ss_dssp ---CCSSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTT-CSBCCBCHHHHHHHHC
T ss_pred CCCCCceEEEEE--ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCC-CcccCcChHHHhhccc
Confidence 355678899999 9999999999999999999999999999999999999999999999995 7999999998753211
Q ss_pred cchhhhhhhhHHHHHHHH-HcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhC
Q 020093 144 ADYENFGRLNVLDLQVQI-RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVG 222 (331)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l-~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG 222 (331)
...... .....+++..+ .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 81 ~~~~~~-~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 159 (265)
T 3swx_A 81 GGASLT-PEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAG 159 (265)
T ss_dssp --CCCC-CTTCCCTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHC
T ss_pred chhHHH-HHHHHHHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhh
Confidence 000000 01112334567 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHHHH
Q 020093 223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATL 301 (331)
Q Consensus 223 ~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~ 301 (331)
..+|++|+++|+.++|+||+++||||+|+|++++.+++.++|++|+..||.+++.+|++++...+ ......+.|...+.
T Consensus 160 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~ 239 (265)
T 3swx_A 160 WGNAMRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTIARQAPLGVQATLRNARLAVREGDAAAEEQLVPTVR 239 (265)
T ss_dssp HHHHHHHHTTCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998654 33344566777788
Q ss_pred HHhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 302 IFYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 302 ~~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
.++.++|++||+++|+|||+|+|+++
T Consensus 240 ~~~~s~d~~eg~~af~ekr~p~f~g~ 265 (265)
T 3swx_A 240 ELFTSEDATLGVQAFLSRTTAEFVGR 265 (265)
T ss_dssp HHHTSHHHHHHHHHHHTTCCCCCCCC
T ss_pred HHhCCHHHHHHHHHHhcCCCCCCCCC
Confidence 88999999999999999999999874
|
| >4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-61 Score=458.77 Aligned_cols=258 Identities=21% Similarity=0.315 Sum_probs=226.4
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
.+++|++++ +|+|++||||||+++|+||.+|+.+|.++|+.++.|++||+|||||+|+++||+|+|++++........
T Consensus 7 ~~e~vl~e~--~~~Va~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~ 84 (353)
T 4hdt_A 7 KNEDVLVNV--EGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADG 84 (353)
T ss_dssp -CCSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTS
T ss_pred CCCcEEEEE--ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhh
Confidence 457899999 999999999999999999999999999999999999999999999999889999999998743211111
Q ss_pred hhh--hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 147 ENF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 147 ~~~--~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
... .....+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| +
T Consensus 85 ~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g-~ 163 (353)
T 4hdt_A 85 AEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPG-K 163 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSST-T
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhh-H
Confidence 111 1223567888999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHH-----------------------------------------
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKW----------------------------------------- 263 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~----------------------------------------- 263 (331)
+|++|++||++++|+||+++||||+|||+++|++.+.++
T Consensus 164 ~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~la~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~f~~~~~~~i~ 243 (353)
T 4hdt_A 164 LGLHAALTGAPFSGADAIVMGFADHYVPHDKIDEFTRAVIADGVDAALAAHAQEPPASPLAEQRSWIDECYTGDTVADII 243 (353)
T ss_dssp HHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHHHCHHHHHHHHCBCCCCCHHHHTHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHcCCCcEEeCHHHHHHHHHHHHHhchhHHHHHhcccCCccchHHHHHHHHHHhCCCCHHHHH
Confidence 899999999999999999999999999999999888766
Q ss_pred --------------HHHHhccCHHHHHHHHHHHHcccc--CchhHHHHHHHHHHHHhCChhHHHHHHHHh--cCCCCCCC
Q 020093 264 --------------SREILRNSPTAIRVLKSALNAVDD--GHAGLQTLGGDATLIFYGTEEGSEGKTAFV--ERRRPDFL 325 (331)
Q Consensus 264 --------------a~~la~~~~~a~~~~K~~l~~~~~--~~~~~~~~~~~~~~~~~~s~d~~egi~afl--ekr~p~f~ 325 (331)
++.|++++|.+++.+|+.+++..+ ...+..+.|...+..++.++|++||++||+ |||+|+|+
T Consensus 244 ~~L~~~~~~~a~~~a~~la~~sP~a~~~~k~~l~~~~~~~sl~e~l~~E~~~~~~~~~s~D~~EGvrAfl~dekR~P~w~ 323 (353)
T 4hdt_A 244 AALRAHDAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRVSCASLKSHDLVEGIRAQLVDKDRNPKWR 323 (353)
T ss_dssp HHHHHHCSHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCCCS
T ss_pred HHHHhcccHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCCchHHHHHhhhhhCcCCCCCCC
Confidence 455889999999999999998764 345666788888889999999999999999 99999998
Q ss_pred CC
Q 020093 326 KF 327 (331)
Q Consensus 326 ~~ 327 (331)
..
T Consensus 324 p~ 325 (353)
T 4hdt_A 324 PA 325 (353)
T ss_dssp SC
T ss_pred CC
Confidence 53
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-61 Score=445.16 Aligned_cols=258 Identities=28% Similarity=0.408 Sum_probs=224.7
Q ss_pred CCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC--
Q 020093 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-- 143 (331)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~-- 143 (331)
.+++.|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|++||+|||||.| ++||+|+|++++.....
T Consensus 8 ~m~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~ 84 (274)
T 3tlf_A 8 DSFDTIKYEV--DGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTG-RAFCSGADVKEIPEDGKVI 84 (274)
T ss_dssp CCCSSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCBC-----------
T ss_pred CcCCceEEEE--ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCC-CCcccCcCHHHHhhccccc
Confidence 3456799999 899999999999999999999999999999999999999999999999 79999999998754221
Q ss_pred ---cchhhh-hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHH
Q 020093 144 ---ADYENF-GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSR 219 (331)
Q Consensus 144 ---~~~~~~-~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r 219 (331)
...... ....++.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| +|++++|+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r 163 (274)
T 3tlf_A 85 YERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSR 163 (274)
T ss_dssp ---CTTCSGGGGSCCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTT
T ss_pred cccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHH
Confidence 000000 011233566778999999999999999999999999999999999999999999999999 999999999
Q ss_pred hhCHHHHHHHHHcCC--CCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHH
Q 020093 220 LVGPKKAREMWFLAR--FYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLG 296 (331)
Q Consensus 220 ~vG~~~a~~l~ltG~--~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~ 296 (331)
++|..+|++|+++|+ .++|+||+++||||+|+|++++.+++.++|++|+..||.+++.+|++++...+. .....+.|
T Consensus 164 ~vG~~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e 243 (274)
T 3tlf_A 164 VLPRSIALRMALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEIADIVNSNAPLAVRGTRLAILKGLNVPLHEAEILA 243 (274)
T ss_dssp TSCHHHHHHHHHHGGGCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HhCHHHHHHHHHcCCCCccCHHHHHHCCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999999999999999987653 34455667
Q ss_pred HHHHHHHhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 297 GDATLIFYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 297 ~~~~~~~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
...+..++.++|++||+++|+|||+|+|+++
T Consensus 244 ~~~~~~~~~s~d~~eg~~af~ekr~p~f~g~ 274 (274)
T 3tlf_A 244 ETFRERVLRTEDAAEGPRAFVEKRQPNWQCR 274 (274)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHhcCHHHHHHHHHHhcCCCCCCCCC
Confidence 7778888999999999999999999999874
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-60 Score=435.70 Aligned_cols=254 Identities=31% Similarity=0.441 Sum_probs=224.8
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
+.|.+++ +++|++||||||+++|+||.+|+.+|.++|++++.|+++++|||||.| ++||+|+|++++.... ....
T Consensus 3 ~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~--~~~~ 77 (257)
T 2ej5_A 3 ETIRYEV--KGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAG-RAFCAGEDLSGVTEEM--DHGD 77 (257)
T ss_dssp SSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCBCC---------CHHH
T ss_pred CceEEEe--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCC-CCccCCcCHHHHhhcc--chhH
Confidence 5688998 899999999999999999999999999999999999999999999999 6999999999875321 1111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
.....+++++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.++|++
T Consensus 78 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 157 (257)
T 2ej5_A 78 VLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALE 157 (257)
T ss_dssp HHHHTHHHHHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHH
Confidence 11112567788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHHHHHHhCCh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~s~ 307 (331)
|+++|+.++|+||+++||||+|+|++++.+++.+++++|+..||.+++.+|+.++.... ......+.|...+..++.++
T Consensus 158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~ 237 (257)
T 2ej5_A 158 LAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLSAMPTKAIGLIKRLLRESEETTFDRYLEREAECQRIAGLTS 237 (257)
T ss_dssp HHHHCCCEEHHHHHHHTCCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSH
T ss_pred HHHhCCccCHHHHHHcCCcceecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCh
Confidence 99999999999999999999999999999999999999999999999999999997654 23344456666777788899
Q ss_pred hHHHHHHHHhcCCCCCCCCC
Q 020093 308 EGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 308 d~~egi~aflekr~p~f~~~ 327 (331)
|++||+++|++||+|+|+++
T Consensus 238 d~~eg~~af~ekr~p~~~~~ 257 (257)
T 2ej5_A 238 DHREGVKAFFEKRKPLFQGN 257 (257)
T ss_dssp HHHHHHHHHTTTCCCCCCCC
T ss_pred HHHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999864
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-60 Score=435.73 Aligned_cols=255 Identities=30% Similarity=0.481 Sum_probs=228.8
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
+|..|.+++ +++|++||||||+++|+||.+|+.+|.++|++++.|+++++|||||.| ++||+|+|++++..... ..
T Consensus 3 ~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~-~~ 78 (258)
T 2pbp_A 3 EFVSIAARQ--EGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRG-RAFAAGADIQEMAKDDP-IR 78 (258)
T ss_dssp -CCSEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCCCHHHHHTCCH-HH
T ss_pred CcceEEEEe--eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCccCCcCHHHHhcccc-hh
Confidence 456789999 899999999999999999999999999999999999999999999998 69999999998753211 01
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
... ...+ +++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus 79 ~~~-~~~~-~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 156 (258)
T 2pbp_A 79 LEW-LNQF-ADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRA 156 (258)
T ss_dssp HHH-HCTT-HHHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred HHH-HHHH-HHHHHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHHHH
Confidence 111 1123 56778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHHHHHHhC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATLIFYG 305 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~ 305 (331)
++|+++|+.++|+||+++||||+|+|++++.+++.++|++|+..+|.+++.+|++++...+ ......+.|...+..++.
T Consensus 157 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~ 236 (258)
T 2pbp_A 157 LEWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQPPLALRLIKEAVQKAVDYPLYEGMQFERKNFYLLFA 236 (258)
T ss_dssp HHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCccCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999997654 333445666777788899
Q ss_pred ChhHHHHHHHHhcCCCCCCCCC
Q 020093 306 TEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 306 s~d~~egi~aflekr~p~f~~~ 327 (331)
++|++||+++|++||+|+|+++
T Consensus 237 s~d~~eg~~af~ekr~p~~~~~ 258 (258)
T 2pbp_A 237 SEDQKEGMAAFLEKRKPRFQGK 258 (258)
T ss_dssp SHHHHHHHHHHHTTSCCCCCCC
T ss_pred CHHHHHHHHHHHccCCCCCCCC
Confidence 9999999999999999999864
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-61 Score=444.25 Aligned_cols=255 Identities=26% Similarity=0.403 Sum_probs=217.0
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
..+|.+++ +++|++||||||+++|+||.+|+.+|.++|++++.|++||+|||+|.| ++||+|+|++++...... .
T Consensus 19 ~~~v~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~--~ 93 (278)
T 4f47_A 19 GPDALVEQ--RGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAG-GYFCAGMDLKAATKKPPG--D 93 (278)
T ss_dssp CCSEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCCC-----------------
T ss_pred CCceEEEE--ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CcccCCcChHhhhccchh--h
Confidence 35699999 999999999999999999999999999999999999999999999999 699999999987543211 1
Q ss_pred hhhh-hhHHHHHHHHH---cCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCH
Q 020093 148 NFGR-LNVLDLQVQIR---RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP 223 (331)
Q Consensus 148 ~~~~-~~~~~l~~~l~---~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 223 (331)
.... .....++..+. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus 94 ~~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 173 (278)
T 4f47_A 94 SFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPY 173 (278)
T ss_dssp -------CTTCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHSCH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhCH
Confidence 1100 01122334555 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHH
Q 020093 224 KKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLI 302 (331)
Q Consensus 224 ~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~ 302 (331)
.+|++|+++|+.++|+||+++||||+|+|++++.+++.++|++|+..+|.+++.+|++++...+. .....+.|...+..
T Consensus 174 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~ 253 (278)
T 4f47_A 174 TVACDLLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEIAEIIAANGPLAVQAILRTIRETEGMHENEAFKIDTRIGIE 253 (278)
T ss_dssp HHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHGG
T ss_pred HHHHHHHHcCCcCCHHHHHHCCCceEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987653 34445667777778
Q ss_pred HhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 303 FYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 303 ~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
++.++|++||+++|+|||+|+|+++
T Consensus 254 ~~~s~d~~eg~~Af~ekr~p~f~g~ 278 (278)
T 4f47_A 254 VFLSDDAKEGPQAFAQKRKPNFQNR 278 (278)
T ss_dssp GGGSSHHHHHHHHHHTTSCCCCCCC
T ss_pred HhcCHHHHHHHHHHhcCCCCCCCCC
Confidence 8999999999999999999999874
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-60 Score=437.60 Aligned_cols=256 Identities=26% Similarity=0.324 Sum_probs=228.6
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC--cch
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY--ADY 146 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~--~~~ 146 (331)
+.|.+++ +++|++||||||+++|+||.+|+.+|.++|++++.|+++++|||||.| ++||+|+|++++..... ...
T Consensus 3 ~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 79 (269)
T 1nzy_A 3 EAIGHRV--EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAE-DAFCAGFYLREIPLDKGVAGVR 79 (269)
T ss_dssp SSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGSCSSSHHHHHH
T ss_pred ceEEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCC-CCcccCcCHHHHhhcccccChH
Confidence 4588888 899999999999999999999999999999999999999999999999 69999999998753210 011
Q ss_pred hh--hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 147 EN--FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 147 ~~--~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
.. .....+++++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 159 (269)
T 1nzy_A 80 DHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMR 159 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhhHH
Confidence 11 1111245778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHH
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIF 303 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~ 303 (331)
+|++|+++|+.++|+||+++||||+|+|++++.+++.+++++|+..||.+++.+|+.++..... .....+.|...+..+
T Consensus 160 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~ 239 (269)
T 1nzy_A 160 RAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEIQNVIAS 239 (269)
T ss_dssp HHHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999976543 334445666677778
Q ss_pred hCChhHHHHHHHHhcCCCCCCCCC
Q 020093 304 YGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 304 ~~s~d~~egi~aflekr~p~f~~~ 327 (331)
+.++|++||+++|+|||+|+|+++
T Consensus 240 ~~s~d~~egi~af~ekr~p~f~~~ 263 (269)
T 1nzy_A 240 VTHPHFMPCLTRFLDGHRADRPQV 263 (269)
T ss_dssp HHSTTHHHHHHHHHTTCCTTCCSS
T ss_pred hcCHHHHHHHHHHHhcCCCCCCCC
Confidence 889999999999999999999886
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-61 Score=451.20 Aligned_cols=258 Identities=29% Similarity=0.387 Sum_probs=188.8
Q ss_pred CcccEEEEEeeCC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhc---CC
Q 020093 67 EFTDIIYEKAVGE-GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTR---DG 142 (331)
Q Consensus 67 ~~~~v~~~~~~~~-~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~---~~ 142 (331)
.++.|.+++ ++ +|++||||||+++|+||.+|+.+|.++|++++.|++||+|||||.| ++||+|+|++++.. ..
T Consensus 27 ~~~~v~~~~--~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~FcaG~Dl~~~~~~~~~~ 103 (298)
T 3qre_A 27 AQDAVLYEA--TPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRG-RGFCAGAYLGSADAAAGYD 103 (298)
T ss_dssp -CCSEEEEE--CTTSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSEECC------------
T ss_pred CCCeEEEEE--eCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcCHHHHhhccccc
Confidence 357799999 88 9999999999999999999999999999999999999999999999 69999999998753 11
Q ss_pred Ccc----hhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHH
Q 020093 143 YAD----YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMS 218 (331)
Q Consensus 143 ~~~----~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~ 218 (331)
... ...........++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~ 183 (298)
T 3qre_A 104 KTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILP 183 (298)
T ss_dssp -----------------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHH
Confidence 110 0000011123456678999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhcc-CHHHHHHHHHHHHccccC-chhHHHHH
Q 020093 219 RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRN-SPTAIRVLKSALNAVDDG-HAGLQTLG 296 (331)
Q Consensus 219 r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~-~~~a~~~~K~~l~~~~~~-~~~~~~~~ 296 (331)
|++|..+|++|+++|+.++|+||+++||||+|||++++.+++.++|++|+.. ||.+++.+|++++...+. .......+
T Consensus 184 r~vG~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e 263 (298)
T 3qre_A 184 RLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSPSSMAVIKRQVYGDATRDVVEATSHA 263 (298)
T ss_dssp HHSCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHHSCHHHHHHHHHHHHGGGGC---------
T ss_pred HhcCHHHHHHHHHcCCCCCHHHHHHcCCCeEecCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 999999999999987643 22333445
Q ss_pred HHHHHHHhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 297 GDATLIFYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 297 ~~~~~~~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
...+..++.++|++||++||+|||+|+|++.
T Consensus 264 ~~~~~~~~~s~d~~Egv~AF~ekR~P~f~~~ 294 (298)
T 3qre_A 264 EVLLREAMPRPDVIEGIVSFLEKRPPQFPSL 294 (298)
T ss_dssp -------------------------------
T ss_pred HHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence 5566778889999999999999999999875
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-60 Score=434.22 Aligned_cols=251 Identities=27% Similarity=0.389 Sum_probs=225.9
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
++++|.+++ +++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++........
T Consensus 5 m~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~ 81 (256)
T 3trr_A 5 MADEVLIEQ--RDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAG-GNFCAGMDLKAFVSGEAVLS 81 (256)
T ss_dssp CCCSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGG-GCCCCCBCHHHHHHTCCCEE
T ss_pred CCCceEEEE--ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CceecCcCHHHhccccchhh
Confidence 446799999 999999999999999999999999999999999999999999999999 69999999998764322111
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
.. . + .+ ..+ .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus 82 ~~--~--~-~~-~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 154 (256)
T 3trr_A 82 ER--G--L-GF-TNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVA 154 (256)
T ss_dssp TT--E--E-TT-SSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHH
T ss_pred hh--h--h-hH-HHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHH
Confidence 10 1 1 11 234 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYG 305 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~ 305 (331)
++|+++|+.++|+||+++||||+|||++++.+++.++|++|+..||.+++.+|++++...+. .....+.|...+..++.
T Consensus 155 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~ 234 (256)
T 3trr_A 155 MELALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITANGPLAVAATKRIIIESASWAPEEAFAKQGEILMPIFV 234 (256)
T ss_dssp HHHHHHCCCEEHHHHGGGTCCSEEECTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcCHHHHHHCCCeeEecChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999987653 34445667777888899
Q ss_pred ChhHHHHHHHHhcCCCCCCCCC
Q 020093 306 TEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 306 s~d~~egi~aflekr~p~f~~~ 327 (331)
++|++||+++|+|||+|+|+++
T Consensus 235 s~d~~eg~~af~ekr~p~f~g~ 256 (256)
T 3trr_A 235 SEDAKEGAKAFAEKRAPVWQGK 256 (256)
T ss_dssp SHHHHHHHHHHHTTSCCCCCCC
T ss_pred CHHHHHHHHHHhcCCCCCCCCC
Confidence 9999999999999999999874
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-61 Score=442.46 Aligned_cols=259 Identities=24% Similarity=0.334 Sum_probs=221.9
Q ss_pred CCcccEEEEEeeCC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc
Q 020093 66 TEFTDIIYEKAVGE-GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (331)
Q Consensus 66 ~~~~~v~~~~~~~~-~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~ 144 (331)
++|++|.+++ ++ +|++||||||+ +|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......
T Consensus 10 ~~~~~v~~~~--~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~ 85 (272)
T 3qk8_A 10 QDFPSLRFEP--GEHGVLNLVLDSPG-LNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEG-KAFSSGGSFELIDETIGD 85 (272)
T ss_dssp GGCTTEEEEE--CSTTEEEEEECCHH-HHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESS-SCSBCEECHHHHHHHHHC
T ss_pred CCCCeEEEEE--eCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCC-CCeeCCcCHHHHhccccc
Confidence 3567899998 65 89999999999 9999999999999999999999999999999999 699999999987432111
Q ss_pred chh-hhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCH
Q 020093 145 DYE-NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP 223 (331)
Q Consensus 145 ~~~-~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 223 (331)
... ......+++++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 165 (272)
T 3qk8_A 86 YEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGM 165 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCH
Confidence 000 0111234578889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHH
Q 020093 224 KKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIF 303 (331)
Q Consensus 224 ~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~ 303 (331)
.+|++|+++|+.++|+||+++||||+|||++++.+++.++|++|+..||.+++.+|++++...+......+........+
T Consensus 166 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~e~~~ 245 (272)
T 3qk8_A 166 AKAKYYLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENLAQGAQNAIRWTKRSLNHWYRMFGPTFETSLGLEFLG 245 (272)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCCcEeeCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999865431111111122222467
Q ss_pred hCChhHHHHHHHHhcCCCCCCCCCC
Q 020093 304 YGTEEGSEGKTAFVERRRPDFLKFP 328 (331)
Q Consensus 304 ~~s~d~~egi~aflekr~p~f~~~~ 328 (331)
+.++|++||++||+|||+|+|++++
T Consensus 246 ~~s~d~~eg~~Af~ekR~p~f~g~~ 270 (272)
T 3qk8_A 246 FTGPDVQEGLAAHRQKRPARFTDRT 270 (272)
T ss_dssp TTSSHHHHHHHHHHTTSCCCC----
T ss_pred hCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 8999999999999999999999874
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-59 Score=431.48 Aligned_cols=254 Identities=25% Similarity=0.365 Sum_probs=228.4
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEe-CCCCceeccccccchhcCCCcc
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG-KGTEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g-~g~~~FcaG~Dl~~~~~~~~~~ 145 (331)
+++.|.+++ +++|++|||||| ++|+||.+|+.+|.++|++++.|+++++|||+| .| ++||+|+|++++... . .
T Consensus 7 ~~~~i~~~~--~~~v~~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g-~~F~aG~Dl~~~~~~-~-~ 80 (265)
T 2ppy_A 7 KKQYLTVFK--EDGIAEIHLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVP-KFFSAGADINFLRSA-D-P 80 (265)
T ss_dssp ECSSEEEEE--ETTEEEEEECSS-TTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECST-TEEECCBCHHHHTTS-C-H
T ss_pred CCCeEEEEe--eCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCC-CeeeeCcCHHHHhcc-c-h
Confidence 356799999 899999999999 999999999999999999999999999999999 87 699999999987541 1 1
Q ss_pred hhhhhhhhH-HHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCc-eeecCCCCccCCCCchHHHHHHHhhCH
Q 020093 146 YENFGRLNV-LDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA-IFGQTGPKVGSFDAGYGSSIMSRLVGP 223 (331)
Q Consensus 146 ~~~~~~~~~-~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a-~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 223 (331)
........+ ++++..|.++||||||+|||+|+|||++|+++||+|||++++ +|++||+++|++|++|++++|+|++|.
T Consensus 81 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 160 (265)
T 2ppy_A 81 RFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGY 160 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhCH
Confidence 111111234 577889999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHH
Q 020093 224 KKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLI 302 (331)
Q Consensus 224 ~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~ 302 (331)
.+|++|+++|+.++|+||+++||||+|+|++++.+++.+++++|+..+|.+++.+|++++..... .......|...+..
T Consensus 161 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~ 240 (265)
T 2ppy_A 161 SRALDMNITGETITPQEALEIGLVNRVFPQAETRERTREYARKLANSATYAVSNIKLAIMNGKEMPLNVAIRYEGELQNL 240 (265)
T ss_dssp HHHHHHHHHCCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986543 33444566677778
Q ss_pred HhCChhHHHHHHHHhcCCCCCCCC
Q 020093 303 FYGTEEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 303 ~~~s~d~~egi~aflekr~p~f~~ 326 (331)
++.++|++||+++|+|||+|+|++
T Consensus 241 ~~~s~d~~egi~af~ekr~p~~~~ 264 (265)
T 2ppy_A 241 LFRSEDAKEGLSAFLEKRQPNWKG 264 (265)
T ss_dssp HHTSHHHHHHHHHHHTTSCCCCCC
T ss_pred HhCCHHHHHHHHHHHcCCCCCCCC
Confidence 899999999999999999999986
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-60 Score=435.73 Aligned_cols=256 Identities=20% Similarity=0.259 Sum_probs=217.9
Q ss_pred CCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc
Q 020093 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~ 145 (331)
..|+.|.+++ +++|++||||||+++|+||.+|+.+|.+++++++.| ++|+|||||.| ++||+|+||+++.......
T Consensus 4 m~~~~i~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~ 79 (267)
T 3hp0_A 4 VTYQTIKVRF--QASVCYITFHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLP-EVFCFGADFQEIYQEMKRG 79 (267)
T ss_dssp -CCSSEEEEE--ETTEEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHS-SCCEEEEECCS-SCSBCCBCHHHHHHTTTTT
T ss_pred CCCceEEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhcC-CCEEEEEECCC-CceecCcCHHHHHhcccCh
Confidence 3467899999 999999999999999999999999999999999986 69999999999 6999999999875421110
Q ss_pred -hhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 146 -YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 146 -~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
........++.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|+|++|..
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~ 158 (267)
T 3hp0_A 80 RKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACV-LPFLIRRIGRQ 158 (267)
T ss_dssp CCSCCCCHHHHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTT-HHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhH-HHHHHHHhCHH
Confidence 0011112356788899999999999999999999999999999999999999999999999999875 78899999999
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHh
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFY 304 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~ 304 (331)
+|++|++||+.++|+||+++||||+|+|+.+ +.+.+++++|+..||.+++.+|++++..........+.+.+.+..++
T Consensus 159 ~A~ellltg~~i~A~eA~~~GLV~~vv~~~~--~~~~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~e~~~~~~~~ 236 (267)
T 3hp0_A 159 KAHYMTLMTKPISVQEASEWGLIDAFDAESD--VLLRKHLLRLRRLNKKGIAHYKQFMSSLDHQVSRAKATALTANQDMF 236 (267)
T ss_dssp HHHHHHHHCCCBCHHHHHHHTSSSCBCSCTT--HHHHHHHHHHTTSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHCCCcceecCCHH--HHHHHHHHHHHhCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998654 45789999999999999999999999865433333445566677889
Q ss_pred CChhHHHHHHHHhcCCCCCCCCCC
Q 020093 305 GTEEGSEGKTAFVERRRPDFLKFP 328 (331)
Q Consensus 305 ~s~d~~egi~aflekr~p~f~~~~ 328 (331)
.++|++||++||+|||+|.|.+.+
T Consensus 237 ~s~d~~Eg~~AF~ekr~P~~~~~~ 260 (267)
T 3hp0_A 237 SDPQNQMGIIRYVETGQFPWEDQE 260 (267)
T ss_dssp TSTTHHHHHHHHTTSCCC------
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCC
Confidence 999999999999999999998864
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-61 Score=441.35 Aligned_cols=252 Identities=25% Similarity=0.306 Sum_probs=204.5
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
.+++|.+++ +++|++||||||+++|+||.+|+.+|.++|+.++.|+++|+|||||.| ++||+|+|++++........
T Consensus 9 ~m~~v~~~~--~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~ 85 (262)
T 3r9q_A 9 MQPAVRVEK--AGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDN-GTFCAGADLKAMGTDRGNEL 85 (262)
T ss_dssp -CCSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCTTTTTSTTSCCC
T ss_pred cCCEEEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcCHHHHhccChhhH
Confidence 355799999 999999999999999999999999999999999999999999999999 69999999998754322110
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
. ......+...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus 86 ~---~~~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A 162 (262)
T 3r9q_A 86 H---PHGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRA 162 (262)
T ss_dssp C---TTSSCTTSSTTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHHHH
T ss_pred H---HhhhhHHHHHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHHHH
Confidence 0 0011122334569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYG 305 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~ 305 (331)
++|+++|+.++|+||+++||||+|||++++.+++.++|++|+..||.+++.+|++++...+. .....+.|.. +..++.
T Consensus 163 ~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~l~~~l~~e~~-~~~~~~ 241 (262)
T 3r9q_A 163 MDLILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAFPQQCVRADRDSAIAQWGMAEEAALDNEFG-SIERVA 241 (262)
T ss_dssp HHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTTSCHHHHHHHHHT-HHHHHH
T ss_pred HHHHHcCCcCCHHHHHHcCCccEecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHH-HHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999987653 3344455666 666777
Q ss_pred ChhHHHHHHHHhcCCCCCCCC
Q 020093 306 TEEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 306 s~d~~egi~aflekr~p~f~~ 326 (331)
+ |++||++||+|||+|.|++
T Consensus 242 s-d~~Eg~~AF~ekr~p~~~~ 261 (262)
T 3r9q_A 242 T-EALEGAGRFAAGEGRHGAG 261 (262)
T ss_dssp C--------------------
T ss_pred c-HHHHHHHHHHcCCCCCCCC
Confidence 8 9999999999999999986
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-60 Score=444.43 Aligned_cols=257 Identities=23% Similarity=0.269 Sum_probs=228.8
Q ss_pred CCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc
Q 020093 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~ 145 (331)
.+|+.|.+++ +++|++||||||+ +|+||.+|+.+|.++|++++.|++||+|||||.|+++||+|+|++++.......
T Consensus 6 ~~~~~i~~~~--~~~va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~ 82 (287)
T 3gkb_A 6 DAYSTLRVSS--EHGVARIILDNPP-VNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQ 82 (287)
T ss_dssp -CCSSEEEEE--ETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHH
T ss_pred CCCCeEEEEE--ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccc
Confidence 4567899999 8999999999998 799999999999999999999999999999999977999999999875211000
Q ss_pred --hh--hhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeC-CceeecCCCCccCCCCchHHHHHHHh
Q 020093 146 --YE--NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD-NAIFGQTGPKVGSFDAGYGSSIMSRL 220 (331)
Q Consensus 146 --~~--~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~L~r~ 220 (331)
.. ......++.++..|.++||||||+|||+|+|||++|+++||+|||++ +++|++||+++|++|++|++++|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~ 162 (287)
T 3gkb_A 83 ELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGR 162 (287)
T ss_dssp HHHHTSCTTCCTTHHHHHHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHH
Confidence 00 00012346788899999999999999999999999999999999999 99999999999999999999999999
Q ss_pred hCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHH
Q 020093 221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDAT 300 (331)
Q Consensus 221 vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~ 300 (331)
+|..+|++|++||++|+|+||+++||||+|||+++|.+++.++|++|+..||.+++.+|++++... .....+.|...+
T Consensus 163 vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a~~~~K~~l~~~~--~~~~l~~e~~~~ 240 (287)
T 3gkb_A 163 VGRNRALEVVLTADLFDAETAASYGWINRALPADELDEYVDRVARNIAALPDGVIEAAKRSLPADD--LKEGLLGENDAW 240 (287)
T ss_dssp HCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCTTHHHHHHHHSCCCC--CHHHHHHHHHHH
T ss_pred hCHHHHHHHHHcCCCCCHHHHHHCCCCcEEeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--HHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999753 234456677778
Q ss_pred HHHhCChhHHHHHHHHhcCCC--CCCCCC
Q 020093 301 LIFYGTEEGSEGKTAFVERRR--PDFLKF 327 (331)
Q Consensus 301 ~~~~~s~d~~egi~aflekr~--p~f~~~ 327 (331)
..++.++|++||+++|+|||+ |+|+++
T Consensus 241 ~~~~~s~d~~eg~~AF~ekr~~~P~f~~~ 269 (287)
T 3gkb_A 241 AATFSLPAAQQLISGGLKDGAQTPAGERD 269 (287)
T ss_dssp HHHHTSHHHHHHHHHHHHTTTTSHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHhcCCCCCchhhh
Confidence 888999999999999999988 999754
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-60 Score=433.73 Aligned_cols=248 Identities=30% Similarity=0.438 Sum_probs=215.1
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~ 144 (331)
...++.|.+++ +++|++||||||+++|+||.+|+.+|.++|+++++| ++|+|||||.| ++||+|+|++... .
T Consensus 17 ~~~~~~i~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G-~~FcaG~Dl~~~~---~- 88 (264)
T 3he2_A 17 QGPGSMIGITQ--AEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQG-TAFCAGADLSGDA---F- 88 (264)
T ss_dssp -----CEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESS-SCSBCCBCCTTCT---T-
T ss_pred CCCCCeEEEEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCC-CCccCCcCCccch---h-
Confidence 34556799999 999999999999999999999999999999999988 99999999999 6999999998311 1
Q ss_pred chhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 145 ~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
.... ...+..++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus 89 -~~~~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 166 (264)
T 3he2_A 89 -AADY-PDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHG 166 (264)
T ss_dssp -GGGH-HHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHHCHH
T ss_pred -hHHH-HHHHHHHHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHHHHHhCHH
Confidence 1111 22356788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHh
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFY 304 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~ 304 (331)
+|++|+++|+.++|+||+++||||+|++ .+++.++|++|+..||.+++.+|++++.... .....+.+...+..++
T Consensus 167 ~A~~llltG~~i~A~eA~~~GLV~~v~~----~~~a~~~A~~la~~~p~a~~~~K~~l~~~~~-~~~~~~~e~~~~~~~~ 241 (264)
T 3he2_A 167 RARAMLLSAEKLTAEIALHTGMANRIGT----LADAQAWAAEIARLAPLAIQHAKRVLNDDGA-IEEAWPAHKELFDKAW 241 (264)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTSCSEECC----HHHHHHHHHHHHTSCHHHHHHHHHHHHTSSC-SCCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccHHHHHHCCCeEEEec----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999986 4678999999999999999999999998632 2222344556677889
Q ss_pred CChhHHHHHHHHhcCCCCCCCCC
Q 020093 305 GTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 305 ~s~d~~egi~aflekr~p~f~~~ 327 (331)
.++|++||++||+|||+|+|+++
T Consensus 242 ~s~d~~Eg~~AF~ekR~P~f~g~ 264 (264)
T 3he2_A 242 GSQDVIEAQVARMEKRPPKFQGA 264 (264)
T ss_dssp TSHHHHHHHHHHHTTSCCCCCCC
T ss_pred CCHHHHHHHHHHhcCCCCCCCCC
Confidence 99999999999999999999874
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-60 Score=439.08 Aligned_cols=253 Identities=30% Similarity=0.442 Sum_probs=228.5
Q ss_pred EEEEEeeC--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 71 IIYEKAVG--EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 71 v~~~~~~~--~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
|.+++ + ++|++||||||+++|+||.+|+.+|.++|+.++.|++||+|||+|.| ++||+|+|++++..........
T Consensus 26 v~~~~--~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~~~~~~ 102 (286)
T 3myb_A 26 LLLQD--RDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASG-KAFCAGHDLKEMRAEPSREYYE 102 (286)
T ss_dssp SEEEE--ECTTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECS-SCSBCCBCHHHHHSSCCHHHHH
T ss_pred EEEEE--ecCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCccCCcChhhhhccccHHHHH
Confidence 89999 8 99999999999999999999999999999999999999999999999 7999999999886521111111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
.....++.++.+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|+|++|..+|++
T Consensus 103 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~-~~g~~~~L~r~vG~~~A~~ 181 (286)
T 3myb_A 103 KLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVGRKAAFE 181 (286)
T ss_dssp HHHHHHHHHHHHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCC-CHHHHHHHTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCC-CchHHHHHHHHcCHHHHHH
Confidence 112235678889999999999999999999999999999999999999999999999999 7888999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCCh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTE 307 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~ 307 (331)
|+++|+.++|+||+++||||+|||++++.+++.++|++|+..||.+++.+|+.++...+. .....+.|...+..++.++
T Consensus 182 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~ 261 (286)
T 3myb_A 182 MLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKPRAAVAMGKALFYRQIETDIESAYADAGTTMACNMMDP 261 (286)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHSH
T ss_pred HHHcCCCCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999999999999999999999999999999987653 3444566777788889999
Q ss_pred hHHHHHHHHhcCCCCCCCCC
Q 020093 308 EGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 308 d~~egi~aflekr~p~f~~~ 327 (331)
|++||+++|+|||+|+|+++
T Consensus 262 d~~egi~aFlekr~p~f~g~ 281 (286)
T 3myb_A 262 SALEGVSAFLEKRRPEWHTP 281 (286)
T ss_dssp HHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHHccCCCCCCCC
Confidence 99999999999999999985
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-59 Score=437.32 Aligned_cols=256 Identities=30% Similarity=0.405 Sum_probs=226.7
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
+...|.+++ +++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.| ++||+|+|++++........
T Consensus 31 ~~~~v~~~~--~~~V~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~ 107 (287)
T 2vx2_A 31 EPRPTSARQ--LDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEG-PVFSSGHDLKELTEEQGRDY 107 (287)
T ss_dssp -CCSEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESS-SEEECCSCCC-CCGGGCHHH
T ss_pred CCcceEEEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCccCCcCHHHHhcccchhH
Confidence 346799999 899999999999999999999999999999999999999999999999 69999999998643211000
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
.......+++++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++ |+|++|..+|
T Consensus 108 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A 186 (287)
T 2vx2_A 108 HAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVA 186 (287)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHHHH
Confidence 000112345778899999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYG 305 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~ 305 (331)
++|+++|+.++|+||+++||||+|||++++.+++.++|++|+..+|.+++.+|+.++...+. .....+.+...+..++.
T Consensus 187 ~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~ 266 (287)
T 2vx2_A 187 LEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLA 266 (287)
T ss_dssp HHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999876543 33444566677778899
Q ss_pred ChhHHHHHHHHhcCCCCCCCC
Q 020093 306 TEEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 306 s~d~~egi~aflekr~p~f~~ 326 (331)
++|++||+++|+|||+|+|++
T Consensus 267 s~d~~egi~af~ekr~p~f~g 287 (287)
T 2vx2_A 267 LRDGQEGITAFLQKRKPVWSH 287 (287)
T ss_dssp SHHHHHHHHHHHTTSCCCCCC
T ss_pred CHHHHHHHHHHHcCCCCCCCC
Confidence 999999999999999999975
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-60 Score=434.12 Aligned_cols=255 Identities=27% Similarity=0.392 Sum_probs=227.5
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEe-CCCCceeccccccchhcCCCcch
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG-KGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g-~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
|+.|.+++ +++|++||||||+++|+||.+|+.+|.++|++++.|+ +++||||| .|+++||+|+|++++.......
T Consensus 3 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~- 78 (261)
T 1ef8_A 3 YQYVNVVT--INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDP- 78 (261)
T ss_dssp CSSEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CT-
T ss_pred cceEEEEE--eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchh-
Confidence 56799999 8999999999999999999999999999999999999 99999999 8866999999999875321111
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
.. ....+++++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.++|
T Consensus 79 ~~-~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 157 (261)
T 1ef8_A 79 LS-YDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIV 157 (261)
T ss_dssp TC-TTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHH
T ss_pred HH-HHHHHHHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCHHHH
Confidence 11 11235678889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHHHH--HH
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATL--IF 303 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~--~~ 303 (331)
++|+++|+.++|+||+++||||+|+|++++.+++.+++++|+..||.+++.+|++++...+ ......+.|...+. .+
T Consensus 158 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~ 237 (261)
T 1ef8_A 158 KELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAV 237 (261)
T ss_dssp HHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCccCHHHHHHCCCcccccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999999999999999999999999999999999999999987653 33344556666677 78
Q ss_pred hCChhHHHHHHHHhcCCCCCCCCC
Q 020093 304 YGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 304 ~~s~d~~egi~aflekr~p~f~~~ 327 (331)
+.++|++||+++|+|||+|+|+++
T Consensus 238 ~~s~d~~eg~~af~ekr~p~~~~~ 261 (261)
T 1ef8_A 238 YDSEDYQEGMNAFLEKRKPNFVGH 261 (261)
T ss_dssp HTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred hcCHHHHHHHHHHHccCCCCCCCC
Confidence 899999999999999999999864
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-60 Score=435.40 Aligned_cols=253 Identities=26% Similarity=0.375 Sum_probs=218.6
Q ss_pred CCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc
Q 020093 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~ 145 (331)
.+++.|.+++ +++|++||||||+++|+||.+|+.+|.++|++++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 12 ~~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~ 88 (265)
T 3qxi_A 12 DTEPEVLVEQ--RDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAG-GSFCAGMDLKAFARGENVV 88 (265)
T ss_dssp ---CCEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCCCCSBC-------CCCE
T ss_pred CCCCeEEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCeeCCCChhhhhccchhh
Confidence 4567899999 899999999999999999999999999999999999999999999999 5999999999875432211
Q ss_pred hhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHH
Q 020093 146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (331)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 225 (331)
... . .+ . +..+.. ||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus 89 ~~~--~-~~-~-~~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 162 (265)
T 3qxi_A 89 VEG--R-GL-G-FTERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAI 162 (265)
T ss_dssp ETT--T-EE-T-TTTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSCHHH
T ss_pred hhh--h-hh-h-HHHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhCHHH
Confidence 100 0 11 0 223334 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHHHHHHh
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATLIFY 304 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~ 304 (331)
|++|+++|+.++|+||+++||||+|||++++.+++.++|++|+..||.+++.+|++++...+ ......+.|...+..++
T Consensus 163 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~ 242 (265)
T 3qxi_A 163 AMELALTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKITANGPLAVAATKRIITESRGWSLDTRFAQQMKILFPIF 242 (265)
T ss_dssp HHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHCCCccEeeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998664 33445566777778888
Q ss_pred CChhHHHHHHHHhcCCCCCCCCC
Q 020093 305 GTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 305 ~s~d~~egi~aflekr~p~f~~~ 327 (331)
.++|++||+++|+|||+|+|++.
T Consensus 243 ~s~d~~eg~~af~ekr~p~f~g~ 265 (265)
T 3qxi_A 243 TSNDAKEGAIAFAEKRPPRWTGT 265 (265)
T ss_dssp HCHHHHHHHHHHHTTSCCCCCCC
T ss_pred cCHHHHHHHHHHHcCCCCCCCCC
Confidence 99999999999999999999874
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-59 Score=431.11 Aligned_cols=255 Identities=20% Similarity=0.263 Sum_probs=220.9
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCce-eccccccchhc--C-CC
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAF-CSGGDQALRTR--D-GY 143 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~F-caG~Dl~~~~~--~-~~ 143 (331)
|+.|.+++ +++|++||||||+++|+||.+|+.+|.++++.++.|+++|+|||||.| +.| |+|+|++++.. . ..
T Consensus 3 ~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FF~aG~Dl~~~~~~~~~~~ 79 (263)
T 3lke_A 3 LSYVHTEI--QNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKH-RAYFSSGPRLEDLLICASDQS 79 (263)
T ss_dssp CCSEEEEE--CSSEEEEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESC-TTEEECBSCHHHHHHHHHCSS
T ss_pred CcEEEEEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCC-CceEecCcCHHHHHhhcccCC
Confidence 56799999 999999999999999999999999999999999999999999999999 578 99999998754 1 11
Q ss_pred cchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCH
Q 020093 144 ADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP 223 (331)
Q Consensus 144 ~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 223 (331)
..........++.++.+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG~ 159 (263)
T 3lke_A 80 DVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGY 159 (263)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhCH
Confidence 11111112234678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHhcCcccEecC-CCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHH
Q 020093 224 KKAREMWFLARFYTAEEAEKMGLVNTVVP-LEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATL 301 (331)
Q Consensus 224 ~~a~~l~ltG~~~~a~eA~~~GLv~~vv~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~ 301 (331)
.+|++|+++|+.++|+||+++||||+||| ++++.+++.++|++|+..||.+++.+|++++...+. .....+.|...+.
T Consensus 160 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~ 239 (263)
T 3lke_A 160 EQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGYVPAIAATKKLLKGKAAEELKQQLEQETEELV 239 (263)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHcCCCcEecCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999999999999999999986542 3344566777788
Q ss_pred HHhCChhHHHHHHHHhcCCCCCCC
Q 020093 302 IFYGTEEGSEGKTAFVERRRPDFL 325 (331)
Q Consensus 302 ~~~~s~d~~egi~aflekr~p~f~ 325 (331)
.++.++|++||+++|+||++|.|.
T Consensus 240 ~~~~s~d~~e~~~~~~~~~~~~~~ 263 (263)
T 3lke_A 240 ALFKQTEIKKRLEALVEGHHHHHH 263 (263)
T ss_dssp HHTTSHHHHHHHHHC---------
T ss_pred HHhcCHHHHHHHHhhhccCCCCCC
Confidence 899999999999999999999984
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-60 Score=432.84 Aligned_cols=253 Identities=24% Similarity=0.333 Sum_probs=193.8
Q ss_pred CCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc
Q 020093 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~ 145 (331)
..+..|.+++ +++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 3 ~~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~ 79 (256)
T 3qmj_A 3 GSMVTLQIDD--DNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSG-RGFSAGTDLAEMQARITDP 79 (256)
T ss_dssp ---CCEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TEEECCBCHHHHHHHHHSS
T ss_pred CCcceEEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcCHHHHhhcccch
Confidence 3457799999 999999999999999999999999999999999999999999999999 6999999999874311100
Q ss_pred hhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHH
Q 020093 146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (331)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 225 (331)
........++.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 159 (256)
T 3qmj_A 80 NFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQN 159 (256)
T ss_dssp SCCCCSSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHH
Confidence 00001123567888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHh
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFY 304 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~ 304 (331)
|++|+++|+.++|+||+++||||+|+|++++.+++.++|++|+..||.+++.+|++++...+. .....+.|...+..++
T Consensus 160 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~ 239 (256)
T 3qmj_A 160 AAWLLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEILAAKPISSLMAVKHTMVEPNRAQIAAASARENAHFAELM 239 (256)
T ss_dssp HHHHHHSCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHcCCCCCHHHHHHCCCccEEeCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999987542 3334455666777888
Q ss_pred CChhHHHHHHHHhcCCC
Q 020093 305 GTEEGSEGKTAFVERRR 321 (331)
Q Consensus 305 ~s~d~~egi~aflekr~ 321 (331)
.++|++||+++|+|||+
T Consensus 240 ~s~d~~eg~~af~ekr~ 256 (256)
T 3qmj_A 240 GAQANAAALADFTDRRR 256 (256)
T ss_dssp -----------------
T ss_pred cCHHHHHHHHHHHccCC
Confidence 99999999999999986
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-59 Score=436.61 Aligned_cols=259 Identities=22% Similarity=0.328 Sum_probs=217.5
Q ss_pred CCCcccEEEEEeeCCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC
Q 020093 65 GTEFTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY 143 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLn-rp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~ 143 (331)
...|+.|.+++ +++|++|||| ||+++|+||.+|+.+|.++|++++.|+. |+|||||.| ++||+|+||+++.....
T Consensus 19 ~~~~~~v~~~~--~~~v~~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~-r~vVltg~G-~~FcaG~Dl~~~~~~~~ 94 (291)
T 2fbm_A 19 SSTYRDIVVKK--EDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAG-SVFCCGLDFGYFVKHLR 94 (291)
T ss_dssp --CCSSEEEEE--CSSEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEECS-SCSBCCBCHHHHHHHHH
T ss_pred CCCcceEEEEE--eCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEECCC-CCccCCcCHHHHHhccc
Confidence 45678899999 9999999999 7999999999999999999999998875 999999999 69999999998743100
Q ss_pred cc-hhhh--hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHh
Q 020093 144 AD-YENF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL 220 (331)
Q Consensus 144 ~~-~~~~--~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~ 220 (331)
.. .... ....+..++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~ 174 (291)
T 2fbm_A 95 NNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKM 174 (291)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHH
Confidence 00 0000 11124567788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHH
Q 020093 221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDA 299 (331)
Q Consensus 221 vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~ 299 (331)
+|..+|++|++||+.|+|+||+++||||+|||++++.+++.++|++|+..||.+++.+|++++..... .....+.|...
T Consensus 175 vG~~~A~el~ltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~l~~~l~~e~~~ 254 (291)
T 2fbm_A 175 MGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNPIVLEECKALVRCNIKLELEQANERECEV 254 (291)
T ss_dssp HCHHHHHHHHTSCCEEEHHHHHHTTSCSEEECSTTSHHHHHHHHHHHTTSCHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHcCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999976432 23344556667
Q ss_pred HHHHhCChhHHHHHHHH-hcCCCCCCCCC
Q 020093 300 TLIFYGTEEGSEGKTAF-VERRRPDFLKF 327 (331)
Q Consensus 300 ~~~~~~s~d~~egi~af-lekr~p~f~~~ 327 (331)
+..++.++|++||+++| +|||+|+|+++
T Consensus 255 ~~~~~~s~d~~eg~~Af~~ekR~P~f~~~ 283 (291)
T 2fbm_A 255 LRKIWSSAQGIESMLKIPLLGYKAAFPPR 283 (291)
T ss_dssp HHHHHTSHHHHHHHHTC------------
T ss_pred HHHHhcCHHHHHHHHHHHhcCCCCCCCCC
Confidence 77889999999999999 99999999886
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-59 Score=432.42 Aligned_cols=258 Identities=25% Similarity=0.333 Sum_probs=226.9
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcC---CCc
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRD---GYA 144 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~---~~~ 144 (331)
|++|.+++. +++|++||||||+++|+||.+|+.+|.++|++++.|+++|+|||||.| ++||+|+|++++... ...
T Consensus 2 ~~~v~~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~~ 79 (275)
T 1dci_A 2 YESIQVTSA-QKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG-KMFTSGIDLMDMASDILQPPG 79 (275)
T ss_dssp CSSEEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCCBCHHHHHHHHTSCCC
T ss_pred CceEEEEEc-CCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcChHHHhhccccccc
Confidence 456888873 478999999999999999999999999999999999999999999999 699999999887431 000
Q ss_pred -chh----hhh--hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHH
Q 020093 145 -DYE----NFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIM 217 (331)
Q Consensus 145 -~~~----~~~--~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L 217 (331)
... ... ...+.+++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l 159 (275)
T 1dci_A 80 DDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRL 159 (275)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHG
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHH
Confidence 000 000 1124567788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCH-HHHHHHHHcCCCCCHHHHHhcCcccEecCC-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHH
Q 020093 218 SRLVGP-KKAREMWFLARFYTAEEAEKMGLVNTVVPL-EKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQT 294 (331)
Q Consensus 218 ~r~vG~-~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~ 294 (331)
++++|. .+|++|++||+.++|+||+++||||+|||+ +++.+++.++|++|+..||.+++.+|++++...+. .....+
T Consensus 160 ~r~vG~~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~ 239 (275)
T 1dci_A 160 PKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLD 239 (275)
T ss_dssp GGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHhCcHHHHHHHHHcCCCCCHHHHHHcCCcceecCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHH
Confidence 999999 999999999999999999999999999999 99999999999999999999999999999976542 334445
Q ss_pred HHHHHHHHHhCChhHHHHHHHHhcC---CCCCCCCC
Q 020093 295 LGGDATLIFYGTEEGSEGKTAFVER---RRPDFLKF 327 (331)
Q Consensus 295 ~~~~~~~~~~~s~d~~egi~aflek---r~p~f~~~ 327 (331)
.+...+..++.++|++||+++|+|| |+|+|+++
T Consensus 240 ~e~~~~~~~~~s~d~~eg~~af~ek~~~r~p~f~~~ 275 (275)
T 1dci_A 240 YMATWNMSMLQTQDIIKSVQAAMEKKDSKSITFSKL 275 (275)
T ss_dssp HHHHHHHHHTSSHHHHHHHHHHHTTCCGGGCCCCCC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 5666677788999999999999999 99999864
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-59 Score=434.07 Aligned_cols=261 Identities=28% Similarity=0.427 Sum_probs=202.7
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC-
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY- 143 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~- 143 (331)
...|+.|.+++ +++|++||||||+++|+||.+|+.+|.++|++++.|+++|+|||||.| ++||+|+|++++.....
T Consensus 5 ~~~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~ 81 (276)
T 2j5i_A 5 EGRWKTVKVEI--EDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAG-EAWTAGMDLKEYFREVDA 81 (276)
T ss_dssp TTCCSSEEEEE--ETEEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEEST-TCSBCCBCHHHHHHHHHH
T ss_pred cCCCceEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCCcCCcChhhHhhcccc
Confidence 34577899999 899999999999999999999999999999999999999999999999 69999999988642100
Q ss_pred cchhhhhh--hhHHHH-HHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHh
Q 020093 144 ADYENFGR--LNVLDL-QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL 220 (331)
Q Consensus 144 ~~~~~~~~--~~~~~l-~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~ 220 (331)
........ .....+ +..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ 161 (276)
T 2j5i_A 82 GPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADT 161 (276)
T ss_dssp SCTTHHHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHH
Confidence 00000000 011232 567789999999999999999999999999999999999999999999999999999999999
Q ss_pred hCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCc-hhHHHHHHHH
Q 020093 221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH-AGLQTLGGDA 299 (331)
Q Consensus 221 vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~-~~~~~~~~~~ 299 (331)
+|..+|++|+++|+.++|+||+++||||+|+|++++.+++.++|++|+..||.+++.+|++++...+.. ....+.+...
T Consensus 162 vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~ 241 (276)
T 2j5i_A 162 VGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARNLLEKNPVVLRAAKHGFKRCRELTWEQNEDYLYAK 241 (276)
T ss_dssp SCHHHHHHHHHHCCEEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred hCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999866532 2333334333
Q ss_pred HHHH--hCCh-hHHHHHHHHhcCC--CCCCCCCC
Q 020093 300 TLIF--YGTE-EGSEGKTAFVERR--RPDFLKFP 328 (331)
Q Consensus 300 ~~~~--~~s~-d~~egi~aflekr--~p~f~~~~ 328 (331)
+..+ +.++ |++||+++|+||| +|+|+++.
T Consensus 242 ~~~~~~~~s~~d~~eg~~AF~ekr~r~p~~~~~~ 275 (276)
T 2j5i_A 242 LDQSRLLDTEGGREQGMKQFLDDKSIKPGLQAYK 275 (276)
T ss_dssp HHHHHHHC--------------------------
T ss_pred HHHHhhcCChHHHHHHHHHHHhcccCCCCcccCC
Confidence 3333 6788 9999999999998 99999863
|
| >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-58 Score=427.53 Aligned_cols=252 Identities=24% Similarity=0.381 Sum_probs=219.3
Q ss_pred ccEEEE----EeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc
Q 020093 69 TDIIYE----KAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (331)
Q Consensus 69 ~~v~~~----~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~ 144 (331)
+.+.|+ . +++|++||||||+++|+||.+|+.+|.+++++++.|++||+|||||.| ++||+|+|++++......
T Consensus 7 ~~v~~~~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~ 83 (267)
T 3oc7_A 7 ALVDYAGPAAT--GGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTG-GTFCAGADLSEAGSGGSP 83 (267)
T ss_dssp SSEEEECHHHH--SSSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECS-SEEECCBC----------
T ss_pred cccCCCCccce--eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CceeCCcCchhhhhccCc
Confidence 568888 7 899999999999999999999999999999999999999999999999 599999999987521111
Q ss_pred chh----hhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHh
Q 020093 145 DYE----NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL 220 (331)
Q Consensus 145 ~~~----~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~ 220 (331)
... ......+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+ +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-~ 162 (267)
T 3oc7_A 84 SSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP-K 162 (267)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT-T
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH-H
Confidence 111 01122356788899999999999999999999999999999999999999999999999999999999999 9
Q ss_pred hCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHH
Q 020093 221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDA 299 (331)
Q Consensus 221 vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~ 299 (331)
+|..+|++|+++|+.++|+||+++||||+| ++++++++.+++++|+..||.+++.+|++++.... ......+.+...
T Consensus 163 vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v--~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~ 240 (267)
T 3oc7_A 163 LSARAAARYYLTGEKFDARRAEEIGLITMA--AEDLDAAIDQLVTDVGRGSPQGLAASKALTTAAVLERFDRDAERLAEE 240 (267)
T ss_dssp SCHHHHHHHHHHCCCBCHHHHHHHTSSSEE--CSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHcCCccCHHHHHHCCChhhh--hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999 88999999999999999999999999999998653 223344566677
Q ss_pred HHHHhCChhHHHHHHHHhcCCCCCCCC
Q 020093 300 TLIFYGTEEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 300 ~~~~~~s~d~~egi~aflekr~p~f~~ 326 (331)
+..++.++|++||+++|+|||+|+|++
T Consensus 241 ~~~~~~s~d~~eg~~af~ekr~p~f~~ 267 (267)
T 3oc7_A 241 SARLFVSDEAREGMLAFLEKRSPNWTS 267 (267)
T ss_dssp HHHHHTSHHHHHHHHHHHHTCCCTTC-
T ss_pred HHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence 788899999999999999999999974
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-59 Score=427.75 Aligned_cols=254 Identities=25% Similarity=0.333 Sum_probs=224.2
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
|+.|.+++. +++|++||||||+ +|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++ +.........
T Consensus 9 ~~~v~~~~~-~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~-~~~~~~~~~~ 84 (264)
T 1wz8_A 9 YPGLAFAWP-RPGVLEITFRGEK-LNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEG-GVFSAGGSFG-LIEEMRASHE 84 (264)
T ss_dssp CTTEEEEEE-ETTEEEEEECCSG-GGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGG-GCCBCCBCHH-HHHHHHHCHH
T ss_pred CCeEEEEEc-cCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCC-CCCcccCccc-cccccccchH
Confidence 355777763 5789999999999 9999999999999999999999999999999999 6999999998 6431000101
Q ss_pred h--hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHH
Q 020093 148 N--FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (331)
Q Consensus 148 ~--~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 225 (331)
. .....+++++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus 85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 164 (264)
T 1wz8_A 85 ALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAK 164 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHHH
Confidence 0 01123457788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHhC
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYG 305 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~ 305 (331)
|++|+++|+.++|+||+++||||+|||++++.+++.+++++|+..+|.+++.+|+.++..........+.|...+..++.
T Consensus 165 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~l~~e~~~~~~~~~ 244 (264)
T 1wz8_A 165 AKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEALHHTKHALNHWYRSFLPHFELSLALEFLGFS 244 (264)
T ss_dssp HHHHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHGGG
T ss_pred HHHHHHcCCCCCHHHHHHCCCceeecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999987654333344566667778889
Q ss_pred ChhHHHHHHHHhcCCCCCCC
Q 020093 306 TEEGSEGKTAFVERRRPDFL 325 (331)
Q Consensus 306 s~d~~egi~aflekr~p~f~ 325 (331)
++|++||+++|+|||+|+|+
T Consensus 245 s~d~~eg~~af~ekr~p~f~ 264 (264)
T 1wz8_A 245 GKELEEGLKALKEKRPPEFP 264 (264)
T ss_dssp SHHHHHHHHHHHTTSCCCCC
T ss_pred ChHHHHHHHHHHccCCCCCC
Confidence 99999999999999999995
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-59 Score=428.26 Aligned_cols=254 Identities=22% Similarity=0.356 Sum_probs=223.1
Q ss_pred CcccEEEEEeeCCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc
Q 020093 67 EFTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLn-rp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~ 145 (331)
.|++|.+++ +++|++|||| ||+++|+||.+|+.+|.++|++++.|+ +++|||+|.| ++||+|+|++++.......
T Consensus 3 ~~~~i~~~~--~~~v~~itln~rp~~~Nal~~~~~~~L~~al~~~~~d~-~r~vvltg~g-~~F~aG~Dl~~~~~~~~~~ 78 (261)
T 2gtr_A 3 RYRDIVVRK--QDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVG-SVFCCGLDFIYFIRRLTDD 78 (261)
T ss_dssp CCSSEEEEE--ETTEEEEEECCSSSSTTEECHHHHHHHHHHHHHHHHSS-CSCEEEEESS-SCSBCEECHHHHHHHHHHC
T ss_pred ccceEEEEE--eCCEEEEEECCCCccCCCCCHHHHHHHHHHHHHHhcCC-CEEEEEecCC-CccccccCchhhhhccccc
Confidence 467799999 8999999999 699999999999999999999999887 5999999999 6999999999864310000
Q ss_pred -hhhh--hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhC
Q 020093 146 -YENF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVG 222 (331)
Q Consensus 146 -~~~~--~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG 222 (331)
.... ....+.+++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG 158 (261)
T 2gtr_A 79 RKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMG 158 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcC
Confidence 0000 1112456778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHH
Q 020093 223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATL 301 (331)
Q Consensus 223 ~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~ 301 (331)
.++|++|++||+.++|+||+++||||+|+|++++.+++.+++++|+..||.+++.+|++++..... .....+.+...+.
T Consensus 159 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~ 238 (261)
T 2gtr_A 159 GASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLK 238 (261)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCcccccChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999976532 2333455666677
Q ss_pred HHhCChhHHHHHHHHhcCCCCCC
Q 020093 302 IFYGTEEGSEGKTAFVERRRPDF 324 (331)
Q Consensus 302 ~~~~s~d~~egi~aflekr~p~f 324 (331)
.++.++|++||+++|+|||+|+|
T Consensus 239 ~~~~s~d~~eg~~af~ekr~P~f 261 (261)
T 2gtr_A 239 KIWGSAQGMDSMLKYLQRKIDEF 261 (261)
T ss_dssp HHHHSTTTTHHHHHHHHHHHHC-
T ss_pred HHhCCHHHHHHHHHHHccCCCCC
Confidence 78889999999999999999998
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-59 Score=426.23 Aligned_cols=256 Identities=32% Similarity=0.495 Sum_probs=224.5
Q ss_pred cccEEEEEe-eCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 68 FTDIIYEKA-VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 68 ~~~v~~~~~-~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
|+.+.++.. ..++|++||||||+++|+||.+|+.+|.++|++++.|+++++|||+|.| ++||+|+|++++..... .
T Consensus 3 ~~~~~~~~~v~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~--~ 79 (260)
T 1mj3_A 3 FQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGE-KAFAAGADIKEMQNRTF--Q 79 (260)
T ss_dssp CSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SEEECCBCHHHHTTCCH--H
T ss_pred cccceeecccCcCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCC-CCccCCcChHhhhcccc--h
Confidence 455777651 1568999999999999999999999999999999999999999999999 69999999998643211 1
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
... ...+...+..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus 80 ~~~-~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 158 (260)
T 1mj3_A 80 DCY-SGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLA 158 (260)
T ss_dssp HHH-HC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHHH
T ss_pred HHH-HHHHHHHHHHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 111 1111123457889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYG 305 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~ 305 (331)
++|+++|+.++|+||+++||||+|+|++++.+++.+++++|+..+|.+++.+|++++...+. .....+.|...+..++.
T Consensus 159 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~ 238 (260)
T 1mj3_A 159 MEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFA 238 (260)
T ss_dssp HHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHcCCcCCHHHHHHcCCccEEeChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999987653 33445566677778899
Q ss_pred ChhHHHHHHHHhcCCCCCCCCC
Q 020093 306 TEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 306 s~d~~egi~aflekr~p~f~~~ 327 (331)
++|++||+++|++||+|+|+++
T Consensus 239 s~d~~egi~af~~kr~p~~~g~ 260 (260)
T 1mj3_A 239 TDDRREGMSAFVEKRKANFKDH 260 (260)
T ss_dssp SHHHHHHHHHHHTTSCCCCCCC
T ss_pred CHHHHHHHHHHHcCCCCCCCCC
Confidence 9999999999999999999864
|
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-58 Score=427.02 Aligned_cols=262 Identities=26% Similarity=0.374 Sum_probs=225.4
Q ss_pred CCCcccEEEEEe--eCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCC
Q 020093 65 GTEFTDIIYEKA--VGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG 142 (331)
Q Consensus 65 ~~~~~~v~~~~~--~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~ 142 (331)
+.+..+++++.. .+++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.|+++||+|+|++++....
T Consensus 4 ~~~~~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~ 83 (272)
T 1hzd_A 4 MKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMS 83 (272)
T ss_dssp ---CCSEEEEECCGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSC
T ss_pred ccCCCcEEEEecccccCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccC
Confidence 444456766541 267899999999999999999999999999999999999999999999867999999999875321
Q ss_pred CcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhC
Q 020093 143 YADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVG 222 (331)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG 222 (331)
. .........++.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 84 ~-~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 162 (272)
T 1hzd_A 84 S-SEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIG 162 (272)
T ss_dssp H-HHHHHHHHHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHC
T ss_pred h-HHHHHHHHHHHHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhC
Confidence 1 110111123457788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcH----HHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHH
Q 020093 223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKL----EQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGG 297 (331)
Q Consensus 223 ~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l----~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~ 297 (331)
..+|++|+++|+.++|+||+++||||+|+|++++ .+.+.+++++|+..||.+++.+|++++...+. .......|.
T Consensus 163 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~~~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~ 242 (272)
T 1hzd_A 163 MSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEE 242 (272)
T ss_dssp HHHHHHHHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCcceecChhhhhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999999999999999999998875 45788999999999999999999999976543 334445666
Q ss_pred HHHHHHhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 298 DATLIFYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 298 ~~~~~~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
..+..++.++|++||+++|+|||+|+|+++
T Consensus 243 ~~~~~~~~s~d~~egi~af~ekr~p~~~g~ 272 (272)
T 1hzd_A 243 ACYAQTIPTKDRLEGLLAFKEKRPPRYKGE 272 (272)
T ss_dssp HHHHTTTTCHHHHHHHHHHTTTSCCCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHhcCCCCCCCCC
Confidence 677778899999999999999999999874
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-58 Score=425.29 Aligned_cols=253 Identities=26% Similarity=0.378 Sum_probs=211.4
Q ss_pred CCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc
Q 020093 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~ 145 (331)
..|+.|.+++ +++|++||||||+++|+||.+|+.+|.+++++++.|+++ +|||||.| ++||+|+|++++.......
T Consensus 23 ~~~~~i~~~~--~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g-~~FcaG~Dl~~~~~~~~~~ 98 (280)
T 2f6q_A 23 MGFETLVVTS--EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNG-DYYSSGNDLTNFTDIPPGG 98 (280)
T ss_dssp EECSSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEEST-TCSBCCBCC----CCCTTH
T ss_pred CCCCeEEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCC-CCcccCCCHHHHhhcCcch
Confidence 3567799999 899999999999999999999999999999999999999 99999999 6999999999875422111
Q ss_pred hhhh---hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhC
Q 020093 146 YENF---GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVG 222 (331)
Q Consensus 146 ~~~~---~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG 222 (331)
.... ....+.+++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG 178 (280)
T 2f6q_A 99 VEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMS 178 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhC
Confidence 1110 0112456778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHHHH
Q 020093 223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATL 301 (331)
Q Consensus 223 ~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~ 301 (331)
..+|++|+++|+.++|+||+++||||+|+|++++.+++.+++++|+..+|.+++.+|+.++.... ......+.|.+.+.
T Consensus 179 ~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~ 258 (280)
T 2f6q_A 179 PAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQ 258 (280)
T ss_dssp HHHHHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCcceEECHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997653 22334455666777
Q ss_pred HHhCChhHHHHHHHHhcCCCC
Q 020093 302 IFYGTEEGSEGKTAFVERRRP 322 (331)
Q Consensus 302 ~~~~s~d~~egi~aflekr~p 322 (331)
.++.++|++||+++|+|||+|
T Consensus 259 ~~~~s~d~~eg~~af~ekR~p 279 (280)
T 2f6q_A 259 GRWLSDECTNAVVNFLSRKSK 279 (280)
T ss_dssp HHHTSHHHHC-----------
T ss_pred HHhCCHHHHHHHHHHHccCCC
Confidence 889999999999999999998
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-59 Score=427.71 Aligned_cols=248 Identities=27% Similarity=0.405 Sum_probs=198.2
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~ 144 (331)
+.+++.|.+++ +++|++||||||+++|+||.+|+.+|.++|++++.|++||+|||||.| ++||+|+|++++....
T Consensus 5 m~~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g-~~F~aG~Dl~~~~~~~-- 79 (256)
T 3pe8_A 5 MADSPVLLVDT--TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGAD-PVFCAGLDLKELGDTT-- 79 (256)
T ss_dssp ---CCSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEEST-TCSBCCBCTTTC------
T ss_pred CCCCCcEEEEE--ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCC-CCccCCcCHHHHhhhH--
Confidence 56677899999 999999999999999999999999999999999999999999999999 6999999999875320
Q ss_pred chhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 145 ~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
.+..+...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 80 --------~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 151 (256)
T 3pe8_A 80 --------ELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVG 151 (256)
T ss_dssp -------------CCCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHH
T ss_pred --------HHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHH
Confidence 112233567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHH--
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATL-- 301 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~-- 301 (331)
+|++|+++|+.++|+||+++||||+|+|++++.+++.++|++|+..||.+++.+|++++...+. .....+.|...+.
T Consensus 152 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~l~~e~~~~~~~ 231 (256)
T 3pe8_A 152 LARRMSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGNNQKAVRALLDSYHRIDALQTGGALWAEAEAARQW 231 (256)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTSCSCEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHCCCCeEEeCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876542 2233344444433
Q ss_pred -HHhCChhHHHHHHHHhcCCCCCCC
Q 020093 302 -IFYGTEEGSEGKTAFVERRRPDFL 325 (331)
Q Consensus 302 -~~~~s~d~~egi~aflekr~p~f~ 325 (331)
....++|++|++++|+|||+|.|.
T Consensus 232 ~~~~~~~d~~e~~~aflek~k~~~~ 256 (256)
T 3pe8_A 232 MRSTSGDDIAASRASVIERGRSQVR 256 (256)
T ss_dssp HHHC---------------------
T ss_pred hhcccchHHHHHHHHHHhccCccCC
Confidence 346788999999999999999995
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-58 Score=421.43 Aligned_cols=245 Identities=33% Similarity=0.499 Sum_probs=219.5
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC-cchhhhhhhh-HH
Q 020093 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-ADYENFGRLN-VL 155 (331)
Q Consensus 78 ~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~-~~~~~~~~~~-~~ 155 (331)
+++|++||||||+++|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++..... .......... ++
T Consensus 6 ~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 84 (253)
T 1uiy_A 6 KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRG-KAFSAGADLAFLERVTELGAEENYRHSLSLM 84 (253)
T ss_dssp CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred eCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCcccCcChHHHHhcccCCchhHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999 69999999998753200 0111111112 56
Q ss_pred HHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCC
Q 020093 156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF 235 (331)
Q Consensus 156 ~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~ 235 (331)
+++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|+|++|..+|++|+++|+.
T Consensus 85 ~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~a~~l~ltg~~ 163 (253)
T 1uiy_A 85 RLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAVGEKAAKDLLLTGRL 163 (253)
T ss_dssp HHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHSCHHHHHHHHHHCCE
T ss_pred HHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHhCHHHHHHHHHhCCc
Confidence 778899999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred CCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCChhHHHHHH
Q 020093 236 YTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTEEGSEGKT 314 (331)
Q Consensus 236 ~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~ 314 (331)
++|+||+++||||+|+|++++.+++.+++++|+..||.+++.+|+.++...+. .....+.|...+..++.++|++||++
T Consensus 164 ~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~ 243 (253)
T 1uiy_A 164 VEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIR 243 (253)
T ss_dssp EEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHH
T ss_pred cCHHHHHHCCCcceecChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986653 33445566677778899999999999
Q ss_pred HHhcCCCCCC
Q 020093 315 AFVERRRPDF 324 (331)
Q Consensus 315 aflekr~p~f 324 (331)
+|++||+|+|
T Consensus 244 af~~kr~p~~ 253 (253)
T 1uiy_A 244 AFFEKRPPRF 253 (253)
T ss_dssp HHHTTSCCCC
T ss_pred HHhCcCCCCC
Confidence 9999999998
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-57 Score=416.97 Aligned_cols=247 Identities=18% Similarity=0.220 Sum_probs=210.3
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
..|.+++ +++|++||||||+++|+||.+|+.+|.++++.+++ +++|+|||+|.| ++||+|+|++++...... ...
T Consensus 7 ~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~-~~~ 81 (254)
T 3isa_A 7 LPLAIER--RPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAG-RNFSAGFDFTDYETQSEG-DLL 81 (254)
T ss_dssp CSEEEEE--CSSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEEST-TCSCCCBCCTTCTTSCHH-HHH
T ss_pred ceEEEEE--ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCC-CceeeCcChHHhhccCch-hHH
Confidence 3499999 99999999999999999999999999999999987 589999999999 699999999987543211 111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
.....+..++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++++|++++|..+|++
T Consensus 82 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p---g~~~l~~~vG~~~A~~ 158 (254)
T 3isa_A 82 LRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRDIVGADQALS 158 (254)
T ss_dssp HHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCC---SHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccH---HHHHHHHHcCHHHHHH
Confidence 1112345778899999999999999999999999999999999999999999999999997 4899999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHhCChh
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGTEE 308 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~s~d 308 (331)
|+++|+.++|+||+++||||+|||++++.+++.+++++++..||.+++.+|++++... .+.+...+..++.++|
T Consensus 159 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~------~~~e~~~~~~~~~s~d 232 (254)
T 3isa_A 159 ILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALDPATRATLHRVLRDDH------DDADLAALARSAAQPG 232 (254)
T ss_dssp HHTTTCEEEHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTSCHHHHHHHHHHHSCCC------HHHHHHHHHHHHHSTT
T ss_pred HHHhCCCCcHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh------HHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999999999999999999999999999999995321 2334455667788999
Q ss_pred HHHHHHHHhcCCCCCCCCCCC
Q 020093 309 GSEGKTAFVERRRPDFLKFPR 329 (331)
Q Consensus 309 ~~egi~aflekr~p~f~~~~~ 329 (331)
++||+++|+|||+|.|+..|+
T Consensus 233 ~~egi~af~ekr~p~~~~~~~ 253 (254)
T 3isa_A 233 FKARIRDYLAQPAAEGHHHHH 253 (254)
T ss_dssp HHHHHHHHHHC----------
T ss_pred HHHHHHHHHhcCCCCCCCCCC
Confidence 999999999999999998764
|
| >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-57 Score=432.66 Aligned_cols=256 Identities=20% Similarity=0.287 Sum_probs=222.9
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCC--Ccch
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG--YADY 146 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~--~~~~ 146 (331)
+.|.+++ +++|++||||||+++|+||.+|+.+|.++|+.++.|++||+|||||.|+++||+|+|++++.... ....
T Consensus 6 ~~v~~~~--~~~v~~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~~ 83 (363)
T 3bpt_A 6 EEVLLGK--KGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKI 83 (363)
T ss_dssp CSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCC
T ss_pred cceEEEE--ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccHH
Confidence 4588998 89999999999999999999999999999999999999999999999867999999999874311 0000
Q ss_pred hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 147 ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
........+.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. +|
T Consensus 84 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~-~a 162 (363)
T 3bpt_A 84 APVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGK-LG 162 (363)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTT-HH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHH-HH
Confidence 00111123467788999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHH----------------------------------------------
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQET---------------------------------------------- 260 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a---------------------------------------------- 260 (331)
++|++||+.|+|+||+++||||+|||++++.+.+
T Consensus 163 ~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~f 242 (363)
T 3bpt_A 163 YFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCF 242 (363)
T ss_dssp HHHHHHCCCEETHHHHHTTSCSEECCGGGHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHHHHHHHT
T ss_pred HHHHHcCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHHHHh
Confidence 9999999999999999999999999999886532
Q ss_pred -----H---------------HHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCChhHHHHHHHHh-c
Q 020093 261 -----I---------------KWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTEEGSEGKTAFV-E 318 (331)
Q Consensus 261 -----~---------------~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~afl-e 318 (331)
. +++++|++.||.+++.+|++++..... ..+....|......++.++|++||++||+ +
T Consensus 243 ~~~~~~ei~~al~~~~~~~a~~~a~~la~~sP~al~~~k~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGv~Afl~e 322 (363)
T 3bpt_A 243 SANTVEEIIENLQQDGSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMRGHDFHEGVRAVLID 322 (363)
T ss_dssp TSSSHHHHHHHHHHHCCHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSSHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHhccChHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCccHHhhhhheeeC
Confidence 2 578899999999999999999987653 34445666677777889999999999999 8
Q ss_pred C-CCCCCCCC
Q 020093 319 R-RRPDFLKF 327 (331)
Q Consensus 319 k-r~p~f~~~ 327 (331)
| |+|+|++.
T Consensus 323 K~r~P~~~~~ 332 (363)
T 3bpt_A 323 KDQSPKWKPA 332 (363)
T ss_dssp CCCCCCCSSC
T ss_pred CCCCCCCCCC
Confidence 8 99999875
|
| >3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-57 Score=422.13 Aligned_cols=247 Identities=24% Similarity=0.257 Sum_probs=220.3
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
+.|.+++ +++|++||||||+++|+||.+|+.+|.++|+.++.|+++|+|||||.| ++||+|+|++++..........
T Consensus 28 ~~v~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 104 (276)
T 3rrv_A 28 TEIDVRA--DGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAG-RAFSAGGDFGYLKELSADADLR 104 (276)
T ss_dssp TTEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCHHHHHHHHHCHHHH
T ss_pred CeEEEEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CcccCCcCHHHHhhcccchHHH
Confidence 4699999 999999999999999999999999999999999999999999999999 6999999999875321110000
Q ss_pred -hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHH
Q 020093 149 -FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (331)
Q Consensus 149 -~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~ 227 (331)
.....++.++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|+
T Consensus 105 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~ 184 (276)
T 3rrv_A 105 AKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAK 184 (276)
T ss_dssp HHHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCHHHHH
Confidence 0112345788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCC
Q 020093 228 EMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGT 306 (331)
Q Consensus 228 ~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s 306 (331)
+|+++|+.++|+||+++||||+|+ +++.+++.++|++|+..||.+++.+|++++...+. .....+.+...+..++.+
T Consensus 185 ellltG~~i~A~eA~~~GLv~~vv--~~l~~~a~~~A~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s 262 (276)
T 3rrv_A 185 EYALTGTRISAQRAVELGLANHVA--DDPVAEAIACAKKILELPQQAVESTKRVLNIHLERAVLASLDYALSAESQSFVT 262 (276)
T ss_dssp HHHHHCCCEEHHHHHHHTSCSEEE--SSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999 89999999999999999999999999999976542 233445566667788999
Q ss_pred hhHHHHHHHHhcCC
Q 020093 307 EEGSEGKTAFVERR 320 (331)
Q Consensus 307 ~d~~egi~aflekr 320 (331)
+|++||+++|+|||
T Consensus 263 ~d~~eg~~AF~ekR 276 (276)
T 3rrv_A 263 EDFRSIVTKLADKN 276 (276)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999999997
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-57 Score=415.89 Aligned_cols=247 Identities=20% Similarity=0.221 Sum_probs=199.6
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEe-CCCCceeccccccchhcCCCcchhhh
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTG-KGTEAFCSGGDQALRTRDGYADYENF 149 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g-~g~~~FcaG~Dl~~~~~~~~~~~~~~ 149 (331)
|.+++ +++|++||||||+++|+||.+|+.+|.++|++++.|+++++||||| .| ++||+|+|++++...........
T Consensus 2 v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g-~~F~aG~Dl~~~~~~~~~~~~~~ 78 (250)
T 2a7k_A 2 VFEEN--SDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAE-RSFSAGGDFNEVKQLSRSEDIEE 78 (250)
T ss_dssp EEEEE--ETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTT-SCSBCBSCHHHHHTC-CHHHHHH
T ss_pred eEEEe--eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCC-CCccCCcCHHHHhhcCchhhHHH
Confidence 66788 8999999999999999999999999999999999999999999999 88 69999999998754221110011
Q ss_pred hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHH
Q 020093 150 GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREM 229 (331)
Q Consensus 150 ~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l 229 (331)
....+++++..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|.++|++|
T Consensus 79 ~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~l 157 (250)
T 2a7k_A 79 WIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEI 157 (250)
T ss_dssp HHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHHHHHHHH
Confidence 11234577889999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCChh
Q 020093 230 WFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTEE 308 (331)
Q Consensus 230 ~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d 308 (331)
+++|+.++|+||+++||||+|+|++++.+++.+++++|+..||.+++.+|+.++...+. .....+.|...+..++.++|
T Consensus 158 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d 237 (250)
T 2a7k_A 158 IYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAFINTKRAVNKPFIHLLEQTRDASKAVHKAAFQARD 237 (250)
T ss_dssp HHHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHcCCcccHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999999999999999999999999999999999999999876432 22334455556667788999
Q ss_pred HHHHHHHHhcCCC
Q 020093 309 GSEGKTAFVERRR 321 (331)
Q Consensus 309 ~~egi~aflekr~ 321 (331)
++||+++|+|||+
T Consensus 238 ~~eg~~af~ekr~ 250 (250)
T 2a7k_A 238 AQGHFKNVLGKKY 250 (250)
T ss_dssp -------------
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999985
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-57 Score=420.88 Aligned_cols=250 Identities=20% Similarity=0.255 Sum_probs=224.3
Q ss_pred CCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc
Q 020093 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~ 145 (331)
.+|+.|.+++ +++|++||||||+ +|+||.+|+.+|.++++.++.|++||+|||||.|+++||+|+||+++.......
T Consensus 5 ~~~~~v~~~~--~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~ 81 (289)
T 3h0u_A 5 ASYETIKARL--DGTVLSATFNAPP-MNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEA 81 (289)
T ss_dssp CCCSSEEEEE--ETTEEEEEECCTT-TCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHH
T ss_pred CCCCeEEEEE--ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcch
Confidence 4578899999 8999999999998 799999999999999999999999999999999976777888999875321100
Q ss_pred hhh--hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCC-ceeecCCCCccCCCCchHHHHHHHhhC
Q 020093 146 YEN--FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVG 222 (331)
Q Consensus 146 ~~~--~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~L~r~vG 222 (331)
... .....+..++.+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++|
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG 161 (289)
T 3h0u_A 82 AKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLG 161 (289)
T ss_dssp HTTSSTTCCSHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHhC
Confidence 000 11224567889999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHH
Q 020093 223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLI 302 (331)
Q Consensus 223 ~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~ 302 (331)
..+|++|+++|+.++|+||+++||||+|||++++.+++.++|++|+..||.+++.+|++++..........+.|...+..
T Consensus 162 ~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a~~~~K~~l~~~~~~l~~~l~~e~~~~~~ 241 (289)
T 3h0u_A 162 RGRALEAVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSGFPRDALIAAKSAINAISLPAPAEVRADAALFQQ 241 (289)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998766444555677777888
Q ss_pred HhCChhHHHHHHHHhc
Q 020093 303 FYGTEEGSEGKTAFVE 318 (331)
Q Consensus 303 ~~~s~d~~egi~afle 318 (331)
++.++|++||+++|+|
T Consensus 242 ~~~s~d~~egi~AFle 257 (289)
T 3h0u_A 242 LVRGEKVQQRTAELFK 257 (289)
T ss_dssp HTTSHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHhC
Confidence 9999999999999999
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-57 Score=415.99 Aligned_cols=252 Identities=17% Similarity=0.242 Sum_probs=213.3
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
..|.+++ +++|++||||||+ +|+||.+|+.+|.++|++++.|+++++|||+|.|+++||+|+|++++..... ....
T Consensus 5 v~v~~~~--~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~-~~~~ 80 (260)
T 1sg4_A 5 VLVEPDA--GAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSP-AHYA 80 (260)
T ss_dssp EEEEEET--TTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCH-HHHH
T ss_pred EEEEEEe--cCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccCH-HHHH
Confidence 3466666 8999999999997 6999999999999999999999999999999994479999999998753211 1101
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEe--CCceeecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA--DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~--~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
.....++.++..|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|++++|++++|..+|
T Consensus 81 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 160 (260)
T 1sg4_A 81 GYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAA 160 (260)
T ss_dssp HHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHH
Confidence 111234577889999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYG 305 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~ 305 (331)
++|+++|+.++|+||+++||||+|+|++++.+++.++|++|+..||.+++.+|+.++..... .....+.|...+..++.
T Consensus 161 ~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~ 240 (260)
T 1sg4_A 161 ERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNFVSFIS 240 (260)
T ss_dssp HHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred HHHHHcCCcCCHHHHHHcCCCCEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999875432 22233556667778899
Q ss_pred ChhHHHHHHHHhcCCCCCC
Q 020093 306 TEEGSEGKTAFVERRRPDF 324 (331)
Q Consensus 306 s~d~~egi~aflekr~p~f 324 (331)
++|++||+++|+|||+|+.
T Consensus 241 s~d~~eg~~af~ekr~~~~ 259 (260)
T 1sg4_A 241 KDSIQKSLQMYLERLKEEK 259 (260)
T ss_dssp SHHHHHHHTC---------
T ss_pred CHHHHHHHHHHHHhhcccC
Confidence 9999999999999999874
|
| >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-57 Score=439.40 Aligned_cols=258 Identities=19% Similarity=0.251 Sum_probs=225.6
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc--
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA-- 144 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~-- 144 (331)
.|++|.+++ +++|++||||||+++|+||.+|+.+|.++|+.++.|++||+|||||.|+++||+|+|++++......
T Consensus 40 ~~~~v~~~~--~~~V~~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~ 117 (407)
T 3ju1_A 40 VFQTLATAS--GKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAK 117 (407)
T ss_dssp EEEEEECTT--SCEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHT
T ss_pred ccceEEEEE--ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhcccccc
Confidence 467788888 9999999999999999999999999999999999999999999999997799999999987532100
Q ss_pred --chhhh--hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHh
Q 020093 145 --DYENF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL 220 (331)
Q Consensus 145 --~~~~~--~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~ 220 (331)
..... .....+.++.+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|+
T Consensus 118 ~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl 197 (407)
T 3ju1_A 118 GQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRM 197 (407)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhh
Confidence 00111 11123567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHH---H----------------HHH-------------------
Q 020093 221 VGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQ---E----------------TIK------------------- 262 (331)
Q Consensus 221 vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~---~----------------a~~------------------- 262 (331)
+| .+|++|++||++|+|+||+++||||+|||+++|.+ + +.+
T Consensus 198 ~g-~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~L~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~l~ 276 (407)
T 3ju1_A 198 PG-KMGLFLGLTAYHMNAADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLA 276 (407)
T ss_dssp ST-THHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHSSCCCSCHHHHHHHHHHHHHHHHTTCSSCCCCCHHH
T ss_pred hH-HHHHHHHHcCCcCcHHHHHHCCCccEEcCHHHHHHHHHHHhcccccccccchhHHHHHHHHHhhhhccccCCchhHH
Confidence 99 89999999999999999999999999999998877 3 322
Q ss_pred -----------------------------H----HHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHHHHHHhCChh
Q 020093 263 -----------------------------W----SREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATLIFYGTEE 308 (331)
Q Consensus 263 -----------------------------~----a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~s~d 308 (331)
| +++|+..||.+++.+|++++.... ...+..+.|......++.++|
T Consensus 277 ~~~~~I~~~f~~sv~~i~~~L~~~~~~~~~a~~~a~~la~~sP~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D 356 (407)
T 3ju1_A 277 ESQEMIDRLMAGSLTDIVTRMSTLSTDEAWLSKACATMLAGSPISWHLAYIQTQLGTKLSLAQCFKWELTVSVNVCAKGD 356 (407)
T ss_dssp HTHHHHHHHTCSCHHHHHHHHHHCCCSCHHHHHHHHHHHHSCHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccccHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHH
Confidence 2 478999999999999999998765 344556777777888888999
Q ss_pred HHHHHHHHh-cC-CCCCCCCC
Q 020093 309 GSEGKTAFV-ER-RRPDFLKF 327 (331)
Q Consensus 309 ~~egi~afl-ek-r~p~f~~~ 327 (331)
++||++||+ +| |+|+|++.
T Consensus 357 ~~EGvrAflidKdr~P~w~~~ 377 (407)
T 3ju1_A 357 FCEGVRALLIDKDKQPKWQFA 377 (407)
T ss_dssp HHHHHHHHTTSCCCCCCCSSS
T ss_pred HHHHHHHHHhcCCcCCCCCCC
Confidence 999999999 88 99999875
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-56 Score=415.13 Aligned_cols=248 Identities=25% Similarity=0.405 Sum_probs=213.1
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~ 144 (331)
..+++.|.+++ +++|++||||||++ |+||.+|+.+|.++|+.++.|++||+|||||.| ++||+|+|++++......
T Consensus 20 ~~m~~~v~~~~--~~~Va~ItlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~ 95 (277)
T 4di1_A 20 GSMNEFVSVVA--DQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGH-EIFSAGDDMPELRTLNAP 95 (277)
T ss_dssp ---CCSEEEEE--ETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SCSBCCBCHHHHHTCCHH
T ss_pred CCCCceEEEEE--ECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCEecCcCcccccccChH
Confidence 34456799999 99999999999999 999999999999999999999999999999998 699999999988643211
Q ss_pred chhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 145 ~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
........+..++.+|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..
T Consensus 96 -~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~ 174 (277)
T 4di1_A 96 -EADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSS 174 (277)
T ss_dssp -HHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHH
T ss_pred -HHHHHHHHHHHHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHH
Confidence 1111122345788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHH
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIF 303 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~ 303 (331)
+|++|+++|+.++|+||+++||||+|+|++++.+++.++|++|+..||.+++.+|++++...+. .....+.|...+..+
T Consensus 175 ~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~ 254 (277)
T 4di1_A 175 RAKELVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYLECPPRALAAAKAVINDVFELEATERAAAERRRYVEL 254 (277)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHTTTTSCHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987653 334456667777778
Q ss_pred hCChhHHHHHHHHhcCCCCC--CCCC
Q 020093 304 YGTEEGSEGKTAFVERRRPD--FLKF 327 (331)
Q Consensus 304 ~~s~d~~egi~aflekr~p~--f~~~ 327 (331)
+.++ |||+|+ |+++
T Consensus 255 ~~s~----------ekR~P~~~f~g~ 270 (277)
T 4di1_A 255 FAAG----------QRGPDGRGPGGG 270 (277)
T ss_dssp TSGG----------GC----------
T ss_pred hcCc----------ccCCCcCcCCCC
Confidence 8777 999999 9885
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-57 Score=418.99 Aligned_cols=247 Identities=21% Similarity=0.222 Sum_probs=196.0
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
.++.|.+++ +++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||.|+ .||+|+|++++........
T Consensus 10 ~~~~v~~~~--~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~-~F~aG~Dl~~~~~~~~~~~ 86 (258)
T 3lao_A 10 GPGRVTREQ--RGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGE-HFTAGLDLMELAPKLAASG 86 (258)
T ss_dssp SSCCEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSS-CSBCCBCHHHHGGGCBTTB
T ss_pred CCCeEEEEE--ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCC-CeecCcCHHHHhhccchhh
Confidence 456799999 9999999999999999999999999999999999999999999999995 7999999998754322111
Q ss_pred hhhhhhhHHHHHHHH-HcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHH
Q 020093 147 ENFGRLNVLDLQVQI-RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (331)
Q Consensus 147 ~~~~~~~~~~l~~~l-~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 225 (331)
... ...+.+++..+ .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus 87 ~~~-~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 165 (258)
T 3lao_A 87 FRY-PDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTD 165 (258)
T ss_dssp CCC-CTTCCCTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCHHH
T ss_pred HHH-HHHHHHHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 111 11122345677 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHh
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFY 304 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~ 304 (331)
|++|+++|+.++|+||+++||||+|+|++++.+++.++|++|++.||.+++.+|++++...+. .....+.|...+..++
T Consensus 166 A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~ 245 (258)
T 3lao_A 166 AMRYILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERIARAAPLAVRAALQSAFQGRDEGDDAALSRVNESLAALI 245 (258)
T ss_dssp HHHHHTTCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTC------------------
T ss_pred HHHHHHcCCCCCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999987643 3344456667777888
Q ss_pred CChhHHHHHHHHh
Q 020093 305 GTEEGSEGKTAFV 317 (331)
Q Consensus 305 ~s~d~~egi~afl 317 (331)
.++|++||+++|+
T Consensus 246 ~s~d~~eg~~AF~ 258 (258)
T 3lao_A 246 GSEDVREGVLAMV 258 (258)
T ss_dssp -------------
T ss_pred CCHHHHHHHHhhC
Confidence 9999999999996
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-55 Score=406.79 Aligned_cols=247 Identities=22% Similarity=0.284 Sum_probs=204.0
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCC---Ccc
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDG---YAD 145 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~---~~~ 145 (331)
+.+.++.. +++|++||||||++ |+||.+|+.+|.++|+.++.|+++|+|||||.| ++||+|+|++++.... ...
T Consensus 6 ~~~~~~~~-~~~v~~itlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~ 82 (263)
T 3l3s_A 6 DGLLGEVL-SEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPG-RIFCAGHDLKEIGRHRADPDEG 82 (263)
T ss_dssp --CEEEEE-SSSEEEEEECSTTT-CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCS-SEEECCSCSCCCCC-----CCS
T ss_pred cceEEEEe-eCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccCCcChHHHhhcccccccc
Confidence 34555553 89999999999999 999999999999999999999999999999999 7999999999875421 011
Q ss_pred hhhh--hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCH
Q 020093 146 YENF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP 223 (331)
Q Consensus 146 ~~~~--~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 223 (331)
.... ....++.++.+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|+|++|.
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~-~~g~~~~l~r~vG~ 161 (263)
T 3l3s_A 83 RAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGF-CTTPAVAVSRVIGR 161 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSC-CHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCC-CccHHHHHHHHcCH
Confidence 1111 11234678889999999999999999999999999999999999999999999999999 56789999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHH
Q 020093 224 KKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLI 302 (331)
Q Consensus 224 ~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~ 302 (331)
.+|++|+++|+.++|+||+++||||+|||++++.+++.++|++|+..||.+++.+|++++...+. .....+.+...+..
T Consensus 162 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~ 241 (263)
T 3l3s_A 162 RAVTEMALTGATYDADWALAAGLINRILPEAALATHVADLAGALAARNQAPLRRGLETLNRHLELPLEQAYALATPVMVE 241 (263)
T ss_dssp HHHHHHHHHCCEEEHHHHHHHTSSSEECCHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987653 34445667777888
Q ss_pred HhCChhHHHHHHHHhcC
Q 020093 303 FYGTEEGSEGKTAFVER 319 (331)
Q Consensus 303 ~~~s~d~~egi~aflek 319 (331)
++.++|++||++||.+.
T Consensus 242 ~~~s~d~~Eg~~Af~~~ 258 (263)
T 3l3s_A 242 HFMDPGRRHLDWIDEGH 258 (263)
T ss_dssp HHC--------------
T ss_pred HhCCHHHHHHHHHhhcc
Confidence 99999999999999875
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-56 Score=420.94 Aligned_cols=259 Identities=24% Similarity=0.289 Sum_probs=211.6
Q ss_pred CCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc
Q 020093 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~ 145 (331)
..|++|.+++ +++|++||||||+++|+||.+|+.+|.++|++++.|++||+|||+|.| ++||+|+||+++.......
T Consensus 32 ~~~~~i~~e~--~~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G-~~FcaG~Dl~~~~~~~~~~ 108 (333)
T 3njd_A 32 DNLKTMTYEV--TDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRG-EGFCAGFDLSAYAEGSSSA 108 (333)
T ss_dssp TSCSSEEEEE--ETTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEEST-TSSBCCBC-----------
T ss_pred CCCCeEEEEE--ECCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCC-CceecCcCHHHHhhccccc
Confidence 4678899999 999999999999999999999999999999999999999999999999 6999999999875321110
Q ss_pred h----------------------------hh-hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCc
Q 020093 146 Y----------------------------EN-FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNA 196 (331)
Q Consensus 146 ~----------------------------~~-~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a 196 (331)
. .. .....+..++..|.++||||||+|||+|+|||++|+++||+|||++++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a 188 (333)
T 3njd_A 109 GGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADA 188 (333)
T ss_dssp ----CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTC
T ss_pred ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCCC
Confidence 0 00 001123456678999999999999999999999999999999999999
Q ss_pred eeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHH
Q 020093 197 IFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIR 276 (331)
Q Consensus 197 ~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~ 276 (331)
+|++||+++|++|++| +|++++|.++|++|++||+.|+|+||+++||||+|||+++|.+++.++|++|+..||.+++
T Consensus 189 ~f~~pe~~lG~~P~~g---~l~~~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~ia~~~~~al~ 265 (333)
T 3njd_A 189 KIGYPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAAMPVNQLI 265 (333)
T ss_dssp EEECGGGGTTCCCTTC---CHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSSSBCCCGGGHHHHHHHHHHHHHTSCHHHHH
T ss_pred eeechhhceeccCHHH---HHHHHHHHHHHHHHHhcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999875 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccccC--chhHHHHHHHHHHHH--------hCChhHHHHHHHHhcCCCCCCCCCCCC
Q 020093 277 VLKSALNAVDDG--HAGLQTLGGDATLIF--------YGTEEGSEGKTAFVERRRPDFLKFPRR 330 (331)
Q Consensus 277 ~~K~~l~~~~~~--~~~~~~~~~~~~~~~--------~~s~d~~egi~aflekr~p~f~~~~~~ 330 (331)
.+|++++...+. ......+........ +......+|+++|+|||+|.|.+..+.
T Consensus 266 ~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~f~~~~~~~g~~a~~ekR~~~f~~~~~~ 329 (333)
T 3njd_A 266 MAKLACNTALLNQGVATSQMVSTVFDGIARHTPEGHAFVATAREHGFREAVRRRDEPMGDHGRR 329 (333)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHCHHHHHHHHHGGGTCCTTC
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChHHHHHHHHhhhHHHHHHHHhcCCCCCCcccC
Confidence 999999987642 111111111111111 112234799999999999999997654
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-55 Score=409.53 Aligned_cols=247 Identities=15% Similarity=0.146 Sum_probs=214.2
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCC-c-
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGY-A- 144 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~-~- 144 (331)
.|+.|.+++ +++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.| ++||+|+|++++..... .
T Consensus 7 ~~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~~~ 83 (280)
T 1pjh_A 7 QNEKISYRI--EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSG-RFFSSGADFKGIAKAQGDDT 83 (280)
T ss_dssp CBTTEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCCBCHHHHHC------
T ss_pred cCCceEEEE--ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCC-CCccCCcCHHHHhhcccccc
Confidence 467899999 899999999999999999999999999999999999999999999999 69999999998743110 0
Q ss_pred --chh---hhh-h--hhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEe-CCceeecCCCCccCCCCchHHH
Q 020093 145 --DYE---NFG-R--LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSS 215 (331)
Q Consensus 145 --~~~---~~~-~--~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~ 215 (331)
... .+. . ...+.++..|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~ 163 (280)
T 1pjh_A 84 NKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTV 163 (280)
T ss_dssp -CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHH
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHH
Confidence 000 010 0 112467788999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCC-----cHHHHHH-HHHHHHhccCHHHHHHHHHHHHccccCc
Q 020093 216 IMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLE-----KLEQETI-KWSREILRNSPTAIRVLKSALNAVDDGH 289 (331)
Q Consensus 216 ~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~-----~l~~~a~-~~a~~la~~~~~a~~~~K~~l~~~~~~~ 289 (331)
+|+|++|.++|++|++||+.++|+||+++||||+|||++ ++.+++. +++++|+..||.+++.+|++++.....
T Consensus 164 ~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~~a~~~~a~~la~~~~~a~~~~K~~l~~~~~~- 242 (280)
T 1pjh_A 164 SLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNHID- 242 (280)
T ss_dssp HHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTTHH-
T ss_pred HHHHHhCHHHHHHHHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhHHH-
Confidence 999999999999999999999999999999999999986 7888885 999999999999999999999975421
Q ss_pred hhHHHHHHHHHHHHhCChhHHHHHHHHhcCCCC-CCCCC
Q 020093 290 AGLQTLGGDATLIFYGTEEGSEGKTAFVERRRP-DFLKF 327 (331)
Q Consensus 290 ~~~~~~~~~~~~~~~~s~d~~egi~aflekr~p-~f~~~ 327 (331)
.++ ...++|++|++++|++||+| .|..+
T Consensus 243 ----~l~------~~~~~d~~e~~~af~~kr~~e~~~~f 271 (280)
T 1pjh_A 243 ----AFN------KANSVEVNESLKYWVDGEPLKRFRQL 271 (280)
T ss_dssp ----HHH------HHHHHHHHHHHHHHHHTHHHHHHTC-
T ss_pred ----HHH------HhhhHHHHHHHHHHhCCccHHHHHHH
Confidence 111 12478999999999999998 68765
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-55 Score=400.16 Aligned_cols=238 Identities=24% Similarity=0.339 Sum_probs=212.1
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhh
Q 020093 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (331)
Q Consensus 71 v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 150 (331)
+.+++ +++|++||||||+++|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++....... .
T Consensus 5 ~~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~---~- 77 (243)
T 2q35_A 5 QLTEL--GNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYG-NYFSSGASKEFLIRKTRGE---V- 77 (243)
T ss_dssp EEEEE--ETTEEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TEEECBSCHHHHHHHHTTC---C-
T ss_pred EEEEe--eCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCeeCCCChHHHhhccchh---h-
Confidence 45667 899999999999999999999999999999999999999999999999 6999999998764311000 0
Q ss_pred hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHH
Q 020093 151 RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMW 230 (331)
Q Consensus 151 ~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ 230 (331)
..++++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.++|++|+
T Consensus 78 --~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ 155 (243)
T 2q35_A 78 --EVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEMI 155 (243)
T ss_dssp --CCCCCHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHHH
T ss_pred --HHHHHHHHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHHH
Confidence 113456789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCChhH
Q 020093 231 FLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTEEG 309 (331)
Q Consensus 231 ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~ 309 (331)
++|+.++|+||+++||||+|+|++++.+++.+++++|+..+|.+++.+|+.++..... .....+.+...+..++.++|+
T Consensus 156 ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~ 235 (243)
T 2q35_A 156 YTGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKIAKSPRLSLVALKQHLSADIKAKFPEAIKKELEIHQVTFNQPEI 235 (243)
T ss_dssp HHCCCEEHHHHHHTTCSSCEECHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTH
T ss_pred HcCCCCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999999999999999999999999999999999999876532 223345566667778899999
Q ss_pred HHHHHHHh
Q 020093 310 SEGKTAFV 317 (331)
Q Consensus 310 ~egi~afl 317 (331)
+||+++|+
T Consensus 236 ~eg~~a~~ 243 (243)
T 2q35_A 236 ASRIQQEF 243 (243)
T ss_dssp HHHHHTTC
T ss_pred HHHHhhcC
Confidence 99999874
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-54 Score=394.67 Aligned_cols=242 Identities=21% Similarity=0.247 Sum_probs=209.6
Q ss_pred CCcccEEEEEeeCC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc
Q 020093 66 TEFTDIIYEKAVGE-GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (331)
Q Consensus 66 ~~~~~v~~~~~~~~-~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~ 144 (331)
..|+.|.+++ ++ +|++||||||+++|+||.+|+.+|.++|++++.|+++|+|||+|.| ++||+|+|++++......
T Consensus 20 ~~~~~i~~~~--~~~~Va~ItLnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~FcaG~Dl~~~~~~~~~ 96 (263)
T 2j5g_A 20 TKYENLHFHR--DENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSG-DAWMAEIDFPSLGDVTNP 96 (263)
T ss_dssp GSCTTEEEEE--CTTCEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TEEECEECSGGGCCTTSH
T ss_pred CCCCeEEEEE--cCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCC-CCcccCcCHHHHhccCCH
Confidence 3456799999 88 9999999999999999999999999999999999999999999999 699999999987532111
Q ss_pred chhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeec-CCCCccCCCCchHHHHHHHhhCH
Q 020093 145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ-TGPKVGSFDAGYGSSIMSRLVGP 223 (331)
Q Consensus 145 ~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~-pe~~~Gl~p~~g~~~~L~r~vG~ 223 (331)
.........+..++..+.++||||||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|++|++++|+|++|.
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~vG~ 175 (263)
T 2j5g_A 97 REWDKTYWEGKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGL 175 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHHcCH
Confidence 000001112456788899999999999999999 5999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHH
Q 020093 224 KKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIF 303 (331)
Q Consensus 224 ~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~ 303 (331)
++|++|+++|+.++|+||+++||||+|||++++.+++.+++++|+..||.+++.+|++++...+.. ++ ..
T Consensus 176 ~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~-----l~-----~~ 245 (263)
T 2j5g_A 176 YRGRYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIARTLAKQPTLNLRYTRVALTQRLKRL-----VN-----EG 245 (263)
T ss_dssp HHHHHHHHTTCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH-----HH-----HH
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcc-----HH-----HH
Confidence 999999999999999999999999999999999999999999999999999999999998754311 11 11
Q ss_pred hCChhHHHHHHHHhcCCC
Q 020093 304 YGTEEGSEGKTAFVERRR 321 (331)
Q Consensus 304 ~~s~d~~egi~aflekr~ 321 (331)
+..+...|||+||++||.
T Consensus 246 l~~e~~~eg~~af~~~~~ 263 (263)
T 2j5g_A 246 IGYGLALEGITATDLRNT 263 (263)
T ss_dssp HHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHhhHHHHHhccC
Confidence 122567799999999983
|
| >3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-52 Score=389.22 Aligned_cols=250 Identities=32% Similarity=0.446 Sum_probs=204.6
Q ss_pred CCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc-
Q 020093 66 TEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA- 144 (331)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~- 144 (331)
..|+.|++++ +++|++||||||+++|+||.+|+.+|.++|++++.|+++|+|||+|.| ++||+|+|++++......
T Consensus 17 ~~~~~v~~~~--~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G-~~F~aG~Dl~~~~~~~~~~ 93 (279)
T 3t3w_A 17 RTEMYIDYDV--SDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANG-KHFSAGHDLRGGGPVPDKL 93 (279)
T ss_dssp --CCSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECS-SCSBCCBCCC--------C
T ss_pred ccCCeEEEEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCC-CceeeccChHhhhhccccc
Confidence 3467899999 999999999999999999999999999999999999999999999999 699999999987542211
Q ss_pred chh-hhh--hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhh
Q 020093 145 DYE-NFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV 221 (331)
Q Consensus 145 ~~~-~~~--~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v 221 (331)
... ... ...+..++.+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|+. ++++..+ ++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~-~~~~~~~-~~~v 171 (279)
T 3t3w_A 94 TLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDIG-GVEYHGH-TWEL 171 (279)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTCS-SCSSCCH-HHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCCC-CchHHHH-Hhhc
Confidence 111 110 1123467788999999999999999999999999999999999999999999999984 4444433 9999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHH
Q 020093 222 GPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATL 301 (331)
Q Consensus 222 G~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~ 301 (331)
|..+|++|+++|+.++|+||+++||||+|||++++.+++.++|++|+..||.+++.+|++++...+.. .. .....
T Consensus 172 G~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~-~~----~~~~~ 246 (279)
T 3t3w_A 172 GPRKAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIAKMPPFALRQAKRAVNQTLDVQ-GF----YAAIQ 246 (279)
T ss_dssp CHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT-TH----HHHHH
T ss_pred CHHHHHHHHHcCCccCHHHHHHCCCCcEeeChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcc-cH----HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999765311 01 11222
Q ss_pred HHhCChhHHHHHHHHhcCCCCCCCC
Q 020093 302 IFYGTEEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 302 ~~~~s~d~~egi~aflekr~p~f~~ 326 (331)
..+.+.+..|+. +|.+.+.|.|.+
T Consensus 247 ~~~~~~~~~~~~-~~~~~~~~~~~~ 270 (279)
T 3t3w_A 247 SVFDIHQTGHGN-AMSVSGWPVLVD 270 (279)
T ss_dssp HHHHHHHHHHHH-HHHHTSSCC---
T ss_pred HHhhHHHHHHHH-HHHhcCCccccC
Confidence 334456677776 889999998876
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-53 Score=410.99 Aligned_cols=249 Identities=24% Similarity=0.308 Sum_probs=205.6
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeC--------CCCceeccccccch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK--------GTEAFCSGGDQALR 138 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~--------g~~~FcaG~Dl~~~ 138 (331)
+++.|.+++ +++|++||||||+++|+||.+|+.+|.++|+.++.|++||+|||||. |+++||+|+||+++
T Consensus 165 ~~~~v~~e~--~~gVa~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~ 242 (440)
T 2np9_A 165 EMEAVHLER--RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYL 242 (440)
T ss_dssp ECSSEEEEE--ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHH
T ss_pred CCceEEEEE--ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhh
Confidence 346799999 89999999999999999999999999999999999999999999995 54699999999987
Q ss_pred hcCCCcchhh-h-hh-hhHHHHHHHH------------HcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCC
Q 020093 139 TRDGYADYEN-F-GR-LNVLDLQVQI------------RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGP 203 (331)
Q Consensus 139 ~~~~~~~~~~-~-~~-~~~~~l~~~l------------~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~ 203 (331)
.......... . .. ..+..++..+ ..+||||||+|||+|+|||++|+++||||||+++++|++||+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev 322 (440)
T 2np9_A 243 SQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAA 322 (440)
T ss_dssp HTTCCCTTTTHHHHHHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCT
T ss_pred hccCcchhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchh
Confidence 5421111110 0 00 1123344433 479999999999999999999999999999999999999999
Q ss_pred CccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 020093 204 KVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALN 283 (331)
Q Consensus 204 ~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~ 283 (331)
++|++|++| +++|+|++|..+|++|++||+.|+|+||+++||||+|||++++++++.+++++|+ +.+++.+|++++
T Consensus 323 ~lGl~P~~g-~~~L~rlvG~~~A~ellLtG~~i~A~EA~~~GLV~~Vvp~~eL~~~a~~~A~~la---~~Av~~~K~~l~ 398 (440)
T 2np9_A 323 KEGIIPGAA-NLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLD---GDAVLANRRMLN 398 (440)
T ss_dssp TTCCCCTTH-HHHHHHHHHHHHHHHHHHHCCCEETTSGGGGGTCSEEECHHHHHHHHHHHHHTTC---SHHHHHHHHHHH
T ss_pred ccCcCcchH-HHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecChHHHHHHHHHHHHHhC---HHHHHHHHHHHH
Confidence 999999886 6899999999999999999999999999999999999999999999999998875 478999999998
Q ss_pred ccccCchh---HHHHHHHHHHHHhCChhHHHHHHHHhcCCC
Q 020093 284 AVDDGHAG---LQTLGGDATLIFYGTEEGSEGKTAFVERRR 321 (331)
Q Consensus 284 ~~~~~~~~---~~~~~~~~~~~~~~s~d~~egi~aflekr~ 321 (331)
...+.... ....+...+..++.++|++||+++|+|||+
T Consensus 399 ~~~~~~~~~~~~l~~e~~~~~~~~~s~D~~Egv~AFleKR~ 439 (440)
T 2np9_A 399 LADESPDGFRAYMAEFALMQALRLYGHDVIDKVGRFGGRPP 439 (440)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCC----
T ss_pred hhhcchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCCC
Confidence 76543221 122333455667889999999999999986
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-52 Score=387.91 Aligned_cols=248 Identities=18% Similarity=0.166 Sum_probs=208.1
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCC----CCCCCHHHHHHHHHHHHhccc-----CCCeeEEEEEeCCCCceeccccccch
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDR----RNAFRPHTVKELIRAFNDARD-----DSSVGVIILTGKGTEAFCSGGDQALR 138 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~----~Nal~~~~~~eL~~al~~~~~-----d~~v~~vVl~g~g~~~FcaG~Dl~~~ 138 (331)
|+++.+....+++|++||||||+| +|+||.+|+.+|.++|+.++. |++||+|||+|.| ++||+|+||+++
T Consensus 29 y~~i~v~~~~~~~V~~itLnrp~k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G-~~FcaG~Dl~~~ 107 (305)
T 3m6n_A 29 GSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDS-DVFNLGGDLALF 107 (305)
T ss_dssp CTTEEEEEETTTTEEEEEECTTC-----CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESS-SSSBCCBCHHHH
T ss_pred CceEEEEEEEECCEEEEEECCccccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCC-CCeecCcCHHHH
Confidence 455544332289999999999998 569999999999999999987 5899999999998 699999999987
Q ss_pred hcCCCc-chhhhh--hhhHHHHHHHH---HcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCch
Q 020093 139 TRDGYA-DYENFG--RLNVLDLQVQI---RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGY 212 (331)
Q Consensus 139 ~~~~~~-~~~~~~--~~~~~~l~~~l---~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g 212 (331)
...... ...... ...+...+..+ ..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g 187 (305)
T 3m6n_A 108 CQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMG 187 (305)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSS
T ss_pred HhccccccHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCcc
Confidence 532100 011110 11122333333 468999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chh
Q 020093 213 GSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAG 291 (331)
Q Consensus 213 ~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~ 291 (331)
++++|+|++|..+|++|++||+.|+|+||+++||||+|||++++.+++.++|++|+. +|.+++.+|++++...+. ...
T Consensus 188 ~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~-~p~a~~~~K~~l~~~~~~~l~~ 266 (305)
T 3m6n_A 188 AYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESKR-TPHAWAAMQQVREMTTAVPLEE 266 (305)
T ss_dssp HHHHHTTTSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHHHHHHHhcHHHHHHHHHcCCCCCHHHHHHCCCCCEecChhHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhhcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999986 899999999999987653 345
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHh
Q 020093 292 LQTLGGDATLIFYGTEEGSEGKTAFV 317 (331)
Q Consensus 292 ~~~~~~~~~~~~~~s~d~~egi~afl 317 (331)
..+.|...+..++.++|....+.+++
T Consensus 267 ~l~~e~~~~~~~~~s~d~~~~~m~~l 292 (305)
T 3m6n_A 267 MMRITEIWVDTAMQLGEKSLRTMDRL 292 (305)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 55677788888999999877766665
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-52 Score=379.13 Aligned_cols=239 Identities=20% Similarity=0.235 Sum_probs=204.6
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
|+.|.+++ +++|++||||||+++|+||.+|+.+|.++|++++.|+++|+|||||.| ++||+|+|++++.... ....
T Consensus 15 ~~~i~~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aG~Dl~~~~~~~-~~~~ 90 (257)
T 1szo_A 15 YENIRLER--DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTG-PSFCNEIDFTSFNLGT-PHDW 90 (257)
T ss_dssp CTTEEEEE--ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCEECGGGSCCSS-HHHH
T ss_pred CceEEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCC-CccccCcCchhhhcCC-HHHH
Confidence 45699999 899999999999999999999999999999999999999999999999 6999999999875211 1000
Q ss_pred hhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeec-CCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 148 NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQ-TGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 148 ~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~-pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
.......++++..|.++||||||+|||+|+ ||++|+++||+||++++++|++ ||+++|++|++|++++|++++|..+|
T Consensus 91 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A 169 (257)
T 1szo_A 91 DEIIFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRG 169 (257)
T ss_dssp HHHHHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHH
Confidence 001112456778899999999999999999 5999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHhCC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGT 306 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~s 306 (331)
++++++|+.++|+||+++||||+|+|++++.+++.++|++|+..||.+++.+|++++...... ++.. +..
T Consensus 170 ~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~-----l~~~-----l~~ 239 (257)
T 1szo_A 170 RYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLARRYARKVLTRQLRRV-----MEAD-----LSL 239 (257)
T ss_dssp HHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHSHHHHHH-----HHHH-----HHH
T ss_pred HHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhcc-----HHHH-----HHH
Confidence 999999999999999999999999999999999999999999999999999999998754311 1100 011
Q ss_pred hhHHHHHHHHhcCCC
Q 020093 307 EEGSEGKTAFVERRR 321 (331)
Q Consensus 307 ~d~~egi~aflekr~ 321 (331)
+...||+.+|-.|-+
T Consensus 240 ~~~~eg~~a~~~~~~ 254 (257)
T 1szo_A 240 GLAHEALAAIDLGME 254 (257)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHhhhhhhhcccc
Confidence 334588999987654
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-52 Score=376.35 Aligned_cols=212 Identities=19% Similarity=0.206 Sum_probs=191.9
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
+.|.+++ +++|++||||||+ +|+||.+|+.+|.++++++++| ++|+|||||.| ++||+|+|++++...... ...
T Consensus 5 ~~v~~~~--~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~g-~~F~aG~Dl~~~~~~~~~-~~~ 78 (233)
T 3r6h_A 5 GPVTYTH--DDAIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRD-NVGALVIAGNH-RVFSGGFDLKVLTSGEAK-PAI 78 (233)
T ss_dssp CCEEEEE--ETTEEEEEECCSS-SCCCSHHHHHHHHHHHHHHHHH-TCSEEEEECCS-SEEECCSCHHHHC---CH-HHH
T ss_pred CceEEEE--ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEECCC-CCccCCcChHHHhccChH-HHH
Confidence 4689999 8999999999995 6999999999999999999987 69999999999 699999999988643211 111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE 228 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~ 228 (331)
......++++.+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|..+|++
T Consensus 79 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a~~ 158 (233)
T 3r6h_A 79 DMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQ 158 (233)
T ss_dssp HHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHHHHHH
Confidence 11223457888999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred HHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccc
Q 020093 229 MWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVD 286 (331)
Q Consensus 229 l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~ 286 (331)
++++|++++|+||+++||||+|+|++++.+++.++|++|++.||.+++.+|++++...
T Consensus 159 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~ 216 (233)
T 3r6h_A 159 AAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREFAGLNQQAHNATKLRARAEA 216 (233)
T ss_dssp HHHSCCEECHHHHHHHTSCSEECCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHTTHHH
T ss_pred HHHcCCcCCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998754
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-51 Score=372.49 Aligned_cols=211 Identities=19% Similarity=0.241 Sum_probs=190.9
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
+.|.+++ +++|++||||||+ +|+||.+|+.+|.+++++++.| +++|||||.| ++||+|+|++++.... ....
T Consensus 6 ~~v~~~~--~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d--~~~vvltg~g-~~F~aG~Dl~~~~~~~--~~~~ 77 (232)
T 3ot6_A 6 DLVSYHL--DDGVATLTLNNGK-VNAISPDVIIAFNAALDQAEKD--RAIVIVTGQP-GILSGGYDLKVMTSSA--EAAI 77 (232)
T ss_dssp HHEEEEE--ETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHHT--TCEEEEECBT-EEEECCBCHHHHHHCH--HHHH
T ss_pred cceEEEE--ECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcC--CCEEEEECCC-CCccCCcCHHHHhhCh--HHHH
Confidence 5689999 9999999999995 6999999999999999999977 4899999999 6999999999876421 1111
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCC-ceeecCCCCccCCCCchHHHHHHHhhCHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAR 227 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~ 227 (331)
......+.++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|+++++++|++++|..+|+
T Consensus 78 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~a~ 157 (232)
T 3ot6_A 78 NLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFN 157 (232)
T ss_dssp HHHHHHHHHHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHHHHH
Confidence 11123457888999999999999999999999999999999999998 89999999999998888899999999999999
Q ss_pred HHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc
Q 020093 228 EMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD 287 (331)
Q Consensus 228 ~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~ 287 (331)
+|+++|+.++|+||+++||||+|||++++.+++.++|++|++.||.+++.+|++++...+
T Consensus 158 ~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~ 217 (232)
T 3ot6_A 158 RSVINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQLKKINMNAHKKTKLKVRKGLL 217 (232)
T ss_dssp HHHTSCCEECHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCccCHHHHHHCCCCCEecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999999999999999999999999999997653
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-49 Score=407.70 Aligned_cols=238 Identities=23% Similarity=0.356 Sum_probs=210.4
Q ss_pred EEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhh
Q 020093 73 YEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRL 152 (331)
Q Consensus 73 ~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 152 (331)
++. +++|++||||||+ .|+||.+|+.+|.++|++++.|++||+|||||+| ++||+|+||+++...... .
T Consensus 25 ~~~--~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g-~~F~aGaDl~~~~~~~~~-------~ 93 (742)
T 3zwc_A 25 LRL--PHSLAMIRLCNPP-VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGAN-GNFCAGADIHGFSAFTPG-------L 93 (742)
T ss_dssp EEC--STTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCCBCSSSCCSSCSC-------S
T ss_pred EEe--eCCEEEEEeCCCc-ccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCC-CccccCcChHhhhccChh-------H
Confidence 445 8999999999997 5999999999999999999999999999999999 699999999987543221 1
Q ss_pred hHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHc
Q 020093 153 NVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFL 232 (331)
Q Consensus 153 ~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~lt 232 (331)
.+..++.+|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|..+|++|++|
T Consensus 94 ~~~~~~~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~lt 173 (742)
T 3zwc_A 94 ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITS 173 (742)
T ss_dssp HHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHHHHHHc
Confidence 24578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCH----------------------------------HHHHHH
Q 020093 233 ARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSP----------------------------------TAIRVL 278 (331)
Q Consensus 233 G~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~----------------------------------~a~~~~ 278 (331)
|+.++|+||+++||||+|++.+. .+++.++|++|+.+++ .+....
T Consensus 174 G~~i~a~eA~~~GLv~~vv~~d~-~~~A~~~A~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~A~~~~ 252 (742)
T 3zwc_A 174 GKYLSADEALRLGILDAVVKSDP-VEEAIKFAQKIIDKPIEPRRIFNKPVPSLPNMDSVFAEAIAKVRKQYPGVLAPETC 252 (742)
T ss_dssp CCCEEHHHHHHHTSCSEEESSCH-HHHHHHHHHHHTTSCSGGGCGGGSCCCCCTTHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred CCchhHHHHHHcCCccEecCchh-hHHHHHHHHHHhcCCchhhhhhcccccccchhhhhHHHHHHHHhhhccchhHHHHH
Confidence 99999999999999999998765 5788999999998765 255556
Q ss_pred HHHHHcccc-CchhHHHHHHHHHHHHhCChhHHHHHHHHhcCCCC
Q 020093 279 KSALNAVDD-GHAGLQTLGGDATLIFYGTEEGSEGKTAFVERRRP 322 (331)
Q Consensus 279 K~~l~~~~~-~~~~~~~~~~~~~~~~~~s~d~~egi~aflekr~p 322 (331)
+++++...+ ........|.+.+..++.|++.++++.+|+++|++
T Consensus 253 ~~~v~~~~~~~~~~gl~~E~~~F~~l~~s~~~k~~~~aFf~~r~~ 297 (742)
T 3zwc_A 253 VRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSA 297 (742)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Confidence 666665543 33445677888999999999999999999987654
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-49 Score=406.89 Aligned_cols=252 Identities=21% Similarity=0.271 Sum_probs=215.8
Q ss_pred ccEEEE-EeeCCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 69 TDIIYE-KAVGEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 69 ~~v~~~-~~~~~~v~~ItLnrp~-~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
+.+.++ . +++|++||||||+ ++|+||.+|+.+|.++|++++.|+++|+||||| |+++||+|+||+++........
T Consensus 6 ~~i~~~~~--~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~ 82 (715)
T 1wdk_A 6 KAITVTAL--ESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFKLPD 82 (715)
T ss_dssp SSEEEEEC--GGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTTSCH
T ss_pred CeEEEEEe--eCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhcccCCH
Confidence 458888 6 7899999999999 999999999999999999999999999999999 7459999999998753111111
Q ss_pred hhh--hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 147 ENF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 147 ~~~--~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
... ....++.++.+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~ 162 (715)
T 1wdk_A 83 AELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVD 162 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHH
Confidence 011 112356788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhcc--C----------HH---------HHH-------
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRN--S----------PT---------AIR------- 276 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~----------~~---------a~~------- 276 (331)
+|++|+++|+.++|+||+++||||+|||++++.+++.+++++++.. + |. ++.
T Consensus 163 ~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~ 242 (715)
T 1wdk_A 163 NAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVA 242 (715)
T ss_dssp HHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHhhccCCcchhcccccCccccCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876 4 32 243
Q ss_pred -----------HHHHHHHccccC-chhHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCC
Q 020093 277 -----------VLKSALNAVDDG-HAGLQTLGGDATLIFYGTEEGSEGKTAFVERRRPD 323 (331)
Q Consensus 277 -----------~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~aflekr~p~ 323 (331)
.+|++++...+. .....+.|.+.+..++.++|.+|++.+|++||+|+
T Consensus 243 ~~~~g~~~A~~~~k~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~ 301 (715)
T 1wdk_A 243 GQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELK 301 (715)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HhcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhh
Confidence 445566654432 33445667778888999999999999999998765
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-49 Score=409.98 Aligned_cols=255 Identities=23% Similarity=0.307 Sum_probs=213.1
Q ss_pred cccEEEE-EeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 68 FTDIIYE-KAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 68 ~~~v~~~-~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
++.+.++ . +++|++|||||| ++|+||.+|+.+|.++|++++.|++||+||||| |+++||+|+||+++........
T Consensus 6 ~~~i~~~~~--~~~va~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~ 81 (725)
T 2wtb_A 6 KGKTVMEVG--GDGVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKGNV 81 (725)
T ss_dssp -CEEEEEEC--TTSEEEEEEECT-TTTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC-----------
T ss_pred CCeEEEEEe--eCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccchhh
Confidence 4568888 6 899999999999 899999999999999999999999999999999 7459999999998753211000
Q ss_pred --hhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 147 --ENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 147 --~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
.......++.++.+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~~ 161 (725)
T 2wtb_A 82 KEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLT 161 (725)
T ss_dssp -CCSSSHHHHHCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred hhHHHHHHHHHHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCHH
Confidence 000011233455678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhcc--CHH-HH--------------------------
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRN--SPT-AI-------------------------- 275 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~--~~~-a~-------------------------- 275 (331)
+|++|+++|+.++|+||+++||||+|||++++.+++.+++++++.. |+. ++
T Consensus 162 ~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 241 (725)
T 2wtb_A 162 KALEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKR 241 (725)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTSCSEECCTTTHHHHHHHHHHHHHTTSSCCCCGGGCCTTSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHCCccceEcChhHHHHHHHHHHHHHHhcCCChhhhhhhccccCccchHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999876 332 22
Q ss_pred -------HHHHHHHHcccc-CchhHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCCCC
Q 020093 276 -------RVLKSALNAVDD-GHAGLQTLGGDATLIFYGTEEGSEGKTAFVERRRPDFLK 326 (331)
Q Consensus 276 -------~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~s~d~~egi~aflekr~p~f~~ 326 (331)
+.+|++++.... ........|.+.+..++.++|.+|++.+|++||+|+...
T Consensus 242 ~~g~pA~~~~k~~~~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~ 300 (725)
T 2wtb_A 242 APNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVP 300 (725)
T ss_dssp CTTCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCT
T ss_pred ccCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhcccC
Confidence 478888877554 234445677778888999999999999999999887654
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-46 Score=364.71 Aligned_cols=212 Identities=20% Similarity=0.238 Sum_probs=189.6
Q ss_pred CCcccEEEEEeeCCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHhcccC-CCeeEEEEEe-CCCCceeccc
Q 020093 66 TEFTDIIYEKAVGEGIAKITINRPD----------RRNAFRPHTVKELIRAFNDARDD-SSVGVIILTG-KGTEAFCSGG 133 (331)
Q Consensus 66 ~~~~~v~~~~~~~~~v~~ItLnrp~----------~~Nal~~~~~~eL~~al~~~~~d-~~v~~vVl~g-~g~~~FcaG~ 133 (331)
..|++|.+++ +++|++||||||+ ++|+||.+|+.+|.++|++++.| ++||+|||+| .| ++||+|+
T Consensus 18 ~~~~~v~ve~--~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G-~~FcAGa 94 (556)
T 2w3p_A 18 SQYKHWKLSF--NGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKD-RVFCSGA 94 (556)
T ss_dssp GGCSSEEEEE--ETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSS-SEEECEE
T ss_pred CcCceEEEEe--eCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCC-CcccCCc
Confidence 3457799999 8999999999998 89999999999999999999999 9999999999 77 7999999
Q ss_pred cccchhcCCCcchhhhhhhhHHHHHHHH----HcCCCcEEEEEcCccccchhhhhhcccEEEEeCC--ceeecCCCC-cc
Q 020093 134 DQALRTRDGYADYENFGRLNVLDLQVQI----RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN--AIFGQTGPK-VG 206 (331)
Q Consensus 134 Dl~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~--a~f~~pe~~-~G 206 (331)
|++++..........+ ...++.++..| .++||||||+|||+|+|||++|+++||+|||+++ ++|++||++ +|
T Consensus 95 DL~el~~~~~~~~~~~-~~~~~~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LG 173 (556)
T 2w3p_A 95 NIFMLGLSTHAWKVNF-CKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLG 173 (556)
T ss_dssp CHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHS
T ss_pred CHHHHhhcccHHHHHH-HHHHHHHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccC
Confidence 9998754321101111 11245677788 9999999999999999999999999999999999 999999999 99
Q ss_pred CCCCchHHHHHH--HhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 020093 207 SFDAGYGSSIMS--RLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSAL 282 (331)
Q Consensus 207 l~p~~g~~~~L~--r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 282 (331)
++|++|++++|+ |++|..+|++|+++|+.++|+||+++||||+|||++++.+.+.++|++|+..+|.+++. |+.+
T Consensus 174 L~Pg~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~~eL~~~A~~lA~~LA~~~p~Av~~-K~l~ 250 (556)
T 2w3p_A 174 VLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAHA-QGVP 250 (556)
T ss_dssp SCCTTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHHTTCCCCTTC-CCCC
T ss_pred CCCCccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChhHHHHHHHHHHHHHHcCChHHHhh-hhhh
Confidence 999999999999 99999999999999999999999999999999999999999999999999999999874 6553
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.1e-25 Score=222.15 Aligned_cols=170 Identities=19% Similarity=0.248 Sum_probs=145.5
Q ss_pred CCCEEEEEEcCCCCCCC--CCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHH
Q 020093 78 GEGIAKITINRPDRRNA--FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVL 155 (331)
Q Consensus 78 ~~~v~~ItLnrp~~~Na--l~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 155 (331)
+++|++|+||+|.+.|+ ++..+.++|.++|++++.|+++++|||++++ .|+|+... ..++
T Consensus 300 ~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s-----pGG~~~~~-------------~~i~ 361 (593)
T 3bf0_A 300 GDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS-----PGGSVTAS-------------EVIR 361 (593)
T ss_dssp SCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE-----EEECHHHH-------------HHHH
T ss_pred CCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC-----CCCCHHHH-------------HHHH
Confidence 67899999999998898 6889999999999999999999999999976 37777532 1234
Q ss_pred HHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCC------------CccCCCCc------------
Q 020093 156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGP------------KVGSFDAG------------ 211 (331)
Q Consensus 156 ~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~------------~~Gl~p~~------------ 211 (331)
+.+.++..++|||||+|+|.|.|||+.|+++||++||++++.|+.+++ ++|+.|+.
T Consensus 362 ~~i~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~~~~ 441 (593)
T 3bf0_A 362 AELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSIT 441 (593)
T ss_dssp HHHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCCCTT
T ss_pred HHHHHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeecccccccCcC
Confidence 566788889999999999999999999999999999999999999985 57876432
Q ss_pred -hHH---------------HHHHHhhCHHH-----HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHH
Q 020093 212 -YGS---------------SIMSRLVGPKK-----AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSR 265 (331)
Q Consensus 212 -g~~---------------~~L~r~vG~~~-----a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~ 265 (331)
+.+ ..+.+.|+..+ +.+++++|+.++|+||+++||||++++.+++.+.+.+++.
T Consensus 442 ~~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~~~~~~~a~~~a~ 516 (593)
T 3bf0_A 442 RALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAK 516 (593)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCHHHHHHHHHHHcC
Confidence 222 56788889888 8999999999999999999999999988887777666544
|
| >3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.1e-22 Score=178.44 Aligned_cols=168 Identities=18% Similarity=0.229 Sum_probs=126.7
Q ss_pred CCCEEEEEEcCCCCCCCCCHH-------HHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhh
Q 020093 78 GEGIAKITINRPDRRNAFRPH-------TVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFG 150 (331)
Q Consensus 78 ~~~v~~ItLnrp~~~Nal~~~-------~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~ 150 (331)
+++|++|+++.+=..+.-... .+++|.++|++++.|++||+|||++. |.|+|+....
T Consensus 2 ~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~-----s~Gg~~~~~~----------- 65 (240)
T 3rst_A 2 SSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN-----SPGGGVYESA----------- 65 (240)
T ss_dssp CCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEE-----ECCBCHHHHH-----------
T ss_pred CCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEec-----CCCCCHHHHH-----------
Confidence 467999999976433211111 35899999999999999999999986 4688876421
Q ss_pred hhhHHHHHHHHHc-CCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecC---------------------CCCccCC
Q 020093 151 RLNVLDLQVQIRR-LPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQT---------------------GPKVGSF 208 (331)
Q Consensus 151 ~~~~~~l~~~l~~-~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~p---------------------e~~~Gl~ 208 (331)
.+.+.+..+.. ++|||||+|+|.|.|||+.|+++||++|+++++.|+++ +.+.|.+
T Consensus 66 --~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~ 143 (240)
T 3rst_A 66 --EIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAH 143 (240)
T ss_dssp --HHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTT
T ss_pred --HHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEecccc
Confidence 23455667777 89999999999999999999999999999999999999 4456655
Q ss_pred CCchH--------------------------HHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHH
Q 020093 209 DAGYG--------------------------SSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIK 262 (331)
Q Consensus 209 p~~g~--------------------------~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~ 262 (331)
++.+. .....|.+......+ +++|+.+++++|+++||||++.+.+++.+.+.+
T Consensus 144 k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~-~~~g~~~~a~~A~~~GLVD~i~~~~~~~~~~~~ 222 (240)
T 3rst_A 144 ADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKK-IADGRVYDGRQAKKLNLVDELGFYDDTITAMKK 222 (240)
T ss_dssp TTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHH-HCSSCEEEHHHHHHTTSSSEECCHHHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence 55431 112334455554444 789999999999999999999987776666655
Q ss_pred HH
Q 020093 263 WS 264 (331)
Q Consensus 263 ~a 264 (331)
++
T Consensus 223 ~~ 224 (240)
T 3rst_A 223 DH 224 (240)
T ss_dssp HC
T ss_pred Hh
Confidence 54
|
| >3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6.8e-21 Score=170.65 Aligned_cols=148 Identities=21% Similarity=0.234 Sum_probs=125.8
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHH
Q 020093 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (331)
Q Consensus 78 ~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (331)
.+.|++|+|+ |+|+..+.+.|.++|+.++++ ++++|||+.+ |.|+|+.. ...+
T Consensus 7 ~~~V~vI~i~-----g~I~~~~~~~l~~~l~~a~~~-~~~~Ivl~in-----spGG~v~~----------------~~~i 59 (230)
T 3viv_A 7 KNIVYVAQIK-----GQITSYTYDQFDRYITIAEQD-NAEAIIIELD-----TPGGRADA----------------MMNI 59 (230)
T ss_dssp CCEEEEEEEE-----SCBCHHHHHHHHHHHHHHHHT-TCSEEEEEEE-----BSCEEHHH----------------HHHH
T ss_pred CCeEEEEEEe-----CEECHHHHHHHHHHHHHHhcC-CCCEEEEEEe-----CCCcCHHH----------------HHHH
Confidence 5679999998 579999999999999999864 6999999875 56777642 2356
Q ss_pred HHHHHcCCCcEEEEE---cCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHH---------------HHHHH
Q 020093 158 QVQIRRLPKPVIAMV---AGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGS---------------SIMSR 219 (331)
Q Consensus 158 ~~~l~~~~kPvIAav---~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~---------------~~L~r 219 (331)
+..|..++||||++| +|.|.|+|+.|+++||+++++++++|+.+++..+. |..|.+ ..+++
T Consensus 60 ~~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~~la~ 138 (230)
T 3viv_A 60 VQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIKSLAQ 138 (230)
T ss_dssp HHHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999 99999999999999999999999999999987532 333331 24778
Q ss_pred hhCH--HHHHHHHHcCCCCCHHHHHhcCcccEecCC
Q 020093 220 LVGP--KKAREMWFLARFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 220 ~vG~--~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~ 253 (331)
..|. ..+.+++..++.++|+||+++||||+|+++
T Consensus 139 ~~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~ 174 (230)
T 3viv_A 139 ESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARD 174 (230)
T ss_dssp HTTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSS
T ss_pred HhCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCC
Confidence 8885 789999999999999999999999999975
|
| >2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.69 E-value=8.2e-17 Score=149.93 Aligned_cols=157 Identities=16% Similarity=0.243 Sum_probs=128.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHH
Q 020093 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ 160 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (331)
|+++..+.--..|+|+..+.+.+.++++.+.++ .+.+|+|++.| |+|+.+... . ......+...
T Consensus 120 V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~sG------Garlqeg~~-------~--l~~~~~i~~a 183 (304)
T 2f9y_B 120 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSASG------GARMQEALM-------S--LMQMAKTSAA 183 (304)
T ss_dssp CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES------SBCGGGTHH-------H--HHHHHHHHHH
T ss_pred EEEEEEcCccccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECCC------CcCHHHHHH-------H--HHHHHHHHHH
Confidence 555566655578999999999999999999988 89999999977 778855321 1 1122344555
Q ss_pred HH---cCCCcEEEEEcCccccch-hhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCC
Q 020093 161 IR---RLPKPVIAMVAGYAVGGG-HVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFY 236 (331)
Q Consensus 161 l~---~~~kPvIAav~G~a~GgG-~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~ 236 (331)
+. ..++|+|++|+|.|.||| +.++++||++|+.++|+|++. +...+.+++|.. ++++..
T Consensus 184 l~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~-----------Gp~~i~~~ig~~------l~~~~~ 246 (304)
T 2f9y_B 184 LAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA-----------GPRVIEQTVREK------LPPGFQ 246 (304)
T ss_dssp HHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS-----------CHHHHHHHHTSC------CCTTTT
T ss_pred HHHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee-----------cHHHHHHHhCcc------CCcccC
Confidence 54 459999999999999999 788999999999999999985 356677888864 578999
Q ss_pred CHHHHHhcCcccEecCCCcHHHHHHHHHHHHhcc
Q 020093 237 TAEEAEKMGLVNTVVPLEKLEQETIKWSREILRN 270 (331)
Q Consensus 237 ~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~ 270 (331)
+++++.++|+||.|++++++.+.+.+++..+...
T Consensus 247 ~Ae~~~~~Glvd~Vv~~~el~~~l~~ll~~l~~~ 280 (304)
T 2f9y_B 247 RSEFLIEKGAIDMIVRRPEMRLKLASILAKLMNL 280 (304)
T ss_dssp BHHHHGGGTCCSEECCHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHhcCCccEEeCcHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999998764
|
| >1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=141.94 Aligned_cols=139 Identities=17% Similarity=0.171 Sum_probs=110.4
Q ss_pred CCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcC
Q 020093 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (331)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G 174 (331)
++.++.++|.+.|..++.|++++.|+|.- .|.|+++.. ...++..|..+++||++.|+|
T Consensus 54 I~~~~a~~i~~~L~~l~~~~~~k~I~l~I-----nSPGG~v~a----------------g~~I~~~i~~~~~pV~t~v~G 112 (218)
T 1y7o_A 54 VEDNMANSVIAQLLFLDAQDSTKDIYLYV-----NTPGGSVSA----------------GLAIVDTMNFIKADVQTIVMG 112 (218)
T ss_dssp BCHHHHHHHHHHHHHHHHHCTTSCEEEEE-----EECCBCHHH----------------HHHHHHHHHHSSSCEEEEEEE
T ss_pred ECHHHHHHHHHHHHHHHhcCCCCCEEEEE-----ECcCCCHHH----------------HHHHHHHHHhcCCCEEEEEcc
Confidence 88999999999999999887788877753 444555431 124556788899999999999
Q ss_pred ccccchhhhhhcccE--EEEeCCceeecCCCCccCCCCchH------------------HHHHHHhhCH--HHHHHHHHc
Q 020093 175 YAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYG------------------SSIMSRLVGP--KKAREMWFL 232 (331)
Q Consensus 175 ~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~------------------~~~L~r~vG~--~~a~~l~lt 232 (331)
.|.++|+.|+++||. |++.++++|++.++.-| ++..|. ...+++..|. ..+.+++..
T Consensus 113 ~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~~g-~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~~~~ 191 (218)
T 1y7o_A 113 MAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGG-TGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAER 191 (218)
T ss_dssp EEETHHHHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHS
T ss_pred EeHHHHHHHHHcCCcCcEEEcCCcEEEEeccccc-ccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhC
Confidence 999999999999999 99999999999998743 332332 2457777776 578899999
Q ss_pred CCCCCHHHHHhcCcccEecCCCc
Q 020093 233 ARFYTAEEAEKMGLVNTVVPLEK 255 (331)
Q Consensus 233 G~~~~a~eA~~~GLv~~vv~~~~ 255 (331)
|+.++|+||+++||||+|++.++
T Consensus 192 ~~~~ta~EA~e~GLVD~v~~~~~ 214 (218)
T 1y7o_A 192 DNWMSAQETLEYGFIDEIMANNS 214 (218)
T ss_dssp CCCBCHHHHHHHTSCSEECCCC-
T ss_pred CCEEcHHHHHHCCCCcEEcCcCC
Confidence 99999999999999999998775
|
| >2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.5e-15 Score=137.56 Aligned_cols=152 Identities=16% Similarity=0.204 Sum_probs=109.6
Q ss_pred CCCEEEEEEcCCC---------CCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 78 GEGIAKITINRPD---------RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 78 ~~~v~~ItLnrp~---------~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
+|.-..|.-|+|. ..++++++..+.+.++++.+++.. +=+|.|.-.++ ++. |.+....
T Consensus 115 ~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~-~PlI~lvdt~G-a~~-g~~ae~~---------- 181 (327)
T 2f9i_A 115 NGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFN-RPIFTFIDTKG-AYP-GKAAEER---------- 181 (327)
T ss_dssp TTEEEEEEEECCCSSHHHHHHTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEESC-SCC-CHHHHHT----------
T ss_pred CCEEEEEEEEcCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCCC-CCc-chhhhhh----------
Confidence 5655566666665 347899999999999999888764 44555544332 222 3221110
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHh-hCHHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL-VGPKKAR 227 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~-vG~~~a~ 227 (331)
.....+..++..+..+++|+|++|+|.|.|||+.++++||++||.++++|++ +.|.+ ++..+.+. .+...+.
T Consensus 182 g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~via~~~A~~~v------~~peg-~a~il~~~~~~a~~A~ 254 (327)
T 2f9i_A 182 GQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSV------ISPEG-AAALLWKDSNLAKIAA 254 (327)
T ss_dssp THHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHHHTTCCCSEEEEETTCBCBS------SCHHH-HHHHHSSCGGGHHHHH
T ss_pred hhHHHHHHHHHHHHhCCCCEEEEEECCcChHHHHHHHCCCEEEEcCCceEee------cCchH-HHHHHHHHhcchHHHH
Confidence 0112345667789999999999999999999999999999999999999986 23444 44455444 4446676
Q ss_pred HHHHcCCCCCHHHHHhcCcccEecCC
Q 020093 228 EMWFLARFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 228 ~l~ltG~~~~a~eA~~~GLv~~vv~~ 253 (331)
++ +.++|++|+++||||+|++.
T Consensus 255 e~----~~itA~~a~~~GlVd~VV~e 276 (327)
T 2f9i_A 255 ET----MKITAHDIKQLGIIDDVISE 276 (327)
T ss_dssp HH----HTCBHHHHHHTTSSSEEECC
T ss_pred HH----cCCCHHHHHHcCCceEEecC
Confidence 66 78999999999999999984
|
| >2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=136.42 Aligned_cols=140 Identities=16% Similarity=0.143 Sum_probs=105.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEE
Q 020093 91 RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIA 170 (331)
Q Consensus 91 ~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIA 170 (331)
..++++++..+.+.++++.+++.. +=+|.|.-.++ ++. |...... .....+..++..+..+++|+|+
T Consensus 151 ~~G~~~~~~~~Ka~r~~~~A~~~~-lPlI~lvDt~G-a~~-g~~aE~~----------g~~~~~a~~l~al~~~~vPvIa 217 (339)
T 2f9y_A 151 NFGMPAPEGYRKALRLMQMAERFK-MPIITFIDTPG-AYP-GVGAEER----------GQSEAIARNLREMSRLGVPVVC 217 (339)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEESC-SCC-SHHHHHT----------THHHHHHHHHHHHHTCSSCEEE
T ss_pred hcCCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCCC-Ccc-chHHHHH----------HHHHHHHHHHHHHHhCCCCEEE
Confidence 347899999999999999887664 44555544442 222 3221110 0112345667789999999999
Q ss_pred EEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEe
Q 020093 171 MVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250 (331)
Q Consensus 171 av~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~v 250 (331)
+|+|.|.|||+.++++||++||.++++|++ +.|.++++.++.+..+...|.++ +.++|++|+++||||+|
T Consensus 218 vV~G~a~GGGa~~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~GlVd~V 287 (339)
T 2f9y_A 218 TVIGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSI 287 (339)
T ss_dssp EEEEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCC
T ss_pred EEeCCcCcHHHHHHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCCeeEE
Confidence 999999999999999999999999999997 34566666666666677778777 67999999999999999
Q ss_pred cCC
Q 020093 251 VPL 253 (331)
Q Consensus 251 v~~ 253 (331)
++.
T Consensus 288 V~e 290 (339)
T 2f9y_A 288 IPE 290 (339)
T ss_dssp CCC
T ss_pred ecC
Confidence 984
|
| >2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A | Back alignment and structure |
|---|
Probab=99.20 E-value=5e-11 Score=105.18 Aligned_cols=139 Identities=16% Similarity=0.112 Sum_probs=100.1
Q ss_pred CCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEc
Q 020093 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (331)
Q Consensus 94 al~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~ 173 (331)
.++..+.+.+.+.|..++.++.++.|+|.=+ |.|+++.. ...++..|..+++||++.|.
T Consensus 35 ~I~~~~a~~i~~~L~~~~~~~~~k~I~l~In-----SPGG~v~a----------------~~~I~~~i~~~~~pV~~~v~ 93 (208)
T 2cby_A 35 EVNDEIANRLCAQILLLAAEDASKDISLYIN-----SPGGSISA----------------GMAIYDTMVLAPCDIATYAM 93 (208)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE-----ECCBCHHH----------------HHHHHHHHHHCSSCEEEEEE
T ss_pred EECHHHHHHHHHHHHHHHhCCCCCCEEEEEE-----CCCCCHHH----------------HHHHHHHHHhcCCCEEEEEC
Confidence 3788999999999999987777776666432 22443321 22456678889999999999
Q ss_pred CccccchhhhhhcccE--EEEeCCceeecCCCCccCCC---CchHH------------HHHHHhhC--HHHHHHHHHcCC
Q 020093 174 GYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFD---AGYGS------------SIMSRLVG--PKKAREMWFLAR 234 (331)
Q Consensus 174 G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p---~~g~~------------~~L~r~vG--~~~a~~l~ltG~ 234 (331)
|.|.++|..|+++||. |++.+++.+++....-|... +.... ..+.+..| .....+++..|+
T Consensus 94 g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~ 173 (208)
T 2cby_A 94 GMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDR 173 (208)
T ss_dssp EEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTC
T ss_pred cEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCCc
Confidence 9999999999999998 99999999998776533210 00000 11333333 334566788999
Q ss_pred CCCHHHHHhcCcccEecCC
Q 020093 235 FYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 235 ~~~a~eA~~~GLv~~vv~~ 253 (331)
.++++||+++||||++...
T Consensus 174 ~~ta~eA~e~GLvD~i~~~ 192 (208)
T 2cby_A 174 WFTAAEALEYGFVDHIITR 192 (208)
T ss_dssp EEEHHHHHHHTSCSEECSC
T ss_pred EEcHHHHHHcCCCcEecCc
Confidence 9999999999999999965
|
| >3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-08 Score=87.91 Aligned_cols=140 Identities=21% Similarity=0.194 Sum_probs=99.0
Q ss_pred CCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEc
Q 020093 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (331)
Q Consensus 94 al~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~ 173 (331)
.++..+.+.+...|..++.++..+.|+|.=+. .|+++.. ...++..|..+++||++.+.
T Consensus 35 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InS-----PGG~v~~----------------~~~I~~~i~~~~~~V~t~~~ 93 (203)
T 3qwd_A 35 QIDDNVANSIVSQLLFLQAQDSEKDIYLYINS-----PGGSVTA----------------GFAIYDTIQHIKPDVQTICI 93 (203)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEE-----CCBCHHH----------------HHHHHHHHHHSSSCEEEEEE
T ss_pred EECHHHHHHHHHHHHHHHhcCCCCCEEEEEeC-----CCCCHHH----------------HHHHHHHHHHhcCCcEEEEe
Confidence 48899999999999999877666666654322 2444321 12455677888999999999
Q ss_pred Cccccchhhhhhccc--EEEEeCCceeecCCCCccCCCCchHHH---------------HHHHhhC--HHHHHHHHHcCC
Q 020093 174 GYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGSS---------------IMSRLVG--PKKAREMWFLAR 234 (331)
Q Consensus 174 G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~L~r~vG--~~~a~~l~ltG~ 234 (331)
|.|.++|..|+++|| .|++.+++.|.+....-|.....--.. .+.+..| .....+++-...
T Consensus 94 G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~~~~d~ 173 (203)
T 3qwd_A 94 GMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDN 173 (203)
T ss_dssp EEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHHHTSCC
T ss_pred eeehhHHHHHHHcCCcCeEEEcCCceEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhcCc
Confidence 999999999999999 699999999998665433211000000 1122222 334555665667
Q ss_pred CCCHHHHHhcCcccEecCCC
Q 020093 235 FYTAEEAEKMGLVNTVVPLE 254 (331)
Q Consensus 235 ~~~a~eA~~~GLv~~vv~~~ 254 (331)
.++|+||+++||||+|+...
T Consensus 174 ~lta~EA~e~GliD~I~~~~ 193 (203)
T 3qwd_A 174 FLTAEEAKEYGLIDEVMVPE 193 (203)
T ss_dssp CEEHHHHHHHTSCSEECCCC
T ss_pred eecHHHHHHcCCcCEecCCc
Confidence 89999999999999999764
|
| >1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A | Back alignment and structure |
|---|
Probab=98.85 E-value=6e-09 Score=90.69 Aligned_cols=136 Identities=17% Similarity=0.139 Sum_probs=97.0
Q ss_pred CCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEc
Q 020093 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (331)
Q Consensus 94 al~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~ 173 (331)
.++..+.+.+.+.|..++.++.++.|+|.=+.+ |+++.. ...++..|..+++||++.+.
T Consensus 34 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSP-----GG~v~a----------------~~~I~~~i~~~~~pV~~~v~ 92 (193)
T 1yg6_A 34 QVEDHMANLIVAQMLFLEAENPEKDIYLYINSP-----GGVITA----------------GMSIYDTMQFIKPDVSTICM 92 (193)
T ss_dssp SBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEEC-----CBCHHH----------------HHHHHHHHHHSSSCEEEEEE
T ss_pred EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECc-----CCCHHH----------------HHHHHHHHHhcCCCEEEEEe
Confidence 378899999999999988776677777643322 444321 22456678888999999999
Q ss_pred CccccchhhhhhcccE--EEEeCCceeecCCCCccCCCCchHH-H-----------------HHHHhhC--HHHHHHHHH
Q 020093 174 GYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGS-S-----------------IMSRLVG--PKKAREMWF 231 (331)
Q Consensus 174 G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~-~-----------------~L~r~vG--~~~a~~l~l 231 (331)
|.|..+|.-|+++||. |++.+++.+++.....|.. |.. - .+.+..| .....+++-
T Consensus 93 g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~~---G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~ 169 (193)
T 1yg6_A 93 GQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQ---GQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTE 169 (193)
T ss_dssp EEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEE---EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTS
T ss_pred eeHHHHHHHHHHCCCcCcEEEecCcEEEEEecccccc---CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Confidence 9999999999999999 9999999999866554321 111 0 0112222 233444443
Q ss_pred cCCCCCHHHHHhcCcccEecCC
Q 020093 232 LARFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 232 tG~~~~a~eA~~~GLv~~vv~~ 253 (331)
.+..++++||+++||||++..+
T Consensus 170 ~~~~~ta~eA~~~GliD~i~~~ 191 (193)
T 1yg6_A 170 RDRFLSAPEAVEYGLVDSILTH 191 (193)
T ss_dssp SCEEEEHHHHHHHTSSSEECCC
T ss_pred CCeEEcHHHHHHcCCCCEecCC
Confidence 4556799999999999999864
|
| >2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.9e-08 Score=88.99 Aligned_cols=139 Identities=14% Similarity=0.076 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEc
Q 020093 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (331)
Q Consensus 94 al~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~ 173 (331)
.++..+.+.+...|..++.++. +.|+|.=+.+ |+++.. ...++..|..+++||++.+.
T Consensus 47 ~I~~~~a~~i~~~L~~l~~~~~-k~I~l~INSP-----GGsv~a----------------~~~I~~~i~~~~~pV~t~v~ 104 (215)
T 2f6i_A 47 EINKKTADELISQLLYLDNINH-NDIKIYINSP-----GGSINE----------------GLAILDIFNYIKSDIQTISF 104 (215)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCC-SCEEEEEEEC-----CBCHHH----------------HHHHHHHHHHSSSCEEEEEE
T ss_pred EECHHHHHHHHHHHHHHHhCCC-CcEEEEEECC-----CCCHHH----------------HHHHHHHHHhcCCCEEEEEe
Confidence 3788899999999998876555 6666643322 443321 22456678888999999999
Q ss_pred CccccchhhhhhcccE--EEEeCCceeecCCCCccCCC---CchH----HH--------HHHHhhC--HHHHHHHHHcCC
Q 020093 174 GYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFD---AGYG----SS--------IMSRLVG--PKKAREMWFLAR 234 (331)
Q Consensus 174 G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p---~~g~----~~--------~L~r~vG--~~~a~~l~ltG~ 234 (331)
|.|..+|.-|+++||. |++.+++.+++.....|... +... .. .+.+..| .....+++-.+.
T Consensus 105 g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~~~ 184 (215)
T 2f6i_A 105 GLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDY 184 (215)
T ss_dssp EEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTC
T ss_pred eEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCCe
Confidence 9999999999999999 99999999998765433210 0000 00 0111112 334455555456
Q ss_pred CCCHHHHHhcCcccEecCCC
Q 020093 235 FYTAEEAEKMGLVNTVVPLE 254 (331)
Q Consensus 235 ~~~a~eA~~~GLv~~vv~~~ 254 (331)
.++++||+++||||+|....
T Consensus 185 ~lta~eA~e~GLiD~I~~~~ 204 (215)
T 2f6i_A 185 YMNALEAKQYGIIDEVIETK 204 (215)
T ss_dssp EECHHHHHHHTSCSEECCCS
T ss_pred ecCHHHHHHCCCCCEecCCc
Confidence 67999999999999998653
|
| >1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=5.2e-08 Score=89.00 Aligned_cols=137 Identities=15% Similarity=0.149 Sum_probs=96.6
Q ss_pred CCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcC
Q 020093 95 FRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAG 174 (331)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G 174 (331)
++.++.+.+...|..++.++..+.|+|.=+-+ |+++.. ...++..|..+++||++.+.|
T Consensus 91 I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSP-----GGsV~a----------------g~aIyd~I~~~k~pV~t~v~G 149 (277)
T 1tg6_A 91 IDDSVASLVIAQLLFLQSESNKKPIHMYINSP-----GGVVTA----------------GLAIYDTMQYILNPICTWCVG 149 (277)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEEC-----CBCHHH----------------HHHHHHHHHHSCSCEEEEEEE
T ss_pred ECHHHHHHHHHHHHHHHhcCCCCCEEEEEECC-----CCCHHH----------------HHHHHHHHHhcCCCEEEEEcc
Confidence 88899999999999887655567777644322 443321 124556788889999999999
Q ss_pred ccccchhhhhhcccE--EEEeCCceeecCCCCccCCCCchHHH-----------------HHHHhhC--HHHHHHHHHcC
Q 020093 175 YAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSS-----------------IMSRLVG--PKKAREMWFLA 233 (331)
Q Consensus 175 ~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~-----------------~L~r~vG--~~~a~~l~ltG 233 (331)
.|..+|.-|+++||. |++.+++.+++.....|.. +. ..- .+.+..| .....+++-.+
T Consensus 150 ~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~~-G~-a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~~drd 227 (277)
T 1tg6_A 150 QAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGAR-GQ-ATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERD 227 (277)
T ss_dssp EEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCC-SS-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSC
T ss_pred EeHHHHHHHHHCCCcCCEEEecCCEEEEeccccccc-Cc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcC
Confidence 999999999999999 9999999999866543321 11 110 0111112 23344555455
Q ss_pred CCCCHHHHHhcCcccEecCCC
Q 020093 234 RFYTAEEAEKMGLVNTVVPLE 254 (331)
Q Consensus 234 ~~~~a~eA~~~GLv~~vv~~~ 254 (331)
..++++||+++||||+|....
T Consensus 228 ~~lta~EAle~GLID~I~~~~ 248 (277)
T 1tg6_A 228 RYMSPMEAQEFGILDKVLVHP 248 (277)
T ss_dssp EEECHHHHHHHTSCSEECSSC
T ss_pred cccCHHHHHHCCCCCEecCcc
Confidence 678999999999999999753
|
| >3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=6e-08 Score=84.82 Aligned_cols=137 Identities=16% Similarity=0.135 Sum_probs=96.1
Q ss_pred CCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEc
Q 020093 94 AFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVA 173 (331)
Q Consensus 94 al~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~ 173 (331)
.+++.+.+.+...|..++.++..+.|+|.=+. .|+++.. ...++..|..+++||++.+.
T Consensus 38 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~INS-----pGG~v~~----------------~~~I~~~i~~~~~~v~t~~~ 96 (201)
T 3p2l_A 38 EVNDHSANLVIAQLLFLESEDPDKDIYFYINS-----PGGMVTA----------------GMGVYDTMQFIKPDVSTICI 96 (201)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEE-----CCBCHHH----------------HHHHHHHHHHSSSCEEEEEE
T ss_pred EECHHHHHHHHHHHHHHHhcCCCCCEEEEEEC-----CCCCHHH----------------HHHHHHHHHHhCCCeEEEEc
Confidence 38899999999999999876666666654332 2444321 12456678888999999999
Q ss_pred CccccchhhhhhcccE--EEEeCCceeecCCCCccCCCCchHHH------H-----------HHHhhC--HHHHHHHHHc
Q 020093 174 GYAVGGGHVLHMVCDL--TIAADNAIFGQTGPKVGSFDAGYGSS------I-----------MSRLVG--PKKAREMWFL 232 (331)
Q Consensus 174 G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~------~-----------L~r~vG--~~~a~~l~lt 232 (331)
|.|.++|.-|+++||. |++.+++.+.+....-|. - +-..- . +.+..| .....+++-.
T Consensus 97 G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~-~-G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~~~~ 174 (201)
T 3p2l_A 97 GLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGF-R-GQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDR 174 (201)
T ss_dssp EEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEE-E-EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSS
T ss_pred CEehhHHHHHHHcCccCCEEEcCCCeEEEecccccc-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhhc
Confidence 9999999999999998 999999999887665332 1 11110 0 111122 2233444433
Q ss_pred CCCCCHHHHHhcCcccEecCC
Q 020093 233 ARFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 233 G~~~~a~eA~~~GLv~~vv~~ 253 (331)
...++|+||+++||||+|++.
T Consensus 175 ~~~lta~EA~e~GliD~I~~~ 195 (201)
T 3p2l_A 175 DNFMMADEAKAYGLIDHVIES 195 (201)
T ss_dssp CEEEEHHHHHHHTSCSEECCC
T ss_pred CeeecHHHHHHcCCccEecCC
Confidence 456799999999999999975
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.6e-06 Score=83.11 Aligned_cols=259 Identities=15% Similarity=0.107 Sum_probs=171.7
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHhcc-cCCCeeEEEEEeCCCCceeccc
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRR-------------NAFRPHTVKELIRAFNDAR-DDSSVGVIILTGKGTEAFCSGG 133 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~-------------Nal~~~~~~eL~~al~~~~-~d~~v~~vVl~g~g~~~FcaG~ 133 (331)
|..+....+...+++.++...|..- +..-..|..||.+++..+. ++.+|...++...|+..---..
T Consensus 265 y~~~~~ai~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~~~~~~t~g~~~~~~~~ 344 (556)
T 2w3p_A 265 YKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDARHLLAA 344 (556)
T ss_dssp ETTEEEEEETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHhHhhhhccCCHHHHhhh
Confidence 3334443433778999999987642 2233457888977777665 5578999999888852100001
Q ss_pred cccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEE-cCccccch-hhhhhcccEEEEeC-------CceeecCCCC
Q 020093 134 DQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV-AGYAVGGG-HVLHMVCDLTIAAD-------NAIFGQTGPK 204 (331)
Q Consensus 134 Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav-~G~a~GgG-~~Lal~cD~~ia~~-------~a~f~~pe~~ 204 (331)
|--........ ........+.+.+.+|--.+.-++|.| .|.|+.|- +||+++||..++-+ .+.+.+.+.+
T Consensus 345 ~~~~~~~~~~~-~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (556)
T 2w3p_A 345 DASLMQHKDHW-FVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVN 423 (556)
T ss_dssp HHHHHHTTTSH-HHHHHHHHHHHHHHHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCCEECCGGG
T ss_pred HHHHHhccchH-HHHHHHHHHHHHHHHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCceeEeeccc
Confidence 10000000000 000001123456667778888899999 68998776 59999999999863 3789999999
Q ss_pred ccCCCCchHHHHHHHhh-CHHHHH--HHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHH
Q 020093 205 VGSFDAGYGSSIMSRLV-GPKKAR--EMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSA 281 (331)
Q Consensus 205 ~Gl~p~~g~~~~L~r~v-G~~~a~--~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~ 281 (331)
+|.+|..-+..+|.++. |..-.. --...|+++++++|.++|||+...++=+.+++++-..++=++.||.++..+...
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (556)
T 2w3p_A 424 FGLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDDIDWADEIRIALEERAAMSPDALTGLEAN 503 (556)
T ss_dssp GTTSCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSSSBCCCTTTHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred cCcccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCeecCcccCChHHHHHHHHHHHhccCcchhccchhh
Confidence 99999888888887764 322222 123359999999999999999998888899999999999999999999999999
Q ss_pred HHcccc-Cch-hHHHHHHHHHHHHhCChhH---HHHHHHHhcCCCCCCCCC
Q 020093 282 LNAVDD-GHA-GLQTLGGDATLIFYGTEEG---SEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 282 l~~~~~-~~~-~~~~~~~~~~~~~~~s~d~---~egi~aflekr~p~f~~~ 327 (331)
++-.-. ... .....-...+...++.|+. +.+++.|=...++.|.-.
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (556)
T 2w3p_A 504 LRFNGPETMETRIFGRLTAWQNWIFNRPNAVGEKGALKVYGKGSKAQFDVS 554 (556)
T ss_dssp HSSCSCCCHHHHHHTHHHHHHHHHHTSHHHHSTTSHHHHTTTTCCCCCCCC
T ss_pred cccCCchhhhhHHHHHhHHHHHHhhcCCCCCCCCcchhhcCCCccCcCCcc
Confidence 886432 111 1111111122334555654 356777777788888643
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1e-06 Score=89.01 Aligned_cols=87 Identities=18% Similarity=0.215 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcccCCCeeEEEEEeCCCCceecc-ccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEEcCccc
Q 020093 99 TVKELIRAFNDARDDSSVGVIILTGKGTEAFCSG-GDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAV 177 (331)
Q Consensus 99 ~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG-~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~ 177 (331)
...++.+.|+.+++|+.++.|+|.-+.+ | +++... ..+++.+..+....|||||.+++ +.
T Consensus 71 ~~~~i~~~L~~a~~d~~ik~I~L~insp-----GgG~v~~~-------------~~I~~~i~~~k~~gkpvva~~~~-aa 131 (593)
T 3bf0_A 71 SLFDIVNTIRQAKDDRNITGIVMDLKNF-----AGGDQPSM-------------QYIGKALKEFRDSGKPVYAVGEN-YS 131 (593)
T ss_dssp EHHHHHHHHHHHHHCTTCCCEEEECTEE-----EECCHHHH-------------HHHHHHHHHHHHTTCCEEEEESC-EE
T ss_pred CHHHHHHHHHHHHhCCCceEEEEEeCCC-----CCCcHHHH-------------HHHHHHHHHHHhcCCeEEEEEcc-ch
Confidence 4678889999999999999999987543 4 555321 12445556666667999999876 66
Q ss_pred cchhhhhhcccEEEEeCCceeecCCCC
Q 020093 178 GGGHVLHMVCDLTIAADNAIFGQTGPK 204 (331)
Q Consensus 178 GgG~~Lal~cD~~ia~~~a~f~~pe~~ 204 (331)
-+|+-|+++||-+++.+.+.++...+.
T Consensus 132 s~~y~lAsaad~i~~~P~~~vg~~g~~ 158 (593)
T 3bf0_A 132 QGQYYLASFANKIWLSPQGVVDLHGFA 158 (593)
T ss_dssp HHHHHHHTTSSEEEECTTCCEECCCCB
T ss_pred hHHHHHHHhCCEEEECCCceEEEeccc
Confidence 788999999999999999999986654
|
| >4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A | Back alignment and structure |
|---|
Probab=98.34 E-value=3.2e-06 Score=73.86 Aligned_cols=153 Identities=15% Similarity=0.179 Sum_probs=98.3
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCee--EEEEEeCCCCc----eeccccccchhcCCCcchhhhhh
Q 020093 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVG--VIILTGKGTEA----FCSGGDQALRTRDGYADYENFGR 151 (331)
Q Consensus 78 ~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~--~vVl~g~g~~~----FcaG~Dl~~~~~~~~~~~~~~~~ 151 (331)
+++|.. |+-| ++.++...+...|..++.++..+ .|.|-+.|. . .-.-+|+.
T Consensus 27 ~~Riif--l~~~-----I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~-~~~~~~~~~G~v~--------------- 83 (205)
T 4gm2_A 27 SKRIIF--LSSP-----IYPHISEQIISQLLYLEYESKRKPIHLYINSTGD-IDNNKIINLNGIT--------------- 83 (205)
T ss_dssp TTTEEE--ECSC-----CCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTT-EETTEESCTTHHH---------------
T ss_pred cCCEEE--ECCE-----EcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCC-CCcCCCCCCCCHH---------------
Confidence 455554 4444 88999999999998887543223 233455551 1 00001111
Q ss_pred hhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhccc--EEEEeCCceeecCCCCccC-C---CCchH-HHH--------
Q 020093 152 LNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGS-F---DAGYG-SSI-------- 216 (331)
Q Consensus 152 ~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl-~---p~~g~-~~~-------- 216 (331)
.-..++..|...+.||...+-|.|.+.|..|++++| .|++.+++++-+-.+..|. . .+.-- ...
T Consensus 84 -aglaIyd~m~~~~~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i 162 (205)
T 4gm2_A 84 -DVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKV 162 (205)
T ss_dssp -HHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCCEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHH
Confidence 123566678888999999999999999999999999 5999999999886665443 1 11100 001
Q ss_pred ---HHHhhC--HHHHHHHHHcCCCCCHHHHHhcCcccEecCCC
Q 020093 217 ---MSRLVG--PKKAREMWFLARFYTAEEAEKMGLVNTVVPLE 254 (331)
Q Consensus 217 ---L~r~vG--~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~ 254 (331)
+.+..| .....+++-....++|+||+++||||+|+..|
T Consensus 163 ~~iya~~TG~~~e~I~~~m~rd~~msa~EA~eyGlID~V~~~e 205 (205)
T 4gm2_A 163 IEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEKE 205 (205)
T ss_dssp HHHHHHHHTCCHHHHHHHTTSCEEEEHHHHHHTTSCSEECCC-
T ss_pred HHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCccEeecCC
Confidence 111112 22334444455679999999999999998753
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=98.26 E-value=4e-06 Score=84.17 Aligned_cols=168 Identities=17% Similarity=0.153 Sum_probs=110.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHH
Q 020093 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ 160 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (331)
|.++-.+.--+.-++.+...+.+.++++.+.+. .+=+|.|.-. +|+.+.+-...-. ..... -.+..-...
T Consensus 107 v~v~a~D~t~~gGs~g~~~~~Ki~r~~e~A~~~-~lPvI~l~dS------gGArlqe~~~~l~-~~~~~--g~i~~~~~~ 176 (587)
T 1pix_A 107 CVVVASDNKKLAGAWVPGQAECLLRASDTAKTL-HVPLVYVLNC------SGVKFDEQEKVYP-NRRGG--GTPFFRNAE 176 (587)
T ss_dssp EEEEEECTTTTTTEECTTHHHHHHHHHHHHHHH-TCCEEEEECC------CEECGGGHHHHSS-STTST--THHHHHHHH
T ss_pred EEEEEECCccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeC------CCCCccccchhcc-ccccH--HHHHHHHHH
Confidence 444444443356788999999999999888765 3556666543 3566644211000 00000 112233456
Q ss_pred HHcCCCcEEEEEcCccccchhhhhhcccEEEEeC-CceeecCCCCc--cCCCCchHHHHHHHhhCHHHHHHHH-HcCCCC
Q 020093 161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD-NAIFGQTGPKV--GSFDAGYGSSIMSRLVGPKKAREMW-FLARFY 236 (331)
Q Consensus 161 l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~-~a~f~~pe~~~--Gl~p~~g~~~~L~r~vG~~~a~~l~-ltG~~~ 236 (331)
+.....|+|++|.|.|.|||... ..||++|+++ ++.+++....+ ++-+- -.++..+|.+++ .+|+.+
T Consensus 177 ls~~giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~vi~~~~~~--------~~~d~~~A~el~~~tge~v 247 (587)
T 1pix_A 177 LNQLGIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAGIMGGMNPK--------GHVDLEYANEIADMVDRTG 247 (587)
T ss_dssp HHHTTCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCCTTCCSCCSS--------SSCCHHHHHHHHHHHHTTC
T ss_pred HhCCCCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCHHHHhhhccc--------cccchhHHHHHHHHhCCcc
Confidence 77889999999999999999999 9999998886 49998854432 11110 126889999999 899888
Q ss_pred CHHH-----H--HhcCcccEecCCCcHHHHHHHHHHHHhcc
Q 020093 237 TAEE-----A--EKMGLVNTVVPLEKLEQETIKWSREILRN 270 (331)
Q Consensus 237 ~a~e-----A--~~~GLv~~vv~~~~l~~~a~~~a~~la~~ 270 (331)
++++ . .+.|++|.++++++ ++.+.++++.+.
T Consensus 248 ~~e~lgga~~h~~~~GvvD~vv~~e~---~a~~~~r~~ls~ 285 (587)
T 1pix_A 248 KTEPPGAVDIHYTETGFMREVYASEE---GVLEGIKKYVGM 285 (587)
T ss_dssp CCCCSSBHHHHTTTSCCSCEEESSHH---HHHHHHHHHHHT
T ss_pred ChhhcccHHHHHhhcCceeEecCCHH---HHHHHHHHHHHh
Confidence 7665 2 36999999998865 445555555443
|
| >2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0002 Score=65.66 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=100.9
Q ss_pred CCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh-hhhhhHH
Q 020093 78 GEG-IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN-FGRLNVL 155 (331)
Q Consensus 78 ~~~-v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~-~~~~~~~ 155 (331)
+|. |+++..|.--..-+++....+.+.++++.+.+. .+=+|.|.-.|+ + -..+ .... .....+.
T Consensus 119 ~G~~V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~-~lPlI~l~dsgG-a-----r~qE-------Gi~sl~q~aki~ 184 (285)
T 2f9i_B 119 DGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTEN-RLPFILFSASGG-A-----RMQE-------GIISLMQMGKTS 184 (285)
T ss_dssp TTEEEEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEECS-C-----CGGG-------HHHHHHHHHHHH
T ss_pred CCEEEEEEEEccccccCcCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCC-c-----chhh-------hhhhHhHHHHHH
Confidence 443 444444332245689999999999999988765 466777766552 2 1111 0000 0111233
Q ss_pred HHHHHHHcCCCcEEEEEcCccccchhhh-hhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCC
Q 020093 156 DLQVQIRRLPKPVIAMVAGYAVGGGHVL-HMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLAR 234 (331)
Q Consensus 156 ~l~~~l~~~~kPvIAav~G~a~GgG~~L-al~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~ 234 (331)
..+.++.....|.|+.|.|.|.||+... ++.+|++++.++|.+++....+ ....++... .-+
T Consensus 185 ~~l~~~s~~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~aGP~v-----------i~~~~~~~~------~e~ 247 (285)
T 2f9i_B 185 VSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRV-----------IEQTINEKL------PDD 247 (285)
T ss_dssp HHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHHH-----------HHHHHTSCC------CTT
T ss_pred HHHHHHHcCCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEcCHHH-----------HHHHhcccc------hHh
Confidence 4556667789999999999999999654 8899999999999888732221 111122110 111
Q ss_pred CCCHHHHHhcCcccEecCCCcHHHHHHHHHHHH
Q 020093 235 FYTAEEAEKMGLVNTVVPLEKLEQETIKWSREI 267 (331)
Q Consensus 235 ~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l 267 (331)
.-+++.+.+.|+||.|++++++.+...++...+
T Consensus 248 ~~~Ae~~~~~G~iD~Iv~~~e~r~~l~~~L~~l 280 (285)
T 2f9i_B 248 FQTAEFLLEHGQLDKVVHRNDMRQTLSEILKIH 280 (285)
T ss_dssp TTBHHHHHHTTCCSEECCGGGHHHHHHHHHHHT
T ss_pred HhhHHHHHhcCCccEEeChHHHHHHHHHHHHHh
Confidence 224677789999999999888777766665543
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00016 Score=71.67 Aligned_cols=152 Identities=14% Similarity=0.087 Sum_probs=100.4
Q ss_pred CCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp-~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
++.-..|.-|.+ =+.-++.....+.+.++++.+.+. .+=+|.|.-.| |..+.+- ... ...+.+
T Consensus 95 ~Gr~v~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~dSg------GaRmqEg-------~~~--l~~~~~ 158 (530)
T 3iav_A 95 DGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKT-GCPVVGINDSG------GARIQEG-------VAS--LGAYGE 158 (530)
T ss_dssp TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC------SBCGGGT-------HHH--HHHHHH
T ss_pred CCEEEEEEEECCCcceEeccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC------Ccchhhh-------hhh--HHHHHH
Confidence 444334444443 356789999999999999888765 45677776544 4444320 001 111223
Q ss_pred HHHHHHcC--CCcEEEEEcCccccchhhhhhcccEEEEeCC-ceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcC
Q 020093 157 LQVQIRRL--PKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLA 233 (331)
Q Consensus 157 l~~~l~~~--~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG 233 (331)
++..+.++ -.|+|++|.|.|.|||......||++|++++ +.+++. |+...+ ..+|
T Consensus 159 i~~~~~~~s~~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~a--------------------GP~vi~--~~~g 216 (530)
T 3iav_A 159 IFRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPDVIK--TVTG 216 (530)
T ss_dssp HHHHHHHTTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHH--HHHC
T ss_pred HHHHHHHHcCCCCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEec--------------------CHHHHH--HHhC
Confidence 33333332 3899999999999999998889999999975 888762 222222 1578
Q ss_pred CCCCHHHH-------HhcCcccEecCCC-cHHHHHHHHHHHH
Q 020093 234 RFYTAEEA-------EKMGLVNTVVPLE-KLEQETIKWSREI 267 (331)
Q Consensus 234 ~~~~a~eA-------~~~GLv~~vv~~~-~l~~~a~~~a~~l 267 (331)
+.+++++. ...|++|.++++| +..+.+.++...|
T Consensus 217 e~v~~e~LGGa~~h~~~sGv~d~va~de~~a~~~~r~~ls~l 258 (530)
T 3iav_A 217 EDVGFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYL 258 (530)
T ss_dssp CCCCHHHHHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHHHS
T ss_pred CcCChhhcchHHHHHhccCceeEEecChHHHHHHHHHHHHhc
Confidence 88998875 6899999999876 3555555555554
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00057 Score=67.70 Aligned_cols=150 Identities=15% Similarity=0.155 Sum_probs=96.8
Q ss_pred CCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEG-IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~-v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
++. |.++..+.--+.-++.....+.+.++++.+.+. .+=+|.|.-.| |+.+.+- ... ...+.+
T Consensus 103 ~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dSG------GARmqeg-------~~s--l~~~~~ 166 (531)
T 3n6r_B 103 NGRVVYVFSQDFTVLGGSVSETHSKKICKIMDMAMQN-GAPVIGINDSG------GARIQEG-------VDS--LAGYGE 166 (531)
T ss_dssp TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC------CBCGGGT-------HHH--HHHHHH
T ss_pred CCEEEEEEEECCCcccccccHHHHHHHHHHHHHHHHc-CCCEEEEeCCC------ccccCcc-------cch--hhhHHH
Confidence 444 343444333356789999999999999987764 35567665544 4444331 000 001112
Q ss_pred HHHHHH--cCCCcEEEEEcCccccchhhhhhcccEEEEeCC-ceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcC
Q 020093 157 LQVQIR--RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLA 233 (331)
Q Consensus 157 l~~~l~--~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG 233 (331)
.+..+. .-..|+|++|.|.|.|||......||++|+.++ +.+++. |+...+ ..+|
T Consensus 167 i~~~~~~~s~~iP~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~a--------------------GP~vI~--~~~g 224 (531)
T 3n6r_B 167 VFQRNIMASGVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVT--------------------GPDVVK--TVTN 224 (531)
T ss_dssp HHHHHHHTTTTSCEEEEECSCCBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHHHH--HHHC
T ss_pred HHHHHHHHhCCCCEEEEEeCCcchHHHHHhhhCCEEEEecCCceEeec--------------------CHHHHH--HHhC
Confidence 222222 235899999999999999988888999999985 776651 222111 2578
Q ss_pred CCCCHHHH-------HhcCcccEecCCCcHHHHHHHHHHHHh
Q 020093 234 RFYTAEEA-------EKMGLVNTVVPLEKLEQETIKWSREIL 268 (331)
Q Consensus 234 ~~~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la 268 (331)
+.+++++. .+.|++|.++++|+ ++.+.++++.
T Consensus 225 e~v~~E~LGGa~~h~~~sG~~d~v~~~e~---~a~~~~r~ll 263 (531)
T 3n6r_B 225 EQVSAEELGGATTHTRKSSVADAAFENDV---EALAEVRRLV 263 (531)
T ss_dssp CCCCHHHHHBHHHHHHTTSCCSEEESSHH---HHHHHHHHHH
T ss_pred CccChhhcchHHHHhhccCcceEEeCCHH---HHHHHHHHHH
Confidence 99999998 89999999998754 3444444444
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00039 Score=68.93 Aligned_cols=153 Identities=16% Similarity=0.114 Sum_probs=98.3
Q ss_pred CCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEG-IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~-v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
++. |+++-.+--=..-++.....+.+.++++.+.+. .+-+|.|.-.| |..+.+-. ... ..+.+
T Consensus 93 ~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~~SG------GARmqeg~-------~sl--~~~~~ 156 (523)
T 1on3_A 93 LGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLT-GTPFLFFYDSG------GARIQEGI-------DSL--SGYGK 156 (523)
T ss_dssp TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEEEC------SBCGGGTH-------HHH--HHHHH
T ss_pred CCEEEEEEEEcCCccCCcCcHHHHHHHHHHHHHHHHc-CCCEEEEEcCC------CCChhhHH-------HHH--HHHHH
Confidence 444 444444433356789999999999999888765 45677776533 55554311 000 01112
Q ss_pred HHHHHH--cCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCC
Q 020093 157 LQVQIR--RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLAR 234 (331)
Q Consensus 157 l~~~l~--~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~ 234 (331)
++.++. .-..|+|++|.|+|.||+......||++|+.+++.+++. |+...+. .+|+
T Consensus 157 i~~~~~~~s~~iP~Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~~a--------------------GP~vI~~--~~ge 214 (523)
T 1on3_A 157 MFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFIT--------------------GPQVIKS--VTGE 214 (523)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESS--------------------CHHHHHH--HHCC
T ss_pred HHHHHHHhcCCCCEEEEEcCCCchHHHHHHhhCCeEEEeCCCEEEec--------------------CHHHHHH--HhCC
Confidence 222222 345999999999999999999999999999999988863 2221111 4577
Q ss_pred CCCHH-----HHH--hcCcccEecCCC-cHHHHHHHHHHHHh
Q 020093 235 FYTAE-----EAE--KMGLVNTVVPLE-KLEQETIKWSREIL 268 (331)
Q Consensus 235 ~~~a~-----eA~--~~GLv~~vv~~~-~l~~~a~~~a~~la 268 (331)
.++.+ |.+ +.|++|.+++++ ++.+.+.++...+-
T Consensus 215 ~~~~e~lggae~h~~~~G~vd~vv~d~~~~~~~~r~lL~~lp 256 (523)
T 1on3_A 215 DVTADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLP 256 (523)
T ss_dssp CCCHHHHHSHHHHHHTTCCCSEEESSHHHHHHHHHHHHHTSC
T ss_pred cCChHhcccHHHHhhccCceEEEeCCHHHHHHHHHHHHHhcC
Confidence 77764 323 699999999864 45555555554443
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00085 Score=66.53 Aligned_cols=153 Identities=17% Similarity=0.113 Sum_probs=98.5
Q ss_pred CCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp-~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
++.-..|.-+.. =..-++.....+.+..+++.+.+. .+-+|.|...| |+.+.+-. ... ..+.+
T Consensus 89 ~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~~P~I~l~~SG------GaRmqeg~-------~sl--~~~~~ 152 (522)
T 1x0u_A 89 DGRTVFAYAQDFTVLGGSLGETHANKIVRAYELALKV-GAPVVGINDSG------GARIQEGA-------LSL--EGYGA 152 (522)
T ss_dssp TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC------SBCGGGTH-------HHH--HHHHH
T ss_pred CCEEEEEEEecCceeCccccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC------CCChhHHH-------HHH--HHHHH
Confidence 444333444443 356789999999999999888764 56677776544 55554311 000 01112
Q ss_pred HHHHHH--cCCCcEEEEEcCccccchhhhhhcccEEEEeCC-c-eeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHc
Q 020093 157 LQVQIR--RLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-A-IFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFL 232 (331)
Q Consensus 157 l~~~l~--~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~-a-~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~lt 232 (331)
++.++. .-..|+|++|.|+|.||+......||++|+.++ + .+++. |+...+. .+
T Consensus 153 i~~~~~~~s~~iP~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~a--------------------GP~vI~~--~~ 210 (522)
T 1x0u_A 153 VFKMNVMASGVIPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFVT--------------------GPEITKV--VL 210 (522)
T ss_dssp HHHHHHHHTTTSCEEEEECSEEEGGGGHHHHHSSEEEEECSTTCEEESS--------------------CHHHHHH--TT
T ss_pred HHHHHHHhCCCCcEEEEEcCCCchHHHHHHhcCCeEEEecCCccEEEec--------------------CHHHHHH--Hh
Confidence 222222 345999999999999999999999999999988 7 77762 2211111 46
Q ss_pred CCCCCHH-----HHH--hcCcccEecCCC-cHHHHHHHHHHHHh
Q 020093 233 ARFYTAE-----EAE--KMGLVNTVVPLE-KLEQETIKWSREIL 268 (331)
Q Consensus 233 G~~~~a~-----eA~--~~GLv~~vv~~~-~l~~~a~~~a~~la 268 (331)
|+.++.+ |.+ +.|++|.+++++ ++.+.+.++...+-
T Consensus 211 ge~~~~e~lggae~~~~~~G~~d~vv~~~~~~~~~~~~ll~~lp 254 (522)
T 1x0u_A 211 GEEVSFQDLGGAVVHATKSGVVHFMVDSEQEAINLTKRLLSYLP 254 (522)
T ss_dssp CCCCCHHHHHBHHHHHHTTCCCSEEESCHHHHHHHHHHHHHHSC
T ss_pred CCcCChhhcchHHHHhhcCceeEEEeCCHHHHHHHHHHHHHhcc
Confidence 7777764 223 699999999864 45566666655544
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0016 Score=64.77 Aligned_cols=151 Identities=14% Similarity=0.024 Sum_probs=96.7
Q ss_pred CCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRP-DRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp-~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
++.-..|.-|.. =+.-++.....+.+.++++.+.+. .+-+|.|.-.| |+.+.+-. ..+ ..+.+
T Consensus 106 ~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~dSG------GARmqeg~-------~sl--~~~~~ 169 (548)
T 2bzr_A 106 DGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKT-GRPLIGINDGA------GARIQEGV-------VSL--GLYSR 169 (548)
T ss_dssp TTEEEEEEEECTTSGGGCCCHHHHHHHHHHHHHHHHH-TCCEEEEECCC------SCCGGGTT-------HHH--HHHHH
T ss_pred CCEEEEEEEEcCccccCCCChhHHHHHHHHHHHHHHc-CCCEEEEEcCC------CCCchhHH-------HHH--HHHHH
Confidence 444333444433 356789999999999999988765 46677776544 55554311 011 11223
Q ss_pred HHHHHHc--CCCcEEEEEcCccccchhhhhhcccEEEEeCC-ceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcC
Q 020093 157 LQVQIRR--LPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLA 233 (331)
Q Consensus 157 l~~~l~~--~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG 233 (331)
++.++.+ -..|.|++|.|+|.||+......||++|+.++ +.+++. |+...+. .+|
T Consensus 170 i~~~~~~~s~~iP~Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~~a--------------------GP~vI~~--~~g 227 (548)
T 2bzr_A 170 IFRNNILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT--------------------GPDVIKT--VTG 227 (548)
T ss_dssp HHHHHHHTTTTSCEEEEECSEEESGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHHH--HHC
T ss_pred HHHHHHHhcCCCcEEEEecCCCchHHHHHHHhCCeEEeccCceeEEec--------------------cHHHHHH--HhC
Confidence 3333333 34999999999999999988889999999987 888763 2222221 457
Q ss_pred CCCCHH-----H--HHhcCcccEecCCC-cHHHHHHHHHHH
Q 020093 234 RFYTAE-----E--AEKMGLVNTVVPLE-KLEQETIKWSRE 266 (331)
Q Consensus 234 ~~~~a~-----e--A~~~GLv~~vv~~~-~l~~~a~~~a~~ 266 (331)
+.++.+ | +.+.|++|.+++++ ++.+.+.++...
T Consensus 228 e~v~~e~lggae~h~~~sG~~d~vv~d~~~~~~~~r~lls~ 268 (548)
T 2bzr_A 228 EEVTMEELGGAHTHMAKSGTAHYAASGEQDAFDYVRELLSY 268 (548)
T ss_dssp CCCCHHHHHBHHHHHHTSSCCSEEESSHHHHHHHHHHHHTT
T ss_pred CcCChHhcccHHHHhhccCceeEEeCCHHHHHHHHHHHHHh
Confidence 777764 2 23699999999864 344444444433
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=97.57 E-value=0.002 Score=64.08 Aligned_cols=153 Identities=21% Similarity=0.274 Sum_probs=96.3
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHH
Q 020093 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ 160 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (331)
|.++..+.--+.-++.....+.+.++++.+.+. .+=+|.|.-.| |..+.+-.. ........ ..+..-...
T Consensus 123 v~V~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dSg------GARl~~q~~-~~~~~~~~--~~i~~~~~~ 192 (555)
T 3u9r_B 123 CMIVGNDATVKGGTYYPLTVKKHLRAQAIALEN-RLPCIYLVDSG------GANLPRQDE-VFPDREHF--GRIFFNQAN 192 (555)
T ss_dssp EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC------CBCGGGGGG-TSSSTTST--THHHHHHHH
T ss_pred EEEEEECCccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEECCC------CCCCCCcce-eecccccH--HHHHHHHHH
Confidence 444444443356788999999999999988765 45566665544 333211000 00000000 112222335
Q ss_pred HHcCCCcEEEEEcCccccchhhhhhcccEEEEeC-CceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHH
Q 020093 161 IRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD-NAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAE 239 (331)
Q Consensus 161 l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~ 239 (331)
+.....|+|++|.|.|.|||......||++|+.+ ++.+++. |+...+ ..+|+.++++
T Consensus 193 ls~~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~~a--------------------GP~vik--~~~ge~~~~e 250 (555)
T 3u9r_B 193 MSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFLA--------------------GPPLVK--AATGEVVSAE 250 (555)
T ss_dssp HHHTTCCEEEEECSCCBGGGGHHHHTSSEEEEETTTCBCBSS--------------------CHHHHH--HHHCCCCCHH
T ss_pred HhcCCCCEEEEEecCCCccHHHHHHhCCceEEecCCceEEEc--------------------cHHHHH--HHhcCccChh
Confidence 5667899999999999999999999999988775 4655431 221111 1578999999
Q ss_pred HH-------HhcCcccEecCCCcHHHHHHHHHHHHh
Q 020093 240 EA-------EKMGLVNTVVPLEKLEQETIKWSREIL 268 (331)
Q Consensus 240 eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la 268 (331)
+. .+.|++|.++++|+ .+...++++.
T Consensus 251 ~LGGa~~h~~~sGv~d~v~~de~---~a~~~~r~~l 283 (555)
T 3u9r_B 251 ELGGADVHCKVSGVADHYAEDDD---HALAIARRCV 283 (555)
T ss_dssp HHHBHHHHHHTTCSCSEEESSHH---HHHHHHHHHH
T ss_pred hccchhhhhhccCceeEEeCCHH---HHHHHHHHHH
Confidence 88 78999999998764 3444444443
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00081 Score=66.67 Aligned_cols=171 Identities=16% Similarity=0.186 Sum_probs=106.4
Q ss_pred CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~-~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
++.-..|.-|+|. ..-+++.+..+.+.+.++.+++ .++=+|.|.-.++ |..|.+-... .. .....+
T Consensus 323 ~G~~V~via~d~~~~gG~l~~~~~~K~ar~i~~a~~-~~~Plv~l~ds~G--~~~G~~~E~~---------G~-~~~~Ak 389 (522)
T 1x0u_A 323 AGNVVGIVANNPEEFGGSIDIDAADKAARFIRFCDA-FNIPLISLVDTPG--YVPGTDQEYK---------GI-IRHGAK 389 (522)
T ss_dssp TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEECC--BCCSHHHHHT---------TH-HHHHHH
T ss_pred CCEEEEEEEECCCccCCCcCHHHHHHHHHHHHHHhh-CCCCEEEEecCCC--CCCchHHHHH---------HH-HHHHHH
Confidence 4443344444444 3357999999999999998865 4567777766552 5444322110 11 113445
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhh----cccEEEEeCCceeecCCCCccCCCCchHHHHHHHhh-CH----HHH-
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHM----VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV-GP----KKA- 226 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal----~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v-G~----~~a- 226 (331)
++..+.....|+|+.|-|.|.|||+-... .+|+++|.+++.+++-. +-+.+..+.+.. -. ...
T Consensus 390 ~l~~~~~~~vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v~g-------pegaa~Il~r~~i~~~~d~~~~~ 462 (522)
T 1x0u_A 390 MLYAFAEATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVTG-------PEGAVRILYRKEIQQASNPDDVL 462 (522)
T ss_dssp HHHHHHHCCSCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTTCEEESSC-------HHHHHHHHTSSSSSSSSSSSSSS
T ss_pred HHHHHHhCCCCEEEEEeCCcccHHHHHhcccccCCCEEEEeCCCEEEecC-------HHHHHHHHhhhhhhcccCHHHHH
Confidence 67788899999999999999999774443 49999999998887632 222333333221 10 000
Q ss_pred HHHH--HcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHh
Q 020093 227 REMW--FLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREIL 268 (331)
Q Consensus 227 ~~l~--ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la 268 (331)
.++. +.-..-++..+.+.|+||.|+++.++.+...+..+.+.
T Consensus 463 ~~l~~~y~~~~~~~~~~~~~G~iD~II~p~~tR~~L~~~L~~~~ 506 (522)
T 1x0u_A 463 KQRIAEYRKLFANPYWAAEKGLVDDVIEPKDTRRVIVAGLEMLK 506 (522)
T ss_dssp HHHHHHHHHHHSSSHHHHHTTSSSEECCGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHhcCCCcEeECHHHHHHHHHHHHHHHh
Confidence 0011 00112456779999999999999887776666555543
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.005 Score=61.02 Aligned_cols=171 Identities=13% Similarity=0.132 Sum_probs=105.8
Q ss_pred CCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRPDR-RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~~-~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
++.-..|.=|+|.. .-.++++-.....+.++.++. .++=+|.|.=.. .|..|.+-+... ......+
T Consensus 328 ~G~~V~via~~~~~~~G~~~~~~~~Kaar~i~~a~~-~~~Plv~lvDtp--G~~~G~~~E~~g----------~~~~~A~ 394 (527)
T 1vrg_A 328 QGKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDA-FNIPILTFVDTP--GYLPGVAQEHGG----------IIRHGAK 394 (527)
T ss_dssp TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEEC--CBCCCHHHHHTT----------HHHHHHH
T ss_pred CCEEEEEEEEcCcccCCCCCHHHHHHHHHHHHHHhh-cCCCeEEEecCC--CCcCchhhHHhH----------HHHHHHH
Confidence 44444444455542 347999999999999988764 456666665543 355554322111 1122446
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhhc----ccEEEEeCCceeecCCCCccCCCCchHHHHHHHhh-----CHHHHH
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMV----CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV-----GPKKAR 227 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal~----cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v-----G~~~a~ 227 (331)
++..+.....|+|+.|-|.|.|||+.-... +|+++|.++++++. +++-+.+..+.+.- -+...+
T Consensus 395 ~~~a~~~~~vP~isvI~g~~~gGg~~am~~~~~~~d~~~a~p~a~~~V-------m~pegaa~Il~r~~~~~~~d~~~~~ 467 (527)
T 1vrg_A 395 LLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAV-------MGPEGAANIIFKREIEASSNPEETR 467 (527)
T ss_dssp HHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHHSSCHHHHH
T ss_pred HHHHHhcCCCCEEEEEeCCcccHHHHHhcCCCCCCCEEEEcCCCeEEe-------cCHHHHHHHHhhhhhhcccCHHHHH
Confidence 777888999999999999998888743333 89998888887775 33344444443321 011111
Q ss_pred H-HH--HcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHh
Q 020093 228 E-MW--FLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREIL 268 (331)
Q Consensus 228 ~-l~--ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la 268 (331)
+ +. +.-+.-++..+.+.|+||.|+++.++.+...+..+.+.
T Consensus 468 ~~~~~~y~~~~~~p~~~~~~g~iD~II~p~~tR~~l~~~L~~l~ 511 (527)
T 1vrg_A 468 RKLIEEYKQQFANPYIAASRGYVDMVIDPRETRKYIMRALEVCE 511 (527)
T ss_dssp HHHHHHHHHHTSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCCHHHHHHcCCCCeeeCHHHHHHHHHHHHHHHh
Confidence 1 22 11124677889999999999998777666555555443
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0059 Score=60.55 Aligned_cols=153 Identities=16% Similarity=0.167 Sum_probs=92.3
Q ss_pred CCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEG-IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~-v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
++. |.++-.+.-=+.-++.....+.+.++++.+.+. .+=+|.|.-.| |..+.+-.. ....+.. -+..
T Consensus 96 ~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~r~~e~A~~~-~lPvI~l~dSg------GAR~qeg~~----~l~g~~~-~~~~ 163 (527)
T 1vrg_A 96 NGRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKM-GIPVIGINDSG------GARIQEGVD----ALAGYGE-IFLR 163 (527)
T ss_dssp TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEEEC------SBCGGGTHH----HHHHHHH-HHHH
T ss_pred CCEEEEEEEEeccccCccccHHHHHHHHHHHHHHHHc-CCCEEEEECCC------CCCccchhH----HHHHHHH-HHHH
Confidence 444 444444433356789999999999999987765 34566665434 333332100 0000000 1112
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCC-ceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCC
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF 235 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~ 235 (331)
+ .......|+|+.|.|.|.|||......||++|+.++ +.+++. |+...+. .+|+.
T Consensus 164 ~--~~~s~~iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~~a--------------------GP~vi~~--~~ge~ 219 (527)
T 1vrg_A 164 N--TLASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFIT--------------------GPNVIKA--VTGEE 219 (527)
T ss_dssp H--HHHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHHHHH--HHCCC
T ss_pred H--HHhCCCCCEEEEEeCCCchHHHHHHHcCCeEEEecCceEEEec--------------------CHHHHHH--HhCCC
Confidence 2 122556999999999999999988889999999987 765541 2221111 45777
Q ss_pred CCHH-----HHH--hcCcccEecCCC-cHHHHHHHHHHH
Q 020093 236 YTAE-----EAE--KMGLVNTVVPLE-KLEQETIKWSRE 266 (331)
Q Consensus 236 ~~a~-----eA~--~~GLv~~vv~~~-~l~~~a~~~a~~ 266 (331)
++.+ |.+ +.|++|.+++++ ++.+.+.++...
T Consensus 220 v~~e~lggae~~~~~~G~vd~vv~d~~~~~~~~~~~Ls~ 258 (527)
T 1vrg_A 220 ISQEDLGGAMVHNQKSGNAHFLADNDEKAMSLVRTLLSY 258 (527)
T ss_dssp CCHHHHHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHTT
T ss_pred CCccccccHHHHhhcccceEEEecCHHHHHHHHHHHHHh
Confidence 7764 322 699999999864 344444444433
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0059 Score=61.11 Aligned_cols=176 Identities=15% Similarity=0.111 Sum_probs=99.4
Q ss_pred CCCEEEEEEcC-CCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINR-PDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnr-p~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
++.-+.|.-|. --+.-++.....+.+.++++.+.+. .+=+|.|.-.|+ ++.. +-.+... ...... .+..
T Consensus 104 ~Gr~V~V~a~D~tv~gGS~g~~~~~Ki~Ra~e~A~~~-~lPvI~l~dSgG-Arl~--~qe~~~~----~l~~~g--~if~ 173 (588)
T 3gf3_A 104 DGKWVYIVASDNKKMAGAWVPGQAENLIRCSDAAKMM-HLPLIYLLNCSG-VEFP--NQDKVYP----NRRGGG--TPFF 173 (588)
T ss_dssp TTEEEEEEEECTTSGGGCBCTTHHHHHHHHHHHHHHH-TCCEEEEECCCC-BCGG--GHHHHSS----STTSTT--HHHH
T ss_pred CCEEEEEEEECCcccCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEcCCC-cCcc--ccccccc----chhhHH--HHHH
Confidence 44433333343 3356788888899999999888765 355676655442 3331 0011000 000000 1122
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCc--cCCCCchHHHHHH--HhhCHHHHHHHHHc
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV--GSFDAGYGSSIMS--RLVGPKKAREMWFL 232 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~--Gl~p~~g~~~~L~--r~vG~~~a~~l~lt 232 (331)
-...+.....|+|++|-|.|.|||.-.++++|++++.+++.+++....+ |+-|. +..+.. ..+......+-..+
T Consensus 174 ~~~~ls~~~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~--g~~~~~~~~~~~~~~~ge~~vs 251 (588)
T 3gf3_A 174 RNSELNQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPK--GYIDDEAAEQIIAAQIENSKLK 251 (588)
T ss_dssp HHHHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC-----------------CHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCCEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCcc--ccccccchhhhhhhhccccccC
Confidence 2234556789999999999999988668899999999999999866553 11010 011100 00111111122246
Q ss_pred CCCCCHHHHH--hcCcccEecCCCcHHHHHHHHHHHHh
Q 020093 233 ARFYTAEEAE--KMGLVNTVVPLEKLEQETIKWSREIL 268 (331)
Q Consensus 233 G~~~~a~eA~--~~GLv~~vv~~~~l~~~a~~~a~~la 268 (331)
.+.+.+.+.+ ..|++|.++++|+ ++.+.++++.
T Consensus 252 ~eeLGGa~~h~~~sGv~d~~a~de~---~al~~~r~~l 286 (588)
T 3gf3_A 252 VPAPGSVPIHYDETGFFREVYQNDL---GVIDGIKKYI 286 (588)
T ss_dssp CCCTTBHHHHTTTSCCSCEEESSHH---HHHHHHHHHH
T ss_pred hhhccchhhhccccccceEEeCCHH---HHHHHHHHHH
Confidence 7788888777 5999999998764 3444444443
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.013 Score=58.04 Aligned_cols=171 Identities=16% Similarity=0.116 Sum_probs=106.4
Q ss_pred CCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRPDR-RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~~-~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
++.-.-|.=|+|.. .-.++++-.....+.++.++. .++=+|.|.=.- .|..|.+-+.. .. .....+
T Consensus 324 ~G~~Vgvian~~~~~~G~~~~~~a~Kaar~i~~~~~-~~iPlv~lvDtp--Gf~~G~~~E~~---------Gi-~~~~A~ 390 (523)
T 1on3_A 324 NGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDS-FNIPLVQLVDVP--GFLPGVQQEYG---------GI-IRHGAK 390 (523)
T ss_dssp TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEEC--CBCCCHHHHHT---------TH-HHHHHH
T ss_pred CCEEEEEEEecCCccCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeCC--CcCcchHHHHh---------hH-HHHHHH
Confidence 44444444555542 247999999999999988764 456666665543 36666443221 11 123456
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhhc----ccEEEEeCCceeecCCCCccCCCCchHHHHHHHhh-----CHHHHH
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMV----CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLV-----GPKKAR 227 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal~----cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v-----G~~~a~ 227 (331)
++..+.....|+|+.|-|.+.|||+.-... +|+++|.++++++. +++-+.+..+.+.- -....+
T Consensus 391 ~l~a~a~~~vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~V-------m~pegaa~Il~r~~~~~~~d~~~~~ 463 (523)
T 1on3_A 391 MLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAV-------MGAEGAANVIFRKEIKAADDPDAMR 463 (523)
T ss_dssp HHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHHSSCHHHHH
T ss_pred HHHHHhcCCCCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCCCeEEe-------cCHHHHHHHHhhhhhhcccCHHHHH
Confidence 777888999999999999999888744434 78988888887765 33344444443321 011111
Q ss_pred -HHHH--cCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHh
Q 020093 228 -EMWF--LARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREIL 268 (331)
Q Consensus 228 -~l~l--tG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la 268 (331)
++.- .-..-++..+.+.|+||.|+++.++.+...+..+.+.
T Consensus 464 ~~~~~~y~~~~~~p~~~a~~g~iD~II~p~~tR~~l~~~L~~l~ 507 (523)
T 1on3_A 464 AEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYA 507 (523)
T ss_dssp HHHHHHHHHHHSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhhCCHHHHHhcCCCCEeeCHHHHHHHHHHHHHHHh
Confidence 1211 1112566789999999999998777666555555443
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.021 Score=57.23 Aligned_cols=160 Identities=9% Similarity=0.093 Sum_probs=107.5
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 020093 92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (331)
Q Consensus 92 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa 171 (331)
.-.++++-.....+.++.++. .++=+|.|.-.. .|..|.+-... .. .....+++..+..+..|+|+.
T Consensus 384 ~G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDtp--Gf~~G~~~E~~---------Gi-~~~gA~~~~a~a~a~vP~itv 450 (587)
T 1pix_A 384 GGKLYRQGLVKMNEFVTLCAR-DRLPIVWIQDTT--GIDVGNDAEKA---------EL-LGLGQSLIYSIQTSHIPQFEI 450 (587)
T ss_dssp TTEECHHHHHHHHHHHHHHHH-TTCCEEEEECCC--EECCSHHHHHT---------TH-HHHHHHHHHHHHTCCCCEEEE
T ss_pred CCCcCHHHHHHHHHHHHHhhc-CCCCeEEEecCC--CCCCcHHHHHH---------HH-HHHHHHHHHHHHhCCCCEEEE
Confidence 457999999999999987764 567788777654 47666543221 11 223557888999999999999
Q ss_pred EcCccccchhhhhhc-----c--cEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH----------HH---HHHHH
Q 020093 172 VAGYAVGGGHVLHMV-----C--DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK----------KA---REMWF 231 (331)
Q Consensus 172 v~G~a~GgG~~Lal~-----c--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~----------~a---~~l~l 231 (331)
|-|.+.|||+ ++++ + |+++|.++++++. ..+-+.+..+.+.--.. .+ .++.-
T Consensus 451 I~g~~~Ggg~-~am~~~~~~~~~d~~~a~p~A~~~V-------m~pegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~~~ 522 (587)
T 1pix_A 451 TLRKGTAAAH-YVLGGPQGNDTNAFSIGTAATEIAV-------MNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQ 522 (587)
T ss_dssp ECSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEES-------SCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred EcCCCccHHH-HHhcCcccCcccceeeeccCCeEec-------CCHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHHHH
Confidence 9999998885 5555 4 9999988888775 33344444443221000 00 00100
Q ss_pred -cCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCH
Q 020093 232 -LARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSP 272 (331)
Q Consensus 232 -tG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~ 272 (331)
--+..++..|.+.|+||.|+++.++........+.+...+.
T Consensus 523 ~y~~~~~p~~aa~~g~iD~VI~p~~tR~~l~~~L~~~~~~~~ 564 (587)
T 1pix_A 523 AFYTKSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAYQNPE 564 (587)
T ss_dssp HHHHTTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHHTTSCS
T ss_pred HHHHhCCHHHHHhcCCCccccCHHHHHHHHHHHHHHHhcCCc
Confidence 01257889999999999999998887777776666665553
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.026 Score=56.15 Aligned_cols=170 Identities=17% Similarity=0.168 Sum_probs=103.3
Q ss_pred CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~-~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
++.-..|.=|+|. ..-+++.+-.....+.++.++. .++=+|.|.-.. .|..|.+-++.. . .....+
T Consensus 345 ~G~~Vgvian~~~~~~G~l~~~~a~Kaar~i~~a~~-~~iPlv~lvDt~--Gf~~G~~~E~~G---------i-~~~ga~ 411 (548)
T 2bzr_A 345 DGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDC-FNIPIVMLVDVP--GFLPGTDQEYNG---------I-IRRGAK 411 (548)
T ss_dssp TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEEC--CBCCCHHHHHTT---------H-HHHHHH
T ss_pred CCEEEEEEEECCcccCCCCCHHHHHHHHHHHHHHHh-cCCCEEEEeecc--CCCCChHHHHhh---------H-HHHHHH
Confidence 4443444445544 2347999999999998888864 456666665543 366665433211 1 112446
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhh----cccEEEEeCCceeecCCCCccCCCCchHHHHHHHh-hCH------H-
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHM----VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL-VGP------K- 224 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal----~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~-vG~------~- 224 (331)
++..+.....|+|+.|-|.|.|||+--.. .+|+++|.++++++. ..+-+.+..+.+. +-. .
T Consensus 412 ~l~a~~~~~VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~V-------mgpegaa~Il~r~~~~~~~~~g~~~ 484 (548)
T 2bzr_A 412 LLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV-------MGASGAVGFVYRQQLAEAAANGEDI 484 (548)
T ss_dssp HHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTCCC----------C
T ss_pred HHHHHhCCCCCEEEEEeCCcchHHHHHhccccCCCCEEEEcCCCEEEe-------cCHHHHHHHHhhhHHhhhhcccccH
Confidence 67788899999999999999988874432 389999999888775 3333334443332 100 0
Q ss_pred -HHH-HHHH--cCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHH
Q 020093 225 -KAR-EMWF--LARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREI 267 (331)
Q Consensus 225 -~a~-~l~l--tG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l 267 (331)
..+ ++.- .-..-++..+.+.|+||.|+++.++........+.+
T Consensus 485 ~~~~~~~~~~y~~~~~~p~~~a~~g~iD~II~p~~tR~~l~~~L~~l 531 (548)
T 2bzr_A 485 DKLRLRLQQEYEDTLVNPYVAAERGYVGAVIPPSHTRGYIGTALRLL 531 (548)
T ss_dssp HHHHHHHHHHHHHHHSBSHHHHHTTSSSEECCGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhCCHHHHHhcCCCceeeCHHHHHHHHHHHHHHH
Confidence 001 1111 011245577899999999999877666555444443
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.009 Score=61.08 Aligned_cols=81 Identities=16% Similarity=0.089 Sum_probs=56.3
Q ss_pred CCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCC--CHHHH
Q 020093 164 LPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFY--TAEEA 241 (331)
Q Consensus 164 ~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~--~a~eA 241 (331)
-..|+|++|.|.|.|||.-+...||++|+.+++.+.+. |+...+. .+|+.+ +.++.
T Consensus 245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~iflt--------------------GP~vIk~--~tGeeV~~s~eeL 302 (758)
T 3k8x_A 245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILT--------------------GAPAINK--MLGREVYTSNLQL 302 (758)
T ss_dssp TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCEESS--------------------CHHHHHH--HHTSCCCSCTHHH
T ss_pred cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceEEEe--------------------CHHHHHH--HhCCccccCchhc
Confidence 46799999999999999999999999999998754431 1211111 256655 54442
Q ss_pred ------HhcCcccEecCCCcHHHHHHHHHHHHhc
Q 020093 242 ------EKMGLVNTVVPLEKLEQETIKWSREILR 269 (331)
Q Consensus 242 ------~~~GLv~~vv~~~~l~~~a~~~a~~la~ 269 (331)
..-|+++.++++|+ ++.+.++++.+
T Consensus 303 GGA~vh~~sGvad~va~dd~---eal~~ir~lLs 333 (758)
T 3k8x_A 303 GGTQIMYNNGVSHLTAVDDL---AGVEKIVEWMS 333 (758)
T ss_dssp HSHHHHTTTTSSSEEESSHH---HHHHHHHHHHT
T ss_pred chhhHHHhcCCeeEEecCHH---HHHHHHHHHHh
Confidence 36999999998754 44445555543
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.069 Score=52.82 Aligned_cols=166 Identities=16% Similarity=0.162 Sum_probs=102.0
Q ss_pred CCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRPDR-RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~~-~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
++.-.-|.=|+|.. .-.++.+-.+...+.++.++. .++=+|.|.=.. .|-.|.+-++. .. .....+
T Consensus 336 ~G~~Vgvian~~~~~~G~l~~~~a~Kaarfi~lcd~-~~iPlv~lvDtp--Gf~~G~~~E~~---------Gi-~~~gAk 402 (531)
T 3n6r_B 336 EGRTVGVVANQPLVLAGCLDIDSSRKAARFVRFCDA-FEIPLLTLIDVP--GFLPGTSQEYG---------GV-IKHGAK 402 (531)
T ss_dssp TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEEC--SBCCSHHHHHT---------TH-HHHHHH
T ss_pred CCEEEEEEEecccccCCCCCHHHHHHHHHHHHHhhc-cCCCEEEEeCCC--CCCCCHHHHHh---------hH-HHHHHH
Confidence 45444455566542 247999999999988887765 456677765543 35555433221 11 223457
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhhc-----ccEEEEeCCceeecCCCCccCCCCchHHHHHHHh-hC---HHHHH
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMV-----CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL-VG---PKKAR 227 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal~-----cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~-vG---~~~a~ 227 (331)
++..+..+..|+|+.|-|.+.|||+ ++++ +|+++|.++++++. .++-+.+..+.+. +- ....+
T Consensus 403 ~l~a~a~a~VP~itvI~g~~~Ggg~-~am~~~~~~~d~~~awp~A~i~V-------m~pegaa~Il~r~~~~~~~~~~~~ 474 (531)
T 3n6r_B 403 LLYAYGEATVPMVTVITRKAYGGAY-VVMSSKHLRADFNYAWPTAEVAV-------MGAKGATEIIHRGDLGDPEKIAQH 474 (531)
T ss_dssp HHHHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHCCTTTTSTTHHHHH
T ss_pred HHHHHHhCCCCEEEEEcCCccchhh-hhccCccCCCCeEEEcCCceEec-------CCHHHHHHHHhcccccchhHHHHH
Confidence 8889999999999999999999887 4444 89999988887775 3233333333221 10 01111
Q ss_pred HHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHH
Q 020093 228 EMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWS 264 (331)
Q Consensus 228 ~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 264 (331)
.--+.-+.-++..|.+.|+||.|+++.+.........
T Consensus 475 ~~~y~~~~~~p~~aa~~~~vD~vIdP~~TR~~l~~~l 511 (531)
T 3n6r_B 475 TADYEERFANPFVASERGFVDEVIQPRSTRKRVARAF 511 (531)
T ss_dssp HHHHHHHHSSSHHHHHHTSSSEECCGGGHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHhcCccCcccCHHHHHHHHHHHH
Confidence 0011112245556788999999999888665544433
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.047 Score=54.04 Aligned_cols=169 Identities=17% Similarity=0.197 Sum_probs=105.1
Q ss_pred CCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRPDR-RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~~-~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
+|.-.-|.=|+|.. .-+++++......+.++.++.. ++=+|.|.=.. .|-.|.+-.. .. ......+
T Consensus 330 ~G~~Vgvian~~~~~~G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtp--Gf~~G~~~E~---------~g-i~~~~Ak 396 (530)
T 3iav_A 330 EGRPVGIVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVP--GFLPGVDQEH---------DG-IIRRGAK 396 (530)
T ss_dssp TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC--CBCCCHHHHH---------TT-HHHHHHH
T ss_pred CCEEEEEEEecCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeeCC--CCCccHHHHH---------hh-HHHHHHH
Confidence 55544455566542 2579999999999998877754 56677776544 2666654321 11 1223557
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhhc-----ccEEEEeCCceeecCCCCccCCCCchHHHHHHHh-hC------HH
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMV-----CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL-VG------PK 224 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal~-----cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~-vG------~~ 224 (331)
++..+.....|+|+.|-|.+.|||+ ++++ +|+++|.++++++. .++-+.+..+.+. +- ..
T Consensus 397 ~l~a~a~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a~~~V-------m~~egaa~il~r~~~~~~~~d~~~ 468 (530)
T 3iav_A 397 LIFAYAEATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTAQIAV-------MGAQGAVNILHRRTIADAGDDAEA 468 (530)
T ss_dssp HHHHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTSTTTSTTCTTCHH
T ss_pred HHHHHHhCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCceEec-------CCHHHHHHHHhhhhhhhcccCHHH
Confidence 8888999999999999999998776 5554 69999999888775 3333333333221 10 00
Q ss_pred HHHHHH--HcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHH
Q 020093 225 KAREMW--FLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREI 267 (331)
Q Consensus 225 ~a~~l~--ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l 267 (331)
.-.++. +.-+..++..|.+.|+||.|+++.+.........+.+
T Consensus 469 ~~~~~~~~y~~~~~~p~~aa~~~~vD~VIdP~~TR~~l~~~l~~~ 513 (530)
T 3iav_A 469 TRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQL 513 (530)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHTTSSSEECCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHH
Confidence 111111 1111246677888999999999988766554444333
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=96.06 E-value=0.13 Score=51.00 Aligned_cols=148 Identities=10% Similarity=0.043 Sum_probs=93.5
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 020093 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (331)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav 172 (331)
-.++.+-.+...+.++.++. .++=+|.|.-.. .|..|.+-.+. .. .....+++..+..+..|+|+.|
T Consensus 366 G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDtp--Gf~~G~~~E~~---------Gi-~~~gAk~~~a~~~a~vP~itvi 432 (555)
T 3u9r_B 366 GILFAEAAQKGAHFIELACQ-RGIPLLFLQNIT--GFMVGQKYEAG---------GI-AKHGAKLVTAVACARVPKFTVL 432 (555)
T ss_dssp SSBCHHHHHHHHHHHHHHHH-HTCCEEEEEEEC--CBCCSHHHHHT---------TH-HHHHHHHHHHHHHCCSCEEEEE
T ss_pred CccCHHHHHHHHHHHHHHhc-CCCCEEEEecCc--CCCCCHHHHHH---------HH-HHHHHHHHHHHHhCCCCEEEEE
Confidence 67999999999888888765 356777777655 36666443221 11 1234577888999999999999
Q ss_pred cCccccchhhhhh-----cccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCC-------------
Q 020093 173 AGYAVGGGHVLHM-----VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLAR------------- 234 (331)
Q Consensus 173 ~G~a~GgG~~Lal-----~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~------------- 234 (331)
-|.+.|||. +++ .+|++++.++++++. ..+-+.+..|... +-+++-..|+
T Consensus 433 ~g~~~Ggg~-~am~~~~~~~d~~~a~p~A~i~V-------mgpegaa~il~~~----~~~~~~~~g~~~~~~~~~~~~~~ 500 (555)
T 3u9r_B 433 IGGSFGAGN-YGMCGRAYDPRFLWMWPNARIGV-------MGGEQAAGVLAQV----KREQAERAGQQLGVEEEAKIKAP 500 (555)
T ss_dssp EEEEETTHH-HHTTCGGGCCSEEEECTTCEEES-------SCHHHHHHHHHHH----HHHHHHTTTCCCCHHHHHHHHHH
T ss_pred eCCccchhh-HhhcCccCCCCeEEEcCCcEEEc-------CCHHHHHHHHHHH----HHHHHHhccCCCCcchHHHHHHH
Confidence 999888875 333 379999988888875 2233333333211 0001111122
Q ss_pred -------CCCHHHHHhcCcccEecCCCcHHHHHHHHHH
Q 020093 235 -------FYTAEEAEKMGLVNTVVPLEKLEQETIKWSR 265 (331)
Q Consensus 235 -------~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~ 265 (331)
..++-.|-+.|+||.|+++.+.........+
T Consensus 501 ~~~~y~~~~~p~~aa~r~~vD~vIdP~~TR~~l~~~l~ 538 (555)
T 3u9r_B 501 ILEQYEHQGHPYYSSARLWDDGVIDPAQTREVLALALS 538 (555)
T ss_dssp HHHHHHHHHSHHHHHHTTSSSCBCCGGGHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHhhccccCcccChHHHHHHHHHHHH
Confidence 2355556677888888888776555444333
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.12 Score=51.68 Aligned_cols=155 Identities=10% Similarity=0.099 Sum_probs=100.1
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 020093 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (331)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav 172 (331)
-.++++-.+.-.+.++.++. -++=+|.|.-.. .|..|.+-.+- .. .....+++..+..+..|+|+.|
T Consensus 387 G~l~~~~a~Kaarfi~lcd~-f~iPlv~lvDtp--Gf~~G~~aE~~---------Gi-~~~gAk~l~a~a~a~VP~itvI 453 (588)
T 3gf3_A 387 GKLYRQGLIKMNEFVTLCAR-DRIPLIWLQDTT--GIDVGDEAEKA---------EL-LGLGQSLIYSIENSKLPSLEIT 453 (588)
T ss_dssp TEECHHHHHHHHHHHHHHHH-TTCCEEEEECCC--EECCSHHHHHT---------TH-HHHHHHHHHHHHHHCSCEEEEE
T ss_pred CCcCHHHHHHHHHHHHHhhh-cCCCeEEEecCC--CCCCCHHHHHH---------HH-HHHHHHHHHHHHhCCCCEEEEE
Confidence 46889999988888888875 367777776653 47777543321 11 1234578889999999999999
Q ss_pred cCccccchhhhhhcc-------cEEEEeCCceeecCCCCccCCCCchHHHHHHHh-h------CH------HHHHHHHH-
Q 020093 173 AGYAVGGGHVLHMVC-------DLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL-V------GP------KKAREMWF- 231 (331)
Q Consensus 173 ~G~a~GgG~~Lal~c-------D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~-v------G~------~~a~~l~l- 231 (331)
-|.+.|||. ++|++ |+++|.++++++. +++-+.+..|.+. + |. ....++.-
T Consensus 454 ~g~~~Ggg~-~am~~~~~~~~~~~~~awp~A~~sV-------m~pEgaa~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (588)
T 3gf3_A 454 IRKASAAAH-YVLGGPQGNNTNVFSIGTGACEYYV-------MPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMIQM 525 (588)
T ss_dssp SSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEES-------SCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHH
T ss_pred cCCccHHHH-HHhcccccCCccceEEECCCceEEe-------CCHHHHHHHHhhhHHhhhhccccccchHHHHHHHHHHH
Confidence 999988776 55543 3788888887765 3334444443321 1 10 00001100
Q ss_pred cCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHh
Q 020093 232 LARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREIL 268 (331)
Q Consensus 232 tG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la 268 (331)
--+..++--|.+.|+||.|+++.+.......+.+...
T Consensus 526 y~~~~~p~~aA~r~~vD~VIdP~~TR~~l~~~~~~~~ 562 (588)
T 3gf3_A 526 YTDKSRPKYCTEKGMVDEIVDMTEVRPYIQAFTEAAY 562 (588)
T ss_dssp HHHTTSHHHHHHTTSSSEECCGGGHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHhcCCCCeeeCHHHHHHHHHHHHHHHH
Confidence 0123578888999999999999987776665555443
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.02 Score=58.99 Aligned_cols=80 Identities=24% Similarity=0.230 Sum_probs=55.2
Q ss_pred CCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCC--CHH--
Q 020093 164 LPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFY--TAE-- 239 (331)
Q Consensus 164 ~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~--~a~-- 239 (331)
...|+|+.|.|.|.|||+-++..||++|+.+++.+++.. -..+-. .+|+.+ +.+
T Consensus 258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~ltG-----------p~vi~~-----------~~Ge~vy~s~e~L 315 (793)
T 2x24_A 258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIILTG-----------ATALNK-----------VLGRDVYTSNNQL 315 (793)
T ss_dssp HHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEESSC-----------HHHHHH-----------HHSSCCCSCHHHH
T ss_pred CCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEEecC-----------HHHHHH-----------hcCCcccCChhhh
Confidence 469999999999999999999999999999987766521 111111 335544 322
Q ss_pred ---H-HHhcCcccEecCCCcHHHHHHHHHHHHh
Q 020093 240 ---E-AEKMGLVNTVVPLEKLEQETIKWSREIL 268 (331)
Q Consensus 240 ---e-A~~~GLv~~vv~~~~l~~~a~~~a~~la 268 (331)
+ ....|+++.++++|. ++.+.++++.
T Consensus 316 GGa~v~~~~Gv~d~vv~dd~---ea~~~ir~~L 345 (793)
T 2x24_A 316 GGVQIMHHNGVSHVTVPDDF---EGVCTILEWL 345 (793)
T ss_dssp HSHHHHTTTTSCSEEESSHH---HHHHHHHHHH
T ss_pred ccHHHHHhcCceEEEeCCHH---HHHHHHHHHH
Confidence 2 567999999998743 3444444443
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* | Back alignment and structure |
|---|
Probab=90.89 E-value=2.3 Score=43.87 Aligned_cols=95 Identities=13% Similarity=0.144 Sum_probs=65.7
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 020093 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (331)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav 172 (331)
-.++++-.....+.++.++. .++=+|.|.-.. .|..|.+-... .. ......++..+..+..|+|+.|
T Consensus 462 G~l~~~~a~KaarfI~~cd~-f~iPlv~LvDtp--Gf~~G~~aE~~---------Gi-~~~gAkll~A~a~a~VP~itvI 528 (793)
T 2x24_A 462 QVWFPDSAYKTAQAIKDFNR-EKLPLMIFANWR--GFSGGMKDMYD---------QV-LKFGAYIVDGLRKYRQPVLIYI 528 (793)
T ss_dssp TEECHHHHHHHHHHHHHHHT-TTCCEEEECCBC--EECCSHHHHHT---------TH-HHHHHHHHHHHHTCCSCEEEEE
T ss_pred CcccHHHHHHHHHHHHHhcc-CCCCEEEEecCC--CCCCCHHHHHh---------hH-HHHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999998864 567777776553 57777543211 11 1234578889999999999999
Q ss_pred --cCccccchhhhh---hcccE--EEEeCCceeec
Q 020093 173 --AGYAVGGGHVLH---MVCDL--TIAADNAIFGQ 200 (331)
Q Consensus 173 --~G~a~GgG~~La---l~cD~--~ia~~~a~f~~ 200 (331)
.|-+.||++... +..|+ ++|.++++++.
T Consensus 529 ~r~Ge~~GGa~~~~~~~~~~d~~ev~Awp~A~~~V 563 (793)
T 2x24_A 529 PPYAEVRGGSWAVMDTSINPLCIEMYADRESRASV 563 (793)
T ss_dssp CTTCEEEHHHHHTTCGGGSTTTEEEEEETTCEEES
T ss_pred ecCCcccchhHHhhhcccCccHHHHhhhccCEEEe
Confidence 888876655332 34566 56667666654
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=81.37 E-value=5.5 Score=40.81 Aligned_cols=95 Identities=19% Similarity=0.255 Sum_probs=67.3
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 020093 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (331)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav 172 (331)
-.++++-.....+.++.++.-.++=+|.|.-.- .|..|.+-... .. ......++..+..+..|+|+.|
T Consensus 447 G~l~pe~a~KaArfI~lcd~~f~iPLv~LvDtp--Gf~~G~~aE~~---------Gi-~k~gAkll~A~a~a~VP~itVI 514 (758)
T 3k8x_A 447 QVWHPNSAFKTAQAINDFNNGEQLPMMILANWR--GFSGGQRDMFN---------EV-LKYGSFIVDALVDYKQPIIIYI 514 (758)
T ss_dssp TEECHHHHHHHHHHHHHHHHTSCCCEEECCCCC--EECCSHHHHHT---------TH-HHHHHHHHHHHHTCCSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhhhccCCCEEEEecCC--CCCCCHHHHHc---------cH-HHHHHHHHHHHHhCCCCEEEEE
Confidence 478999999999999888763566777776543 57777543221 11 1234578889999999999999
Q ss_pred c--Cccccchhhhhhc----ccE--EEEeCCceeec
Q 020093 173 A--GYAVGGGHVLHMV----CDL--TIAADNAIFGQ 200 (331)
Q Consensus 173 ~--G~a~GgG~~Lal~----cD~--~ia~~~a~f~~ 200 (331)
- |.+.||++ ++++ +|+ ++|.++|.++.
T Consensus 515 ~RkGe~~GGA~-~am~~~~~ad~~~v~Awp~A~isV 549 (758)
T 3k8x_A 515 PPTGELRGGSW-VVVDPTINADQMEMYADVNARAGV 549 (758)
T ss_dssp CTTCEEETHHH-HTTCGGGSTTTEEEEEETTCEEES
T ss_pred ecCCccchHHH-HHhCcccCCCHHHHhcCCCCEEEc
Confidence 8 99988776 5555 555 77766666654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 331 | ||||
| d1mj3a_ | 260 | c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat | 2e-55 | |
| d1q52a_ | 297 | c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter | 2e-51 | |
| d1uiya_ | 253 | c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The | 1e-40 | |
| d1dcia_ | 275 | c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2 | 4e-37 | |
| d1nzya_ | 269 | c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps | 6e-33 | |
| d1ef8a_ | 261 | c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc | 6e-32 | |
| d1hzda_ | 266 | c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T | 9e-31 | |
| d1wz8a1 | 263 | c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT | 7e-27 | |
| d2f6qa1 | 245 | c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C | 7e-27 | |
| d1pjha_ | 266 | c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2 | 1e-26 | |
| d1szoa_ | 249 | c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus | 2e-25 | |
| d1wdka4 | 310 | c.14.1.3 (A:1-310) Fatty oxidation complex alpha s | 7e-24 | |
| d2fw2a1 | 258 | c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum | 2e-22 | |
| d2a7ka1 | 230 | c.14.1.3 (A:1-230) Carbapenem biosynthes protein C | 3e-19 | |
| d1sg4a1 | 249 | c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-d | 4e-17 | |
| d1uyra1 | 333 | c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxyla | 0.002 |
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 179 bits (454), Expect = 2e-55
Identities = 81/259 (31%), Positives = 126/259 (48%), Gaps = 6/259 (2%)
Query: 68 FTDIIYEK-AVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
F II EK + I +NRP NA ++EL +A +D +VG I+LTG
Sbjct: 3 FQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEK 62
Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
+ ++ R Y L I R+ KPVIA V GYA+GGG L M+
Sbjct: 63 AFAAGADIKEMQNRTFQDCYSG----KFLSHWDHITRIKKPVIAAVNGYALGGGCELAMM 118
Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
CD+ A + A FGQ +G+ G+ ++R VG A EM +A++A++ GL
Sbjct: 119 CDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGL 178
Query: 247 VNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALN-AVDDGHAGLQTLGGDATLIFYG 305
V+ + P+E L +E I+ + +I NS + + K ++N A + L +
Sbjct: 179 VSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFA 238
Query: 306 TEEGSEGKTAFVERRRPDF 324
T++ EG +AFVE+R+ +F
Sbjct: 239 TDDRREGMSAFVEKRKANF 257
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 170 bits (430), Expect = 2e-51
Identities = 128/296 (43%), Positives = 171/296 (57%), Gaps = 19/296 (6%)
Query: 51 PSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDA 110
P WR+ + + TDI Y + V + ++ NRP+ RNAFRPHTV EL R + A
Sbjct: 2 PFDAKAWRLV--DGFDDLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHA 59
Query: 111 RDDSSVGVIILTGKGTEAFC----------------SGGDQALRTRDGYADYENFGRLNV 154
R VGV++LTG G SG A D GRL++
Sbjct: 60 RMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHI 119
Query: 155 LDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYG 213
L++Q IR +PK VI +V G+A GGGH LH+VCDLT+A+ + A F QT VGSFD GYG
Sbjct: 120 LEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYG 179
Query: 214 SSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPT 273
S+ ++R VG K ARE++FL R YTAE+ +MG VN V +LE ++W+ EI SP
Sbjct: 180 SAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQ 239
Query: 274 AIRVLKSALNAVDDGHAGLQTLGGDATLIFYGTEEGSEGKTAFVERRRPDFLKFPR 329
A R+LK A N +DDG G Q G+AT + Y T+E EG+ AF+++R PD+ FPR
Sbjct: 240 AQRMLKFAFNLLDDGLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDWSPFPR 295
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Score = 140 bits (354), Expect = 1e-40
Identities = 78/247 (31%), Positives = 119/247 (48%), Gaps = 3/247 (1%)
Query: 80 GIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQAL-R 138
+A + +N P+RRN P L++A +D D V ++LTG+G L R
Sbjct: 8 HVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLER 67
Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
+ A+ L+++ L ++ PKP +A V G AV GG L + CDL + + A
Sbjct: 68 VTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARL 127
Query: 199 GQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQ 258
G T K+G S I+ R VG K A+++ R A EA+ +GLVN + P K +
Sbjct: 128 GYTEVKIGFVA-ALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALE 186
Query: 259 ETIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATLIFYGTEEGSEGKTAFV 317
E + E+ +N+PT++R+ K L A+ G L A T + +EG AF
Sbjct: 187 EAKALAEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFF 246
Query: 318 ERRRPDF 324
E+R P F
Sbjct: 247 EKRPPRF 253
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 132 bits (331), Expect = 4e-37
Identities = 56/275 (20%), Positives = 99/275 (36%), Gaps = 15/275 (5%)
Query: 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
+ I + + + +NRP++RNA +EL+ F DS ++++G G
Sbjct: 2 YESIQVTS-AQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKM 60
Query: 128 AFCSGGDQALRTRDG---------YADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVG 178
+ + A Y I + PKPVIA + G +G
Sbjct: 61 FTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIG 120
Query: 179 GGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKARE-MWFLARFYT 237
GG L CD+ +A F VG + +++G + + F AR
Sbjct: 121 GGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMM 180
Query: 238 AEEAEKMGLVN-TVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG--HAGLQT 294
A+EA GLV+ + + + +I SP A++ K L D L
Sbjct: 181 ADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLD- 239
Query: 295 LGGDATLIFYGTEEGSEGKTAFVERRRPDFLKFPR 329
+ T++ + A +E++ + F +
Sbjct: 240 YMATWNMSMLQTQDIIKSVQAAMEKKDSKSITFSK 274
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Score = 121 bits (302), Expect = 6e-33
Identities = 67/268 (25%), Positives = 115/268 (42%), Gaps = 10/268 (3%)
Query: 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
+ I + V +G+A+ITI P RNA ++E+ A N A +D SVG +++TG
Sbjct: 2 YEAIGHR--VEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDA 59
Query: 128 AFCSGGDQALRTRDGYADYENFGRLNVLDLQ---VQIRRLPKPVIAMVAGYAVGGGHVLH 184
+ + G A + R+ L +I R+ +PV+A + G A GGG +
Sbjct: 60 FCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGIS 119
Query: 185 MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKM 244
+ D+ I AD+A F +G + S ++R+VG ++A E+ R EEA+
Sbjct: 120 LASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDW 179
Query: 245 GLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG--HAGLQTLGGDATLI 302
GLV+ V P ++ + K +RE+ + K +A + +
Sbjct: 180 GLVSRVYPKDEFREVAWKVARELAAAPTHLQVMAKERFHAGWMQPVEECTE-FEIQNVIA 238
Query: 303 FYGTEEGSEGKTAFVERRRPDF--LKFP 328
T F++ R D ++ P
Sbjct: 239 SVTHPHFMPCLTRFLDGHRADRPQVELP 266
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Score = 118 bits (295), Expect = 6e-32
Identities = 69/262 (26%), Positives = 118/262 (45%), Gaps = 9/262 (3%)
Query: 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
+ + +A I N + NA + +L++A +D +I+ G+
Sbjct: 2 SYQYVNVVTI--NKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILRAPSGS 59
Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
+ F +G D G L + I++ PKP+I+MV G GG + M
Sbjct: 60 KVFSAGHDIHELPSGGRDPLSYDDPLR--QITRMIQKFPKPIISMVEGSVWGGAFEMIMS 117
Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
DL IAA + F T +G G ++R G +E+ F A TA+ A +G+
Sbjct: 118 SDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGI 177
Query: 247 VNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH----AGLQTLGGDATLI 302
+N VV +E+LE T++ + I +P AI V+K L + + H + + G +
Sbjct: 178 LNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAV 237
Query: 303 FYGTEEGSEGKTAFVERRRPDF 324
+ +E+ EG AF+E+R+P+F
Sbjct: 238 Y-DSEDYQEGMNAFLEKRKPNF 258
|
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 115 bits (287), Expect = 9e-31
Identities = 68/251 (27%), Positives = 116/251 (46%), Gaps = 6/251 (2%)
Query: 79 EGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALR 138
GI + INR +N+ + +K L +A + + D V II+ + FC+G D R
Sbjct: 14 RGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKER 73
Query: 139 TRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF 198
+ ++ F + + I LP P IA + G A+GGG L + CD+ +AA +A
Sbjct: 74 AKMSSSEVGPFVS-KIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKM 132
Query: 199 GQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQ 258
G K+ G G+ + R +G A+E+ F AR +EA+ +GL++ V+ +
Sbjct: 133 GLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGD 192
Query: 259 ETIKWSREILR----NSPTAIRVLKSALN-AVDDGHAGLQTLGGDATLIFYGTEEGSEGK 313
+ + ++ R P A+RV K A+N ++ + T++ EG
Sbjct: 193 AAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGL 252
Query: 314 TAFVERRRPDF 324
AF E+R P +
Sbjct: 253 LAFKEKRPPRY 263
|
| >d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Probable enoyl-CoA hydratase TTHA0218 species: Thermus thermophilus [TaxId: 274]
Score = 104 bits (259), Expect = 7e-27
Identities = 60/258 (23%), Positives = 101/258 (39%), Gaps = 2/258 (0%)
Query: 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
+ + + G+ +IT R ++ NA P + L R + D V ++L G+G
Sbjct: 7 RYPGLAFAW-PRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGG 64
Query: 127 EAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMV 186
G + + DL + P+PV+A V AVG G L +
Sbjct: 65 VFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALA 124
Query: 187 CDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGL 246
D+ + ++G + + LVG KA+ L T EEAE++GL
Sbjct: 125 ADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGL 184
Query: 247 VNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFYGT 306
V V EK+ ++ ++ + + + A+ K ALN L + +
Sbjct: 185 VALAVEDEKVYEKALEVAERLAQGPKEALHHTKHALNHWYRSFLPHFELSLALEFLGFSG 244
Query: 307 EEGSEGKTAFVERRRPDF 324
+E EG A E+R P+F
Sbjct: 245 KELEEGLKALKEKRPPEF 262
|
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Score = 104 bits (258), Expect = 7e-27
Identities = 59/222 (26%), Positives = 91/222 (40%), Gaps = 5/222 (2%)
Query: 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTE 127
F ++ +GI KI NRP ++NA E++RA A D S+ + +LTG G
Sbjct: 2 FETLVVTSE--DGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDY 58
Query: 128 AFCSG--GDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
+ G + + + + PKP+IA+V G AVG L
Sbjct: 59 YSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLG 118
Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMG 245
+ D A+D A F +G G S +++ P KA EM + TA EA G
Sbjct: 119 LFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQG 178
Query: 246 LVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD 287
LV V P ++E + + P A+R+ K + +
Sbjct: 179 LVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKRER 220
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 103 bits (258), Expect = 1e-26
Identities = 30/270 (11%), Positives = 70/270 (25%), Gaps = 29/270 (10%)
Query: 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT 126
+ I Y I + PD NA L A + V I+ G
Sbjct: 3 QNEKISYRIE--GPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGR 60
Query: 127 EAFCSGGDQALRTRDGYADYENFGRL---------NVLDLQVQIRRLPKPVIAMVAGYAV 177
+ + G + + + + K +I + G A+
Sbjct: 61 FFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAI 120
Query: 178 GGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWF-LARFY 236
G L +CD+ + ++ ++ G+++ L + +
Sbjct: 121 GLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPF 180
Query: 237 TAEEAEKMGLVNTVVPLEKLEQETI------KWSREILRNSPTAIRVLKSALNAVDDGHA 290
+ + G ++ + E + ++ + +K L +
Sbjct: 181 KYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKS------ 234
Query: 291 GLQTLGGDATLIFYGTEEGSEGKTAFVERR 320
+ E +E +V+
Sbjct: 235 -----NHIDAFNKANSVEVNESLKYWVDGE 259
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Score = 100 bits (248), Expect = 2e-25
Identities = 41/223 (18%), Positives = 70/223 (31%), Gaps = 4/223 (1%)
Query: 62 DESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIIL 121
E ++ +I E+ G+ +T++ + + EL F+D D V+IL
Sbjct: 6 QEYSQKYENIRLERD--GGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVIL 63
Query: 122 TGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGH 181
TG G + G + L + + PVIA V G
Sbjct: 64 TGTGPSFCNEIDFTS--FNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTNAPE 121
Query: 182 VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEA 241
+ M + A G + ++G + R + A A
Sbjct: 122 IPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTA 181
Query: 242 EKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNA 284
G VN V+ ++L + +R I A R + L
Sbjct: 182 LDYGAVNEVLSEQELLPRAWELARGIAEKPLLARRYARKVLTR 224
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Score = 97.5 bits (241), Expect = 7e-24
Identities = 45/215 (20%), Positives = 83/215 (38%), Gaps = 2/215 (0%)
Query: 77 VGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQ 135
+ GI ++ + + + N F T+ EL +A + + D+SV +I++
Sbjct: 13 LESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADIT 72
Query: 136 A-LRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD 194
+ G L + L P +A + G A+GGG + + D + AD
Sbjct: 73 EFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMAD 132
Query: 195 NAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLE 254
+A G K+G + G+ + RL+G A E + AE+A K+ V+ VV +
Sbjct: 133 SAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTAD 192
Query: 255 KLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH 289
KL + + + + L +
Sbjct: 193 KLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNA 227
|
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.3 bits (227), Expect = 2e-22
Identities = 57/261 (21%), Positives = 99/261 (37%), Gaps = 7/261 (2%)
Query: 68 FTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDA-RDDSSVGVIILTGKG 125
+ DI+ +K +G +I ++ R +NA +KE++ A N A DDS + + G
Sbjct: 1 YRDIVVKKE--DGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVLFSAAGSV 58
Query: 126 TEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHM 185
G R+ + + + KP++ V G A+G G +
Sbjct: 59 FCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILP 118
Query: 186 VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMG 245
+CDL A + A F G G S +++G A EM R TA EA G
Sbjct: 119 LCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKG 178
Query: 246 LVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG--HAGLQTLGGDATLIF 303
LV+ V QE + +E+ + + K+ + + +
Sbjct: 179 LVSQVFLTGTFTQEVMIQIKELASYNAIVLEECKALVRCNIKLELEQANE-RECEVLRKI 237
Query: 304 YGTEEGSEGKTAFVERRRPDF 324
+ + +G E +VE + +F
Sbjct: 238 WSSAQGIESMLKYVENKIDEF 258
|
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Score = 83.0 bits (203), Expect = 3e-19
Identities = 36/214 (16%), Positives = 69/214 (32%), Gaps = 2/214 (0%)
Query: 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
+++E+ + + IT++ P++ N F + A A D SV +++ G +F
Sbjct: 1 MVFEE-NSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFS 59
Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
+GGD + ++ V+D Q G +
Sbjct: 60 AGGDFNEVKQLSRSEDIEEWIDRVID-LYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQ 118
Query: 191 IAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTV 250
+ G++I+ G +E+ + + A LVN V
Sbjct: 119 RLMASTANFVMPELKHGIGCSVGAAILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQV 178
Query: 251 VPLEKLEQETIKWSREILRNSPTAIRVLKSALNA 284
V L I + + +A K A+N
Sbjct: 179 VESSALLDAAITQAHVMASYPASAFINTKRAVNK 212
|
| >d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Score = 77.2 bits (188), Expect = 4e-17
Identities = 38/246 (15%), Positives = 82/246 (33%), Gaps = 7/246 (2%)
Query: 71 IIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFC 130
++ E G G+A + P N+ + EL+ + +D S +ILT
Sbjct: 4 VLVEPDAGAGVAVMKFKNPPV-NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPG-VF 61
Query: 131 SGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLT 190
S G + V +L +++ + +++ + G GG ++ + CD
Sbjct: 62 SAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYR 121
Query: 191 IAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFL--ARFYTAEEAEKMGLVN 248
I ADN + + + L + EA ++G+V+
Sbjct: 122 ILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVD 181
Query: 249 TVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG--HAGLQTLGGDATLIFYGT 306
VVP E+++ + + + A ++ K+ + + F
Sbjct: 182 QVVPEEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATASRLVTQRD-ADVQNFVSFISK 240
Query: 307 EEGSEG 312
+ +
Sbjct: 241 DSIQKS 246
|
| >d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 333 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.9 bits (85), Expect = 0.002
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 167 PVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV 205
I +V +VG G L + I + TG
Sbjct: 242 FTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTGAPA 280
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 331 | |||
| d1mj3a_ | 260 | Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve | 100.0 | |
| d1q52a_ | 297 | Naphthoate synthase MenB {Mycobacterium tuberculos | 100.0 | |
| d1wz8a1 | 263 | Probable enoyl-CoA hydratase TTHA0218 {Thermus the | 100.0 | |
| d1ef8a_ | 261 | Methylmalonyl CoA decarboxylase {Escherichia coli | 100.0 | |
| d2fw2a1 | 258 | Chromodomain protein CDY2A {Human (Homo sapiens) [ | 100.0 | |
| d1nzya_ | 269 | 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., | 100.0 | |
| d1hzda_ | 266 | AUH protein {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1dcia_ | 275 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d1uiya_ | 253 | Enoyl-CoA hydratase (crotonase) {Thermus thermophi | 100.0 | |
| d2f6qa1 | 245 | Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human ( | 100.0 | |
| d1sg4a1 | 249 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d1wdka4 | 310 | Fatty oxidation complex alpha subunit, N-terminal | 100.0 | |
| d2a7ka1 | 230 | Carbapenem biosynthes protein CarB {Pectobacterium | 100.0 | |
| d1pjha_ | 266 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d1szoa_ | 249 | 6-oxo camphor hydrolase {Rhodococcus erythropolis | 100.0 | |
| d2cbya1 | 179 | Clp protease, ClpP subunit {Mycobacterium tubercul | 98.31 | |
| d1yg6a1 | 183 | Clp protease, ClpP subunit {Escherichia coli [TaxI | 98.29 | |
| d1y7oa1 | 192 | Clp protease, ClpP subunit {Streptococcus pneumoni | 98.17 | |
| d1tg6a1 | 193 | Clp protease, ClpP subunit {Human (Homo sapiens), | 98.0 | |
| d2f6ia1 | 190 | Clp protease, ClpP subunit {Plasmodium falciparum | 97.97 | |
| d1on3a1 | 253 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 97.77 | |
| d2f9yb1 | 263 | Acetyl-coenzyme A carboxylase carboxyl transferase | 97.69 | |
| d1xnya1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.61 | |
| d2a7sa1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.57 | |
| d1vrga1 | 251 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.55 | |
| d1pixa2 | 287 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 97.38 | |
| d2f9ya1 | 316 | Acetyl-coenzyme A carboxylase carboxyl transferase | 97.14 | |
| d2a7sa2 | 271 | Propionyl-CoA carboxylase complex B subunit, PccB | 96.96 | |
| d1vrga2 | 264 | Propionyl-CoA carboxylase complex B subunit, PccB | 96.79 | |
| d1xnya2 | 263 | Propionyl-CoA carboxylase complex B subunit, PccB | 96.74 | |
| d1on3a2 | 264 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 96.43 | |
| d1uyra1 | 333 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 96.13 | |
| d1pixa3 | 299 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 95.03 | |
| d1uyra2 | 404 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 88.99 |
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=5.8e-61 Score=438.00 Aligned_cols=257 Identities=32% Similarity=0.485 Sum_probs=230.9
Q ss_pred CcccEEEEEee-CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcc
Q 020093 67 EFTDIIYEKAV-GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 67 ~~~~v~~~~~~-~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~ 145 (331)
+|+.|++++.. +++|++||||||+++|+||.+|+.+|.++|++++.|+++++|||+|.| ++||+|+|++++.....
T Consensus 2 ~~~~i~~e~~g~~~~I~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~-- 78 (260)
T d1mj3a_ 2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGE-KAFAAGADIKEMQNRTF-- 78 (260)
T ss_dssp CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCS-SEEECCBCHHHHTTCCH--
T ss_pred CCeEEEEEEEcCCCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccc-ccccccchhhhhhccch--
Confidence 68899999821 258999999999999999999999999999999999999999999998 69999999998754221
Q ss_pred hhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHH
Q 020093 146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (331)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 225 (331)
.......+..++..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.++
T Consensus 79 -~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~~ 157 (260)
T d1mj3a_ 79 -QDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSL 157 (260)
T ss_dssp -HHHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHH
T ss_pred -hhhhHHHHHHHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCHHH
Confidence 1111122345667889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHh
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFY 304 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~ 304 (331)
|++++++|++++++||+++|||++|++.+++.+.+.+++++++..+|.+++.+|++++..... .......|...+..++
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~l~~~l~~E~~~~~~~~ 237 (260)
T d1mj3a_ 158 AMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTF 237 (260)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHcCcccCchhhccCCCceeeecccccccccccccccccchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999998764 3445567777888899
Q ss_pred CChhHHHHHHHHhcCCCCCCCCC
Q 020093 305 GTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 305 ~s~d~~egi~aflekr~p~f~~~ 327 (331)
.++|++||+++|+|||+|+|++.
T Consensus 238 ~s~d~~egi~aFleKR~P~f~~~ 260 (260)
T d1mj3a_ 238 ATDDRREGMSAFVEKRKANFKDH 260 (260)
T ss_dssp GSHHHHHHHHHHHTTSCCCCCCC
T ss_pred CCHHHHHHHHHHhCCCCCCCCCC
Confidence 99999999999999999999873
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=3e-60 Score=441.94 Aligned_cols=277 Identities=49% Similarity=0.837 Sum_probs=234.0
Q ss_pred CCccchhhhcccCCCCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCC----
Q 020093 51 PSHDVVWRIACDESGTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGT---- 126 (331)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~---- 126 (331)
|-.+..|..... ..++++|.|++++++||++||||||+++|+||.+|+.+|.++|++++.|+++++|||+|.|+
T Consensus 2 ~~~~~~~~~~~~--~~~~~~i~~~~~~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~ 79 (297)
T d1q52a_ 2 PFDAKAWRLVDG--FDDLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKD 79 (297)
T ss_dssp CCCGGGEEECTT--CTTCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTT
T ss_pred CCCHHHCcccCC--cCCCcceEEEEEccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccc
Confidence 345667886555 77889999998667999999999999999999999999999999999999999999999842
Q ss_pred --CceeccccccchhcCCCcch-----h-----hhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeC
Q 020093 127 --EAFCSGGDQALRTRDGYADY-----E-----NFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD 194 (331)
Q Consensus 127 --~~FcaG~Dl~~~~~~~~~~~-----~-----~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~ 194 (331)
+.||+|.|++.......... . ......+..++..|..+||||||+|||+|+|||++|+++||+||+++
T Consensus 80 gG~~f~ag~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~ 159 (297)
T d1q52a_ 80 GGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASR 159 (297)
T ss_dssp CCCEEECCC-----------------------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEET
T ss_pred hhhhhhhcchhhhhcccccccccccccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhcccccc
Confidence 47888888876532211100 0 00112356788899999999999999999999999999999999986
Q ss_pred C-ceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHH
Q 020093 195 N-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPT 273 (331)
Q Consensus 195 ~-a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~ 273 (331)
+ ++|++||+++|++|+++++++|+|++|.++|++++++|+.++|+||+++||||+|+|++++++++.++++++++.||.
T Consensus 160 ~~~~f~~pe~~~Gl~p~~~~~~~L~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~el~~~~~~~a~~l~~~~~~ 239 (297)
T d1q52a_ 160 EYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQ 239 (297)
T ss_dssp TTCEEECCGGGGTCCCCSTTTHHHHHHHCHHHHHHHHHHCCEECHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHH
T ss_pred ccccceeeeeccccccccccccccccccCccceeeccccccccchHhhhhhccccccCchHHhhHHHHHHhhhhccCCHH
Confidence 5 579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccccCchhHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCCCCCCC
Q 020093 274 AIRVLKSALNAVDDGHAGLQTLGGDATLIFYGTEEGSEGKTAFVERRRPDFLKFPR 329 (331)
Q Consensus 274 a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~s~d~~egi~aflekr~p~f~~~~~ 329 (331)
+++.+|++++...+........+.+.+..++.++|++||++||+|||+|+|++.|+
T Consensus 240 a~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~Egv~AF~eKR~P~f~~~~~ 295 (297)
T d1q52a_ 240 AQRMLKFAFNLLDDGLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDWSPFPR 295 (297)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCTTSCC
T ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCCCCCC
Confidence 99999999998665444444455666777889999999999999999999999886
|
| >d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Probable enoyl-CoA hydratase TTHA0218 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5.5e-60 Score=433.04 Aligned_cols=254 Identities=25% Similarity=0.353 Sum_probs=227.7
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
.|+.|.++.. ++||++||| ||+++|+||.+|+.+|.+++++++.|++||+|||+|+| ++||+|+||+++...... .
T Consensus 7 ~~~~i~~~~~-~~gV~~itl-rp~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g-~~FsaG~Dl~~~~~~~~~-~ 82 (263)
T d1wz8a1 7 RYPGLAFAWP-RPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEG-GVFSAGGSFGLIEEMRAS-H 82 (263)
T ss_dssp HCTTEEEEEE-ETTEEEEEE-CCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGG-GCCBCCBCHHHHHHHHHC-H
T ss_pred CCCeEEEEEc-CCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHhhCCCCeEEEEeccc-ccccccchhhhhhhhccc-c
Confidence 4677888874 678999999 89999999999999999999999999999999999999 699999999987532111 1
Q ss_pred hhhh--hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 147 ENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 147 ~~~~--~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
+... .....+++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++++++|.+
T Consensus 83 ~~~~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~ 162 (263)
T d1wz8a1 83 EALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMA 162 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHH
T ss_pred cccccchhhhhHHHHHhhhhhcceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1111 22356788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCchhHHHHHHHHHHHHh
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGHAGLQTLGGDATLIFY 304 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~ 304 (331)
+|++|+++|++++|+||++|||||+|||+++|.+++.++|++|++.||.+++.+|+++++..+......+.+.......+
T Consensus 163 ~a~~l~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~al~~~K~~l~~~~~~~~~~~~~e~~~~~~~~ 242 (263)
T d1wz8a1 163 KAKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEALHHTKHALNHWYRSFLPHFELSLALEFLGF 242 (263)
T ss_dssp HHHHHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHGG
T ss_pred hhhhhcccccccchhHHHhcCCcccccchhhhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999876544444455666677788
Q ss_pred CChhHHHHHHHHhcCCCCCC
Q 020093 305 GTEEGSEGKTAFVERRRPDF 324 (331)
Q Consensus 305 ~s~d~~egi~aflekr~p~f 324 (331)
.++|++||++||+|||+|+|
T Consensus 243 ~s~d~~Egi~Af~eKR~P~f 262 (263)
T d1wz8a1 243 SGKELEEGLKALKEKRPPEF 262 (263)
T ss_dssp GSHHHHHHHHHHHTTSCCCC
T ss_pred cCHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.8e-60 Score=431.53 Aligned_cols=256 Identities=27% Similarity=0.389 Sum_probs=224.6
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeC-CCCceeccccccchhcCCCcc
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGK-GTEAFCSGGDQALRTRDGYAD 145 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~-g~~~FcaG~Dl~~~~~~~~~~ 145 (331)
.|++|.+++ +++|++||||||+++|+||.+|+.+|.++|+++++ +++++|||+|. |+++||+|+||+++.......
T Consensus 2 ~~~~i~~~~--~~~v~~Itlnrp~~~Nal~~~~~~~l~~al~~~~~-~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~ 78 (261)
T d1ef8a_ 2 SYQYVNVVT--INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNR-PEIRCIILRAPSGSKVFSAGHDIHELPSGGRDP 78 (261)
T ss_dssp CCSSEEEEE--ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCS-TTCCEEEEECCTTCSEEECCSCSTTC-----CT
T ss_pred CCCEEEEEE--ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeccccchhhcccccccccccCCccc
Confidence 468899999 99999999999999999999999999999999984 57999999985 457999999999876432211
Q ss_pred hhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHH
Q 020093 146 YENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKK 225 (331)
Q Consensus 146 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 225 (331)
. . ....+++++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|+|++|.++
T Consensus 79 ~-~-~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~~ 156 (261)
T d1ef8a_ 79 L-S-YDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHI 156 (261)
T ss_dssp T-C-TTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHH
T ss_pred c-c-cccchhhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCccc
Confidence 1 1 1223568899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccCc-hh--HHHHHHHHHHH
Q 020093 226 AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDGH-AG--LQTLGGDATLI 302 (331)
Q Consensus 226 a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~-~~--~~~~~~~~~~~ 302 (331)
+++++++|+.|+|+||+++||||+|++++++.+++.++|++|+..+|.+++.+|+.++...+.. .. ..+.+......
T Consensus 157 a~~~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~ 236 (261)
T d1ef8a_ 157 VKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRA 236 (261)
T ss_dssp HHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_pred cccccccCceEcHHHHHHcCCcceeeechhhhhhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998765422 12 22333344566
Q ss_pred HhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 303 FYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 303 ~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
++.++|++||++||+|||+|+|+|.
T Consensus 237 ~~~s~D~~Egi~AfleKR~P~f~G~ 261 (261)
T d1ef8a_ 237 VYDSEDYQEGMNAFLEKRKPNFVGH 261 (261)
T ss_dssp HHTSHHHHHHHHHHHTTSCCCCCCC
T ss_pred HhCCHHHHHHHHHHhCCCCCcCCCC
Confidence 7899999999999999999999984
|
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-59 Score=427.15 Aligned_cols=253 Identities=23% Similarity=0.354 Sum_probs=226.6
Q ss_pred cccEEEEEeeCCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 68 FTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLn-rp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
|++|.+++ +++|++|||| ||+++|+||.+|+.+|.++|+.++.| ++++|||+|.| ++||+|+|++++........
T Consensus 1 y~~i~v~~--~~gi~~i~l~~rp~~~Nals~~~~~el~~al~~~~~d-~~~~vvl~g~g-~~FsaG~Dl~~~~~~~~~~~ 76 (258)
T d2fw2a1 1 YRDIVVKK--EDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAAD-DSKLVLFSAAG-SVFCCGLDFGYFVRHLRNDR 76 (258)
T ss_dssp CCSEEEEE--ETTEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHS-SCSEEEEEECS-SCSBCCBCHHHHHHHHHHCH
T ss_pred CceEEEEE--ECCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCc-cccccccccchhhhcccccc
Confidence 67899999 9999999997 79999999999999999999999987 56999999999 69999999998743211111
Q ss_pred h--h-hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCH
Q 020093 147 E--N-FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP 223 (331)
Q Consensus 147 ~--~-~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 223 (331)
. . .....+++++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|.
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~ 156 (258)
T d2fw2a1 77 NTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGK 156 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCH
T ss_pred cchhhHHHHHHHHHHHhhhccceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhhcCc
Confidence 0 1 112235678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHH
Q 020093 224 KKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLI 302 (331)
Q Consensus 224 ~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~ 302 (331)
+++++|+++|+.++|+||+++||||+|||++++.+++.+++++|++.||.+++.+|+.++...+. ..+..+.|...+..
T Consensus 157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~ 236 (258)
T d2fw2a1 157 ASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRK 236 (258)
T ss_dssp HHHHHHHTTCCEEEHHHHHHTTSCSEEECSTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhccCcccccccccccccccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999976542 23445667778888
Q ss_pred HhCChhHHHHHHHHhcCCCCCC
Q 020093 303 FYGTEEGSEGKTAFVERRRPDF 324 (331)
Q Consensus 303 ~~~s~d~~egi~aflekr~p~f 324 (331)
++.++|++||+++|+|||+|+|
T Consensus 237 ~~~s~d~~Egi~af~EKR~p~f 258 (258)
T d2fw2a1 237 IWSSAQGIESMLKYVENKIDEF 258 (258)
T ss_dssp HHTSHHHHHHHHHHHHSSCCCC
T ss_pred HhCCHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999998
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Probab=100.00 E-value=1.6e-58 Score=424.47 Aligned_cols=258 Identities=26% Similarity=0.333 Sum_probs=232.2
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
+|++|.+++ +++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.| +.||+|+|++++........
T Consensus 1 my~~i~~~i--~dgVa~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g-~~F~aG~Dl~~~~~~~~~~~ 77 (269)
T d1nzya_ 1 MYEAIGHRV--EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAE-DAFCAGFYLREIPLDKGVAG 77 (269)
T ss_dssp CCSSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEST-TCSBCCBCGGGSCSSSHHHH
T ss_pred CCCceEEEE--ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCc-ccccchhhHHHHhhcccccc
Confidence 478899999 999999999999999999999999999999999999999999999999 69999999998753221111
Q ss_pred --hhh--hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhC
Q 020093 147 --ENF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVG 222 (331)
Q Consensus 147 --~~~--~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG 222 (331)
... ....++.++.+|.++||||||+|||+|+|||++|+++|||||++++++|++||.++|++|++|+++++++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig 157 (269)
T d1nzya_ 78 VRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVG 157 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccC
Confidence 111 1123457888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHH
Q 020093 223 PKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATL 301 (331)
Q Consensus 223 ~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~ 301 (331)
..+|++++++|+.++|+||+++||||+|++++++.+++.++|++|++.||.+++.+|+.++..... ..+..+.+...+.
T Consensus 158 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~ 237 (269)
T d1nzya_ 158 MRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEIQNVI 237 (269)
T ss_dssp HHHHHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred hhhhhhccccccccchhHHHHcCCccccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987653 3445566777788
Q ss_pred HHhCChhHHHHHHHHhcCCCCCCCCC
Q 020093 302 IFYGTEEGSEGKTAFVERRRPDFLKF 327 (331)
Q Consensus 302 ~~~~s~d~~egi~aflekr~p~f~~~ 327 (331)
..+.++|++|||++|+|||+|+|.+.
T Consensus 238 ~~~~~~~~~e~v~aflekrkp~~~~~ 263 (269)
T d1nzya_ 238 ASVTHPHFMPCLTRFLDGHRADRPQV 263 (269)
T ss_dssp HHHHSTTHHHHHHHHHTTCCTTCCSS
T ss_pred HHhcCHHHHHHHHHHHCCCCCCcCCC
Confidence 88999999999999999999999653
|
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.8e-59 Score=425.99 Aligned_cols=249 Identities=28% Similarity=0.412 Sum_probs=221.1
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHH
Q 020093 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (331)
Q Consensus 78 ~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (331)
++||++||||||+++|+||.+|+.+|.++++.++.|++|++|||||.|+++||+|.|++.+....... .......++.+
T Consensus 13 ~~gI~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~~-~~~~~~~~~~~ 91 (266)
T d1hzda_ 13 NRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSE-VGPFVSKIRAV 91 (266)
T ss_dssp GTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHH-HHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccchh-hhhhhhHHHHH
Confidence 56799999999999999999999999999999999999999999999977999999999876432211 11122345678
Q ss_pred HHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCC
Q 020093 158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT 237 (331)
Q Consensus 158 ~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~ 237 (331)
+..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|.++|++++++|+.++
T Consensus 92 ~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~ 171 (266)
T d1hzda_ 92 INDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLD 171 (266)
T ss_dssp HHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTCEEE
T ss_pred HHHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHHHHHhhhccCCccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcccEecCCCcH----HHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHHhCChhHHHH
Q 020093 238 AEEAEKMGLVNTVVPLEKL----EQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIFYGTEEGSEG 312 (331)
Q Consensus 238 a~eA~~~GLv~~vv~~~~l----~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~eg 312 (331)
|+||+++||||+|||++++ .+.+.+++++++..||.+++.+|+++++.... .......+...+..++.++|++||
T Consensus 172 a~eA~~~Glv~~vv~~~~l~~~~~~~a~~~a~~i~~~~p~a~~~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg 251 (266)
T d1hzda_ 172 GKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEG 251 (266)
T ss_dssp HHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHH
T ss_pred HHHhhcccccccccChhhhhhHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999998775 45566667888889999999999999987653 344455666777788999999999
Q ss_pred HHHHhcCCCCCCCCC
Q 020093 313 KTAFVERRRPDFLKF 327 (331)
Q Consensus 313 i~aflekr~p~f~~~ 327 (331)
++||+|||+|+|+|.
T Consensus 252 ~~AF~eKR~P~f~Gk 266 (266)
T d1hzda_ 252 LLAFKEKRPPRYKGE 266 (266)
T ss_dssp HHHHTTTSCCCCCCC
T ss_pred HHHHhCCCCCCCCCC
Confidence 999999999999984
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=7.7e-58 Score=420.82 Aligned_cols=261 Identities=24% Similarity=0.331 Sum_probs=227.7
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc---
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA--- 144 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~--- 144 (331)
|+++.++.. +++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.| ++||+|+|+.++......
T Consensus 2 y~~l~~~~~-~~~I~~itlnrP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~-~~F~aG~dl~~~~~~~~~~~~ 79 (275)
T d1dcia_ 2 YESIQVTSA-QKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAG-KMFTSGIDLMDMASDILQPPG 79 (275)
T ss_dssp CSSEEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEEST-TCSBCCBCHHHHHHHHTSCCC
T ss_pred CceEEEEEc-cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccc-cccccCccHHHhhhccccccc
Confidence 678888653 788999999999999999999999999999999999999999999998 699999999876432111
Q ss_pred -chhhh------hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHH
Q 020093 145 -DYENF------GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIM 217 (331)
Q Consensus 145 -~~~~~------~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L 217 (331)
..... ....+..++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~ 159 (275)
T d1dcia_ 80 DDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRL 159 (275)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHG
T ss_pred ccccchhhhhccchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhccccccccccccccc
Confidence 00000 01123567788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCHH-HHHHHHHcCCCCCHHHHHhcCcccEecCCCc-HHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHH
Q 020093 218 SRLVGPK-KAREMWFLARFYTAEEAEKMGLVNTVVPLEK-LEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQT 294 (331)
Q Consensus 218 ~r~vG~~-~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~-l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~ 294 (331)
++++|.. .+++++++|+.++++||+++||||+|+|+++ +.+.+.+++++|++.+|.+++.+|+.+++..+. ..+..+
T Consensus 160 ~~~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~~~l~~~~~~~a~~i~~~~p~a~~~~K~~l~~~~~~~l~~~~~ 239 (275)
T d1dcia_ 160 PKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLD 239 (275)
T ss_dssp GGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccccccccccccccccccccchhhhccCCCceeeeehhhhhhhcccccccccccccHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 9999954 5678999999999999999999999999765 678889999999999999999999999887653 344556
Q ss_pred HHHHHHHHHhCChhHHHHHHHHhcCCCCCCCCCCCC
Q 020093 295 LGGDATLIFYGTEEGSEGKTAFVERRRPDFLKFPRR 330 (331)
Q Consensus 295 ~~~~~~~~~~~s~d~~egi~aflekr~p~f~~~~~~ 330 (331)
.+...+..++.++|++||++||+|||+|+|..++++
T Consensus 240 ~e~~~~~~~~~~~d~~Egi~AfleKR~pk~~~~~~~ 275 (275)
T d1dcia_ 240 YMATWNMSMLQTQDIIKSVQAAMEKKDSKSITFSKL 275 (275)
T ss_dssp HHHHHHHHHTSSHHHHHHHHHHHTTCCGGGCCCCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 777788889999999999999999999999998764
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.6e-57 Score=413.56 Aligned_cols=245 Identities=33% Similarity=0.509 Sum_probs=219.4
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhh--hhhhHH
Q 020093 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENF--GRLNVL 155 (331)
Q Consensus 78 ~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~--~~~~~~ 155 (331)
+|+|++||||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| +.||+|+|++.+........... .....+
T Consensus 6 ~G~va~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g-~~f~aG~dl~~~~~~~~~~~~~~~~~~~~~~ 84 (253)
T d1uiya_ 6 KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRG-KAFSAGADLAFLERVTELGAEENYRHSLSLM 84 (253)
T ss_dssp CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SCSBCCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred eCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccc-ccccccchhHHhhhccccCcccccchhhhhh
Confidence 467999999999999999999999999999999999999999999999 59999999987654322222111 122356
Q ss_pred HHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCC
Q 020093 156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF 235 (331)
Q Consensus 156 ~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~ 235 (331)
.++..|.++||||||+|||+|+|||++|+++|||||++++++|++||.++|++| ++++++|++++|.++|++|+++|++
T Consensus 85 ~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~-~~~~~~l~~~~g~~~a~~l~l~g~~ 163 (253)
T d1uiya_ 85 RLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVA-ALVSVILVRAVGEKAAKDLLLTGRL 163 (253)
T ss_dssp HHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCC-HHHHHHHHHHSCHHHHHHHHHHCCE
T ss_pred hhhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhccccccc-ccchhhhhcccCHHHHHHHhhcCcC
Confidence 788899999999999999999999999999999999999999999999999777 5678999999999999999999999
Q ss_pred CCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHHHHHHhCChhHHHHHH
Q 020093 236 YTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATLIFYGTEEGSEGKT 314 (331)
Q Consensus 236 ~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~s~d~~egi~ 314 (331)
++++||+++||||+|++.+++.+.+.++++++++.++.+++.+|+.++.... ...+....+...+..++.++|++||++
T Consensus 164 ~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~ 243 (253)
T d1uiya_ 164 VEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIR 243 (253)
T ss_dssp EEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHH
T ss_pred CCHHHHHHhCCCcccccccccchhHHHHHHhhcccchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998764 334455667777888899999999999
Q ss_pred HHhcCCCCCC
Q 020093 315 AFVERRRPDF 324 (331)
Q Consensus 315 aflekr~p~f 324 (331)
||+|||+|+|
T Consensus 244 af~eKR~P~f 253 (253)
T d1uiya_ 244 AFFEKRPPRF 253 (253)
T ss_dssp HHHTTSCCCC
T ss_pred HHhCCCCCCC
Confidence 9999999998
|
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-53 Score=385.98 Aligned_cols=239 Identities=27% Similarity=0.382 Sum_probs=209.7
Q ss_pred cccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchh
Q 020093 68 FTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYE 147 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 147 (331)
|++|.+++ +++|++||||||+++|+||.+|+.+|.+++++++.|+.+ +||++|.| ++||+|+|++++.........
T Consensus 2 ~~~i~~~~--~~gi~~Itlnrp~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 77 (245)
T d2f6qa1 2 FETLVVTS--EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNG-DYYSSGNDLTNFTDIPPGGVE 77 (245)
T ss_dssp CSSEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEEST-TCSBCCBCC----CCCTTHHH
T ss_pred cceEEEEE--ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCce-EEeecCCC-ccccCCccchhhhcccccccc
Confidence 78899999 899999999999999999999999999999999999887 89999998 699999999988643322111
Q ss_pred hhh---hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 148 NFG---RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 148 ~~~---~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
... ...+.+++..|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|++++|++++|..
T Consensus 78 ~~~~~~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~ 157 (245)
T d2f6qa1 78 EKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPA 157 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHH
T ss_pred cccchhhhHHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccc
Confidence 111 11245788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccccC-chhHHHHHHHHHHHH
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDDG-HAGLQTLGGDATLIF 303 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~~~~~~~~ 303 (331)
+|++++++|+.++|+||+++||||+|+|+++|++++.++|++|++.||.+++.+|+.+++.... .......|...+..+
T Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~ 237 (245)
T d2f6qa1 158 KATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGR 237 (245)
T ss_dssp HHHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999976542 334445666778888
Q ss_pred hCChhHH
Q 020093 304 YGTEEGS 310 (331)
Q Consensus 304 ~~s~d~~ 310 (331)
+.++|++
T Consensus 238 ~~s~d~~ 244 (245)
T d2f6qa1 238 WLSDECT 244 (245)
T ss_dssp HTSHHHH
T ss_pred hcCcccC
Confidence 9999875
|
| >d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=100.00 E-value=1.6e-52 Score=380.42 Aligned_cols=244 Identities=18% Similarity=0.272 Sum_probs=212.4
Q ss_pred ccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhh
Q 020093 69 TDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYEN 148 (331)
Q Consensus 69 ~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 148 (331)
++|+++.+.++||++||||||+ +|+||.+|+.+|.++++.++.|+++++|||+|.|+++||+|+|++++....... ..
T Consensus 2 ~~ilve~~~~~gIa~itln~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~~~~-~~ 79 (249)
T d1sg4a1 2 QRVLVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAH-YA 79 (249)
T ss_dssp CSEEEEEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHH-HH
T ss_pred CcEEEEEECCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEeccccccccccccccc-cc
Confidence 4577887556889999999996 699999999999999999999999999999999977899999999875432211 11
Q ss_pred hhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCcee--ecCCCCccCCCCchHHHHHHHhhCHHHH
Q 020093 149 FGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIF--GQTGPKVGSFDAGYGSSIMSRLVGPKKA 226 (331)
Q Consensus 149 ~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f--~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 226 (331)
.....+++++.++.++||||||+|||+|+|||++|+++||+||++++++| ++||+++|++|++|++++|++++|++++
T Consensus 80 ~~~~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 159 (249)
T d1sg4a1 80 GYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAA 159 (249)
T ss_dssp HHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHH
T ss_pred ccchhhHHHHHhhhcCccccchhhcccccccccccccccccceeeccccccccccccccccccccccccccccccccccc
Confidence 11234567889999999999999999999999999999999999999976 7899999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc-CchhHHHHHHHHHHHHhC
Q 020093 227 REMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVDD-GHAGLQTLGGDATLIFYG 305 (331)
Q Consensus 227 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~ 305 (331)
++++++|++++|+||+++||||+|+|++++.+++.++++++++.||.+++.+|+.++.... ......+.+.+.+..++.
T Consensus 160 ~~lll~g~~~~a~~A~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~ 239 (249)
T d1sg4a1 160 ERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATASRLVTQRDADVQNFVSFIS 239 (249)
T ss_dssp HHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred cccccccccccHHHHHhhccccccCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999987643 222233445566677788
Q ss_pred ChhHHHHHH
Q 020093 306 TEEGSEGKT 314 (331)
Q Consensus 306 s~d~~egi~ 314 (331)
+++++|+|+
T Consensus 240 ~e~~~~~le 248 (249)
T d1sg4a1 240 KDSIQKSLQ 248 (249)
T ss_dssp SHHHHHHHT
T ss_pred CHHHHHhcC
Confidence 888888764
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=4.2e-52 Score=389.01 Aligned_cols=252 Identities=20% Similarity=0.263 Sum_probs=213.5
Q ss_pred cccEEEEEeeCCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 68 FTDIIYEKAVGEGIAKITIN-RPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 68 ~~~v~~~~~~~~~v~~ItLn-rp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
++.|.++.. ++||++|+|| ||++.|+||.+|+.+|.++++.++.|+++++|||+|.| ++||+|+||+++........
T Consensus 5 ~~~i~~~~~-~~gva~i~ln~~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g-~~F~aG~Dl~~~~~~~~~~~ 82 (310)
T d1wdka4 5 GKAITVTAL-ESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGK-DVFIVGADITEFVENFKLPD 82 (310)
T ss_dssp CSSEEEEEC-GGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESS-SSSBBCCCHHHHHHHTTSCH
T ss_pred CceEEEEEe-cCCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCC-CCccchhhhhhhhhcccccc
Confidence 467888864 7889999998 89999999999999999999999999999999999998 69999999998754322211
Q ss_pred hhhh--hhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHH
Q 020093 147 ENFG--RLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPK 224 (331)
Q Consensus 147 ~~~~--~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 224 (331)
.... ...+++++..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~iG~~ 162 (310)
T d1wdka4 83 AELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVD 162 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred hhhhhhhhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhhhhh
Confidence 1111 12356788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHH---------------------HHHH----
Q 020093 225 KAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAI---------------------RVLK---- 279 (331)
Q Consensus 225 ~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~---------------------~~~K---- 279 (331)
++++++++|+.++++||+++||||+|||+++|.+.+.+++++++..++... ...+
T Consensus 163 ~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (310)
T d1wdka4 163 NAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVA 242 (310)
T ss_dssp HHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccccCHHHHhhccCccEEccHHHHHHHHHHHHHHHHhcccchhhhhhhhcccccccchhhhHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999987653211 1111
Q ss_pred --------------HHHHcccc-CchhHHHHHHHHHHHHhCChhHHHHHHHHhcCCC
Q 020093 280 --------------SALNAVDD-GHAGLQTLGGDATLIFYGTEEGSEGKTAFVERRR 321 (331)
Q Consensus 280 --------------~~l~~~~~-~~~~~~~~~~~~~~~~~~s~d~~egi~aflekr~ 321 (331)
+++....+ ........|.+.+..++.+++.++++.+|++||.
T Consensus 243 ~~~~~~~pA~~~~l~~v~~~~~~~~~~~L~~E~~~f~~l~~t~~a~~~i~aF~~kr~ 299 (310)
T d1wdka4 243 GQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQE 299 (310)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred hhccCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Confidence 22222222 2234456788889999999999999999999874
|
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Probab=100.00 E-value=3.4e-52 Score=373.99 Aligned_cols=208 Identities=24% Similarity=0.267 Sum_probs=189.5
Q ss_pred CCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHH
Q 020093 78 GEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDL 157 (331)
Q Consensus 78 ~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 157 (331)
+++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||+|.|+++||+|.|++++...............+.++
T Consensus 7 ~d~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 86 (230)
T d2a7ka1 7 SDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDL 86 (230)
T ss_dssp ETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccccccccchhhhhhh
Confidence 78999999999999999999999999999999999999999999998878999999999986432211111112345678
Q ss_pred HHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCC
Q 020093 158 QVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT 237 (331)
Q Consensus 158 ~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~ 237 (331)
+..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|++++|.++|++++++|+.++
T Consensus 87 ~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g-~~~l~~~iG~~~a~~l~l~g~~~~ 165 (230)
T d2a7ka1 87 YQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVG-AAILGFTHGFSTMQEIIYQCQSLD 165 (230)
T ss_dssp HHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHH-HHHHHHHHCHHHHHHHHHHCCCBC
T ss_pred hhcccchhcceeeecccccccccccchhccchhhccccchhhhcccccccccccc-ccccccccccccccccccccccch
Confidence 8999999999999999999999999999999999999999999999999988765 568999999999999999999999
Q ss_pred HHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccc
Q 020093 238 AEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVD 286 (331)
Q Consensus 238 a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~ 286 (331)
|+||+++||||+|+|++++.+++.++|++|++.||.+++.+|+.+++..
T Consensus 166 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~ 214 (230)
T d2a7ka1 166 APRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAFINTKRAVNKPF 214 (230)
T ss_dssp HHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999754
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.1e-50 Score=369.54 Aligned_cols=241 Identities=15% Similarity=0.125 Sum_probs=201.4
Q ss_pred CcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcch
Q 020093 67 EFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADY 146 (331)
Q Consensus 67 ~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~ 146 (331)
+++.|.+++ +++|++||||||+++|+||.+|+.+|.++|++++.|++|++|||+|+| ++||+|+||+++........
T Consensus 3 ~~e~i~~~~--~~~v~~Itlnrp~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g-~~FsaG~Dl~~~~~~~~~~~ 79 (266)
T d1pjha_ 3 QNEKISYRI--EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSG-RFFSSGADFKGIAKAQGDDT 79 (266)
T ss_dssp CBTTEEEEE--ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCCBCHHHHHC------
T ss_pred CCCeEEEEE--ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccc-cccccchhHHHHHhcccccc
Confidence 467899999 999999999999999999999999999999999999999999999999 69999999998754221110
Q ss_pred h--------hh--hhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEe-CCceeecCCCCccCCCCchHHH
Q 020093 147 E--------NF--GRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSS 215 (331)
Q Consensus 147 ~--------~~--~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~ 215 (331)
. .. .......++..+.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~ 159 (266)
T d1pjha_ 80 NKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTV 159 (266)
T ss_dssp -CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhcccccccccccccccccccccc
Confidence 0 00 01234567889999999999999999999999999999999997 5688999999999999999999
Q ss_pred HHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHH------HHHHHHHHhccCHHHHHHHHHHHHccccCc
Q 020093 216 IMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQE------TIKWSREILRNSPTAIRVLKSALNAVDDGH 289 (331)
Q Consensus 216 ~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~ 289 (331)
+|+|++|.++|++|+++|+.++|+||+++||||+|++.+++..+ +.++++.+...++.++..+|+.++......
T Consensus 160 ~l~r~~g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~K~~l~~~~~~~ 239 (266)
T d1pjha_ 160 SLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLKSNHIDA 239 (266)
T ss_dssp HHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTTHHH
T ss_pred ccccccccchhhhhhccCCcCCHHHHHHCCCEeEeeCchhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999987554322 446677777899999999999998653211
Q ss_pred hhHHHHHHHHHHHHhCChhHHHHHHHHhcCCC
Q 020093 290 AGLQTLGGDATLIFYGTEEGSEGKTAFVERRR 321 (331)
Q Consensus 290 ~~~~~~~~~~~~~~~~s~d~~egi~aflekr~ 321 (331)
+. ...+.+..+++++|+++++
T Consensus 240 -----~~------~~~~~e~~~~~~~f~~~~p 260 (266)
T d1pjha_ 240 -----FN------KANSVEVNESLKYWVDGEP 260 (266)
T ss_dssp -----HH------HHHHHHHHHHHHHHHHTHH
T ss_pred -----HH------HHHHHHHHHHHHHHHCCCC
Confidence 11 0124577888888988753
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Probab=100.00 E-value=1.9e-49 Score=360.08 Aligned_cols=217 Identities=21% Similarity=0.279 Sum_probs=196.9
Q ss_pred CCCcccEEEEEeeCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCc
Q 020093 65 GTEFTDIIYEKAVGEGIAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYA 144 (331)
Q Consensus 65 ~~~~~~v~~~~~~~~~v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~ 144 (331)
...|++|++++ +++|++||||||+++|+||.+|+.+|.+++++++.|+++++|||+|.| ++||+|+|++++......
T Consensus 9 ~~~y~~i~~~~--~~~v~~itln~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g-~~FsaG~Dl~~~~~~~~~ 85 (249)
T d1szoa_ 9 SQKYENIRLER--DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTG-PSFCNEIDFTSFNLGTPH 85 (249)
T ss_dssp TTSCTTEEEEE--ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBT-TBSBCEECGGGSCCSSHH
T ss_pred hCCCCeEEEEE--ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcceEeeeccc-ccccccchhhhhhccccc
Confidence 45789999999 999999999999999999999999999999999999999999999999 599999999987543221
Q ss_pred chhhhhhhhHHHHHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceee-cCCCCccCCCCchHHHHHHHhhCH
Q 020093 145 DYENFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG-QTGPKVGSFDAGYGSSIMSRLVGP 223 (331)
Q Consensus 145 ~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~-~pe~~~Gl~p~~g~~~~L~r~vG~ 223 (331)
... .....++.++..+.++||||||+|+|+|. ||++|+++||+||++++++|. +||.++|++|++|++++|+|++|.
T Consensus 86 ~~~-~~~~~~~~l~~~i~~~~~pvIa~v~g~~~-GG~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~ 163 (249)
T d1szoa_ 86 DWD-EIIFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGS 163 (249)
T ss_dssp HHH-HHHHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCH
T ss_pred chh-hhhhhhhhhhhhcccCcccceeeeccccc-cccccccccccccccCCcEEEEeeccccccccccccccccccccCc
Confidence 111 11224567888999999999999999885 577999999999999999995 799999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhccCHHHHHHHHHHHHccc
Q 020093 224 KKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRNSPTAIRVLKSALNAVD 286 (331)
Q Consensus 224 ~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~ 286 (331)
.++++|+++|+.++++||+++||||+|||++++.+++.++|++|++.||.+++.+|+.+++..
T Consensus 164 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~ 226 (249)
T d1szoa_ 164 NRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLARRYARKVLTRQL 226 (249)
T ss_dssp HHHHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHSHHH
T ss_pred cceeeecccCCCCCHHHHHHhCCcCcccCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998754
|
| >d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.31 E-value=2.2e-06 Score=71.43 Aligned_cols=135 Identities=15% Similarity=0.153 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHhccc---CCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 020093 95 FRPHTVKELIRAFNDARD---DSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (331)
Q Consensus 95 l~~~~~~eL~~al~~~~~---d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa 171 (331)
++.++..++...|..++. ++.+.+. |.+.| +|+.. ...++..|..++.||...
T Consensus 22 I~~~~~~~~i~~l~~l~~~~~~~~I~l~-InS~G-------G~v~~----------------gl~i~d~i~~~~~~v~t~ 77 (179)
T d2cbya1 22 VNDEIANRLCAQILLLAAEDASKDISLY-INSPG-------GSISA----------------GMAIYDTMVLAPCDIATY 77 (179)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSSCEEEE-EEECC-------BCHHH----------------HHHHHHHHHHCSSCEEEE
T ss_pred ECHHHHHHHHHHHHHHhccCCCCeEEEE-eeCCC-------CCHHH----------------HHHHHHHHHhhccceeee
Confidence 789999999887755542 2334433 45444 33321 124556788899999999
Q ss_pred EcCccccchhhhhhccc--EEEEeCCceeecCCCCccCCCCch---HH-H-----------HHHHhhC--HHHHHHHHHc
Q 020093 172 VAGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGY---GS-S-----------IMSRLVG--PKKAREMWFL 232 (331)
Q Consensus 172 v~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g---~~-~-----------~L~r~vG--~~~a~~l~lt 232 (331)
+.|.|.+.|.-|.+++| .|++.++++|-+-+...|...... .. . .+.+..| ...-.+++-.
T Consensus 78 ~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~~~~~ 157 (179)
T d2cbya1 78 AMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDR 157 (179)
T ss_dssp EEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHT
T ss_pred hhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhhcC
Confidence 99999999999999999 899999999998777655421100 00 0 0111112 2234455556
Q ss_pred CCCCCHHHHHhcCcccEecCC
Q 020093 233 ARFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 233 G~~~~a~eA~~~GLv~~vv~~ 253 (331)
-..++|+||+++||||+|+..
T Consensus 158 d~~l~a~EA~~~GliDeIi~~ 178 (179)
T d2cbya1 158 DRWFTAAEALEYGFVDHIITR 178 (179)
T ss_dssp TCEEEHHHHHHHTSCSEECSC
T ss_pred CceecHHHHHHcCCCcEEecC
Confidence 678999999999999999864
|
| >d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Escherichia coli [TaxId: 562]
Probab=98.29 E-value=9.9e-07 Score=73.82 Aligned_cols=132 Identities=15% Similarity=0.146 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHhcccCC---CeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 020093 95 FRPHTVKELIRAFNDARDDS---SVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (331)
Q Consensus 95 l~~~~~~eL~~al~~~~~d~---~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa 171 (331)
++.++..++...+..++.++ .|. |.|.+.| +|+.. ...++..|..++.||+..
T Consensus 25 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS~G-------G~v~~----------------g~~i~d~i~~~~~~v~tv 80 (183)
T d1yg6a1 25 VEDHMANLIVAQMLFLEAENPEKDIY-LYINSPG-------GVITA----------------GMSIYDTMQFIKPDVSTI 80 (183)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEECC-------BCHHH----------------HHHHHHHHHHSSSCEEEE
T ss_pred ECHHHHHHHHHHHHHhhhhccCCceE-EEEeCCC-------ccHHH----------------HHHHHHHHHhCCCCEEEE
Confidence 78899999988887776432 333 3345544 34321 224667888999999999
Q ss_pred EcCccccchhhhhhccc--EEEEeCCceeecCCCCccCCCCchHHHHH------------------HHhhC--HHHHHHH
Q 020093 172 VAGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGSSIM------------------SRLVG--PKKAREM 229 (331)
Q Consensus 172 v~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L------------------~r~vG--~~~a~~l 229 (331)
+.|.|.+.|.-|.++|| .|++.++++|-+-+...|.. |...-+ .+..| ...-.++
T Consensus 81 ~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~---G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~e~i~~~ 157 (183)
T d1yg6a1 81 CMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQ---GQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERD 157 (183)
T ss_dssp EEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEE---EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred EEEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999999998 79999999999887766542 112111 11112 2223333
Q ss_pred HHcCCCCCHHHHHhcCcccEecCC
Q 020093 230 WFLARFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 230 ~ltG~~~~a~eA~~~GLv~~vv~~ 253 (331)
+-.-..++|+||+++||||+|+..
T Consensus 158 ~~~d~~lta~EAl~~GliD~Ii~~ 181 (183)
T d1yg6a1 158 TERDRFLSAPEAVEYGLVDSILTH 181 (183)
T ss_dssp TSSCEEEEHHHHHHHTSSSEECCC
T ss_pred hccCccccHHHHHHcCCCcEEecc
Confidence 333345899999999999999864
|
| >d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.17 E-value=1.2e-05 Score=67.64 Aligned_cols=135 Identities=13% Similarity=0.126 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHHHhcccC---CCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 020093 95 FRPHTVKELIRAFNDARDD---SSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (331)
Q Consensus 95 l~~~~~~eL~~al~~~~~d---~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa 171 (331)
++.++...+...|..++.+ ..+. +.|.+.|+ |+.. ...++..|..++.||...
T Consensus 33 I~~~~~~~~~~~l~~l~~~~~~~~I~-l~InS~GG-------~v~~----------------glai~d~i~~~~~~v~t~ 88 (192)
T d1y7oa1 33 VEDNMANSVIAQLLFLDAQDSTKDIY-LYVNTPGG-------SVSA----------------GLAIVDTMNFIKADVQTI 88 (192)
T ss_dssp BCHHHHHHHHHHHHHHHHHCTTSCEE-EEEEECCB-------CHHH----------------HHHHHHHHHHSSSCEEEE
T ss_pred EchHHHHHHHHHHHHhhhhcccCcee-eeecCCCC-------CHHH----------------HHHHHHHHHhcCcceEEE
Confidence 7899999998877666522 2344 34466553 3321 124566788899999999
Q ss_pred EcCccccchhhhhhc--ccEEEEeCCceeecCCCCccCCCCchHH------HHH-----------HHhhC--HHHHHHHH
Q 020093 172 VAGYAVGGGHVLHMV--CDLTIAADNAIFGQTGPKVGSFDAGYGS------SIM-----------SRLVG--PKKAREMW 230 (331)
Q Consensus 172 v~G~a~GgG~~Lal~--cD~~ia~~~a~f~~pe~~~Gl~p~~g~~------~~L-----------~r~vG--~~~a~~l~ 230 (331)
+.|.|.+.|.-|.++ ||.|++.++++|-+-+...|........ ..+ ....| ...-.+.+
T Consensus 89 ~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~~~~i~~~~ 168 (192)
T d1y7oa1 89 VMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADA 168 (192)
T ss_dssp EEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred eccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhh
Confidence 999999999888775 5799999999999988877653211111 011 11112 23345555
Q ss_pred HcCCCCCHHHHHhcCcccEecCC
Q 020093 231 FLARFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 231 ltG~~~~a~eA~~~GLv~~vv~~ 253 (331)
-.-..++|+||+++||||+|+..
T Consensus 169 ~rd~~lsa~EAleyGliD~Ii~~ 191 (192)
T d1y7oa1 169 ERDNWMSAQETLEYGFIDEIMAN 191 (192)
T ss_dssp HSCCCBCHHHHHHHTSCSEECCC
T ss_pred cCCceecHHHHHHcCCCcEEecC
Confidence 56678999999999999999854
|
| >d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=98.00 E-value=2.8e-05 Score=65.31 Aligned_cols=132 Identities=14% Similarity=0.169 Sum_probs=90.5
Q ss_pred CCHHHHHHHHHHHHhccc---CCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 020093 95 FRPHTVKELIRAFNDARD---DSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (331)
Q Consensus 95 l~~~~~~eL~~al~~~~~---d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa 171 (331)
++.++...+...|..++. +..+...+ .+.|+ |+.. ...++..|..++.||...
T Consensus 35 I~~~~~~~~i~~l~~l~~~~~~~~I~l~I-nS~GG-------~v~~----------------g~~i~d~i~~~~~~V~tv 90 (193)
T d1tg6a1 35 IDDSVASLVIAQLLFLQSESNKKPIHMYI-NSPGG-------VVTA----------------GLAIYDTMQYILNPICTW 90 (193)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCB-------CHHH----------------HHHHHHHHHHSCSCEEEE
T ss_pred EchHHHHHHHHHHHHhcccCCCcEEEEEe-ecCcc-------cHHH----------------HHHHHHHHHhhcCceEEE
Confidence 788888888877666553 23455444 55553 2211 124566788899999999
Q ss_pred EcCccccchhhhhhccc--EEEEeCCceeecCCCCccCCCCchHHHH-----------------HHHhhC--HHHHHHHH
Q 020093 172 VAGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGSSI-----------------MSRLVG--PKKAREMW 230 (331)
Q Consensus 172 v~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~~~-----------------L~r~vG--~~~a~~l~ 230 (331)
+.|.|.+.|.-|.+++| .|++.++++|-+-+...|... -.... +....| ....++++
T Consensus 91 ~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~G--~~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i~~~~ 168 (193)
T d1tg6a1 91 CVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARG--QATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAM 168 (193)
T ss_dssp EEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred EccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCCc--CHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 99999999999999999 599999999999888766531 11211 111111 22333444
Q ss_pred HcCCCCCHHHHHhcCcccEecC
Q 020093 231 FLARFYTAEEAEKMGLVNTVVP 252 (331)
Q Consensus 231 ltG~~~~a~eA~~~GLv~~vv~ 252 (331)
-.-..++|+||+++||||+|+.
T Consensus 169 ~rD~~lta~EAl~yGliD~Ii~ 190 (193)
T d1tg6a1 169 ERDRYMSPMEAQEFGILDKVLV 190 (193)
T ss_dssp SSCEEECHHHHHHHTSCSEECS
T ss_pred ccCccCCHHHHHHcCCCCEEcc
Confidence 3334699999999999999984
|
| >d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Plasmodium falciparum [TaxId: 5833]
Probab=97.97 E-value=6.9e-05 Score=62.63 Aligned_cols=132 Identities=14% Similarity=0.137 Sum_probs=91.2
Q ss_pred CCHHHHHHHHHHHHhcccC--CCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 020093 95 FRPHTVKELIRAFNDARDD--SSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (331)
Q Consensus 95 l~~~~~~eL~~al~~~~~d--~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav 172 (331)
+|.++..++...|..++.. +.|.+ .|.+.| +|+.. ...++..+..++.||...+
T Consensus 27 Id~~~~~~~i~~l~~l~~~~~~~I~l-~INS~G-------G~v~~----------------g~ai~d~i~~~~~~v~tv~ 82 (190)
T d2f6ia1 27 INKKTADELISQLLYLDNINHNDIKI-YINSPG-------GSINE----------------GLAILDIFNYIKSDIQTIS 82 (190)
T ss_dssp BCHHHHHHHHHHHHHHHHHCCSCEEE-EEEECC-------BCHHH----------------HHHHHHHHHHSSSCEEEEE
T ss_pred eCHHHHHHHHHHHHHHhccCCCCeEE-EEeCch-------hhhhH----------------HHHHHHHHHhhCCceEEEE
Confidence 8899999998888777542 33433 344444 34321 1245667788999999999
Q ss_pred cCccccchhhhhhccc--EEEEeCCceeecCCCCccCCCCchHHH------------------HHHHhhCH--HHHHHHH
Q 020093 173 AGYAVGGGHVLHMVCD--LTIAADNAIFGQTGPKVGSFDAGYGSS------------------IMSRLVGP--KKAREMW 230 (331)
Q Consensus 173 ~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~L~r~vG~--~~a~~l~ 230 (331)
.|.|.+.|.-|.+++| .|++.++++|-+.....|.. |... .+.+..|. ..-.+.+
T Consensus 83 ~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~---G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i~~~~ 159 (190)
T d2f6ia1 83 FGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAF---GHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDS 159 (190)
T ss_dssp EEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC-----------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred eccccchhHHHHHhCCCCccccCCCcEEEEcccccccC---CcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhc
Confidence 9999999999999988 69999999999988876642 1111 11122221 1233344
Q ss_pred HcCCCCCHHHHHhcCcccEecCC
Q 020093 231 FLARFYTAEEAEKMGLVNTVVPL 253 (331)
Q Consensus 231 ltG~~~~a~eA~~~GLv~~vv~~ 253 (331)
-.-..++|+||+++||||+|+..
T Consensus 160 ~~d~~l~a~EAl~~GliD~Ii~~ 182 (190)
T d2f6ia1 160 DRDYYMNALEAKQYGIIDEVIET 182 (190)
T ss_dssp HTTCEECHHHHHHHTSCSEECCC
T ss_pred cCCeeecHHHHHHcCCCcEEccc
Confidence 44457999999999999999964
|
| >d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=97.77 E-value=0.00019 Score=62.51 Aligned_cols=153 Identities=14% Similarity=0.169 Sum_probs=93.7
Q ss_pred CCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEG-IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~-v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
++. |.++-.+--=+.-+++....+.+..+.+.+.+.. +-+|.+.-. +|+.+.+-. ....... ....
T Consensus 87 ~gr~v~v~a~Dftv~GGS~g~~~~~K~~~a~e~A~~~~-lPlV~l~~s------gG~r~~eg~----~~l~~~~--~~~~ 153 (253)
T d1on3a1 87 LGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTG-TPFLFFYDS------GGARIQEGI----DSLSGYG--KMFF 153 (253)
T ss_dssp TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEEE------CSBCGGGTH----HHHHHHH--HHHH
T ss_pred eceechhhhchhhhhcccceecccchhhhhHHHHhhcC-CCeEEEEec------CCCcccccc----eeccccc--eehH
Confidence 444 4444444444667889999999999988887653 345554322 233443210 0000000 1111
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCC
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFY 236 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~ 236 (331)
....+. -..|+|+++.|+|.||+.....+||++|+.+++.+++.. |++| . ..+|+.+
T Consensus 154 ~~~~ls-~~vP~i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~~aG---------------P~vV-----e--~~~ge~~ 210 (253)
T d1on3a1 154 ANVKLS-GVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITG---------------PQVI-----K--SVTGEDV 210 (253)
T ss_dssp HHHHHT-TTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESSC---------------HHHH-----H--HHHCCCC
T ss_pred HHHHHh-ccceEEEEEecCcccceeeccchhhheeccccceEEecC---------------cchh-----h--hhhCCcC
Confidence 122333 348999999999999999999999999999988777521 1111 1 1346777
Q ss_pred CHHH-------HHhcCcccEecCCCcHHHHHHHHHHHHhc
Q 020093 237 TAEE-------AEKMGLVNTVVPLEKLEQETIKWSREILR 269 (331)
Q Consensus 237 ~a~e-------A~~~GLv~~vv~~~~l~~~a~~~a~~la~ 269 (331)
+.+| +.+-|.||.+++.++ ++.++++++.+
T Consensus 211 ~~eelGga~~h~~~sG~iD~v~~~e~---~a~~~~r~lls 247 (253)
T d1on3a1 211 TADELGGAEAHMAISGNIHFVAEDDD---AAELIAKKLLS 247 (253)
T ss_dssp CHHHHHSHHHHHHTTCCCSEEESSHH---HHHHHHHHHHH
T ss_pred ChHhccCHHHhhhccccceEEECCHH---HHHHHHHHHHH
Confidence 7664 345799999998865 45566655543
|
| >d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=0.00013 Score=64.02 Aligned_cols=154 Identities=15% Similarity=0.217 Sum_probs=94.6
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHH
Q 020093 81 IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQ 160 (331)
Q Consensus 81 v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (331)
|+++-.+--=..-+++....+.+..+.+.+.+. .+=+|.++-.| |+.+.+-. ...............
T Consensus 98 v~v~a~Dftv~gGS~g~~~~~Ki~~a~e~A~~~-~lPlI~~~~sg------G~r~~e~~------~sl~~~~~~~~~~~~ 164 (263)
T d2f9yb1 98 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSASG------GARMQEAL------MSLMQMAKTSAALAK 164 (263)
T ss_dssp CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES------SBCGGGTH------HHHHHHHHHHHHHHH
T ss_pred EEEEeeeehhhccccccchhhHHhHHHHHHHHc-CCCeEEEecCC------Cccccccc------chhhcchhHHHHHHH
Confidence 444455544466788888889999888877654 34456554323 44443211 000111112233344
Q ss_pred HHcCCCcEEEEEcCccccchh-hhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCC--
Q 020093 161 IRRLPKPVIAMVAGYAVGGGH-VLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYT-- 237 (331)
Q Consensus 161 l~~~~kPvIAav~G~a~GgG~-~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~-- 237 (331)
+.....|+|+++.|+|.||+. .+++++|++++.+.+.+++.. |+.| . ..+|+.++
T Consensus 165 ~~~~~vP~I~v~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~aG---------------P~vv-----e--~~~ge~~~e~ 222 (263)
T d2f9yb1 165 MQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAG---------------PRVI-----E--QTVREKLPPG 222 (263)
T ss_dssp HHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSC---------------HHHH-----H--HHHTSCCCTT
T ss_pred HHhCCCceEEEecCCcchHHHhhhhhcCceEeeecceeeeccC---------------HHHH-----h--hhcCCcCChh
Confidence 566789999999999999975 588888999988888777621 1111 1 13344443
Q ss_pred ---HHHHHhcCcccEecCCCcHHHHHHHHHHHHhc
Q 020093 238 ---AEEAEKMGLVNTVVPLEKLEQETIKWSREILR 269 (331)
Q Consensus 238 ---a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~ 269 (331)
++-..+-|+||.++++++..+...++.+.|..
T Consensus 223 ~g~a~~~~~~G~iD~vv~~ee~~~~l~~~l~~L~~ 257 (263)
T d2f9yb1 223 FQRSEFLIEKGAIDMIVRRPEMRLKLASILAKLMN 257 (263)
T ss_dssp TTBHHHHGGGTCCSEECCHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHhCCCCCEEECCHHHHHHHHHHHHHHhh
Confidence 44446789999999877765555555555543
|
| >d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.61 E-value=0.00078 Score=58.69 Aligned_cols=150 Identities=15% Similarity=0.179 Sum_probs=93.5
Q ss_pred CCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEG-IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~-v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
++. |+++-.|..=+.-+++....+.+..+++.+.+. .+=+|.|.-.| |+.+.+-. ... .....
T Consensus 86 ~G~~v~v~a~Dftv~gGS~g~~~~~K~~r~~e~A~~~-~lPlI~l~dsg------Garm~e~~-------~~~--~~~~~ 149 (258)
T d1xnya1 86 DGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKT-GCPVVGINDSG------GARIQEGV-------ASL--GAYGE 149 (258)
T ss_dssp TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC------SBCGGGTH-------HHH--HHHHH
T ss_pred CCEEEEEEechhhhhcCccchhhHHHHHHHHHHHHHc-CCceEEEecCC------CcccCccc-------ccc--cchhH
Confidence 444 555555544467788999999999998887765 34566665544 44443211 000 00111
Q ss_pred HHHHH--HcCCCcEEEEEcCccccchhhhhhcccEEEEeC-CceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcC
Q 020093 157 LQVQI--RRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAAD-NAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLA 233 (331)
Q Consensus 157 l~~~l--~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG 233 (331)
++..+ ..-..|+|++|.|+|.||+.....+||++|+.+ .+.+++.. |++| . ..+|
T Consensus 150 ~~~~~~~~s~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~aG---------------P~vv-----~--~~~g 207 (258)
T d1xnya1 150 IFRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITG---------------PDVI-----K--TVTG 207 (258)
T ss_dssp HHHHHHHTTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESSC---------------HHHH-----H--HHHC
T ss_pred HHHHHHHHcCCCCEEEEEcCCcChhHHHHHHhccchhhcccceEEEecC---------------HHHH-----H--HHhc
Confidence 22222 234599999999999999999998899888775 56666521 1111 1 3568
Q ss_pred CCCCHHHH-------HhcCcccEecCCCcHHHHHHHHHHHHh
Q 020093 234 RFYTAEEA-------EKMGLVNTVVPLEKLEQETIKWSREIL 268 (331)
Q Consensus 234 ~~~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la 268 (331)
+.++.+|+ ..-|++|.+++++ +++.+.++++.
T Consensus 208 e~i~~eelgga~~h~~~sG~~d~v~~de---~ea~~~~r~~L 246 (258)
T d1xnya1 208 EDVGFEELGGARTHNSTSGVAHHMAGDE---KDAVEYVKQLL 246 (258)
T ss_dssp CCCCHHHHHBHHHHHHTSSCCSEEESSH---HHHHHHHHHHH
T ss_pred CccChHHhccHHHHHhcCCeeEEEeCCH---HHHHHHHHHHH
Confidence 88888874 4579999999764 34444444443
|
| >d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.57 E-value=0.0012 Score=57.48 Aligned_cols=152 Identities=16% Similarity=0.151 Sum_probs=93.8
Q ss_pred CCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEG-IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~-v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
++. |.++-.+---+.-+++....+.+..+.+.+.++. +-+|.|.-.| |..+.+-. ..... ...+..
T Consensus 87 ~G~~v~v~a~Dft~~gGS~g~~~g~K~~ra~e~A~~~~-lP~I~l~dsg------Gar~~eg~----~~~~~--~~~~~~ 153 (258)
T d2a7sa1 87 DGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTG-RPLIGINDGA------GARIQEGV----VSLGL--YSRIFR 153 (258)
T ss_dssp SSSEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC------SBCGGGCT----HHHHH--HHHHHH
T ss_pred ccceEEEecccceEeCCccchhhhhHHHHHHHHHHhcC-CceEEEeccC------Cccccccc----ccccc--hhhHHH
Confidence 444 4444455444677899999999999988877653 4455554322 44554310 00000 011112
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEe-CCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCC
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAA-DNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF 235 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~ 235 (331)
.. .......|+|++|.|+|.||+......||++|+. +.+.+++. |+...+ ..+|+.
T Consensus 154 ~~-~~~~~~vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i~~a--------------------GP~vV~--~~~ge~ 210 (258)
T d2a7sa1 154 NN-ILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT--------------------GPDVIK--TVTGEE 210 (258)
T ss_dssp HH-HHHTTTSCEEEEECSCCBSGGGHHHHHSSEEEEEBTTBBCBSS--------------------CHHHHH--HHHCCC
T ss_pred HH-HHHcCCCCEEEEEecCcccHHHHHHHhccceEeecCceEEEcc--------------------ChhHHH--HhcCCc
Confidence 21 2345679999999999999999999999998886 45655541 121111 247888
Q ss_pred CCHHHH-------HhcCcccEecCCCcHHHHHHHHHHHHh
Q 020093 236 YTAEEA-------EKMGLVNTVVPLEKLEQETIKWSREIL 268 (331)
Q Consensus 236 ~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la 268 (331)
++.+|. .+.|.+|.+++++ +++.+.++++.
T Consensus 211 ~~~eeLGga~~h~~~sG~~D~v~~de---~~a~~~~r~~L 247 (258)
T d2a7sa1 211 VTMEELGGAHTHMAKSGTAHYAASGE---QDAFDYVRELL 247 (258)
T ss_dssp CCHHHHHBHHHHHHTSCCCSEEESSH---HHHHHHHHHHH
T ss_pred cChhhccCHhHhhhhccccceEeCCH---HHHHHHHHHHH
Confidence 887763 4679999999865 23444444444
|
| >d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=97.55 E-value=0.0009 Score=58.04 Aligned_cols=153 Identities=15% Similarity=0.183 Sum_probs=93.0
Q ss_pred CCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEG-IAKITINRPDRRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~-v~~ItLnrp~~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
++. |+++-.+---+.-+++....+.+..+.+.+.+.. +=+|.|...| |+.+.+-.. .... ...+..
T Consensus 84 ~G~~v~v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~~-~P~I~~~dsg------G~r~~e~~~----~l~~--~~~~~~ 150 (251)
T d1vrga1 84 NGRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMG-IPVIGINDSG------GARIQEGVD----ALAG--YGEIFL 150 (251)
T ss_dssp TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEEEC------SBCGGGTHH----HHHH--HHHHHH
T ss_pred ccEEEEEeeehhhhhhcccchHHHHHHHHHHHHHHHcC-CCEEEEEcCC------Ccccccccc----cccc--chHHHH
Confidence 444 4444444333567888888888888888776553 3455554433 444433110 0000 011111
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCC-ceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCC
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADN-AIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARF 235 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~ 235 (331)
.. ....-..|+|++|.|+|.||+......||++|+.++ +.+++. + |+++- ..+|+.
T Consensus 151 ~~-~~~s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i~~a---------G------p~vv~-------~~~ge~ 207 (251)
T d1vrga1 151 RN-TLASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFIT---------G------PNVIK-------AVTGEE 207 (251)
T ss_dssp HH-HHHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSS---------C------HHHHH-------HHHCCC
T ss_pred HH-HHHCCCCCEEEEEccCccccceehhhhCceEEEEccceeEEec---------C------chhhh-------hhcCCc
Confidence 11 233557999999999999999999999999998754 544331 1 22221 256788
Q ss_pred CCHHHH-------HhcCcccEecCCCcHHHHHHHHHHHHhc
Q 020093 236 YTAEEA-------EKMGLVNTVVPLEKLEQETIKWSREILR 269 (331)
Q Consensus 236 ~~a~eA-------~~~GLv~~vv~~~~l~~~a~~~a~~la~ 269 (331)
++.+|. .+-|++|.+++++ +++.+.++++.+
T Consensus 208 ~~~eelGga~~h~~~sG~~D~v~~de---~~a~~~ir~lLs 245 (251)
T d1vrga1 208 ISQEDLGGAMVHNQKSGNAHFLADND---EKAMSLVRTLLS 245 (251)
T ss_dssp CCHHHHHBHHHHHHTSCCCSEEESSH---HHHHHHHHHHHT
T ss_pred CChHHccchhhhhhccccceEEECCH---HHHHHHHHHHHH
Confidence 998875 4679999999875 345555555544
|
| >d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=97.38 E-value=0.0004 Score=61.55 Aligned_cols=177 Identities=15% Similarity=0.127 Sum_probs=98.3
Q ss_pred CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~-~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
++.-+.|.-|.+. +.-+++....+.+.++++.+.+. .+=+|.|.-.| |..+.+-.... ....... ....
T Consensus 102 ~G~~v~v~a~D~t~~gGs~~~~~~~K~~r~~~lA~~~-~lP~I~l~ds~------Ga~~~~~~e~~-~~~~~~g--~~~~ 171 (287)
T d1pixa2 102 NGKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTL-HVPLVYVLNCS------GVKFDEQEKVY-PNRRGGG--TPFF 171 (287)
T ss_dssp TTEEEEEEEECTTTTTTEECTTHHHHHHHHHHHHHHH-TCCEEEEECCC------EECGGGHHHHS-SSTTSTT--HHHH
T ss_pred ccceEEEEEeccccccccchhhHHHHHHHHHHhhhhc-CCCEEEEecCC------cccCCcchhhc-cchhhHH--HHHH
Confidence 5544445555544 45688888889888888877654 34466564433 44443211000 0000000 1111
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCc--cCCCCchHHHHHHHhhCHHHHHHHHHcCC
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKV--GSFDAGYGSSIMSRLVGPKKAREMWFLAR 234 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~--Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~ 234 (331)
-+..+.....|+|++|-|.|.|||.-.+++||++++.+++.+.+....+ +..+..+........+...... -.+-+
T Consensus 172 ~~a~ls~~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~~~~~~~~~~~ei~~~~ge--~~~~e 249 (287)
T d1pixa2 172 RNAELNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIADMVDR--TGKTE 249 (287)
T ss_dssp HHHHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSSSSCCHHHHHHHHHHHHT--TCCCC
T ss_pred HHHHHhhcCCCeEEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccchhhhhhhhhHHHHHhhhcc--ccccc
Confidence 1234566789999999999999998889999999999999888754433 2222221111111111110000 01234
Q ss_pred CCCHHHH--HhcCcccEecCCCcHHHHHHHHHHHHhc
Q 020093 235 FYTAEEA--EKMGLVNTVVPLEKLEQETIKWSREILR 269 (331)
Q Consensus 235 ~~~a~eA--~~~GLv~~vv~~~~l~~~a~~~a~~la~ 269 (331)
.+.+.+. ..-|++|.++++| +++.+.++++.+
T Consensus 250 eLGGa~~H~~~sG~~d~v~~~e---~~ai~~~r~~ls 283 (287)
T d1pixa2 250 PPGAVDIHYTETGFMREVYASE---EGVLEGIKKYVG 283 (287)
T ss_dssp CSSBHHHHTTTSCCSCEEESSH---HHHHHHHHHHHH
T ss_pred ccccHHHhhhhcccceeecCCH---HHHHHHHHHHHh
Confidence 4455543 4579999999775 355566666554
|
| >d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.0022 Score=57.18 Aligned_cols=138 Identities=17% Similarity=0.144 Sum_probs=93.4
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 020093 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (331)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav 172 (331)
-.++++-++.-.+.++.++.- ++=+|-|.=+.+ |-.|.+-++.. ....+.+++..+..+..|+|+.|
T Consensus 130 G~~~p~~~rKa~r~~~~a~~~-~~Pii~~vDtpG--~~~g~~~E~~g----------~~~~~a~~~~~~~~~~vP~i~vv 196 (316)
T d2f9ya1 130 GMPAPEGYRKALRLMQMAERF-KMPIITFIDTPG--AYPGVGAEERG----------QSEAIARNLREMSRLGVPVVCTV 196 (316)
T ss_dssp GCCCHHHHHHHHHHHHHHHHT-TCCEEEEEEESC--SCCSHHHHHTT----------HHHHHHHHHHHHHTCSSCEEEEE
T ss_pred ccccHHHHHHHHHHHHHHHHc-CcceEEEEecCc--ccCCccccccc----------HHHHHHHHHHHHHhCCCceEEEE
Confidence 357888888888888877754 455555544331 33343332211 12235567788999999999999
Q ss_pred cCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCCCHHHHHhcCcccEecC
Q 020093 173 AGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFYTAEEAEKMGLVNTVVP 252 (331)
Q Consensus 173 ~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~~a~eA~~~GLv~~vv~ 252 (331)
-|-+.|||+-....+|.+++-++|+++. +.+-|.+..|.+--. ++.+.. ....+++++.+++|+||+|++
T Consensus 197 ~g~g~~gga~a~~~~d~v~m~~~a~~sv-------ispEg~AsILwkd~~--~a~eaA-ealklta~dL~~lgiIDeII~ 266 (316)
T d2f9ya1 197 IGEGGSGGALAIGVGDKVNMLQYSTYSV-------ISPEGCASILWKSAD--KAPLAA-EAMGIIRPRLKELKLIDSIIP 266 (316)
T ss_dssp EEEEEHHHHHTTCCCSEEEECTTCEEES-------SCHHHHHHHHSSCST--THHHHH-HHHTCSHHHHHTTTSCSCCCC
T ss_pred EhhhhchhhhhhhhhhHHHHHhhhHHhh-------ccchhhhhHhhccch--hhcchH-HHHhhhhHHHHHcCchhhccc
Confidence 9999999998888899999999999984 233344444443211 122211 124589999999999999996
Q ss_pred C
Q 020093 253 L 253 (331)
Q Consensus 253 ~ 253 (331)
.
T Consensus 267 E 267 (316)
T d2f9ya1 267 E 267 (316)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.96 E-value=0.0036 Score=54.67 Aligned_cols=168 Identities=17% Similarity=0.174 Sum_probs=107.6
Q ss_pred CCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRPDR-RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~~-~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
+|.-.-|.-|+|.. ..+++.+-.+...+.++.++.. ++=+|.|.-.. .|..|.+-.... ......+
T Consensus 68 ~G~~vgvian~~~~~~G~~~~~~~~Ka~rfi~lc~~~-~iPlv~l~dtp--Gf~~G~~~E~~g----------~~~~ga~ 134 (271)
T d2a7sa2 68 DGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDVP--GFLPGTDQEYNG----------IIRRGAK 134 (271)
T ss_dssp SSCEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC--CBCCCHHHHHHC----------HHHHHHH
T ss_pred CCeEEEEEeccccccCCCcCHHHHHHHHHHHHHHHHh-CCceEEeechh--hhhhhccHHHhh----------HHHHHHH
Confidence 55544455566653 2589999999999999888754 67788887765 477775443211 1123457
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhh----hcccEEEEeCCceeecCCCCccCCCCchHHHHHHHh-hCHH-------
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLH----MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL-VGPK------- 224 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~La----l~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~-vG~~------- 224 (331)
++.++..+..|.|+.|-|.+.|||.... +.+|++++.++++++. .++-++...+.+. +...
T Consensus 135 ~~~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igv-------Mgpegaa~v~~~~~l~~~~~~~~~~ 207 (271)
T d2a7sa2 135 LLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV-------MGASGAVGFVYRQQLAEAAANGEDI 207 (271)
T ss_dssp HHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTTTTTTGGGTSSCCT
T ss_pred HHHHHHhCCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEee-------cCHHHHHHHHHHHhhhhhhhcccch
Confidence 8889999999999999999999875322 3479998888887775 2223333333221 1110
Q ss_pred ---H-HHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHH
Q 020093 225 ---K-AREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSR 265 (331)
Q Consensus 225 ---~-a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~ 265 (331)
+ ....-+.-+.-++-.+.+.|++|.|+++.+..+......+
T Consensus 208 ~~~~~~~~~e~~e~~~~p~~aa~~g~iD~VIdP~dTR~~L~~~L~ 252 (271)
T d2a7sa2 208 DKLRLRLQQEYEDTLVNPYVAAERGYVDAVIPPSHTRGYIGTALR 252 (271)
T ss_dssp TSSTTHHHHHHHTTTSBSHHHHHHTSSSEECCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHH
Confidence 0 1111122233466778889999999999887665444433
|
| >d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=96.79 E-value=0.012 Score=50.98 Aligned_cols=168 Identities=14% Similarity=0.165 Sum_probs=105.2
Q ss_pred CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~-~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
+|...-|.-|+|. ...+++.+-.+...+.++.++.. ++=.|.|.-.. .|-.|.+-... .. .....+
T Consensus 65 ~G~~vgvian~~~~~~G~~~~~~a~Kaa~fi~lc~~~-~iPli~l~Dtp--Gf~~G~~~E~~---------g~-~~~ga~ 131 (264)
T d1vrga2 65 QGKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDTP--GYLPGVAQEHG---------GI-IRHGAK 131 (264)
T ss_dssp TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC--CBCCCHHHHHT---------TH-HHHHHH
T ss_pred cCceEEEEeccccccccchhhhhHHHHHHHHHHHHHh-CCceEEEeecc--cccccHHHHHH---------hH-HHHHHH
Confidence 5544444455554 33579999999999988888764 56777776654 36666544321 11 123457
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhh----hcccEEEEeCCceeecCCCCccCCCCchHHHHHHHh-h---C-H-HHH
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLH----MVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL-V---G-P-KKA 226 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~La----l~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~-v---G-~-~~a 226 (331)
++..+..+..|.|+.|-|.+.|||..-. +.+|++++-+++.++. ..+.++...+.+. + . . ...
T Consensus 132 ~~~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~v-------m~pe~aa~v~~~~~l~~~~~~~~~~ 204 (264)
T d1vrga2 132 LLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAV-------MGPEGAANIIFKREIEASSNPEETR 204 (264)
T ss_dssp HHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHHSSCHHHHH
T ss_pred HHHHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEe-------cCHHHhhhhhhhhhhhhhhCcHHHH
Confidence 8889999999999999999999876222 2589998888887775 2223333332221 1 0 0 000
Q ss_pred HHH--HHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHH
Q 020093 227 REM--WFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSR 265 (331)
Q Consensus 227 ~~l--~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~ 265 (331)
.++ .+.-+.-++-.+...|++|.|+++.+.........+
T Consensus 205 ~~~~~~~~e~~~~~~~aa~~g~iD~VIdP~dTR~~L~~~Le 245 (264)
T d1vrga2 205 RKLIEEYKQQFANPYIAASRGYVDMVIDPRETRKYIMRALE 245 (264)
T ss_dssp HHHHHHHHHHTSSHHHHHHTTSSSEECCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHH
Confidence 000 011122467788899999999999887665544443
|
| >d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.74 E-value=0.0085 Score=51.95 Aligned_cols=168 Identities=17% Similarity=0.142 Sum_probs=106.2
Q ss_pred CCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRPD-RRNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~-~~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
+|.-.-|.-|+|. ...+++.+-.+...+.++.++.. ++=+|.|.-.. .|-.|.+-+... ......+
T Consensus 63 ~G~~vgvia~~~~~~~G~~~~~~a~Ka~~fi~lc~~~-~iPli~l~d~p--Gf~~G~~~E~~g----------~~~~ga~ 129 (263)
T d1xnya2 63 EGRPVGIVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVP--GFLPGVDQEHDG----------IIRRGAK 129 (263)
T ss_dssp TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC--CBCCCHHHHHTT----------HHHHHHH
T ss_pred ccceEEEEecccceecCCcchhhHHHHHHHHHHHHHh-CCceEEeeccc--ccccchhHHHHh----------HHHHHHH
Confidence 5543444455554 34589999999999988888764 56777776654 366665433211 1223457
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhh----cccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCH---------
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHM----VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGP--------- 223 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal----~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~--------- 223 (331)
++.++.++..|.|+.|-|.+.|||..... ..|+++|.+++.++. .++-++...+.+.--.
T Consensus 130 ~~~a~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gv-------m~pe~aa~il~~~~~~~a~~~~~~~ 202 (263)
T d1xnya2 130 LIFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAV-------MGAQGAVNILHRRTIADAGDDAEAT 202 (263)
T ss_dssp HHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHSCCTTCSSS
T ss_pred HHHHHHccCCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhc-------cCHHHHHHHHHHHHHhhhccchHHH
Confidence 88899999999999999999998764432 368998888887775 3233333333221100
Q ss_pred --HHHHHHHHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHH
Q 020093 224 --KKAREMWFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREI 267 (331)
Q Consensus 224 --~~a~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l 267 (331)
....+.. -...++..+...|.+|.|+++.++.....+..+.+
T Consensus 203 ~~~~~~~~~--~~~~~p~~aA~~g~iD~VIdP~dTR~~L~~~L~~l 246 (263)
T d1xnya2 203 RARLIQEYE--DALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQL 246 (263)
T ss_dssp HHHHHHHHH--HHHSSSHHHHHHTSSSEECCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHhcCHHHHHHcccCCcccCHHHHHHHHHHHHHHH
Confidence 0001110 01234667788899999999988776655555444
|
| >d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=96.43 E-value=0.013 Score=50.74 Aligned_cols=170 Identities=16% Similarity=0.142 Sum_probs=105.0
Q ss_pred CCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHH
Q 020093 78 GEGIAKITINRPDR-RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLD 156 (331)
Q Consensus 78 ~~~v~~ItLnrp~~-~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 156 (331)
+|.-.-|.=|+|.. ..+++.+-.+...+.++.++. -++=+|.|.-.. .|-.|-+-... .. .....+
T Consensus 65 ~G~~vgvian~~~~~~G~~~~~~a~Kaarfi~lc~~-~~iPlv~l~D~p--Gf~~G~~~E~~---------g~-i~~ga~ 131 (264)
T d1on3a2 65 NGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDS-FNIPLVQLVDVP--GFLPGVQQEYG---------GI-IRHGAK 131 (264)
T ss_dssp TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEEC--CBCCCHHHHHT---------TH-HHHHHH
T ss_pred ecceEEEEeccchhcccccChHHHHHHHHHHHHHHh-cCCceEEEeccc--cccccHHHHHH---------HH-HHHHHH
Confidence 55433344555553 578999999998888888876 467777776654 47777554321 11 123457
Q ss_pred HHHHHHcCCCcEEEEEcCccccchhhhhh----cccEEEEeCCceeecCCCCccCCCCchHHHHHHHh-h----CH--HH
Q 020093 157 LQVQIRRLPKPVIAMVAGYAVGGGHVLHM----VCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRL-V----GP--KK 225 (331)
Q Consensus 157 l~~~l~~~~kPvIAav~G~a~GgG~~Lal----~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~-v----G~--~~ 225 (331)
++.++.++..|.|+.|-|.+.|+|..-.+ .+|++++-+++.++. .++-++...+-+. + -. .+
T Consensus 132 ~~~a~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~v-------Mg~Egaa~v~~~~el~a~~~~~~~~ 204 (264)
T d1on3a2 132 MLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAV-------MGAEGAANVIFRKEIKAADDPDAMR 204 (264)
T ss_dssp HHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHHSSCHHHHH
T ss_pred HHHHHHcCCCCEEEEEeccccCccccccccccCChhheeeHHhhHhhh-------ccHHHHHHHHHhhhhhhhhhhhhhh
Confidence 88899999999999999999998863332 467787777776664 3333333333221 1 00 00
Q ss_pred HHHH-HHcCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHH
Q 020093 226 AREM-WFLARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREI 267 (331)
Q Consensus 226 a~~l-~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l 267 (331)
...+ -+.-+.-++-.|...|.+|+|+++.+.........+.+
T Consensus 205 ~~~~~e~~~~~~~p~~aA~~g~iD~VIdP~eTR~~L~~aLe~~ 247 (264)
T d1on3a2 205 AEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMY 247 (264)
T ss_dssp HHHHHHHHHHHSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHHHH
Confidence 1000 11112235667888999999999888666555544443
|
| >d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.13 E-value=0.0051 Score=55.04 Aligned_cols=80 Identities=16% Similarity=0.121 Sum_probs=55.8
Q ss_pred CCCcEEEEEcCccccchhhhhhcccEEEEeCCceeecCCCCccCCCCchHHHHHHHhhCHHHHHHHHHcCCCC--CHHH-
Q 020093 164 LPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLVGPKKAREMWFLARFY--TAEE- 240 (331)
Q Consensus 164 ~~kPvIAav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l~ltG~~~--~a~e- 240 (331)
-..|+|++|.|.|+|+|+-++..||++|+.+++.+.+.. ...+-. .+|+.+ +.+|
T Consensus 239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~ltG-----------p~~l~~-----------~lG~eVy~s~~eL 296 (333)
T d1uyra1 239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTG-----------APAINK-----------MLGREVYTSNLQL 296 (333)
T ss_dssp HHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESSC-----------HHHHHH-----------HSSSCCCSCTHHH
T ss_pred CCCCEEEEEeCCccccceeecccccEEEEeCCceEEeeC-----------HHHHHH-----------hcCccccCChhHh
Confidence 469999999999999999999999999999988766521 122222 335544 3333
Q ss_pred -----HHhcCcccEecCCCcHHHHHHHHHHHHh
Q 020093 241 -----AEKMGLVNTVVPLEKLEQETIKWSREIL 268 (331)
Q Consensus 241 -----A~~~GLv~~vv~~~~l~~~a~~~a~~la 268 (331)
..+-|+++.++++|+ ++.+.++++.
T Consensus 297 GG~~i~~~nGv~h~~a~dd~---eai~~i~~~L 326 (333)
T d1uyra1 297 GGTQIMYNNGVSHLTAVDDL---AGVEKIVEWM 326 (333)
T ss_dssp HSHHHHHHHTSSSEEESSHH---HHHHHHHHHH
T ss_pred CCHhHHhhCCCceEEeCCHH---HHHHHHHHHH
Confidence 346899999998753 3444444443
|
| >d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=95.03 E-value=0.49 Score=41.09 Aligned_cols=159 Identities=11% Similarity=0.111 Sum_probs=97.1
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEE
Q 020093 92 RNAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAM 171 (331)
Q Consensus 92 ~Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa 171 (331)
.-+|+.+-.+...+.++.++.. ++=+|.|.=.. .|-.|-+-.. .. ......+++.++..+..|.|+.
T Consensus 96 ~G~l~~~~a~K~~rfi~lc~~~-~iPlv~l~D~p--Gf~~g~~~E~---------~g-~~r~ga~~~~a~~~~~VP~isv 162 (299)
T d1pixa3 96 GGKLYRQGLVKMNEFVTLCARD-RLPIVWIQDTT--GIDVGNDAEK---------AE-LLGLGQSLIYSIQTSHIPQFEI 162 (299)
T ss_dssp TTEECHHHHHHHHHHHHHHHHT-TCCEEEEECCC--EECCSHHHHH---------TT-HHHHHHHHHHHHHTCCCCEEEE
T ss_pred CCccCHHHHHHHHHHHHHHHHc-CCeEEEEEeCC--CcccchHHHh---------hh-HHHHHHHHHHHHHhhcceeEEE
Confidence 4568999999999999888764 56677775543 3666644321 11 1123457888999999999999
Q ss_pred EcCccccchhhhhh----cccEE--EEeCCceeecCCCCccCCCCchHHHHHH-HhhCHH------------HHHHHHH-
Q 020093 172 VAGYAVGGGHVLHM----VCDLT--IAADNAIFGQTGPKVGSFDAGYGSSIMS-RLVGPK------------KAREMWF- 231 (331)
Q Consensus 172 v~G~a~GgG~~Lal----~cD~~--ia~~~a~f~~pe~~~Gl~p~~g~~~~L~-r~vG~~------------~a~~l~l- 231 (331)
|-|.+.|||....+ ..|++ ++.+++ ++|..++-++...+. +.+... +-+++..
T Consensus 163 i~r~~~G~a~~am~g~~~~~~~~~~~awP~a-------eigvMg~E~aa~vl~~~el~~~~~~~~~~~e~~e~~~~~~~~ 235 (299)
T d1pixa3 163 TLRKGTAAAHYVLGGPQGNDTNAFSIGTAAT-------EIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQA 235 (299)
T ss_dssp ECSEEETTHHHHTTCTTCTTTEEEEEECTTC-------EEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred EecccccccccccccCccCcccceecCCCcc-------ccccccchhhheeehhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999998864322 23433 334444 455554444444432 222110 0011110
Q ss_pred cCCCCCHHHHHhcCcccEecCCCcHHHHHHHHHHHHhcc
Q 020093 232 LARFYTAEEAEKMGLVNTVVPLEKLEQETIKWSREILRN 270 (331)
Q Consensus 232 tG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~ 270 (331)
.-+..++-.+.+.|+||+|+++.+.......+.+.+..+
T Consensus 236 ~~~~~sp~~aAs~~~iD~IIDP~dTR~~L~~~Le~~~~~ 274 (299)
T d1pixa3 236 FYTKSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAYQN 274 (299)
T ss_dssp HHHTTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHHTTS
T ss_pred HHHhcCHHHHHHhCCcCeeECHHHHHHHHHHHHHHHHhC
Confidence 012357778889999999999988777666665544433
|
| >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.99 E-value=1 Score=40.42 Aligned_cols=106 Identities=19% Similarity=0.248 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCeeEEEEEeCCCCceeccccccchhcCCCcchhhhhhhhHHHHHHHHHcCCCcEEEEE
Q 020093 93 NAFRPHTVKELIRAFNDARDDSSVGVIILTGKGTEAFCSGGDQALRTRDGYADYENFGRLNVLDLQVQIRRLPKPVIAMV 172 (331)
Q Consensus 93 Nal~~~~~~eL~~al~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav 172 (331)
-.+.++-...-.+++.++.+..++=+|+|.-.- .|+.|-+-.. ... ......++.++..+..|+|..|
T Consensus 108 gv~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~p--GF~~G~~~E~---------~gi-lr~GA~iv~A~~~~~vP~i~vI 175 (404)
T d1uyra2 108 QVWHPNSAFKTAQAINDFNNGEQLPMMILANWR--GFSGGQRDMF---------NEV-LKYGSFIVDALVDYKQPIIIYI 175 (404)
T ss_dssp TCBCHHHHHHHHHHHHHHHTTSCCCEEECCCCC--CBCC---------------CTH-HHHHHHHHHHHHTCCSCEEEEE
T ss_pred CccCchHHHHHHHHHHHhhhccccceEEeecCC--cccCcHHHHH---------HHH-HHHHHHHHHHHHhcCCCEEEEE
Confidence 356778788888888777665677788887653 5888854321 111 1124467889999999999999
Q ss_pred --cCccccchhhhhh---ccc-E-EEEeCCceeecCCCCccCCCCchHHHHH
Q 020093 173 --AGYAVGGGHVLHM---VCD-L-TIAADNAIFGQTGPKVGSFDAGYGSSIM 217 (331)
Q Consensus 173 --~G~a~GgG~~Lal---~cD-~-~ia~~~a~f~~pe~~~Gl~p~~g~~~~L 217 (331)
.|.+.||.+...- ..| + ++|-++++ +|++++-|+...+
T Consensus 176 ~~~g~~~GGa~vv~~~~~~~~~~~~yAwP~a~-------~gVm~pEGav~I~ 220 (404)
T d1uyra2 176 PPTGELRGGSWVVVDPTINADQMEMYADVNAR-------AGVLEPQGMVGIK 220 (404)
T ss_dssp CTTCEEEHHHHHTTCGGGGTTTEEEEEETTCE-------EESSCHHHHHHHH
T ss_pred eCCcccchhhhhcccCccCCccceEEECCccc-------cccCChhhhhhhe
Confidence 5666665544331 112 2 34555555 4555555554433
|